Query 007634
Match_columns 595
No_of_seqs 1602 out of 3495
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 06:41:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007634.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007634hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gyw_A UDP-N-acetylglucosamine 100.0 3.5E-55 1.2E-59 456.9 35.3 324 266-595 9-343 (723)
2 1w3b_A UDP-N-acetylglucosamine 100.0 4.4E-46 1.5E-50 369.0 48.9 379 52-444 3-381 (388)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.8E-42 6.1E-47 343.1 48.9 359 45-417 30-388 (388)
4 2gw1_A Mitochondrial precursor 100.0 1.3E-40 4.4E-45 343.0 43.3 387 47-442 5-489 (514)
5 3fp2_A TPR repeat-containing p 100.0 2E-39 7E-44 335.9 43.1 386 47-441 24-501 (537)
6 2xpi_A Anaphase-promoting comp 100.0 2.1E-38 7.2E-43 332.7 49.0 389 46-442 82-590 (597)
7 2y4t_A DNAJ homolog subfamily 100.0 6.3E-38 2.2E-42 317.1 46.1 334 44-377 22-372 (450)
8 2xpi_A Anaphase-promoting comp 100.0 5.9E-37 2E-41 321.7 48.2 371 80-461 82-573 (597)
9 2y4t_A DNAJ homolog subfamily 100.0 3E-37 1E-41 312.1 41.6 359 64-436 8-415 (450)
10 3ieg_A DNAJ homolog subfamily 100.0 6.3E-36 2.2E-40 292.6 46.2 341 47-416 2-354 (359)
11 3ieg_A DNAJ homolog subfamily 100.0 6.5E-35 2.2E-39 285.4 44.3 329 81-445 2-349 (359)
12 2gw1_A Mitochondrial precursor 100.0 2E-35 7E-40 304.1 41.3 356 47-410 38-491 (514)
13 4g1t_A Interferon-induced prot 100.0 2.9E-35 9.9E-40 299.5 38.9 381 47-441 50-469 (472)
14 3fp2_A TPR repeat-containing p 100.0 1.4E-34 4.9E-39 299.5 39.5 353 45-406 56-500 (537)
15 2vsy_A XCC0866; transferase, g 100.0 1.3E-33 4.3E-38 293.4 35.2 303 279-595 2-311 (568)
16 3hym_B Cell division cycle pro 100.0 2.2E-32 7.7E-37 264.1 35.9 301 45-384 19-321 (330)
17 3hym_B Cell division cycle pro 100.0 2.3E-32 7.8E-37 264.1 34.9 297 75-419 15-322 (330)
18 1fch_A Peroxisomal targeting s 100.0 9.5E-33 3.2E-37 271.2 28.1 302 126-431 35-359 (368)
19 2xm6_A Protein corresponding t 100.0 3.4E-29 1.2E-33 255.2 53.2 363 45-441 36-445 (490)
20 4g1t_A Interferon-induced prot 100.0 1.3E-30 4.3E-35 265.2 37.9 361 81-460 50-452 (472)
21 1fch_A Peroxisomal targeting s 100.0 6.5E-32 2.2E-36 265.2 26.7 312 61-397 14-359 (368)
22 4eqf_A PEX5-related protein; a 100.0 2.1E-31 7.3E-36 261.2 25.4 291 137-430 48-355 (365)
23 2xm6_A Protein corresponding t 100.0 1.6E-27 5.6E-32 242.7 46.6 375 46-449 73-485 (490)
24 2ooe_A Cleavage stimulation fa 100.0 8.7E-28 3E-32 247.4 44.4 415 45-469 10-494 (530)
25 3cv0_A Peroxisome targeting si 100.0 1.8E-29 6.2E-34 243.3 28.8 277 160-436 24-320 (327)
26 4eqf_A PEX5-related protein; a 100.0 1.4E-29 4.7E-34 248.3 27.4 274 46-326 63-353 (365)
27 2ooe_A Cleavage stimulation fa 100.0 3.7E-27 1.3E-31 242.6 45.9 373 71-457 2-444 (530)
28 2h6f_A Protein farnesyltransfe 100.0 3.2E-29 1.1E-33 242.9 27.6 262 75-380 90-365 (382)
29 2h6f_A Protein farnesyltransfe 100.0 2.7E-29 9.2E-34 243.5 24.4 252 185-444 91-361 (382)
30 3cv0_A Peroxisome targeting si 100.0 1.6E-28 5.4E-33 236.7 29.2 277 47-330 20-316 (327)
31 3e4b_A ALGK; tetratricopeptide 100.0 4.2E-27 1.4E-31 235.8 30.3 382 52-468 7-422 (452)
32 3u4t_A TPR repeat-containing p 100.0 2.6E-27 8.9E-32 221.8 24.3 248 191-442 3-261 (272)
33 3u4t_A TPR repeat-containing p 100.0 5.8E-27 2E-31 219.4 26.5 253 47-307 2-262 (272)
34 3uq3_A Heat shock protein STI1 100.0 1.5E-26 5E-31 214.7 27.9 226 157-398 5-237 (258)
35 3uq3_A Heat shock protein STI1 100.0 8.3E-27 2.8E-31 216.4 25.7 243 190-441 4-252 (258)
36 3mkr_A Coatomer subunit epsilo 100.0 5.6E-26 1.9E-30 213.3 30.2 260 91-370 8-271 (291)
37 2pl2_A Hypothetical conserved 100.0 1.5E-26 5.2E-31 207.8 24.3 199 46-252 3-212 (217)
38 2pl2_A Hypothetical conserved 100.0 1.9E-26 6.6E-31 207.1 23.9 211 188-429 2-212 (217)
39 3mkr_A Coatomer subunit epsilo 99.9 8.1E-26 2.8E-30 212.3 27.8 259 166-439 8-272 (291)
40 3sf4_A G-protein-signaling mod 99.9 5.2E-27 1.8E-31 233.5 20.6 299 118-420 11-365 (406)
41 3sf4_A G-protein-signaling mod 99.9 4.6E-27 1.6E-31 233.9 19.3 304 46-385 7-364 (406)
42 4a1s_A PINS, partner of inscut 99.9 7.8E-26 2.7E-30 225.4 19.5 285 82-436 48-377 (411)
43 4a1s_A PINS, partner of inscut 99.9 1.9E-25 6.5E-30 222.6 21.0 279 157-464 48-369 (411)
44 3ro2_A PINS homolog, G-protein 99.9 2.5E-25 8.6E-30 215.0 20.9 276 159-435 7-336 (338)
45 2q7f_A YRRB protein; TPR, prot 99.9 9.3E-25 3.2E-29 200.5 23.5 217 44-267 19-235 (243)
46 3e4b_A ALGK; tetratricopeptide 99.9 2.3E-24 7.7E-29 216.0 25.7 354 47-434 34-424 (452)
47 3ro2_A PINS homolog, G-protein 99.9 1.2E-24 4E-29 210.3 20.9 284 47-366 4-335 (338)
48 2ho1_A Type 4 fimbrial biogene 99.9 2.5E-23 8.7E-28 192.1 27.1 208 48-262 37-246 (252)
49 2q7f_A YRRB protein; TPR, prot 99.9 7.1E-24 2.4E-28 194.6 23.0 213 192-411 24-236 (243)
50 3vtx_A MAMA; tetratricopeptide 99.9 7.6E-24 2.6E-28 185.3 22.0 172 266-437 5-176 (184)
51 1ouv_A Conserved hypothetical 99.9 1.5E-22 5.2E-27 189.3 31.7 232 187-437 2-257 (273)
52 3ulq_A Response regulator aspa 99.9 4.9E-24 1.7E-28 210.0 21.1 242 193-435 105-372 (383)
53 1xnf_A Lipoprotein NLPI; TPR, 99.9 4.2E-23 1.4E-27 193.4 26.1 252 125-391 14-269 (275)
54 3vtx_A MAMA; tetratricopeptide 99.9 4.6E-23 1.6E-27 180.3 24.4 173 80-259 3-175 (184)
55 1ouv_A Conserved hypothetical 99.9 5.8E-22 2E-26 185.3 33.2 181 170-401 55-255 (273)
56 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.3E-23 4.5E-28 196.8 22.0 247 167-425 15-269 (275)
57 2ho1_A Type 4 fimbrial biogene 99.9 9.4E-23 3.2E-27 188.3 26.5 208 191-439 37-246 (252)
58 2vq2_A PILW, putative fimbrial 99.9 2.6E-22 8.8E-27 181.7 28.4 212 187-439 4-219 (225)
59 2ond_A Cleavage stimulation fa 99.9 1.5E-22 5.2E-27 192.5 27.1 230 133-368 33-275 (308)
60 4abn_A Tetratricopeptide repea 99.9 2.6E-23 8.9E-28 209.6 22.4 230 171-427 82-317 (474)
61 2vq2_A PILW, putative fimbrial 99.9 5.9E-22 2E-26 179.3 29.3 211 46-263 6-220 (225)
62 4i17_A Hypothetical protein; T 99.9 1.5E-22 5E-27 183.8 24.5 217 46-269 5-224 (228)
63 1xi4_A Clathrin heavy chain; a 99.9 8.2E-21 2.8E-25 201.2 39.8 336 45-443 982-1321(1630)
64 4abn_A Tetratricopeptide repea 99.9 5.4E-23 1.8E-27 207.3 22.6 201 207-449 84-305 (474)
65 3q3e_A HMW1C-like glycosyltran 99.9 2.1E-24 7.2E-29 213.1 11.5 147 440-595 225-378 (631)
66 3ulq_A Response regulator aspa 99.9 1.5E-22 5E-27 199.4 24.5 323 46-399 10-370 (383)
67 2ond_A Cleavage stimulation fa 99.9 2.1E-21 7.2E-26 184.6 30.3 224 208-438 33-277 (308)
68 4i17_A Hypothetical protein; T 99.9 2.8E-21 9.5E-26 175.3 27.4 154 159-312 9-165 (228)
69 1xi4_A Clathrin heavy chain; a 99.9 2.5E-20 8.5E-25 197.5 37.5 320 54-428 1055-1381(1630)
70 3q15_A PSP28, response regulat 99.9 1.1E-21 3.9E-26 192.6 24.0 239 193-432 103-366 (378)
71 4gyw_A UDP-N-acetylglucosamine 99.9 4.9E-22 1.7E-26 207.5 21.4 174 77-257 4-177 (723)
72 1hz4_A MALT regulatory protein 99.9 2.1E-20 7.1E-25 183.4 29.8 314 83-434 15-352 (373)
73 3nf1_A KLC 1, kinesin light ch 99.9 2.3E-22 8E-27 191.9 14.3 244 187-434 23-310 (311)
74 1hz4_A MALT regulatory protein 99.9 4.5E-20 1.5E-24 181.0 27.6 280 117-434 15-325 (373)
75 3nf1_A KLC 1, kinesin light ch 99.9 1.5E-21 5.1E-26 186.3 16.6 220 114-365 67-309 (311)
76 3dra_A Protein farnesyltransfe 99.9 6.7E-20 2.3E-24 170.1 27.0 236 207-442 49-299 (306)
77 3q15_A PSP28, response regulat 99.9 1.1E-20 3.6E-25 185.6 22.3 239 158-398 102-366 (378)
78 3qky_A Outer membrane assembly 99.9 2.3E-20 7.9E-25 173.1 22.4 191 44-258 11-228 (261)
79 3dra_A Protein farnesyltransfe 99.9 3.3E-19 1.1E-23 165.5 29.8 234 171-411 47-302 (306)
80 3qky_A Outer membrane assembly 99.9 5.5E-20 1.9E-24 170.5 23.3 177 75-272 8-198 (261)
81 1qqe_A Vesicular transport pro 99.9 2E-20 6.8E-25 176.2 19.8 213 66-298 3-231 (292)
82 1b89_A Protein (clathrin heavy 99.9 1.5E-21 5.1E-26 186.3 11.1 320 60-429 15-353 (449)
83 1qqe_A Vesicular transport pro 99.9 3.1E-20 1.1E-24 174.9 19.8 225 63-304 32-278 (292)
84 4e6h_A MRNA 3'-END-processing 99.8 1.3E-17 4.5E-22 172.0 39.9 387 44-437 62-576 (679)
85 2pzi_A Probable serine/threoni 99.8 1.7E-19 5.7E-24 190.0 25.1 174 59-240 402-583 (681)
86 3as5_A MAMA; tetratricopeptide 99.8 2E-19 6.8E-24 157.1 21.1 173 266-438 8-180 (186)
87 4ga2_A E3 SUMO-protein ligase 99.8 9.7E-21 3.3E-25 158.6 11.7 146 272-417 3-149 (150)
88 2pzi_A Probable serine/threoni 99.8 9.6E-20 3.3E-24 191.8 21.0 188 185-383 388-583 (681)
89 3urz_A Uncharacterized protein 99.8 8.5E-20 2.9E-24 162.4 17.0 169 47-223 3-189 (208)
90 1b89_A Protein (clathrin heavy 99.8 8.1E-21 2.8E-25 181.3 10.7 356 47-457 31-407 (449)
91 4e6h_A MRNA 3'-END-processing 99.8 2.1E-16 7E-21 163.1 42.4 357 64-434 48-536 (679)
92 3urz_A Uncharacterized protein 99.8 1.8E-19 6.2E-24 160.3 16.1 168 268-436 6-191 (208)
93 3as5_A MAMA; tetratricopeptide 99.8 9.6E-19 3.3E-23 152.8 20.3 170 83-259 9-178 (186)
94 4ga2_A E3 SUMO-protein ligase 99.8 6.7E-20 2.3E-24 153.4 11.5 144 89-239 4-148 (150)
95 2yhc_A BAMD, UPF0169 lipoprote 99.8 3.1E-18 1E-22 154.6 23.3 190 46-259 2-218 (225)
96 3dss_A Geranylgeranyl transfer 99.8 2.9E-17 1E-21 153.0 30.1 198 54-258 35-271 (331)
97 3edt_B KLC 2, kinesin light ch 99.8 4E-19 1.4E-23 166.8 16.3 226 203-432 13-282 (283)
98 3dss_A Geranylgeranyl transfer 99.8 8.4E-17 2.9E-21 149.9 30.5 241 169-439 41-312 (331)
99 2yhc_A BAMD, UPF0169 lipoprote 99.8 7.5E-18 2.6E-22 152.0 22.9 183 81-284 3-209 (225)
100 3edt_B KLC 2, kinesin light ch 99.8 4.9E-19 1.7E-23 166.2 15.6 157 95-255 14-199 (283)
101 4gco_A Protein STI-1; structur 99.8 1.1E-18 3.8E-23 140.8 14.1 115 328-442 7-121 (126)
102 4gco_A Protein STI-1; structur 99.8 1.6E-18 5.6E-23 139.9 14.5 121 292-412 5-125 (126)
103 3q7a_A Farnesyltransferase alp 99.8 3E-16 1E-20 146.7 29.2 191 160-350 57-258 (349)
104 2r5s_A Uncharacterized protein 99.8 4.2E-18 1.4E-22 147.1 13.7 168 79-253 3-172 (176)
105 3gyz_A Chaperone protein IPGC; 99.8 8.9E-19 3E-23 145.4 8.6 116 321-436 23-138 (151)
106 2r5s_A Uncharacterized protein 99.8 4.4E-18 1.5E-22 147.0 13.3 164 48-219 6-172 (176)
107 3q7a_A Farnesyltransferase alp 99.8 2E-16 7E-21 147.8 25.2 186 49-241 54-258 (349)
108 3qou_A Protein YBBN; thioredox 99.8 3.1E-17 1.1E-21 153.7 19.8 169 78-253 113-283 (287)
109 2ifu_A Gamma-SNAP; membrane fu 99.8 1.7E-17 5.9E-22 157.3 17.7 173 59-257 2-187 (307)
110 2ifu_A Gamma-SNAP; membrane fu 99.8 1E-17 3.5E-22 158.9 15.4 209 170-439 4-231 (307)
111 4f3v_A ESX-1 secretion system 99.7 3.3E-18 1.1E-22 154.5 10.2 240 195-458 11-262 (282)
112 3qou_A Protein YBBN; thioredox 99.7 8.7E-17 3E-21 150.6 19.1 161 270-430 121-283 (287)
113 2vsy_A XCC0866; transferase, g 99.7 5.7E-17 2E-21 168.1 19.4 165 61-232 2-169 (568)
114 3gyz_A Chaperone protein IPGC; 99.7 1.2E-17 4E-22 138.7 10.4 118 285-402 21-138 (151)
115 4f3v_A ESX-1 secretion system 99.7 2.9E-17 1E-21 148.3 12.6 207 48-264 7-246 (282)
116 2vgx_A Chaperone SYCD; alterna 99.7 4.6E-17 1.6E-21 135.5 11.6 119 321-439 8-126 (148)
117 1p5q_A FKBP52, FK506-binding p 99.7 4.6E-18 1.6E-22 163.0 6.2 186 238-432 78-295 (336)
118 2fo7_A Synthetic consensus TPR 99.7 1.7E-15 5.7E-20 124.3 19.0 135 301-435 2-136 (136)
119 1p5q_A FKBP52, FK506-binding p 99.7 9.8E-18 3.3E-22 160.7 5.1 193 60-254 77-294 (336)
120 3rjv_A Putative SEL1 repeat pr 99.7 4.8E-15 1.6E-19 131.9 21.7 173 210-397 5-197 (212)
121 2c2l_A CHIP, carboxy terminus 99.7 2.3E-16 7.8E-21 147.2 13.5 197 46-254 2-199 (281)
122 2vgx_A Chaperone SYCD; alterna 99.7 1.7E-16 5.9E-21 132.1 11.3 120 286-405 7-126 (148)
123 3rjv_A Putative SEL1 repeat pr 99.7 2.5E-15 8.4E-20 133.8 19.1 177 65-256 3-199 (212)
124 2xcb_A PCRH, regulatory protei 99.7 2.8E-16 9.4E-21 130.2 11.6 120 321-440 5-124 (142)
125 2c2l_A CHIP, carboxy terminus 99.7 1.2E-15 4.2E-20 142.2 15.0 193 159-397 6-199 (281)
126 2xcb_A PCRH, regulatory protei 99.7 4.3E-16 1.5E-20 129.1 10.4 127 287-413 5-131 (142)
127 1hh8_A P67PHOX, NCF-2, neutrop 99.6 8.9E-15 3E-19 130.7 19.0 134 301-437 7-156 (213)
128 3upv_A Heat shock protein STI1 99.6 5.3E-15 1.8E-19 119.7 15.4 114 300-413 4-123 (126)
129 2uy1_A Cleavage stimulation fa 99.6 3.9E-12 1.3E-16 127.8 39.2 371 46-430 12-412 (493)
130 2e2e_A Formate-dependent nitri 99.6 1.6E-15 5.6E-20 131.0 12.5 129 310-438 20-151 (177)
131 2fo7_A Synthetic consensus TPR 99.6 1.6E-14 5.6E-19 118.2 18.0 133 268-400 3-135 (136)
132 1dce_A Protein (RAB geranylger 99.6 1.2E-15 4.1E-20 155.6 12.8 197 54-257 34-270 (567)
133 3upv_A Heat shock protein STI1 99.6 5.2E-15 1.8E-19 119.7 13.9 111 332-442 2-118 (126)
134 3mv2_B Coatomer subunit epsilo 99.6 1.9E-14 6.6E-19 131.7 19.1 188 176-371 85-290 (310)
135 1a17_A Serine/threonine protei 99.6 2.1E-14 7.2E-19 122.5 18.0 133 300-432 13-147 (166)
136 3mv2_B Coatomer subunit epsilo 99.6 2.5E-14 8.5E-19 131.0 19.2 246 166-439 22-290 (310)
137 1dce_A Protein (RAB geranylger 99.6 3.1E-15 1.1E-19 152.5 14.3 194 242-435 46-271 (567)
138 2qfc_A PLCR protein; TPR, HTH, 99.6 3.8E-14 1.3E-18 133.4 20.4 177 78-255 71-267 (293)
139 2qfc_A PLCR protein; TPR, HTH, 99.6 5.1E-14 1.8E-18 132.5 21.0 174 224-432 74-267 (293)
140 3sz7_A HSC70 cochaperone (SGT) 99.6 9.4E-15 3.2E-19 124.4 14.3 114 331-444 8-121 (164)
141 1hh8_A P67PHOX, NCF-2, neutrop 99.6 2E-14 6.7E-19 128.4 17.0 152 267-433 7-174 (213)
142 3u3w_A Transcriptional activat 99.6 2.8E-14 9.5E-19 134.3 18.8 172 49-220 76-266 (293)
143 2e2e_A Formate-dependent nitri 99.6 7.5E-15 2.6E-19 126.8 13.5 130 276-405 20-152 (177)
144 2hr2_A Hypothetical protein; a 99.6 5.8E-15 2E-19 120.2 11.5 107 336-442 13-142 (159)
145 4gcn_A Protein STI-1; structur 99.6 2E-14 6.7E-19 116.1 14.5 114 81-195 7-120 (127)
146 2lni_A Stress-induced-phosphop 99.6 2E-14 6.8E-19 117.4 14.6 121 297-417 13-133 (133)
147 2fbn_A 70 kDa peptidylprolyl i 99.6 2.2E-15 7.5E-20 132.8 9.0 151 279-429 17-184 (198)
148 3u3w_A Transcriptional activat 99.6 5.4E-14 1.8E-18 132.4 18.5 161 273-433 82-268 (293)
149 2vyi_A SGTA protein; chaperone 99.6 2.4E-14 8.2E-19 116.5 13.8 121 298-418 10-130 (131)
150 2lni_A Stress-induced-phosphop 99.6 5.8E-14 2E-18 114.7 16.1 122 43-171 11-132 (133)
151 3sz7_A HSC70 cochaperone (SGT) 99.6 2.6E-14 8.8E-19 121.6 14.2 115 297-411 8-122 (164)
152 1hxi_A PEX5, peroxisome target 99.6 1.8E-14 6E-19 115.2 12.2 101 336-436 19-119 (121)
153 4gcn_A Protein STI-1; structur 99.6 3.2E-14 1.1E-18 114.8 13.4 108 191-298 8-115 (127)
154 1a17_A Serine/threonine protei 99.6 1.5E-13 5.1E-18 117.1 18.3 135 263-397 10-146 (166)
155 2fbn_A 70 kDa peptidylprolyl i 99.6 5.7E-15 1.9E-19 130.2 9.6 167 85-251 7-183 (198)
156 4b4t_Q 26S proteasome regulato 99.6 5.5E-14 1.9E-18 140.7 17.8 229 49-295 5-245 (434)
157 1na0_A Designed protein CTPR3; 99.6 2.6E-13 8.8E-18 109.2 17.5 117 300-416 9-125 (125)
158 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 3E-15 1E-19 149.8 6.8 147 278-424 246-407 (457)
159 2hr2_A Hypothetical protein; a 99.5 3.6E-14 1.2E-18 115.6 11.8 110 47-156 10-142 (159)
160 1hxi_A PEX5, peroxisome target 99.5 5E-14 1.7E-18 112.5 12.3 102 49-150 18-119 (121)
161 3q49_B STIP1 homology and U bo 99.5 9.4E-14 3.2E-18 114.1 14.0 104 331-434 6-109 (137)
162 3q49_B STIP1 homology and U bo 99.5 1.5E-13 5.2E-18 112.9 14.4 124 294-417 3-131 (137)
163 2vyi_A SGTA protein; chaperone 99.5 1.8E-13 6.1E-18 111.2 14.2 102 48-149 12-113 (131)
164 1elw_A TPR1-domain of HOP; HOP 99.5 4.3E-13 1.5E-17 106.7 15.8 110 302-411 6-115 (118)
165 3rkv_A Putative peptidylprolyl 99.5 1E-13 3.5E-18 117.7 12.3 103 300-402 11-131 (162)
166 1wao_1 Serine/threonine protei 99.5 4.8E-15 1.6E-19 148.8 3.6 140 301-440 7-159 (477)
167 3gw4_A Uncharacterized protein 99.5 2E-13 6.8E-18 120.7 13.8 160 58-220 2-176 (203)
168 3gw4_A Uncharacterized protein 99.5 2.9E-13 9.8E-18 119.7 14.8 158 278-435 4-180 (203)
169 3rkv_A Putative peptidylprolyl 99.5 4E-13 1.4E-17 113.9 14.5 105 46-150 9-131 (162)
170 2uy1_A Cleavage stimulation fa 99.5 1.7E-11 5.9E-16 123.1 28.8 326 60-428 6-380 (493)
171 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 1.9E-14 6.4E-19 144.0 7.2 156 97-252 249-413 (457)
172 2dba_A Smooth muscle cell asso 99.5 7.4E-13 2.5E-17 110.3 15.8 109 331-439 25-136 (148)
173 2kck_A TPR repeat; tetratricop 99.5 1.7E-13 6E-18 107.9 11.3 107 330-436 2-111 (112)
174 1na0_A Designed protein CTPR3; 99.5 2E-12 6.7E-17 104.0 17.5 66 83-148 10-75 (125)
175 1elw_A TPR1-domain of HOP; HOP 99.5 1.7E-12 5.9E-17 103.1 16.8 111 47-157 3-113 (118)
176 2if4_A ATFKBP42; FKBP-like, al 99.5 5.4E-14 1.8E-18 134.7 8.8 157 264-437 177-334 (338)
177 2xev_A YBGF; tetratricopeptide 99.5 1.2E-12 4.1E-17 106.1 15.3 102 337-438 5-112 (129)
178 2dba_A Smooth muscle cell asso 99.5 5E-12 1.7E-16 105.1 18.9 113 44-156 24-139 (148)
179 2xev_A YBGF; tetratricopeptide 99.5 1.7E-12 5.8E-17 105.2 14.9 106 49-154 3-114 (129)
180 1zu2_A Mitochondrial import re 99.4 2E-13 6.9E-18 110.9 8.6 93 349-441 17-130 (158)
181 1wao_1 Serine/threonine protei 99.4 2.3E-13 7.7E-18 136.6 10.8 136 266-401 6-154 (477)
182 2kck_A TPR repeat; tetratricop 99.4 8.5E-13 2.9E-17 103.8 11.5 106 296-401 2-110 (112)
183 1elr_A TPR2A-domain of HOP; HO 99.4 9E-13 3.1E-17 107.1 11.8 114 300-414 4-124 (131)
184 1ihg_A Cyclophilin 40; ppiase 99.4 1.2E-12 4.1E-17 126.6 14.6 123 302-424 225-363 (370)
185 4b4t_Q 26S proteasome regulato 99.4 4.9E-12 1.7E-16 126.4 18.9 204 193-397 6-245 (434)
186 1zu2_A Mitochondrial import re 99.4 6.8E-13 2.3E-17 107.8 9.1 87 316-402 18-125 (158)
187 2if4_A ATFKBP42; FKBP-like, al 99.4 8.1E-13 2.8E-17 126.5 11.3 102 301-402 231-333 (338)
188 3k9i_A BH0479 protein; putativ 99.4 5.7E-13 1.9E-17 105.9 8.4 93 347-439 3-98 (117)
189 1elr_A TPR2A-domain of HOP; HO 99.4 3E-12 1E-16 103.9 12.3 123 81-204 3-125 (131)
190 3k9i_A BH0479 protein; putativ 99.4 5.1E-13 1.8E-17 106.1 7.0 94 313-406 3-99 (117)
191 3ro3_A PINS homolog, G-protein 99.4 3E-12 1E-16 108.4 11.8 134 301-434 10-161 (164)
192 1ihg_A Cyclophilin 40; ppiase 99.4 5.9E-12 2E-16 121.7 14.9 132 259-390 216-363 (370)
193 3ro3_A PINS homolog, G-protein 99.3 2.2E-11 7.4E-16 103.0 13.1 140 117-257 10-161 (164)
194 2kat_A Uncharacterized protein 99.2 1.9E-10 6.6E-15 90.7 11.9 81 319-399 4-84 (115)
195 2l6j_A TPR repeat-containing p 99.2 1E-11 3.5E-16 97.5 4.2 92 334-425 4-101 (111)
196 1na3_A Designed protein CTPR2; 99.2 2.4E-10 8.3E-15 85.7 11.1 83 334-416 9-91 (91)
197 2l6j_A TPR repeat-containing p 99.2 2.3E-11 7.9E-16 95.4 5.5 95 47-141 3-103 (111)
198 2kat_A Uncharacterized protein 99.2 5.7E-10 1.9E-14 88.0 13.0 83 66-148 3-85 (115)
199 1na3_A Designed protein CTPR2; 99.1 7.5E-10 2.5E-14 83.0 11.7 84 47-130 8-91 (91)
200 3n71_A Histone lysine methyltr 99.1 5.4E-10 1.8E-14 111.1 12.2 127 305-431 314-464 (490)
201 2kc7_A BFR218_protein; tetratr 99.1 1.9E-10 6.6E-15 87.9 6.7 91 338-436 4-95 (99)
202 3ma5_A Tetratricopeptide repea 99.1 4.3E-10 1.5E-14 86.0 8.2 74 364-437 3-76 (100)
203 2kc7_A BFR218_protein; tetratr 99.1 3E-10 1E-14 86.8 7.1 92 51-150 3-95 (99)
204 1klx_A Cysteine rich protein B 99.0 7.2E-09 2.5E-13 84.4 15.4 88 340-431 31-126 (138)
205 3u64_A Protein TP_0956; tetrat 99.0 1E-08 3.6E-13 91.2 16.6 108 328-435 146-273 (301)
206 1klx_A Cysteine rich protein B 99.0 5.6E-09 1.9E-13 85.0 14.0 122 279-410 8-137 (138)
207 3ma5_A Tetratricopeptide repea 99.0 1.4E-09 4.8E-14 83.1 9.7 70 330-399 3-72 (100)
208 3n71_A Histone lysine methyltr 99.0 4E-09 1.4E-13 104.8 14.6 133 49-185 310-463 (490)
209 3u64_A Protein TP_0956; tetrat 99.0 1.7E-08 5.8E-13 89.8 16.2 186 64-258 48-273 (301)
210 3ly7_A Transcriptional activat 98.9 4.5E-08 1.6E-12 91.2 17.3 144 292-436 186-344 (372)
211 3ly7_A Transcriptional activat 98.9 4.8E-07 1.6E-11 84.4 21.9 155 73-259 185-344 (372)
212 3bee_A Putative YFRE protein; 98.8 5E-08 1.7E-12 72.5 10.3 72 364-435 2-76 (93)
213 3bee_A Putative YFRE protein; 98.8 7.8E-08 2.7E-12 71.4 11.0 72 78-149 2-76 (93)
214 1pc2_A Mitochondria fission pr 98.8 4.7E-08 1.6E-12 78.3 10.3 93 349-441 13-110 (152)
215 1pc2_A Mitochondria fission pr 98.7 2.8E-07 9.7E-12 73.9 12.5 93 62-154 12-109 (152)
216 2v5f_A Prolyl 4-hydroxylase su 98.6 3.5E-07 1.2E-11 70.0 11.4 78 46-123 3-87 (104)
217 2v5f_A Prolyl 4-hydroxylase su 98.6 5.3E-07 1.8E-11 68.9 11.0 75 368-442 5-86 (104)
218 3qww_A SET and MYND domain-con 98.6 4.4E-07 1.5E-11 88.6 12.3 61 370-430 342-410 (433)
219 3qwp_A SET and MYND domain-con 98.5 2.4E-07 8.3E-12 90.7 10.2 88 310-397 297-400 (429)
220 3qww_A SET and MYND domain-con 98.5 2.7E-07 9.4E-12 90.1 10.1 99 307-405 305-424 (433)
221 3qwp_A SET and MYND domain-con 98.5 1.2E-06 4.1E-11 85.8 13.0 105 48-152 287-412 (429)
222 4g26_A Pentatricopeptide repea 98.3 0.00017 5.9E-09 72.2 23.6 158 273-431 33-204 (501)
223 1nzn_A CGI-135 protein, fissio 98.2 7.1E-06 2.4E-10 63.1 9.6 91 350-440 17-112 (126)
224 4g26_A Pentatricopeptide repea 98.2 0.00038 1.3E-08 69.7 25.1 160 53-220 31-204 (501)
225 1nzn_A CGI-135 protein, fissio 98.2 3.6E-05 1.2E-09 59.2 11.9 95 60-154 13-112 (126)
226 4h7y_A Dual specificity protei 98.0 0.00018 6.2E-09 56.4 13.0 115 111-226 8-129 (161)
227 4h7y_A Dual specificity protei 97.9 0.00023 7.9E-09 55.9 12.7 107 330-437 9-129 (161)
228 3ffl_A Anaphase-promoting comp 97.8 0.00017 6E-09 58.0 9.9 61 303-363 23-92 (167)
229 3ffl_A Anaphase-promoting comp 97.8 0.00024 8.2E-09 57.2 10.5 93 50-142 22-148 (167)
230 1y8m_A FIS1; mitochondria, unk 97.6 0.0012 4.1E-08 51.6 12.0 76 365-440 36-115 (144)
231 3o48_A Mitochondria fission 1 97.5 0.00065 2.2E-08 52.3 9.3 74 367-440 39-116 (134)
232 1y8m_A FIS1; mitochondria, unk 97.5 0.0062 2.1E-07 47.6 14.6 76 79-154 36-115 (144)
233 3o48_A Mitochondria fission 1 97.4 0.0021 7.3E-08 49.5 10.6 77 81-157 39-119 (134)
234 4gns_B Protein CSD3, chitin bi 97.3 0.17 5.7E-06 52.6 27.4 59 159-217 339-397 (754)
235 1qsa_A Protein (soluble lytic 97.2 0.23 8E-06 50.5 28.9 144 48-207 6-152 (618)
236 1qsa_A Protein (soluble lytic 97.1 0.3 1E-05 49.7 37.1 338 70-427 57-438 (618)
237 3mkq_A Coatomer beta'-subunit; 97.1 0.15 5.1E-06 54.7 26.0 75 161-251 633-707 (814)
238 3txn_A 26S proteasome regulato 97.1 0.2 7E-06 47.6 23.2 100 195-294 103-209 (394)
239 4b4t_P 26S proteasome regulato 97.0 0.1 3.6E-06 51.0 21.4 205 47-254 16-247 (445)
240 3mkq_A Coatomer beta'-subunit; 96.9 0.093 3.2E-06 56.4 22.5 44 169-217 664-707 (814)
241 3txn_A 26S proteasome regulato 96.8 0.061 2.1E-06 51.1 17.4 94 304-397 103-210 (394)
242 3kae_A CDC27, possible protein 96.6 0.2 6.8E-06 40.1 16.5 157 273-434 40-240 (242)
243 3mkq_B Coatomer subunit alpha; 96.6 0.15 5.2E-06 41.9 15.5 108 47-182 7-114 (177)
244 4b4t_P 26S proteasome regulato 96.5 0.18 6.3E-06 49.3 19.0 191 171-363 30-247 (445)
245 3kae_A CDC27, possible protein 96.5 0.23 7.8E-06 39.8 20.3 190 55-258 9-241 (242)
246 4ady_A RPN2, 26S proteasome re 96.4 1.3 4.3E-05 47.1 31.3 188 201-394 384-586 (963)
247 4gns_B Protein CSD3, chitin bi 96.4 0.049 1.7E-06 56.5 14.3 125 95-251 261-397 (754)
248 1zbp_A Hypothetical protein VP 96.2 0.078 2.7E-06 46.6 12.3 62 55-116 4-65 (273)
249 3mkq_B Coatomer subunit alpha; 96.1 0.27 9.4E-06 40.4 14.7 108 81-216 7-114 (177)
250 1zbp_A Hypothetical protein VP 95.9 0.18 6.1E-06 44.4 13.5 61 91-151 6-66 (273)
251 2ff4_A Probable regulatory pro 95.7 0.2 6.7E-06 48.1 14.2 96 49-144 116-233 (388)
252 2ff4_A Probable regulatory pro 95.5 0.22 7.7E-06 47.7 13.9 112 306-430 121-233 (388)
253 4b4t_S RPN3, 26S proteasome re 94.9 0.049 1.7E-06 53.2 7.1 128 309-438 145-306 (523)
254 1ya0_A SMG-7 transcript varian 94.9 0.16 5.4E-06 50.1 10.8 80 301-380 153-232 (497)
255 4b4t_S RPN3, 26S proteasome re 94.9 0.049 1.7E-06 53.2 7.0 133 55-189 143-302 (523)
256 1ya0_A SMG-7 transcript varian 94.7 0.22 7.7E-06 49.0 11.3 86 261-346 147-232 (497)
257 4b4t_R RPN7, 26S proteasome re 93.9 0.29 9.9E-06 47.7 10.4 102 83-185 132-236 (429)
258 4b4t_R RPN7, 26S proteasome re 93.7 0.32 1.1E-05 47.4 10.2 105 190-295 130-237 (429)
259 4fhn_B Nucleoporin NUP120; pro 93.4 4.8 0.00016 44.8 20.1 146 84-251 814-964 (1139)
260 3spa_A Mtrpol, DNA-directed RN 93.3 1.1 3.9E-05 47.8 13.8 99 266-364 127-231 (1134)
261 3spa_A Mtrpol, DNA-directed RN 93.3 1.1 3.9E-05 47.7 13.8 98 300-397 127-230 (1134)
262 4fhn_B Nucleoporin NUP120; pro 93.1 3.1 0.00011 46.3 18.1 148 53-207 817-987 (1139)
263 4ady_A RPN2, 26S proteasome re 92.8 12 0.0004 39.9 25.6 195 92-294 384-588 (963)
264 3lvg_A Clathrin heavy chain 1; 91.5 5E-06 1.7E-10 78.8 -25.5 266 46-355 52-325 (624)
265 2wpv_A GET4, UPF0363 protein Y 83.6 26 0.00088 31.9 20.1 84 298-396 132-216 (312)
266 2wpv_A GET4, UPF0363 protein Y 82.6 29 0.00097 31.6 24.6 48 47-108 12-59 (312)
267 3lpz_A GET4 (YOR164C homolog); 80.6 35 0.0012 31.3 30.9 49 46-108 10-61 (336)
268 4gq2_M Nucleoporin NUP120; bet 75.5 28 0.00096 37.7 13.1 92 52-147 814-928 (950)
269 4gq2_M Nucleoporin NUP120; bet 73.5 61 0.0021 35.1 15.1 53 87-143 815-867 (950)
270 2ijq_A Hypothetical protein; s 71.6 26 0.00089 28.1 8.7 66 46-111 30-104 (161)
271 3esl_A Checkpoint serine/threo 68.4 31 0.0011 28.9 8.8 48 350-397 95-144 (202)
272 1o9d_A 14-3-3-like protein C; 67.9 63 0.0022 28.3 11.9 15 415-429 191-205 (260)
273 3esl_A Checkpoint serine/threo 67.8 38 0.0013 28.3 9.2 65 368-433 80-146 (202)
274 3lvg_A Clathrin heavy chain 1; 67.7 0.0096 3.3E-07 57.0 -13.7 176 46-246 142-325 (624)
275 3uzd_A 14-3-3 protein gamma; s 65.4 68 0.0023 27.8 14.2 62 47-108 3-66 (248)
276 3lpz_A GET4 (YOR164C homolog); 65.3 84 0.0029 28.8 30.8 27 222-248 133-159 (336)
277 3ax2_A Mitochondrial import re 65.3 19 0.00065 24.3 5.7 28 53-80 22-49 (73)
278 3ubw_A 14-3-3E, 14-3-3 protein 64.5 73 0.0025 27.9 16.5 62 47-108 30-93 (261)
279 3ax2_A Mitochondrial import re 64.1 20 0.0007 24.2 5.6 29 87-115 22-50 (73)
280 1wy6_A Hypothetical protein ST 63.5 51 0.0017 25.7 13.5 83 170-256 74-156 (172)
281 2ijq_A Hypothetical protein; s 63.4 56 0.0019 26.2 9.8 67 120-186 36-104 (161)
282 3t5v_B Nuclear mRNA export pro 62.6 12 0.00042 36.2 6.2 17 557-573 403-419 (455)
283 1o9d_A 14-3-3-like protein C; 62.0 82 0.0028 27.6 15.5 61 47-107 7-71 (260)
284 2qx5_A Nucleoporin NIC96; mRNA 60.8 1.5E+02 0.0052 30.3 16.2 31 404-435 538-570 (661)
285 2cfu_A SDSA1; SDS-hydrolase, l 60.0 15 0.00052 37.8 6.8 50 47-96 448-497 (658)
286 2cwy_A Hypothetical protein TT 59.8 45 0.0015 23.9 7.9 62 121-185 6-67 (94)
287 1wy6_A Hypothetical protein ST 58.6 63 0.0021 25.1 14.3 53 310-362 101-153 (172)
288 2br9_A 14-3-3E, 14-3-3 protein 57.5 93 0.0032 26.8 15.6 60 47-106 4-65 (234)
289 2crb_A Nuclear receptor bindin 56.9 16 0.00056 25.7 4.2 28 48-75 15-42 (97)
290 3t5v_B Nuclear mRNA export pro 56.7 92 0.0032 30.1 11.1 62 197-258 182-254 (455)
291 1om2_A Protein (mitochondrial 56.6 39 0.0013 24.2 6.3 29 160-188 23-51 (95)
292 2vkj_A TM1634; membrane protei 54.8 25 0.00086 24.4 4.8 31 47-77 52-82 (106)
293 2qx5_A Nucleoporin NIC96; mRNA 53.3 2E+02 0.0069 29.4 13.6 21 311-332 549-569 (661)
294 2w2u_A Hypothetical P60 katani 53.0 23 0.00079 24.7 4.6 29 48-76 19-47 (83)
295 2npm_A 14-3-3 domain containin 52.8 1.2E+02 0.0041 26.6 14.5 17 414-430 210-226 (260)
296 1om2_A Protein (mitochondrial 52.7 36 0.0012 24.4 5.6 30 269-298 23-52 (95)
297 1wfd_A Hypothetical protein 15 52.0 19 0.00065 25.8 4.2 30 47-76 14-43 (93)
298 1hym_A CMTI-V, hydrolyzed cucu 51.2 11 0.00037 22.6 2.3 27 545-571 8-34 (45)
299 2crb_A Nuclear receptor bindin 51.0 36 0.0012 24.0 5.2 31 153-183 11-41 (97)
300 4a5x_A MITD1, MIT domain-conta 50.6 26 0.00088 24.6 4.6 30 47-76 15-44 (86)
301 2v6y_A AAA family ATPase, P60 49.8 27 0.00093 24.3 4.6 26 50-75 13-38 (83)
302 2cwy_A Hypothetical protein TT 49.0 70 0.0024 22.8 7.0 60 231-293 7-66 (94)
303 3t5x_A PCI domain-containing p 48.2 44 0.0015 28.2 6.6 29 119-147 17-45 (203)
304 3iqu_A 14-3-3 protein sigma; s 46.9 1.4E+02 0.0048 25.7 17.1 49 242-293 150-203 (236)
305 2rpa_A Katanin P60 ATPase-cont 46.1 18 0.00061 24.9 3.1 30 48-77 12-41 (78)
306 3t5x_A PCI domain-containing p 44.9 72 0.0025 26.8 7.5 35 82-116 14-48 (203)
307 2ahq_A Sigma-54, RNA polymeras 42.1 19 0.00065 24.5 2.7 34 532-569 21-54 (76)
308 3re2_A Predicted protein; meni 41.1 1.1E+02 0.0036 28.2 8.0 16 61-76 13-28 (472)
309 3re2_A Predicted protein; meni 40.1 1.9E+02 0.0065 26.6 9.4 44 353-396 276-324 (472)
310 2v6x_A Vacuolar protein sortin 39.9 46 0.0016 23.2 4.6 30 47-76 12-41 (85)
311 4b4t_O 26S proteasome regulato 38.2 2.6E+02 0.0089 26.3 11.1 24 338-361 131-154 (393)
312 2ynq_A ESSB; membrane protein, 38.1 1.5E+02 0.0052 23.6 8.9 90 47-142 7-99 (161)
313 2npm_A 14-3-3 domain containin 37.8 2.1E+02 0.0071 25.1 16.1 61 47-107 27-92 (260)
314 2cpt_A SKD1 protein, vacuolar 37.8 34 0.0012 25.7 3.8 29 48-76 18-46 (117)
315 3qhp_A Type 1 capsular polysac 37.0 1.5E+02 0.0051 23.2 10.6 85 487-578 2-86 (166)
316 3jy6_A Transcriptional regulat 36.9 1.1E+02 0.0038 26.8 8.1 89 484-573 4-93 (276)
317 3bu8_A Telomeric repeat-bindin 35.8 2E+02 0.0068 24.3 8.6 72 132-203 88-160 (235)
318 3iqu_A 14-3-3 protein sigma; s 35.8 2.1E+02 0.0072 24.6 17.0 63 47-109 7-71 (236)
319 4a1g_A Mitotic checkpoint seri 35.7 1.6E+02 0.0056 23.2 8.9 127 238-364 3-131 (152)
320 2rpa_A Katanin P60 ATPase-cont 35.3 42 0.0015 23.0 3.6 26 85-110 15-40 (78)
321 3uzd_A 14-3-3 protein gamma; s 34.7 2.3E+02 0.0078 24.6 17.1 49 242-293 148-201 (248)
322 3u84_A Menin; MLL, JUND, ledgf 34.0 2.4E+02 0.0081 26.6 9.2 43 319-361 298-345 (550)
323 2yhe_A SEC-alkyl sulfatase; hy 38.4 9.6 0.00033 39.2 0.0 54 46-99 459-512 (668)
324 3l6u_A ABC-type sugar transpor 32.1 75 0.0026 28.2 6.2 87 485-571 6-94 (293)
325 3kcq_A Phosphoribosylglycinami 31.9 2.1E+02 0.0072 24.2 8.3 86 485-580 6-95 (215)
326 3u84_A Menin; MLL, JUND, ledgf 31.8 2.9E+02 0.0098 26.1 9.3 91 304-409 261-365 (550)
327 3mv2_A Coatomer subunit alpha; 31.6 3E+02 0.01 25.0 14.5 30 48-77 114-143 (325)
328 4b4t_O 26S proteasome regulato 31.0 2.1E+02 0.007 27.0 9.1 93 89-184 83-196 (393)
329 2rgy_A Transcriptional regulat 29.3 1.4E+02 0.0046 26.5 7.3 88 485-572 6-97 (290)
330 4gq4_A Menin; tumor suppressor 29.1 3.7E+02 0.013 25.4 10.2 19 59-77 16-34 (489)
331 3bu8_A Telomeric repeat-bindin 29.1 2.6E+02 0.0089 23.6 8.1 59 282-340 88-154 (235)
332 4a5x_A MITD1, MIT domain-conta 28.9 93 0.0032 21.7 4.7 22 409-430 23-44 (86)
333 2xw6_A MGS, methylglyoxal synt 28.5 34 0.0012 26.5 2.5 35 554-588 62-98 (134)
334 1b93_A Protein (methylglyoxal 28.4 47 0.0016 26.3 3.3 35 554-588 70-106 (152)
335 3kjx_A Transcriptional regulat 28.1 3.4E+02 0.012 24.6 11.3 88 484-571 65-153 (344)
336 1fmt_A Methionyl-tRNA FMet for 27.7 1.4E+02 0.0046 27.2 6.9 83 486-577 2-91 (314)
337 2cfu_A SDSA1; SDS-hydrolase, l 27.7 93 0.0032 31.9 6.4 52 114-165 447-498 (658)
338 2dl1_A Spartin; SPG20, MIT, st 26.3 50 0.0017 24.6 2.9 14 384-397 19-32 (116)
339 3k4h_A Putative transcriptiona 25.6 1.1E+02 0.0036 27.1 5.9 89 485-573 6-100 (292)
340 4gq4_A Menin; tumor suppressor 25.2 4.4E+02 0.015 24.9 10.1 58 353-410 283-351 (489)
341 3clk_A Transcription regulator 24.6 1.2E+02 0.004 26.9 6.0 85 485-569 6-91 (290)
342 2v6x_A Vacuolar protein sortin 24.3 1.2E+02 0.0042 21.0 4.7 19 412-430 23-41 (85)
343 3brq_A HTH-type transcriptiona 24.1 1.3E+02 0.0044 26.6 6.2 87 485-572 17-108 (296)
344 2br9_A 14-3-3E, 14-3-3 protein 23.2 3.6E+02 0.012 23.2 16.7 49 242-293 147-200 (234)
345 3bbl_A Regulatory protein of L 23.1 1.9E+02 0.0065 25.4 7.1 87 486-572 3-94 (287)
346 3egc_A Putative ribose operon 22.6 91 0.0031 27.6 4.8 86 485-570 6-91 (291)
347 3d8u_A PURR transcriptional re 22.6 87 0.003 27.4 4.6 87 486-572 2-89 (275)
348 3l49_A ABC sugar (ribose) tran 22.3 1.9E+02 0.0066 25.3 7.0 86 485-571 3-91 (291)
349 3bqo_A Telomeric repeat-bindin 22.3 84 0.0029 26.1 3.8 33 56-88 125-157 (211)
350 2fep_A Catabolite control prot 22.2 1.8E+02 0.0061 25.7 6.7 88 485-572 14-102 (289)
351 3rot_A ABC sugar transporter, 22.1 1.2E+02 0.004 27.0 5.5 88 486-573 2-94 (297)
352 1wfd_A Hypothetical protein 15 22.0 1.8E+02 0.0062 20.6 5.2 14 170-183 28-41 (93)
353 1vmd_A MGS, methylglyoxal synt 21.6 64 0.0022 26.3 3.0 35 554-588 86-122 (178)
354 3da8_A Probable 5'-phosphoribo 21.3 3.6E+02 0.012 22.8 7.8 83 484-578 9-100 (215)
355 3ubw_A 14-3-3E, 14-3-3 protein 20.7 4.3E+02 0.015 23.1 18.9 49 242-293 173-226 (261)
356 3kke_A LACI family transcripti 20.5 1.4E+02 0.0047 26.7 5.6 85 485-570 13-98 (303)
357 3lxu_X Tripeptidyl-peptidase 2 20.5 9.4E+02 0.032 27.0 16.5 31 281-311 1122-1152(1354)
358 1wcr_A PTS system, N, N'-diace 20.5 1.3E+02 0.0044 22.0 4.1 29 47-75 17-45 (103)
359 2e2a_A Protein (enzyme IIA); h 20.4 1.3E+02 0.0043 22.1 4.1 29 47-75 19-47 (105)
360 3q0i_A Methionyl-tRNA formyltr 20.4 2.3E+02 0.0079 25.7 6.9 83 487-578 7-96 (318)
361 1cq4_A Protein (serine protein 20.3 52 0.0018 19.9 1.7 25 545-569 3-27 (47)
362 4aez_C MAD3, mitotic spindle c 20.1 4E+02 0.014 22.6 10.1 49 386-434 132-182 (223)
363 2o20_A Catabolite control prot 20.0 1.7E+02 0.0059 26.5 6.3 87 485-572 61-149 (332)
No 1
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=100.00 E-value=3.5e-55 Score=456.87 Aligned_cols=324 Identities=23% Similarity=0.340 Sum_probs=274.9
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 007634 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345 (595)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 345 (595)
+.++..+|.++..+|++++|+..|+++++++|++..++.++|.++..+|++++|+..|+++++++|+++.+++++|.++.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34566666777778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425 (595)
Q Consensus 346 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 425 (595)
.+|++++|+++|+++++++|++..++.++|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++++|.+.+
T Consensus 89 ~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~ 168 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM 168 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCChhhhhh----HHHHhhhccCCCcHHHHHHHHHHHHHHHh----h-ccccCCCCCCCCCCCCeEEEEecCC
Q 007634 426 EQCLKIDPDSRNAGQN----RLLAMNYINEGHDDKLFEAHRDWGKRFMR----L-YSQYTSWDNTKDPERPLVIGYVSPD 496 (595)
Q Consensus 426 ~~al~~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~l~igy~s~d 496 (595)
++++++.|+....... ....+.+.. +.........+++..... . .++...+...+.++++|||||||+|
T Consensus 169 ~kal~l~~~~~~~~~l~~~~~~~~l~~~~--~~~~~~aia~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~klrIGyvS~d 246 (723)
T 4gyw_A 169 KKLVSIVADQLEKNRLPSVHPHHSMLYPL--SHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSD 246 (723)
T ss_dssp HHHHHHHHHHHHTTCCCSSCTTGGGGSCC--CHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCCSSTTTTTCEEEEEEESC
T ss_pred HHHHHhChhHHhhccCcccchhhhhhhhc--CHHHHHHHHHHHHHhhhhhhhcccCccccCccccccccccceeeeechh
Confidence 9999998765432110 001111111 111111122233322211 1 1112222334557899999999999
Q ss_pred cccchHHHhhhhhhcccCCCceEEEEeeCCcc-CChhhHHHHHHhhhcCCceeeCCCC-CHHHHHHHHHhCCCcEEEeCC
Q 007634 497 YFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVK-ADAKTIRFREKVMKKGGIWRDIYGI-DEKKVAAMVREDKIDILVELT 574 (595)
Q Consensus 497 ~~~h~~~~~~~~~~~~~d~~~fe~~~y~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~i~~d~idilvdl~ 574 (595)
|++|||++|+.+++++||+++|||++|+.+++ .|..+.+++..+ ++|+++.++ +|.++|++|++|+|||||||+
T Consensus 247 f~~H~v~~~~~~~~~~~d~~~fei~~y~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~~a~~i~~d~iDIlidl~ 322 (723)
T 4gyw_A 247 FGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEA----NHFIDLSQIPCNGKAADRIHQDGIHILVNMN 322 (723)
T ss_dssp SSSSHHHHHHTTHHHHSCTTTEEEEEEESSCCCSCHHHHHHHHHS----SEEEEGGGCCCHHHHHHHHHHTTCSEEEESC
T ss_pred hccCcHHHHHHHHHHHhccCceeEEEEEcCCCCccHHHHHHHHhh----ccccccccCCcHHHHHHHHHhccceeEEecc
Confidence 99999999999999999999999999998865 466787777766 899999998 799999999999999999999
Q ss_pred CCCCCChhhhhhcCCCCcccC
Q 007634 575 GHTANNKLGMMACQPAPVQVC 595 (595)
Q Consensus 575 g~t~~~~~~~~a~r~APvq~~ 595 (595)
|||.++|++||++||||||||
T Consensus 323 g~t~~~r~~i~a~r~APvQv~ 343 (723)
T 4gyw_A 323 GYTKGARNELFALRPAPIQAM 343 (723)
T ss_dssp SSBTTCCTHHHHTCCSSEEEE
T ss_pred CCCCCCcchhhhcCCCCceee
Confidence 999999999999999999996
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=4.4e-46 Score=369.02 Aligned_cols=379 Identities=27% Similarity=0.381 Sum_probs=363.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q 007634 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131 (595)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 131 (595)
+.+|..++..|++++|+..++++++.+|+++.++..+|.++...|++++|...++++++.+|.++.++..+|.++...|+
T Consensus 3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007634 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211 (595)
Q Consensus 132 ~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~ 211 (595)
+++|+..|++++..+|++... +..+|.++...|++++|+..|+++++.+|+...++..+|.++...|++++|+
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 155 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDG-------YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAK 155 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 999999999999999998776 7778888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHH
Q 007634 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 291 (595)
Q Consensus 212 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 291 (595)
..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++...+.. +|.++...|++++|+..+++
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-------lg~~~~~~~~~~~A~~~~~~ 228 (388)
T 1w3b_A 156 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN-------LGNVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH-------HHHHHHTTTCTTHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-------HHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998765554 45555567899999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 007634 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371 (595)
Q Consensus 292 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 371 (595)
++...|++..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++..|.+..++
T Consensus 229 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 308 (388)
T 1w3b_A 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL 308 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHH
Q 007634 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (595)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 444 (595)
..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++++|++..++.++..
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~ 381 (388)
T 1w3b_A 309 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988877644
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.8e-42 Score=343.10 Aligned_cols=359 Identities=26% Similarity=0.379 Sum_probs=343.7
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
+.+...+..++..+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..|+++++.+|++..++..+|.
T Consensus 30 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 109 (388)
T 1w3b_A 30 PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAA 109 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 35567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (595)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (595)
++...|++++|+..|+++++.+|++... +..+|.++...|++++|+..|+++++.+|++..++..+|.++...
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 182 (388)
T 1w3b_A 110 ALVAAGDMEGAVQAYVSALQYNPDLYCV-------RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182 (388)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHCTTCTHH-------HHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHH-------HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999998776 677888888899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHH
Q 007634 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (595)
Q Consensus 205 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (595)
|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...|++...+..++ .++...|++++
T Consensus 183 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~-------~~~~~~g~~~~ 255 (388)
T 1w3b_A 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA-------CVYYEQGLIDL 255 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH-------HHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHH-------HHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999876655554 44555789999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 007634 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (595)
Q Consensus 285 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 364 (595)
|+..++++++..|+++.++..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..++++++..
T Consensus 256 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 335 (388)
T 1w3b_A 256 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335 (388)
T ss_dssp HHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 007634 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 417 (595)
Q Consensus 365 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 417 (595)
|++..++..+|.++...|++++|+..|+++++++|+++.+++++|.++..+|+
T Consensus 336 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999998875
No 4
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-40 Score=342.96 Aligned_cols=387 Identities=16% Similarity=0.118 Sum_probs=356.5
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
.++.++..|..++..|+|++|+..|+++++.+| ++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999 6999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHH--------------------------------------------------
Q 007634 127 KDEGRLVEAAESYHKALSADPSYKPAAECL-------------------------------------------------- 156 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~-------------------------------------------------- 156 (595)
...|++++|+..|++++...|.+.......
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999999999988543321110
Q ss_pred ----------------------HHHHHHhHHHHHH---hCChHHHHHHHHHHHh-----h--C-------CCCHHHHHHH
Q 007634 157 ----------------------AIVLTDLGTSLKL---AGNTQDGIQKYYEALK-----I--D-------PHYAPAYYNL 197 (595)
Q Consensus 157 ----------------------a~~~~~l~~~~~~---~~~~~~A~~~~~~~l~-----~--~-------~~~~~~~~~l 197 (595)
...+..+|.++.. .|++++|+..|+++++ . + |..+.++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 4445666776665 8999999999999999 5 3 4457789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhh
Q 007634 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (595)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (595)
|.++...|++++|+..++++++..|. ..++..+|.++...|++++|+..+++++...|.+...+..++. ++.
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~-------~~~ 315 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQ-------MNF 315 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHH-------HHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHH-------HHH
Confidence 99999999999999999999999999 9999999999999999999999999999999998776555544 455
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357 (595)
Q Consensus 278 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 357 (595)
..|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.++
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCCHH------HHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 358 QMALSIKPNFSQ------SLNNLGVVYTV---QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (595)
Q Consensus 358 ~~al~~~~~~~~------~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (595)
+++++..|++.. ++..+|.++.. .|++++|+..+++++..+|+++.++..+|.++...|++++|...|+++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999888855 99999999999 999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCChhhhhhH
Q 007634 429 LKIDPDSRNAGQNR 442 (595)
Q Consensus 429 l~~~p~~~~~~~~~ 442 (595)
++++|+++.++...
T Consensus 476 ~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 476 ADLARTMEEKLQAI 489 (514)
T ss_dssp HHHCSSHHHHHHHH
T ss_pred HHhccccHHHHHHH
Confidence 99999998887654
No 5
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=2e-39 Score=335.89 Aligned_cols=386 Identities=16% Similarity=0.149 Sum_probs=336.3
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
.++.++.+|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|+++.++..+|.++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHH---------------------------------------------------
Q 007634 127 KDEGRLVEAAESYHKALSADPSYKPAAEC--------------------------------------------------- 155 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~--------------------------------------------------- 155 (595)
...|++++|+..|+ ++...|+.......
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 99999999999996 77777764432110
Q ss_pred -------------HHHHHHH-----hHHHHHHhCChHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHcCCHHHH
Q 007634 156 -------------LAIVLTD-----LGTSLKLAGNTQDGIQKYYEALKIDPHYAP-------AYYNLGVVYSELMQYDTA 210 (595)
Q Consensus 156 -------------~a~~~~~-----l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~-------~~~~la~~~~~~g~~~~A 210 (595)
+...+.. .+......|++++|+..|+++++.+|+++. ++..+|.++...|++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 0011111 133334456899999999999999999865 577888999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHH
Q 007634 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 290 (595)
Q Consensus 211 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 290 (595)
+..++++++.+|. ..++..+|.++...|++++|+..++++++..|++...+..++. ++...|++++|+..++
T Consensus 263 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 263 QVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQ-------MYFILQDYKNAKEDFQ 334 (537)
T ss_dssp HHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHH-------HHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHH-------HHHhcCCHHHHHHHHH
Confidence 9999999999999 9999999999999999999999999999999998776555544 4455789999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH-
Q 007634 291 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ- 369 (595)
Q Consensus 291 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~- 369 (595)
+++...|.+..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++..|++..
T Consensus 335 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 335 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998776543
Q ss_pred -----HHHHHHHHHHhc----------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 370 -----SLNNLGVVYTVQ----------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 370 -----~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
.+..+|.++... |++++|+.+|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|+
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 356678899999 99999999999999999999999999999999999999999999999999999
Q ss_pred Chhhhhh
Q 007634 435 SRNAGQN 441 (595)
Q Consensus 435 ~~~~~~~ 441 (595)
+......
T Consensus 495 ~~~~~~~ 501 (537)
T 3fp2_A 495 MDEKLQA 501 (537)
T ss_dssp CHHHHHH
T ss_pred cHHHHHH
Confidence 8877543
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-38 Score=332.73 Aligned_cols=389 Identities=17% Similarity=0.145 Sum_probs=298.3
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---------------
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK--------------- 110 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------- 110 (595)
.+...+...+..+...|++++|+.+|++++...|++ ..++.+|.++...|++++|+..|++++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCL 160 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 456667788888888888888888888888777743 5556677777777777777666665521
Q ss_pred ---------------cCCCc-------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007634 111 ---------------LDPQN-------------------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (595)
Q Consensus 111 ---------------~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 156 (595)
..|.. ..++..+|.+|...|++++|+..|+++++.+|++...+..+
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 240 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQL 240 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence 23443 77899999999999999999999999999999877664433
Q ss_pred H----------------------------------------------------------------HHHHHhHHHHHHhCC
Q 007634 157 A----------------------------------------------------------------IVLTDLGTSLKLAGN 172 (595)
Q Consensus 157 a----------------------------------------------------------------~~~~~l~~~~~~~~~ 172 (595)
+ .++..++..+...|+
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSR 320 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTC
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcC
Confidence 2 234456777777788
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (595)
Q Consensus 173 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 252 (595)
+++|+..|+++++.+|.+..++..++.++...|++++|+..++++++..|.+..++..+|.+|...|++++|+.+|++++
T Consensus 321 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 400 (597)
T 2xpi_A 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSS 400 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 88888888888777777777777788888888888888888888877778778888888888888888888888888888
Q ss_pred hcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 007634 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 332 (595)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 332 (595)
+..|.+...+..++.+ +...|++++|++.|+++++..|++..++..+|.++...|++++|+..|+++++..|.
T Consensus 401 ~~~~~~~~~~~~l~~~-------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 473 (597)
T 2xpi_A 401 TMDPQFGPAWIGFAHS-------FAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY 473 (597)
T ss_dssp HHCTTCHHHHHHHHHH-------HHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HhCCCCHHHHHHHHHH-------HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 7777776555444443 344568888888888888888877788888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 007634 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (595)
Q Consensus 333 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (595)
++.++..+|.++...|++++|++.|+++++. +|+. ..++..+|.++...|++++|+..++++++.+|+++.++
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 8888888888888888888888888888776 4544 66778888888888888888888888888888878888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 007634 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (595)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (595)
..+|.+|...|++++|.++|+++++++|+++.++..+
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 590 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLL 590 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 8888888888888888888888888888877666553
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=6.3e-38 Score=317.08 Aligned_cols=334 Identities=16% Similarity=0.180 Sum_probs=283.9
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 007634 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (595)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (595)
.+.++..++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 44578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHH-----HHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH
Q 007634 124 ILYKDEGRLVEAAESYHKALSADPSYK---PAAECLAIV-----LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 195 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~~a~~-----~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 195 (595)
.++...|++++|+..|++++...|++. ..+..++.+ +..+|.++...|++++|+..|+++++..|.+..++.
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 181 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 999999999999999999999999988 776665554 667788999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHH-----HH
Q 007634 196 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA-----LT 270 (595)
Q Consensus 196 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~-----~~ 270 (595)
.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++...|++...+..+..+ ..
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 261 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 261 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999988765544221 23
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007634 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYAD----AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (595)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 346 (595)
.+|..+...|++++|+..|++++...|.++. .+..+|.++...|++++|+..++++++.+|+++.++..+|.++..
T Consensus 262 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 341 (450)
T 2y4t_A 262 ESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLI 341 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3455566666777777777777777776633 566667777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 007634 347 RDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377 (595)
Q Consensus 347 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 377 (595)
.|++++|+..|+++++++|+++.++..++.+
T Consensus 342 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 342 EEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 7777777777777777777777666666643
No 8
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.9e-37 Score=321.73 Aligned_cols=371 Identities=17% Similarity=0.083 Sum_probs=301.4
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH---
Q 007634 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL--- 156 (595)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~--- 156 (595)
.+...+..++..+...|++++|+..|++++...|+. ..+..+|.++...|++++|+..|++++.. |.+...+..+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHH
Confidence 467788999999999999999999999999999955 67788999999999999999999887544 2333322222
Q ss_pred ----------------------------------------HHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHH--
Q 007634 157 ----------------------------------------AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY-- 194 (595)
Q Consensus 157 ----------------------------------------a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~-- 194 (595)
..++..+|.++...|++++|+..|+++++.+|++..++
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 34577788999999999999999999999888755543
Q ss_pred ---------------------------------------------------------------------HHHHHHHHHcC
Q 007634 195 ---------------------------------------------------------------------YNLGVVYSELM 205 (595)
Q Consensus 195 ---------------------------------------------------------------------~~la~~~~~~g 205 (595)
..++.++...|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 44455555566
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHH
Q 007634 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285 (595)
Q Consensus 206 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 285 (595)
++++|+..|+++++..|.+..++..++.++...|++++|+..++++++..|++...+ ..++..+...|++++|
T Consensus 320 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 320 RFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTW-------LAVGIYYLCVNKISEA 392 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHH-------HHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHH-------HHHHHHHHHhccHHHH
Confidence 666666666666666666666666666666666666666666666666666554443 4455556667899999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 007634 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (595)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 365 (595)
+..|+++++..|.+..++..++.++...|++++|+..|+++++..|++..++..+|.++...|++++|+++|+++++..|
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 472 (597)
T 2xpi_A 393 RRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472 (597)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 007634 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------NPTY-AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (595)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (595)
.++.++..+|.++...|++++|+..|+++++. +|+. ..++..+|.++...|++++|+..|+++++++|++..+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 552 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence 99999999999999999999999999999988 6664 7899999999999999999999999999999998877
Q ss_pred hhhHHHHhhhccCCCcHHHHHHH
Q 007634 439 GQNRLLAMNYINEGHDDKLFEAH 461 (595)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~ 461 (595)
+..+ +..|...|+.+++.+..
T Consensus 553 ~~~l--~~~~~~~g~~~~A~~~~ 573 (597)
T 2xpi_A 553 HTAI--ALVYLHKKIPGLAITHL 573 (597)
T ss_dssp HHHH--HHHHHHTTCHHHHHHHH
T ss_pred HHHH--HHHHHHhCCHHHHHHHH
Confidence 7654 55666777776665443
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=3e-37 Score=312.08 Aligned_cols=359 Identities=17% Similarity=0.150 Sum_probs=317.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKAL 143 (595)
Q Consensus 64 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 143 (595)
...+...+.+++..+|.++..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++
T Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34566677888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH---HHHHHH------------HHHHHHcCCHH
Q 007634 144 SADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA---PAYYNL------------GVVYSELMQYD 208 (595)
Q Consensus 144 ~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~l------------a~~~~~~g~~~ 208 (595)
+.+|++..+ +..+|.++...|++++|+..|+++++.+|++. .++..+ |.++...|+++
T Consensus 88 ~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 88 QLKMDFTAA-------RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160 (450)
T ss_dssp HHCTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred hcCCCcHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 999998766 77888888999999999999999999999988 776655 66699999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHH
Q 007634 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288 (595)
Q Consensus 209 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 288 (595)
+|+..|+++++..|.+..++..+|.++...|++++|+..|+++++..|.+...+..++.++ ...|++++|+..
T Consensus 161 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~g~~~~A~~~ 233 (450)
T 2y4t_A 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLY-------YQLGDHELSLSE 233 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHH-------HHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-------HHcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999876655555544 456899999999
Q ss_pred HHHHHhhCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHH
Q 007634 289 YKKALYYNWHYADAMYNL------------GVAYGEMLKFDMAIVFYELAFHFNPHCA----EACNNLGVIYKDRDNLDK 352 (595)
Q Consensus 289 ~~~~~~~~~~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~~~~~~ 352 (595)
+++++...|++...+..+ |.++...|++++|+..|+++++..|.++ ..+..+|.++...|++++
T Consensus 234 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 234 VRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 999999999999887666 9999999999999999999999999985 478999999999999999
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH------------HHHcC----
Q 007634 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL------------YRDAG---- 416 (595)
Q Consensus 353 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~------------~~~~g---- 416 (595)
|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.++..++.+ |..+|
T Consensus 314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999954 44555
Q ss_pred -CHHHHHHHHHH-HHhcCCCCh
Q 007634 417 -SISLAIDAYEQ-CLKIDPDSR 436 (595)
Q Consensus 417 -~~~~A~~~~~~-al~~~p~~~ 436 (595)
+.+++.+.|++ +++.+|++.
T Consensus 394 ~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 394 AKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp CCTTHHHHHHHHHHHHSCGGGC
T ss_pred CCHHHHHHHHHHHHHHhCCCCC
Confidence 56778888886 888888764
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=6.3e-36 Score=292.63 Aligned_cols=341 Identities=16% Similarity=0.175 Sum_probs=293.9
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
+++.++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHH-----HHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 007634 127 KDEGRLVEAAESYHKALSADP---SYKPAAECLAI-----VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~---~~~~~~~~~a~-----~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 198 (595)
...|++++|+..|+++++..| ++...+..++. .+..+|.++...|++++|+..++++++..|.++.++..+|
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999 77777655532 2455688999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhh
Q 007634 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (595)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (595)
.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|++...+..+..+.
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~--------- 232 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK--------- 232 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH---------
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHH---------
Confidence 99999999999999999999999999999999999999999999999999999999999876543322211
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHH
Q 007634 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE----ACNNLGVIYKDRDNLDKAV 354 (595)
Q Consensus 279 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~----~~~~la~~~~~~~~~~~A~ 354 (595)
.......+|.++...|++++|+..++++++..|+++. ++..+|.++...|++++|+
T Consensus 233 --------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 233 --------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp --------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 1233455677777777777777777777777777653 3556777888888888888
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 007634 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416 (595)
Q Consensus 355 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 416 (595)
.+++++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..++.++..++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 88888888888788888888888888888888888888888888888777777777776654
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=6.5e-35 Score=285.42 Aligned_cols=329 Identities=16% Similarity=0.129 Sum_probs=299.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007634 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (595)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~ 160 (595)
+++.++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++..|++... +
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~ 74 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAA-------R 74 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-------H
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchH-------H
Confidence 467899999999999999999999999999999999999999999999999999999999999999998766 7
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 007634 161 TDLGTSLKLAGNTQDGIQKYYEALKIDP---HYAPAYYNL------------GVVYSELMQYDTALGCYEKAALERPMYA 225 (595)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~~~~~ 225 (595)
..+|.++...|++++|+..|+++++.+| ++..++..+ |.++...|++++|+..++++++..|.++
T Consensus 75 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 154 (359)
T 3ieg_A 75 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDA 154 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch
Confidence 7888888899999999999999999999 888888777 7999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 007634 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305 (595)
Q Consensus 226 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 305 (595)
.++..+|.++...|++++|+..+++++...|.+...+..++.++ ...|++++|+..++++++..|++..++..
T Consensus 155 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~-------~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (359)
T 3ieg_A 155 ELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLY-------YQLGDHELSLSEVRECLKLDQDHKRCFAH 227 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHH-------HHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-------HHcCCHHHHHHHHHHHHhhCccchHHHHH
Confidence 99999999999999999999999999999999887665555554 44679999999999999999999886655
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH----HHHHHHHHHHhc
Q 007634 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ----SLNNLGVVYTVQ 381 (595)
Q Consensus 306 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~ 381 (595)
+..+. .......+|.++...|++++|+..++++++..|++.. ++..+|.++...
T Consensus 228 ~~~~~----------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 228 YKQVK----------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHH----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHc
Confidence 44332 1345567799999999999999999999999999874 466799999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHH
Q 007634 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445 (595)
Q Consensus 382 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 445 (595)
|++++|+..++++++.+|+++.++..+|.++...|++++|..+|+++++++|++..++..+..+
T Consensus 286 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKA 349 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887765443
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-35 Score=304.09 Aligned_cols=356 Identities=14% Similarity=0.097 Sum_probs=331.2
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc-----------
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN----------- 115 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------- 115 (595)
++..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|.+
T Consensus 38 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (514)
T 2gw1_A 38 DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERN 117 (514)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHH
T ss_pred cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHH
Confidence 477899999999999999999999999999999999999999999999999999999999999887632
Q ss_pred --------------------------------------------------------------------HHHHHHHHHHHH
Q 007634 116 --------------------------------------------------------------------ACAHTHCGILYK 127 (595)
Q Consensus 116 --------------------------------------------------------------------~~~~~~la~~~~ 127 (595)
...+..+|.++.
T Consensus 118 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (514)
T 2gw1_A 118 LNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNL 197 (514)
T ss_dssp HHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 666777888777
Q ss_pred H---cCCHHHHHHHHHHHHh-----c--CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 007634 128 D---EGRLVEAAESYHKALS-----A--DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197 (595)
Q Consensus 128 ~---~g~~~~A~~~~~~~l~-----~--~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 197 (595)
. .|++++|+..|++++. . .|++.......+.++..+|.++...|++++|+..++++++.+|. ..++..+
T Consensus 198 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l 276 (514)
T 2gw1_A 198 YKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYM 276 (514)
T ss_dssp SSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHH
T ss_pred HhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHH
Confidence 6 8999999999999999 6 77776555566778999999999999999999999999999999 9999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhh
Q 007634 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (595)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (595)
|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.+... +..+|.++.
T Consensus 277 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~l~~~~~ 349 (514)
T 2gw1_A 277 ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFP-------YIQLACLAY 349 (514)
T ss_dssp HHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHH-------HHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHH-------HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999997654 445566666
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHH---cC
Q 007634 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE------ACNNLGVIYKD---RD 348 (595)
Q Consensus 278 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~------~~~~la~~~~~---~~ 348 (595)
..|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.++. ++..+|.++.. .|
T Consensus 350 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred HcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 7889999999999999999999999999999999999999999999999999888755 99999999999 99
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 007634 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (595)
Q Consensus 349 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (595)
++++|+..+++++...|++..++..+|.++...|++++|...|+++++++|+++.++..+..
T Consensus 430 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 430 NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988877643
No 13
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.9e-35 Score=299.47 Aligned_cols=381 Identities=14% Similarity=0.050 Sum_probs=305.3
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-----
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEK---------DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD----- 112 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----- 112 (595)
.+..+-.+|.++...|++++|++.|+++++. +|.....+.++|.+|..+|++++|+..+++++++.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3556677999999999999999999999875 67778899999999999999999999999999863
Q ss_pred ---CCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC
Q 007634 113 ---PQNACAHTHCGILYKDE--GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187 (595)
Q Consensus 113 ---p~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 187 (595)
+..+.++..+|.++... +++++|+.+|+++++++|+++..+..++.++..+ ...++.++|++.++++++++
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l----~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL----DNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH----HHSCCCCCTHHHHHHHHHHC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----cCchHHHHHHHHHHHHhhcC
Confidence 35677888888777664 5799999999999999999998865555444333 35688899999999999999
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHh
Q 007634 188 PHYAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263 (595)
Q Consensus 188 ~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 263 (595)
|+++.++..+|..+.. .|++++|+.++++++..+|..+.++..+|.++...|++++|+..++++++..|++..++.
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 285 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC 285 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 9999999999877665 467889999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHhhhh------------hhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 007634 264 NMAIALTDLGTK------------VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331 (595)
Q Consensus 264 ~~~~~~~~l~~~------------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 331 (595)
.++.++...+.. ....+.+++|+..+++++..+|....++..+|.++...|++++|+.+|+++++..|
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 888877654322 22334578899999999999999999999999999999999999999999999988
Q ss_pred CCHH---HHHHHHHH-HHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 007634 332 HCAE---ACNNLGVI-YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407 (595)
Q Consensus 332 ~~~~---~~~~la~~-~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 407 (595)
++.. ++..+|.+ +...|++++|+.+|++++++.|++..... ....+...+++++..+|+++.++..
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~----------~~~~l~~~~~~~l~~~p~~~~~~~~ 435 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK----------MKDKLQKIAKMRLSKNGADSEALHV 435 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH----------HHHHHHHHHHHHHHHCC-CTTHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH----------HHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 7643 45666655 45789999999999999999998765332 2345567788999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 007634 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (595)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (595)
+|.+|..+|++++|+++|++|+++.|.++.+...
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHCC----------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 9999999999999999999999999999877543
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1.4e-34 Score=299.52 Aligned_cols=353 Identities=17% Similarity=0.163 Sum_probs=311.8
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHH------
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA------ 118 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------ 118 (595)
+.++..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+ ++..+|+....
T Consensus 56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~ 134 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPML 134 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999995 77776654322
Q ss_pred --------------------------------------------------------------HHHHH--------HHHHH
Q 007634 119 --------------------------------------------------------------HTHCG--------ILYKD 128 (595)
Q Consensus 119 --------------------------------------------------------------~~~la--------~~~~~ 128 (595)
...++ .....
T Consensus 135 ~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 214 (537)
T 3fp2_A 135 ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVA 214 (537)
T ss_dssp HHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHH
Confidence 11111 12223
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 007634 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208 (595)
Q Consensus 129 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~ 208 (595)
.|++++|+..|+++++..|++...+..++.++..+|.++...|++++|+..++++++.+|+ ..++..+|.++...|+++
T Consensus 215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHH
Confidence 3589999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHH
Q 007634 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 288 (595)
Q Consensus 209 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 288 (595)
+|+..++++++.+|.++.++..+|.++...|++++|+..+++++...|.+...+..++ .++...|++++|+..
T Consensus 294 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la-------~~~~~~g~~~~A~~~ 366 (537)
T 3fp2_A 294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA-------CLLYKQGKFTESEAF 366 (537)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHH-------HHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHHHcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999876655554 445557899999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHc----------CCHHH
Q 007634 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA------EACNNLGVIYKDR----------DNLDK 352 (595)
Q Consensus 289 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~------~~~~~la~~~~~~----------~~~~~ 352 (595)
++++++..|+++.++..+|.++...|++++|+..|+++++..|.+. ..+..+|.++... |++++
T Consensus 367 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 446 (537)
T 3fp2_A 367 FNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNA 446 (537)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHH
Confidence 9999999999999999999999999999999999999999876543 3466778999998 99999
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 007634 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406 (595)
Q Consensus 353 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 406 (595)
|+.+|+++++.+|++..++..+|.++...|++++|+.+|+++++++|+..+...
T Consensus 447 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 447 AIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999999999999999999999999999999999887654
No 15
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=100.00 E-value=1.3e-33 Score=293.38 Aligned_cols=303 Identities=17% Similarity=0.114 Sum_probs=247.6
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358 (595)
Q Consensus 279 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 358 (595)
.|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCC
Q 007634 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA---GSISLAIDAYEQCLKIDPDS 435 (595)
Q Consensus 359 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~ 435 (595)
++++.+|++..++.++|.++...|++++|+..|+++++.+|++..++..+|.++..+ |++++|.+.|+++++.+|++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999998
Q ss_pred hhhhhhHHHHhhhccCCCcHHHHHHHHHHHHHH-HhhccccCCCCCCCCCCCCeEEEEecCCcccchHHHhhhhhhcc--
Q 007634 436 RNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRF-MRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVY-- 512 (595)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~igy~s~d~~~h~~~~~~~~~~~~-- 512 (595)
...+..+. ..+........+.|..+. .....+ ..+.+..+++++||||++++|..|++++++..++++
T Consensus 162 ~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~ 232 (568)
T 2vsy_A 162 VEPFAFLS-------EDASAAEQLACARTRAQAIAASVRP--LAPTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQ 232 (568)
T ss_dssp SCHHHHTT-------SCCCHHHHHHHHHHHHHHHHTTCCC--CCCCCCCSSSCEEEEEEESCSSSSHHHHHHHHHHHHHH
T ss_pred cChHHHhC-------CCCHHHHHHHHHHHHHhccCcccCC--CCCCCCCCCCCeEEEEECcccccChHHHHHHHHHhhcc
Confidence 77654321 334444444445555433 322222 122333457899999999999999999999999999
Q ss_pred cCCCceEEEEeeCCcc-CChhhHHHHHHhhhcCCceeeCCCCCHHHHHHHHHhCCCcEEEeCCCCCCCChhhhhhcCCCC
Q 007634 513 HDYQNYKVVVYSAVVK-ADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAP 591 (595)
Q Consensus 513 ~d~~~fe~~~y~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~AP 591 (595)
+++.+|||++|+.++. .+..+.+++... .|+++.+++..++++.|+++++||+++++|||.++++.+++.|++|
T Consensus 233 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~i~~~~~Div~~~~~~~~~~~~~~~~~~~~~ 307 (568)
T 2vsy_A 233 RRQPDLQMHLFATSGDDGSTLRTRLAQAS-----TLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAP 307 (568)
T ss_dssp HHCTTEEEEEEESSCCCSCHHHHHHHHTS-----EEEECTTCCHHHHHHHHHHTTCSEEEECSSCTTCSSCHHHHTCCSS
T ss_pred CCcccEEEEEEECCCCCccHHHHHHHhcC-----eEEECCCCCHHHHHHHHHhCCCCEEEECCCCCCcchHHHHhcCCCc
Confidence 9999999999998654 456666665532 6888888889999999999999999999999999999999999999
Q ss_pred cccC
Q 007634 592 VQVC 595 (595)
Q Consensus 592 vq~~ 595 (595)
||++
T Consensus 308 ~~~~ 311 (568)
T 2vsy_A 308 VQVN 311 (568)
T ss_dssp EEEE
T ss_pred eeEe
Confidence 9874
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.2e-32 Score=264.11 Aligned_cols=301 Identities=19% Similarity=0.189 Sum_probs=225.3
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
+.+.+.++.+|..++..|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|+++.++..+|.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 34566777788888888888888888888888888888788778888888888888888888888888888888888888
Q ss_pred HHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007634 125 LYKDEG-RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (595)
Q Consensus 125 ~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 203 (595)
++...| ++++|+..|++++..+|.+... +..+|.++...|++++|+..++++++..|+...++..+|.++..
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPA-------WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHH-------HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHH-------HHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 888888 7888888888888877776655 66777777777888888888888877777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHH
Q 007634 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 283 (595)
Q Consensus 204 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 283 (595)
.|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...+.....
T Consensus 172 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------------------- 229 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE---------------------- 229 (330)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCS----------------------
T ss_pred HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccc----------------------
Confidence 7777778777777777777777777777777777777777777777777655432100
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 007634 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (595)
Q Consensus 284 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 363 (595)
...|....++..+|.++...|++++|+.+++++++.+|+++.++..+|.++...|++++|+.+|++++++
T Consensus 230 ----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 230 ----------VTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp ----------CTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred ----------ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 0013445677777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCHHHHHHHHHHH-HhcCCH
Q 007634 364 KPNFSQSLNNLGVVY-TVQGKM 384 (595)
Q Consensus 364 ~~~~~~~~~~la~~~-~~~g~~ 384 (595)
+|++..++..++.++ ...|+.
T Consensus 300 ~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 300 RRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp CSCCHHHHHHHHHHHHTTTTC-
T ss_pred CCCchHHHHHHHHHHHHHhCch
Confidence 777777777777766 444443
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.3e-32 Score=264.06 Aligned_cols=297 Identities=16% Similarity=0.145 Sum_probs=180.3
Q ss_pred HHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007634 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (595)
Q Consensus 75 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 154 (595)
+...|+++..+..+|..++..|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|++...
T Consensus 15 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-- 92 (330)
T 3hym_B 15 VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVS-- 92 (330)
T ss_dssp -----CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH--
T ss_pred HhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHH--
Confidence 334444555555555555555555555555555555555555555555555555555555555555555555544433
Q ss_pred HHHHHHHHhHHHHHHhC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007634 155 CLAIVLTDLGTSLKLAG-NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233 (595)
Q Consensus 155 ~~a~~~~~l~~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 233 (595)
+..+|.++...| ++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++..|.+...+..+|.
T Consensus 93 -----~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 167 (330)
T 3hym_B 93 -----WFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGL 167 (330)
T ss_dssp -----HHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred -----HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 444444445555 45555555555555555444445555555555555555555555544444444444444444
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 007634 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 313 (595)
Q Consensus 234 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 313 (595)
++...|++++|+..+ +++++..|.++.++..+|.++...
T Consensus 168 ~~~~~~~~~~A~~~~-----------------------------------------~~al~~~~~~~~~~~~l~~~~~~~ 206 (330)
T 3hym_B 168 EYGLTNNSKLAERFF-----------------------------------------SQALSIAPEDPFVMHEVGVVAFQN 206 (330)
T ss_dssp HHHHTTCHHHHHHHH-----------------------------------------HHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHH-----------------------------------------HHHHHhCCCChHHHHHHHHHHHHc
Confidence 444444444444444 444444444556666777777777
Q ss_pred CCHHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCH
Q 007634 314 LKFDMAIVFYELAFHFN---------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 384 (595)
Q Consensus 314 ~~~~~A~~~~~~~l~~~---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 384 (595)
|++++|+..++++++.. |..+.++..+|.++...|++++|+.+++++++..|++..++..+|.++...|++
T Consensus 207 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 286 (330)
T 3hym_B 207 GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNF 286 (330)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCH
T ss_pred ccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccH
Confidence 77777777777777764 556778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHcCCHH
Q 007634 385 DAAAEMIEKAIAANPTYAEAYNNLGVLY-RDAGSIS 419 (595)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~ 419 (595)
++|+.+++++++++|+++.++..++.++ ...|+.+
T Consensus 287 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 287 ENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 8888888888888888888888888877 4555543
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=9.5e-33 Score=271.20 Aligned_cols=302 Identities=17% Similarity=0.171 Sum_probs=227.3
Q ss_pred HHHcCCHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 126 YKDEGRLVEAAE-SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (595)
Q Consensus 126 ~~~~g~~~~A~~-~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (595)
+...|++++|+. .|++++...|+++.. .+..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLR---DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTT---TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCccc---chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 334456666666 666666655554311 0112455566666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhH---------HHHHHHhhhh
Q 007634 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM---------AIALTDLGTK 275 (595)
Q Consensus 205 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~---------~~~~~~l~~~ 275 (595)
|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++...|.+...+... ...+..++.+
T Consensus 112 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 112 EQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666655433211 1111233444
Q ss_pred hhhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 007634 276 VKLEGDINQGVAYYKKALYYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 353 (595)
Q Consensus 276 ~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A 353 (595)
+ ..|++++|+..+++++...|. .+.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|
T Consensus 192 ~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 L-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp H-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred h-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHH
Confidence 4 578999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-----------HHHHHHHHHHHHHcCCHHHHH
Q 007634 354 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-----------AEAYNNLGVLYRDAGSISLAI 422 (595)
Q Consensus 354 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------~~~~~~la~~~~~~g~~~~A~ 422 (595)
+.+|+++++.+|++..++..+|.++...|++++|+.+|++++++.|++ ..++..+|.++..+|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 999999999999999999999999999999999999999999998887 899999999999999999999
Q ss_pred HHHHHHHhc
Q 007634 423 DAYEQCLKI 431 (595)
Q Consensus 423 ~~~~~al~~ 431 (595)
.+++++++.
T Consensus 351 ~~~~~~l~~ 359 (368)
T 1fch_A 351 AADARDLST 359 (368)
T ss_dssp HHHTTCHHH
T ss_pred HhHHHHHHH
Confidence 999877764
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=100.00 E-value=3.4e-29 Score=255.18 Aligned_cols=363 Identities=18% Similarity=0.157 Sum_probs=322.1
Q ss_pred CCchHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHcCCCcH
Q 007634 45 GFEGKDALSYANILRS----RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM----QNMGRLAFDSFSEAVKLDPQNA 116 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~ 116 (595)
..+++..+.+|..+.. .+++++|+.+|+++.+. .++.+++.+|.++.. .+++++|+.+|+++.+. +++
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~ 111 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLP 111 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence 4578899999999999 99999999999999986 689999999999999 99999999999999875 588
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHH----hCChHHHHHHHHHHHhhCC
Q 007634 117 CAHTHCGILYKD----EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYYEALKIDP 188 (595)
Q Consensus 117 ~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~----~~~~~~A~~~~~~~l~~~~ 188 (595)
.+++.+|.+|.. .+++++|+.+|+++.+. .++.+ +..+|.++.. .+++++|+.+|+++++.
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a-------~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-- 180 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSG-------QQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-- 180 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH-------HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH-------HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--
Confidence 999999999999 89999999999999875 34454 7778888877 78999999999999986
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHH
Q 007634 189 HYAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEI 260 (595)
Q Consensus 189 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~ 260 (595)
.++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++++.. ++.
T Consensus 181 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~ 256 (490)
T 2xm6_A 181 GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--NSI 256 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT--CHH
T ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHH
Confidence 579999999999999 89999999999999876 468999999999997 899999999999998763 344
Q ss_pred HHhhHHHHHHHhhhhhhh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhhCC
Q 007634 261 AKNNMAIALTDLGTKVKL----EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM-----LKFDMAIVFYELAFHFNP 331 (595)
Q Consensus 261 ~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~~l~~~~ 331 (595)
+.. .+|.++.. .+++++|+.+|+++.+. .++.+++.+|.++... +++++|+.+|+++.+.
T Consensus 257 a~~-------~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-- 325 (490)
T 2xm6_A 257 AQF-------RLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-- 325 (490)
T ss_dssp HHH-------HHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--
T ss_pred HHH-------HHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--
Confidence 444 44444444 78999999999999865 6789999999999998 9999999999999986
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCcHHH
Q 007634 332 HCAEACNNLGVIYKDRD---NLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEA 404 (595)
Q Consensus 332 ~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 404 (595)
.++.+++.+|.++...| ++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++++.. ++.+
T Consensus 326 ~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a 401 (490)
T 2xm6_A 326 GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAA 401 (490)
T ss_dssp TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHH
Confidence 46789999999999877 899999999999987 679999999999999 899999999999999864 6899
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC---Chhhhhh
Q 007634 405 YNNLGVLYRD----AGSISLAIDAYEQCLKIDPD---SRNAGQN 441 (595)
Q Consensus 405 ~~~la~~~~~----~g~~~~A~~~~~~al~~~p~---~~~~~~~ 441 (595)
++++|.+|.. .+++++|..+|+++++..|+ ++.+..+
T Consensus 402 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~ 445 (490)
T 2xm6_A 402 QVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNIT 445 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHH
Confidence 9999999999 89999999999999999965 5555443
No 20
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.3e-30 Score=265.22 Aligned_cols=361 Identities=13% Similarity=0.037 Sum_probs=290.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 007634 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKL---------DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (595)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 151 (595)
.+..+..+|.++..+|++++|++.|++++++ +|....++.++|.+|..+|++++|+.++++++++.+....
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3567888999999999999999999999986 5667788999999999999999999999999886432110
Q ss_pred H-HHHHHHHHHHhHHHHHH--hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCH
Q 007634 152 A-AECLAIVLTDLGTSLKL--AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE---LMQYDTALGCYEKAALERPMYA 225 (595)
Q Consensus 152 ~-~~~~a~~~~~l~~~~~~--~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~ 225 (595)
. ....+.++..+|.++.. .+++++|+.+|+++++++|+++.++..++.++.. .++.++|++.++++++++|+++
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 0 00113346666665554 4579999999999999999999999999988654 5778899999999999999999
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHH
Q 007634 226 EAYCNMGVIYKNR----GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 301 (595)
Q Consensus 226 ~~~~~la~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 301 (595)
.++..+|..+... +++++|+.++++++...|.....+..++.+ +...|++++|+..++++++.+|+++.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~-------~~~~~~~~~A~~~~~~al~~~p~~~~ 282 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKF-------YRRKDEPDKAIELLKKALEYIPNNAY 282 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHH-------HHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHH-------HHHcCchHHHHHHHHHHHHhCCChHH
Confidence 9999998776654 678899999999999999988766555554 45578999999999999999999999
Q ss_pred HHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 007634 302 AMYNLGVAYGEM-------------------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 362 (595)
Q Consensus 302 ~~~~la~~~~~~-------------------~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 362 (595)
++..+|.+|... +.+++|+..+++++..+|....++..+|.++...|++++|+.+|+++++
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 999999988653 3467899999999999999999999999999999999999999999999
Q ss_pred cCCCCHH---HHHHHHHH-HHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 007634 363 IKPNFSQ---SLNNLGVV-YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (595)
Q Consensus 363 ~~~~~~~---~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (595)
+.|++.. ++..+|.+ +...|++++|+..|+++++++|++...... ...+...++++++.+|+++.+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~----------~~~l~~~~~~~l~~~p~~~~~ 432 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM----------KDKLQKIAKMRLSKNGADSEA 432 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH----------HHHHHHHHHHHHHHCC-CTTH
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH----------HHHHHHHHHHHHHhCCCCHHH
Confidence 9887643 45667754 457899999999999999999997654332 245667888999999999988
Q ss_pred hhhHHHHhhhccCCCcHHHHHH
Q 007634 439 GQNRLLAMNYINEGHDDKLFEA 460 (595)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~ 460 (595)
+.++ +..|...|+.+++.+.
T Consensus 433 ~~~L--G~~~~~~g~~~~A~~~ 452 (472)
T 4g1t_A 433 LHVL--AFLQELNEKMQQADED 452 (472)
T ss_dssp HHHH--HHHHHHHHHCC-----
T ss_pred HHHH--HHHHHHcCCHHHHHHH
Confidence 8775 5555555555554433
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=6.5e-32 Score=265.24 Aligned_cols=312 Identities=17% Similarity=0.183 Sum_probs=227.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHcCCCcH----HHHHHHHHHHHHcCCHHHH
Q 007634 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFD-SFSEAVKLDPQNA----CAHTHCGILYKDEGRLVEA 135 (595)
Q Consensus 61 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A 135 (595)
.+.|..+...++.+....|. ++...|++++|+. .|++++...|+++ ..++.+|.++...|++++|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 83 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRDAE----------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNA 83 (368)
T ss_dssp ------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHH
T ss_pred cccHHHHHHHHHHHHcCCch----------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHH
Confidence 34444444444444444332 3445577777777 7777777776653 4577777777777777777
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 136 AESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215 (595)
Q Consensus 136 ~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 215 (595)
+..|+++++.+|.+... +..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++
T Consensus 84 ~~~~~~al~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (368)
T 1fch_A 84 VLLFEAAVQQDPKHMEA-------WQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR 156 (368)
T ss_dssp HHHHHHHHHSCTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHH-------HHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77777777777776654 56667777777777777777777777777777777777777777788888888888
Q ss_pred HHHHhCCCCHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHhcCCC--cHHHHhhHHHHHHHhhhhhh
Q 007634 216 KAALERPMYAEAYC----------------NMGVIYKNRGDLESAIACYERCLAVSPN--FEIAKNNMAIALTDLGTKVK 277 (595)
Q Consensus 216 ~al~~~~~~~~~~~----------------~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~l~~~~~ 277 (595)
++++..|.+...+. .++.++ ..|++++|+..++++++..|. ....+ ..+|.++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~-------~~l~~~~~ 228 (368)
T 1fch_A 157 DWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQ-------CGLGVLFN 228 (368)
T ss_dssp HHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHH-------HHHHHHHH
T ss_pred HHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHH-------HHHHHHHH
Confidence 77777777655543 456665 888888888888888888888 44444 44455555
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357 (595)
Q Consensus 278 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 357 (595)
..|++++|+..+++++...|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|
T Consensus 229 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 308 (368)
T 1fch_A 229 LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 308 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56788999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007634 358 QMALSIKPNF-----------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (595)
Q Consensus 358 ~~al~~~~~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (595)
++++++.|++ ..++..+|.++..+|++++|...++++++.
T Consensus 309 ~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 309 LEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 9999998887 889999999999999999999988877654
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=100.00 E-value=2.1e-31 Score=261.15 Aligned_cols=291 Identities=20% Similarity=0.162 Sum_probs=249.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216 (595)
Q Consensus 137 ~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 216 (595)
..+.+.+...+.++.. -+..++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++
T Consensus 48 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 124 (365)
T 4eqf_A 48 SASEKGYYFHTENPFK---DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQR 124 (365)
T ss_dssp -----CCCCCSSCTTT---TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhhcccCCccc---chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555555544321 1123778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhH---HHHHHHhhhhhhhcCCHHHHHHHHHHHH
Q 007634 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM---AIALTDLGTKVKLEGDINQGVAYYKKAL 293 (595)
Q Consensus 217 al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 293 (595)
+++.+|++..++..+|.++...|++++|+..++++++..|++...+..+ +.++..+|.++...|++++|+..+++++
T Consensus 125 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 204 (365)
T 4eqf_A 125 CLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAA 204 (365)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998876555444 5566677888888999999999999999
Q ss_pred hhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 007634 294 YYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371 (595)
Q Consensus 294 ~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 371 (595)
...|. ++.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+.+|+++++.+|++..++
T Consensus 205 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 284 (365)
T 4eqf_A 205 HQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSR 284 (365)
T ss_dssp HHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHH
Confidence 99999 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPT------------YAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (595)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (595)
..+|.++...|++++|+.+|++++++.|+ +..++..++.++..+|+.+.+.....+.+.
T Consensus 285 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 285 YNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 99999999999999999999999999876 357899999999999999998887766443
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.97 E-value=1.6e-27 Score=242.74 Aligned_cols=375 Identities=16% Similarity=0.092 Sum_probs=318.5
Q ss_pred CchHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHcCCCcHH
Q 007634 46 FEGKDALSYANILRS----RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM----QNMGRLAFDSFSEAVKLDPQNAC 117 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~ 117 (595)
.++..++.+|..+.. .+++++|+.+|+++.+. .++.+++.+|.++.. .+++++|+..|+++.+. +++.
T Consensus 73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~ 148 (490)
T 2xm6_A 73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDS 148 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence 467889999999999 99999999999999875 588999999999999 89999999999999875 5799
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHH----hCChHHHHHHHHHHHhhCCC
Q 007634 118 AHTHCGILYKD----EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYYEALKIDPH 189 (595)
Q Consensus 118 ~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~----~~~~~~A~~~~~~~l~~~~~ 189 (595)
+++.+|.+|.. .+++++|+.+|+++++. .+..+ +..+|.++.. .+++++|+.+|+++.+. .
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a-------~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~ 217 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWS-------CNQLGYMYSRGLGVERNDAISAQWYRKSATS--G 217 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH-------HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH-------HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--C
Confidence 99999999998 89999999999999986 34444 7778888887 89999999999999875 4
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHH
Q 007634 190 YAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEIA 261 (595)
Q Consensus 190 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~ 261 (595)
++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.++.. .+++++|+.+|+++.+. .++.+
T Consensus 218 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a 293 (490)
T 2xm6_A 218 DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDG 293 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHH
Confidence 68999999999997 89999999999999876 568899999999999 99999999999999876 44545
Q ss_pred HhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCHHHHH
Q 007634 262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML---KFDMAIVFYELAFHFNPHCAEACN 338 (595)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~l~~~~~~~~~~~ 338 (595)
...++.++.... ....+++++|+..|+++.+. .++.+++.+|.++...| ++++|+.+|+++++. .++.+++
T Consensus 294 ~~~Lg~~y~~~~--~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~ 367 (490)
T 2xm6_A 294 QYYLAHLYDKGA--EGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQF 367 (490)
T ss_dssp HHHHHHHHHHCB--TTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHHHcCC--CCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHH
Confidence 444444443310 00128999999999999986 56789999999999877 899999999999987 6799999
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCC---cHHHHHH
Q 007634 339 NLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPT---YAEAYNN 407 (595)
Q Consensus 339 ~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~---~~~~~~~ 407 (595)
.+|.+|.. .+++++|+.+|+++.+. .++.++.++|.+|.. .+++++|..+|+++++..|+ ++.+..+
T Consensus 368 ~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~ 445 (490)
T 2xm6_A 368 NLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNIT 445 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHH
Confidence 99999999 89999999999999986 468999999999998 89999999999999999954 8889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhc
Q 007634 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI 449 (595)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 449 (595)
++.++.. +.+.|.+..++.++..|+...+....+.+...+
T Consensus 446 l~~~~~~--~~~~a~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 485 (490)
T 2xm6_A 446 EKKLTAK--QLQQAELLSQQYIEKYAPEAWARMQKLKAQSAV 485 (490)
T ss_dssp HTTSCHH--HHHHHHHHHHHHHHHHCHHHHHHHHHHSCCCCC
T ss_pred HHhcCHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988764 456666667777776777666655444433333
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.97 E-value=8.7e-28 Score=247.36 Aligned_cols=415 Identities=10% Similarity=-0.009 Sum_probs=312.2
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
+.+.+.++.++.. ...|++++|...|+++++.+|.+...|..++..+...|++++|...|++++...| +...|..++.
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~ 87 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLS 87 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 4578889999984 7899999999999999999999999999999999999999999999999999999 6778888875
Q ss_pred -HHHHcCCHHHHHH----HHHHHHhc---CCCCHHHHHHHHHHHHHhHHHHHH---------hCChHHHHHHHHHHHhhC
Q 007634 125 -LYKDEGRLVEAAE----SYHKALSA---DPSYKPAAECLAIVLTDLGTSLKL---------AGNTQDGIQKYYEALKID 187 (595)
Q Consensus 125 -~~~~~g~~~~A~~----~~~~~l~~---~~~~~~~~~~~a~~~~~l~~~~~~---------~~~~~~A~~~~~~~l~~~ 187 (595)
+....|++++|.+ .|++++.. +|.+... |...+..... .|++++|..+|+++++ .
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~-------w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~ 159 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQI-------WVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-N 159 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHH-------HHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-S
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHH-------HHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-c
Confidence 4456788877765 78888764 3444444 3344443333 6889999999999999 5
Q ss_pred CCCH--HHHHHHHHHH-------------HHcCCHHHHHHHHHH------HHHh-----CCCC-------HHHHHHHHHH
Q 007634 188 PHYA--PAYYNLGVVY-------------SELMQYDTALGCYEK------AALE-----RPMY-------AEAYCNMGVI 234 (595)
Q Consensus 188 ~~~~--~~~~~la~~~-------------~~~g~~~~A~~~~~~------al~~-----~~~~-------~~~~~~la~~ 234 (595)
|... ..|....... ...+++..|...+.. .++. .|.. ...|......
T Consensus 160 P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~ 239 (530)
T 2ooe_A 160 PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQW 239 (530)
T ss_dssp CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHH
Confidence 6543 3333322221 124567777776665 3322 2221 2344444333
Q ss_pred HHHc----CCH----HHHHHHHHHHHhcCCCcHHHHhhHHHHHHH-------hhhhhhhcCCHHHHHHHHHHHHh-hCCC
Q 007634 235 YKNR----GDL----ESAIACYERCLAVSPNFEIAKNNMAIALTD-------LGTKVKLEGDINQGVAYYKKALY-YNWH 298 (595)
Q Consensus 235 ~~~~----~~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~A~~~~~~~~~-~~~~ 298 (595)
.... ++. ..++..|++++...|.++..|..++..+.. .|.......-.++|+..|+++++ ..|+
T Consensus 240 e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~ 319 (530)
T 2ooe_A 240 EKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 319 (530)
T ss_dssp HHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred HHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence 2221 232 478889999999999999999999888775 45332111125789999999997 7899
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 007634 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA-EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377 (595)
Q Consensus 299 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 377 (595)
+..+|..+|.++...|++++|...|+++++..|.++ .+|..++.++...|++++|...|+++++..|.....+...+.+
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM 399 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 999999999999999999999999999999999885 6899999999999999999999999999988877777766665
Q ss_pred -HHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHH--HhhhccCCCc
Q 007634 378 -YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL--AMNYINEGHD 454 (595)
Q Consensus 378 -~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~--~~~~~~~~~~ 454 (595)
+...|++++|...|+++++.+|+++.+|..++.++...|+.++|...|++++...|.++......+. .......|+.
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 3468999999999999999999999999999999999999999999999999988776652222211 1112345776
Q ss_pred HHHHHHHHHHHHHHH
Q 007634 455 DKLFEAHRDWGKRFM 469 (595)
Q Consensus 455 ~~~~~~~~~~~~~~~ 469 (595)
+.......+....++
T Consensus 480 ~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 480 ASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHCc
Confidence 666555444444333
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.97 E-value=1.8e-29 Score=243.32 Aligned_cols=277 Identities=19% Similarity=0.205 Sum_probs=253.8
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 007634 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (595)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 239 (595)
++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHhhHH------HHHHHh-hh-hhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 007634 240 DLESAIACYERCLAVSPNFEIAKNNMA------IALTDL-GT-KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 311 (595)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~~~~~~~~------~~~~~l-~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 311 (595)
++++|+..+++++...|.+...+..+. .....+ +. ++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 104 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 183 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN 183 (327)
T ss_dssp CHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 999999999999999998765444331 111112 33 4677889999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007634 312 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 391 (595)
Q Consensus 312 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 391 (595)
..|++++|+..++++++.+|+++.++..+|.++...|++++|+.+++++++..|++..++..+|.++...|++++|+..+
T Consensus 184 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 263 (327)
T 3cv0_A 184 LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQL 263 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 392 EKAIAANPT------------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 392 ~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
+++++..|+ +..++..+|.++..+|++++|...++++++..|++.
T Consensus 264 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 320 (327)
T 3cv0_A 264 VRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEF 320 (327)
T ss_dssp HHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHT
T ss_pred HHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhh
Confidence 999999999 899999999999999999999999999988776543
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=1.4e-29 Score=248.26 Aligned_cols=274 Identities=18% Similarity=0.191 Sum_probs=232.8
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (595)
.+...++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.+
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 35667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH---HHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC--CHHHHHHHHHH
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPAAECL---AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--YAPAYYNLGVV 200 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~---a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~ 200 (595)
+...|++++|+..|+++++..|++...+..+ +.++..+|.++...|++++|+..|+++++.+|. ++.++..+|.+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 9999999999999999999998876665443 455667799999999999999999999999999 89999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcC
Q 007634 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280 (595)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 280 (595)
+...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|+++++..|++...+..++.++ ...|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-------~~~g 295 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC-------INLG 295 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------HHHT
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH-------HHCC
Confidence 999999999999999999999999999999999999999999999999999999999876655555544 4567
Q ss_pred CHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007634 281 DINQGVAYYKKALYYNWHY------------ADAMYNLGVAYGEMLKFDMAIVFYELA 326 (595)
Q Consensus 281 ~~~~A~~~~~~~~~~~~~~------------~~~~~~la~~~~~~~~~~~A~~~~~~~ 326 (595)
++++|+..|+++++..|+. ..++..++.++...|+.+.+.....+.
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 9999999999999988773 345666666666666666655555443
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.97 E-value=3.7e-27 Score=242.63 Aligned_cols=373 Identities=12% Similarity=-0.013 Sum_probs=274.0
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 007634 71 YEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150 (595)
Q Consensus 71 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 150 (595)
|+++++.+|.+..+|..++.. ...|++++|...|+++++..|.+..+|..++..+...|++++|...|++++...| +.
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~ 79 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HI 79 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CH
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Ch
Confidence 678899999999999999984 7899999999999999999999999999999999999999999999999999999 45
Q ss_pred HHHHHHHHHHHHhHH-HHHHhCChHHHHH----HHHHHHhh---CCCCHHHHHHHHHHHHH---------cCCHHHHHHH
Q 007634 151 PAAECLAIVLTDLGT-SLKLAGNTQDGIQ----KYYEALKI---DPHYAPAYYNLGVVYSE---------LMQYDTALGC 213 (595)
Q Consensus 151 ~~~~~~a~~~~~l~~-~~~~~~~~~~A~~----~~~~~l~~---~~~~~~~~~~la~~~~~---------~g~~~~A~~~ 213 (595)
+.+ ..++. .....|++++|.+ .|++++.. +|.+..+|...+..... .|++++|..+
T Consensus 80 ~lw-------~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 152 (530)
T 2ooe_A 80 DLW-------KCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRV 152 (530)
T ss_dssp HHH-------HHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHH
T ss_pred HHH-------HHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHH
Confidence 553 33332 2234577776665 77777764 56778899888887765 7899999999
Q ss_pred HHHHHHhCCCCH--HHHHHHHHHH-------------HHcCCHHHHHHHHHH------HHhc-----CCCc-------HH
Q 007634 214 YEKAALERPMYA--EAYCNMGVIY-------------KNRGDLESAIACYER------CLAV-----SPNF-------EI 260 (595)
Q Consensus 214 ~~~al~~~~~~~--~~~~~la~~~-------------~~~~~~~~A~~~~~~------al~~-----~~~~-------~~ 260 (595)
|+++++ .|... ..|....... ...+++..|...+.. .++. .|.. ..
T Consensus 153 y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 153 YQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 999999 56542 3333322221 134567778776665 4432 3321 12
Q ss_pred HHhhHHHHHHHhhhh----------hhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHH-------HHHHHH
Q 007634 261 AKNNMAIALTDLGTK----------VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD-------MAIVFY 323 (595)
Q Consensus 261 ~~~~~~~~~~~l~~~----------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~-------~A~~~~ 323 (595)
.+.... ....+.. ......+++|+...-......-.....+..........|+++ +|+..|
T Consensus 232 ~w~~~~--~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 232 MWKKYI--QWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHH--HHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 232222 1111100 011124566655432111100001111111112223578876 999999
Q ss_pred HHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 007634 324 ELAFH-FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS-QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401 (595)
Q Consensus 324 ~~~l~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 401 (595)
+++++ ..|++..+|..+|.++...|++++|...|+++++..|.++ .+|..++.++...|++++|...|+++++..|..
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~ 389 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR 389 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc
Confidence 99997 8999999999999999999999999999999999999985 699999999999999999999999999999988
Q ss_pred HHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCcHHH
Q 007634 402 AEAYNNLGVL-YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 457 (595)
Q Consensus 402 ~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 457 (595)
...+...+.+ +...|++++|..+|+++++.+|+++.++.++.. .....|+.+.+
T Consensus 390 ~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~--~~~~~g~~~~A 444 (530)
T 2ooe_A 390 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYID--YLSHLNEDNNT 444 (530)
T ss_dssp THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHTTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHH--HHHhCCCHhhH
Confidence 7777776665 446999999999999999999999988866533 33445554443
No 28
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=3.2e-29 Score=242.94 Aligned_cols=262 Identities=15% Similarity=0.072 Sum_probs=191.5
Q ss_pred HHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHH
Q 007634 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR-LVEAAESYHKALSADPSYKPAA 153 (595)
Q Consensus 75 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~~~~~~~~ 153 (595)
+..+|++..++..+|.++...|++++|+..|+++++++|++..+|..+|.++...|+ +++|+..|++++.++|++..+
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a- 168 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV- 168 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH-
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH-
Confidence 455677778888888888888888888888888888888888888888888888886 888888888888888887766
Q ss_pred HHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007634 154 ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233 (595)
Q Consensus 154 ~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 233 (595)
|..+|.++...|++++|+..|+++++++|++..+|+.+|.++..+|++++|+.+|+++++++|.+..+|+++|.
T Consensus 169 ------~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~ 242 (382)
T 2h6f_A 169 ------WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF 242 (382)
T ss_dssp ------HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ------HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 66677777777888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHH-cCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 007634 234 IYKN-RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 312 (595)
Q Consensus 234 ~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 312 (595)
++.. .|..++|+ .+.++..|++++.++|++..+|..++.++..
T Consensus 243 ~l~~l~~~~~eA~------------------------------------~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~ 286 (382)
T 2h6f_A 243 VISNTTGYNDRAV------------------------------------LEREVQYTLEMIKLVPHNESAWNYLKGILQD 286 (382)
T ss_dssp HHHHTTCSCSHHH------------------------------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT
T ss_pred HHHHhcCcchHHH------------------------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHc
Confidence 8887 44435553 1223445555555555556666666666666
Q ss_pred cC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHH-HccCCCCHHHHHHHHHHHHh
Q 007634 313 ML--KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---------NLDKAVECYQMA-LSIKPNFSQSLNNLGVVYTV 380 (595)
Q Consensus 313 ~~--~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~---------~~~~A~~~~~~a-l~~~~~~~~~~~~la~~~~~ 380 (595)
.| ++++|+..++++ +.+|++..++..+|.++..+| .+++|+++|+++ ++++|.....|..++..+..
T Consensus 287 ~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 287 RGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp TCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 55 466666666665 666666666666666666653 246666666666 66666666666666665543
No 29
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=2.7e-29 Score=243.47 Aligned_cols=252 Identities=12% Similarity=0.045 Sum_probs=197.5
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHHh
Q 007634 185 KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD-LESAIACYERCLAVSPNFEIAKN 263 (595)
Q Consensus 185 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~ 263 (595)
..+|++..++..+|.++...|++++|+..++++++++|++..+|+.+|.++..+|+ +++|+..|++++.++|++..++.
T Consensus 91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~ 170 (382)
T 2h6f_A 91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH 170 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 34555566666666666666666667766666666666666666666666666665 67777777777766666666555
Q ss_pred hHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 007634 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 343 (595)
Q Consensus 264 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 343 (595)
.++.++.. .|++++|+..|+++++++|++..+|..+|.++...|++++|+.+|+++++++|++..+|+++|.+
T Consensus 171 ~~g~~~~~-------~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~ 243 (382)
T 2h6f_A 171 HRRVLVEW-------LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFV 243 (382)
T ss_dssp HHHHHHHH-------HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHH-------ccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 55544444 34667777777777777777888888888888888999999999999999999999999999999
Q ss_pred HHH-cCCHHHH-----HHHHHHHHccCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 007634 344 YKD-RDNLDKA-----VECYQMALSIKPNFSQSLNNLGVVYTVQG--KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (595)
Q Consensus 344 ~~~-~~~~~~A-----~~~~~~al~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (595)
+.. .|..++| +.+|++++.++|++..+|.++|.++...| ++++|++.++++ +.+|+++.++..+|.+|..+
T Consensus 244 l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 244 ISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHH
Confidence 988 5554777 58899999999999999999999999988 689999999888 88999999999999999987
Q ss_pred C--------C-HHHHHHHHHHH-HhcCCCChhhhhhHHH
Q 007634 416 G--------S-ISLAIDAYEQC-LKIDPDSRNAGQNRLL 444 (595)
Q Consensus 416 g--------~-~~~A~~~~~~a-l~~~p~~~~~~~~~~~ 444 (595)
| + +++|+++|+++ ++++|.....|..+..
T Consensus 323 ~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 323 LENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGR 361 (382)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred hcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 5 2 58999999999 9999998887776543
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.97 E-value=1.6e-28 Score=236.71 Aligned_cols=277 Identities=18% Similarity=0.193 Sum_probs=243.9
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
..+.++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++..+|.++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH------HHHHHh-HH-HHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 007634 127 KDEGRLVEAAESYHKALSADPSYKPAAECLA------IVLTDL-GT-SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a------~~~~~l-~~-~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 198 (595)
...|++++|+..+++++...|.+......+. .....+ +. ++...|++++|+..++++++..|.+..++..+|
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 9999999999999999999998876643320 001112 33 467789999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhh
Q 007634 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (595)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (595)
.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..++++++..|.+...+..++ .++..
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~-------~~~~~ 252 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA-------VSYSN 252 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH-------HHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999877655544 44555
Q ss_pred cCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 007634 279 EGDINQGVAYYKKALYYNWH------------YADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330 (595)
Q Consensus 279 ~~~~~~A~~~~~~~~~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 330 (595)
.|++++|+..+++++...|. ...++..+|.++...|++++|...++++++..
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF 316 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHH
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 67999999999999999888 67888888888888888888888887776553
No 31
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.96 E-value=4.2e-27 Score=235.76 Aligned_cols=382 Identities=15% Similarity=0.075 Sum_probs=279.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 007634 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMG---RLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (595)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (595)
..+|..+++.|++++|+.+|+++.+. .++.+++.+|.++...|+. ++|+..|+++++. ++.+++.+|.++..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 56899999999999999999999876 5788999999999999999 9999999999976 77899999997777
Q ss_pred cC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChH---HHHHHHHHHHhhCCCCHHHHHHHHHH
Q 007634 129 EG-----RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ---DGIQKYYEALKIDPHYAPAYYNLGVV 200 (595)
Q Consensus 129 ~g-----~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~---~A~~~~~~~l~~~~~~~~~~~~la~~ 200 (595)
.+ ++++|+.+|+++++..+. .+ ++.+|.++...+... ++.+.+.++.. +.++.+++.+|.+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~--~A-------~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~ 150 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG--NT-------LIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLL 150 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS--SC-------HHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH--HH-------HHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHH
Confidence 66 889999999999985443 45 556666666655544 34555555443 3457899999999
Q ss_pred HHHcCCHHHHHHH----HHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhh
Q 007634 201 YSELMQYDTALGC----YEKAALERPMYAEAYCNMGVIYKNRG---DLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273 (595)
Q Consensus 201 ~~~~g~~~~A~~~----~~~al~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~ 273 (595)
|...+.++++... ++.+...+ +.+++.+|.+|...| ++++|+.+|+++.+..+.....+..++.++...
T Consensus 151 y~~~~~~~~~~~~a~~~~~~a~~~~---~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g- 226 (452)
T 3e4b_A 151 YRTQGTYDQHLDDVERICKAALNTT---DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDA- 226 (452)
T ss_dssp HHHHTCGGGGHHHHHHHHHHHTTTC---TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCG-
T ss_pred HHcCCCcccCHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-
Confidence 9999966555554 44444434 449999999999999 999999999999999998876656666555321
Q ss_pred hhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--
Q 007634 274 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA-Y--GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD-- 348 (595)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~-~--~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~-- 348 (595)
....+++++|+.+|+++. |.++.+++.+|.+ + ...+++++|+.+|+++.+. .++.+++++|.+|. .|
T Consensus 227 --~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 227 --TLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp --GGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSS
T ss_pred --CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCC
Confidence 122379999999999998 8999999999998 5 5789999999999999865 48999999999998 55
Q ss_pred ---CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCC
Q 007634 349 ---NLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD----AGS 417 (595)
Q Consensus 349 ---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~ 417 (595)
++++|+.+|+++. +.++.+++++|.+|.. ..++++|+.+|+++.+. .++.+.++||.+|.. ..+
T Consensus 299 ~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d 373 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPD 373 (452)
T ss_dssp SCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCC
T ss_pred CCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999998 8999999999999987 44999999999999874 567899999999985 569
Q ss_pred HHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCcHHHHHHHHHHHHHH
Q 007634 418 ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRF 468 (595)
Q Consensus 418 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (595)
+.+|..+|+++.+..+. .+...+......+...+..+.....++|...-
T Consensus 374 ~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 374 PLNAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp HHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999997654 34333322333333333334444455555443
No 32
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.96 E-value=2.6e-27 Score=221.78 Aligned_cols=248 Identities=17% Similarity=0.147 Sum_probs=214.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH
Q 007634 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (595)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 270 (595)
+..++.+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++. .|.++. ..+.++.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~---~~~~~~~ 78 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATK---AKSADFE 78 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTT---CCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchh---HHHHHHH
Confidence 456778888888888888888888888888888888888888888888888888888888888 443322 1244566
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007634 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350 (595)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 350 (595)
.+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|...+..+++
T Consensus 79 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 79 YYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHH
Confidence 67777777889999999999999999999999999999999999999999999999999999999999999555556699
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhC---CC-----cHHHHHHHHHHHHHcCCHH
Q 007634 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAAN---PT-----YAEAYNNLGVLYRDAGSIS 419 (595)
Q Consensus 351 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~ 419 (595)
++|+.+|+++++.+|++..++..+|.++...|+ +++|+..++++++.. |+ ...++..+|.+|...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999 999999999999885 44 2378999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhhhhhH
Q 007634 420 LAIDAYEQCLKIDPDSRNAGQNR 442 (595)
Q Consensus 420 ~A~~~~~~al~~~p~~~~~~~~~ 442 (595)
+|+.+|+++++++|+++.++..+
T Consensus 239 ~A~~~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 239 KADAAWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCccHHHHHHHh
Confidence 99999999999999999887653
No 33
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.96 E-value=5.8e-27 Score=219.37 Aligned_cols=253 Identities=16% Similarity=0.162 Sum_probs=205.7
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH----HHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA----CAHTHC 122 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l 122 (595)
+++.++..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++ .|.++ .++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999 44443 458999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 007634 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202 (595)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 202 (595)
|.++...|++++|+..|+++++.+|.+... +..+|.++...|++++|+..++++++.+|.++.++..+|...+
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDM-------YGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHH-------HHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHH-------HHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999998776 7888888899999999999999999999999999999995555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCcHHH-HhhHHHHHHHhhhhhhh
Q 007634 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD---LESAIACYERCLAVSPNFEIA-KNNMAIALTDLGTKVKL 278 (595)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~l~~~~~~ 278 (595)
..+++++|+..++++++..|++..++..+|.++...|+ +++|+..++++++.....+.. ...+..++..+|.++..
T Consensus 154 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 56699999999999999999999999999999999999 999999999999876332211 11223344444444444
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 007634 279 EGDINQGVAYYKKALYYNWHYADAMYNLG 307 (595)
Q Consensus 279 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la 307 (595)
.|++++|+.+++++++.+|+++.++-.++
T Consensus 234 ~~~~~~A~~~~~~al~~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 234 NRDKVKADAAWKNILALDPTNKKAIDGLK 262 (272)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHhcCccHHHHHHHhh
Confidence 44444444444444444444444444433
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.5e-26 Score=214.67 Aligned_cols=226 Identities=18% Similarity=0.192 Sum_probs=139.5
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 007634 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-------AEAYC 229 (595)
Q Consensus 157 a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~ 229 (595)
+..+..+|.++...|++++|+..|+++++.+ .++.++..+|.++...|++++|+..++++++..|.. +.++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 4457777777777888888888888888777 777778888888888888888888888887776655 57777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 007634 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309 (595)
Q Consensus 230 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 309 (595)
.+|.++...|++++|+.++++++...|.. .++.. .|++++|+..+++++...|....++..+|.+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 148 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTA--------DILTK-------LRNAEKELKKAEAEAYVNPEKAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCH--------HHHHH-------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchh--------HHHHH-------HhHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 77777777777777777777777776651 11222 2345555555555555555555555555555
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007634 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389 (595)
Q Consensus 310 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 389 (595)
+...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+++++++.+|+++.++..+|.++...|++++|+.
T Consensus 149 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555544455555555555555555555
Q ss_pred HHHHHHHhC
Q 007634 390 MIEKAIAAN 398 (595)
Q Consensus 390 ~~~~al~~~ 398 (595)
+++++++++
T Consensus 229 ~~~~a~~~~ 237 (258)
T 3uq3_A 229 TLDAARTKD 237 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 555554444
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.3e-27 Score=216.36 Aligned_cols=243 Identities=18% Similarity=0.206 Sum_probs=224.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHH
Q 007634 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269 (595)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 269 (595)
.+..+..+|.++...|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..++++++..|+..........++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 36788999999999999999999999999999 88999999999999999999999999999998876532333345677
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007634 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 349 (595)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 349 (595)
..+|.++...|++++|+..+++++...|. +.++...|++++|+..+++++..+|.++.++..+|.++...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 78888888899999999999999999987 5677788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (595)
Q Consensus 350 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (595)
+++|+.+|+++++.+|.++.++..+|.++...|++++|+.+++++++.+|+++.++..+|.++...|++++|..+|++++
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC------CCChhhhhh
Q 007634 430 KID------PDSRNAGQN 441 (595)
Q Consensus 430 ~~~------p~~~~~~~~ 441 (595)
+++ |++..+...
T Consensus 235 ~~~~~~~~~p~~~~~~~~ 252 (258)
T 3uq3_A 235 TKDAEVNNGSSAREIDQL 252 (258)
T ss_dssp HHHHHHHTTTTHHHHHHH
T ss_pred HhChhhcCCCchHHHHHH
Confidence 999 777665543
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.95 E-value=5.6e-26 Score=213.35 Aligned_cols=260 Identities=8% Similarity=-0.037 Sum_probs=174.3
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHH
Q 007634 91 CLQMQNMGRLAFDSFSEAVKLDPQN-ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169 (595)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~ 169 (595)
..+..|+|++|+..++++...+|++ .+....++.+|...|++++|+..++.. +|.. ..++..++..+..
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~-------~~a~~~la~~~~~ 77 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPE-------LQAVRMFAEYLAS 77 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHH-------HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChh-------HHHHHHHHHHHcC
Confidence 4556777777777777766666665 346666777777777777777655441 2211 2235566677777
Q ss_pred hCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007634 170 AGNTQDGIQKYYEALKI--DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247 (595)
Q Consensus 170 ~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 247 (595)
.++.++|++.+++++.. +|+++.+++.+|.++...|++++|+..+++ |.+..++..+|.++..+|++++|+..
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 78888888888887765 588888888889999999999999988887 78888999999999999999999999
Q ss_pred HHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007634 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (595)
Q Consensus 248 ~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 327 (595)
++++++.+|++.... ++..+..+ +...|++++|+..|+++++..|+++.++..+|.++...|++++|+..+++++
T Consensus 153 l~~~~~~~p~~~~~~--l~~a~~~l---~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 153 LKKMQDQDEDATLTQ--LATAWVSL---AAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHHCTTCHHHH--HHHHHHHH---HHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhCcCcHHHH--HHHHHHHH---HhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999988888764222 22222111 1123556666666666666666666666666666666666666666666666
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHccCCCCHHH
Q 007634 328 HFNPHCAEACNNLGVIYKDRDNLDK-AVECYQMALSIKPNFSQS 370 (595)
Q Consensus 328 ~~~~~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~~~~~~~ 370 (595)
+.+|+++.++.++|.++...|+..+ +..+++++++++|+++.+
T Consensus 228 ~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 228 DKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence 6666666666666666666665544 345555666666665544
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.95 E-value=1.5e-26 Score=207.79 Aligned_cols=199 Identities=19% Similarity=0.165 Sum_probs=178.1
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (595)
.+++.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHc-----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHH
Q 007634 126 YKDE-----------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 194 (595)
Q Consensus 126 ~~~~-----------g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 194 (595)
+... |++++|+..|+++++.+|++..+ +..+|.++...|++++|+..|+++++++ +++.++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~-------~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 154 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPL-------HLQRGLVYALLGERDKAEASLKQALALE-DTPEIR 154 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHH-------HHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHH
Confidence 9999 99999999999999999999876 7788888899999999999999999999 999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (595)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 252 (595)
..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++-
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999998764
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.95 E-value=1.9e-26 Score=207.06 Aligned_cols=211 Identities=21% Similarity=0.174 Sum_probs=150.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 007634 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (595)
Q Consensus 188 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 267 (595)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++...+..++.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 56667777778778788888888888888877777777777777877777777777777777777777776666555555
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347 (595)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 347 (595)
++...+.. .+. .....|++++|+..|+++++.+|+++.++..+|.++...
T Consensus 82 ~~~~~~~~---~~~---------------------------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~ 131 (217)
T 2pl2_A 82 AYVALYRQ---AED---------------------------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL 131 (217)
T ss_dssp HHHHHHHT---CSS---------------------------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHhhhh---hhh---------------------------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 54443100 000 112237888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (595)
Q Consensus 348 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (595)
|++++|+..|+++++++ +++.++.++|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++
T Consensus 132 g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 132 GERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp TCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred CChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 88888888888888888 88888888888888888888888888888888888888888888888888888888888877
Q ss_pred HH
Q 007634 428 CL 429 (595)
Q Consensus 428 al 429 (595)
+-
T Consensus 211 ~~ 212 (217)
T 2pl2_A 211 EH 212 (217)
T ss_dssp --
T ss_pred Hh
Confidence 64
No 39
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.95 E-value=8.1e-26 Score=212.26 Aligned_cols=259 Identities=12% Similarity=0.018 Sum_probs=227.6
Q ss_pred HHHHhCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 007634 166 SLKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244 (595)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 244 (595)
..+..|++.+|+..+++....+|++ ......++.+|..+|++++|+..++. .+|....++..++..+...++.++|
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 3456799999999999888777776 46778899999999999999998866 2555678889999999999999999
Q ss_pred HHHHHHHHhc--CCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007634 245 IACYERCLAV--SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 322 (595)
Q Consensus 245 ~~~~~~al~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 322 (595)
++.+++++.. +|+++..+..++ .++...|++++|+..+++ |.+..++..+|.++..+|++++|+..
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la-------~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAA-------SIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHH-------HHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHH-------HHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999876 588876655544 445557899999999998 88999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 007634 323 YELAFHFNPHCAEACNNLG--VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (595)
Q Consensus 323 ~~~~l~~~~~~~~~~~~la--~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (595)
++++++.+|++.......+ .++...|++++|+.+|+++++..|+++.+++++|.++...|++++|+..|+++++.+|+
T Consensus 153 l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 153 LKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999865544433 34445689999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCChhhh
Q 007634 401 YAEAYNNLGVLYRDAGSISL-AIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~ 439 (595)
+++++.++|.++...|+..+ +..+++++++++|+++.+.
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~ 272 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK 272 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH
Confidence 99999999999999999976 5789999999999998664
No 40
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.95 E-value=5.2e-27 Score=233.49 Aligned_cols=299 Identities=22% Similarity=0.279 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh------CCCCH
Q 007634 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYA 191 (595)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~------~~~~~ 191 (595)
.+..+|.++...|++++|+..|++++...|.+... .+.++..+|.++...|++++|+..+++++.. .|...
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKT---LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHH---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 33444444444444444444444444444443221 2223444444444444444444444444433 12234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--------------------HHHHH
Q 007634 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYKNRGD--------------------LESAI 245 (595)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~--------------------~~~A~ 245 (595)
.++..+|.++...|++++|+.+++++++..|.. ..++..+|.++...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 556666777777777777777777766654432 4477778888888888 88888
Q ss_pred HHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHhcCCHHHH
Q 007634 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA------DAMYNLGVAYGEMLKFDMA 319 (595)
Q Consensus 246 ~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~A 319 (595)
.++++++.+.+... .....+.++..+|.++...|++++|+..++++++..+... .++..+|.++...|++++|
T Consensus 168 ~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 168 DFYEENLSLVTALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 88888776532221 1123456777788888888899999999999987755433 3788899999999999999
Q ss_pred HHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHhcCCHHHH
Q 007634 320 IVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAA 387 (595)
Q Consensus 320 ~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A 387 (595)
+.++++++...+.. ..++..+|.++...|++++|+.++++++++.+.. ..++..+|.++...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999998876554 6788888999999999999999999988875433 56788889999999999999
Q ss_pred HHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHH
Q 007634 388 AEMIEKAIAANP------TYAEAYNNLGVLYRDAGSISL 420 (595)
Q Consensus 388 ~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~ 420 (595)
+.++++++++.+ ....++..+|.++...|+...
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 999999888732 335678888888888887643
No 41
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.95 E-value=4.6e-27 Score=233.88 Aligned_cols=304 Identities=20% Similarity=0.209 Sum_probs=225.6
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHc------CCCc
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNV----EAHIGKGICLQMQNMGRLAFDSFSEAVKL------DPQN 115 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~ 115 (595)
.....++..|..++..|++++|+..|+++++..|.++ .++..+|.++...|++++|+..+++++.. .|..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4677889999999999999999999999999999984 68899999999999999999999999887 3445
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCC--------------------hHH
Q 007634 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN--------------------TQD 175 (595)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~--------------------~~~ 175 (595)
..++..+|.++...|++++|+..+++++...+.... ....+.++..+|.++...|+ +++
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 778999999999999999999999999988664322 23346678888888888888 888
Q ss_pred HHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHH
Q 007634 176 GIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYKNRGDLES 243 (595)
Q Consensus 176 A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~ 243 (595)
|+..+++++.. .+....++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 88888888776 23335567778888888888888888888877764432 2367777777777777777
Q ss_pred HHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007634 244 AIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 323 (595)
Q Consensus 244 A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 323 (595)
|+.++++++...+.... .... ..++..+|.++...|++++|+.++
T Consensus 246 A~~~~~~al~~~~~~~~-~~~~----------------------------------~~~~~~la~~~~~~g~~~~A~~~~ 290 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKD-RAVE----------------------------------AQSCYSLGNTYTLLQDYEKAIDYH 290 (406)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHH----------------------------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcC-chHH----------------------------------HHHHHHHHHHHHHhCcHHHHHHHH
Confidence 77777777765443211 0111 334555666666666666666666
Q ss_pred HHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC------CCHHHHHHHHHHHHhcCCHH
Q 007634 324 ELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKP------NFSQSLNNLGVVYTVQGKMD 385 (595)
Q Consensus 324 ~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~ 385 (595)
+++++..+.. ..++..+|.++...|++++|+.++++++++.+ ....++..+|.++...|+..
T Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 291 LKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 6666553322 55666777777777777777777777776632 22556777777777777653
No 42
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.94 E-value=7.8e-26 Score=225.41 Aligned_cols=285 Identities=22% Similarity=0.231 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007634 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA----CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (595)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a 157 (595)
...++.+|..+...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..+++++........
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------ 121 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND------ 121 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC------
Confidence 34455556666666666666666666666555554 34555555555555555555555555443211100
Q ss_pred HHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHH
Q 007634 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAEAYCNM 231 (595)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~l 231 (595)
.+....++..+|.++...|++++|+.+++++++. .+....++..+
T Consensus 122 -----------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 172 (411)
T 4a1s_A 122 -----------------------------RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNL 172 (411)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -----------------------------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 2334556677777777777777777777777666 34456678888
Q ss_pred HHHHHHcCC-----------------HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh
Q 007634 232 GVIYKNRGD-----------------LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294 (595)
Q Consensus 232 a~~~~~~~~-----------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 294 (595)
|.++...|+ +++|+.++++++.+.+... +
T Consensus 173 ~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~---------------------~------------- 218 (411)
T 4a1s_A 173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG---------------------D------------- 218 (411)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT---------------------C-------------
T ss_pred HHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC---------------------C-------------
Confidence 888888888 6666666666654322110 0
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-
Q 007634 295 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF- 367 (595)
Q Consensus 295 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~- 367 (595)
.+....++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+.++++++...+..
T Consensus 219 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 297 (411)
T 4a1s_A 219 -RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297 (411)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 01123456667777777777777777777777765432 2377888888888888888888888888876543
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 368 -----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 368 -----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
..++..+|.++...|++++|+.++++++...+. ...++..+|.++..+|++++|..+|++++++.+...
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 298 EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX 377 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence 668889999999999999999999999887443 256899999999999999999999999999988643
No 43
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.94 E-value=1.9e-25 Score=222.61 Aligned_cols=279 Identities=23% Similarity=0.280 Sum_probs=223.1
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHH
Q 007634 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA----PAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAE 226 (595)
Q Consensus 157 a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~~~ 226 (595)
+..+..+|..+...|++++|+..|+++++..|++. .++..+|.++...|++++|+.+++++++. .|....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 45577899999999999999999999999999986 58999999999999999999999999987 466788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCC-----------------HHHHHHHH
Q 007634 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD-----------------INQGVAYY 289 (595)
Q Consensus 227 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~ 289 (595)
++..+|.++...|++++|+.++++++...+.... ....+.++..+|.++...|+ +++|+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD-RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 9999999999999999999999999987432111 12335566667777776777 55555555
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 007634 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369 (595)
Q Consensus 290 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 369 (595)
+++++..+ .. ...+....++..+|.++...|++++|+.++++++++.+....
T Consensus 207 ~~al~~~~---------------------------~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 207 QENLKLMR---------------------------DL-GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHH---------------------------HH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHH---------------------------Hc-CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 55443211 10 011223568899999999999999999999999998765433
Q ss_pred ------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 007634 370 ------SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (595)
Q Consensus 370 ------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (595)
++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|..++++++++.++...
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 89999999999999999999999999986643 678999999999999999999999999998765432
Q ss_pred ----hhhhHHHHhhhccCCCcHHHHHHHHHH
Q 007634 438 ----AGQNRLLAMNYINEGHDDKLFEAHRDW 464 (595)
Q Consensus 438 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (595)
+.....++..+...|+.+++....++.
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 223344677888889888776655433
No 44
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.93 E-value=2.5e-25 Score=215.05 Aligned_cols=276 Identities=25% Similarity=0.298 Sum_probs=236.0
Q ss_pred HHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHH
Q 007634 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY----APAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAEAY 228 (595)
Q Consensus 159 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~ 228 (595)
.+...|..+...|++++|+..|+++++..|++ ..++..+|.++...|++++|+.+++++++. .+....++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 36778999999999999999999999999998 467889999999999999999999999876 34457789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCC--------------------HHHHHHH
Q 007634 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD--------------------INQGVAY 288 (595)
Q Consensus 229 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~A~~~ 288 (595)
..+|.++...|++++|+.+++++++..+..... ...+.++..+|.++...|+ +++|+..
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 999999999999999999999999886543221 2345667777788887888 9999999
Q ss_pred HHHHHhhC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHH
Q 007634 289 YKKALYYN------WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVEC 356 (595)
Q Consensus 289 ~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~ 356 (595)
+++++... +....++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+.+
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99988762 3335689999999999999999999999999875432 34899999999999999999999
Q ss_pred HHHHHccCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHH
Q 007634 357 YQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSISLAIDA 424 (595)
Q Consensus 357 ~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~ 424 (595)
+++++...+.. ..++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|..+
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 99999886554 6788999999999999999999999999875432 56889999999999999999999
Q ss_pred HHHHHhcCCCC
Q 007634 425 YEQCLKIDPDS 435 (595)
Q Consensus 425 ~~~al~~~p~~ 435 (595)
+++++++.++.
T Consensus 326 ~~~a~~~~~~~ 336 (338)
T 3ro2_A 326 AEKHLEISREV 336 (338)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.93 E-value=9.3e-25 Score=200.55 Aligned_cols=217 Identities=18% Similarity=0.221 Sum_probs=185.9
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 007634 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (595)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (595)
....+..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|++..++..+|
T Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 98 (243)
T 2q7f_A 19 SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAG 98 (243)
T ss_dssp -----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007634 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 203 (595)
.++...|++++|+..++++++..|.+... +..+|.++...|++++|+..++++++..|.+..++..+|.++..
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGMENGDL-------FYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCSHHH-------HHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 99999999999999999999999998765 77788888999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 007634 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (595)
Q Consensus 204 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 267 (595)
.|++++|+..++++++..|.++.++..+|.++...|++++|+.+++++++..|++...+..++.
T Consensus 172 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999876655443
No 46
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.93 E-value=2.3e-24 Score=215.96 Aligned_cols=354 Identities=18% Similarity=0.102 Sum_probs=261.8
Q ss_pred chHHHHHHHHHHHhCCCH---HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHcCCCcHHH
Q 007634 47 EGKDALSYANILRSRNKF---VDALALYEIVLEKDSGNVEAHIGKGICLQMQN-----MGRLAFDSFSEAVKLDPQNACA 118 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~ 118 (595)
+++.++.+|.++...|++ ++|+.+|+++++. ++.+++.+|.++...+ ++++|+.+|+++++. +++.+
T Consensus 34 ~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A 108 (452)
T 3e4b_A 34 YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--GEGNT 108 (452)
T ss_dssp CCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--TCSSC
T ss_pred CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCHHH
Confidence 345567788888888888 9999999999976 7789999999777766 889999999999984 45669
Q ss_pred HHHHHHHHHHcCCHHH---HHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHH----HHHHHhhCCCCH
Q 007634 119 HTHCGILYKDEGRLVE---AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK----YYEALKIDPHYA 191 (595)
Q Consensus 119 ~~~la~~~~~~g~~~~---A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~----~~~~l~~~~~~~ 191 (595)
++.+|.+|...+...+ +...+.++... .++.+ .+.+|.++...+.++++... ++.+...+ +
T Consensus 109 ~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~--g~~~a-------~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~---~ 176 (452)
T 3e4b_A 109 LIPLAMLYLQYPHSFPNVNAQQQISQWQAA--GYPEA-------GLAQVLLYRTQGTYDQHLDDVERICKAALNTT---D 176 (452)
T ss_dssp HHHHHHHHHHCGGGCTTCCHHHHHHHHHHH--TCTTH-------HHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTC---T
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHC--CCHHH-------HHHHHHHHHcCCCcccCHHHHHHHHHHHHcCC---H
Confidence 9999999998776544 44455554433 23333 67778888888855555444 44444444 4
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCcHHHHhh
Q 007634 192 PAYYNLGVVYSELM---QYDTALGCYEKAALERPMYAEAYCNMGVIYKNR----GDLESAIACYERCLAVSPNFEIAKNN 264 (595)
Q Consensus 192 ~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~ 264 (595)
.+++.+|.+|...| ++++|+.+|+++.+..+.....++.+|.+|... +++++|+.+|+++. |.++.+...
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~ 253 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS 253 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence 49999999999999 999999999999999999999999999999766 79999999999998 888888887
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhhCCCCHHHHHH
Q 007634 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML-----KFDMAIVFYELAFHFNPHCAEACNN 339 (595)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----~~~~A~~~~~~~l~~~~~~~~~~~~ 339 (595)
++.++..- ...+++++|+.+|+++.+. .++.+++.+|.+|. .| ++++|+.+|+++. +.++.++++
T Consensus 254 Lg~~~~~~----~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~ 323 (452)
T 3e4b_A 254 LAQLLYDF----PELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYY 323 (452)
T ss_dssp HHHHHHHS----GGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHH
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHH
Confidence 77764421 2378999999999999865 48999999999998 55 9999999999999 899999999
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 007634 340 LGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (595)
Q Consensus 340 la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (595)
+|.+|.. ..++++|+.+|+++.+. .++.+.+++|.+|.. ..++.+|..+|+++.+..+ ..+...++.+
T Consensus 324 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~--~~a~~~l~~l 399 (452)
T 3e4b_A 324 LGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT--PEANDLATQL 399 (452)
T ss_dssp HHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC--HHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHH
Confidence 9999987 45999999999999874 568899999999985 5699999999999988654 5566666666
Q ss_pred HHHc--CCHHHHHHHHHHHHhcCCC
Q 007634 412 YRDA--GSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 412 ~~~~--g~~~~A~~~~~~al~~~p~ 434 (595)
...+ ++..+|....++..+..+.
T Consensus 400 ~~~~~~~~~~~a~~~~~~~~~~~~~ 424 (452)
T 3e4b_A 400 EAPLTPAQRAEGQRLVQQELAARGT 424 (452)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhccc
Confidence 5443 3566777777776665443
No 47
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.93 E-value=1.2e-24 Score=210.32 Aligned_cols=284 Identities=20% Similarity=0.232 Sum_probs=209.5
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHc------CCCcH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNV----EAHIGKGICLQMQNMGRLAFDSFSEAVKL------DPQNA 116 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~ 116 (595)
....++..|..++..|++++|+..|+++++..|+++ .++..+|.++...|++++|+..++++++. .|...
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 356788999999999999999999999999999984 68889999999999999999999999887 44557
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCC--------------------hHHH
Q 007634 117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN--------------------TQDG 176 (595)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~--------------------~~~A 176 (595)
.++..+|.++...|++++|+..++++++..+..... ...+.++..+|.++...|+ +++|
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 789999999999999999999999999876643321 2345668888888888888 8888
Q ss_pred HHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHH
Q 007634 177 IQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYKNRGDLESA 244 (595)
Q Consensus 177 ~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A 244 (595)
+..+++++.. .+....++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888887765 22234567777888888888888888887777654332 23667777777777777777
Q ss_pred HHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007634 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 324 (595)
Q Consensus 245 ~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 324 (595)
+.++++++...+.... .... ..++..+|.++...|++++|+.+++
T Consensus 243 ~~~~~~al~~~~~~~~-~~~~----------------------------------~~~~~~la~~~~~~g~~~~A~~~~~ 287 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKD-RAVE----------------------------------AQSCYSLGNTYTLLQDYEKAIDYHL 287 (338)
T ss_dssp HHHHHHHHHHHHHTTC-HHHH----------------------------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcc-hhHH----------------------------------HHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 7777777655433211 0111 3455566666666666666666666
Q ss_pred HHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 007634 325 LAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (595)
Q Consensus 325 ~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 366 (595)
+++...+.. ..++..+|.++...|++++|..++++++++.+.
T Consensus 288 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 288 KHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 666553321 446667777777777777777777777776554
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.92 E-value=2.5e-23 Score=192.12 Aligned_cols=208 Identities=15% Similarity=0.102 Sum_probs=198.1
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (595)
+..++.+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007634 128 DEGRLVEAAESYHKALS--ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (595)
Q Consensus 128 ~~g~~~~A~~~~~~~l~--~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g 205 (595)
..|++++|+.++++++. ..|.+... +..+|.++...|++++|+..++++++..|.+..++..+|.++...|
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRV-------FENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 189 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence 99999999999999999 55654443 7788889999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 007634 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (595)
Q Consensus 206 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 262 (595)
++++|+..++++++..|.+...+..++.++...|++++|..+++++++..|+++...
T Consensus 190 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999987654
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.92 E-value=7.1e-24 Score=194.61 Aligned_cols=213 Identities=22% Similarity=0.275 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHH
Q 007634 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271 (595)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 271 (595)
..++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.+...+..++.+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~--- 100 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV--- 100 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH---
Confidence 44445555555555555555555555555555555555555555555555555555555554444332222111111
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 007634 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 351 (595)
Q Consensus 272 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~ 351 (595)
+...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|+++
T Consensus 101 ----~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 101 ----YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp ----HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred ----HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 1112233333333333333333333444444444444444555555554444444444444444444444444444
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 007634 352 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (595)
Q Consensus 352 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (595)
+|+..++++++..|++..++..+|.++...|++++|+.+++++++.+|++..++..++.+
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444444444433
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.92 E-value=7.6e-24 Score=185.28 Aligned_cols=172 Identities=24% Similarity=0.383 Sum_probs=166.6
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 007634 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345 (595)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 345 (595)
+.+|..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|+.+.++..+|.++.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 45677888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425 (595)
Q Consensus 346 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 425 (595)
..++++.|...+.+++...|.+..++..+|.++..+|++++|+..|+++++.+|+++.++.++|.+|..+|++++|+.+|
T Consensus 85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 164 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCChh
Q 007634 426 EQCLKIDPDSRN 437 (595)
Q Consensus 426 ~~al~~~p~~~~ 437 (595)
+++++++|+++.
T Consensus 165 ~~al~~~p~~a~ 176 (184)
T 3vtx_A 165 KKALEKEEKKAK 176 (184)
T ss_dssp HHHHHTTHHHHH
T ss_pred HHHHhCCccCHH
Confidence 999999998653
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.92 E-value=1.5e-22 Score=189.28 Aligned_cols=232 Identities=22% Similarity=0.324 Sum_probs=199.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHH
Q 007634 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEIAK 262 (595)
Q Consensus 187 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~ 262 (595)
+|.++.+++.+|.++...|++++|+.+|+++++ |+++.+++.+|.++.. .+++++|+.+|+++++.. ++.
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~-- 75 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSN-- 75 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH--
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHH--
Confidence 466788888888888888888888888888887 6778888888888888 888888888888888774 333
Q ss_pred hhHHHHHHHhhhhhhh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCH
Q 007634 263 NNMAIALTDLGTKVKL----EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHCA 334 (595)
Q Consensus 263 ~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~ 334 (595)
++..+|.++.. .+++++|+..|+++++. +++.++..+|.++.. .+++++|+.+|+++++.. ++
T Consensus 76 -----a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~ 146 (273)
T 1ouv_A 76 -----GCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DG 146 (273)
T ss_dssp -----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred -----HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cH
Confidence 34445555555 78888999999888877 378899999999999 999999999999999876 68
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCcHHHHH
Q 007634 335 EACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYN 406 (595)
Q Consensus 335 ~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 406 (595)
.++..+|.++.. .+++++|+.+|+++++. .++.++..+|.+|.. .+++++|+.+|+++++..| +.+++
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~ 222 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCF 222 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHH
Confidence 899999999999 99999999999999987 467899999999999 9999999999999999866 88999
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhcCCCChh
Q 007634 407 NLGVLYRD----AGSISLAIDAYEQCLKIDPDSRN 437 (595)
Q Consensus 407 ~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~ 437 (595)
.+|.+|.. .+++++|+.+|++++++.|++..
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999 99999999999999999987543
No 52
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.92 E-value=4.9e-24 Score=209.98 Aligned_cols=242 Identities=13% Similarity=0.129 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH
Q 007634 193 AYYNLGVVYSELMQYDTALGCYEKAALE---RPM---YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (595)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 266 (595)
.++.+|.++...|++++|+..++++++. .++ .+.++..+|.++...|++++|+.++++++++.+.........+
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 4556999999999999999999999987 232 4688999999999999999999999999998776654344567
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hC-CCCH
Q 007634 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFYELAFH-----FN-PHCA 334 (595)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~-----~~-~~~~ 334 (595)
.++..+|.++...|++++|+..++++++..+.. ..++.++|.++...|++++|+.+++++++ .+ |..+
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 889999999999999999999999999875443 35899999999999999999999999999 45 7778
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccC-----CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCcHHHHH
Q 007634 335 EACNNLGVIYKDRDNLDKAVECYQMALSIK-----PNFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAANPTYAEAYN 406 (595)
Q Consensus 335 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~ 406 (595)
.++..+|.++...|++++|+.++++++++. |.....+..+|.++...|+ +++|+..+++. ...|....++.
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~ 343 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHH
Confidence 999999999999999999999999999884 3334446789999999999 88888888776 33444567899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007634 407 NLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (595)
Q Consensus 407 ~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (595)
.+|.+|...|++++|..+|++++++...-
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999876543
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.92 E-value=4.2e-23 Score=193.36 Aligned_cols=252 Identities=14% Similarity=0.073 Sum_probs=164.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (595)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (595)
.....|++++|+..|+++++..+.+... .+.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDE---RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred ccCccchHHHHHHHHHHHHhcccccCch---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Confidence 3445678888999999988876543322 3456888889999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHH
Q 007634 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (595)
Q Consensus 205 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (595)
|++++|+.+++++++.+|.++.++..+|.++...|++++|+..++++++..|++.......... ...|++++
T Consensus 91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~~~~~ 162 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA--------EQKLDEKQ 162 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH--------HHHHCHHH
T ss_pred cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH--------HHhcCHHH
Confidence 9999999999999999999899999999999999999999999999998888876433222111 22345666
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH----CAEACNNLGVIYKDRDNLDKAVECYQMA 360 (595)
Q Consensus 285 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~a 360 (595)
|+..+++++...|.+...+. ++.++...++.++|+..+++++...|. ++.++..+|.++...|++++|+.+|+++
T Consensus 163 A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 163 AKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666555555433322 444444455555555555555444332 1344444444444444444444444444
Q ss_pred HccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007634 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 391 (595)
Q Consensus 361 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 391 (595)
++.+|++... .+.++...|++++|++.+
T Consensus 242 l~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 242 VANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 4444433221 133344444444444433
No 54
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.92 E-value=4.6e-23 Score=180.27 Aligned_cols=173 Identities=25% Similarity=0.361 Sum_probs=131.9
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007634 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159 (595)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~ 159 (595)
+++.+|+.+|.++..+|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|++...
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------- 75 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEA------- 75 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH-------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHH-------
Confidence 4566777777777777777777777777777777777777777777777777777777777777777776655
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 007634 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (595)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 239 (595)
+..+|.++...++++.|...+.+++..+|.+..++..+|.++...|++++|+..|+++++.+|.++.++..+|.++..+|
T Consensus 76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g 155 (184)
T 3vtx_A 76 YYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG 155 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCC
Confidence 55566666677777777777777777777777777788888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhcCCCcH
Q 007634 240 DLESAIACYERCLAVSPNFE 259 (595)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~ 259 (595)
++++|+..|+++++++|+++
T Consensus 156 ~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 156 LRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp CHHHHHHHHHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHhCCccCH
Confidence 88888888888887777643
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.92 E-value=5.8e-22 Score=185.32 Aligned_cols=181 Identities=23% Similarity=0.333 Sum_probs=97.3
Q ss_pred hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCH
Q 007634 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDL 241 (595)
Q Consensus 170 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~ 241 (595)
.+++++|+.+|+++++.+ ++.+++.+|.++.. .+++++|+.+|+++++.. ++.++..+|.++.. .+++
T Consensus 55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~ 130 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDF 130 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCH
T ss_pred CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCH
Confidence 444444444444444432 34455555555555 555555555555555442 45555555555555 5555
Q ss_pred HHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHH
Q 007634 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFD 317 (595)
Q Consensus 242 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~ 317 (595)
++|+.+|+++++.. +..++..+|.++.. .++++
T Consensus 131 ~~A~~~~~~a~~~~-------------------------------------------~~~a~~~lg~~~~~~~~~~~~~~ 167 (273)
T 1ouv_A 131 KKAVEYFTKACDLN-------------------------------------------DGDGCTILGSLYDAGRGTPKDLK 167 (273)
T ss_dssp HHHHHHHHHHHHTT-------------------------------------------CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHhcC-------------------------------------------cHHHHHHHHHHHHcCCCCCCCHH
Confidence 55555555544432 23334444444444 55555
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 007634 318 MAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAE 389 (595)
Q Consensus 318 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~ 389 (595)
+|+.+|+++++. .++.++..+|.++.. .+++++|+.+|+++++..| +.++..+|.+|.. .+++++|+.
T Consensus 168 ~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~ 243 (273)
T 1ouv_A 168 KALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIE 243 (273)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHH
T ss_pred HHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHH
Confidence 555555555544 234555666666666 6666666666666666543 5566666666666 666666666
Q ss_pred HHHHHHHhCCCc
Q 007634 390 MIEKAIAANPTY 401 (595)
Q Consensus 390 ~~~~al~~~p~~ 401 (595)
+|+++++..|++
T Consensus 244 ~~~~a~~~~~~~ 255 (273)
T 1ouv_A 244 NFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHHTCHH
T ss_pred HHHHHHHcCCHH
Confidence 666666666543
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.92 E-value=1.3e-23 Score=196.81 Aligned_cols=247 Identities=17% Similarity=0.151 Sum_probs=207.1
Q ss_pred HHHhCChHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 007634 167 LKLAGNTQDGIQKYYEALKID----PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242 (595)
Q Consensus 167 ~~~~~~~~~A~~~~~~~l~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 242 (595)
....|++++|+..++++++.. |.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 344588999999999999974 4567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007634 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 322 (595)
Q Consensus 243 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 322 (595)
+|+.+|+++++..|.+...+..++.+ +...|++++|+..++++++..|++......++.. ...|++++|+..
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~-------~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~ 166 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIA-------LYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEV 166 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHH-------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHH-------HHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHH
Confidence 99999999999999887655555444 4446799999999999999999988766666544 666999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 007634 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (595)
Q Consensus 323 ~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 398 (595)
+++++...|.+...+. ++.++...++.++|+..+++++...|.. ..++..+|.++...|++++|+.+|+++++.+
T Consensus 167 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 167 LKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 9999998888766654 7777788888899999999998887643 6788999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 399 PTYAEAYNNLGVLYRDAGSISLAIDAY 425 (595)
Q Consensus 399 p~~~~~~~~la~~~~~~g~~~~A~~~~ 425 (595)
|++... .+.++..+|++++|++.+
T Consensus 246 p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 VHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CTTCHH---HHHHHHHHHHHHHC----
T ss_pred chhHHH---HHHHHHHHHHHHhhHHHH
Confidence 876443 377888889999988877
No 57
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.92 E-value=9.4e-23 Score=188.28 Aligned_cols=208 Identities=18% Similarity=0.116 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH
Q 007634 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (595)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 270 (595)
+.+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-------------- 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-------------- 102 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--------------
Confidence 555666666666666666666666666666666666666666666666666666666666555544
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcC
Q 007634 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH--FNPHCAEACNNLGVIYKDRD 348 (595)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~~ 348 (595)
.+..++..+|.++...|++++|+.++++++. ..|.+..++..+|.++...|
T Consensus 103 ---------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 155 (252)
T 2ho1_A 103 ---------------------------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMK 155 (252)
T ss_dssp ---------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTT
T ss_pred ---------------------------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcC
Confidence 4455666667777777777777777777777 66667777777777777777
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (595)
Q Consensus 349 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (595)
++++|+.+++++++..|.+..++..+|.++...|++++|+..++++++..|.+..++..++.++...|++++|..+++++
T Consensus 156 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 156 KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777777777777777777778888888888888888888887777777777778888888888888888888888
Q ss_pred HhcCCCChhhh
Q 007634 429 LKIDPDSRNAG 439 (595)
Q Consensus 429 l~~~p~~~~~~ 439 (595)
++++|+++.+.
T Consensus 236 ~~~~p~~~~~~ 246 (252)
T 2ho1_A 236 KRLYPGSLEYQ 246 (252)
T ss_dssp HHHCTTSHHHH
T ss_pred HHHCCCCHHHH
Confidence 88887776553
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.91 E-value=2.6e-22 Score=181.73 Aligned_cols=212 Identities=16% Similarity=0.112 Sum_probs=153.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH
Q 007634 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (595)
Q Consensus 187 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 266 (595)
.|.++.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-------------- 69 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQAL-------------- 69 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHH--------------
Confidence 344455555555555555555555555555555555555555555555555555555555555544
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh--hCCCCHHHHHHHHHH
Q 007634 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM-LKFDMAIVFYELAFH--FNPHCAEACNNLGVI 343 (595)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~l~--~~~~~~~~~~~la~~ 343 (595)
...|.+..++..+|.++... |++++|+..++++++ ..|....++..+|.+
T Consensus 70 ---------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 122 (225)
T 2vq2_A 70 ---------------------------SIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGIC 122 (225)
T ss_dssp ---------------------------HHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHH
T ss_pred ---------------------------HhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHH
Confidence 44555556666777777777 788888888888777 556667788888888
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHH
Q 007634 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP-TYAEAYNNLGVLYRDAGSISLAI 422 (595)
Q Consensus 344 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~ 422 (595)
+...|++++|+.+++++++..|.+..++..+|.++...|++++|+..++++++..| .+...+..++.++...|+.++|.
T Consensus 123 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 202 (225)
T 2vq2_A 123 SAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAY 202 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888 88888888888888888888888
Q ss_pred HHHHHHHhcCCCChhhh
Q 007634 423 DAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 423 ~~~~~al~~~p~~~~~~ 439 (595)
.+++.+.+.+|+++.+.
T Consensus 203 ~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 203 EYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHhCCCCHHHH
Confidence 88888888888877654
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.91 E-value=1.5e-22 Score=192.50 Aligned_cols=230 Identities=10% Similarity=0.038 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCCh-------HHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHc
Q 007634 133 VEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT-------QDGIQKYYEALK-IDPHYAPAYYNLGVVYSEL 204 (595)
Q Consensus 133 ~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~-------~~A~~~~~~~l~-~~~~~~~~~~~la~~~~~~ 204 (595)
++|+..|++++..+|.++..+..++..+...+..+...|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 56777777777777777777665555554444334456775 899999999999 6999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHH
Q 007634 205 MQYDTALGCYEKAALERPMYAE-AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 283 (595)
Q Consensus 205 g~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 283 (595)
|++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|.....+...+.... ...|+++
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~------~~~~~~~ 186 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY------YCSKDKS 186 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHH------HTSCCHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH------HHcCCHH
Confidence 9999999999999999999886 89999999999999999999999999998876544432221111 1246777
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF---NP-HCAEACNNLGVIYKDRDNLDKAVECYQM 359 (595)
Q Consensus 284 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~---~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~ 359 (595)
+|...|+++++.+|+++.++..++.++...|++++|+..|++++.. .| ....+|..++..+...|++++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777774 33 2566677777777777777777777777
Q ss_pred HHccCCCCH
Q 007634 360 ALSIKPNFS 368 (595)
Q Consensus 360 al~~~~~~~ 368 (595)
+++..|++.
T Consensus 267 a~~~~p~~~ 275 (308)
T 2ond_A 267 RFTAFREEY 275 (308)
T ss_dssp HHHHTTTTT
T ss_pred HHHHccccc
Confidence 777777644
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.91 E-value=2.6e-23 Score=209.62 Aligned_cols=230 Identities=20% Similarity=0.228 Sum_probs=157.0
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY-DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249 (595)
Q Consensus 171 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 249 (595)
+.+++++..+.+.....|..+.+++.+|.++...|++ ++|+.+|+++++.+|+++.++..+|.++...|++++|+.+|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4577888889999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcHHHHhhHHHHHHHh--hhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007634 250 RCLAVSPNFEIAKNNMAIALTDL--GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (595)
Q Consensus 250 ~al~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 327 (595)
++++++|+ ...+..++.++..+ +......|++++|+..|+++++.+|++..++..+|.++...
T Consensus 162 ~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-------------- 226 (474)
T 4abn_A 162 GALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSL-------------- 226 (474)
T ss_dssp HHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--------------
Confidence 99999998 45555555544443 11111114555555555555555555555555555555444
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHH
Q 007634 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 404 (595)
Q Consensus 328 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 404 (595)
++..+. ..|++++|+.+|+++++++| +++.++.++|.++...|++++|+..|+++++++|++..+
T Consensus 227 ---------~~~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a 294 (474)
T 4abn_A 227 ---------YFNTGQ---NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEP 294 (474)
T ss_dssp ---------HHHTTC---CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ---------HHhhcc---ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 000000 00555555555555555555 555555556666656666666666666666666666666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 007634 405 YNNLGVLYRDAGSISLAIDAYEQ 427 (595)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~ 427 (595)
+..++.++..+|++++|+..+.+
T Consensus 295 ~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 295 QQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 66666666666666666555443
No 61
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.91 E-value=5.9e-22 Score=179.33 Aligned_cols=211 Identities=19% Similarity=0.125 Sum_probs=198.2
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (595)
..+..++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++..+|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHc-CCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 007634 126 YKDE-GRLVEAAESYHKALS--ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202 (595)
Q Consensus 126 ~~~~-g~~~~A~~~~~~~l~--~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 202 (595)
+... |++++|+..++++++ ..|.... ++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 158 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYI-------ANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKM 158 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 9999 999999999999999 3444333 47888999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHh
Q 007634 203 ELMQYDTALGCYEKAALERP-MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263 (595)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 263 (595)
..|++++|+..++++++..| .+...+..++.++...|+.++|..+++.+.+..|+++....
T Consensus 159 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 159 LAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999999999 99999999999999999999999999999999999876543
No 62
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.91 E-value=1.5e-22 Score=183.79 Aligned_cols=217 Identities=19% Similarity=0.183 Sum_probs=196.2
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDS-GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (595)
.+++.++..|..++..|+|++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4568999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHH
Q 007634 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--YAPAYYNLGVVYS 202 (595)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~ 202 (595)
++...|++++|+..|+++++..|++......++.++..+|.++...|++++|+..|+++++.+|+ ++.++..+|.++.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 99999999999999999999999999888888899999999999999999999999999999999 9999999999997
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHH
Q 007634 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269 (595)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 269 (595)
..| ...++++..+.+.....+ .+......+.+++|+.+++++++++|++......++.+.
T Consensus 165 ~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 165 NNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 665 445667777766664443 344456677899999999999999999998877776654
No 63
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.91 E-value=8.2e-21 Score=201.20 Aligned_cols=336 Identities=12% Similarity=0.065 Sum_probs=260.5
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHH
Q 007634 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSG----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120 (595)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (595)
..+++..-..+..|...|.+.+|+++|++++- .|. +...-..++.+..+. +..+..++..+.-..+ .-
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl-~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVL-DNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------AP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHc-CCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HH
Confidence 35666777778888899999999999999994 444 333333355444444 3344444444332111 23
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 007634 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200 (595)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 200 (595)
.+|.++...|.+++|..+|+++- ....+ +...+...+++++|+++++++ +.+.+|+.+|.+
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~----~~~~A----------~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKA 1114 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD----VNTSA----------VQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKA 1114 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC----CHHHH----------HHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHH
Confidence 48999999999999999999973 11111 222233678999999999866 569999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcC
Q 007634 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280 (595)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 280 (595)
+...|++++|+..|.++ +++..+..+|.++.+.|++++|+++|..+.+..++.. ... .+|..|.+.+
T Consensus 1115 ql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~-Idt-------~LafaYAKl~ 1181 (1630)
T 1xi4_A 1115 QLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY-VET-------ELIFALAKTN 1181 (1630)
T ss_pred HHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc-ccH-------HHHHHHHhhc
Confidence 99999999999999886 7899999999999999999999999999998875532 111 2445555566
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360 (595)
Q Consensus 281 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 360 (595)
++++ ++.|. ...+...+..+|..+...|+|++|..+|.++ ..|..+|.++.++|++++|++.++++
T Consensus 1182 rlee-le~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1182 RLAE-LEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred CHHH-HHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 7775 43332 2334566778999999999999999999996 58999999999999999999999998
Q ss_pred HccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhh
Q 007634 361 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (595)
Q Consensus 361 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 440 (595)
.+..+|...+.++...|++..|..+... +..+ ++.+..++..|...|.+++|+.++++++.++|.+...+.
T Consensus 1248 -----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmft 1318 (1630)
T 1xi4_A 1248 -----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFT 1318 (1630)
T ss_pred -----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHH
Confidence 4568999999999999999999998774 4444 456668999999999999999999999999988877766
Q ss_pred hHH
Q 007634 441 NRL 443 (595)
Q Consensus 441 ~~~ 443 (595)
.+.
T Consensus 1319 ELa 1321 (1630)
T 1xi4_A 1319 ELA 1321 (1630)
T ss_pred HHH
Confidence 543
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.91 E-value=5.4e-23 Score=207.29 Aligned_cols=201 Identities=16% Similarity=0.160 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHH
Q 007634 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL-ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285 (595)
Q Consensus 207 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 285 (595)
+++++..+++.....|.++.+++.+|.++...|++ ++|+.+|+++++.+|
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p----------------------------- 134 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP----------------------------- 134 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-----------------------------
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-----------------------------
Confidence 45566666666666666666777777776666666 666666666665555
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------CCHHHHHHH
Q 007634 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR---------DNLDKAVEC 356 (595)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~ 356 (595)
++..++..+|.++...|++++|+.+|+++++.+|+ ..++..+|.++... |++++|+.+
T Consensus 135 ------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~ 201 (474)
T 4abn_A 135 ------------ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ 201 (474)
T ss_dssp ------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHH
T ss_pred ------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHH
Confidence 45566777788888888888888888888888888 68888888888888 999999999
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 357 YQMALSIKPNFSQSLNNLGVVYTVQ--------GKMDAAAEMIEKAIAANP---TYAEAYNNLGVLYRDAGSISLAIDAY 425 (595)
Q Consensus 357 ~~~al~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~ 425 (595)
|+++++++|++..++..+|.++... |++++|+..|+++++++| +++.+++++|.+|..+|++++|+..|
T Consensus 202 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 281 (474)
T 4abn_A 202 AKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGF 281 (474)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999 999999999999999999 99999999999999999999999999
Q ss_pred HHHHhcCCCChhhhhhHHHHhhhc
Q 007634 426 EQCLKIDPDSRNAGQNRLLAMNYI 449 (595)
Q Consensus 426 ~~al~~~p~~~~~~~~~~~~~~~~ 449 (595)
+++++++|++..++.++..++..+
T Consensus 282 ~~al~l~p~~~~a~~~l~~~~~~l 305 (474)
T 4abn_A 282 SQAAALDPAWPEPQQREQQLLEFL 305 (474)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999998887765544443
No 65
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.91 E-value=2.1e-24 Score=213.05 Aligned_cols=147 Identities=9% Similarity=0.055 Sum_probs=111.7
Q ss_pred hhHHHHhhhccCCCcHHHHHHHHHHHHHHH-h--hccccCCCCCCCCCCCCeEEEEecCCcccchHHHhhhhhhcccCCC
Q 007634 440 QNRLLAMNYINEGHDDKLFEAHRDWGKRFM-R--LYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQ 516 (595)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~igy~s~d~~~h~~~~~~~~~~~~~d~~ 516 (595)
.+.++-++|....+.-+.-+...++-++.. . .....+....++.++++++|||+|.+|++|||++++.+++.+ ||+
T Consensus 225 ~~~ym~csy~~~~~kh~iK~~~n~~~~~~l~~~~g~~~~~~~~~~~~~~K~l~ig~ls~f~~~HsV~r~~~~~l~~-dR~ 303 (631)
T 3q3e_A 225 HDVYMHCSYDTSVNKHDVKRALNHVIRRHIESEYGWKDRDVAHIGYRNNKPVMVVLLEHFHSAHSIYRTHSTSMIA-ARE 303 (631)
T ss_dssp HHHHHHGGGSCSTTTTHHHHHHHHHHHHHHHHHSCCCCCCCSSCCEETTEEEEEEECSSCCTTSHHHHHHHHHHHH-HTT
T ss_pred cceeeeccCCCCchhHHHHHHHHHHHHHhhHhhcCCcccccCCCCCCCCCeEEEEEeCcccCCCcHHHHHHHHHHh-hhh
Confidence 344555667655554444444444444422 1 111111123334568899999999999999999999999987 999
Q ss_pred ceEEEEeeCCccCChhhHHHHHHhhhcCCceeeCCCCC----HHHHHHHHHhCCCcEEEeCCCCCCCChhhhhhcCCCCc
Q 007634 517 NYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGID----EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPV 592 (595)
Q Consensus 517 ~fe~~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~APv 592 (595)
+|||+||+ ++..|+.| |+. +|+|+++.+++ ++++|++|++|+|||||||+|||.+.++.++++|||||
T Consensus 304 ~FEV~~Ys-~~~~D~~t---r~~----~d~f~~l~~~s~~~~~~~ia~~Ir~d~IDILVdL~g~t~~~~i~~aa~RpAPV 375 (631)
T 3q3e_A 304 HFYLIGLG-SPSVDQAG---QEV----FDEFHLVAGDNMKQKLEFIRSVCESNGAAIFYMPSIGMDMTTIFASNTRLAPI 375 (631)
T ss_dssp TSEEEEEE-CTTSCHHH---HTT----SSEEEECCCSSHHHHHHHHHHHHHHHTCSEEEESCCSSSHHHHHHTTSCCSSE
T ss_pred cEEEEEEe-CCCCCHHH---Hhc----CcEEEECCCCCccccHHHHHHHHHhcCCCEEEECCCCCCchhHHHHhCCCchh
Confidence 99999999 77778887 333 48999999998 88999999999999999999999777777777999999
Q ss_pred ccC
Q 007634 593 QVC 595 (595)
Q Consensus 593 q~~ 595 (595)
|||
T Consensus 376 Qvs 378 (631)
T 3q3e_A 376 QAI 378 (631)
T ss_dssp EEE
T ss_pred eEe
Confidence 996
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.91 E-value=1.5e-22 Score=199.42 Aligned_cols=323 Identities=12% Similarity=0.056 Sum_probs=190.1
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CCHHHHHHHH----HHHHHhCCHHHHH-----------HHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDS---GNVEAHIGKG----ICLQMQNMGRLAF-----------DSFSE 107 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la----~~~~~~g~~~~A~-----------~~~~~ 107 (595)
..+...+.....+...+++++|..+++++.+.-+ .+...+.... ......++++.+. +.+++
T Consensus 10 ~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 89 (383)
T 3ulq_A 10 SSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLE 89 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHH
Confidence 3567778888888999999999999998866422 3444332221 2222233333333 44443
Q ss_pred HHHcCCCcHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHH
Q 007634 108 AVKLDPQNAC------AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYY 181 (595)
Q Consensus 108 al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~ 181 (595)
+-. .|.... .++.+|.++...|++++|+..|++++.......+ ....+.++..+|.++...|++++|+.+++
T Consensus 90 i~~-~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ 167 (383)
T 3ulq_A 90 IDK-KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKD-RIEKAEFFFKMSESYYYMKQTYFSMDYAR 167 (383)
T ss_dssp HHH-HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHh-cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 322 222222 2333666666666666666666666655222111 11123445555555555555555555555
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 007634 182 EALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (595)
Q Consensus 182 ~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 261 (595)
++++..+.... ..+....++..+|.++...|++++|+.++++++++.+....
T Consensus 168 ~al~~~~~~~~---------------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~- 219 (383)
T 3ulq_A 168 QAYEIYKEHEA---------------------------YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ- 219 (383)
T ss_dssp HHHHHHHTCST---------------------------THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHhCcc---------------------------chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC-
Confidence 55544222110 00111234455555555555555555555555544332211
Q ss_pred HhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh-----hC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----
Q 007634 262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALY-----YN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN----- 330 (595)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~----- 330 (595)
....+.++..+|.++...|++++|+.+++++++ .+ |....++..+|.++...|++++|+.++++++++.
T Consensus 220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 299 (383)
T 3ulq_A 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD 299 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 112344455555555555566666666666655 34 5567778888888888888888888888888763
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 007634 331 PHCAEACNNLGVIYKDRDN---LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399 (595)
Q Consensus 331 ~~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 399 (595)
|.....+..+|.++...|+ +++|+..+++. ...|....++..+|.+|...|++++|..++++++++..
T Consensus 300 ~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 300 VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3333445678888888888 78888888776 33445566888899999999999999999999987643
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=2.1e-21 Score=184.64 Aligned_cols=224 Identities=8% Similarity=0.064 Sum_probs=199.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHh-cCCCcHHHHhhHHHHHHHh
Q 007634 208 DTALGCYEKAALERPMYAEAYCNMGVIYK-------NRGDL-------ESAIACYERCLA-VSPNFEIAKNNMAIALTDL 272 (595)
Q Consensus 208 ~~A~~~~~~al~~~~~~~~~~~~la~~~~-------~~~~~-------~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~l 272 (595)
++|+..|++++..+|.++.+|+.+|.++. ..|++ ++|+..|++++. +.|++...+..++.++..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~- 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES- 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh-
Confidence 67888888888888888888888888876 35876 899999999999 699887766665555544
Q ss_pred hhhhhhcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCH
Q 007634 273 GTKVKLEGDINQGVAYYKKALYYNWHYAD-AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RDNL 350 (595)
Q Consensus 273 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~~~~ 350 (595)
.|++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|....++...+.+... .|++
T Consensus 112 ------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 112 ------RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp ------TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCH
T ss_pred ------cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCH
Confidence 67999999999999999999887 999999999999999999999999999999998888877776544 7999
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CC-CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA---NP-TYAEAYNNLGVLYRDAGSISLAIDAYE 426 (595)
Q Consensus 351 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p-~~~~~~~~la~~~~~~g~~~~A~~~~~ 426 (595)
++|+.+|+++++.+|+++.+|..+|.++...|++++|...|++++.. .| +...+|..++..+...|+.++|...++
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999995 55 368899999999999999999999999
Q ss_pred HHHhcCCCChhh
Q 007634 427 QCLKIDPDSRNA 438 (595)
Q Consensus 427 ~al~~~p~~~~~ 438 (595)
++++..|++...
T Consensus 266 ~a~~~~p~~~~~ 277 (308)
T 2ond_A 266 RRFTAFREEYEG 277 (308)
T ss_dssp HHHHHTTTTTSS
T ss_pred HHHHHccccccc
Confidence 999999987644
No 68
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.90 E-value=2.8e-21 Score=175.33 Aligned_cols=154 Identities=25% Similarity=0.313 Sum_probs=130.4
Q ss_pred HHHHhHHHHHHhCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 007634 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (595)
Q Consensus 159 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 237 (595)
.+..+|.++...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..++++++.+|++..++..+|.++..
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 88 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD 88 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 388899999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHh
Q 007634 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH--YADAMYNLGVAYGE 312 (595)
Q Consensus 238 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~ 312 (595)
.|++++|+..++++++..|+++.....++.++..+|.++...|++++|+..|+++++.+|+ ++.++..+|.++..
T Consensus 89 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 89 MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 9999999999999999999998777666666666666665566666666666666655555 55555555555543
No 69
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.90 E-value=2.5e-20 Score=197.55 Aligned_cols=320 Identities=16% Similarity=0.154 Sum_probs=258.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHH
Q 007634 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLV 133 (595)
Q Consensus 54 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 133 (595)
.|..+...|.|++|..+|+++- .+.. .+...+...+++++|.++++++ +.+.+|+.+|.++...|+++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~----~~~~---A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD----VNTS---AVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC----CHHH---HHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHH
Confidence 4899999999999999999972 1111 1233344888999999998865 66889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007634 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGC 213 (595)
Q Consensus 134 ~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 213 (595)
+|+..|.++ ++... +...|.++...|++++|+++|..+.+..++ +.+...+|.+|.+++++++ ++.
T Consensus 1123 EAIdsYiKA-----dD~sa-------y~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~ 1188 (1630)
T 1xi4_A 1123 EAIDSYIKA-----DDPSS-------YMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEE 1188 (1630)
T ss_pred HHHHHHHhc-----CChHH-------HHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHH
Confidence 999999886 45554 777888889999999999999999988744 3334458999999999885 444
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHH
Q 007634 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293 (595)
Q Consensus 214 ~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 293 (595)
|. ..+ +...+..+|..+...|++++|..+|.++ ..|..++.++...|++++|++.++++
T Consensus 1189 fI----~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------------~ny~rLA~tLvkLge~q~AIEaarKA- 1247 (1630)
T 1xi4_A 1189 FI----NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------------SNFGRLASTLVHLGEYQAAVDGARKA- 1247 (1630)
T ss_pred HH----hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------------hHHHHHHHHHHHhCCHHHHHHHHHHh-
Confidence 42 233 4466778999999999999999999985 13555666666678999999999998
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH
Q 007634 294 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 373 (595)
Q Consensus 294 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 373 (595)
.+..+|...+.++...|++..|..+... +..+ ++.+..++..|...|.+++|+.++++++.+++.+...+..
T Consensus 1248 ----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftE 1319 (1630)
T 1xi4_A 1248 ----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE 1319 (1630)
T ss_pred ----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHH
Confidence 4678999999999999999999998774 3333 5566688999999999999999999999999999999988
Q ss_pred HHHHHHh--cCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 374 LGVVYTV--QGKMDAAAEMIEKAIAANP-----TYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (595)
Q Consensus 374 la~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (595)
+|.+|.+ -++..++++.|...+.+.| +....|..+..+|.+-|+++.|...+-..
T Consensus 1320 LaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1320 LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 8888765 4577888888988888777 67889999999999999999999554444
No 70
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.89 E-value=1.1e-21 Score=192.58 Aligned_cols=239 Identities=15% Similarity=0.131 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH
Q 007634 193 AYYNLGVVYSELMQYDTALGCYEKAALERP------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (595)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 266 (595)
.++.+|..+...|++++|+..|+++++..+ ..+.++..+|.++...|++++|+.++++++++.+.........+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 577889999999999999999999987632 24678999999999999999999999999998776543233567
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCHH
Q 007634 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWH------YADAMYNLGVAYGEMLKFDMAIVFYELAFH-----FNPHCAE 335 (595)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-----~~~~~~~ 335 (595)
.++..+|.++...|++++|+..++++++..+. ...++.++|.++...|++++|+.++++++. .+|..+.
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 88999999999999999999999999986432 245889999999999999999999999999 6787899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCC-----CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCcHHHHHH
Q 007634 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKP-----NFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAANPTYAEAYNN 407 (595)
Q Consensus 336 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~ 407 (595)
++..+|.++...|++++|+.++++++++.+ .....+..++.++...++ +.+|+.++++. ...|.....+..
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 341 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHH
Confidence 999999999999999999999999999843 335567788889999998 88888888772 233444678889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 408 LGVLYRDAGSISLAIDAYEQCLKID 432 (595)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~~~ 432 (595)
+|.+|...|++++|..+|++++++.
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
No 71
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.89 E-value=4.9e-22 Score=207.53 Aligned_cols=174 Identities=21% Similarity=0.333 Sum_probs=150.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007634 77 KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (595)
Q Consensus 77 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 156 (595)
..|++++++.++|.++..+|++++|+..|+++++++|++..++..+|.++..+|++++|+..|+++++++|++..+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a---- 79 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA---- 79 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH----
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH----
Confidence 4678888888888888888888888888888888888888888888888888888888888888888888888766
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007634 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (595)
Q Consensus 157 a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 236 (595)
+.++|.++...|++++|++.|+++++++|++..++.++|.++..+|++++|+..|+++++++|+++.++.++|.++.
T Consensus 80 ---~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 80 ---YSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 156 (723)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHH
Confidence 77778888888888888888888888888888889999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCC
Q 007634 237 NRGDLESAIACYERCLAVSPN 257 (595)
Q Consensus 237 ~~~~~~~A~~~~~~al~~~~~ 257 (595)
..|++++|.+.+++++++.|+
T Consensus 157 ~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 157 IVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HTTCCTTHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhChh
Confidence 999999999988888877554
No 72
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.88 E-value=2.1e-20 Score=183.42 Aligned_cols=314 Identities=11% Similarity=0.005 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007634 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA-----CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (595)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a 157 (595)
.++..+|.++...|++++|+..+++++...|... .++..+|.++...|++++|...+++++...+..... ...+
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~ 93 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW-HYAL 93 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-HHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH-HHHH
Confidence 3445556666666666666666666666555332 245666777777777777777777777665543222 2234
Q ss_pred HHHHHhHHHHHHhCChHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----C
Q 007634 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKID--------PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM-----Y 224 (595)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~ 224 (595)
.++..+|.++...|++++|+..+++++... |....++..+|.++...|++++|..++++++...+. .
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 556778888888888888888888888763 334567788999999999999999999999988764 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 007634 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 304 (595)
Q Consensus 225 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 304 (595)
..++..+|.++...|++++|..++++++.+.+................+.++...|++++|...+++++...+....
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--- 250 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH--- 250 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcch---
Confidence 56788999999999999999999999987643311000001111111222233344555555555554443332100
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC------CHHHHHHHHHHH
Q 007634 305 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN------FSQSLNNLGVVY 378 (595)
Q Consensus 305 ~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~ 378 (595)
.....+..+|.++...|++++|...+++++...+. ...++..+|.++
T Consensus 251 ---------------------------~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~ 303 (373)
T 1hz4_A 251 ---------------------------FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 303 (373)
T ss_dssp ---------------------------GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---------------------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHH
Confidence 00123344555555555555555555555544221 123455556666
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
...|++++|...+++++...+. ......+...| +.....+++.+...|-
T Consensus 304 ~~~g~~~~A~~~l~~al~~~~~-----~g~~~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 304 WQAGRKSDAQRVLLDALKLANR-----TGFISHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHH-----HCCCHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHhCCHHHHHHHHHHHHHHhcc-----ccHHHHHHHcc--HHHHHHHHHHHhCCCC
Confidence 6666666666666666554321 01111222222 4455555555555554
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.88 E-value=2.3e-22 Score=191.92 Aligned_cols=244 Identities=19% Similarity=0.259 Sum_probs=193.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Q 007634 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS--- 255 (595)
Q Consensus 187 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--- 255 (595)
+|....++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4556778889999999999999999999999884 56667889999999999999999999999998874
Q ss_pred --CCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007634 256 --PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--------WHYADAMYNLGVAYGEMLKFDMAIVFYEL 325 (595)
Q Consensus 256 --~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 325 (595)
++.+ ..+.++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|+.++++
T Consensus 103 ~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 103 LGKDHP----AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HCTTCH----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hCCCCh----HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2222 235567778888888999999999999999874 45567899999999999999999999999
Q ss_pred HHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC---------CC------HHHHHHHHHHHHhcC
Q 007634 326 AFHF--------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---------NF------SQSLNNLGVVYTVQG 382 (595)
Q Consensus 326 ~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---------~~------~~~~~~la~~~~~~g 382 (595)
+++. .|....++..+|.++...|++++|+.+++++++..+ .. ...+..++..+...+
T Consensus 179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (311)
T 3nf1_A 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT 258 (311)
T ss_dssp HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------C
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHH
Confidence 9998 666688999999999999999999999999997532 22 233444555566667
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 383 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
.+.+|...++++....|....++..+|.+|...|++++|..+|++++++.|+
T Consensus 259 ~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 259 SFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 7888888999999999999999999999999999999999999999999875
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.87 E-value=4.5e-20 Score=181.03 Aligned_cols=280 Identities=14% Similarity=0.015 Sum_probs=213.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC------
Q 007634 117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------ 190 (595)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~------ 190 (595)
.++..+|.++...|++++|+..+++++...|.... ...+.++..+|.++...|++++|+..+++++...+..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWF--YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCch--hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 46677888999999999999999999988775432 2345567888889999999999999999998875432
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 007634 191 APAYYNLGVVYSELMQYDTALGCYEKAALER--------PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (595)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 262 (595)
..++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|..++++++...+......
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 2346788999999999999999999988764 33456777888899999999999999999888776532111
Q ss_pred hhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CC-HHHH--
Q 007634 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP--HC-AEAC-- 337 (595)
Q Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~--~~-~~~~-- 337 (595)
...++..+|.++...|++++|...+++++...+ .. ....
T Consensus 173 ------------------------------------~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 173 ------------------------------------QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp ------------------------------------GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred ------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 123455566666667777777777777665522 11 1111
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------cHHHH
Q 007634 338 --NNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------YAEAY 405 (595)
Q Consensus 338 --~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~ 405 (595)
..++.++...|++++|..++++++...|.. ...+..+|.++...|++++|...+++++...+. ...++
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 134556788999999999999998876643 235688999999999999999999999887432 23588
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
..+|.++...|++++|...+++++.+.+.
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 89999999999999999999999998764
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=186.33 Aligned_cols=220 Identities=18% Similarity=0.218 Sum_probs=138.9
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC-
Q 007634 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSAD-----PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID- 187 (595)
Q Consensus 114 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~- 187 (595)
....++..+|.++...|++++|+.++++++... ++.+. .+.++..+|.++...|++++|+..++++++..
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 142 (311)
T 3nf1_A 67 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA----VAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 142 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555542 22222 34568889999999999999999999999874
Q ss_pred -------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 188 -------PHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (595)
Q Consensus 188 -------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 252 (595)
|....++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++
T Consensus 143 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 143 KVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 556788999999999999999999999999998 66678899999999999999999999999999
Q ss_pred hcCCCcHHHHh--hHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 007634 253 AVSPNFEIAKN--NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 330 (595)
Q Consensus 253 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 330 (595)
+..+....... .....+. ....+...+..+...+.+.+|...+.++....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 274 (311)
T 3nf1_A 223 TRAHEREFGSVDDENKPIWM----------------------------HAEEREECKGKQKDGTSFGEYGGWYKACKVDS 274 (311)
T ss_dssp HHHHHHHHC------CCHHH----------------------------HHHHHHHC-------CCSCCCC---------C
T ss_pred HHHHHhcCCCCCcchHHHHH----------------------------HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC
Confidence 76443110000 0000000 01122233333444455555555555555555
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 007634 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (595)
Q Consensus 331 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 365 (595)
|....++..+|.++...|++++|+.+|++++++.|
T Consensus 275 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 275 PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 55566666666666666666666666666665544
No 76
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.87 E-value=6.7e-20 Score=170.11 Aligned_cols=236 Identities=11% Similarity=-0.007 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHH
Q 007634 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRG--DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (595)
Q Consensus 207 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (595)
.++|+..+.+++.++|++..+|+..+.++...+ ++++++..+..++..+|++..+|.....++..+.......+++++
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 357888888888888888888888888888877 888888888888888888888888777777333222111368899
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC------HHHHHHH
Q 007634 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD--MAIVFYELAFHFNPHCAEACNNLGVIYKDRDN------LDKAVEC 356 (595)
Q Consensus 285 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~--~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~------~~~A~~~ 356 (595)
++..+.++++.+|.+..+|...+.+....|.++ +++++++++++.+|.+..+|...+.++...++ +++++++
T Consensus 129 EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~ 208 (306)
T 3dra_A 129 EFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNY 208 (306)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHH
Confidence 999999999999999999999999999999998 99999999999999999999999999999987 9999999
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-c
Q 007634 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDA-AAEMIEKAIAAN---PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK-I 431 (595)
Q Consensus 357 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~ 431 (595)
+.+++..+|.+..+|+.++.++...|+..+ ...+++++++++ |.++.++..++.++.+.|+.++|+++|+.+.+ +
T Consensus 209 ~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~ 288 (306)
T 3dra_A 209 VKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKY 288 (306)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999998555 556777777766 88899999999999999999999999999997 8
Q ss_pred CCCChhhhhhH
Q 007634 432 DPDSRNAGQNR 442 (595)
Q Consensus 432 ~p~~~~~~~~~ 442 (595)
+|-....+..+
T Consensus 289 Dpir~~yW~~~ 299 (306)
T 3dra_A 289 NPIRSNFWDYQ 299 (306)
T ss_dssp CGGGHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 99887776544
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.87 E-value=1.1e-20 Score=185.64 Aligned_cols=239 Identities=15% Similarity=0.146 Sum_probs=203.9
Q ss_pred HHHHHhHHHHHHhCChHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------C
Q 007634 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDP------HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM-------Y 224 (595)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------~ 224 (595)
..++..|..+...|++++|+..|+++++..+ ..+.++..+|.++...|++++|+.+++++++..+. .
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 3477789999999999999999999998732 24678999999999999999999999999987442 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh-----hCCCC
Q 007634 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY-----YNWHY 299 (595)
Q Consensus 225 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~ 299 (595)
..++..+|.++...|++++|+.++++++++.+..... ...+.++..+|.++...|++++|+.++++++. .+|..
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 260 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND-RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence 5678899999999999999999999999875432211 24577888999999999999999999999999 77878
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHccCCCCHHHH
Q 007634 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP-----HCAEACNNLGVIYKDRDN---LDKAVECYQMALSIKPNFSQSL 371 (595)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~-----~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~ 371 (595)
..++..+|.++...|++++|+.++++++++.+ .....+..++.++...++ +.+|+.++++. ...|....++
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~ 339 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHH
Confidence 89999999999999999999999999999843 345567788888888888 88898888873 3344556788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 007634 372 NNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (595)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~~~~al~~~ 398 (595)
..+|.+|...|++++|..+|+++++..
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999998753
No 78
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.86 E-value=2.3e-20 Score=173.07 Aligned_cols=191 Identities=15% Similarity=0.166 Sum_probs=139.0
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc---HH
Q 007634 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---AC 117 (595)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~ 117 (595)
.+.+++.++.+|..++..|+|++|+..|+++++.+|++ +.+++.+|.++...|++++|+..|+++++..|++ +.
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 44678999999999999999999999999999999999 8999999999999999999999999999998854 67
Q ss_pred HHHHHHHHHHH--------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC
Q 007634 118 AHTHCGILYKD--------EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (595)
Q Consensus 118 ~~~~la~~~~~--------~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 189 (595)
+++.+|.++.. .|++++|+..|+++++..|++......+..+... .+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~------------------------~~~ 146 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIREL------------------------RAK 146 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH------------------------HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHH------------------------HHH
Confidence 89999999999 9999999999999999999986653322111100 000
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCC
Q 007634 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGVIYKNR----------GDLESAIACYERCLAVSP 256 (595)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~----------~~~~~A~~~~~~al~~~~ 256 (595)
....++.+|.+|...|++++|+..|+++++..|+ .+.+++.+|.++... |++++|+..|+++++..|
T Consensus 147 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 147 LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 0122445555555555555555555555555554 334555555555544 455555555555555555
Q ss_pred Cc
Q 007634 257 NF 258 (595)
Q Consensus 257 ~~ 258 (595)
++
T Consensus 227 ~~ 228 (261)
T 3qky_A 227 DS 228 (261)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 79
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.86 E-value=3.3e-19 Score=165.52 Aligned_cols=234 Identities=12% Similarity=0.026 Sum_probs=216.1
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CCH
Q 007634 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM--QYDTALGCYEKAALERPMYAEAYCNMGVIY----KNR---GDL 241 (595)
Q Consensus 171 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~la~~~----~~~---~~~ 241 (595)
...++|+..+.+++.++|++..+|+..+.++..+| ++++++..+.+++..+|.+..+|...+.++ ... +++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 44579999999999999999999999999999999 999999999999999999999999999999 777 899
Q ss_pred HHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC----
Q 007634 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN--QGVAYYKKALYYNWHYADAMYNLGVAYGEMLK---- 315 (595)
Q Consensus 242 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---- 315 (595)
++++.++.++++.+|++..+|.....++..++ .++ ++++.++++++.+|.+..+|...+.++...++
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~-------~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFD-------LHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-------CTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-------ccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchh
Confidence 99999999999999999999999888888765 555 99999999999999999999999999999988
Q ss_pred --HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHccC---CCCHHHHHHHHHHHHhcCCHHHHHH
Q 007634 316 --FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK-AVECYQMALSIK---PNFSQSLNNLGVVYTVQGKMDAAAE 389 (595)
Q Consensus 316 --~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~---~~~~~~~~~la~~~~~~g~~~~A~~ 389 (595)
++++++++.+++..+|.+..+|+.++.++...|+..+ ...++++++.++ |.++.++..++.++.+.|+.++|++
T Consensus 200 ~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 9999999999999999999999999999999998555 556788888776 8889999999999999999999999
Q ss_pred HHHHHHH-hCCCcHHHHHHHHHH
Q 007634 390 MIEKAIA-ANPTYAEAYNNLGVL 411 (595)
Q Consensus 390 ~~~~al~-~~p~~~~~~~~la~~ 411 (595)
+|+.+.+ .+|-....|...+..
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHhccChHHHHHHHHHHhh
Confidence 9999997 799999988877654
No 80
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.86 E-value=5.5e-20 Score=170.49 Aligned_cols=177 Identities=12% Similarity=0.050 Sum_probs=150.2
Q ss_pred HHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 007634 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (595)
Q Consensus 75 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 151 (595)
.+.+|.++..++.+|..++..|++++|+..|+++++.+|++ +.+++.+|.++...|++++|+..|+++++..|+++.
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 34678899999999999999999999999999999999998 899999999999999999999999999999997654
Q ss_pred HHHHHHHHHHHhHHHHHH--------hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007634 152 AAECLAIVLTDLGTSLKL--------AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223 (595)
Q Consensus 152 ~~~~~a~~~~~l~~~~~~--------~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 223 (595)
. ..+++.+|.++.. .|++++|+..|+++++.+|++..+...+..+....+ .
T Consensus 88 ~----~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~-----------------~ 146 (261)
T 3qky_A 88 V----PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRA-----------------K 146 (261)
T ss_dssp H----HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH-----------------H
T ss_pred h----HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHH-----------------H
Confidence 3 3458888999998 899999999999999999988765544433322211 1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHhhHHHHHHHh
Q 007634 224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN---FEIAKNNMAIALTDL 272 (595)
Q Consensus 224 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~~l 272 (595)
....++.+|.++...|++++|+..|+++++..|+ ...++..++.++..+
T Consensus 147 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 147 LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY 198 (261)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 2344789999999999999999999999999998 566888999999877
No 81
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.86 E-value=2e-20 Score=176.21 Aligned_cols=213 Identities=16% Similarity=0.118 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQ---NMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKA 142 (595)
Q Consensus 66 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 142 (595)
+|.++++++-+.-+.....+ .++.. +++++|+..|+++ |.+|...|++++|+..|+++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence 45666666666555432211 11222 2478888888776 55677888888888888888
Q ss_pred HhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHH
Q 007634 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSEL-MQYDTALGCYE 215 (595)
Q Consensus 143 l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~-g~~~~A~~~~~ 215 (595)
+.+.+.... ....+.++.++|.++...|++++|+.+|++++++.+.. ..++.++|.+|... |++++|+.+|+
T Consensus 64 l~~~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~ 142 (292)
T 1qqe_A 64 ADYQKKAGN-EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142 (292)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHhCC-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 877543211 12235668888888888889999999988888876543 46788999999996 99999999999
Q ss_pred HHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHH
Q 007634 216 KAALERPMY------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289 (595)
Q Consensus 216 ~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 289 (595)
+++++.|.. ..++..+|.++..+|++++|+.+|++++...|++.........++..+|.++...|++++|+..|
T Consensus 143 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 222 (292)
T 1qqe_A 143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999987753 56789999999999999999999999999998865433333334444444444444555555555
Q ss_pred HHHHhhCCC
Q 007634 290 KKALYYNWH 298 (595)
Q Consensus 290 ~~~~~~~~~ 298 (595)
+++++++|.
T Consensus 223 ~~al~l~p~ 231 (292)
T 1qqe_A 223 QEGQSEDPN 231 (292)
T ss_dssp HGGGCC---
T ss_pred HHHHhhCCC
Confidence 444444444
No 82
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.85 E-value=1.5e-21 Score=186.28 Aligned_cols=320 Identities=14% Similarity=0.115 Sum_probs=116.3
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESY 139 (595)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 139 (595)
..|++++|.+++++. +++.+|..+|.++...|++++|++.|.++ +++..+...+..+...|++++|+.++
T Consensus 15 ~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 455666666666665 22346667777777777777777666543 34456666666666667777777666
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007634 140 HKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219 (595)
Q Consensus 140 ~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 219 (595)
+.+.+..++ +. +...++.+|.+.|++.++.+.++ .|+ ..+|..+|..+...|+|++|..+|.++
T Consensus 85 ~~ark~~~~-~~-------i~~~Li~~Y~Klg~l~e~e~f~~-----~pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 85 QMARKKARE-SY-------VETELIFALAKTNRLAELEEFIN-----GPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp --------------------------------CHHHHTTTTT-----CC-----------------CTTTHHHHHHHT--
T ss_pred HHHHHhCcc-ch-------hHHHHHHHHHHhCCHHHHHHHHc-----CCc-HHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 666653222 22 24445556666666666665553 132 346666666666666666666666654
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC
Q 007634 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY 299 (595)
Q Consensus 220 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 299 (595)
..+..+|.++.++|++++|++.++++ .++..|.....++.. .|+++.|..+... +.. +
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~-------~~ef~lA~~~~l~-L~~---~ 206 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD-------GKEFRLAQMCGLH-IVV---H 206 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH-------TTCHHHHHHTTTT-TTT---C
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHH-------cCcHHHHHHHHHH-HHh---C
Confidence 35666666666666666666666666 233344333333333 4566666554443 112 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHccCC-----CCHHHHH
Q 007634 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR--DNLDKAVECYQMALSIKP-----NFSQSLN 372 (595)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~~-----~~~~~~~ 372 (595)
++-...+...|.+.|++++|+.++++++.+++....++..+|.+|.+- ++..+.++.|...+.+.| .+...|.
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~ 286 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWA 286 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHH
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 333445666666666666666666666666666666666666666543 355555555555555555 5556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 373 NLGVVYTVQGKMDAAAEMIEKAIAA------------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (595)
Q Consensus 373 ~la~~~~~~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (595)
.+..+|...++++.|....-+.... .+.+.+.++.....|. +....++..+..++
T Consensus 287 e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l 353 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVL 353 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHH
T ss_pred HHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHH
Confidence 6666666666666665543333221 3344555555555444 23333444444444
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.85 E-value=3.1e-20 Score=174.87 Aligned_cols=225 Identities=16% Similarity=0.089 Sum_probs=171.9
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHcCCHHHHH
Q 007634 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ------NACAHTHCGILYKDEGRLVEAA 136 (595)
Q Consensus 63 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~ 136 (595)
++++|+..|+++ |.++...|++++|+..|.+++++.+. ...++..+|.+|...|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 488888888887 56788999999999999999998532 2578999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHh-CChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHH
Q 007634 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA-GNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDT 209 (595)
Q Consensus 137 ~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~-~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~g~~~~ 209 (595)
.+|++++++.+.... ....+.++..+|.++... |++++|+.+|++++++.|.. ..++..+|.++..+|++++
T Consensus 98 ~~~~~Al~l~~~~g~-~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQ-FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999999998765432 223456789999999996 99999999999999997754 5678999999999999999
Q ss_pred HHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhh--hcC
Q 007634 210 ALGCYEKAALERPMYAE-------AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK--LEG 280 (595)
Q Consensus 210 A~~~~~~al~~~~~~~~-------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~--~~~ 280 (595)
|+.+|+++++..|.+.. ++..+|.++..+|++++|+.+|+++++++|+...... ...+..++..+. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~--~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE--SNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH--HHHHHHHHHHHHcCCHH
Confidence 99999999999887543 6789999999999999999999999999998664322 122222332222 234
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHH
Q 007634 281 DINQGVAYYKKALYYNWHYADAMY 304 (595)
Q Consensus 281 ~~~~A~~~~~~~~~~~~~~~~~~~ 304 (595)
++++|+..|++++.++|....++.
T Consensus 255 ~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 255 QLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp THHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHHHhccCCccHHHHHHHHH
Confidence 566666666655555554443333
No 84
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.85 E-value=1.3e-17 Score=172.01 Aligned_cols=387 Identities=7% Similarity=-0.032 Sum_probs=295.5
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHcCC--CcHHH
Q 007634 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM---GRLAFDSFSEAVKLDP--QNACA 118 (595)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p--~~~~~ 118 (595)
.+.+.+.|+.++......++++.+...|++++...|.....|...+......|+ ++.+..+|++++...| .++..
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 457889999999999999999999999999999999999999999999999999 9999999999999984 57778
Q ss_pred HHHHHHHHHHcCCH----HH----HHHHHHHHHhc----CCCCHHHHHHHHHHHHHhH--HHHHHhCChHHHHHHHHHHH
Q 007634 119 HTHCGILYKDEGRL----VE----AAESYHKALSA----DPSYKPAAECLAIVLTDLG--TSLKLAGNTQDGIQKYYEAL 184 (595)
Q Consensus 119 ~~~la~~~~~~g~~----~~----A~~~~~~~l~~----~~~~~~~~~~~a~~~~~l~--~~~~~~~~~~~A~~~~~~~l 184 (595)
|..........++. ++ ....|++++.. ++.....|........... .-+..+++.+.+..+|.+++
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 87777666555543 33 44788888764 4555555443332211000 00011223444445555554
Q ss_pred hhCCCC--------------------------------------------------------------------------
Q 007634 185 KIDPHY-------------------------------------------------------------------------- 190 (595)
Q Consensus 185 ~~~~~~-------------------------------------------------------------------------- 190 (595)
......
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 321111
Q ss_pred HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCcHHHH
Q 007634 191 APAYYNLGVVYSELM-------QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI-ACYERCLAVSPNFEIAK 262 (595)
Q Consensus 191 ~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~al~~~~~~~~~~ 262 (595)
...|......-...+ ..+.....|++++...|..++.|+..+..+...|+.++|. ..|++++...|.+...+
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lw 381 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHH
Confidence 011111111111111 1234567899999999999999999999999999999997 99999999999887555
Q ss_pred hhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC-----------CC-----------CHHHHHHHHHHHHhcCCHHHHH
Q 007634 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN-----------WH-----------YADAMYNLGVAYGEMLKFDMAI 320 (595)
Q Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------~~-----------~~~~~~~la~~~~~~~~~~~A~ 320 (595)
...+.. ....|++++|..+|++++... |. ...+|...+.+....|+.+.|.
T Consensus 382 l~~a~~-------ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR 454 (679)
T 4e6h_A 382 FSLSEQ-------YELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR 454 (679)
T ss_dssp HHHHHH-------HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHH-------HHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence 544444 444678999999999998752 43 3457889999999999999999
Q ss_pred HHHHHHHhh-CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 007634 321 VFYELAFHF-NPHCAEACNNLGVIYKDRDN-LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (595)
Q Consensus 321 ~~~~~~l~~-~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 398 (595)
..|.++++. .+....+|...|.+....++ ++.|..+|+++++..|+++..+...+......|+.+.|..+|++++...
T Consensus 455 ~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 455 KIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 999999988 55557788888888777654 9999999999999999999999999999999999999999999999998
Q ss_pred C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 007634 399 P---TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (595)
Q Consensus 399 p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (595)
| ....+|......-...|+.+.+...++++.+..|+++.
T Consensus 535 ~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 535 SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 8 35678888899999999999999999999999999764
No 85
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.84 E-value=1.7e-19 Score=189.97 Aligned_cols=174 Identities=14% Similarity=0.012 Sum_probs=158.3
Q ss_pred HhCCCHHHHHHHHHHHH--------HcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q 007634 59 RSRNKFVDALALYEIVL--------EKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (595)
Q Consensus 59 ~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (595)
...|++++|+..|++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|++..+++.+|.++...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 78899999999999999 8899999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 007634 131 RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA 210 (595)
Q Consensus 131 ~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A 210 (595)
++++|+..|+++++++|++..+ +..+|.++...|++++ +..|+++++.+|++..+++++|.++...|++++|
T Consensus 482 ~~~~A~~~~~~al~l~P~~~~~-------~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTFPGELAP-------KLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHH-------HHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHH-------HHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999998776 6778888888899999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 007634 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (595)
Q Consensus 211 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 240 (595)
+..|+++++.+|++..++.++|.++...++
T Consensus 554 ~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 554 VRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999999999999877665
No 86
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.84 E-value=2e-19 Score=157.11 Aligned_cols=173 Identities=18% Similarity=0.235 Sum_probs=166.1
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 007634 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345 (595)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 345 (595)
+..+..+|..+...|++++|+..+++++...|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45667778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425 (595)
Q Consensus 346 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 425 (595)
..|++++|+.+++++++..|.+..++..+|.++...|++++|+.+++++++..|+++.++..+|.++...|++++|..++
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCChhh
Q 007634 426 EQCLKIDPDSRNA 438 (595)
Q Consensus 426 ~~al~~~p~~~~~ 438 (595)
+++++++|++...
T Consensus 168 ~~~~~~~~~~~~~ 180 (186)
T 3as5_A 168 KKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHCCCGG
T ss_pred HHHHHcCCCchhh
Confidence 9999999987654
No 87
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.84 E-value=9.7e-21 Score=158.55 Aligned_cols=146 Identities=20% Similarity=0.282 Sum_probs=116.1
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 007634 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 351 (595)
Q Consensus 272 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~ 351 (595)
+|.++...|++++|+..+++++...|+.+..++.+|.+|...|++++|+.+|+++++++|+++.++..+|.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 56666777788888888888888878777788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 007634 352 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM-IEKAIAANPTYAEAYNNLGVLYRDAGS 417 (595)
Q Consensus 352 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~g~ 417 (595)
+|+.+|+++++++|+++.++.++|.++...|++++|... ++++++++|+++.++..++.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888888888888888888888888888887766554 578888888888888888888877775
No 88
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.84 E-value=9.6e-20 Score=191.78 Aligned_cols=188 Identities=14% Similarity=-0.014 Sum_probs=162.9
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007634 185 KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA--------LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (595)
Q Consensus 185 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 256 (595)
..+|+++.+++..+ ...|++++|++.+++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 34777887777766 78899999999999999 88899999999999999999999999999999999999
Q ss_pred CcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 007634 257 NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336 (595)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 336 (595)
++..++..++.++.. .|++++|+..|+++++.+|++..++.++|.++...|++++ +..|+++++.+|++..+
T Consensus 465 ~~~~a~~~lg~~~~~-------~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a 536 (681)
T 2pzi_A 465 WRWRLVWYRAVAELL-------TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISA 536 (681)
T ss_dssp CCHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHH
T ss_pred chHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHH
Confidence 987766665555554 5799999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCC
Q 007634 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 383 (595)
Q Consensus 337 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 383 (595)
++++|.++...|++++|+..|+++++++|++..++.++|.++...++
T Consensus 537 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 537 AFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999877665
No 89
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.83 E-value=8.5e-20 Score=162.44 Aligned_cols=169 Identities=15% Similarity=0.132 Sum_probs=116.4
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHH----------------HHHHHHHhCCHHHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIG----------------KGICLQMQNMGRLAFDSFSEAVK 110 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~ 110 (595)
+++.++..|..++..|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999888888 77777777777777777777777
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhC--ChHHHHHHHHHHHhhCC
Q 007634 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG--NTQDGIQKYYEALKIDP 188 (595)
Q Consensus 111 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~--~~~~A~~~~~~~l~~~~ 188 (595)
.+|+++.++..+|.++...|++++|+..|+++++++|++..++ ..+|.++...| ....+...+.+++...|
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~-------~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAAN-------IFLGNYYYLTAEQEKKKLETDYKKLSSPTK 155 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH-------HHHHHHHHHHHHHHHHHHHHHHC---CCCH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHHhCCCc
Confidence 7777777777777777777777777777777777777776663 33333333322 23444555555543222
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 007634 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223 (595)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 223 (595)
...+++.+|.++...|++++|+..|+++++++|+
T Consensus 156 -~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 156 -MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp -HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred -hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 1234556666666666677777777777666665
No 90
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=8.1e-21 Score=181.25 Aligned_cols=356 Identities=13% Similarity=0.070 Sum_probs=203.2
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
.++.|..+|..+.+.|++++|++.|.++ +++..+...+.++...|++++|+.+++.+.+..+ ++.+...++.+|
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~-~~~i~~~Li~~Y 104 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc-cchhHHHHHHHH
Confidence 4568999999999999999999999764 4667899999999999999999999999988544 477888899999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007634 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~ 206 (595)
.+.|++.++.++++. |+. . .+..+|..+...|.|++|..+|.++ ..|..+|.++.++|+
T Consensus 105 ~Klg~l~e~e~f~~~-----pn~-~-------a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~ 163 (449)
T 1b89_A 105 AKTNRLAELEEFING-----PNN-A-------HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGE 163 (449)
T ss_dssp ----CHHHHTTTTTC-----C------------------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTC
T ss_pred HHhCCHHHHHHHHcC-----CcH-H-------HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhcc
Confidence 999999999888852 432 2 4889999999999999999999976 478899999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHH
Q 007634 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (595)
Q Consensus 207 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 286 (595)
+++|++.++++ .++.+|...+.++...|+++.|..+... +...|+. +..+...|...|.+++|+
T Consensus 164 yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~----------l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 164 YQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE----------LEELINYYQDRGYFEELI 227 (449)
T ss_dssp HHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH----------HHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh----------HHHHHHHHHHCCCHHHHH
Confidence 99999999999 4789999999999999999999877665 3344433 223556677789999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 287 AYYKKALYYNWHYADAMYNLGVAYGEM--LKFDMAIVFYELAFHFNP-----HCAEACNNLGVIYKDRDNLDKAVECYQM 359 (595)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~~l~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~ 359 (595)
.++++++..++....++..+|.++.+- ++..+.++.|...+.+.| .++..|..+..+|...++++.|+...-+
T Consensus 228 ~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 228 TMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHh
Confidence 999999999999999999999988764 577788888887777777 7888999999999999999999987766
Q ss_pred HHcc------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 360 ALSI------------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI--AANPTYAEAYNNLGVLYRDAGSISLAIDAY 425 (595)
Q Consensus 360 al~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 425 (595)
.... .+.+.++++.....|. +....++..+..++ .++++ .....+.+.|+..-...++
T Consensus 308 h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~~------r~v~~~~~~~~l~l~~~yl 379 (449)
T 1b89_A 308 HPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDHT------RAVNYFSKVKQLPLVKPYL 379 (449)
T ss_dssp STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCHH------HHHHHHHHTTCTTTTHHHH
T ss_pred CChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCcH------HHHHHHHHcCCcHHHHHHH
Confidence 5444 5677888888888877 55566677888877 44442 3345567788888888887
Q ss_pred HHHHhcCCCChhhhhhHHHHhhhccCCCcHHH
Q 007634 426 EQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 457 (595)
Q Consensus 426 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 457 (595)
+.+...+-. + .|-.+--.++...+.+.+
T Consensus 380 ~~v~~~n~~---~-vnealn~l~ieeed~~~l 407 (449)
T 1b89_A 380 RSVQNHNNK---S-VNESLNNLFITEEDYQAL 407 (449)
T ss_dssp HHHHTTCCH---H-HHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhhHH---H-HHHHHHHHHHhhhhHHHH
Confidence 666544322 1 233334445555555444
No 91
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.83 E-value=2.1e-16 Score=163.13 Aligned_cols=357 Identities=11% Similarity=-0.037 Sum_probs=265.8
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHH
Q 007634 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR---LVEAAESYH 140 (595)
Q Consensus 64 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~ 140 (595)
..+-+..|++.+..+|.+...|..+.......+.++.+...|++++...|.....|...+......|+ ++.+..+|+
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 45567788999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHhcCC--CCHHHHHHHHHHHHHhHHHHHHhCCh--------HHHHHHHHHHHhh----CCCCHHHHHHHHHHHH----
Q 007634 141 KALSADP--SYKPAAECLAIVLTDLGTSLKLAGNT--------QDGIQKYYEALKI----DPHYAPAYYNLGVVYS---- 202 (595)
Q Consensus 141 ~~l~~~~--~~~~~~~~~a~~~~~l~~~~~~~~~~--------~~A~~~~~~~l~~----~~~~~~~~~~la~~~~---- 202 (595)
+++...| .+.+.|.. ........++. +...+.|++++.. ++....+|........
T Consensus 128 Ral~~~~~~~sv~LW~~-------Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~ 200 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLS-------YITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKP 200 (679)
T ss_dssp HHTCSSSCCCCHHHHHH-------HHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCC
T ss_pred HHHHhcCCCCCHHHHHH-------HHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccc
Confidence 9999984 45555433 22222223332 3344777877764 6667777766665543
Q ss_pred -----HcCCHHHHHHHHHHHHHhCCCCH-HHHHHH---------------------------------------------
Q 007634 203 -----ELMQYDTALGCYEKAALERPMYA-EAYCNM--------------------------------------------- 231 (595)
Q Consensus 203 -----~~g~~~~A~~~~~~al~~~~~~~-~~~~~l--------------------------------------------- 231 (595)
..++.+.+..+|++++....... ..|...
T Consensus 201 ~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 201 VNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred cCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccc
Confidence 24456778888888875321111 111000
Q ss_pred --------------------------HHHHHHcCC---------HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhh
Q 007634 232 --------------------------GVIYKNRGD---------LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276 (595)
Q Consensus 232 --------------------------a~~~~~~~~---------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~ 276 (595)
..+-+...+ .+.....|++++...|.++..|...+..+..
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~----- 355 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGE----- 355 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-----
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-----
Confidence 000000000 1223456777777777777776666655544
Q ss_pred hhcCCHHHHH-HHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----------CCC-----------C
Q 007634 277 KLEGDINQGV-AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-----------NPH-----------C 333 (595)
Q Consensus 277 ~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-----------~~~-----------~ 333 (595)
.|+.++|. ..|++++...|.+...+..++.+....|++++|...|++++.. .|. .
T Consensus 356 --~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~ 433 (679)
T 4e6h_A 356 --KNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKL 433 (679)
T ss_dssp --HSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred --cCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccch
Confidence 45677886 9999999999988888899999999999999999999998874 242 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 007634 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI-KPNFSQSLNNLGVVYTVQGK-MDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (595)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (595)
..+|...+.+....|+.+.|...|.+|++. .+....++...|.+....++ ++.|...|+.+++..|+++..+...+..
T Consensus 434 ~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~f 513 (679)
T 4e6h_A 434 TYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 457888888888888999999999999887 44456677777777766654 8999999999999999999988888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC
Q 007634 412 YRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
....|+.+.|...|++++...|+
T Consensus 514 e~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHhCCCHHHHHHHHHHHHHhcCC
Confidence 88899999999999999998874
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.82 E-value=1.8e-19 Score=160.30 Aligned_cols=168 Identities=15% Similarity=0.185 Sum_probs=148.3
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHhhCC
Q 007634 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN----------------LGVAYGEMLKFDMAIVFYELAFHFNP 331 (595)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~~l~~~~ 331 (595)
.+...|..+...|++++|+..|++++..+|+++.+++. +|.++...|++++|+..|+++++.+|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 34455666667899999999999999999999999999 99999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhCCCcHHHHHHHH
Q 007634 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK--MDAAAEMIEKAIAANPTYAEAYNNLG 409 (595)
Q Consensus 332 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la 409 (595)
+++.++..+|.++...|++++|+.+|+++++++|+++.++.++|.+|...|+ ...+...+++++...|. ..+++.+|
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g 164 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDG 164 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987764 45667778777643332 34788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 410 VLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 410 ~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
.++...|++++|+.+|+++++++|+..
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999753
No 93
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.82 E-value=9.6e-19 Score=152.75 Aligned_cols=170 Identities=18% Similarity=0.212 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007634 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (595)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~ 162 (595)
..+..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++..|.+... +..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~ 81 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKV-------ATV 81 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------HHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH-------HHH
Confidence 3444455555555555555555555555555555555555555555555555555555555555544333 344
Q ss_pred hHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 007634 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242 (595)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 242 (595)
+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|+++
T Consensus 82 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 82 LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHH
Confidence 44444445555555555555555555555555566666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhcCCCcH
Q 007634 243 SAIACYERCLAVSPNFE 259 (595)
Q Consensus 243 ~A~~~~~~al~~~~~~~ 259 (595)
+|..+++++++..|++.
T Consensus 162 ~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 162 EALPHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHcCCCch
Confidence 66666666665555443
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.82 E-value=6.7e-20 Score=153.44 Aligned_cols=144 Identities=15% Similarity=0.078 Sum_probs=65.4
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHH
Q 007634 89 GICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK 168 (595)
Q Consensus 89 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~ 168 (595)
|.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|+..|+++++++|++..+ +..+|.++.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a-------~~~lg~~~~ 76 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKA-------HRFLGLLYE 76 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444444444444444333 333444444
Q ss_pred HhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcC
Q 007634 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGC-YEKAALERPMYAEAYCNMGVIYKNRG 239 (595)
Q Consensus 169 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~~~la~~~~~~~ 239 (595)
..|++++|+..|+++++++|+++.+++.+|.++...|++++|... ++++++++|+++.++..++.++...|
T Consensus 77 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 77 LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 444444444444444444444444445555555555544443332 34455555555555544444444444
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.82 E-value=3.1e-18 Score=154.55 Aligned_cols=190 Identities=13% Similarity=0.042 Sum_probs=158.9
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHH---HH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC---AH 119 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~ 119 (595)
.+++.++.+|..++..|+|++|+..|+++++..|.++ .+++.+|.++...|++++|+..|+++++.+|+++. ++
T Consensus 2 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 2 NPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 3577899999999999999999999999999998864 78999999999999999999999999999999864 78
Q ss_pred HHHHHHHHH------------------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHH
Q 007634 120 THCGILYKD------------------EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYY 181 (595)
Q Consensus 120 ~~la~~~~~------------------~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~ 181 (595)
+.+|.++.. .|++++|+..|+++++..|++..+... ...++.+...
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a----~~~l~~~~~~------------ 145 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDA----TKRLVFLKDR------------ 145 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHH----HHHHHHHHHH------------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHH----HHHHHHHHHH------------
Confidence 999999876 579999999999999999998765322 1112111110
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 007634 182 EALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA---EAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (595)
Q Consensus 182 ~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 258 (595)
.......+|.+|...|++++|+..|+++++..|+++ .++..+|.++..+|++++|+..++.+....|++
T Consensus 146 --------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 146 --------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp --------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred --------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 122345788999999999999999999999998875 678999999999999999999999988888875
Q ss_pred H
Q 007634 259 E 259 (595)
Q Consensus 259 ~ 259 (595)
.
T Consensus 218 ~ 218 (225)
T 2yhc_A 218 L 218 (225)
T ss_dssp C
T ss_pred h
Confidence 4
No 96
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.81 E-value=2.9e-17 Score=152.99 Aligned_cols=198 Identities=11% Similarity=0.035 Sum_probs=159.7
Q ss_pred HHHHHHhCCCHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHcCCCcHHHHHHH
Q 007634 54 YANILRSRNKFV-DALALYEIVLEKDSGNVEAHIGKGICLQMQNM----------GRLAFDSFSEAVKLDPQNACAHTHC 122 (595)
Q Consensus 54 ~a~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~l 122 (595)
......+.|++. +|+.++.+++..+|++..+|...+.++...+. +++++.++..++..+|++..+|...
T Consensus 35 ~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR 114 (331)
T 3dss_A 35 AVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHR 114 (331)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 334445677776 78999999999999999999999999988776 6889999999999999999999999
Q ss_pred HHHHHHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCC-hHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 007634 123 GILYKDEGR--LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN-TQDGIQKYYEALKIDPHYAPAYYNLGV 199 (595)
Q Consensus 123 a~~~~~~g~--~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~-~~~A~~~~~~~l~~~~~~~~~~~~la~ 199 (595)
+.++...++ +++++.++.++++.+|.+..+ |...+.+....|. ++++++++.++++.+|.+..+|..++.
T Consensus 115 ~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~A-------W~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ 187 (331)
T 3dss_A 115 CWLLSRLPEPNWARELELCARFLEADERNFHC-------WDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC 187 (331)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred HHHHhccCcccHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 999998884 889999999999999999887 4455555555677 589999999999999999999999998
Q ss_pred HHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhc
Q 007634 200 VYSEL--------------MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-----------GDLESAIACYERCLAV 254 (595)
Q Consensus 200 ~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~al~~ 254 (595)
++... +.++++++++.+++..+|++..+|+.+..++... +.++++++.++++++.
T Consensus 188 ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 188 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp HHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 88877 4588899999999999999988887665555544 2355566666666666
Q ss_pred CCCc
Q 007634 255 SPNF 258 (595)
Q Consensus 255 ~~~~ 258 (595)
.|++
T Consensus 268 ~pd~ 271 (331)
T 3dss_A 268 EPEN 271 (331)
T ss_dssp CTTC
T ss_pred Cccc
Confidence 6655
No 97
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.81 E-value=4e-19 Score=166.77 Aligned_cols=226 Identities=18% Similarity=0.228 Sum_probs=177.7
Q ss_pred HcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCcHHHHhhHHHHH
Q 007634 203 ELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS-----PNFEIAKNNMAIAL 269 (595)
Q Consensus 203 ~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~ 269 (595)
..|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++... ++.+ ..+.++
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~ 88 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP----AVAATL 88 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH----HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch----HHHHHH
Confidence 345666666666666552 24567788888999999999999999999888774 3322 245577
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCC
Q 007634 270 TDLGTKVKLEGDINQGVAYYKKALYY--------NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------NPHC 333 (595)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~~~~ 333 (595)
..+|.++...|++++|+..+++++.. +|....++..+|.++...|++++|+.+++++++. .|..
T Consensus 89 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 168 (283)
T 3edt_B 89 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV 168 (283)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 78888888899999999999999988 4666789999999999999999999999999998 6667
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc---------CCCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHhC
Q 007634 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI---------KPNFSQSLNNLGVVYTVQGKM------DAAAEMIEKAIAAN 398 (595)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------~~~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~ 398 (595)
..++..+|.++...|++++|+.+++++++. .+.....+..++..+...+.. .++...++......
T Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (283)
T 3edt_B 169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS 248 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC
Confidence 889999999999999999999999999986 455566777777777765543 34444444443345
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 399 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (595)
Q Consensus 399 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (595)
|....++..+|.+|..+|++++|..+|++++++.
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 6667899999999999999999999999999863
No 98
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.80 E-value=8.4e-17 Score=149.90 Aligned_cols=241 Identities=11% Similarity=0.056 Sum_probs=144.4
Q ss_pred HhCChH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 007634 169 LAGNTQ-DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ----------YDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (595)
Q Consensus 169 ~~~~~~-~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 237 (595)
..|.+. +|+..+.+++..+|++..+|+..+.++...+. +++++.++..++..+|.+..+|...+.++..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 345544 78888888888888888888888888877665 5677777777777777777777777777777
Q ss_pred cCC--HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc--
Q 007634 238 RGD--LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM-- 313 (595)
Q Consensus 238 ~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-- 313 (595)
.++ +++++.++.++++.+|.+..+|.....++..++. .++++++++.++++.+|.+..+|..++.++...
T Consensus 121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~------~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV------APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSC
T ss_pred cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhh
Confidence 763 6677777777777777766666666655555431 145666666666666666666666666665554
Q ss_pred ------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh
Q 007634 314 ------------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (595)
Q Consensus 314 ------------~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 380 (595)
+.++++++++.+++..+|++..+|+.+..++... |.. . ++ -..
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~---------------~-------~~--~~~ 250 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRC---------------E-------LS--VEK 250 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGG---------------G-------CC--HHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcc---------------c-------cc--hHH
Confidence 2344555555555555555555554333333322 100 0 00 000
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR---DAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 381 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
.+.++++++.++++++..|++..++..++.+.. ..|..++...++.+..++||-....+
T Consensus 251 ~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y 312 (331)
T 3dss_A 251 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 312 (331)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHH
Confidence 134566666666666666666444433333222 24556666667777777776655443
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.80 E-value=7.5e-18 Score=152.00 Aligned_cols=183 Identities=11% Similarity=0.016 Sum_probs=138.1
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007634 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (595)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a 157 (595)
++..++.+|..++..|++++|+..|+++++..|+++ .+++.+|.++...|++++|+..|+++++..|++... .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~----~ 78 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI----D 78 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH----H
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH----H
Confidence 567899999999999999999999999999999864 689999999999999999999999999999998753 1
Q ss_pred HHHHHhHHHHHH------------------hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007634 158 IVLTDLGTSLKL------------------AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219 (595)
Q Consensus 158 ~~~~~l~~~~~~------------------~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 219 (595)
.+++.+|.++.. .|++++|+..|+++++..|++..+...+..+....+
T Consensus 79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~-------------- 144 (225)
T 2yhc_A 79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD-------------- 144 (225)
T ss_dssp HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH--------------
Confidence 224455555544 456666666666666666665544322211111000
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHhhHHHHHHHhhhhhhhcCCHHH
Q 007634 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGTKVKLEGDINQ 284 (595)
Q Consensus 220 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (595)
........+|.++...|++++|+..|+++++..|+++ .++..++.++..+|........++.
T Consensus 145 ---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 145 ---RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp ---HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 0112336789999999999999999999999999986 6788999999999987655444443
No 100
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.80 E-value=4.9e-19 Score=166.17 Aligned_cols=157 Identities=20% Similarity=0.229 Sum_probs=131.6
Q ss_pred hCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHH
Q 007634 95 QNMGRLAFDSFSEAVKL--------DPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD-----PSYKPAAECLAIVLT 161 (595)
Q Consensus 95 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----~~~~~~~~~~a~~~~ 161 (595)
.|++++|+..|+++++. .|....++..+|.++...|++++|+..+++++... ++.+. .+.++.
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~ 89 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA----VAATLN 89 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH----HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchH----HHHHHH
Confidence 45556666666666552 25567788888888888889989988888888764 33333 355689
Q ss_pred HhHHHHHHhCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Q 007634 162 DLGTSLKLAGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYA 225 (595)
Q Consensus 162 ~l~~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~ 225 (595)
.+|.++...|++++|+.++++++.. +|....++..+|.++...|++++|+.+++++++. .|...
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 9999999999999999999999988 4667889999999999999999999999999998 67778
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 226 EAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (595)
Q Consensus 226 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 255 (595)
.++..+|.++...|++++|+.+++++++..
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999863
No 101
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.79 E-value=1.1e-18 Score=140.85 Aligned_cols=115 Identities=21% Similarity=0.267 Sum_probs=78.9
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 007634 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407 (595)
Q Consensus 328 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 407 (595)
.++|+.++.+..+|..+++.|++++|+.+|+++++++|.++.++.++|.++..+|++++|+..|+++++++|+++.+++.
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 45666666666666666666777777777777776667666677777777777777777777777777777776777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 007634 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (595)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (595)
+|.++..+|++++|+..|+++++++|++.+++.++
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 77777777777777777777777777766665543
No 102
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.79 E-value=1.6e-18 Score=139.86 Aligned_cols=121 Identities=17% Similarity=0.183 Sum_probs=114.8
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 007634 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371 (595)
Q Consensus 292 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 371 (595)
+..++|+.++.+..+|..++..|++++|+..|+++++.+|.++.++.++|.++..+|++++|+..|+++++++|++..++
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 44578888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 007634 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (595)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 412 (595)
..+|.++..+|++++|+..|+++++++|++.+++..++.++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998874
No 103
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.78 E-value=3e-16 Score=146.69 Aligned_cols=191 Identities=10% Similarity=0.035 Sum_probs=156.6
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 007634 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM-QYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238 (595)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 238 (595)
+.....+....+..++|++.+.+++..+|++..+|+..+.++...| .+++++..+++++..+|++..+|...+.++...
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRI 136 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 3333444455567789999999999999999999999999999999 599999999999999999999999999999998
Q ss_pred -C-CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhh-hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 007634 239 -G-DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK-LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315 (595)
Q Consensus 239 -~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 315 (595)
+ ++++++.++.++++.+|++..+|.....++..++..-. ....+.++++.++++++.+|.+..+|...+.++...++
T Consensus 137 ~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 8 99999999999999999999999999988888763210 01113478888888888888888888888888877776
Q ss_pred -------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 007634 316 -------FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350 (595)
Q Consensus 316 -------~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 350 (595)
++++++++.+++..+|++..+|+.+..++...|+.
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred cccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 57777777777777777777777777777666553
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.77 E-value=4.2e-18 Score=147.14 Aligned_cols=168 Identities=13% Similarity=-0.003 Sum_probs=115.7
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007634 79 SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158 (595)
Q Consensus 79 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~ 158 (595)
|...+.++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...| ++......+.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 344455666666666777777777777777777777777777777777777777777777777666666 5443221111
Q ss_pred HHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH
Q 007634 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY--AEAYCNMGVIYK 236 (595)
Q Consensus 159 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~ 236 (595)
+. +...+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. ..++..+|.++.
T Consensus 82 ~~------~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~ 155 (176)
T 2r5s_A 82 LE------LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILS 155 (176)
T ss_dssp HH------HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred HH------HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHH
Confidence 10 1112233456788888888888888888888888888888888888888888888764 558888888888
Q ss_pred HcCCHHHHHHHHHHHHh
Q 007634 237 NRGDLESAIACYERCLA 253 (595)
Q Consensus 237 ~~~~~~~A~~~~~~al~ 253 (595)
..|+.++|+..|++++.
T Consensus 156 ~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 156 ALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHCSSCHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHH
Confidence 88888888888887764
No 105
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.76 E-value=8.9e-19 Score=145.43 Aligned_cols=116 Identities=9% Similarity=0.089 Sum_probs=104.4
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 007634 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (595)
Q Consensus 321 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (595)
..+++++.++|+++.+++.+|.++...|++++|+.+|++++.++|+++.+|.++|.++..+|++++|+..|+++++++|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 45667778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
++.+++++|.+|..+|++++|+.+|++++++.|+.+
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999998865
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.76 E-value=4.4e-18 Score=146.99 Aligned_cols=164 Identities=13% Similarity=0.136 Sum_probs=147.6
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (595)
.+.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+| ++.....++.+..
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999999999999999999999999999 8877766665533
Q ss_pred -HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHc
Q 007634 128 -DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSEL 204 (595)
Q Consensus 128 -~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~ 204 (595)
..+...+|+..++++++.+|++... +..+|.++...|++++|+..|+++++.+|+. ..++..+|.++...
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~-------~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~ 157 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFEL-------ACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL 157 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence 3334456899999999999999877 7788888889999999999999999999875 66999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 007634 205 MQYDTALGCYEKAAL 219 (595)
Q Consensus 205 g~~~~A~~~~~~al~ 219 (595)
|+.++|+..|++++.
T Consensus 158 g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 158 GQGNAIASKYRRQLY 172 (176)
T ss_dssp CSSCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999999875
No 107
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.76 E-value=2e-16 Score=147.81 Aligned_cols=186 Identities=17% Similarity=0.055 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 49 KDALSYANILRSRN-KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN-MGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 49 ~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
...+..-......+ ..++|+.++++++..+|++..+|...+.++...| .+++++..+.+++..+|++..+|...+.++
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL 133 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34444444444444 4468999999999999999999999999999999 599999999999999999999999999999
Q ss_pred HHc-C-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChH--------HHHHHHHHHHhhCCCCHHHHHH
Q 007634 127 KDE-G-RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ--------DGIQKYYEALKIDPHYAPAYYN 196 (595)
Q Consensus 127 ~~~-g-~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~--------~A~~~~~~~l~~~~~~~~~~~~ 196 (595)
... + ++++++.++.++++.+|++..+ |...+.+....|.++ ++++++.++++.+|.+..+|..
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~A-------W~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~ 206 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHT-------WAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGW 206 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHH-------HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 887 7 8889999999999999988776 677777777777666 7888888888888888888888
Q ss_pred HHHHHHHcCC-------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 007634 197 LGVVYSELMQ-------YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (595)
Q Consensus 197 la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 241 (595)
++.++...+. ++++++++.+++..+|++..+|+.+..++...|+.
T Consensus 207 R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 207 RWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 8888877776 67777777777777887777777777777666654
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.76 E-value=3.1e-17 Score=153.65 Aligned_cols=169 Identities=14% Similarity=0.020 Sum_probs=156.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007634 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (595)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a 157 (595)
.|.+...++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+....
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~----- 187 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQ----- 187 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHH-----
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHH-----
Confidence 488899999999999999999999999999999999999999999999999999999999999999999954332
Q ss_pred HHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 007634 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY--AEAYCNMGVIY 235 (595)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~la~~~ 235 (595)
....+..+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|.++++.+|++ ..++..++.++
T Consensus 188 --~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 188 --GLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp --HHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred --HHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 44555566777889999999999999999999999999999999999999999999999999998 88999999999
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 007634 236 KNRGDLESAIACYERCLA 253 (595)
Q Consensus 236 ~~~~~~~~A~~~~~~al~ 253 (595)
...|+.++|...|++++.
T Consensus 266 ~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 266 AALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCcHHHHHHHHHH
Confidence 999999999999999874
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.76 E-value=1.7e-17 Score=157.30 Aligned_cols=173 Identities=15% Similarity=0.108 Sum_probs=134.1
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 007634 59 RSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM-QNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAE 137 (595)
Q Consensus 59 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 137 (595)
+..|++.+|..+++++.+..+.. ++. .+++++|+..|.++ |.+|...|++++|+.
T Consensus 2 ~~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 2 IAAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHH
Confidence 35688999999999998876642 111 58899999998876 567888999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHH
Q 007634 138 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH------YAPAYYNLGVVYSELMQYDTAL 211 (595)
Q Consensus 138 ~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~g~~~~A~ 211 (595)
.|.+++++.+.... ....+.++..+|.++...|++++|+.+|++++++.+. ...++.++|.+|.. |++++|+
T Consensus 58 ~~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 58 AYLQEAEAHANNRS-LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 99999987654322 2234667888899999999999999999998887432 24577788888888 8888888
Q ss_pred HHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 212 GCYEKAALERPMY------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257 (595)
Q Consensus 212 ~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 257 (595)
.+|++++++.+.. ..++.++|.++..+|++++|+.+|++++.+.|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 187 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 8888888876532 567778888888888888888888888876554
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.75 E-value=1e-17 Score=158.89 Aligned_cols=209 Identities=20% Similarity=0.178 Sum_probs=127.1
Q ss_pred hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE-LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACY 248 (595)
Q Consensus 170 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 248 (595)
.|++++|.++++++.+..+.. ++. .+++++|...|.++ |.+|...|++++|+..|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence 456667777776666554431 122 46666666666654 45566667777777777
Q ss_pred HHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007634 249 ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 328 (595)
Q Consensus 249 ~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 328 (595)
.+++.+.+.... ....+ .++..+|.++...|++++|+.+|+++++
T Consensus 60 ~~al~~~~~~~~-~~~~a----------------------------------~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 104 (307)
T 2ifu_A 60 LQEAEAHANNRS-LFHAA----------------------------------KAFEQAGMMLKDLQRMPEAVQYIEKASV 104 (307)
T ss_dssp HHHHHHHHHTTC-HHHHH----------------------------------HHHHHHHHHHHHTTCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHcCC-HHHHH----------------------------------HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 776655432211 11122 3444555566666666666666666655
Q ss_pred hCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007634 329 FNPH------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (595)
Q Consensus 329 ~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 396 (595)
+.+. ...++.++|.+|.. |++++|+.+|++++++.+.. ..++.++|.++..+|++++|+.+|++++.
T Consensus 105 l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 105 MYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5221 13456667777766 77777777777777665432 45667777777777777777777777777
Q ss_pred hCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 397 ANPTY------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 397 ~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
+.|++ ..++..+|.++..+|++++|+.+|++++ ++|+.....
T Consensus 184 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~ 231 (307)
T 2ifu_A 184 MYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSE 231 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSH
T ss_pred HHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCH
Confidence 64432 2366677777777777777777777777 777665443
No 111
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.75 E-value=3.3e-18 Score=154.47 Aligned_cols=240 Identities=12% Similarity=0.016 Sum_probs=189.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 007634 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM-------GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (595)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 267 (595)
+..|.-+ ..+++..|.+.|.+++..+|+..++|..+ +.++...++..+++..+.+.+.+.|.....++.+.-
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g 89 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG 89 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence 3444444 57899999999999999999999999999 889999999999999999999988876544433111
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347 (595)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 347 (595)
.| |.+-... ..-.++...++.++...|++++|.+.|..++...|.+. ..+.+|.++.+.
T Consensus 90 ~y---~~~~~~v-----------------~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~ 148 (282)
T 4f3v_A 90 LY---GDITYPV-----------------TSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAA 148 (282)
T ss_dssp TT---CCCEEEC-----------------SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHT
T ss_pred cc---ccccccc-----------------CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHc
Confidence 11 0000000 01145677788999999999999999999999999888 999999999999
Q ss_pred CCHHHHHHHHHHHHccCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CC-cHHHHHHHHHHHHHcCCHHHHH
Q 007634 348 DNLDKAVECYQMALSIKPNF--SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PT-YAEAYNNLGVLYRDAGSISLAI 422 (595)
Q Consensus 348 ~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~ 422 (595)
+++++|+.+|+++....+.. ..+++.+|.++..+|++++|+.+|++++... |. .+++++.+|.++..+|+.++|.
T Consensus 149 ~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~ 228 (282)
T 4f3v_A 149 ERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAV 228 (282)
T ss_dssp TCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999887753221 4589999999999999999999999998654 55 6789999999999999999999
Q ss_pred HHHHHHHhcCCCChhhhhhHHHHhhhccCCCcHHHH
Q 007634 423 DAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLF 458 (595)
Q Consensus 423 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (595)
..|++++..+|+ ..+. ..+....|...-+..+.+
T Consensus 229 ~~l~~a~a~~P~-~~~~-~aL~~~~~~~~~t~~~~i 262 (282)
T 4f3v_A 229 ALLEWLQTTHPE-PKVA-AALKDPSYRLKTTTAEQI 262 (282)
T ss_dssp HHHHHHHHHSCC-HHHH-HHHHCTTCCCCCCCHHHH
T ss_pred HHHHHHHhcCCc-HHHH-HHHhCCCCCCCCCcHHHH
Confidence 999999999999 5554 334555565555555443
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.74 E-value=8.7e-17 Score=150.60 Aligned_cols=161 Identities=9% Similarity=0.025 Sum_probs=136.1
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007634 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 349 (595)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 349 (595)
..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+........+..+...++
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~ 200 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAA 200 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcc
Confidence 34444455567888888888888888888888888888888888888888888888888888777677777777888888
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAGSISLAIDAYEQ 427 (595)
Q Consensus 350 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (595)
.++|+..|++++..+|++..+++++|.++...|++++|+..|+++++.+|++ ..++..++.++..+|+.++|...|++
T Consensus 201 ~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 201 DTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp SCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888887 78888888888888888888888888
Q ss_pred HHh
Q 007634 428 CLK 430 (595)
Q Consensus 428 al~ 430 (595)
++.
T Consensus 281 al~ 283 (287)
T 3qou_A 281 QLY 283 (287)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.74 E-value=5.7e-17 Score=168.06 Aligned_cols=165 Identities=16% Similarity=0.044 Sum_probs=133.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140 (595)
Q Consensus 61 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 140 (595)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHH
Q 007634 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL---MQYDTALGCYEKA 217 (595)
Q Consensus 141 ~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~a 217 (595)
++++.+|++... +..+|.++...|++++|++.|+++++.+|++..++..+|.++... |++++|+..++++
T Consensus 82 ~al~~~p~~~~~-------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAAPEHPGI-------ALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHCTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 999999988765 777888888889999999999999999999999999999999999 9999999999999
Q ss_pred HHhCCCCHHHHHHHH
Q 007634 218 ALERPMYAEAYCNMG 232 (595)
Q Consensus 218 l~~~~~~~~~~~~la 232 (595)
++.+|.....+..++
T Consensus 155 l~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 155 VAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHTCCCSCHHHHTT
T ss_pred HhcCCcccChHHHhC
Confidence 999998877776665
No 114
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.73 E-value=1.2e-17 Score=138.68 Aligned_cols=118 Identities=16% Similarity=0.148 Sum_probs=112.4
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 007634 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (595)
Q Consensus 285 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 364 (595)
+-..+++++.++|++..+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+.+|+++++++
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 33456677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 007634 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (595)
Q Consensus 365 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (595)
|+++.+++++|.+|..+|++++|+..|++++++.|+.+
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999865
No 115
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.72 E-value=2.9e-17 Score=148.32 Aligned_cols=207 Identities=16% Similarity=0.088 Sum_probs=179.5
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHH-------HHHHHHhCCHHHHHHHHHHHHHcCCCcHH---
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGK-------GICLQMQNMGRLAFDSFSEAVKLDPQNAC--- 117 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 117 (595)
...+|..|.-+ ..+++.+|.+.|.+++..+|+..++|..+ +.++...++..+++..+.+.+.+.|....
T Consensus 7 ~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~ 85 (282)
T 4f3v_A 7 LASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARI 85 (282)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEE
T ss_pred HHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhh
Confidence 45678888876 69999999999999999999999999999 89999999999999999999998876433
Q ss_pred ------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHH
Q 007634 118 ------------------AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK 179 (595)
Q Consensus 118 ------------------~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~ 179 (595)
+...++.++...|++++|.+.|..++...|.+. . .+.+|.++...+++++|+..
T Consensus 86 ~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~-------~~~~a~l~~~~~r~~dA~~~ 157 (282)
T 4f3v_A 86 AIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-V-------AWMKAVVYGAAERWTDVIDQ 157 (282)
T ss_dssp ECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-H-------HHHHHHHHHHTTCHHHHHHH
T ss_pred ccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-H-------HHHHHHHHHHcCCHHHHHHH
Confidence 445588999999999999999999988877654 3 67788899999999999999
Q ss_pred HHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 180 YYEALKIDPH--YAPAYYNLGVVYSELMQYDTALGCYEKAALER--PM-YAEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (595)
Q Consensus 180 ~~~~l~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 254 (595)
|+++....+. ...+++.+|.++..+|++++|+.+|++++... |. .+++++.+|.++..+|+.++|...|++++..
T Consensus 158 l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 158 VKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9977664322 14589999999999999999999999998654 55 6789999999999999999999999999999
Q ss_pred CCCcHHHHhh
Q 007634 255 SPNFEIAKNN 264 (595)
Q Consensus 255 ~~~~~~~~~~ 264 (595)
+|+ ..+...
T Consensus 238 ~P~-~~~~~a 246 (282)
T 4f3v_A 238 HPE-PKVAAA 246 (282)
T ss_dssp SCC-HHHHHH
T ss_pred CCc-HHHHHH
Confidence 998 655443
No 116
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.71 E-value=4.6e-17 Score=135.55 Aligned_cols=119 Identities=10% Similarity=-0.006 Sum_probs=106.1
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 007634 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (595)
Q Consensus 321 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (595)
..|++++..+|++...++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++.++|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45778888888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
++.+++.+|.++..+|++++|+.+|+++++++|+++...
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 999999999999999999999999999999988877653
No 117
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.71 E-value=4.6e-18 Score=162.95 Aligned_cols=186 Identities=15% Similarity=0.147 Sum_probs=160.6
Q ss_pred cCCHHHHHHHHHH----HHhcCCCcHHHHhhHHHHHHHhhhhh------------hhcCCHHHHHHHHHHHHhhCCCCHH
Q 007634 238 RGDLESAIACYER----CLAVSPNFEIAKNNMAIALTDLGTKV------------KLEGDINQGVAYYKKALYYNWHYAD 301 (595)
Q Consensus 238 ~~~~~~A~~~~~~----al~~~~~~~~~~~~~~~~~~~l~~~~------------~~~~~~~~A~~~~~~~~~~~~~~~~ 301 (595)
.+.+++|+..++. ++.+.|... +...|... ...+++++|+..+++++...|....
T Consensus 78 ~~~~e~al~~~~~Ge~~~l~i~p~~a---------yg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~ 148 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIVYLKPSYA---------FGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQST 148 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEEEECTTTT---------TTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHH
T ss_pred chHHHHHHhcCCCCCeEEEEECCccc---------cCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHH
Confidence 3456777777777 667777641 22222221 1456777888888888888888999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 007634 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---------------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (595)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 366 (595)
++..+|.++...|++++|+..|++++.+.|.+ ..++.++|.++...|++++|+.+|+++++++|+
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999998 699999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcC
Q 007634 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA-IDAYEQCLKID 432 (595)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~ 432 (595)
+..+++++|.++..+|++++|+..|+++++++|++..++..++.++..+|++++| ...|++++...
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999 56777776543
No 118
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.70 E-value=1.7e-15 Score=124.25 Aligned_cols=135 Identities=41% Similarity=0.645 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh
Q 007634 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (595)
Q Consensus 301 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 380 (595)
.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007634 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (595)
Q Consensus 381 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (595)
.|++++|+..+++++...|.+..++..+|.++...|++++|..+++++++.+|++
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999999999999999999999999998863
No 119
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.69 E-value=9.8e-18 Score=160.71 Aligned_cols=193 Identities=14% Similarity=0.045 Sum_probs=167.8
Q ss_pred hCCCHHHHHHHHHH----HHHcCCCCHHHHHHHHHHHH------------HhCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 007634 60 SRNKFVDALALYEI----VLEKDSGNVEAHIGKGICLQ------------MQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (595)
Q Consensus 60 ~~g~~~~A~~~~~~----~l~~~p~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (595)
..+.+++|+..++. ++...|.. ++...|.... .++++++|+..+++++..+|+++.++..+|
T Consensus 77 ~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g 154 (336)
T 1p5q_A 77 LPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERG 154 (336)
T ss_dssp CCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHH
Confidence 35578899998888 88888876 4555554432 567788899999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH
Q 007634 124 ILYKDEGRLVEAAESYHKALSADPSYK--------PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 195 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~l~~~~~~~--------~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 195 (595)
.++...|++++|+..|++++.+.|.+. ......+.++.++|.++...|++++|+..|+++++++|+++.+++
T Consensus 155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 234 (336)
T 1p5q_A 155 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLS 234 (336)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999999999873 122223456899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 007634 196 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA-IACYERCLAV 254 (595)
Q Consensus 196 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~al~~ 254 (595)
.+|.++..+|++++|+..|+++++++|++..++..++.++...|++++| ...|++++..
T Consensus 235 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 235 RRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 5567776643
No 120
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.68 E-value=4.8e-15 Score=131.92 Aligned_cols=173 Identities=17% Similarity=0.069 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcC----CHHHH
Q 007634 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG----DINQG 285 (595)
Q Consensus 210 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A 285 (595)
|+.+|+++.+. .++.+++.+|.++...+++++|+.+|+++.+. .++.+ +..+|.++.. + ++++|
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a-------~~~lg~~y~~-~g~~~~~~~A 72 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDA-------LALLAQLKIR-NPQQADYPQA 72 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHH-------HHHHHHHTTS-STTSCCHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHH-------HHHHHHHHHc-CCCCCCHHHH
Confidence 44445554443 34555555555555555555555555555432 12211 1112222222 1 34444
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----cCCHHHHHH
Q 007634 286 VAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNP--HCAEACNNLGVIYKD----RDNLDKAVE 355 (595)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~----~~~~~~A~~ 355 (595)
+.+|+++.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+..+ ..+.+++.+|.+|.. .+++++|+.
T Consensus 73 ~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 73 RQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 444444422 2344455555555554 4555555555555555444 224555555555555 445555555
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHh
Q 007634 356 CYQMALSIKPNFSQSLNNLGVVYTVQ-G-----KMDAAAEMIEKAIAA 397 (595)
Q Consensus 356 ~~~~al~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~ 397 (595)
+|+++++. +.++.+++++|.+|... | ++++|+.+|+++.+.
T Consensus 151 ~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 151 YFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 55555544 33444555555554432 1 455555555555444
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.68 E-value=2.3e-16 Score=147.19 Aligned_cols=197 Identities=11% Similarity=-0.003 Sum_probs=164.0
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (595)
..+..+..+|..++..|+|++|+..|+++++.+|+++.++..+|.++..+|++++|+..++++++.+|++..+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g 205 (595)
+...|++++|+..|+++++++|++............ ...++...........+.+..+...++.++ .|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~ 149 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL----------RIAKKKRWNSIEERRIHQESELHSYLTRLI--AA 149 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH----------HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH----------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HH
Confidence 999999999999999999998876432111111111 122223333334456777777777777765 79
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 007634 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-GDLESAIACYERCLAV 254 (595)
Q Consensus 206 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~ 254 (595)
++++|++.++++++.+|++......++.++... +.+++|...|.++.+.
T Consensus 150 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 150 ERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999888888888877776 7789999999988764
No 122
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.68 E-value=1.7e-16 Score=132.10 Aligned_cols=120 Identities=10% Similarity=0.008 Sum_probs=114.0
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 007634 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (595)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 365 (595)
...+++++..+|++...++.+|.++...|++++|+..|++++..+|.++.+++.+|.++...|++++|+.+|++++.++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 007634 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (595)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (595)
+++.+++++|.++...|++++|+..|+++++++|+++...
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 9999999999999999999999999999999998876543
No 123
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.68 E-value=2.5e-15 Score=133.80 Aligned_cols=177 Identities=14% Similarity=0.018 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 007634 65 VDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG----RLVEAAESYH 140 (595)
Q Consensus 65 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~ 140 (595)
.+|+.+|+++.+. .++.+++.+|.++...+++++|+.+|+++.+. +++.+++.+|.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3678899998875 78999999999999999999999999999875 689999999999998 7 8999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhHHHHHH----hCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----cCCHHHH
Q 007634 141 KALSADPSYKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYYEALKIDP--HYAPAYYNLGVVYSE----LMQYDTA 210 (595)
Q Consensus 141 ~~l~~~~~~~~~~~~~a~~~~~l~~~~~~----~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~----~g~~~~A 210 (595)
++.+ +.++.+ +..+|.++.. .+++++|+.+|+++.+..+ ..+.+++.+|.+|.. .+++++|
T Consensus 78 ~A~~--~g~~~a-------~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 78 KAVE--AGSKSG-------EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHH--TTCHHH-------HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHH--CCCHHH-------HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9976 455555 6777777776 7899999999999999887 358999999999999 8999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhcCC
Q 007634 211 LGCYEKAALERPMYAEAYCNMGVIYKNR-G-----DLESAIACYERCLAVSP 256 (595)
Q Consensus 211 ~~~~~~al~~~~~~~~~~~~la~~~~~~-~-----~~~~A~~~~~~al~~~~ 256 (595)
+.+|+++++. +.++.+++.+|.+|... | ++++|+.+|+++.+...
T Consensus 149 ~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 149 SEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999998 66788999999999864 3 89999999999988754
No 124
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.67 E-value=2.8e-16 Score=130.22 Aligned_cols=120 Identities=10% Similarity=0.007 Sum_probs=101.4
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 007634 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (595)
Q Consensus 321 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (595)
..|++++..+|++...++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45677777888888888888888888889999999999888888888888888999999999999999999999999998
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhh
Q 007634 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (595)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 440 (595)
++.+++.+|.++..+|++++|+.+|+++++++|+++....
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 8888899999999999999999999999988888776543
No 125
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.65 E-value=1.2e-15 Score=142.21 Aligned_cols=193 Identities=13% Similarity=0.082 Sum_probs=139.2
Q ss_pred HHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 007634 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238 (595)
Q Consensus 159 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 238 (595)
.+..+|..+...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..++++++.+|++..+++.+|.++...
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 85 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 37778888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHH
Q 007634 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 318 (595)
Q Consensus 239 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 318 (595)
|++++|+..|+++++++|++.............. .+
T Consensus 86 g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~--------------------------------------------~~ 121 (281)
T 2c2l_A 86 ESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI--------------------------------------------AK 121 (281)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH--------------------------------------------HH
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH--------------------------------------------HH
Confidence 9999999999998888775432111111111110 01
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHh
Q 007634 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ-GKMDAAAEMIEKAIAA 397 (595)
Q Consensus 319 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 397 (595)
+...........+.+..+...++.++ .|++++|++.++++++.+|++......++.++... +.+++|...|.++.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 122 KKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 11111122233455555555555544 57777888888888888887777777777666665 6677788888777654
No 126
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.65 E-value=4.3e-16 Score=129.06 Aligned_cols=127 Identities=13% Similarity=0.020 Sum_probs=114.3
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 007634 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (595)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 366 (595)
..+++++..+|++...++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+.+|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45677788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 007634 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (595)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (595)
++.+++.+|.++...|++++|+..|+++++++|+++........+..
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 131 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGA 131 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999988766555444433
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.65 E-value=8.9e-15 Score=130.67 Aligned_cols=134 Identities=16% Similarity=0.288 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh
Q 007634 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (595)
Q Consensus 301 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 380 (595)
..++.+|..+...|++++|+..|++++ +| ++.++..+|.++...|++++|+.+|+++++.+|++..++.++|.++..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 346778889999999999999999885 33 688999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCcH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 007634 381 QGKMDAAAEMIEKAIAANPTYA----------------EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (595)
Q Consensus 381 ~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (595)
.|++++|+..|+++++..|++. .+++++|.++..+|++++|+.+|+++++++|++..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 9999999999999999877655 99999999999999999999999999999998744
No 128
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=5.3e-15 Score=119.69 Aligned_cols=114 Identities=15% Similarity=0.099 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 007634 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 379 (595)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 379 (595)
+..+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..+|.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHH
Q 007634 380 VQGKMDAAAEMIEKAIAAN------PTYAEAYNNLGVLYR 413 (595)
Q Consensus 380 ~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~ 413 (595)
..|++++|+..|+++++++ |++..++..++.+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 5555555555555555555 555555555554443
No 129
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.64 E-value=3.9e-12 Score=127.77 Aligned_cols=371 Identities=9% Similarity=-0.052 Sum_probs=258.4
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHc---CCCcHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM-GRLAFDSFSEAVKL---DPQNACAHTH 121 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~~ 121 (595)
..++..+..+...+-.|+++.+..+|++++...| +.+.|..........++ .+.....|+.++.. +|.+...|..
T Consensus 12 ~~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 12 SSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 4678889999988888999999999999999888 88888888888777764 45577788888875 6788888888
Q ss_pred HHHHHH----HcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHH------hHHHHHHhCChHHHHHHHHHHHhhCCC-
Q 007634 122 CGILYK----DEGRLVEAAESYHKALSADPSYKPAAEC-LAIVLTD------LGTSLKLAGNTQDGIQKYYEALKIDPH- 189 (595)
Q Consensus 122 la~~~~----~~g~~~~A~~~~~~~l~~~~~~~~~~~~-~a~~~~~------l~~~~~~~~~~~~A~~~~~~~l~~~~~- 189 (595)
....+. ..|+.+.+..+|++++..-+.+.+.... ....-.. ........+.+..|...++.+....+.
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 877654 3567889999999999953332221111 0000000 000111223445555556555544322
Q ss_pred CHHHHHHHHHHHHHc--CC-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 007634 190 YAPAYYNLGVVYSEL--MQ-----YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (595)
Q Consensus 190 ~~~~~~~la~~~~~~--g~-----~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 262 (595)
....|......-... |- .+.....|++++...|..+..|...+..+...|+.++|...|++++.. |.+...+
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~ 249 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLS 249 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHH
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHH
Confidence 344555544432221 11 345778999999999999999999999999999999999999999999 9876554
Q ss_pred hhHHHHHHHhhhhhhhcCCHHHHHHHHHHH------HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 007634 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKA------LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 336 (595)
Q Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 336 (595)
...+... .+... ++.....+... ....+....+|...+......++.+.|...|+++ ...+.....
T Consensus 250 ~~y~~~~-e~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v 321 (493)
T 2uy1_A 250 LYYGLVM-DEEAV------YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHV 321 (493)
T ss_dssp HHHHHHT-TCTHH------HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHH
T ss_pred HHHHhhc-chhHH------HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHH
Confidence 4322210 11100 11111100000 0000112356778888888888899999999999 433345677
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 007634 337 CNNLGVIYKDRD-NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (595)
Q Consensus 337 ~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (595)
|...|.+....+ +.+.|...|+.+++..|+.+..+...+......|+.+.|...|+++ +.....|......-...
T Consensus 322 ~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~ 397 (493)
T 2uy1_A 322 FIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMV 397 (493)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHC
Confidence 777777766666 5999999999999999998888888888888999999999999987 45678888888888888
Q ss_pred CCHHHHHHHHHHHHh
Q 007634 416 GSISLAIDAYEQCLK 430 (595)
Q Consensus 416 g~~~~A~~~~~~al~ 430 (595)
|+.+.+...++++++
T Consensus 398 G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 398 GSMELFRELVDQKMD 412 (493)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998886
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.63 E-value=1.6e-15 Score=131.03 Aligned_cols=129 Identities=17% Similarity=0.224 Sum_probs=113.3
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH-HHhcCCH--HH
Q 007634 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV-YTVQGKM--DA 386 (595)
Q Consensus 310 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~--~~ 386 (595)
+...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+|+++++.+|+++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34567888899999999999999999999999999999999999999999999999999999999999 7889998 99
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 007634 387 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (595)
Q Consensus 387 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (595)
|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++++|++...
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 9999999999999999999999999999999999999999999999987644
No 131
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.63 E-value=1.6e-14 Score=118.21 Aligned_cols=133 Identities=38% Similarity=0.601 Sum_probs=126.6
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347 (595)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 347 (595)
++..+|..+...|++++|+..+++++...|.+...+..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 45566777777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 007634 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (595)
Q Consensus 348 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (595)
|++++|+..++++++..|.+..++..+|.++...|++++|...+++++..+|+
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999999886
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=1.2e-15 Score=155.58 Aligned_cols=197 Identities=12% Similarity=0.059 Sum_probs=174.6
Q ss_pred HHHHHHhCCCH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHcCCCcHHHHHHH
Q 007634 54 YANILRSRNKF-VDALALYEIVLEKDSGNVEAHIGKGICLQMQNM----------GRLAFDSFSEAVKLDPQNACAHTHC 122 (595)
Q Consensus 54 ~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~l 122 (595)
........|++ ++|+..+++++..+|++..+|...+.++...|+ +++++..+.++++.+|++..+|...
T Consensus 34 ~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR 113 (567)
T 1dce_A 34 AVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHR 113 (567)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 33444555655 577999999999999999999999999999998 9999999999999999999999999
Q ss_pred HHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhC-ChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 007634 123 GILYKDEG--RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG-NTQDGIQKYYEALKIDPHYAPAYYNLGV 199 (595)
Q Consensus 123 a~~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~la~ 199 (595)
+.++...+ ++++++.++.++++.+|.+..+ |...+.+....| .++++++++.++++.+|.+..+|..++.
T Consensus 114 ~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~a-------W~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ 186 (567)
T 1dce_A 114 CWLLSRLPEPNWARELELCARFLEADERNFHC-------WDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC 186 (567)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHhhccccccH-------HHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHH
Confidence 99999999 7799999999999999999888 555566666677 8999999999999999999999999999
Q ss_pred HHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH------------HHHHHHHHHh
Q 007634 200 VYSEL--------------MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES------------AIACYERCLA 253 (595)
Q Consensus 200 ~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~------------A~~~~~~al~ 253 (595)
++... +.++++++++.+++..+|++..+|+.++.++...+++++ |+..|.+++.
T Consensus 187 ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~ 266 (567)
T 1dce_A 187 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLT 266 (567)
T ss_dssp HHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEEC
T ss_pred HHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEecccee
Confidence 99885 568999999999999999999999999999999988666 5555677776
Q ss_pred cCCC
Q 007634 254 VSPN 257 (595)
Q Consensus 254 ~~~~ 257 (595)
++|.
T Consensus 267 ~~~~ 270 (567)
T 1dce_A 267 VGSR 270 (567)
T ss_dssp TTBT
T ss_pred cccc
Confidence 6665
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=5.2e-15 Score=119.74 Aligned_cols=111 Identities=18% Similarity=0.195 Sum_probs=104.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 007634 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (595)
Q Consensus 332 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (595)
..+..+..+|..+...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..++++++++|+++.+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcC------CCChhhhhhH
Q 007634 412 YRDAGSISLAIDAYEQCLKID------PDSRNAGQNR 442 (595)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~ 442 (595)
+..+|++++|+..|+++++++ |++..+...+
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l 118 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 118 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHH
Confidence 999999999999999999999 7776665543
No 134
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.63 E-value=1.9e-14 Score=131.70 Aligned_cols=188 Identities=11% Similarity=-0.031 Sum_probs=132.0
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP--MYAEAYCNMGVIYKNRGDLESAIACYERCLA 253 (595)
Q Consensus 176 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 253 (595)
|+..+++.+...+.....+..+|.++...|++++|++++.+.+..+| .+.+++..++.++..+|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77888888777666677778999999999999999999999999887 8899999999999999999999999999998
Q ss_pred cCCC----cHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007634 254 VSPN----FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY--ADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (595)
Q Consensus 254 ~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~l 327 (595)
.+|+ +......++..+..+.. ..+++.+|...|+++.+..|+. ...+++ ++..+|++++|...++.++
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~---g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFAT---NKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHH---TCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHH
T ss_pred cCccccccchHHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHH
Confidence 8883 22333444444333221 1236777777777776666652 222222 6666666666666666555
Q ss_pred hh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 007634 328 HF----------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371 (595)
Q Consensus 328 ~~----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 371 (595)
+. +|+++.++.+++.+....|+ +|.++++++.+.+|+++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 54 35566666666666666665 56666666666666665443
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.62 E-value=2.1e-14 Score=122.45 Aligned_cols=133 Identities=18% Similarity=0.179 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 007634 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 379 (595)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 379 (595)
+..+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+++++++.+|.++.++..+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhcC
Q 007634 380 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGV--LYRDAGSISLAIDAYEQCLKID 432 (595)
Q Consensus 380 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~ 432 (595)
..|++++|+.+++++++.+|++..++..++. .+...|++++|+..+.++..+.
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 9999999999999999999988888754444 4888899999999988876653
No 136
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.62 E-value=2.5e-14 Score=130.96 Aligned_cols=246 Identities=13% Similarity=-0.018 Sum_probs=187.1
Q ss_pred HHHHhCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 007634 166 SLKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244 (595)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 244 (595)
-.+..|+|..++.-. -+..|.+ ....+.+.++|..+|++.... . .+....+...++..+. ++ |
T Consensus 22 n~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-------~-~~~~~~a~~~la~~~~--~~---a 85 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQD-------P-TSKLGKVLDLYVQFLD--TK---N 85 (310)
T ss_dssp HHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCCC-------S-SSTTHHHHHHHHHHHT--TT---C
T ss_pred HHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccCC-------C-CCHHHHHHHHHHHHhc--cc---H
Confidence 345579999999843 3344433 356667788899999887421 1 1122334444554442 22 8
Q ss_pred HHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhcCCHHHHHHH
Q 007634 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGEMLKFDMAIVF 322 (595)
Q Consensus 245 ~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~ 322 (595)
+..+++.+...+...... ..+|.++...|++++|++.+.+.+..+| .+.+++..++.++..+|+.+.|.+.
T Consensus 86 ~~~l~~l~~~~~~~~~~~-------~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~ 158 (310)
T 3mv2_B 86 IEELENLLKDKQNSPYEL-------YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTI 158 (310)
T ss_dssp CHHHHHTTTTSCCCHHHH-------HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHH-------HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 889998887754444333 3455566667899999999999999887 7899999999999999999999999
Q ss_pred HHHHHhhCCC------CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007634 323 YELAFHFNPH------CAEACNNLGVIYKDRD--NLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIE 392 (595)
Q Consensus 323 ~~~~l~~~~~------~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~ 392 (595)
++++.+.+|+ .......-|++....| ++.+|...|+++.+..|+ ....+++ ++..+|++++|...++
T Consensus 159 l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 159 FDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHH
T ss_pred HHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHH
Confidence 9999999983 2333333455566666 999999999999988887 3344444 8999999999999999
Q ss_pred HHHHh----------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 393 KAIAA----------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 393 ~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
.+++. +|+++.++.++..+...+|+ +|.+++.++.+.+|+++...
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 88776 48899999999999999998 89999999999999998553
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=3.1e-15 Score=152.51 Aligned_cols=194 Identities=10% Similarity=0.061 Sum_probs=163.9
Q ss_pred HHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhh---hhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC--CH
Q 007634 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK---VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML--KF 316 (595)
Q Consensus 242 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~ 316 (595)
++|+..+.+++..+|++..+|...+.++..++.. ......+++++..++++++.+|++..+|...+.++...+ ++
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 4556666666666666666555555555554310 000113899999999999999999999999999999999 77
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc--------------
Q 007634 317 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRD-NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ-------------- 381 (595)
Q Consensus 317 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-------------- 381 (595)
++++..++++++.+|.+..+|...+.++...| .++++++++.++++.+|.+..+|..++.++...
T Consensus 126 ~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~ 205 (567)
T 1dce_A 126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE 205 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCH
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccH
Confidence 99999999999999999999999999999999 999999999999999999999999999999885
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH------------HHHHHHHHHhcCCCC
Q 007634 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL------------AIDAYEQCLKIDPDS 435 (595)
Q Consensus 382 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~------------A~~~~~~al~~~p~~ 435 (595)
+.+++|++++.+++..+|++..+|+.++.++...+++++ |+.+|.+++.++|..
T Consensus 206 ~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 206 NVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred HHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 568999999999999999999999999999999998776 566688888888764
No 138
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.61 E-value=3.8e-14 Score=133.39 Aligned_cols=177 Identities=12% Similarity=0.015 Sum_probs=148.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 007634 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA------CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (595)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 151 (595)
+|.....+...+..+...|++++|+..+.++++..+... ..++.+|.++...|++++|+..+++++...+....
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 344556777889999999999999999999999887654 34667889999999999999999999987665433
Q ss_pred HHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Q 007634 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL---KIDPHYA----PAYYNLGVVYSELMQYDTALGCYEKAALERPM- 223 (595)
Q Consensus 152 ~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l---~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~- 223 (595)
.. ..+.++..+|.++...|++++|+.+|++++ +..|++. .+++++|.+|..+|++++|+.+++++++..+.
T Consensus 151 ~~-~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~ 229 (293)
T 2qfc_A 151 VY-QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp TT-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 22 246678999999999999999999999999 4456543 68999999999999999999999999987532
Q ss_pred -----CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcC
Q 007634 224 -----YAEAYCNMGVIYKNRGDLESA-IACYERCLAVS 255 (595)
Q Consensus 224 -----~~~~~~~la~~~~~~~~~~~A-~~~~~~al~~~ 255 (595)
...+++++|.++...|++++| ..++++++.+.
T Consensus 230 ~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 278899999999999999999 88899988653
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.61 E-value=5.1e-14 Score=132.48 Aligned_cols=174 Identities=11% Similarity=0.079 Sum_probs=109.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 007634 224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAM 303 (595)
Q Consensus 224 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 303 (595)
....+...+..+...|++++|+..+.++++..+...... ..... +
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~-~~~~~----------------------------------~ 118 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ-QFLQW----------------------------------Q 118 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHH-HHHHH----------------------------------H
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHH-HHHHH----------------------------------H
Confidence 345566677788888888888888888888777644321 11222 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH---ccCCCCH----HH
Q 007634 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMAL---SIKPNFS----QS 370 (595)
Q Consensus 304 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al---~~~~~~~----~~ 370 (595)
+.+|.++...|++++|+.++++++...+.. ..++..+|.+|...|++++|+.+|++++ +..|++. .+
T Consensus 119 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~ 198 (293)
T 2qfc_A 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV 198 (293)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHH
Confidence 334455555555555555555555443222 3456666666666666666666666666 3334322 46
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcC
Q 007634 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPT------YAEAYNNLGVLYRDAGSISLA-IDAYEQCLKID 432 (595)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~ 432 (595)
+.++|.+|..+|++++|+.++++++++.++ ...+++++|.+|..+|++++| ..+|++++.+.
T Consensus 199 ~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 199 RYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 667777777777777777777777665322 256777777777777777777 66677777654
No 140
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.61 E-value=9.4e-15 Score=124.38 Aligned_cols=114 Identities=27% Similarity=0.376 Sum_probs=104.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 007634 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (595)
Q Consensus 331 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (595)
+..+..+..+|.++...|++++|+.+|+++++++|++..++.++|.++...|++++|+.+|+++++++|+++.+++.+|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHH
Q 007634 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (595)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 444 (595)
++..+|++++|+.+|+++++++|++..++....+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 9999999999999999999999999887666533
No 141
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.61 E-value=2e-14 Score=128.41 Aligned_cols=152 Identities=17% Similarity=0.205 Sum_probs=133.7
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007634 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (595)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 346 (595)
..+..+|..+...|++++|+..|++++ . .++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--D-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 345667777888899999999999995 3 3789999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHccCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 007634 347 RDNLDKAVECYQMALSIKPNFS----------------QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (595)
Q Consensus 347 ~~~~~~A~~~~~~al~~~~~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (595)
.|++++|+..|+++++..|.+. .++.++|.++...|++++|+..|+++++.+|+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-------- 155 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR-------- 155 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG--------
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc--------
Confidence 9999999999999999888766 8999999999999999999999999999999862
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCC
Q 007634 411 LYRDAGSISLAIDAYEQCLKIDP 433 (595)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~p 433 (595)
.+..++|+..+.+.....|
T Consensus 156 ----~~~~~~a~~~~~~~~~~~~ 174 (213)
T 1hh8_A 156 ----HSKIDKAMECVWKQKLYEP 174 (213)
T ss_dssp ----GGHHHHHHHHHHTTCCCCC
T ss_pred ----cchHHHHHHHHHhcccccc
Confidence 3455666666665544443
No 142
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.61 E-value=2.8e-14 Score=134.30 Aligned_cols=172 Identities=13% Similarity=0.111 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc------H
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVE------AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN------A 116 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 116 (595)
..+...+..++..|+|++|+..++++++..+.++. .+..+|.++...|++++|+..|+++++..+.. .
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 155 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 44556788999999999999999999998777655 33458888888999999999999999965442 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC------
Q 007634 117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------ 190 (595)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~------ 190 (595)
.++..+|.+|...|++++|+.+|+++++.....+......+.++.++|.++...|++++|+.+++++++..+..
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 37899999999999999999999999964322111222345567777777777777777777777777653322
Q ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Q 007634 191 APAYYNLGVVYSELMQ-YDTALGCYEKAALE 220 (595)
Q Consensus 191 ~~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 220 (595)
+.+++.+|.++..+|+ +++|+.++++++.+
T Consensus 236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 5566666666666663 46666666666543
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.60 E-value=7.5e-15 Score=126.84 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=119.9
Q ss_pred hhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCH--HH
Q 007634 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI-YKDRDNL--DK 352 (595)
Q Consensus 276 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~-~~~~~~~--~~ 352 (595)
+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|+++++.+|.++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 44578999999999999999999999999999999999999999999999999999999999999999 8899999 99
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 007634 353 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (595)
Q Consensus 353 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (595)
|+.+++++++.+|++..++..+|.++...|++++|+..|+++++.+|++....
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999999999999999999999999999999999999999999999875544
No 144
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.60 E-value=5.8e-15 Score=120.23 Aligned_cols=107 Identities=11% Similarity=0.081 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------
Q 007634 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPN-------F-----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------ 397 (595)
Q Consensus 336 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-------~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 397 (595)
.+..+|..+...|++++|+..|+++++++|+ + ..+|.++|.++..+|++++|+..+++++++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 4445555555555555555555555555555 2 338888999999999999999999999988
Q ss_pred -CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 007634 398 -NPTYAEAY----NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (595)
Q Consensus 398 -~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (595)
+|++..+| +++|.++..+|++++|+..|+++++++|++......+
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999 9999999999999999999999999999988766553
No 145
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.60 E-value=2e-14 Score=116.06 Aligned_cols=114 Identities=16% Similarity=0.153 Sum_probs=100.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007634 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (595)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~ 160 (595)
.+.++..+|..++..|++++|+..|+++++++|+++.++..+|.+|..+|++++|+..|+++++++|++...+..++.++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999988877777788888
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH
Q 007634 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 195 (595)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 195 (595)
..+|.++...|++++|++.|++++...|+ +....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHH
Confidence 99999999999999999999999888775 44433
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.60 E-value=2e-14 Score=117.43 Aligned_cols=121 Identities=16% Similarity=0.148 Sum_probs=93.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 007634 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (595)
Q Consensus 297 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 376 (595)
|.....+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+++++++.+|.+..++..+|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 44566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 007634 377 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 417 (595)
Q Consensus 377 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 417 (595)
++...|++++|+.+++++++.+|++..++..++.++..+|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 77777777777777777777777777777777777776653
No 147
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.59 E-value=2.2e-15 Score=132.84 Aligned_cols=151 Identities=20% Similarity=0.154 Sum_probs=117.3
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHH
Q 007634 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA----------------EACNNLGV 342 (595)
Q Consensus 279 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~----------------~~~~~la~ 342 (595)
.+.++++.+.+.......+.....+..+|..+...|++++|+..|++++...|.++ .++.++|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 96 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 96 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 34566665555554444455567788889999999999999999999998888776 88889999
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 007634 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422 (595)
Q Consensus 343 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 422 (595)
++...|++++|+.+++++++++|++..+++.+|.++..+|++++|+.+|+++++++|++..++..++.++..+++..++.
T Consensus 97 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 97 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888877776
Q ss_pred -HHHHHHH
Q 007634 423 -DAYEQCL 429 (595)
Q Consensus 423 -~~~~~al 429 (595)
..|.+.+
T Consensus 177 ~~~~~~~f 184 (198)
T 2fbn_A 177 KLTFGGMF 184 (198)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 4444443
No 148
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.59 E-value=5.4e-14 Score=132.36 Aligned_cols=161 Identities=12% Similarity=0.054 Sum_probs=136.8
Q ss_pred hhhhhhcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHH
Q 007634 273 GTKVKLEGDINQGVAYYKKALYYNWHYAD------AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNL 340 (595)
Q Consensus 273 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~l 340 (595)
...+...+++++|...+++++...+..+. .+..+|.++...+++++|+.++++++...+.. ..++..+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 44555678999999999999998877655 33458999999999999999999999964432 3479999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcc-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------HHHHHH
Q 007634 341 GVIYKDRDNLDKAVECYQMALSI-------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNN 407 (595)
Q Consensus 341 a~~~~~~~~~~~A~~~~~~al~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 407 (595)
|.+|...|++++|+.+|+++++. .+....++.++|.+|..+|++++|+.++++++++.+.. +.++++
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99999999999999999999953 22335689999999999999999999999999875433 789999
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 007634 408 LGVLYRDAG-SISLAIDAYEQCLKIDP 433 (595)
Q Consensus 408 la~~~~~~g-~~~~A~~~~~~al~~~p 433 (595)
+|.++..+| ++++|+.+|++++.+..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 999999999 57999999999998754
No 149
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.58 E-value=2.4e-14 Score=116.49 Aligned_cols=121 Identities=22% Similarity=0.281 Sum_probs=104.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 007634 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377 (595)
Q Consensus 298 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 377 (595)
.....+..+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+.+++++++..|++..++..+|.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 34567888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 007634 378 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418 (595)
Q Consensus 378 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 418 (595)
+...|++++|+.+++++++.+|++..++..++.++..+|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888887764
No 150
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.58 E-value=5.8e-14 Score=114.65 Aligned_cols=122 Identities=16% Similarity=0.157 Sum_probs=111.1
Q ss_pred cCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 007634 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (595)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (595)
........++.+|..++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|+++.++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhC
Q 007634 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171 (595)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~ 171 (595)
|.++...|++++|+..|++++..+|.+... +..++.++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-------~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEA-------ADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHH-------HHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHH-------HHHHHHHHHHhc
Confidence 999999999999999999999999988776 444555544444
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.58 E-value=2.6e-14 Score=121.63 Aligned_cols=115 Identities=22% Similarity=0.226 Sum_probs=107.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 007634 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (595)
Q Consensus 297 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 376 (595)
+.....+..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+|+++++++|++..+++.+|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 007634 377 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (595)
Q Consensus 377 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (595)
++..+|++++|+.+|+++++++|++..++..++..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 99999999999999999999999998877666654
No 152
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.58 E-value=1.8e-14 Score=115.16 Aligned_cols=101 Identities=16% Similarity=0.155 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 007634 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (595)
Q Consensus 336 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (595)
.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCh
Q 007634 416 GSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 416 g~~~~A~~~~~~al~~~p~~~ 436 (595)
|++++|+..|+++++++|++.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888888764
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.57 E-value=3.2e-14 Score=114.78 Aligned_cols=108 Identities=19% Similarity=0.249 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH
Q 007634 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (595)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 270 (595)
+.++.++|..++..|++++|+.+|+++++++|+++.++.++|.+|..+|++++|+..+++++++.|++...+..++.++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999988877666666777777
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHhhCCC
Q 007634 271 DLGTKVKLEGDINQGVAYYKKALYYNWH 298 (595)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 298 (595)
.+|.++...|++++|++.|++++...|+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 7777777777888888888877777664
No 154
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.57 E-value=1.5e-13 Score=117.11 Aligned_cols=135 Identities=14% Similarity=0.066 Sum_probs=124.5
Q ss_pred hhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 007634 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342 (595)
Q Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~ 342 (595)
...+..+..+|..+...|++++|+..+++++...|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|.
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 34567788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHh
Q 007634 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV--VYTVQGKMDAAAEMIEKAIAA 397 (595)
Q Consensus 343 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~ 397 (595)
++...|++++|+.+|+++++.+|.+..++..++. .+...|++++|+..+.++...
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999999999999999999999999988855544 488899999999999987654
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.57 E-value=5.7e-15 Score=130.17 Aligned_cols=167 Identities=16% Similarity=0.053 Sum_probs=118.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---------HHH
Q 007634 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA---------AEC 155 (595)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---------~~~ 155 (595)
....+.+....|++++|.+.+.......+.....+..+|..+...|++++|+..|++++...|.++.. ...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 86 (198)
T 2fbn_A 7 HHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI 86 (198)
T ss_dssp ---------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHH
T ss_pred ccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 33445555666777777766666555555666777777888888888888888888888777765411 011
Q ss_pred HHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007634 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235 (595)
Q Consensus 156 ~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 235 (595)
...++..+|.++...|++++|+..++++++.+|++..+++.+|.++...|++++|+..|+++++.+|++..++..++.++
T Consensus 87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 87 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 23558889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHH-HHHHHH
Q 007634 236 KNRGDLESAI-ACYERC 251 (595)
Q Consensus 236 ~~~~~~~~A~-~~~~~a 251 (595)
...++..++. ..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9888877776 444443
No 156
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.57 E-value=5.5e-14 Score=140.65 Aligned_cols=229 Identities=14% Similarity=0.121 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (595)
...+..|..+...|+|++|++.|.++++..|.........+......+..+ .++..+|.+|..
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------~al~~l~~~y~~ 67 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQE-----------------TSILELGQLYVT 67 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHH-----------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHH-----------------HHHHHHHHHHHH
Confidence 456778888888899999999998888888776544333322222222222 234667888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC------CCCHHHHHHHHHHHH
Q 007634 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID------PHYAPAYYNLGVVYS 202 (595)
Q Consensus 129 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~------~~~~~~~~~la~~~~ 202 (595)
.|++++|.+.+.+++...+...... ....+...+|.++...|++++|+.++++++... +....++..+|.++.
T Consensus 68 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 146 (434)
T 4b4t_Q 68 MGAKDKLREFIPHSTEYMMQFAKSK-TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHY 146 (434)
T ss_dssp HTCHHHHHHHHHHTHHHHHTSCHHH-HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHccchH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 8888888888888877655543321 223446667777778888999999888887652 234678889999999
Q ss_pred HcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhh
Q 007634 203 ELMQYDTALGCYEKAALE------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276 (595)
Q Consensus 203 ~~g~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~ 276 (595)
..|++++|+..+++++.. .+....++..+|.+|...|++++|..++++++...+.........+.++..+|..+
T Consensus 147 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~ 226 (434)
T 4b4t_Q 147 QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILH 226 (434)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT
T ss_pred HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Confidence 999999999999998875 23346789999999999999999999999998875543333344567777888888
Q ss_pred hhcCCHHHHHHHHHHHHhh
Q 007634 277 KLEGDINQGVAYYKKALYY 295 (595)
Q Consensus 277 ~~~~~~~~A~~~~~~~~~~ 295 (595)
...+++.+|..+|.+++..
T Consensus 227 ~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 227 CEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp TSSSCHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 8888888888888887754
No 157
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.55 E-value=2.6e-13 Score=109.24 Aligned_cols=117 Identities=42% Similarity=0.622 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 007634 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 379 (595)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 379 (595)
...+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 56677777788888888888888888887777777777888888888888888888888888777777777778888888
Q ss_pred hcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 007634 380 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416 (595)
Q Consensus 380 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 416 (595)
..|++++|+.+++++++.+|+++.++..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8888888888888888878877777777777776554
No 158
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.55 E-value=3e-15 Score=149.77 Aligned_cols=147 Identities=18% Similarity=0.164 Sum_probs=131.7
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHH
Q 007634 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---------------AEACNNLGV 342 (595)
Q Consensus 278 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---------------~~~~~~la~ 342 (595)
..+++++|+..++.++...|.....+..+|..+...|++++|+..|+++++++|.+ ..++.++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34567777878888888888888999999999999999999999999999999988 689999999
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 007634 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422 (595)
Q Consensus 343 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 422 (595)
++..+|++++|+.+|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.++..+|++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred HH
Q 007634 423 DA 424 (595)
Q Consensus 423 ~~ 424 (595)
..
T Consensus 406 ~~ 407 (457)
T 1kt0_A 406 RR 407 (457)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 159
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.55 E-value=3.6e-14 Score=115.55 Aligned_cols=110 Identities=17% Similarity=0.067 Sum_probs=101.7
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-------CHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHc---
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG-------NVE-----AHIGKGICLQMQNMGRLAFDSFSEAVKL--- 111 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~--- 111 (595)
.+..++..|..++..|+|++|+..|+++++.+|+ +.. +|.++|.++..+|++++|+..|++++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4677899999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ----CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007634 112 ----DPQNACAH----THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (595)
Q Consensus 112 ----~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 156 (595)
+|++..+| +.+|.++..+|++++|+..|++++++.|++......+
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999 9999999999999999999999999999876654333
No 160
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.55 E-value=5e-14 Score=112.51 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (595)
..++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCH
Q 007634 129 EGRLVEAAESYHKALSADPSYK 150 (595)
Q Consensus 129 ~g~~~~A~~~~~~~l~~~~~~~ 150 (595)
.|++++|+..|+++++.+|++.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999999754
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.54 E-value=9.4e-14 Score=114.14 Aligned_cols=104 Identities=16% Similarity=0.162 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 007634 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (595)
Q Consensus 331 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (595)
|.++..+..+|.++...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..++++++++|+++.+++.+|.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 411 LYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
++..+|++++|+..|+++++++|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 555555555555555555555554
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.53 E-value=1.5e-13 Score=112.85 Aligned_cols=124 Identities=16% Similarity=0.077 Sum_probs=112.9
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH
Q 007634 294 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 373 (595)
Q Consensus 294 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 373 (595)
...|.++..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++++|+++.++..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHcCC
Q 007634 374 LGVVYTVQGKMDAAAEMIEKAIAANPT-----YAEAYNNLGVLYRDAGS 417 (595)
Q Consensus 374 la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~ 417 (595)
+|.++...|++++|+..|+++++++|+ +..+...+..+......
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887 66777777776655443
No 163
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.52 E-value=1.8e-13 Score=111.24 Aligned_cols=102 Identities=21% Similarity=0.218 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (595)
+..++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HcCCHHHHHHHHHHHHhcCCCC
Q 007634 128 DEGRLVEAAESYHKALSADPSY 149 (595)
Q Consensus 128 ~~g~~~~A~~~~~~~l~~~~~~ 149 (595)
..|++++|+..++++++..|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~ 113 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDN 113 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTC
T ss_pred HhCCHHHHHHHHHHHHhcCccc
Confidence 4444444444444444444443
No 164
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.52 E-value=4.3e-13 Score=106.66 Aligned_cols=110 Identities=15% Similarity=0.234 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc
Q 007634 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 381 (595)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 381 (595)
.+..+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555444444455555555455555555555555444444444444444444444
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 007634 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (595)
Q Consensus 382 g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (595)
|++++|...++++++.+|+++.++..++.+
T Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 555555555544444444444444444443
No 165
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.51 E-value=1e-13 Score=117.66 Aligned_cols=103 Identities=18% Similarity=0.144 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHF------------------NPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 361 (595)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 361 (595)
...+...|..++..|++++|+..|++++.. +|....++.++|.++...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345566666666777777777777666665 33333444444444444444444444444444
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 007634 362 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (595)
Q Consensus 362 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (595)
+++|+++.+++.+|.++..+|++++|+..|+++++++|++.
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 44444444444444444444444444444444444444444
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.50 E-value=4.8e-15 Score=148.77 Aligned_cols=140 Identities=17% Similarity=0.197 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh
Q 007634 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (595)
Q Consensus 301 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 380 (595)
..+..+|..+...|++++|+..|+++++.+|++..++.++|.++..+|++++|+..++++++++|+++.++.++|.+|..
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34556677788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhcCCCChhhhh
Q 007634 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVL--YRDAGSISLAIDAYE-----------QCLKIDPDSRNAGQ 440 (595)
Q Consensus 381 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~~~~~~ 440 (595)
+|++++|+..|+++++++|++..++..++.+ +...|++++|++.++ ++++++|+...+..
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~ 159 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKL 159 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCC
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccccccc
Confidence 9999999999999999999998888888888 888899999999999 88888887755543
No 167
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.50 E-value=2e-13 Score=120.73 Aligned_cols=160 Identities=14% Similarity=0.052 Sum_probs=113.4
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------cCCCcHHHHHHHHHHHHHcCC
Q 007634 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK------LDPQNACAHTHCGILYKDEGR 131 (595)
Q Consensus 58 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~g~ 131 (595)
++..|++++|...++.+....+....++..+|.++...|++++|+..++++++ ..|....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 46789999999966655443336788999999999999999999999999998 344566789999999999999
Q ss_pred HHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHH
Q 007634 132 LVEAAESYHKALSA---DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--Y----APAYYNLGVVYS 202 (595)
Q Consensus 132 ~~~A~~~~~~~l~~---~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~--~----~~~~~~la~~~~ 202 (595)
+++|+..+++++.. .+++. ...+.++..+|.++...|++++|+..+++++...+. + ..++..+|.++.
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 158 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDP---LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQ 158 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccH---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 99999999999987 33222 123555777777777777777777777777654211 1 223455555555
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 007634 203 ELMQYDTALGCYEKAALE 220 (595)
Q Consensus 203 ~~g~~~~A~~~~~~al~~ 220 (595)
..|++++|+.++++++++
T Consensus 159 ~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 159 QEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHH
Confidence 555555555555555543
No 168
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.50 E-value=2.9e-13 Score=119.70 Aligned_cols=158 Identities=19% Similarity=0.179 Sum_probs=132.0
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHH
Q 007634 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHCAEACNNLGVIYKDRDNLD 351 (595)
Q Consensus 278 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~~~~~ 351 (595)
..|++++|.+.++......+....++..+|.++...|++++|+.++++++.. .+....++..+|.++...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4689999999666555544466889999999999999999999999999984 3445788999999999999999
Q ss_pred HHHHHHHHHHcc---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--Cc----HHHHHHHHHHHHHcCCH
Q 007634 352 KAVECYQMALSI---KPN----FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP--TY----AEAYNNLGVLYRDAGSI 418 (595)
Q Consensus 352 ~A~~~~~~al~~---~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~ 418 (595)
+|+.++++++++ .++ ...++.++|.++...|++++|+.++++++...+ .+ ..++..+|.++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 999999999988 442 356789999999999999999999999997632 12 34578999999999999
Q ss_pred HHHHHHHHHHHhcCCCC
Q 007634 419 SLAIDAYEQCLKIDPDS 435 (595)
Q Consensus 419 ~~A~~~~~~al~~~p~~ 435 (595)
++|..++++++++....
T Consensus 164 ~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 164 LEAQQHWLRARDIFAEL 180 (203)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999875543
No 169
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.49 E-value=4e-13 Score=113.91 Aligned_cols=105 Identities=19% Similarity=0.106 Sum_probs=100.6
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEK------------------DSGNVEAHIGKGICLQMQNMGRLAFDSFSE 107 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 107 (595)
..+..+...|..++..|+|++|+..|++++.. +|.+..++..+|.++..+|++++|+..+++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 35778999999999999999999999999998 677778999999999999999999999999
Q ss_pred HHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 007634 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150 (595)
Q Consensus 108 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 150 (595)
+++++|+++.+++.+|.++...|++++|+..|++++.++|++.
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 9999999999999999999999999999999999999999987
No 170
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.49 E-value=1.7e-11 Score=123.07 Aligned_cols=326 Identities=7% Similarity=-0.075 Sum_probs=181.3
Q ss_pred hCC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC-HHHHHH
Q 007634 60 SRN-KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR-LVEAAE 137 (595)
Q Consensus 60 ~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~ 137 (595)
..| ++..|..+|++++...|. |+++.+...|++++...| +.+.|..........+. .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHH
Confidence 456 488999999999998886 889999999999999888 77788887777776663 355677
Q ss_pred HHHHHHhc---CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 138 SYHKALSA---DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214 (595)
Q Consensus 138 ~~~~~l~~---~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 214 (595)
.|+.++.. ++.+...|......+.... ...++.+.+...|++++...+....-+...-..+....+...+...+
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~---~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIE---DEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCS---SHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhch---hhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHH
Confidence 88888874 5556555443332211100 12456788999999999864333332222222222222222232222
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHhhHHHHHHHhhhhh--hhcCCHHHHHHHHHH
Q 007634 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTDLGTKV--KLEGDINQGVAYYKK 291 (595)
Q Consensus 215 ~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~ 291 (595)
.+.. +.+..|...++.+....+. ....|...... ..+.-. ...+........|++
T Consensus 147 ~~~~--------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~--E~~~~~~~~~~~~~~Rv~~~ye~ 204 (493)
T 2uy1_A 147 GDTL--------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDL--EMENGMKLGGRPHESRMHFIHNY 204 (493)
T ss_dssp HHHH--------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHH--HHTCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHh--------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHH--HhcCCccCcchhhHHHHHHHHHH
Confidence 2211 1233344444444332221 11122211111 100000 000013456788999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH----------------------------
Q 007634 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI---------------------------- 343 (595)
Q Consensus 292 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~---------------------------- 343 (595)
++...|..+.+|...+..+...|+.++|...|++++.. |.+...+...+..
T Consensus 205 al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~ 283 (493)
T 2uy1_A 205 ILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSK 283 (493)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhccc
Confidence 99999999999999999999999999999999999999 8876655544433
Q ss_pred ------------HHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 007634 344 ------------YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG-KMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (595)
Q Consensus 344 ------------~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (595)
....++.+.|...|+++ ...+.....+...|.+....+ +.+.|...|+.+++..|+.+..+...+.
T Consensus 284 ~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid 362 (493)
T 2uy1_A 284 ELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 11233444555555555 222222334444444433333 3555555555555555555554444455
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 007634 411 LYRDAGSISLAIDAYEQC 428 (595)
Q Consensus 411 ~~~~~g~~~~A~~~~~~a 428 (595)
.....|+.+.|...|+++
T Consensus 363 ~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHTCHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 555555555555555554
No 171
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.49 E-value=1.9e-14 Score=144.00 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHHHhHHHHH
Q 007634 97 MGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK--------PAAECLAIVLTDLGTSLK 168 (595)
Q Consensus 97 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--------~~~~~~a~~~~~l~~~~~ 168 (595)
++++|+..|+.+++..|+....+..+|.++...|++++|+..|++++.+.|.+. ........++.++|.++.
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444444331 112223455788888888
Q ss_pred HhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-
Q 007634 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC- 247 (595)
Q Consensus 169 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~- 247 (595)
..|++++|+..|+++++++|++..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++++++...
T Consensus 329 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~ 408 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRI 408 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888888877643
Q ss_pred HHHHH
Q 007634 248 YERCL 252 (595)
Q Consensus 248 ~~~al 252 (595)
+.+++
T Consensus 409 ~~~~f 413 (457)
T 1kt0_A 409 YANMF 413 (457)
T ss_dssp HHHC-
T ss_pred HHHHH
Confidence 44433
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=7.4e-13 Score=110.27 Aligned_cols=109 Identities=16% Similarity=0.165 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 007634 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407 (595)
Q Consensus 331 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 407 (595)
|.....+..+|..+...|++++|+.+|+++++..|++ ..++..+|.++...|++++|+..++++++.+|+++.+++.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3444444444444444444444444444444444444 4444555555555555555555555555555555555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 007634 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (595)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (595)
+|.++...|++++|+.+|+++++++|++..++
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 136 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQ 136 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 55555555555555555555555555544443
No 173
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.49 E-value=1.7e-13 Score=107.87 Aligned_cols=107 Identities=14% Similarity=0.085 Sum_probs=87.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--cHHHHHH
Q 007634 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT--YAEAYNN 407 (595)
Q Consensus 330 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 407 (595)
+|+++.++..+|.++...|++++|+.+++++++..|.+..++..+|.++...|++++|+.+++++++.+|+ +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 46667777788888888888888888888888888888888888888888888888888888888888888 8888888
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHhcCCCCh
Q 007634 408 LGVLYRDA-GSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 408 la~~~~~~-g~~~~A~~~~~~al~~~p~~~ 436 (595)
+|.++... |++++|++++++++...|+++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888888 888888888888888887654
No 174
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.49 E-value=2e-12 Score=103.96 Aligned_cols=66 Identities=36% Similarity=0.427 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148 (595)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 148 (595)
.+++.+|.++...|++++|+..++++++..|++..++..+|.++...|++++|+..+++++...|.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 75 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc
Confidence 334444444444444444444444444444444444444444444444444444444444433333
No 175
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.49 E-value=1.7e-12 Score=103.13 Aligned_cols=111 Identities=17% Similarity=0.140 Sum_probs=104.8
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
.++.++..|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007634 127 KDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a 157 (595)
...|++++|+..++++++.+|++...+..++
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999999999999999999887744433
No 176
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.48 E-value=5.4e-14 Score=134.69 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=87.2
Q ss_pred hHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 007634 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 343 (595)
Q Consensus 264 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 343 (595)
..+..+..+|..+...|++++|+..|++++...|.+. .+...+++.++...+. ..+++++|.+
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~---------~~~~~nla~~ 239 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK---------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH---------THHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH---------HHHHHHHHHH
Confidence 3455666667777777777777777777776666543 1222333333333221 1478899999
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCHHHHH
Q 007634 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL-YRDAGSISLAI 422 (595)
Q Consensus 344 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~ 422 (595)
+..+|++++|+.+|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.+ ....+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988 44567788889
Q ss_pred HHHHHHHhcCCCChh
Q 007634 423 DAYEQCLKIDPDSRN 437 (595)
Q Consensus 423 ~~~~~al~~~p~~~~ 437 (595)
..|.+++...|+++.
T Consensus 320 ~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 320 EMYKGIFKGKDEGGA 334 (338)
T ss_dssp ---------------
T ss_pred HHHHHhhCCCCCCCC
Confidence 999999999998764
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.47 E-value=1.2e-12 Score=106.14 Aligned_cols=102 Identities=22% Similarity=0.215 Sum_probs=53.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 007634 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGV 410 (595)
Q Consensus 337 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 410 (595)
++.+|.++...|++++|+..|+++++..|++. .+++.+|.++...|++++|+..|++++..+|++ +.+++.+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34445555555555555555555555555444 455555555555555555555555555555554 445555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 007634 411 LYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (595)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (595)
++..+|++++|+..|+++++.+|+++.+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 5555555555555555555555554443
No 178
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=5e-12 Score=105.15 Aligned_cols=113 Identities=21% Similarity=0.143 Sum_probs=106.3
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHH
Q 007634 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120 (595)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (595)
.......++..|..++..|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..++++++.+|+++.+++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 34678899999999999999999999999999999987 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007634 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (595)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 156 (595)
.+|.++...|++++|+..|++++..+|++...+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 139 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 999999999999999999999999999988774443
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.46 E-value=1.7e-12 Score=105.24 Aligned_cols=106 Identities=23% Similarity=0.174 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc---HHHHHHH
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHC 122 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 122 (595)
+.++.+|..++..|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|+++++.+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3578899999999999999999999999999988 799999999999999999999999999999999 8899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007634 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (595)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 154 (595)
|.++...|++++|+..|++++...|++.....
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 99999999999999999999999999876643
No 180
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.45 E-value=2e-13 Score=110.88 Aligned_cols=93 Identities=18% Similarity=0.231 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---
Q 007634 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK----------MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA--- 415 (595)
Q Consensus 349 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--- 415 (595)
.+++|++.++++++++|+++++|.++|.++...++ +++|+..|+++++++|+...+++++|.+|..+
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l 96 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL 96 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc
Confidence 44444555555555555555555555554444443 45777777777777777777777777777766
Q ss_pred --------CCHHHHHHHHHHHHhcCCCChhhhhh
Q 007634 416 --------GSISLAIDAYEQCLKIDPDSRNAGQN 441 (595)
Q Consensus 416 --------g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (595)
|++++|+++|++|++++|++...+.+
T Consensus 97 ~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 97 TPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 48999999999999999998765544
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.45 E-value=2.3e-13 Score=136.63 Aligned_cols=136 Identities=15% Similarity=0.112 Sum_probs=122.6
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 007634 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345 (595)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 345 (595)
+..+..+|..+...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..++++++++|+++.+++++|.++.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34466788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH-----------HHHHhCCCc
Q 007634 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVV--YTVQGKMDAAAEMIE-----------KAIAANPTY 401 (595)
Q Consensus 346 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~ 401 (595)
.+|++++|++.|+++++++|++..++..++.+ +...|++++|++.++ +++...|+.
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 99999999999999999999999999999998 889999999999999 777776653
No 182
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.44 E-value=8.5e-13 Score=103.84 Aligned_cols=106 Identities=15% Similarity=0.161 Sum_probs=100.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--CHHHHHH
Q 007634 296 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN--FSQSLNN 373 (595)
Q Consensus 296 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~ 373 (595)
+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.+++++++..|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57778889999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHhCCCc
Q 007634 374 LGVVYTVQ-GKMDAAAEMIEKAIAANPTY 401 (595)
Q Consensus 374 la~~~~~~-g~~~~A~~~~~~al~~~p~~ 401 (595)
+|.++... |++++|++++++++...|.+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999999 99999999999999998864
No 183
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.43 E-value=9e-13 Score=107.05 Aligned_cols=114 Identities=18% Similarity=0.227 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-------HHHHH
Q 007634 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-------SQSLN 372 (595)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~ 372 (595)
+..+..+|.++...|++++|+.++++++...|.++.++..+|.++...|++++|+.++++++...|.+ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666666666666666665544 55666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 007634 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 414 (595)
Q Consensus 373 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 414 (595)
.+|.++...|++++|+.+|+++++..| ++.....++.+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 666666666666666666666666655 35555555555443
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.43 E-value=1.2e-12 Score=126.56 Aligned_cols=123 Identities=19% Similarity=0.192 Sum_probs=100.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 007634 302 AMYNLGVAYGEMLKFDMAIVFYELAFH----------------FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (595)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~~l~----------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 365 (595)
.+..+|..+...|++++|+..|+++++ .+|....++.++|.++..+|++++|+.+++++++++|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 455566666666666666666666665 6677788888999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 007634 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424 (595)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 424 (595)
++..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..+++.+++...
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888999999988888888777643
No 185
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.42 E-value=4.9e-12 Score=126.39 Aligned_cols=204 Identities=10% Similarity=0.067 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMY-----------------AEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (595)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 255 (595)
.....|..+...|++++|++.|.++++..|.. ..++..+|.+|...|++++|.+++.+++...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666655542 2357788889999999999999988888776
Q ss_pred CCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 007634 256 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN------WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (595)
Q Consensus 256 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 329 (595)
+...... ....+...++.++...|++++|+.++++++... +....++..+|.++...|++++|+..+++++..
T Consensus 86 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 86 MQFAKSK-TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HTSCHHH-HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHccchH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 5543322 223456667777888889999999998888653 223668889999999999999999999998875
Q ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC---CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007634 330 ------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---NF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (595)
Q Consensus 330 ------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~ 396 (595)
.+...+++..+|.+|...|++++|..++++++...+ .. ...+..+|.++...|++++|..+|.++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 165 FKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 233467889999999999999999999999987632 22 35677888889999999999999999887
Q ss_pred h
Q 007634 397 A 397 (595)
Q Consensus 397 ~ 397 (595)
.
T Consensus 245 ~ 245 (434)
T 4b4t_Q 245 S 245 (434)
T ss_dssp H
T ss_pred H
Confidence 5
No 186
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.41 E-value=6.8e-13 Score=107.78 Aligned_cols=87 Identities=21% Similarity=0.326 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc----
Q 007634 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN----------LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ---- 381 (595)
Q Consensus 316 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---- 381 (595)
+++|+..++++++++|+++++|+++|.++...++ +++|+..|+++++++|++..+++++|.+|..+
T Consensus 18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~ 97 (158)
T 1zu2_A 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT 97 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccC
Confidence 4444444444444444444444444444444433 45777777777777777777777777777666
Q ss_pred -------CCHHHHHHHHHHHHHhCCCcH
Q 007634 382 -------GKMDAAAEMIEKAIAANPTYA 402 (595)
Q Consensus 382 -------g~~~~A~~~~~~al~~~p~~~ 402 (595)
|++++|+.+|+++++++|++.
T Consensus 98 P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 98 PDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 478888888888888888764
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.41 E-value=8.1e-13 Score=126.47 Aligned_cols=102 Identities=13% Similarity=0.122 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH-HH
Q 007634 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV-YT 379 (595)
Q Consensus 301 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~ 379 (595)
.++.++|.++...|++++|+..|+++++++|++..+++++|.++..+|++++|+.+|+++++++|++..++..++.+ ..
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999998 45
Q ss_pred hcCCHHHHHHHHHHHHHhCCCcH
Q 007634 380 VQGKMDAAAEMIEKAIAANPTYA 402 (595)
Q Consensus 380 ~~g~~~~A~~~~~~al~~~p~~~ 402 (595)
..+..+++...|.+++...|+++
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCC
Confidence 56778899999999999988765
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.40 E-value=5.7e-13 Score=105.89 Aligned_cols=93 Identities=12% Similarity=0.191 Sum_probs=72.1
Q ss_pred cCCHHHHHHHHHHHHcc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 007634 347 RDNLDKAVECYQMALSI---KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 423 (595)
Q Consensus 347 ~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 423 (595)
.|++++|+.+|+++++. +|++..++.++|.++...|++++|+.+|+++++.+|+++.+++.+|.++..+|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 56777888888888887 477777888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCCChhhh
Q 007634 424 AYEQCLKIDPDSRNAG 439 (595)
Q Consensus 424 ~~~~al~~~p~~~~~~ 439 (595)
.++++++..|+++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 8888888888776654
No 189
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.39 E-value=3e-12 Score=103.88 Aligned_cols=123 Identities=17% Similarity=0.135 Sum_probs=96.4
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007634 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (595)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~ 160 (595)
.+..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.++++++...|.+.........++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 45678888888888889999999999888888888888888999999999999999999998888776533333345557
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (595)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (595)
..+|.++...|++++|+..|+++++..| ++.....++.+....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 7778888888888888888888888777 466666666665443
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.38 E-value=5.1e-13 Score=106.13 Aligned_cols=94 Identities=19% Similarity=0.180 Sum_probs=71.4
Q ss_pred cCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007634 313 MLKFDMAIVFYELAFHF---NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389 (595)
Q Consensus 313 ~~~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 389 (595)
.|++++|+..|+++++. +|+++.++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 56777777788888777 477777888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCCCcHHHHH
Q 007634 390 MIEKAIAANPTYAEAYN 406 (595)
Q Consensus 390 ~~~~al~~~p~~~~~~~ 406 (595)
.+++++...|+++.+..
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 88888888887766543
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.38 E-value=3e-12 Score=108.41 Aligned_cols=134 Identities=25% Similarity=0.266 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------H
Q 007634 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------S 368 (595)
Q Consensus 301 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~ 368 (595)
.++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+.+++++++..+.. .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 456667777777777777777777777664321 2467778888888888888888888887764332 5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
.++..+|.++...|++++|+.+++++++..+ ....++..+|.++...|++++|..++++++++...
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888888888887632 12467888999999999999999999999887554
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.37 E-value=5.9e-12 Score=121.67 Aligned_cols=132 Identities=14% Similarity=0.076 Sum_probs=121.1
Q ss_pred HHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007634 259 EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY----------------YNWHYADAMYNLGVAYGEMLKFDMAIVF 322 (595)
Q Consensus 259 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------------~~~~~~~~~~~la~~~~~~~~~~~A~~~ 322 (595)
.......+..+..+|..+...|++++|+..|+++++ ..|....++.++|.++..+|++++|+.+
T Consensus 216 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 295 (370)
T 1ihg_A 216 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS 295 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 344445566788888899999999999999999998 6777788999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007634 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 390 (595)
Q Consensus 323 ~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 390 (595)
++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++++++.+.
T Consensus 296 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 296 CLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988887653
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.31 E-value=2.2e-11 Score=102.97 Aligned_cols=140 Identities=20% Similarity=0.256 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC------
Q 007634 117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------ 190 (595)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~------ 190 (595)
.++..+|.++...|++++|+..++++++..+.... ....+.++..+|.++...|++++|+..++++++..+..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45666677777777777777777777665443211 12334567777777888888888888888877764332
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 191 APAYYNLGVVYSELMQYDTALGCYEKAALERP------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257 (595)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 257 (595)
..++..+|.++...|++++|+.+++++++..+ ....++..+|.++...|++++|+.++++++++...
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 56778888899999999999999988887632 12567888899999999999999999998876543
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.19 E-value=1.9e-10 Score=90.75 Aligned_cols=81 Identities=22% Similarity=0.254 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 007634 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (595)
Q Consensus 319 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 398 (595)
|+..|+++++.+|+++.+++.+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|++++++.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444443
Q ss_pred C
Q 007634 399 P 399 (595)
Q Consensus 399 p 399 (595)
|
T Consensus 84 ~ 84 (115)
T 2kat_A 84 Q 84 (115)
T ss_dssp H
T ss_pred c
Confidence 3
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.19 E-value=1e-11 Score=97.50 Aligned_cols=92 Identities=16% Similarity=0.237 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------HHHHHH
Q 007634 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNN 407 (595)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 407 (595)
+..+..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..++++++++|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666666666666666666665 556666
Q ss_pred HHHHHHHcCCHHHHHHHH
Q 007634 408 LGVLYRDAGSISLAIDAY 425 (595)
Q Consensus 408 la~~~~~~g~~~~A~~~~ 425 (595)
+|.++..+|++++|+..+
T Consensus 84 ~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHhHhhhHhHH
Confidence 666666666555554433
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.17 E-value=2.4e-10 Score=85.74 Aligned_cols=83 Identities=42% Similarity=0.596 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 007634 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (595)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (595)
+.++..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+++++++.+|+++.++..+|.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666665
Q ss_pred HcC
Q 007634 414 DAG 416 (595)
Q Consensus 414 ~~g 416 (595)
.+|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.17 E-value=2.3e-11 Score=95.42 Aligned_cols=95 Identities=9% Similarity=0.063 Sum_probs=87.3
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc------HHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN------ACAHT 120 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 120 (595)
+++.++.+|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999999999998 88999
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 007634 121 HCGILYKDEGRLVEAAESYHK 141 (595)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~ 141 (595)
.+|.++...|++++|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999888877766554
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.15 E-value=5.7e-10 Score=88.03 Aligned_cols=83 Identities=18% Similarity=0.224 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA 145 (595)
Q Consensus 66 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 145 (595)
+|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 007634 146 DPS 148 (595)
Q Consensus 146 ~~~ 148 (595)
.|.
T Consensus 83 ~~~ 85 (115)
T 2kat_A 83 AQS 85 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 775
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.12 E-value=7.5e-10 Score=82.99 Aligned_cols=84 Identities=25% Similarity=0.328 Sum_probs=69.3
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
.+..++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45677788888888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred HHcC
Q 007634 127 KDEG 130 (595)
Q Consensus 127 ~~~g 130 (595)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 6654
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.08 E-value=5.4e-10 Score=111.06 Aligned_cols=127 Identities=9% Similarity=-0.026 Sum_probs=105.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhh-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CCC---CH
Q 007634 305 NLGVAYGEMLKFDMAIVFYELAFHF-----NPH---CAEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPN---FS 368 (595)
Q Consensus 305 ~la~~~~~~~~~~~A~~~~~~~l~~-----~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~---~~ 368 (595)
..+..+..+|+|++|+..+++++++ .++ ....+.++|.+|..+|+|++|+.++++++++ .|+ ..
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 3445567889999999999999876 333 3667889999999999999999999999876 344 45
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAA-----NPTY---AEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (595)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (595)
..+.+||.+|..+|++++|+.+|++++++ .|++ .+...+++.++..+|.+++|...|+++.+-
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999976 4554 466788999999999999999999998653
No 201
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.07 E-value=1.9e-10 Score=87.92 Aligned_cols=91 Identities=13% Similarity=0.146 Sum_probs=64.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 007634 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416 (595)
Q Consensus 338 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 416 (595)
+..|.++...|++++|+..|+++++.+|++.. ++..+|.++...|++++|+..|+++++++|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45666677777777777777777777777777 77777777777777777777777777777777666543 4
Q ss_pred CHHHHHHHHHHHHhcCCCCh
Q 007634 417 SISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 417 ~~~~A~~~~~~al~~~p~~~ 436 (595)
.+.++...|+++...+|+++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHhccCcccc
Confidence 55667777777777766654
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.06 E-value=4.3e-10 Score=86.01 Aligned_cols=74 Identities=22% Similarity=0.355 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 007634 364 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (595)
Q Consensus 364 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (595)
+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.+|..+|++++|+..|++++++.|+..+
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 57777777777777777777777777777777777777777778888888888888888888887777665443
No 203
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.05 E-value=3e-10 Score=86.80 Aligned_cols=92 Identities=15% Similarity=0.198 Sum_probs=81.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q 007634 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVE-AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (595)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (595)
.+..|..++..|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|+++++.+|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 467899999999999999999999999999999 99999999999999999999999999999999887743
Q ss_pred CCHHHHHHHHHHHHhcCCCCH
Q 007634 130 GRLVEAAESYHKALSADPSYK 150 (595)
Q Consensus 130 g~~~~A~~~~~~~l~~~~~~~ 150 (595)
+.+.+++..|+++...+|++.
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 567788888888877776643
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.04 E-value=7.2e-09 Score=84.39 Aligned_cols=88 Identities=18% Similarity=0.207 Sum_probs=42.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Q 007634 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD- 414 (595)
Q Consensus 340 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~- 414 (595)
+|.+|...+..++|+++|+++.+. .++.+++++|.+|.. .+++++|+.+|+++.+. .++.+.++||.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence 444444444444444444444443 344444455554444 44555555555555443 334455555555555
Q ss_pred ---cCCHHHHHHHHHHHHhc
Q 007634 415 ---AGSISLAIDAYEQCLKI 431 (595)
Q Consensus 415 ---~g~~~~A~~~~~~al~~ 431 (595)
.+++++|+.+|+++.+.
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHHC
Confidence 45555555555555544
No 205
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.03 E-value=1e-08 Score=91.17 Aligned_cols=108 Identities=18% Similarity=0.107 Sum_probs=93.4
Q ss_pred hhCCCCHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHhc-----CCHHHHHH
Q 007634 328 HFNPHCAEACNNLGVIYKD-----RD------NLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQ-----GKMDAAAE 389 (595)
Q Consensus 328 ~~~~~~~~~~~~la~~~~~-----~~------~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~-----g~~~~A~~ 389 (595)
+.+|++++.++..|.+... .| ...+|...++++++++|+ +..++..+|.+|... |+.++|..
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 3477888887777766543 12 457899999999999999 677999999999995 99999999
Q ss_pred HHHHHHHhCCCc-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCC
Q 007634 390 MIEKAIAANPTY-AEAYNNLGVLYRD-AGSISLAIDAYEQCLKIDPDS 435 (595)
Q Consensus 390 ~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~ 435 (595)
+|+++++++|+. ..+++..|..+.. .|++++|..++++++..+|..
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999999999975 9999999999988 599999999999999998874
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.02 E-value=5.6e-09 Score=85.04 Aligned_cols=122 Identities=21% Similarity=0.287 Sum_probs=106.7
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 007634 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAV 354 (595)
Q Consensus 279 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~ 354 (595)
.+++++|+.+|+++.+....... +|.+|...+..++|+.+|+++.+. .++.+++++|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 46789999999999988754444 999999999999999999999987 679999999999999 89999999
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 007634 355 ECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (595)
Q Consensus 355 ~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (595)
.+|+++.+. .++.+.+++|.+|.. .+++++|+.+|+++.+.. ++.+...|+.
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~~ 137 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILNN 137 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC--
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHhh
Confidence 999999987 679999999999999 899999999999999874 4566655543
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.02 E-value=1.4e-09 Score=83.10 Aligned_cols=70 Identities=17% Similarity=0.284 Sum_probs=46.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 007634 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399 (595)
Q Consensus 330 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 399 (595)
+|+++.+++.+|.++...|++++|+.+|+++++++|+++.++..+|.++...|++++|+..|++++++.|
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 4666666666666666666666666666666666666666666666666666666666666666666544
No 208
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.00 E-value=4e-09 Score=104.84 Aligned_cols=133 Identities=17% Similarity=0.037 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-----CCCc
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEK-----DSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKL-----DPQN 115 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~ 115 (595)
...+..+..+..+|+|++|+.+++++++. .|++ ...+..+|.+|..+|+|++|+.+++++++. .|++
T Consensus 310 ~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 389 (490)
T 3n71_A 310 KDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN 389 (490)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34556677788999999999999999985 3445 467899999999999999999999999975 3444
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHh
Q 007634 116 ---ACAHTHCGILYKDEGRLVEAAESYHKALSA-----DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185 (595)
Q Consensus 116 ---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 185 (595)
...+.++|.+|..+|++++|+..|++++++ .|+++.. +.+...++.++..++.+++|...|.++.+
T Consensus 390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~----~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPIT----KDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557899999999999999999999999874 6777665 44456677777777778888877777654
No 209
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.98 E-value=1.7e-08 Score=89.80 Aligned_cols=186 Identities=11% Similarity=0.022 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---------------------CHHHHHHHHHHHHHcCCCcHHHHHHH
Q 007634 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQN---------------------MGRLAFDSFSEAVKLDPQNACAHTHC 122 (595)
Q Consensus 64 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---------------------~~~~A~~~~~~al~~~p~~~~~~~~l 122 (595)
..-.+.+++-++..+|++...+...|..|..-+ ++..|...|.++.+. ...
T Consensus 48 ~P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y--------~~r 119 (301)
T 3u64_A 48 LPLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY--------ALS 119 (301)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH--------HHH
T ss_pred ccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH--------HHH
Confidence 345677888899999999876666555543221 233555555555431 111
Q ss_pred HHHHHHcCCHHHHHH-----HHHH-HHhcCCCCHHHHHHHHHHHHHhHHH----HHHhCChHHHHHHHHHHHhhCCC--C
Q 007634 123 GILYKDEGRLVEAAE-----SYHK-ALSADPSYKPAAECLAIVLTDLGTS----LKLAGNTQDGIQKYYEALKIDPH--Y 190 (595)
Q Consensus 123 a~~~~~~g~~~~A~~-----~~~~-~l~~~~~~~~~~~~~a~~~~~l~~~----~~~~~~~~~A~~~~~~~l~~~~~--~ 190 (595)
+ +......+.+++. -+.. +-..+|++.+.....+.++...+.. ....+...+|...++++++++|+ +
T Consensus 120 a-L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~ 198 (301)
T 3u64_A 120 S-LETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQE 198 (301)
T ss_dssp H-HHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHH
T ss_pred H-HHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCccc
Confidence 1 1111222222222 1222 3345677777766666555443221 12233467899999999999999 6
Q ss_pred HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCc
Q 007634 191 APAYYNLGVVYSEL-----MQYDTALGCYEKAALERPMY-AEAYCNMGVIYKN-RGDLESAIACYERCLAVSPNF 258 (595)
Q Consensus 191 ~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~ 258 (595)
..+|..+|.+|... |+.++|..+|+++++++|+. ...++..|..+.. .|++++|..++++++...|..
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 77999999999995 99999999999999999975 9999999999988 599999999999999988773
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.92 E-value=4.5e-08 Score=91.20 Aligned_cols=144 Identities=19% Similarity=0.129 Sum_probs=111.7
Q ss_pred HHhhCCCCHHH--HHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----HH---HHH-HHHH
Q 007634 292 ALYYNWHYADA--MYNLGVAYGEMLK---FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN----LD---KAV-ECYQ 358 (595)
Q Consensus 292 ~~~~~~~~~~~--~~~la~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~----~~---~A~-~~~~ 358 (595)
+....|.+..+ ++..|..+...+. ..+|+.+|+++++++|+.+.++..++.++..... .. +++ ..++
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 34445665544 3445666655544 5899999999999999999999888887753211 11 111 1222
Q ss_pred --HHHccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 007634 359 --MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (595)
Q Consensus 359 --~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (595)
.++...|.++.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|.+.|.+|+.++|..+
T Consensus 266 a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 266 NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 233567899999999999999999999999999999999975 77889999999999999999999999999999875
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.86 E-value=4.8e-07 Score=84.38 Aligned_cols=155 Identities=13% Similarity=0.045 Sum_probs=112.2
Q ss_pred HHHHcCCCCHHHH--HHHHHHHHHhCC---HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007634 73 IVLEKDSGNVEAH--IGKGICLQMQNM---GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147 (595)
Q Consensus 73 ~~l~~~p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 147 (595)
++....|.++.+| +..|..++..++ ..+|+.+|+++++++|+++.++..++.+|.. .. ...+
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~-----------~~--~~~~ 251 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIV-----------RH--SQHP 251 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----------HH--HHSC
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----------Hh--ccCC
Confidence 3445566665544 455666665544 4678888888888888888888888777761 01 1112
Q ss_pred CCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 007634 148 SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227 (595)
Q Consensus 148 ~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 227 (595)
..... .. ....+... ..++..+|..+.++..++..+...|++++|+..+++++.++|+ ...
T Consensus 252 ~~~~~-------~~----------~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a 312 (372)
T 3ly7_A 252 LDEKQ-------LA----------ALNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLN 312 (372)
T ss_dssp CCHHH-------HH----------HHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHH
T ss_pred Cchhh-------HH----------HHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHH
Confidence 21111 00 01222221 1334667999999999999999999999999999999999975 778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 007634 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (595)
Q Consensus 228 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 259 (595)
+..+|.++...|++++|++.|++++.++|..+
T Consensus 313 ~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 313 YVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 89999999999999999999999999999865
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.78 E-value=5e-08 Score=72.45 Aligned_cols=72 Identities=15% Similarity=0.080 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007634 364 KPNFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (595)
Q Consensus 364 ~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (595)
+|+++..+..+|.+++..++ .++|...++++++.+|+++.+++.+|..+...|++++|+.+++++++.+|++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57788888888888876555 6888888888888888888888888888888888888888888888888884
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.77 E-value=7.8e-08 Score=71.40 Aligned_cols=72 Identities=15% Similarity=0.060 Sum_probs=63.3
Q ss_pred CCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007634 78 DSGNVEAHIGKGICLQMQNM---GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149 (595)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 149 (595)
+|++++.+..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+.+++++++.+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68888999999999876665 6899999999999999999999999999999999999999999999988873
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.77 E-value=4.7e-08 Score=78.34 Aligned_cols=93 Identities=11% Similarity=0.036 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhC-C-CcHHHHHHHHHHHHHcCCHHHHHH
Q 007634 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMIEKAIAAN-P-TYAEAYNNLGVLYRDAGSISLAID 423 (595)
Q Consensus 349 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~ 423 (595)
....+.+.|.+.++.++.+.++.+++|+++.+.+ +.++++..++.+++.+ | +..+++++||..+.++|+|++|++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3456777888888888889999999999999988 6669999999999998 7 568999999999999999999999
Q ss_pred HHHHHHhcCCCChhhhhh
Q 007634 424 AYEQCLKIDPDSRNAGQN 441 (595)
Q Consensus 424 ~~~~al~~~p~~~~~~~~ 441 (595)
+++++++++|++..+..-
T Consensus 93 y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHH
Confidence 999999999999877543
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.69 E-value=2.8e-07 Score=73.85 Aligned_cols=93 Identities=11% Similarity=0.007 Sum_probs=83.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHcC-C-CcHHHHHHHHHHHHHcCCHHHHH
Q 007634 62 NKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN---MGRLAFDSFSEAVKLD-P-QNACAHTHCGILYKDEGRLVEAA 136 (595)
Q Consensus 62 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~ 136 (595)
.....+.+.|.+.++.+|.+.++.+.+|.++.+.+ +.++++..++..++.+ | ++.++++.+|..+++.|+|++|.
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34567778888888888999999999999999988 6679999999999998 7 56899999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHH
Q 007634 137 ESYHKALSADPSYKPAAE 154 (595)
Q Consensus 137 ~~~~~~l~~~~~~~~~~~ 154 (595)
.+++++++..|++..+..
T Consensus 92 ~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhcCCCCHHHHH
Confidence 999999999999988743
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.64 E-value=3.5e-07 Score=69.96 Aligned_cols=78 Identities=13% Similarity=0.083 Sum_probs=67.3
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKD-------SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA 118 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (595)
.+++..+.+|..++..|+|..|+.+|+++++.. +..+.++..+|.++..+|++++|+..++++++++|++..+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 578889999999999999999999999998853 2456788899999999999999999999999999998888
Q ss_pred HHHHH
Q 007634 119 HTHCG 123 (595)
Q Consensus 119 ~~~la 123 (595)
..+++
T Consensus 83 ~~n~~ 87 (104)
T 2v5f_A 83 NGNLK 87 (104)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 77665
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.58 E-value=5.3e-07 Score=68.94 Aligned_cols=75 Identities=17% Similarity=0.200 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhh
Q 007634 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-------PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (595)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 440 (595)
+.-++.+|..++..|+|..|+.+|+++++.. +..+.++..+|.++.++|++++|+.+++++++++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3445566666666666666666666666542 234667777777777777777777777777777777776655
Q ss_pred hH
Q 007634 441 NR 442 (595)
Q Consensus 441 ~~ 442 (595)
|.
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.56 E-value=4.4e-07 Score=88.64 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAA--------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (595)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (595)
++.++|.+|..+|+|++|+.++++++++ .|+....+.+||.+|..+|++++|+.+|++|++
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3444555555555555555555555443 122233445555555555555555555555544
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.54 E-value=2.4e-07 Score=90.68 Aligned_cols=88 Identities=9% Similarity=0.006 Sum_probs=49.5
Q ss_pred HHhcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CCC---CHHHHHH
Q 007634 310 YGEMLKFDMAIVFYELAFHF-----NPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPN---FSQSLNN 373 (595)
Q Consensus 310 ~~~~~~~~~A~~~~~~~l~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~---~~~~~~~ 373 (595)
+..+|++++|+..+++++++ .|++ ...+.++|.+|..+|++++|+.++++++.+ .|+ ....+++
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 33455666666666666654 2222 345556666666666666666666666544 222 2345556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHh
Q 007634 374 LGVVYTVQGKMDAAAEMIEKAIAA 397 (595)
Q Consensus 374 la~~~~~~g~~~~A~~~~~~al~~ 397 (595)
+|.+|..+|++++|+.+|++++++
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH
Confidence 666666666666666666666554
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.53 E-value=2.7e-07 Score=90.07 Aligned_cols=99 Identities=13% Similarity=-0.016 Sum_probs=82.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CC---CCHHH
Q 007634 307 GVAYGEMLKFDMAIVFYELAFHF-----NPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSI-----KP---NFSQS 370 (595)
Q Consensus 307 a~~~~~~~~~~~A~~~~~~~l~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~---~~~~~ 370 (595)
.......|+|++|+..+++++++ .|++ ...+.++|.+|..+|+|++|+.++++++++ .| +....
T Consensus 305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 384 (433)
T 3qww_A 305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM 384 (433)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 34445578999999999999986 3444 567899999999999999999999999976 34 44568
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCcHHHH
Q 007634 371 LNNLGVVYTVQGKMDAAAEMIEKAIAA-----NPTYAEAY 405 (595)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 405 (595)
++++|.+|..+|++++|+.+|++++++ .|+++.+.
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999999999999998 45655544
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.47 E-value=1.2e-06 Score=85.79 Aligned_cols=105 Identities=11% Similarity=0.044 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHc-----CCC
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEK-----DSGNV---EAHIGKGICLQMQNMGRLAFDSFSEAVKL-----DPQ 114 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~ 114 (595)
.+..+.....+..+|+|++|+..++++++. .|+++ ..+..+|.+|..+|+|++|+.++++++.. .|+
T Consensus 287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~ 366 (429)
T 3qwp_A 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS 366 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence 345666677788999999999999999975 34554 67889999999999999999999999975 344
Q ss_pred c---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHH
Q 007634 115 N---ACAHTHCGILYKDEGRLVEAAESYHKALSA-----DPSYKPA 152 (595)
Q Consensus 115 ~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~ 152 (595)
+ ...++++|.+|..+|++++|+..+++++++ .|+++..
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 4 457899999999999999999999999874 6776655
No 222
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.28 E-value=0.00017 Score=72.19 Aligned_cols=158 Identities=10% Similarity=0.023 Sum_probs=130.9
Q ss_pred hhhhhhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHhhC-CCCHHHHHHHH
Q 007634 273 GTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLK---------FDMAIVFYELAFHFN-PHCAEACNNLG 341 (595)
Q Consensus 273 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~---------~~~A~~~~~~~l~~~-~~~~~~~~~la 341 (595)
-..+.+.|+.++|++.|++..+.. +-+..+|..+-.++...+. .++|.+.|++..... +.+...|..+.
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI 112 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA 112 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 355677899999999999998764 2356677777777765543 688999999988763 33688899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCH
Q 007634 342 VIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSI 418 (595)
Q Consensus 342 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~ 418 (595)
..+.+.|+.++|.++|++..+.. .-+...|..+-..|.+.|+.++|.+.|++..+. .|+ ...+..+-..+.+.|+.
T Consensus 113 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd-~~ty~~Li~~~~~~g~~ 191 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE-EPELAALLKVSMDTKNA 191 (501)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhhCCCH
Confidence 99999999999999999987753 235778889999999999999999999999875 444 77899999999999999
Q ss_pred HHHHHHHHHHHhc
Q 007634 419 SLAIDAYEQCLKI 431 (595)
Q Consensus 419 ~~A~~~~~~al~~ 431 (595)
++|.+.+++..+.
T Consensus 192 d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 192 DKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.24 E-value=7.1e-06 Score=63.13 Aligned_cols=91 Identities=12% Similarity=0.031 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHhC-C-CcHHHHHHHHHHHHHcCCHHHHHHH
Q 007634 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA---AAEMIEKAIAAN-P-TYAEAYNNLGVLYRDAGSISLAIDA 424 (595)
Q Consensus 350 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~ 424 (595)
...+...|.+.+..++....+.+++|+++....+..+ ++..++..+..+ | ..-+.++.||..+.++|+|++|+.+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3455566666666666677777777777777776655 777777777665 4 3457788888888888888888888
Q ss_pred HHHHHhcCCCChhhhh
Q 007634 425 YEQCLKIDPDSRNAGQ 440 (595)
Q Consensus 425 ~~~al~~~p~~~~~~~ 440 (595)
++..|++.|++..+..
T Consensus 97 ~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHCTTCHHHHH
T ss_pred HHHHHHhCCCCHHHHH
Confidence 8888888888776643
No 224
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.24 E-value=0.00038 Score=69.68 Aligned_cols=160 Identities=11% Similarity=0.001 Sum_probs=98.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhC---------CHHHHHHHHHHHHHcCC-CcHHHHHH
Q 007634 53 SYANILRSRNKFVDALALYEIVLEKD-SGNVEAHIGKGICLQMQN---------MGRLAFDSFSEAVKLDP-QNACAHTH 121 (595)
Q Consensus 53 ~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~p-~~~~~~~~ 121 (595)
..-..+.+.|++++|+.+|+++.+.. +-+...+..+-.++...+ ..++|.+.|++..+..- -+..++..
T Consensus 31 ~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~ 110 (501)
T 4g26_A 31 QKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTN 110 (501)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34466677888888888888887652 224445555544444333 35667777777665432 24556666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC-CHHHHHHHH
Q 007634 122 CGILYKDEGRLVEAAESYHKALSAD--PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLG 198 (595)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la 198 (595)
+...|.+.|++++|..+|++..+.. |+ .. .|..+-..+...|+.++|.+.|+++.+..-. +...|..+.
T Consensus 111 lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~-------tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li 182 (501)
T 4g26_A 111 GARLAVAKDDPEMAFDMVKQMKAFGIQPR-LR-------SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALL 182 (501)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCc-cc-------eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 7777777777777777777766542 32 12 2445555566667777777777766654221 455666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 007634 199 VVYSELMQYDTALGCYEKAALE 220 (595)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~ 220 (595)
..+.+.|+.++|.+++++..+.
T Consensus 183 ~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 183 KVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHh
Confidence 6777777777777777766543
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.16 E-value=3.6e-05 Score=59.23 Aligned_cols=95 Identities=11% Similarity=0.008 Sum_probs=82.4
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHH---HHHHHHHHHHcC-C-CcHHHHHHHHHHHHHcCCHHH
Q 007634 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL---AFDSFSEAVKLD-P-QNACAHTHCGILYKDEGRLVE 134 (595)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~ 134 (595)
.......+...|.+.+..++.+.++.+.+|+++.+..+... ++..++..++.+ | ..-+.++.+|..+++.|+|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 34456677778888888888899999999999999887766 999999999887 5 567899999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHH
Q 007634 135 AAESYHKALSADPSYKPAAE 154 (595)
Q Consensus 135 A~~~~~~~l~~~~~~~~~~~ 154 (595)
|..+++.+++..|++..+..
T Consensus 93 A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999988744
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.99 E-value=0.00018 Score=56.42 Aligned_cols=115 Identities=12% Similarity=0.014 Sum_probs=80.0
Q ss_pred cCCCcHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 007634 111 LDPQNACAHTHCGILYKDEGRL------VEAAESYHKALSADPSY-KPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA 183 (595)
Q Consensus 111 ~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~~l~~~~~~-~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~ 183 (595)
..|++++.|..........|+. ++-++.|++++..-|.. ...+..++.+|...+.. ...++.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 4678888888888777777887 77788888888766542 23344455566666544 3447777777777777
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 007634 184 LKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226 (595)
Q Consensus 184 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 226 (595)
+......+.+|...|..-.++|+...|.+.+.+++...|...+
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 7776666777777777777777777777777777777776444
No 227
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.94 E-value=0.00023 Score=55.86 Aligned_cols=107 Identities=11% Similarity=0.074 Sum_probs=58.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHccCCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007634 330 NPHCAEACNNLGVIYKDRDNL------DKAVECYQMALSIKPNF--------SQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (595)
Q Consensus 330 ~~~~~~~~~~la~~~~~~~~~------~~A~~~~~~al~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (595)
.|++++.|........+.|+. ++-++.|++|+..-|.. ...|...|.. ...++.++|.+.|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 344444444444444444444 44445555554443321 2244444433 34466666666666666
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 007634 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (595)
Q Consensus 396 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (595)
......+.+|...|..-.++|+...|.+.+.+++.+.|...+
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 665555666666666666666666666666666666665543
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.77 E-value=0.00017 Score=58.02 Aligned_cols=61 Identities=13% Similarity=0.037 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 007634 303 MYNLGVAYGEMLKFDMAIVFYELAFHFN---PHC------AEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (595)
Q Consensus 303 ~~~la~~~~~~~~~~~A~~~~~~~l~~~---~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 363 (595)
++.-...+...|.|+.|+.....++... |+. .+++..+|.+++..++|..|...|+++++.
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3444445555666666666655554432 221 235566666666666666666666666544
No 229
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.76 E-value=0.00024 Score=57.25 Aligned_cols=93 Identities=10% Similarity=0.026 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC------C-
Q 007634 50 DALSYANILRSRNKFVDALALYEIVLEKDSGN---------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLD------P- 113 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p- 113 (595)
.++.....++..|.|+.|+-+...++....++ .+++..+|.+++..++|..|...|+++++.. +
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 47888999999999999999999877653222 2488999999999999999999999987641 1
Q ss_pred ------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 114 ------------------QNACAHTHCGILYKDEGRLVEAAESYHKA 142 (595)
Q Consensus 114 ------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 142 (595)
.+.+..+.++.|+...+++.+|+..++.+
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 11368899999999999999999998865
No 230
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.61 E-value=0.0012 Score=51.57 Aligned_cols=76 Identities=12% Similarity=0.089 Sum_probs=65.3
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhh
Q 007634 365 PNFSQSLNNLGVVYTVQGKM---DAAAEMIEKAIAANPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (595)
Q Consensus 365 ~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 440 (595)
.-...+.+++|+++....+. .+++..++..+...|. .-+.++.||..+.++|+|.+|+.+.+..|+..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45678899999999888754 4788999999988884 5689999999999999999999999999999999987653
No 231
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.51 E-value=0.00065 Score=52.32 Aligned_cols=74 Identities=12% Similarity=0.092 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhh
Q 007634 367 FSQSLNNLGVVYTVQGKM---DAAAEMIEKAIAANPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (595)
Q Consensus 367 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 440 (595)
.+.+.+++|+++.+..+. .+++..++..+..+|. .-+.++.||..+.++|+|++|+.+.+.++++.|++..+..
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 467888888888877654 4688888888888874 4688888999999999999999999999999998887653
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.49 E-value=0.0062 Score=47.60 Aligned_cols=76 Identities=11% Similarity=0.022 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007634 79 SGNVEAHIGKGICLQMQNMG---RLAFDSFSEAVKLDPQ-NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (595)
Q Consensus 79 p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 154 (595)
.-++++.+.+|+++....+. .+++.+++..++..|. .-+.++.+|..+++.|+|++|..+.+.+++..|++.++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45778999999999988765 4799999999998884 5678999999999999999999999999999999987643
No 233
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.37 E-value=0.0021 Score=49.47 Aligned_cols=77 Identities=10% Similarity=0.003 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007634 81 NVEAHIGKGICLQMQNMG---RLAFDSFSEAVKLDPQ-NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (595)
Q Consensus 81 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 156 (595)
++.+.+.+|+++.+..+. .+++..++..++.+|. .-+.++.+|..+.+.|+|++|..+.+.+++..|++..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 567778888888777654 4678888888877774 466788888888888888888888888888888887765544
Q ss_pred H
Q 007634 157 A 157 (595)
Q Consensus 157 a 157 (595)
.
T Consensus 119 ~ 119 (134)
T 3o48_A 119 S 119 (134)
T ss_dssp H
T ss_pred H
Confidence 3
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.17 Score=52.56 Aligned_cols=59 Identities=15% Similarity=0.118 Sum_probs=34.3
Q ss_pred HHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217 (595)
Q Consensus 159 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 217 (595)
++...+..+...|+++-|+.+.++++...|.....|+.|+.+|..+|+|+.|+-.++.+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34445555555566666666666666666666666666666666666666665554443
No 235
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.23 E-value=0.23 Score=50.54 Aligned_cols=144 Identities=8% Similarity=-0.084 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH--
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL-- 125 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-- 125 (595)
.+..+..|...++.|++..+..+...+ ..+|- ..+..........++. .-..+...++.+|+.+..-......
T Consensus 6 ~~~~~~~a~~a~~~~~~~~~~~l~~~l-~~~pL--~~yl~y~~l~~~l~~~--~~~ev~~Fl~~~~~~p~~~~Lr~~~l~ 80 (618)
T 1qsa_A 6 QRSRYAQIKQAWDNRQMDVVEQMMPGL-KDYPL--YPYLEYRQITDDLMNQ--PAVTVTNFVRANPTLPPARTLQSRFVN 80 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHSGGG-TTSTT--HHHHHHHHHHHTGGGC--CHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhh-cCCCc--HHHHHHHHHHhCcccC--CHHHHHHHHHHCCCChhHHHHHHHHHH
Confidence 456788888999999998777765542 33443 2333332222222211 1224555567788887654443332
Q ss_pred -HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 007634 126 -YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (595)
Q Consensus 126 -~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (595)
+.+.+++..-+.++.. .|.+... -..........|+..+|.....++.......+.....+-..+...
T Consensus 81 ~l~~~~~w~~~l~~~~~----~p~~~~~-------~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 81 ELARREDWRGLLAFSPE----KPGTTEA-------QCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHTTCHHHHHHHCCS----CCSSHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHT
T ss_pred HHHhCCCHHHHHHhccC----CCCCHHH-------HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHC
Confidence 3345666655554443 2555544 223334455667777777777666655555555555555555544
Q ss_pred CCH
Q 007634 205 MQY 207 (595)
Q Consensus 205 g~~ 207 (595)
|..
T Consensus 150 g~l 152 (618)
T 1qsa_A 150 GKQ 152 (618)
T ss_dssp TCS
T ss_pred CCC
Confidence 443
No 236
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.11 E-value=0.3 Score=49.69 Aligned_cols=338 Identities=10% Similarity=-0.104 Sum_probs=170.1
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007634 70 LYEIVLEKDSGNVEAHIGKGICL---QMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD 146 (595)
Q Consensus 70 ~~~~~l~~~p~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 146 (595)
-+...+...|+.+..-......+ ...+++..-+.++.. .|.+....+.........|+..+|....+++....
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence 44455677888876544444333 345667666554443 47888888888889999999988888888877665
Q ss_pred CCCHHHHHHHHHHHH-----------HhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Q 007634 147 PSYKPAAECLAIVLT-----------DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE-LMQYDTALGCY 214 (595)
Q Consensus 147 ~~~~~~~~~~a~~~~-----------~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~ 214 (595)
...+.....+...+. .........|+...|......+ .++ .. .++..... ..+........
T Consensus 133 ~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l---~~~-~~---~~a~~~~al~~~p~~~~~~~ 205 (618)
T 1qsa_A 133 KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQM---PAD-YQ---TIASAIISLANNPNTVLTFA 205 (618)
T ss_dssp SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTC---CGG-GH---HHHHHHHHHHHCGGGHHHHH
T ss_pred CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhC---CHH-HH---HHHHHHHHHHhChHhHHHHH
Confidence 444443222211111 1112233334433333322211 011 00 00000000 00111111100
Q ss_pred HHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHH
Q 007634 215 EKAALERPMYA-EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293 (595)
Q Consensus 215 ~~al~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 293 (595)
. ...+... .....++.......+.+.|...+........-+.... ......++......+...++...+.+..
T Consensus 206 ~---~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~---~~~~~~ia~~~~~~~~~~~~~~~~~~~~ 279 (618)
T 1qsa_A 206 R---TTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQI---QELRDIVAWRLMGNDVTDEQAKWRDDAI 279 (618)
T ss_dssp H---HSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHH---HHHHHHHHHTSCSTTCCHHHHHHHHHHH
T ss_pred h---ccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHH---HHHHHHHHHHHHHcCCChHHHHHHHhcc
Confidence 0 0011111 1122233333344466777777766544332222211 1122223333333443445555555544
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC---------
Q 007634 294 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--------- 364 (595)
Q Consensus 294 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------- 364 (595)
....++ .....++...+..|+++.|...+..+-..........+-+|..+...|+.++|..+|+++....
T Consensus 280 ~~~~~~-~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~ 358 (618)
T 1qsa_A 280 MRSQST-SLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQ 358 (618)
T ss_dssp HTCCCH-HHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHH
T ss_pred ccCCCh-HHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHH
Confidence 433322 2222333334456777777777766554333456667777777777777777777777665421
Q ss_pred --------------CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 365 --------------PNF-----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425 (595)
Q Consensus 365 --------------~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 425 (595)
+.. .......+..+...|....|...+...+... +..-...++.+....|.+..++...
T Consensus 359 ~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 359 RIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 000 0122345666777888888887777766542 2444556777778888888777655
Q ss_pred HH
Q 007634 426 EQ 427 (595)
Q Consensus 426 ~~ 427 (595)
.+
T Consensus 437 ~~ 438 (618)
T 1qsa_A 437 IA 438 (618)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 237
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.10 E-value=0.15 Score=54.73 Aligned_cols=75 Identities=11% Similarity=-0.004 Sum_probs=52.8
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 007634 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (595)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 240 (595)
......+...|.+++|++..+ ++... .......|++++|.+..+. .++...|..+|..+.+.++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCC
Confidence 334455566778887776542 22222 2345678999998887543 3567889999999999999
Q ss_pred HHHHHHHHHHH
Q 007634 241 LESAIACYERC 251 (595)
Q Consensus 241 ~~~A~~~~~~a 251 (595)
++.|+.+|.++
T Consensus 697 ~~~A~~~y~~~ 707 (814)
T 3mkq_A 697 FKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999988875
No 238
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.08 E-value=0.2 Score=47.56 Aligned_cols=100 Identities=16% Similarity=0.085 Sum_probs=72.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHH
Q 007634 195 YNLGVVYSELMQYDTALGCYEKAALERPM------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268 (595)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 268 (595)
..+|.+|+..|+|.+|.+.+.++.+.-.. -.+++..-..+|...+++.++...+.++......-.......+.+
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 47899999999999999999998774221 246677788899999999999999999875531100011234555
Q ss_pred HHHhhhhhh-hcCCHHHHHHHHHHHHh
Q 007634 269 LTDLGTKVK-LEGDINQGVAYYKKALY 294 (595)
Q Consensus 269 ~~~l~~~~~-~~~~~~~A~~~~~~~~~ 294 (595)
...-|..+. ..++|.+|...|-+++.
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 666666777 67888888777777654
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.1 Score=51.04 Aligned_cols=205 Identities=13% Similarity=-0.050 Sum_probs=125.8
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEK------DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (595)
..+..+..+..+ ..|++.+|++.+..+-+. .+....+...+...+...|+++...+.+.-..+.......+-.
T Consensus 16 ~~~~~~~~~~~l-~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~ 94 (445)
T 4b4t_P 16 ILKEEFPKIDSL-AQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQ 94 (445)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHH
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHH
Confidence 445555666665 348899999887655442 2334677888889999999999888877665554443333322
Q ss_pred HHHHHH---H-HcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC--C-
Q 007634 121 HCGILY---K-DEGRLVEAAESYHKALSA----DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--H- 189 (595)
Q Consensus 121 ~la~~~---~-~~g~~~~A~~~~~~~l~~----~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~--~- 189 (595)
.+.... . .....+. ......+.. ..+-...-...+.+...++.++...|++.+|...+.......- .
T Consensus 95 ~~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~ 172 (445)
T 4b4t_P 95 YMIQKVMEYLKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSME 172 (445)
T ss_dssp HHHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSC
T ss_pred HHHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhccc
Confidence 222211 1 1222111 111122221 1111111122466678899999999999999999988764311 1
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007634 190 ---YAPAYYNLGVVYSELMQYDTALGCYEKAAL---ERPMY----AEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (595)
Q Consensus 190 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 254 (595)
-.+.+.....++...+++.+|...+.++.. ..+.. ...+...|.++...++|.+|-.+|..++..
T Consensus 173 ~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 173 MSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 256788889999999999999999998742 22333 345677899999999999999999988754
No 240
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.94 E-value=0.093 Score=56.36 Aligned_cols=44 Identities=14% Similarity=0.146 Sum_probs=27.6
Q ss_pred HhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217 (595)
Q Consensus 169 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 217 (595)
..|++++|.+..+ ..++...|..+|..+.+.++++.|+.+|.++
T Consensus 664 ~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 664 KVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3466666666542 2345666777777777777777777777664
No 241
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.85 E-value=0.061 Score=51.13 Aligned_cols=94 Identities=14% Similarity=-0.002 Sum_probs=69.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC---CCC----HHH
Q 007634 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPH------CAEACNNLGVIYKDRDNLDKAVECYQMALSIK---PNF----SQS 370 (595)
Q Consensus 304 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~----~~~ 370 (595)
..+|.+|+..|+|.+|.+.+.+..+.-.. ..+++.....+|...+++.++...+.++.... +.+ +..
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 47888999999999998888888764211 14566777888888899999988888886542 122 334
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHh
Q 007634 371 LNNLGVVYT-VQGKMDAAAEMIEKAIAA 397 (595)
Q Consensus 371 ~~~la~~~~-~~g~~~~A~~~~~~al~~ 397 (595)
...-|..+. ..++|.+|..+|-++++.
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 555677778 788999998888888754
No 242
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.61 E-value=0.2 Score=40.12 Aligned_cols=157 Identities=17% Similarity=0.183 Sum_probs=82.2
Q ss_pred hhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--h---------------CCCCHH
Q 007634 273 GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH--F---------------NPHCAE 335 (595)
Q Consensus 273 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~--~---------------~~~~~~ 335 (595)
+....-.|.+..++-.+.+ -+...+.+..+.|+...++|.+|+..++..+. . +|.+.+
T Consensus 40 ~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkE 114 (242)
T 3kae_A 40 SIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEE 114 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHH
T ss_pred hhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHH
Confidence 3334445666655554432 23455566666677777777777777777762 1 222322
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHH--H--------HhcCC--HH-----HHH--------H
Q 007634 336 -ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV--Y--------TVQGK--MD-----AAA--------E 389 (595)
Q Consensus 336 -~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~--~--------~~~g~--~~-----~A~--------~ 389 (595)
.+..+|.++.+.|+.++|+.++.......|-.+.+-..+-.- . ...|+ .+ ... .
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~ 194 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPS 194 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHH
Confidence 345566777777777777777777776666443322111000 0 00000 00 000 1
Q ss_pred HHHHHHHhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 390 MIEKAIAANPTYAE-AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 390 ~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
..++..+.-|.... .....+.-|..+|-.++...+|......+|.
T Consensus 195 ~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 195 LVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 11111122233221 2234566778888888888888888888885
No 243
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.15 Score=41.86 Aligned_cols=108 Identities=11% Similarity=0.010 Sum_probs=68.2
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (595)
+.+..|.+| ++.|+++.|.++.+++ ++...|..+|...+..|+++-|..+|.++- + +..+..+|
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-----D---~~~L~~Ly 70 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH-----S---FDKLSFLY 70 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-----C---HHHHHHHH
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-----C---HHHHHHHH
Confidence 455555555 6789999999887765 567889999999999999999988888752 2 23344456
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHH
Q 007634 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182 (595)
Q Consensus 127 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~ 182 (595)
...|+.+.-...-+.+..... +.....++...|+++++++.|.+
T Consensus 71 ~~tg~~e~L~kla~iA~~~g~------------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIAQTRED------------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHCcc------------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 667776554444443333221 12222334455777776666644
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.18 Score=49.29 Aligned_cols=191 Identities=12% Similarity=-0.013 Sum_probs=122.4
Q ss_pred CChHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHcCC
Q 007634 171 GNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY----KNRGD 240 (595)
Q Consensus 171 ~~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~----~~~~~ 240 (595)
|++++|++.+....+. .+....+...+..++...|+++...+.+.-..+.......+...+.... .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 5677887776444332 2335778888899999999999988877665554444333322222211 11222
Q ss_pred HHHHHHHHHHHHhc----CCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHH
Q 007634 241 LESAIACYERCLAV----SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH------YADAMYNLGVAY 310 (595)
Q Consensus 241 ~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~ 310 (595)
.+... ....+.. ..+-...-...+.+...++.++...|++.+|...+.......-. -.+.+.....++
T Consensus 110 ~d~~~--~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 110 LDLNT--RISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp THHHH--HHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred hhHHH--HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22111 1122221 11111111124666778888999999999999999887643211 145778888999
Q ss_pred HhcCCHHHHHHHHHHHHhh---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 007634 311 GEMLKFDMAIVFYELAFHF---NPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (595)
Q Consensus 311 ~~~~~~~~A~~~~~~~l~~---~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 363 (595)
...+++.+|...++++... .+.. ...+...|.++...++|.+|-.+|..++..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 9999999999999987431 2333 346677889999999999999999888764
No 245
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.53 E-value=0.23 Score=39.79 Aligned_cols=190 Identities=18% Similarity=0.153 Sum_probs=124.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHH
Q 007634 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134 (595)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (595)
....++-.+|+.++-+-.-. .|..++....++..++-.|++..++-.+.+ -+...+.+..+.||...+++..
T Consensus 9 I~Ks~kY~dYdt~~fLsa~L---~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkk 80 (242)
T 3kae_A 9 ICKSIRYRDYETAIFLAACL---LPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKK 80 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHHH---C----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhcccccHHHHHHHHH---ccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHH
Confidence 34456677888876543332 455557788889999999999998877653 3567788888999999999999
Q ss_pred HHHHHHHHHh--c--C-------------CCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 007634 135 AAESYHKALS--A--D-------------PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197 (595)
Q Consensus 135 A~~~~~~~l~--~--~-------------~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 197 (595)
|+..+++.++ . + |.+.+. .+..+|.++...|+.++|+.++.......|-.+.+-..+
T Consensus 81 A~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEf------Fy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnli 154 (242)
T 3kae_A 81 AIKSLESILEGKVERDPDVDARIQEMFVDPGDEEF------FESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLL 154 (242)
T ss_dssp HHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHhcccccCcccccccceeeeccchHHH------HHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHH
Confidence 9999999983 2 2 223222 356788899999999999999999888876543332111
Q ss_pred HH-----------HHH------HcCCHHHHH--------HHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q 007634 198 GV-----------VYS------ELMQYDTAL--------GCYEKAALERPMYAE-AYCNMGVIYKNRGDLESAIACYERC 251 (595)
Q Consensus 198 a~-----------~~~------~~g~~~~A~--------~~~~~al~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~a 251 (595)
-. +.. +...+.... ...++-...-|.... .....+.-++..|-.++...+|...
T Consensus 155 yeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~l 234 (242)
T 3kae_A 155 LENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELV 234 (242)
T ss_dssp HTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHH
Confidence 00 000 000011111 122222233454332 3445678899999999999999999
Q ss_pred HhcCCCc
Q 007634 252 LAVSPNF 258 (595)
Q Consensus 252 l~~~~~~ 258 (595)
-+.+|..
T Consensus 235 R~kDP~F 241 (242)
T 3kae_A 235 RRKDPMF 241 (242)
T ss_dssp HHHSTTT
T ss_pred HhcCCCc
Confidence 9888863
No 246
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.41 E-value=1.3 Score=47.07 Aligned_cols=188 Identities=11% Similarity=0.047 Sum_probs=98.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CcH-HHHhhHHHHHHH
Q 007634 201 YSELMQYDTALGCYEKAALER-PMY----AEAYCNMGVIYKNRGDLESAIACYERCLAVSP---NFE-IAKNNMAIALTD 271 (595)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~-~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~-~~~~~~~~~~~~ 271 (595)
....|+.++++..+.+.+... .++ ..+.+.+|.++...+ .+++.++...+.... ... ......+ +...
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~g-AaLG 460 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHG-ASLG 460 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHH-HHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHH-HHHH
Confidence 345677778888887766522 122 345666676666555 468888887775432 110 1112222 3446
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 007634 272 LGTKVKLEGDINQGVAYYKKALYYNWHY--ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 349 (595)
Q Consensus 272 l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 349 (595)
+|.++.-.++ +++.+.+...+..+... ..+-+.+|.++.-.|+-+.....+..+.+...+...-...+|..+...|+
T Consensus 461 LGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 461 IGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 6766665555 45666666666533221 13455677777778877666666665554332222222334444445566
Q ss_pred HHHHHHHHHHHHccCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHH
Q 007634 350 LDKAVECYQMALSIKPNFSQ----SLNNLGVVYTVQGKMDAAAEMIEKA 394 (595)
Q Consensus 350 ~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~a 394 (595)
.+.+....+...... ++. +...+|..|...|+...-...+..+
T Consensus 540 ~e~~~~li~~L~~~~--dp~vRygaa~alglAyaGTGn~~aIq~LL~~~ 586 (963)
T 4ady_A 540 QELADDLITKMLASD--ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVA 586 (963)
T ss_dssp GGGGHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 665555554443321 222 2233455555666644333344433
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.049 Score=56.45 Aligned_cols=125 Identities=11% Similarity=0.064 Sum_probs=86.0
Q ss_pred hCC-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHH--Hc-CCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHH
Q 007634 95 QNM-GRLAFDSFSEAVKLDPQNACAHTHCGILYK--DE-GRLVEAAESYHKALSA--------DPSYKPAAECLAIVLTD 162 (595)
Q Consensus 95 ~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~-g~~~~A~~~~~~~l~~--------~~~~~~~~~~~a~~~~~ 162 (595)
.++ ++.|+..+++..+.+|.....+ ..+.+.. .. .+--+|+..+.+.++. .+.+...
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~---------- 329 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS---------- 329 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH----------
T ss_pred cccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc----------
Confidence 344 5789999999998888654322 2222222 11 2334566666665531 1221111
Q ss_pred hHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 007634 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242 (595)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 242 (595)
... .|.....+...+..+...|+++-|+++.++++...|.....|+.|+.+|..+|+|+
T Consensus 330 --------------~~~-------~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e 388 (754)
T 4gns_B 330 --------------ARL-------MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYE 388 (754)
T ss_dssp --------------HHH-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHH
T ss_pred --------------ccc-------cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHH
Confidence 000 01113455667888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 007634 243 SAIACYERC 251 (595)
Q Consensus 243 ~A~~~~~~a 251 (595)
.|+-.++.+
T Consensus 389 ~ALLtLNSc 397 (754)
T 4gns_B 389 KALFAINSM 397 (754)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 999988876
No 248
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.17 E-value=0.078 Score=46.65 Aligned_cols=62 Identities=15% Similarity=0.035 Sum_probs=57.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH
Q 007634 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA 116 (595)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (595)
...+++.|+.++|++.+...++.+|.++.....+...++-.|+++.|.+.++.+.+++|+..
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 34578899999999999999999999999999999999999999999999999999988753
No 249
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.27 Score=40.37 Aligned_cols=108 Identities=8% Similarity=-0.047 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007634 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (595)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~ 160 (595)
+++..+.++ ...|+++.|.+..+.. ++...|..+|......|+++-|..+|+++-. +
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------------~ 63 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------------F 63 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------------H
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------------H
Confidence 445555554 4678999998887765 5678899999999999999999999887632 2
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007634 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216 (595)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 216 (595)
..+..+|...|+.+.-...-+.+..... +.....+++.+|+++++++.|.+
T Consensus 64 ~~L~~Ly~~tg~~e~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 64 DKLSFLYLVTGDVNKLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 2333344455666554444333332221 12223456677777777777654
No 250
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.94 E-value=0.18 Score=44.41 Aligned_cols=61 Identities=21% Similarity=0.255 Sum_probs=52.7
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 007634 91 CLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (595)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 151 (595)
.+++.|+.++|+......++.+|.+......+..+++-.|+++.|...++.+.+++|+...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 4567788899999999999999999999989999999999999999999999998887544
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.66 E-value=0.2 Score=48.12 Aligned_cols=96 Identities=15% Similarity=0.054 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----------------------HHHHHHHHHHHHHhCCHHHHHHHHH
Q 007634 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGN----------------------VEAHIGKGICLQMQNMGRLAFDSFS 106 (595)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~ 106 (595)
+.+...|......|+.+.|...+++++...... ..+...++..+...|++.+|+..+.
T Consensus 116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~ 195 (388)
T 2ff4_A 116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 195 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 345556666677899999999999999864221 0133346677788899999999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS 144 (595)
Q Consensus 107 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 144 (595)
.++..+|-+-.++..+..++...|+..+|+..|+++-.
T Consensus 196 ~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 196 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999988999999999999999999998887644
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.50 E-value=0.22 Score=47.72 Aligned_cols=112 Identities=14% Similarity=0.030 Sum_probs=75.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHccCCCCHHHHHHHHHHHHhcCCH
Q 007634 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA-VECYQMALSIKPNFSQSLNNLGVVYTVQGKM 384 (595)
Q Consensus 306 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 384 (595)
.|......|+.+.|...+.+++.+.....-.- .. ...+-.+ ...+++. ...+...++..+...|++
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~--~~-----~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~g~~ 187 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDD--LR-----DFQFVEPFATALVED------KVLAHTAKAEAEIACGRA 187 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--GT-----TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCC--CC-----chhHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCH
Confidence 34444456777788888888877643221000 00 0111111 1111111 123455677888899999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007634 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (595)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (595)
.+|+..+..++..+|-+..++..+-.++...|+..+|+..|+++.+
T Consensus 188 ~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 188 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988754
No 253
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.91 E-value=0.049 Score=53.20 Aligned_cols=128 Identities=13% Similarity=0.065 Sum_probs=58.9
Q ss_pred HHHhcCCHHHHHHHHHHHHh-----------hCCCCHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHc-----
Q 007634 309 AYGEMLKFDMAIVFYELAFH-----------FNPHCAEACNNLGVIYKDRDNLDKAV----------ECYQMALS----- 362 (595)
Q Consensus 309 ~~~~~~~~~~A~~~~~~~l~-----------~~~~~~~~~~~la~~~~~~~~~~~A~----------~~~~~al~----- 362 (595)
.+...+++++|..+-...+. +++-.+.+|+..+.++...|+..... ..+-.+++
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 34455666666665554431 13334667777777777777655422 12222222
Q ss_pred cCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 363 IKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 363 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
.++. ....+..+-..|...+.+++|..+..++. .|.. ...++.+|.++.-+++|.+|.+++..|+...|.
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 1222 24567778888999999999999999884 4422 356778899999999999999999999998887
Q ss_pred Chhh
Q 007634 435 SRNA 438 (595)
Q Consensus 435 ~~~~ 438 (595)
+..+
T Consensus 303 ~~~a 306 (523)
T 4b4t_S 303 NSKS 306 (523)
T ss_dssp SSSC
T ss_pred chhh
Confidence 6544
No 254
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.89 E-value=0.16 Score=50.14 Aligned_cols=80 Identities=16% Similarity=0.216 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh
Q 007634 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (595)
Q Consensus 301 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 380 (595)
..+..+|.+......++.|..+|.+|..+.|++...++.+|.+....|+.-+|+-+|-+++......+.+..++..++..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 47788999999999999999999999999999999999999999999999999999999999877788899998887754
No 255
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.87 E-value=0.049 Score=53.17 Aligned_cols=133 Identities=11% Similarity=0.033 Sum_probs=52.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHH-----------cCCCCHHHHHHHHHHHHHhCCHHHHH----------HHHHHHHHc--
Q 007634 55 ANILRSRNKFVDALALYEIVLE-----------KDSGNVEAHIGKGICLQMQNMGRLAF----------DSFSEAVKL-- 111 (595)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~-----------~~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~~-- 111 (595)
-..++..++|++|.++-..++. .++-.+..|+..+.++...|+..... ..+..+++.
T Consensus 143 ~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~ 222 (523)
T 4b4t_S 143 QLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIAS 222 (523)
T ss_dssp ------------------------------------------------------------CHHHHHHHHTHHHHHHHHCC
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Confidence 3456778888888887766541 13445567777777777777665432 223233322
Q ss_pred ---CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC
Q 007634 112 ---DPQ-NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187 (595)
Q Consensus 112 ---~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 187 (595)
++. ....+..+-..|...+.+++|..+..++. .|.........+..++.+|.++..+++|.+|.+++..++...
T Consensus 223 lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 223 LKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 222 23456667778888888888888888774 454322233345556677777777777777777777777665
Q ss_pred CC
Q 007634 188 PH 189 (595)
Q Consensus 188 ~~ 189 (595)
|.
T Consensus 301 p~ 302 (523)
T 4b4t_S 301 PH 302 (523)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 256
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.68 E-value=0.22 Score=49.03 Aligned_cols=86 Identities=15% Similarity=0.142 Sum_probs=77.5
Q ss_pred HHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 007634 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 340 (595)
Q Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 340 (595)
.......++..+|++..-...+..|..+|.+|..+.|++...+..+|.+....|+.-+|+-+|.+++......+.+..++
T Consensus 147 ~~~~~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL 226 (497)
T 1ya0_A 147 CSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNL 226 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHH
Confidence 44455678889999999999999999999999999999999999999999999999999999999998877789999998
Q ss_pred HHHHHH
Q 007634 341 GVIYKD 346 (595)
Q Consensus 341 a~~~~~ 346 (595)
...+.+
T Consensus 227 ~~~f~~ 232 (497)
T 1ya0_A 227 QKALSK 232 (497)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887754
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.93 E-value=0.29 Score=47.69 Aligned_cols=102 Identities=12% Similarity=-0.090 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007634 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDP---QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159 (595)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~ 159 (595)
.++..+|..+...|++++|.+.|.++..... ...+.+.....++...+++..+...+.++........+ +.....+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d-~~~~~~l 210 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGD-WERRNRY 210 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCC-THHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCC-HHHHHHH
Confidence 3556666666666666666666666555422 12345555556666666666666666665433211110 1112222
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHh
Q 007634 160 LTDLGTSLKLAGNTQDGIQKYYEALK 185 (595)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~ 185 (595)
....|..+...++|..|...|..++.
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 33334444444555555554444433
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.69 E-value=0.32 Score=47.39 Aligned_cols=105 Identities=13% Similarity=-0.005 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH
Q 007634 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERP---MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (595)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 266 (595)
...++..+|..|...|++++|.+.|.++..... .-.+.+.....++...+++..+..++.++.......+. +....
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d-~~~~~ 208 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGD-WERRN 208 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCC-THHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCC-HHHHH
Confidence 455788899999999999999999999877533 34678888888999999999999999988654322110 11223
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHhh
Q 007634 267 IALTDLGTKVKLEGDINQGVAYYKKALYY 295 (595)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 295 (595)
......|..+...++|.+|...|-.++..
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 33334455555566676666666655543
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.39 E-value=4.8 Score=44.82 Aligned_cols=146 Identities=12% Similarity=-0.032 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 007634 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163 (595)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l 163 (595)
....+...+...+.++-+.+ .+...|.++...+.+|.++...|++++|..+|+++-..-.......
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~---------- 879 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF---------- 879 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSC----------
T ss_pred hHHHHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhh----------
Confidence 34455666777888876654 3456677888889999999999999999999998743211110000
Q ss_pred HHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHc
Q 007634 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM-YA----EAYCNMGVIYKNR 238 (595)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~----~~~~~la~~~~~~ 238 (595)
..... ..............+..|..+..++.+.+.++.+++..+.+++..+. +. ..|..+-..+...
T Consensus 880 -------~~~~~-~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l 951 (1139)
T 4fhn_B 880 -------AVLRE-FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 951 (1139)
T ss_dssp -------SSHHH-HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred -------hhhcc-cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhh
Confidence 00000 00000001111223445566666777777777777777777766432 22 2455666667777
Q ss_pred CCHHHHHHHHHHH
Q 007634 239 GDLESAIACYERC 251 (595)
Q Consensus 239 ~~~~~A~~~~~~a 251 (595)
|+|++|...+...
T Consensus 952 ~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 952 GKFDAAHVALMVL 964 (1139)
T ss_dssp CCSGGGGHHHHHH
T ss_pred CCHHHHHHHHHhC
Confidence 8888877766544
No 260
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=93.33 E-value=1.1 Score=47.77 Aligned_cols=99 Identities=6% Similarity=-0.102 Sum_probs=77.3
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHH
Q 007634 266 AIALTDLGTKVKLEGDINQGVAYYKKALYY----NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNL 340 (595)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~l 340 (595)
-..|..+-..+.+.|+.++|...+.+..+. ..-+..+|..+...+.+.|+.++|.++|++..+.. .-+...|..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 446777778888899999999998765432 33467888889999999999999999999888753 3457788888
Q ss_pred HHHHHHcCCH-HHHHHHHHHHHccC
Q 007634 341 GVIYKDRDNL-DKAVECYQMALSIK 364 (595)
Q Consensus 341 a~~~~~~~~~-~~A~~~~~~al~~~ 364 (595)
-.++.+.|+. ++|.+++++..+..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 8888888874 78888888887764
No 261
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=93.27 E-value=1.1 Score=47.70 Aligned_cols=98 Identities=7% Similarity=-0.077 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-CCCHHHHHHH
Q 007634 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHF----NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNL 374 (595)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l 374 (595)
...+..+-..+.+.|+.++|..++....+. ..-+...|+.+...|.+.|+.++|.+.|++..+.. .-+...|..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 346788888899999999999988765432 34457888888888999999999999998887653 2346677777
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHHh
Q 007634 375 GVVYTVQGKM-DAAAEMIEKAIAA 397 (595)
Q Consensus 375 a~~~~~~g~~-~~A~~~~~~al~~ 397 (595)
-.++.+.|+. ++|.+.+++..+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc
Confidence 7788888874 6788888888775
No 262
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.12 E-value=3.1 Score=46.30 Aligned_cols=148 Identities=9% Similarity=-0.019 Sum_probs=93.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--------------------
Q 007634 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD-------------------- 112 (595)
Q Consensus 53 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------------- 112 (595)
.+...+...+.++-+.. .+...|.++...+.+|.++...|++++|..+|+++..--
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 44556677777766654 344567788888999999999999999999998874211
Q ss_pred ---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC
Q 007634 113 ---PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (595)
Q Consensus 113 ---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 189 (595)
...+..|..+..++.+.+.++.+++..+.+++..+.+.+.. ...+|..+-..+...|+|++|...+...-. ...
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~--~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd-~~~ 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDL--SIAITHETLKTACAAGKFDAAHVALMVLST-TPL 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHH--HHHHHHHHHHHHHHHCCSGGGGHHHHHHHH-SSS
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhh--HHHHHHHHHHHHHhhCCHHHHHHHHHhCCC-HHH
Confidence 01124456666777778888888888888877654332211 122455566666777888877766644321 122
Q ss_pred CHHHHHHHHHHHHHcCCH
Q 007634 190 YAPAYYNLGVVYSELMQY 207 (595)
Q Consensus 190 ~~~~~~~la~~~~~~g~~ 207 (595)
....+..+.....+.|+.
T Consensus 970 r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHhCCCh
Confidence 344444454444544443
No 263
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.79 E-value=12 Score=39.95 Aligned_cols=195 Identities=10% Similarity=0.020 Sum_probs=101.6
Q ss_pred HHHhCCHHHHHHHHHHHHHcC-CCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHh
Q 007634 92 LQMQNMGRLAFDSFSEAVKLD-PQN----ACAHTHCGILYKDEGRLVEAAESYHKALSADP---SYKPAAECLAIVLTDL 163 (595)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~-p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~---~~~~~~~~~a~~~~~l 163 (595)
....|+.++++..+.+.+... .++ .-+++.+|.++...+ .++...+...+.... ..........-+...+
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 445678888888887766522 222 235666676665555 467887777775432 1111111111234466
Q ss_pred HHHHHHhCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 007634 164 GTSLKLAGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (595)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 241 (595)
|.++.-.++ +++.+.+...+..+... ..+-+.+|.++.-.|+-+.....+..+.+...+...-...+|..+...|+.
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 666665554 46667777776643321 134456777777777776666666655543333222233344444566776
Q ss_pred HHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh
Q 007634 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294 (595)
Q Consensus 242 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 294 (595)
+.+....+..... . ++...+. .-..+|..|...|+......++..+..
T Consensus 541 e~~~~li~~L~~~-~-dp~vRyg---aa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 541 ELADDLITKMLAS-D-ESLLRYG---GAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp GGGHHHHHHHHHC-S-CHHHHHH---HHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-C-CHHHHHH---HHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 6666665554432 2 2222221 122334444556665444445555443
No 264
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.52 E-value=5e-06 Score=78.85 Aligned_cols=266 Identities=15% Similarity=0.109 Sum_probs=188.3
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (595)
..++.|..+|...+..++..+|++.|-++ .+|. .+.....+..+.|++++=+.++..+-+. -..+.+-..+..+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps---~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPS---SYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCC---SSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--CChH---HHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence 45667888999999999999999887654 3444 4445555666788999888888776544 4455566677788
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g 205 (595)
|.+.++..+-.+++. .|+..+ ....|.-++..|.|+.|.-+|... .-|..|+.++..+|
T Consensus 126 yAk~~rL~elEefl~-----~~N~A~--------iq~VGDrcf~e~lYeAAKilys~i--------sN~akLAstLV~L~ 184 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-----GPNNAH--------IQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLG 184 (624)
T ss_dssp HHTSCSSSTTTSTTS-----CCSSSC--------THHHHHHHHHSCCSTTSSTTGGGS--------CCCTTTSSSSSSCS
T ss_pred HHhhCcHHHHHHHHc-----CCCccc--------HHHHHHHHHHccCHHHHHHHHHhC--------ccHHHHHHHHHHHH
Confidence 888888654333221 344333 455677788888888887666432 22456788889999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHH
Q 007634 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285 (595)
Q Consensus 206 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 285 (595)
+|..|.+..+++ +++.+|-.....+...+++.-|.-+--..+-.... +-.+-..|...|.+++-
T Consensus 185 ~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIvhade-----------L~elv~~YE~~G~f~EL 248 (624)
T 3lvg_A 185 EYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE-----------LEELINYYQDRGYFEEL 248 (624)
T ss_dssp GGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC-----------CSGGGSSSSTTCCCTTS
T ss_pred HHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH-----------HHHHHHHHHhCCCHHHH
Confidence 999998877664 56778888888999999998887776665533322 23456677888999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCC------CHHHHHHHHHHHHHcCCHHHHHH
Q 007634 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--NPH------CAEACNNLGVIYKDRDNLDKAVE 355 (595)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~~~------~~~~~~~la~~~~~~~~~~~A~~ 355 (595)
+.+++.++.+...+......||.+|.+- ++++-.++++..... -|. ....|..+..+|..-.+++.|..
T Consensus 249 IsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 249 ITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 9999999998888999999999888764 455555555432221 122 24567788888888888887763
No 265
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=83.62 E-value=26 Score=31.90 Aligned_cols=84 Identities=12% Similarity=-0.073 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH-
Q 007634 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV- 376 (595)
Q Consensus 298 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~- 376 (595)
.+++.+..+|..+...|++.+|..+|-..- .++++.+..+-.-+... .-.-.|.....+...+.
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~---~~s~~~~a~~l~~w~~~------------~~~~~~~e~dlf~~RaVL 196 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGT---HDSMIKYVDLLWDWLCQ------------VDDIEDSTVAEFFSRLVF 196 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSC---HHHHHHHHHHHHHHHHH------------TTCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCC---CccHHHHHHHHHHHHHh------------cCCCCcchHHHHHHHHHH
Confidence 478889999999999999988888774221 11222222222211111 00012222333333333
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 007634 377 VYTVQGKMDAAAEMIEKAIA 396 (595)
Q Consensus 377 ~~~~~g~~~~A~~~~~~al~ 396 (595)
.|...|+...|...+....+
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 36678888888888776653
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=82.57 E-value=29 Score=31.63 Aligned_cols=48 Identities=8% Similarity=-0.011 Sum_probs=34.6
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA 108 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 108 (595)
..+..+.+-+.....|+|=+|.+.++-+.. -|.+++++++|++.+...
T Consensus 12 ~~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~--------------Ry~~~~~~~eAidlL~~g 59 (312)
T 2wpv_A 12 KLAKTLQRFENKIKAGDYYEAHQTLRTIAN--------------RYVRSKSYEHAIELISQG 59 (312)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHH--------------HHHHhcCHHHHHHHHHHH
Confidence 466677777888889999999988876644 355667777777765544
No 267
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.60 E-value=35 Score=31.34 Aligned_cols=49 Identities=10% Similarity=-0.054 Sum_probs=33.7
Q ss_pred CchHHHHHHHHHHHhCCCH---HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKF---VDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA 108 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 108 (595)
...+..+.+-+.....|+| =+|-+.++-+.. -|.+.++|++|++++...
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~--------------Ry~~~k~y~eAidLL~~G 61 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLVAA--------------RYSKQGNWAAAVDILASV 61 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH--------------HHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHH--------------HHHhhcCHHHHHHHHHHH
Confidence 4566677777788888888 777777765533 256677777777765543
No 268
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=75.46 E-value=28 Score=37.71 Aligned_cols=92 Identities=13% Similarity=0.023 Sum_probs=70.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-------------------
Q 007634 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD------------------- 112 (595)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------------- 112 (595)
......+...|.++-|.+ .+.--|.++..-+.+|.+++..|++++|..+|+++-.--
T Consensus 814 ~~l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 814 TELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 346677788888876544 456678888888999999999999999999999875210
Q ss_pred --CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007634 113 --PQ--NACAHTHCGILYKDEGRLVEAAESYHKALSADP 147 (595)
Q Consensus 113 --p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 147 (595)
++ ....|.....++...+-++-++...+.|+....
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~ 928 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE 928 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Confidence 01 123667788889999999999999999997544
No 269
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=73.50 E-value=61 Score=35.14 Aligned_cols=53 Identities=9% Similarity=0.013 Sum_probs=41.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 87 GKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKAL 143 (595)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 143 (595)
.+...+...|.++-|. ..+...|.++..-+.+|.++...|++++|..+|+++-
T Consensus 815 ~l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3556667778877554 3556778888888899999999999999999999875
No 270
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=71.60 E-value=26 Score=28.12 Aligned_cols=66 Identities=8% Similarity=-0.086 Sum_probs=48.2
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--H----HHHHH---HHHHHHHhCCHHHHHHHHHHHHHc
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN--V----EAHIG---KGICLQMQNMGRLAFDSFSEAVKL 111 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~----~~~~~---la~~~~~~g~~~~A~~~~~~al~~ 111 (595)
......+..+..++..|+|-+|=+.++.+-...+.. . ..+.. .|......|+...|...+.+++..
T Consensus 30 ~~~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 30 ETLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 445677889999999999999999999998876554 1 22222 233445678888888888888763
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=68.40 E-value=31 Score=28.85 Aligned_cols=48 Identities=6% Similarity=0.079 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007634 350 LDKAVECYQMALSI--KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (595)
Q Consensus 350 ~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (595)
..++...|...... ....+..|...|..+...|++.+|...|+..++.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 33444444443332 2333444444444455555555555555555443
No 272
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=67.89 E-value=63 Score=28.33 Aligned_cols=15 Identities=20% Similarity=0.082 Sum_probs=8.9
Q ss_pred cCCHHHHHHHHHHHH
Q 007634 415 AGSISLAIDAYEQCL 429 (595)
Q Consensus 415 ~g~~~~A~~~~~~al 429 (595)
+++.++|....++++
T Consensus 191 ln~~~~Ac~lAk~Af 205 (260)
T 1o9d_A 191 LNSPDRACNLAKQAF 205 (260)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 566666666555554
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=67.82 E-value=38 Score=28.32 Aligned_cols=65 Identities=8% Similarity=-0.009 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007634 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (595)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 433 (595)
..+|..++..+ ..++..++...|.-.... ....+..|...|..+...|++.+|.+.|+..++..-
T Consensus 80 LklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 80 LKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp HHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 44666666654 244467888888887765 456688999999999999999999999999998654
No 274
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=67.69 E-value=0.0096 Score=57.01 Aligned_cols=176 Identities=14% Similarity=0.080 Sum_probs=126.3
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (595)
.+....-..|..++..|.|+.|.-+|..+ .-|..+|.++..+|+|..|++..+++ +++..|......
T Consensus 142 ~N~A~iq~VGDrcf~e~lYeAAKilys~i--------sN~akLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~A 208 (624)
T 3lvg_A 142 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFA 208 (624)
T ss_dssp CSSSCTHHHHHHHHHSCCSTTSSTTGGGS--------CCCTTTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHH
T ss_pred CCcccHHHHHHHHHHccCHHHHHHHHHhC--------ccHHHHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHH
Confidence 34445567788888888888887777543 22456888889999999888877665 677888888889
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 007634 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (595)
Q Consensus 126 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g 205 (595)
+...+++.-|..+--.++-. ++. +-.+...|...|.+++-+..++.++.+..-+...+..||.+|.+-
T Consensus 209 Cvd~~EfrLAqicGLniIvh-ade----------L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY- 276 (624)
T 3lvg_A 209 CVDGKEFRLAQMCGLHIVVH-ADE----------LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF- 276 (624)
T ss_dssp HHHSCTTTTTTHHHHHHHCC-SSC----------CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-
T ss_pred HhCchHHHHHHHhcchhccc-HHH----------HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-
Confidence 99999988887776666543 332 333455667789999999999999998888899999999888654
Q ss_pred CHHHHHHHHHHHHHh--CCC------CHHHHHHHHHHHHHcCCHHHHHH
Q 007634 206 QYDTALGCYEKAALE--RPM------YAEAYCNMGVIYKNRGDLESAIA 246 (595)
Q Consensus 206 ~~~~A~~~~~~al~~--~~~------~~~~~~~la~~~~~~~~~~~A~~ 246 (595)
+.++-.++++.-... -|. ....|..+..+|..-.+++.|..
T Consensus 277 ~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 277 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 455555554432110 121 24467777888888888887754
No 275
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=65.44 E-value=68 Score=27.84 Aligned_cols=62 Identities=13% Similarity=0.120 Sum_probs=44.0
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH-hCCHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG-NVEAHIGKGICLQM-QNMGRLAFDSFSEA 108 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~-~g~~~~A~~~~~~a 108 (595)
+-+.++.+|...-+.++|++.....+++.+.++. +.+-...+..+|-. .|....+...+...
T Consensus 3 ~re~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissi 66 (248)
T 3uzd_A 3 DREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSI 66 (248)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 3467888999999999999999999999887765 55666666666643 34445555555433
No 276
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=65.34 E-value=84 Score=28.84 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007634 222 PMYAEAYCNMGVIYKNRGDLESAIACY 248 (595)
Q Consensus 222 ~~~~~~~~~la~~~~~~~~~~~A~~~~ 248 (595)
-.+++.+..+|..|.+.+++.+|..+|
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 357899999999999999999998887
No 277
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=65.28 E-value=19 Score=24.31 Aligned_cols=28 Identities=4% Similarity=0.032 Sum_probs=13.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 007634 53 SYANILRSRNKFVDALALYEIVLEKDSG 80 (595)
Q Consensus 53 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 80 (595)
.+|+.+...|++++|...|-+++...|.
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 3444445555555555544444444443
No 278
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=64.47 E-value=73 Score=27.85 Aligned_cols=62 Identities=13% Similarity=0.143 Sum_probs=46.0
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH-hCCHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG-NVEAHIGKGICLQM-QNMGRLAFDSFSEA 108 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~-~g~~~~A~~~~~~a 108 (595)
+-+.++.+|...-+.++|++.....+++.+.++. +.+-...+..+|-. .|....+...+...
T Consensus 30 ~re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissi 93 (261)
T 3ubw_A 30 DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSI 93 (261)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHH
Confidence 5688999999999999999999999999987765 55666677766643 24445555555443
No 279
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=64.09 E-value=20 Score=24.17 Aligned_cols=29 Identities=21% Similarity=0.086 Sum_probs=17.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCc
Q 007634 87 GKGICLQMQNMGRLAFDSFSEAVKLDPQN 115 (595)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~~al~~~p~~ 115 (595)
.+|..+...|++++|...|-+|+...|+-
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 45666666666666666666666665543
No 280
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=63.47 E-value=51 Score=25.65 Aligned_cols=83 Identities=7% Similarity=-0.088 Sum_probs=57.6
Q ss_pred hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007634 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249 (595)
Q Consensus 170 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 249 (595)
.|+....+.+|-+. +.. .+..-.--..+..+|+-++-.+.+...+...+-+++.+..+|.+|.+.|+..+|.+.+.
T Consensus 74 C~NlKrVi~C~~~~---n~~-se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 74 CQNLKSVVECGVIN---NTL-NEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp CSCTHHHHHHHHHT---TCC-CHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhcHHHHHHHHHHh---cch-HHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 35666666665443 111 22222223456678888888888888767777779999999999999999999999999
Q ss_pred HHHhcCC
Q 007634 250 RCLAVSP 256 (595)
Q Consensus 250 ~al~~~~ 256 (595)
+|.+..-
T Consensus 150 ~AC~kG~ 156 (172)
T 1wy6_A 150 EACKKGE 156 (172)
T ss_dssp HHHHTTC
T ss_pred HHHHhhh
Confidence 9876543
No 281
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=63.38 E-value=56 Score=26.17 Aligned_cols=67 Identities=7% Similarity=-0.011 Sum_probs=46.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH-HHhHHHHHHhCChHHHHHHHHHHHhh
Q 007634 120 THCGILYKDEGRLVEAAESYHKALSADPSY-KPAAECLAIVL-TDLGTSLKLAGNTQDGIQKYYEALKI 186 (595)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~a~~~-~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (595)
+..+..++..|+|=+|-+.++.+....+.. .+.....+.+. ...|......|+...|...+.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 455667777899999999999988776554 12333345455 55666667778888888888887663
No 282
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=62.61 E-value=12 Score=36.19 Aligned_cols=17 Identities=0% Similarity=-0.101 Sum_probs=11.5
Q ss_pred HHHHHHHhCCCcEEEeC
Q 007634 557 KVAAMVREDKIDILVEL 573 (595)
Q Consensus 557 ~~a~~i~~d~idilvdl 573 (595)
=+|..|++--|+-=||-
T Consensus 403 IlA~LI~~G~IkGyIsh 419 (455)
T 3t5v_B 403 VLVTLINLGLLRANCFP 419 (455)
T ss_dssp HHHHHHHHTSCCEEEET
T ss_pred HHHHHHHcCCeEEEEec
Confidence 46778887777655554
No 283
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=62.01 E-value=82 Score=27.61 Aligned_cols=61 Identities=11% Similarity=0.150 Sum_probs=44.1
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CC-CHHHHHHHHHHHHH-hCCHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKD--SG-NVEAHIGKGICLQM-QNMGRLAFDSFSE 107 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~-~~~~~~~la~~~~~-~g~~~~A~~~~~~ 107 (595)
+-+.++.+|....+.++|++...+.+++.+.+ +. +.+-...+..+|-. .|....+...+..
T Consensus 7 ~re~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiiss 71 (260)
T 1o9d_A 7 AREENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISS 71 (260)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 46788899999999999999999999999976 43 55666666666543 2444444554444
No 284
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=60.79 E-value=1.5e+02 Score=30.28 Aligned_cols=31 Identities=16% Similarity=0.056 Sum_probs=22.3
Q ss_pred HHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCC
Q 007634 404 AYNNLGVLY--RDAGSISLAIDAYEQCLKIDPDS 435 (595)
Q Consensus 404 ~~~~la~~~--~~~g~~~~A~~~~~~al~~~p~~ 435 (595)
.+..+..++ ...|+++.|++.+++ +.+-|-+
T Consensus 538 lLl~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 538 LLLNISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 344555555 789999999999988 5677765
No 285
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=60.03 E-value=15 Score=37.76 Aligned_cols=50 Identities=12% Similarity=0.060 Sum_probs=37.1
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN 96 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 96 (595)
..+..+..|+..+..|+|.-|.++.+.++..+|+|.++...++.++.++|
T Consensus 448 g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 448 GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777777777777777777777776665
No 286
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=59.85 E-value=45 Score=23.87 Aligned_cols=62 Identities=13% Similarity=0.080 Sum_probs=41.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHh
Q 007634 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185 (595)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 185 (595)
..|..++..|+|=+|-+.++......|. +......+.+....|......|+. |...+.+++.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~-~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATG-EERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 3456667778888888888888877754 333344455555556666667777 7777777765
No 287
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=58.57 E-value=63 Score=25.15 Aligned_cols=53 Identities=11% Similarity=-0.142 Sum_probs=28.3
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 007634 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 362 (595)
Q Consensus 310 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 362 (595)
+..+|+-++-.+.+...+...+-+++.+..+|.+|.+.|+..+|.+.+.+|-+
T Consensus 101 lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 101 LVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34455555555555554444444556666666666666666666666555544
No 288
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=57.53 E-value=93 Score=26.79 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=42.9
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH-hCCHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG-NVEAHIGKGICLQM-QNMGRLAFDSFS 106 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~-~g~~~~A~~~~~ 106 (595)
+-+.++.+|....+.++|++.....+++.+.++. +.+-...+..+|-. .|....+...+.
T Consensus 4 ~re~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiis 65 (234)
T 2br9_A 4 DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIIS 65 (234)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3577888999999999999999999999987664 55666666666643 233444444443
No 289
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=56.88 E-value=16 Score=25.70 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVL 75 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l 75 (595)
+-..-.+|+.+...|+|++|+++.+++.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 4455668888999999999988877764
No 290
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=56.66 E-value=92 Score=30.11 Aligned_cols=62 Identities=10% Similarity=0.069 Sum_probs=34.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCc
Q 007634 197 LGVVYSELMQYDTALGCYEKAALERP----------MYAEAYCNMGVIYKNRGDLESAIACYERCLAV-SPNF 258 (595)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~~~----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~ 258 (595)
+-.+|++.|+...+...++..-...+ ......+.+|.++...++|.+|.+.+..|+.. .|..
T Consensus 182 L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 182 LNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 33555555555555555543322211 11345566677777777777777777777666 5543
No 291
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=56.61 E-value=39 Score=24.16 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=18.2
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhhCC
Q 007634 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDP 188 (595)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~ 188 (595)
-..+|..+...|+++.|+.+|-+++...|
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~ 51 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCG 51 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 44566666666777777766666665544
No 292
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=54.77 E-value=25 Score=24.42 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=22.2
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEK 77 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 77 (595)
.++.++..|..+++.++|.+|..+|+++...
T Consensus 52 ~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 52 KARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 4566677777777777777777777777643
No 293
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=53.34 E-value=2e+02 Score=29.39 Aligned_cols=21 Identities=14% Similarity=0.127 Sum_probs=16.6
Q ss_pred HhcCCHHHHHHHHHHHHhhCCC
Q 007634 311 GEMLKFDMAIVFYELAFHFNPH 332 (595)
Q Consensus 311 ~~~~~~~~A~~~~~~~l~~~~~ 332 (595)
...|+++.|+..+++ +.+-|.
T Consensus 549 ~~~g~~~~AL~~i~~-L~llPl 569 (661)
T 2qx5_A 549 YFNKQWQETLSQMEL-LDLLPF 569 (661)
T ss_dssp HHTTCHHHHHHHHHH-TSCSCC
T ss_pred HHcCCHHHHHHHHHh-CCCCCC
Confidence 778999999998888 456664
No 294
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=52.99 E-value=23 Score=24.69 Aligned_cols=29 Identities=14% Similarity=0.118 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLE 76 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (595)
+-.++..|...-+.|+|++|+.+|.++++
T Consensus 19 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 19 ARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44566666666777777777777666654
No 295
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=52.81 E-value=1.2e+02 Score=26.59 Aligned_cols=17 Identities=18% Similarity=0.128 Sum_probs=10.5
Q ss_pred HcCCHHHHHHHHHHHHh
Q 007634 414 DAGSISLAIDAYEQCLK 430 (595)
Q Consensus 414 ~~g~~~~A~~~~~~al~ 430 (595)
-+|+.++|....++++.
T Consensus 210 iln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 210 ILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp TSCCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 36666666666666554
No 296
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=52.70 E-value=36 Score=24.38 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=17.4
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHhhCCC
Q 007634 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWH 298 (595)
Q Consensus 269 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 298 (595)
...+|..+...|+++.|+.+|-+++...|.
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 344555555566666666666666555443
No 297
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=52.03 E-value=19 Score=25.79 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=21.2
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLE 76 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (595)
.+-.++..|...-..|+|++|+.+|..+++
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345567777777777888888777776654
No 298
>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=51.18 E-value=11 Score=22.65 Aligned_cols=27 Identities=11% Similarity=0.400 Sum_probs=24.0
Q ss_pred CceeeCCCCCHHHHHHHHHhCCCcEEE
Q 007634 545 GIWRDIYGIDEKKVAAMVREDKIDILV 571 (595)
Q Consensus 545 ~~~~~~~~~~~~~~a~~i~~d~idilv 571 (595)
..|-++-|++.++++..|..|+.|+-|
T Consensus 8 ~sWPELVG~~~~~A~~~I~~e~P~v~v 34 (45)
T 1hym_A 8 SSWPHLVGVGGSVAKAIIERQNPNVKA 34 (45)
T ss_dssp SBCCCCTTSCHHHHHHHHHHHCTTCEE
T ss_pred CcChhhcCCcHHHHHHHHHHHCCCCeE
Confidence 579999999999999999999988643
No 299
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=51.01 E-value=36 Score=24.00 Aligned_cols=31 Identities=23% Similarity=0.116 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 007634 153 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEA 183 (595)
Q Consensus 153 ~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~ 183 (595)
....+..+...+..+...|+|++|+++.+++
T Consensus 11 pLn~AH~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 11 PLNLAHQQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhhhHhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 3345555666677777777777777666554
No 300
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=50.61 E-value=26 Score=24.62 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=22.5
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLE 76 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (595)
.+-.++..|...-..|+|++|+.+|..+++
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677777777888888888888777765
No 301
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=49.85 E-value=27 Score=24.31 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007634 50 DALSYANILRSRNKFVDALALYEIVL 75 (595)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l 75 (595)
.++..|...=+.|+|++|+.+|.+++
T Consensus 13 ~lv~~Ave~D~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 13 KYAILAVKADKEGKVEDAITYYKKAI 38 (83)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34455555555555555555555444
No 302
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=49.00 E-value=70 Score=22.85 Aligned_cols=60 Identities=13% Similarity=0.012 Sum_probs=30.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHH
Q 007634 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293 (595)
Q Consensus 231 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 293 (595)
.|..++..|+|=+|-+.++..-...|. +......+.+....|......|+. |...+.+++
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~-~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~ 66 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATG-EERRLLQGVILLAAALHQRRLGRP--GLRNLRKAE 66 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHH
Confidence 455566667777777777777666643 222222333333333333334444 444444443
No 303
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=48.15 E-value=44 Score=28.16 Aligned_cols=29 Identities=14% Similarity=-0.050 Sum_probs=12.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007634 119 HTHCGILYKDEGRLVEAAESYHKALSADP 147 (595)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 147 (595)
.+.+|.++...++|.+|.+.+..|+...|
T Consensus 17 ~YYlGr~~~~~~~y~~A~~~L~~A~~~~~ 45 (203)
T 3t5x_A 17 KYYVGRKAMFDSDFKQAEEYLSFAFEHCH 45 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHCC
Confidence 33344444444444444444444444433
No 304
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=46.89 E-value=1.4e+02 Score=25.70 Aligned_cols=49 Identities=16% Similarity=0.300 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHh-----cCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHH
Q 007634 242 ESAIACYERCLA-----VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293 (595)
Q Consensus 242 ~~A~~~~~~al~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 293 (595)
+.|...|+.|.. +.|.+|. .++.++..--..|...++.++|....++++
T Consensus 150 e~a~~aY~~A~~iA~~~L~pthPi---rLGLaLNfSVFyyEiln~~~~Ac~lAk~Af 203 (236)
T 3iqu_A 150 DSARSAYQEAMDISKKEMPPTNPI---RLGLALNFSVFHYEIANSPEEAISLAKTTF 203 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHH---HHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456667776654 4666663 234444433344556778888877776664
No 305
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=46.06 E-value=18 Score=24.85 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEK 77 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 77 (595)
.-..+.+|+.+...|+|+.|+.+|+.+++.
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 456678888888899999999999888763
No 306
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=44.87 E-value=72 Score=26.81 Aligned_cols=35 Identities=14% Similarity=-0.079 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH
Q 007634 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA 116 (595)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (595)
....+.+|..++..++|.+|.+.+..|++..|...
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 45788999999999999999999999999988654
No 307
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=42.15 E-value=19 Score=24.55 Aligned_cols=34 Identities=12% Similarity=0.151 Sum_probs=24.8
Q ss_pred hhHHHHHHhhhcCCceeeCCCCCHHHHHHHHHhCCCcE
Q 007634 532 KTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDI 569 (595)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~idi 569 (595)
+...++..++. .-.-.++||.++++.+.+.||+|
T Consensus 21 Ik~~Ik~lI~~----Ed~~kPlSD~~I~~~L~~~Gi~I 54 (76)
T 2ahq_A 21 LMKLIKEIVEN----EDKRKPYSDQEIANILKEKGFKV 54 (76)
T ss_dssp HHHHHHHHGGG----CCSSSCCCHHHHHHHHTTTSSCC
T ss_pred HHHHHHHHHHh----cCCCCCCCHHHHHHHHHHcCCCc
Confidence 45555555532 33345799999999999999987
No 308
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=41.15 E-value=1.1e+02 Score=28.24 Aligned_cols=16 Identities=6% Similarity=0.183 Sum_probs=10.6
Q ss_pred CCCHHHHHHHHHHHHH
Q 007634 61 RNKFVDALALYEIVLE 76 (595)
Q Consensus 61 ~g~~~~A~~~~~~~l~ 76 (595)
....+..+++|+..+.
T Consensus 13 l~~i~~Vv~lF~~~L~ 28 (472)
T 3re2_A 13 LKDIKSVVEVFRQELR 28 (472)
T ss_dssp BCSHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHhc
Confidence 3456667777777776
No 309
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=40.13 E-value=1.9e+02 Score=26.65 Aligned_cols=44 Identities=20% Similarity=0.130 Sum_probs=29.0
Q ss_pred HHHHHHHHHcc-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007634 353 AVECYQMALSI-----KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (595)
Q Consensus 353 A~~~~~~al~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 396 (595)
++..|.+++.. ...+...+..+|-.+++.+++.+|+..+..+-.
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 55555555543 234455667777788888888888877776654
No 310
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=39.91 E-value=46 Score=23.18 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=20.3
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLE 76 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (595)
.+..++..|...-..|+|++|+.+|..+++
T Consensus 12 ~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 12 KGIELVQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344566667666777777777777776654
No 311
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.22 E-value=2.6e+02 Score=26.33 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=12.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 338 NNLGVIYKDRDNLDKAVECYQMAL 361 (595)
Q Consensus 338 ~~la~~~~~~~~~~~A~~~~~~al 361 (595)
..++..|...|+.++|...++++-
T Consensus 131 ~~i~~~yl~~~d~~~a~~~l~~~~ 154 (393)
T 4b4t_O 131 SEIARTYLLKNDLVKARDLLDDLE 154 (393)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344445555555555555555443
No 312
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=38.10 E-value=1.5e+02 Score=23.56 Aligned_cols=90 Identities=14% Similarity=0.044 Sum_probs=61.8
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHcCCCcHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG--NVEAHIGKGICLQMQNMGRL-AFDSFSEAVKLDPQNACAHTHCG 123 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~la 123 (595)
.-...+..|...|-..+|.+.+..++.. +|. .....+.+|..|....++.+ .......-+.+.. .-.+.+=
T Consensus 7 P~q~a~i~a~~afl~~dYs~VI~~L~~~---~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkS---de~yL~Y 80 (161)
T 2ynq_A 7 PKQEAYIQSTELFLQNKYSDVITTLEDY---APEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKT---DEQYMLY 80 (161)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTTS---CGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTS---CHHHHHH
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHhcC---ChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccC---CHHHHHH
Confidence 3456778889999999999999988764 443 45788999999998877652 2333322222222 2223344
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 007634 124 ILYKDEGRLVEAAESYHKA 142 (595)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~ 142 (595)
+++...|++++|+.+.+..
T Consensus 81 WIyiGRg~~~eAlDiA~~L 99 (161)
T 2ynq_A 81 WIYIGRSQSEEALELARTI 99 (161)
T ss_dssp HHHHHHTCHHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHhc
Confidence 6788899999999987765
No 313
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=37.84 E-value=2.1e+02 Score=25.08 Aligned_cols=61 Identities=11% Similarity=0.108 Sum_probs=43.9
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---C-CCHHHHHHHHHHHHH-hCCHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKD---S-GNVEAHIGKGICLQM-QNMGRLAFDSFSE 107 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p-~~~~~~~~la~~~~~-~g~~~~A~~~~~~ 107 (595)
+-+.++.+|....+.++|++...+.+++.+.+ + -+.+-...+..+|-. .|....+...+..
T Consensus 27 ~re~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyKNvIg~rR~swRiiss 92 (260)
T 2npm_A 27 ARESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKNAVGSRRSSWRIISS 92 (260)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 46788899999999999999999999999976 4 356666777776643 2444444444443
No 314
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=37.84 E-value=34 Score=25.75 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLE 76 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (595)
+..++..|...-..|+|++|+.+|..+++
T Consensus 18 Ai~lv~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 18 AIDLASKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44556666666666777777777666554
No 315
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=37.04 E-value=1.5e+02 Score=23.21 Aligned_cols=85 Identities=12% Similarity=0.096 Sum_probs=49.7
Q ss_pred CeEEEEecCCcccchHHHhhhhhhcccCCCceEEEEeeCCccCChhhHHHHHHhhhcCCceeeCCCCCHHHHHHHHHhCC
Q 007634 487 PLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDK 566 (595)
Q Consensus 487 ~l~igy~s~d~~~h~~~~~~~~~~~~~d~~~fe~~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~ 566 (595)
+++|+|++.--...-+..++..+-......++++++...++..+. +++.+..... -+.+..++..++.+.+..
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~~~~~----~~~~~~~~~~-~v~~g~~~~~~~~~~~~~-- 74 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSKYKQDIVLLLKGKGPDEKK----IKLLAQKLGV-KAEFGFVNSNELLEILKT-- 74 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCTTGGGEEEEEECCSTTHHH----HHHHHHHHTC-EEECCCCCHHHHHHHHTT--
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhccCCCeEEEEEeCCccHHH----HHHHHHHcCC-eEEEeecCHHHHHHHHHh--
Confidence 578888877655554555555443333345788888775543333 3333322222 334455677888888765
Q ss_pred CcEEEeCCCCCC
Q 007634 567 IDILVELTGHTA 578 (595)
Q Consensus 567 idilvdl~g~t~ 578 (595)
-||+|-++-+.+
T Consensus 75 adv~v~ps~~e~ 86 (166)
T 3qhp_A 75 CTLYVHAANVES 86 (166)
T ss_dssp CSEEEECCCSCC
T ss_pred CCEEEECCcccC
Confidence 588888775443
No 316
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=36.88 E-value=1.1e+02 Score=26.80 Aligned_cols=89 Identities=7% Similarity=-0.014 Sum_probs=55.8
Q ss_pred CCCCeEEEEecCCcccchHHHhhhhhhcccCCCceEEEEeeCCccCChhhHHHHHHhhhcCCceeeCCCCCHHHHHHHHH
Q 007634 484 PERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVR 563 (595)
Q Consensus 484 ~~~~l~igy~s~d~~~h~~~~~~~~~~~~~d~~~fe~~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~ 563 (595)
.++..+||++.++..+.-...++.++-+......+++.++....+.+.....++.......|...-..... .+..+.+.
T Consensus 4 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~l~ 82 (276)
T 3jy6_A 4 TQSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN-PQTVQEIL 82 (276)
T ss_dssp -CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC-HHHHHHHH
T ss_pred CCCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc-HHHHHHHH
Confidence 35667899999998666566777777777777778998887554333333334443333345555444334 66777888
Q ss_pred hCCCcE-EEeC
Q 007634 564 EDKIDI-LVEL 573 (595)
Q Consensus 564 ~d~idi-lvdl 573 (595)
+.+|=+ +||-
T Consensus 83 ~~~iPvV~i~~ 93 (276)
T 3jy6_A 83 HQQMPVVSVDR 93 (276)
T ss_dssp TTSSCEEEESC
T ss_pred HCCCCEEEEec
Confidence 778764 4443
No 317
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=35.84 E-value=2e+02 Score=24.27 Aligned_cols=72 Identities=10% Similarity=-0.023 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-HHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007634 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDL-GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (595)
Q Consensus 132 ~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l-~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 203 (595)
.+.|+..++.+-+-.+-........-.+.... -.++...|.+++|.+.+++.+..++.+......|..+-.+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~ 160 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIRE 160 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Confidence 35566666665554433222222222222222 2234556667777777766666555544444444444333
No 318
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=35.82 E-value=2.1e+02 Score=24.59 Aligned_cols=63 Identities=16% Similarity=0.157 Sum_probs=46.8
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH-hCCHHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG-NVEAHIGKGICLQM-QNMGRLAFDSFSEAV 109 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~-~g~~~~A~~~~~~al 109 (595)
+-+.++.+|...-+.++|++.....+++.+.++. +.+-...+..+|-. .|....+...+....
T Consensus 7 ~re~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiissie 71 (236)
T 3iqu_A 7 ERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIE 71 (236)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 5678899999999999999999999999988765 55666777777643 344455555554433
No 319
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=35.65 E-value=1.6e+02 Score=23.24 Aligned_cols=127 Identities=7% Similarity=-0.067 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHH
Q 007634 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 317 (595)
Q Consensus 238 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 317 (595)
+....-+...|+..+.....+......+-.+-...-..-.........++-+-+....++..-.--..+-.........+
T Consensus 3 ~~~~~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~ 82 (152)
T 4a1g_A 3 MDTPENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENKEYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYNS 82 (152)
T ss_dssp -CHHHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCTHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTBS
T ss_pred CchHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhcC
Q ss_pred HHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 007634 318 MAIVFYELAFHF--NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (595)
Q Consensus 318 ~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 364 (595)
++...|.-+... ....+..|...|..+...|++.+|.++|+.+++..
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
No 320
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=35.30 E-value=42 Score=22.98 Aligned_cols=26 Identities=4% Similarity=-0.060 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Q 007634 85 HIGKGICLQMQNMGRLAFDSFSEAVK 110 (595)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~ 110 (595)
...+|+-+...|+|+.|+.+|+.+++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 34566666667777777777766654
No 321
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=34.69 E-value=2.3e+02 Score=24.61 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHh-----cCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHH
Q 007634 242 ESAIACYERCLA-----VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293 (595)
Q Consensus 242 ~~A~~~~~~al~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 293 (595)
+.|...|+.|.. +.|.+|. .++.++..--..|...++.++|....++++
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPi---rLGLaLNfSVFyYEIln~~~~Ac~lAk~Af 201 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPI---RLGLALNYSVFYYEIQNAPEQACHLAKTAF 201 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHH---HHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456666766654 4666663 234444433344555777777777766664
No 322
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=34.04 E-value=2.4e+02 Score=26.64 Aligned_cols=43 Identities=9% Similarity=0.071 Sum_probs=27.1
Q ss_pred HHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007634 319 AIVFYELAFHF-----NPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 361 (595)
Q Consensus 319 A~~~~~~~l~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 361 (595)
++.+|.+++.. ...+...|..+|-.+++.+++.+|+..+-.+-
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa 345 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 345 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHH
Confidence 45555555543 33445666777777777777777777766554
No 323
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=38.40 E-value=9.6 Score=39.19 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=46.5
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHH
Q 007634 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGR 99 (595)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 99 (595)
...+..+..|+..+..|+|.-|.++++.++..+|++.++...++.++.++|.-.
T Consensus 459 Gg~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~ 512 (668)
T 2yhe_A 459 GGADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQT 512 (668)
Confidence 345778888999999999999999999999999999999999999888887544
No 324
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=32.11 E-value=75 Score=28.19 Aligned_cols=87 Identities=11% Similarity=0.006 Sum_probs=50.8
Q ss_pred CCCeEEEEecCCcccchHHHhhhhhhcccCCCceEEEEeeCCccCChhhHHHHHHhhhcCCceeeCCCCCH--HHHHHHH
Q 007634 485 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDE--KKVAAMV 562 (595)
Q Consensus 485 ~~~l~igy~s~d~~~h~~~~~~~~~~~~~d~~~fe~~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~i 562 (595)
++..+||++.++..+.-...++.++-+......+++.++....+.+.....++.......|...-...-++ .+..+.+
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~ 85 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEEA 85 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHHH
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 56678999999877655566677776666666788888865433333333344433333455554322222 2667777
Q ss_pred HhCCCcEEE
Q 007634 563 REDKIDILV 571 (595)
Q Consensus 563 ~~d~idilv 571 (595)
.+.+|=+++
T Consensus 86 ~~~~iPvV~ 94 (293)
T 3l6u_A 86 KKAGIPVFA 94 (293)
T ss_dssp HHTTCCEEE
T ss_pred HHcCCCEEE
Confidence 777877544
No 325
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=31.88 E-value=2.1e+02 Score=24.20 Aligned_cols=86 Identities=14% Similarity=0.151 Sum_probs=45.7
Q ss_pred CCCeEEEEecCCcccchHHHhhhhhhcccCCC--ceEEEEe-eCCccCChhhHHHHHHhhhcCCcee-eCCCCCHHHHHH
Q 007634 485 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQ--NYKVVVY-SAVVKADAKTIRFREKVMKKGGIWR-DIYGIDEKKVAA 560 (595)
Q Consensus 485 ~~~l~igy~s~d~~~h~~~~~~~~~~~~~d~~--~fe~~~y-~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~ 560 (595)
.++.||+.+.+.- +.++..++...... .+||.+. +..++.... ++-++ .....++ +....++.++.+
T Consensus 6 ~~~~ri~vl~SG~-----gsnl~all~~~~~~~~~~~I~~Vis~~~~a~~l-~~A~~---~gIp~~~~~~~~~~~~~~~~ 76 (215)
T 3kcq_A 6 KKELRVGVLISGR-----GSNLEALAKAFSTEESSVVISCVISNNAEARGL-LIAQS---YGIPTFVVKRKPLDIEHIST 76 (215)
T ss_dssp -CCEEEEEEESSC-----CHHHHHHHHHTCCC-CSEEEEEEEESCTTCTHH-HHHHH---TTCCEEECCBTTBCHHHHHH
T ss_pred CCCCEEEEEEECC-----cHHHHHHHHHHHcCCCCcEEEEEEeCCcchHHH-HHHHH---cCCCEEEeCcccCChHHHHH
Confidence 4567888765543 23344555444332 4787655 433333222 12121 1112332 223456789999
Q ss_pred HHHhCCCcEEEeCCCCCCCC
Q 007634 561 MVREDKIDILVELTGHTANN 580 (595)
Q Consensus 561 ~i~~d~idilvdl~g~t~~~ 580 (595)
.|++.++|++| +.|++.--
T Consensus 77 ~L~~~~~Dliv-lagy~~IL 95 (215)
T 3kcq_A 77 VLREHDVDLVC-LAGFMSIL 95 (215)
T ss_dssp HHHHTTCSEEE-ESSCCSCC
T ss_pred HHHHhCCCEEE-EeCCceEe
Confidence 99999999877 45665433
No 326
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=31.79 E-value=2.9e+02 Score=26.11 Aligned_cols=91 Identities=10% Similarity=0.038 Sum_probs=55.0
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CCCCHHHHHHHH
Q 007634 304 YNLGVAYGEML---KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPNFSQSLNNLG 375 (595)
Q Consensus 304 ~~la~~~~~~~---~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~la 375 (595)
..|-++++..| +|..|+-.+-..-+..|.. |+ ..++..|.+++.. ...+...|..+|
T Consensus 261 q~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~--------------gr-~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlg 325 (550)
T 3u84_A 261 QKLLWLLYDLGHLERYPMALGNLADLEELEPTP--------------GR-PDPLTLYHKGIASAKTYYRDEHIYPYMYLA 325 (550)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCT--------------TC-CCHHHHHHHHHHHHHHHSTTCCSHHHHHHH
T ss_pred HHHHHHHHhccchhhCchhhcchhhHhhcCCCC--------------CC-CCHHHHHHHHHHHHHHHhccCCccceeecc
Confidence 44555555555 3445555544444444432 11 1255666666554 344567788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHh------CCCcHHHHHHHH
Q 007634 376 VVYTVQGKMDAAAEMIEKAIAA------NPTYAEAYNNLG 409 (595)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la 409 (595)
-.+++.+++.+|+..+..+-.. ..++.++|-.+-
T Consensus 326 Gy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~ 365 (550)
T 3u84_A 326 GYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFF 365 (550)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHH
T ss_pred hhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHH
Confidence 9999999999999998887653 334555554443
No 327
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=31.60 E-value=3e+02 Score=25.02 Aligned_cols=30 Identities=10% Similarity=-0.048 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 007634 48 GKDALSYANILRSRNKFVDALALYEIVLEK 77 (595)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 77 (595)
....+..|..++..|++++|+..|+.++..
T Consensus 114 L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~ 143 (325)
T 3mv2_A 114 VNEKMNEGYKNFKLNKPDIAIECFREAIYR 143 (325)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 445688999999999999999999999875
No 328
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.03 E-value=2.1e+02 Score=27.03 Aligned_cols=93 Identities=8% Similarity=-0.124 Sum_probs=55.4
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcC-----------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---C-
Q 007634 89 GICLQMQNMGRLAFDSFSEAVKLD-----------------PQNACAHTHCGILYKDEGRLVEAAESYHKALSAD---P- 147 (595)
Q Consensus 89 a~~~~~~g~~~~A~~~~~~al~~~-----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---~- 147 (595)
..+.....+.++|++.+++....- .....+...++..|...|+.++|...++++-..- .
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 345566778899999988764321 0113456677889999999999999998885421 1
Q ss_pred CCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHH
Q 007634 148 SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184 (595)
Q Consensus 148 ~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l 184 (595)
.++.. .+..+...+..+...+++..+....-..+
T Consensus 163 ~~~~v---~~~~y~~~~~~~~~~~~~a~~y~~~l~~l 196 (393)
T 4b4t_O 163 IPLRI---TNSFYSTNSQYFKFKNDFNSFYYTSLLYL 196 (393)
T ss_dssp SSSHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 11111 23334444555555566655544444433
No 329
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=29.28 E-value=1.4e+02 Score=26.48 Aligned_cols=88 Identities=10% Similarity=0.035 Sum_probs=47.9
Q ss_pred CCCeEEEEecCCcccchHHHhhhhhhcccCCCceEEEEeeCCccCChhhH---HHHHHhhhcCCceeeCCCCCHHHHHHH
Q 007634 485 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTI---RFREKVMKKGGIWRDIYGIDEKKVAAM 561 (595)
Q Consensus 485 ~~~l~igy~s~d~~~h~~~~~~~~~~~~~d~~~fe~~~y~~~~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~ 561 (595)
++..+||++.++..+.-...++.++-+......+++.++....+.+.... .++.......|...-.....+.+..+.
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~ 85 (290)
T 2rgy_A 6 QQLGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLHDEDLDE 85 (290)
T ss_dssp --CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSCHHHHHH
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCCHHHHHH
Confidence 45678999998876544455666665555555678877655433333333 344433333455554433222445566
Q ss_pred HHhCCCcE-EEe
Q 007634 562 VREDKIDI-LVE 572 (595)
Q Consensus 562 i~~d~idi-lvd 572 (595)
+.+.+|=+ +||
T Consensus 86 l~~~~iPvV~~~ 97 (290)
T 2rgy_A 86 LHRMHPKMVFLN 97 (290)
T ss_dssp HHHHCSSEEEES
T ss_pred HhhcCCCEEEEc
Confidence 66667654 444
No 330
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=29.12 E-value=3.7e+02 Score=25.39 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=12.3
Q ss_pred HhCCCHHHHHHHHHHHHHc
Q 007634 59 RSRNKFVDALALYEIVLEK 77 (595)
Q Consensus 59 ~~~g~~~~A~~~~~~~l~~ 77 (595)
+=....+.-+.+|+..+..
T Consensus 16 FPl~~i~~vv~lf~~~L~~ 34 (489)
T 4gq4_A 16 FPLRSIDDVVRLFAAELGR 34 (489)
T ss_dssp CSBCSHHHHHHHHHHHHTS
T ss_pred CCcccHHHHHHHHHHHhcC
Confidence 3445666777777777744
No 331
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=29.05 E-value=2.6e+02 Score=23.57 Aligned_cols=59 Identities=8% Similarity=-0.023 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhhCCCCHHH--------HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 007634 282 INQGVAYYKKALYYNWHYADA--------MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 340 (595)
Q Consensus 282 ~~~A~~~~~~~~~~~~~~~~~--------~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 340 (595)
++.|+..++..-...+-.... -.....++.+.|.|++|.+.+++.+..++.+......|
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL 154 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDL 154 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHH
Confidence 455666665555444322111 11222334455555555555555555444333333333
No 332
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=28.91 E-value=93 Score=21.75 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=14.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 007634 409 GVLYRDAGSISLAIDAYEQCLK 430 (595)
Q Consensus 409 a~~~~~~g~~~~A~~~~~~al~ 430 (595)
|.-....|++++|+.+|..+++
T Consensus 23 Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 23 AVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3334566777777777777665
No 333
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=28.54 E-value=34 Score=26.46 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=26.6
Q ss_pred CHHHHHHHHHhCCCcEEEeCCC--CCCCChhhhhhcC
Q 007634 554 DEKKVAAMVREDKIDILVELTG--HTANNKLGMMACQ 588 (595)
Q Consensus 554 ~~~~~a~~i~~d~idilvdl~g--~t~~~~~~~~a~r 588 (595)
.+.++...|.+.+||.+|++.. ........++++|
T Consensus 62 G~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~Ir 98 (134)
T 2xw6_A 62 GDQQMGARVAEGRILAVIFFRDPLTAQPHEPDVQALL 98 (134)
T ss_dssp HHHHHHHHHHTTCEEEEEEECCTTTCCTTSCCSHHHH
T ss_pred CcchHHHHHHCCCccEEEEccCcccCCCccchHHHHH
Confidence 3668999999999999998876 4444356666655
No 334
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=28.35 E-value=47 Score=26.34 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=27.9
Q ss_pred CHHHHHHHHHhCCCcEEEeCCC--CCCCChhhhhhcC
Q 007634 554 DEKKVAAMVREDKIDILVELTG--HTANNKLGMMACQ 588 (595)
Q Consensus 554 ~~~~~a~~i~~d~idilvdl~g--~t~~~~~~~~a~r 588 (595)
.+.++...|.+.+||.+|++.. ........++++|
T Consensus 70 G~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~Ir 106 (152)
T 1b93_A 70 GDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALL 106 (152)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHH
T ss_pred CCchHHHHHHCCCccEEEEcCCcccCCcccccHHHHH
Confidence 4678999999999999999876 5444467777765
No 335
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=28.11 E-value=3.4e+02 Score=24.59 Aligned_cols=88 Identities=9% Similarity=-0.044 Sum_probs=54.6
Q ss_pred CCCCeEEEEecCCcccchHHHhhhhhhcccCCCceEEEEeeCCccCChhhHHHHHHhhhcCCceeeCCCCCHHHHHHHHH
Q 007634 484 PERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVR 563 (595)
Q Consensus 484 ~~~~l~igy~s~d~~~h~~~~~~~~~~~~~d~~~fe~~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~ 563 (595)
.++.-+||++.+++.+.-...++.++-.......+.+.++......+.....++.......|...-+..-.+.+..+.+.
T Consensus 65 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~~~~~~l~ 144 (344)
T 3kjx_A 65 SNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEHSEAARAMLD 144 (344)
T ss_dssp TSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCHHHHHHHH
T ss_pred cCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHH
Confidence 35567899999988766666777777777777788888776543333333344444333345555443323345667777
Q ss_pred hCCCcE-EE
Q 007634 564 EDKIDI-LV 571 (595)
Q Consensus 564 ~d~idi-lv 571 (595)
+.+|=+ +|
T Consensus 145 ~~~iPvV~i 153 (344)
T 3kjx_A 145 AAGIPVVEI 153 (344)
T ss_dssp HCSSCEEEE
T ss_pred hCCCCEEEE
Confidence 777664 45
No 336
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=27.71 E-value=1.4e+02 Score=27.22 Aligned_cols=83 Identities=12% Similarity=0.088 Sum_probs=42.5
Q ss_pred CCeEEEEecCC-cccchHHHhhhhhhcccCCCceEEEEeeCCcc-CChh-----hHHHHHHhhhcCCceeeCCCCCHHHH
Q 007634 486 RPLVIGYVSPD-YFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVK-ADAK-----TIRFREKVMKKGGIWRDIYGIDEKKV 558 (595)
Q Consensus 486 ~~l~igy~s~d-~~~h~~~~~~~~~~~~~d~~~fe~~~y~~~~~-~d~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (595)
+++||.|+.+. |-.+....++. . .++|.+.-+.++ ...- ...+++.+....=-......+++.++
T Consensus 2 ~~mrIvf~Gt~~fa~~~L~~L~~----~----~~~i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~ 73 (314)
T 1fmt_A 2 ESLRIIFAGTPDFAARHLDALLS----S----GHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQEN 73 (314)
T ss_dssp CCCEEEEEECSHHHHHHHHHHHH----T----TCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSCSHHH
T ss_pred CCCEEEEEecCHHHHHHHHHHHH----C----CCcEEEEEeCCCCccccccccCcCHHHHHHHHcCCcEEecCCCCCHHH
Confidence 35788888654 54443333332 2 367765544432 1110 00122222221111223345567889
Q ss_pred HHHHHhCCCcEEEeCCCCC
Q 007634 559 AAMVREDKIDILVELTGHT 577 (595)
Q Consensus 559 a~~i~~d~idilvdl~g~t 577 (595)
.+.|++.++|++|= .||+
T Consensus 74 ~~~l~~~~~Dliv~-~~y~ 91 (314)
T 1fmt_A 74 QQLVAELQADVMVV-VAYG 91 (314)
T ss_dssp HHHHHHTTCSEEEE-ESCC
T ss_pred HHHHHhcCCCEEEE-eecc
Confidence 99999999998774 3454
No 337
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=27.70 E-value=93 Score=31.94 Aligned_cols=52 Identities=21% Similarity=0.127 Sum_probs=43.3
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHH
Q 007634 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165 (595)
Q Consensus 114 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~a~~~~~l~~ 165 (595)
...+.....|...+..|+|.-|.+....++..+|++..+...++.++..+|.
T Consensus 447 gg~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 447 GGAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3455666778888889999999999999999999999998888888888875
No 338
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.30 E-value=50 Score=24.62 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHh
Q 007634 384 MDAAAEMIEKAIAA 397 (595)
Q Consensus 384 ~~~A~~~~~~al~~ 397 (595)
+++|..+..++|++
T Consensus 19 h~~AF~~Is~AL~~ 32 (116)
T 2dl1_A 19 YKKAFLFVNKGLNT 32 (116)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 44555555555544
No 339
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=25.57 E-value=1.1e+02 Score=27.14 Aligned_cols=89 Identities=9% Similarity=0.147 Sum_probs=51.3
Q ss_pred CCCeEEEEecCC-----cccchHHHhhhhhhcccCCCceEEEEeeCCccCChhhHHHHHHhhhcCCceeeCCCCCHHHHH
Q 007634 485 ERPLVIGYVSPD-----YFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVA 559 (595)
Q Consensus 485 ~~~l~igy~s~d-----~~~h~~~~~~~~~~~~~d~~~fe~~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 559 (595)
++..+||++.++ +.+.-...++.++-+......+.+.++......+.....++.......|...-+....+.+..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~ 85 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSRENDRII 85 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTTCHHH
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCChHHH
Confidence 566789999998 666656667777766666667888877544322222223333333334555544332234667
Q ss_pred HHHHhCCCcEE-EeC
Q 007634 560 AMVREDKIDIL-VEL 573 (595)
Q Consensus 560 ~~i~~d~idil-vdl 573 (595)
+.+.+.+|=++ ||-
T Consensus 86 ~~l~~~~iPvV~~~~ 100 (292)
T 3k4h_A 86 QYLHEQNFPFVLIGK 100 (292)
T ss_dssp HHHHHTTCCEEEESC
T ss_pred HHHHHCCCCEEEECC
Confidence 77777777654 443
No 340
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=25.18 E-value=4.4e+02 Score=24.93 Aligned_cols=58 Identities=9% Similarity=0.043 Sum_probs=35.4
Q ss_pred HHHHHHHHHcc-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHH
Q 007634 353 AVECYQMALSI-----KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------NPTYAEAYNNLGV 410 (595)
Q Consensus 353 A~~~~~~al~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~ 410 (595)
++..|++++.. ...+...|..+|-.+.+.+++.+|+..+..+-.. ..++.+.|..+-.
T Consensus 283 ~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~e 351 (489)
T 4gq4_A 283 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFE 351 (489)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHHH
Confidence 44555555543 2334556667777788888888888887777543 3344555544433
No 341
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=24.61 E-value=1.2e+02 Score=26.89 Aligned_cols=85 Identities=7% Similarity=0.003 Sum_probs=40.0
Q ss_pred CCCeEEEEecCCcccchHHHhhhhhhcccCCCceEEEEe-eCCccCChhhHHHHHHhhhcCCceeeCCCCCHHHHHHHHH
Q 007634 485 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVY-SAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVR 563 (595)
Q Consensus 485 ~~~l~igy~s~d~~~h~~~~~~~~~~~~~d~~~fe~~~y-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~ 563 (595)
++..+||++.+++.+.-...++.++-+......+++.++ ....+.+.....++.......|...-.....+.+..+.+.
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~ 85 (290)
T 3clk_A 6 KSSNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIALTDDNLQLLQ 85 (290)
T ss_dssp --CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC----CHHHHH
T ss_pred ccCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecccCCHHHHHHHH
Confidence 456789999998776555666666666666666888776 4332222222233333333335454332222334555666
Q ss_pred hCCCcE
Q 007634 564 EDKIDI 569 (595)
Q Consensus 564 ~d~idi 569 (595)
+.+|=+
T Consensus 86 ~~~iPv 91 (290)
T 3clk_A 86 SSDVPY 91 (290)
T ss_dssp CC--CE
T ss_pred hCCCCE
Confidence 666653
No 342
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=24.34 E-value=1.2e+02 Score=20.95 Aligned_cols=19 Identities=26% Similarity=0.183 Sum_probs=12.8
Q ss_pred HHHcCCHHHHHHHHHHHHh
Q 007634 412 YRDAGSISLAIDAYEQCLK 430 (595)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~ 430 (595)
....|++++|+.+|..+++
T Consensus 23 ~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 23 LDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 3556777777777777665
No 343
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=24.07 E-value=1.3e+02 Score=26.61 Aligned_cols=87 Identities=7% Similarity=0.024 Sum_probs=44.3
Q ss_pred CCCeEEEEecCC--cccchHHHhhhhhhcccCCCceEEEEeeCCccCChhhHHHHHHhhhcCCceeeCCC-CCHHHHHHH
Q 007634 485 ERPLVIGYVSPD--YFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG-IDEKKVAAM 561 (595)
Q Consensus 485 ~~~l~igy~s~d--~~~h~~~~~~~~~~~~~d~~~fe~~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~ 561 (595)
++..+||++.++ +.+.-...++.++-.......+++.++....+.+.....++.......|...-... .++ +..+.
T Consensus 17 ~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-~~~~~ 95 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSV-DEIDD 95 (296)
T ss_dssp --CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSSSCH-HHHHH
T ss_pred CCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCh-HHHHH
Confidence 456789999988 65544445555655544445577777654322222233344333333344444322 233 45566
Q ss_pred HHh-CCCcE-EEe
Q 007634 562 VRE-DKIDI-LVE 572 (595)
Q Consensus 562 i~~-d~idi-lvd 572 (595)
+.+ .+|=+ +||
T Consensus 96 l~~~~~iPvV~~~ 108 (296)
T 3brq_A 96 IIDAHSQPIMVLN 108 (296)
T ss_dssp HHHTCSSCEEEES
T ss_pred HHhcCCCCEEEEc
Confidence 777 67764 444
No 344
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=23.23 E-value=3.6e+02 Score=23.16 Aligned_cols=49 Identities=16% Similarity=0.242 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHh-----cCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHH
Q 007634 242 ESAIACYERCLA-----VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293 (595)
Q Consensus 242 ~~A~~~~~~al~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 293 (595)
+.|...|+.|++ +.|.+|. .++.++..-...|...++.++|....++++
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPi---rLgLaLN~SVF~yEil~~~~~A~~lAk~af 200 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPI---RLGLALNFSVFYYEILNSPDRACRLAKAAF 200 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHH---HHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456666666654 4566653 234344433344555677777777766665
No 345
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=23.06 E-value=1.9e+02 Score=25.42 Aligned_cols=87 Identities=11% Similarity=0.010 Sum_probs=47.4
Q ss_pred CCeEEEEecCC-c---ccchHHHhhhhhhcccCCCceEEEEeeCCccCChhhHHHHHHhhhcCCceeeCCCCCHHHHHHH
Q 007634 486 RPLVIGYVSPD-Y---FTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAM 561 (595)
Q Consensus 486 ~~l~igy~s~d-~---~~h~~~~~~~~~~~~~d~~~fe~~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 561 (595)
+.-+||++.++ + .+.-...++.++-+......+++.++....+.+.....++.......|...-.....+.+..+.
T Consensus 3 ~s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~ 82 (287)
T 3bbl_A 3 LSFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSINYNDPRVQF 82 (287)
T ss_dssp CCCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCCTTCHHHHH
T ss_pred ceeEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecCCCcHHHHH
Confidence 45689999988 6 5554455666665555555678877654332222333344433333455554433222345666
Q ss_pred HHhCCCcE-EEe
Q 007634 562 VREDKIDI-LVE 572 (595)
Q Consensus 562 i~~d~idi-lvd 572 (595)
+.+.+|=+ +||
T Consensus 83 l~~~~iPvV~~~ 94 (287)
T 3bbl_A 83 LLKQKFPFVAFG 94 (287)
T ss_dssp HHHTTCCEEEES
T ss_pred HHhcCCCEEEEC
Confidence 76667654 444
No 346
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=22.62 E-value=91 Score=27.63 Aligned_cols=86 Identities=9% Similarity=-0.024 Sum_probs=50.0
Q ss_pred CCCeEEEEecCCcccchHHHhhhhhhcccCCCceEEEEeeCCccCChhhHHHHHHhhhcCCceeeCCCCCHHHHHHHHHh
Q 007634 485 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVRE 564 (595)
Q Consensus 485 ~~~l~igy~s~d~~~h~~~~~~~~~~~~~d~~~fe~~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ 564 (595)
++..+||++.+++.+.-...++.++-+......+++.++....+.+.....++.......|...-.......+..+.+.+
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 85 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEGEHDYLRTELP 85 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSSCCHHHHHSSC
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCChHHHHHhhc
Confidence 56678999999877655566677776666666788888875433222332333333333455554333223456666666
Q ss_pred CCCcEE
Q 007634 565 DKIDIL 570 (595)
Q Consensus 565 d~idil 570 (595)
.+|=++
T Consensus 86 ~~iPvV 91 (291)
T 3egc_A 86 KTFPIV 91 (291)
T ss_dssp TTSCEE
T ss_pred cCCCEE
Confidence 666543
No 347
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=22.61 E-value=87 Score=27.42 Aligned_cols=87 Identities=6% Similarity=0.075 Sum_probs=45.6
Q ss_pred CCeEEEEecCCcccchHHHhhhhhhcccCCCceEEEEeeCCccCChhhHHHHHHhhhcCCceeeCCCCCHHHHHHHHHhC
Q 007634 486 RPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVRED 565 (595)
Q Consensus 486 ~~l~igy~s~d~~~h~~~~~~~~~~~~~d~~~fe~~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d 565 (595)
+.-+||++.+++.+.-...++.++-+......+++..+....+.+.....++.......|...-.....+.+..+.+.+.
T Consensus 2 ~s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~~ 81 (275)
T 3d8u_A 2 NAYSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHSQRTHQLLEAS 81 (275)
T ss_dssp --CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESSCCCHHHHHHHHHH
T ss_pred CceEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHhC
Confidence 34579999988765555556666655555556777665543222223333444433334555443322223555666666
Q ss_pred CCcE-EEe
Q 007634 566 KIDI-LVE 572 (595)
Q Consensus 566 ~idi-lvd 572 (595)
+|=+ +||
T Consensus 82 ~iPvV~~~ 89 (275)
T 3d8u_A 82 NTPVLEIA 89 (275)
T ss_dssp TCCEEEES
T ss_pred CCCEEEEe
Confidence 6654 444
No 348
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=22.34 E-value=1.9e+02 Score=25.34 Aligned_cols=86 Identities=7% Similarity=-0.058 Sum_probs=51.5
Q ss_pred CCCeEEEEecCCcccchHHHhhhhhhcccCCCceEEEEeeCCccCChhhHHHHHHhhhcCCceeeCCCCC---HHHHHHH
Q 007634 485 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGID---EKKVAAM 561 (595)
Q Consensus 485 ~~~l~igy~s~d~~~h~~~~~~~~~~~~~d~~~fe~~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~ 561 (595)
.+..+||++.++..+.-...++.++-+......+++.++....+.+.....++.......|...-. +.+ ..+..+.
T Consensus 3 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~-~~~~~~~~~~~~~ 81 (291)
T 3l49_A 3 LEGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQ-LGNLDVLNPWLQK 81 (291)
T ss_dssp CTTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEE-SSCHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEe-CCChhhhHHHHHH
Confidence 455789999998765444556677766666667888888654332223333444333344555533 333 3456677
Q ss_pred HHhCCCcEEE
Q 007634 562 VREDKIDILV 571 (595)
Q Consensus 562 i~~d~idilv 571 (595)
+.+.+|=+++
T Consensus 82 ~~~~~iPvV~ 91 (291)
T 3l49_A 82 INDAGIPLFT 91 (291)
T ss_dssp HHHTTCCEEE
T ss_pred HHHCCCcEEE
Confidence 7777776543
No 349
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=22.26 E-value=84 Score=26.05 Aligned_cols=33 Identities=9% Similarity=0.184 Sum_probs=16.2
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 007634 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGK 88 (595)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 88 (595)
.++.++|.+++|.+.+++....++.+......|
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL 157 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFGDPNSHMPFKSKL 157 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-----CCTTHHHH
T ss_pred HHHHHccchHHHHHHHHHHhcCCCCchHHHHHH
Confidence 345666666666666666666555544433333
No 350
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=22.22 E-value=1.8e+02 Score=25.65 Aligned_cols=88 Identities=10% Similarity=0.066 Sum_probs=47.2
Q ss_pred CCCeEEEEecCCcccchHHHhhhhhhcccCCCceEEEEeeCCccCChhhHHHHHHhhhcCCceeeCCCCCHHHHHHHHHh
Q 007634 485 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVRE 564 (595)
Q Consensus 485 ~~~l~igy~s~d~~~h~~~~~~~~~~~~~d~~~fe~~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ 564 (595)
++...||++.+++.+.-...++.++-+......+++.++....+.+.....++.......|...-...-...+..+.+.+
T Consensus 14 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~ 93 (289)
T 2fep_A 14 KKTTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKR 93 (289)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCCCHHHHHHHHh
Confidence 56678999999876554555666665555555678777654322222233344333333455554432222345556666
Q ss_pred CCCc-EEEe
Q 007634 565 DKID-ILVE 572 (595)
Q Consensus 565 d~id-ilvd 572 (595)
.+|= |+||
T Consensus 94 ~~iPvV~~~ 102 (289)
T 2fep_A 94 SPVPIVLAA 102 (289)
T ss_dssp SSSCEEEES
T ss_pred cCCCEEEEc
Confidence 6765 4444
No 351
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=22.13 E-value=1.2e+02 Score=27.02 Aligned_cols=88 Identities=5% Similarity=-0.102 Sum_probs=50.0
Q ss_pred CCeEEEEecCCcccchHHHhhhhhhcccCCCceEEEEeeCCc--cCChhhHHHHHHhhhcCCceeeCCCCCH--HHHHHH
Q 007634 486 RPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVV--KADAKTIRFREKVMKKGGIWRDIYGIDE--KKVAAM 561 (595)
Q Consensus 486 ~~l~igy~s~d~~~h~~~~~~~~~~~~~d~~~fe~~~y~~~~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~ 561 (595)
.+++||++.++..+.-...++.++-+......+++..+.... +.+.....++.......|...-...-.+ ....+.
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~ 81 (297)
T 3rot_A 2 VRDKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQR 81 (297)
T ss_dssp -CCEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHH
T ss_pred ceEEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHH
Confidence 468999999998555455666666665555668888776431 2222333444444444455543322222 456677
Q ss_pred HHhCCCcE-EEeC
Q 007634 562 VREDKIDI-LVEL 573 (595)
Q Consensus 562 i~~d~idi-lvdl 573 (595)
+.+.+|=+ +||-
T Consensus 82 ~~~~giPvV~~~~ 94 (297)
T 3rot_A 82 ANKLNIPVIAVDT 94 (297)
T ss_dssp HHHHTCCEEEESC
T ss_pred HHHCCCCEEEEcC
Confidence 77777764 4443
No 352
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=21.96 E-value=1.8e+02 Score=20.57 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=7.3
Q ss_pred hCChHHHHHHHHHH
Q 007634 170 AGNTQDGIQKYYEA 183 (595)
Q Consensus 170 ~~~~~~A~~~~~~~ 183 (595)
.|++++|+.+|..+
T Consensus 28 ~g~y~eAl~~Y~~A 41 (93)
T 1wfd_A 28 ESRYQQALVCYQEG 41 (93)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHH
Confidence 35555555555443
No 353
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=21.64 E-value=64 Score=26.28 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=27.0
Q ss_pred CHHHHHHHHHhCCCcEEEeCCC--CCCCChhhhhhcC
Q 007634 554 DEKKVAAMVREDKIDILVELTG--HTANNKLGMMACQ 588 (595)
Q Consensus 554 ~~~~~a~~i~~d~idilvdl~g--~t~~~~~~~~a~r 588 (595)
.+.++...|.+.+||.+|++.. ........++++|
T Consensus 86 G~pqI~d~I~~geIdlVInt~dPl~~~~h~~D~~~IR 122 (178)
T 1vmd_A 86 GDQQIGAMIAEGKIDVLIFFWDPLEPQAHDVDVKALI 122 (178)
T ss_dssp HHHHHHHHHHTTSCCEEEEECCSSSCCTTSCCHHHHH
T ss_pred CCchHHHHHHCCCccEEEEccCccCCCcccccHHHHH
Confidence 4668999999999999998876 4444366766665
No 354
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=21.27 E-value=3.6e+02 Score=22.79 Aligned_cols=83 Identities=12% Similarity=0.031 Sum_probs=43.8
Q ss_pred CCCCeEEEEecCCcccchHHHhhhhhhcccC-CCceEEEEeeCCccCChhhHHHHHHhhhcCCceeeCCCCC--------
Q 007634 484 PERPLVIGYVSPDYFTHSVSYFIEAPLVYHD-YQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGID-------- 554 (595)
Q Consensus 484 ~~~~l~igy~s~d~~~h~~~~~~~~~~~~~d-~~~fe~~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------- 554 (595)
|..+.||+++.|.-. ..+..++.... ...+||.+--..++ ...-++-++ ..=-+..+ ...
T Consensus 9 ~~~~~ri~vl~SG~g-----snl~all~~~~~~~~~eI~~Vis~~~-a~~~~~A~~----~gIp~~~~-~~~~~~~r~~~ 77 (215)
T 3da8_A 9 PSAPARLVVLASGTG-----SLLRSLLDAAVGDYPARVVAVGVDRE-CRAAEIAAE----ASVPVFTV-RLADHPSRDAW 77 (215)
T ss_dssp CCSSEEEEEEESSCC-----HHHHHHHHHSSTTCSEEEEEEEESSC-CHHHHHHHH----TTCCEEEC-CGGGSSSHHHH
T ss_pred CCCCcEEEEEEeCCh-----HHHHHHHHHHhccCCCeEEEEEeCCc-hHHHHHHHH----cCCCEEEe-Ccccccchhhh
Confidence 466789998855432 23334443332 23468866544442 222222221 11112222 211
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCCC
Q 007634 555 EKKVAAMVREDKIDILVELTGHTA 578 (595)
Q Consensus 555 ~~~~a~~i~~d~idilvdl~g~t~ 578 (595)
+.++.+.|++.++|++| +.||+.
T Consensus 78 d~~~~~~l~~~~~Dliv-lagy~~ 100 (215)
T 3da8_A 78 DVAITAATAAHEPDLVV-SAGFMR 100 (215)
T ss_dssp HHHHHHHHHTTCCSEEE-EEECCS
T ss_pred hHHHHHHHHhhCCCEEE-EcCchh
Confidence 56889999999999877 455554
No 355
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=20.73 E-value=4.3e+02 Score=23.11 Aligned_cols=49 Identities=16% Similarity=0.242 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHh-----cCCCcHHHHhhHHHHHHHhhhhhhhcCCHHHHHHHHHHHH
Q 007634 242 ESAIACYERCLA-----VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293 (595)
Q Consensus 242 ~~A~~~~~~al~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 293 (595)
+.|...|+.|.+ +.|.+|. .++.++..--..|...++.++|....++++
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPi---rLGLaLNfSVFyYEIln~p~~Ac~LAk~AF 226 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPI---RLGLALNFSVFYYEILNSPDRACRLAKAAF 226 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHH---HHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456666766654 4566653 233344333344555677777777766664
No 356
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=20.53 E-value=1.4e+02 Score=26.69 Aligned_cols=85 Identities=13% Similarity=-0.024 Sum_probs=47.8
Q ss_pred CCCeEEEEecCCcccchHHHhhhhhhcccCCCceEEEEeeCCccCChhhHHHHHHhhhcCCceeeCCCCCHHH-HHHHHH
Q 007634 485 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKK-VAAMVR 563 (595)
Q Consensus 485 ~~~l~igy~s~d~~~h~~~~~~~~~~~~~d~~~fe~~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~i~ 563 (595)
++.-.||++.+++.+.-...++.++-+......+++.++....+.+.....++.......|...-.....+.+ ..+.+.
T Consensus 13 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~l~ 92 (303)
T 3kke_A 13 SRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFDDDMLAAVL 92 (303)
T ss_dssp ----CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCCHHHHHHHH
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCcHHHHHHHh
Confidence 4556799999988766666677777666666678888876554333333344443333345555443322223 556666
Q ss_pred hCCCcEE
Q 007634 564 EDKIDIL 570 (595)
Q Consensus 564 ~d~idil 570 (595)
+ +|=++
T Consensus 93 ~-~iPvV 98 (303)
T 3kke_A 93 E-GVPAV 98 (303)
T ss_dssp T-TSCEE
T ss_pred C-CCCEE
Confidence 6 66543
No 357
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=20.50 E-value=9.4e+02 Score=27.04 Aligned_cols=31 Identities=10% Similarity=-0.028 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 007634 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYG 311 (595)
Q Consensus 281 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 311 (595)
+.+++.++|+++++.+|++..++..+-..+.
T Consensus 1122 ~~~~~~~~~~~l~~~~P~~l~~~~~~l~~l~ 1152 (1354)
T 3lxu_X 1122 ELEMAEKIYNDVVAAHPKHLQANLLLIQNIE 1152 (1354)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCccHHHHHHHHHhhh
Confidence 5678889999999999999887776665544
No 358
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=20.47 E-value=1.3e+02 Score=21.96 Aligned_cols=29 Identities=14% Similarity=0.074 Sum_probs=20.2
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVL 75 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l 75 (595)
+++.....|....+.|+|++|.+.++++-
T Consensus 17 ~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~ 45 (103)
T 1wcr_A 17 QARSLAYAALKQAKQGDFAAAKAMMDQSR 45 (103)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45666667777777777777777777653
No 359
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=20.41 E-value=1.3e+02 Score=22.06 Aligned_cols=29 Identities=17% Similarity=0.039 Sum_probs=19.8
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007634 47 EGKDALSYANILRSRNKFVDALALYEIVL 75 (595)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l 75 (595)
+++.....|....+.|+|++|.+.++++-
T Consensus 19 ~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~ 47 (105)
T 2e2a_A 19 DARSKLLEALKAAENGDFAKADSLVVEAG 47 (105)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45566666777777777777777776653
No 360
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=20.37 E-value=2.3e+02 Score=25.73 Aligned_cols=83 Identities=6% Similarity=0.080 Sum_probs=43.2
Q ss_pred CeEEEEecCC-cccchHHHhhhhhhcccCCCceEEEEeeCCcc-CChh-----hHHHHHHhhhcCCceeeCCCCCHHHHH
Q 007634 487 PLVIGYVSPD-YFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVK-ADAK-----TIRFREKVMKKGGIWRDIYGIDEKKVA 559 (595)
Q Consensus 487 ~l~igy~s~d-~~~h~~~~~~~~~~~~~d~~~fe~~~y~~~~~-~d~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~a 559 (595)
++||.|+... |-.+....+ +.. .++|.+.-+.|+ ...- ..-+++.+....=-+.....+++.++.
T Consensus 7 ~mrivf~Gt~~fa~~~L~~L----~~~----~~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~ 78 (318)
T 3q0i_A 7 SLRIVFAGTPDFAARHLAAL----LSS----EHEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVYQPENFKSDESK 78 (318)
T ss_dssp CCEEEEECCSHHHHHHHHHH----HTS----SSEEEEEECCCC---------CCCHHHHHHHHTTCCEECCSCSCSHHHH
T ss_pred CCEEEEEecCHHHHHHHHHH----HHC----CCcEEEEEcCCCCcccccccCCCCHHHHHHHHcCCCEEccCcCCCHHHH
Confidence 5888888665 544433333 322 367765544332 1110 001222222221112333456677899
Q ss_pred HHHHhCCCcEEEeCCCCCC
Q 007634 560 AMVREDKIDILVELTGHTA 578 (595)
Q Consensus 560 ~~i~~d~idilvdl~g~t~ 578 (595)
+.+++.++|++| +.|++.
T Consensus 79 ~~l~~~~~Dliv-~~~y~~ 96 (318)
T 3q0i_A 79 QQLAALNADLMV-VVAYGL 96 (318)
T ss_dssp HHHHTTCCSEEE-ESSCCS
T ss_pred HHHHhcCCCEEE-EeCccc
Confidence 999999999988 455543
No 361
>1cq4_A Protein (serine proteinase inhibitor 2); serine protease inhibitor, polyglutamine insertion mutant, subtilisin- chymotrypsin inhibitor-2; 1.80A {Hordeum vulgare} SCOP: d.40.1.1
Probab=20.29 E-value=52 Score=19.87 Aligned_cols=25 Identities=16% Similarity=0.403 Sum_probs=22.8
Q ss_pred CceeeCCCCCHHHHHHHHHhCCCcE
Q 007634 545 GIWRDIYGIDEKKVAAMVREDKIDI 569 (595)
Q Consensus 545 ~~~~~~~~~~~~~~a~~i~~d~idi 569 (595)
..|-++-|.+..+++..|..++.|+
T Consensus 3 ~sWPELVG~~~~~A~~~I~~e~p~v 27 (47)
T 1cq4_A 3 TEWPELVGKSVEEAKKVILQDKPEA 27 (47)
T ss_dssp CBCGGGTTSBHHHHHHHHHHHCTTC
T ss_pred cCChhhcCccHHHHHHHHHHHCCCC
Confidence 4699999999999999999999994
No 362
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=20.08 E-value=4e+02 Score=22.60 Aligned_cols=49 Identities=10% Similarity=0.186 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007634 386 AAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (595)
Q Consensus 386 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (595)
++...|.-.... .-..+..|...|..+...|++.+|.+.|+..++..-.
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 444555555443 4455777888888888888888888888888886543
No 363
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=20.00 E-value=1.7e+02 Score=26.46 Aligned_cols=87 Identities=11% Similarity=0.152 Sum_probs=46.9
Q ss_pred CCCeEEEEecCCcccchHHHhhhhhhcccCCCceEEEEeeCCccCChhhHHHHHHhhhcCCceeeCCC-CCHHHHHHHHH
Q 007634 485 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG-IDEKKVAAMVR 563 (595)
Q Consensus 485 ~~~l~igy~s~d~~~h~~~~~~~~~~~~~d~~~fe~~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~i~ 563 (595)
++..+||++.+++.+.-...++.++-.......+.+.++....+.+.....++.......|...-... .++ +..+.+.
T Consensus 61 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~l~ 139 (332)
T 2o20_A 61 KRTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLDE-KIRTSLK 139 (332)
T ss_dssp -CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECSSCCCH-HHHHHHH
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHHHhCCCCEEEEeCCCCCH-HHHHHHH
Confidence 45678999999876554455666665555555678877654332222223334333333455554432 343 4445555
Q ss_pred hCCCc-EEEe
Q 007634 564 EDKID-ILVE 572 (595)
Q Consensus 564 ~d~id-ilvd 572 (595)
+.+|= |+||
T Consensus 140 ~~~iPvV~~~ 149 (332)
T 2o20_A 140 NSRTPVVLVG 149 (332)
T ss_dssp HHCCCEEEES
T ss_pred hCCCCEEEEc
Confidence 55555 4444
Done!