Query 007635
Match_columns 595
No_of_seqs 285 out of 2208
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 13:17:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007635.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007635hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00044 multi-copper oxidase- 100.0 1E-118 3E-123 976.4 61.6 545 22-567 19-568 (596)
2 PLN02991 oxidoreductase 100.0 2E-115 5E-120 946.2 59.9 523 14-558 12-535 (543)
3 PLN02354 copper ion binding / 100.0 5E-115 1E-119 949.4 61.3 545 1-564 1-549 (552)
4 PLN02792 oxidoreductase 100.0 6E-114 1E-118 936.4 59.3 515 25-558 11-528 (536)
5 PLN02835 oxidoreductase 100.0 2E-113 3E-118 936.6 60.7 515 22-558 21-536 (539)
6 PLN02168 copper ion binding / 100.0 2E-113 4E-118 933.6 59.3 524 15-556 11-544 (545)
7 KOG1263 Multicopper oxidases [ 100.0 3E-111 7E-116 908.4 56.9 536 14-560 12-562 (563)
8 TIGR03389 laccase laccase, pla 100.0 2E-102 4E-107 857.2 58.6 510 29-553 2-539 (539)
9 PLN02191 L-ascorbate oxidase 100.0 7E-102 1E-106 852.2 58.2 510 28-560 21-568 (574)
10 PLN02604 oxidoreductase 100.0 3E-101 7E-106 848.7 59.2 527 10-557 4-565 (566)
11 TIGR03388 ascorbase L-ascorbat 100.0 2.5E-99 5E-104 831.6 56.5 502 30-554 1-539 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 4.6E-97 1E-101 811.3 53.6 491 31-538 9-536 (538)
13 TIGR01480 copper_res_A copper- 100.0 1.5E-78 3.2E-83 664.1 50.3 429 31-534 46-587 (587)
14 PRK10965 multicopper oxidase; 100.0 2.5E-74 5.5E-79 626.5 44.9 416 30-534 45-523 (523)
15 PRK10883 FtsI repressor; Provi 100.0 3E-72 6.5E-77 605.3 41.8 404 32-536 47-470 (471)
16 COG2132 SufI Putative multicop 100.0 7E-58 1.5E-62 495.8 39.9 400 43-534 46-449 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 4.4E-48 9.5E-53 396.5 26.6 265 25-318 22-299 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 2.5E-37 5.3E-42 271.4 10.7 115 36-150 1-116 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 2.4E-29 5.2E-34 229.2 11.5 109 427-535 28-136 (138)
20 PF00394 Cu-oxidase: Multicopp 100.0 2.9E-28 6.3E-33 227.2 14.8 153 162-316 1-158 (159)
21 TIGR03095 rusti_cyanin rusticy 99.8 3.6E-19 7.8E-24 162.2 11.4 104 43-148 35-148 (148)
22 TIGR01480 copper_res_A copper- 99.6 8.3E-16 1.8E-20 169.6 11.3 100 47-148 483-587 (587)
23 TIGR02376 Cu_nitrite_red nitri 99.5 1.2E-12 2.6E-17 134.8 20.3 244 192-534 47-296 (311)
24 TIGR03096 nitroso_cyanin nitro 99.5 4E-13 8.6E-18 118.4 12.1 105 15-134 9-121 (135)
25 TIGR03389 laccase laccase, pla 99.0 5E-08 1.1E-12 108.4 22.0 239 193-519 23-264 (539)
26 PLN02835 oxidoreductase 99.0 3.9E-08 8.5E-13 108.6 20.7 220 193-516 49-276 (539)
27 PRK10965 multicopper oxidase; 99.0 3.1E-08 6.7E-13 109.0 19.4 231 50-296 213-509 (523)
28 PLN02354 copper ion binding / 98.9 9.9E-08 2.1E-12 105.6 20.5 229 193-518 47-283 (552)
29 PLN02792 oxidoreductase 98.9 1.2E-07 2.6E-12 104.5 20.5 224 193-516 36-267 (536)
30 PLN02991 oxidoreductase 98.9 1.2E-07 2.5E-12 104.5 19.6 218 193-513 48-273 (543)
31 PLN02168 copper ion binding / 98.8 2.6E-07 5.6E-12 102.0 21.0 220 193-509 46-267 (545)
32 PF07731 Cu-oxidase_2: Multico 98.8 4E-09 8.7E-14 95.8 5.5 89 60-149 33-136 (138)
33 PRK10883 FtsI repressor; Provi 98.8 2.1E-07 4.5E-12 101.5 18.9 221 48-296 208-454 (471)
34 PLN00044 multi-copper oxidase- 98.8 4.1E-07 8.8E-12 101.0 20.0 233 193-514 49-291 (596)
35 PRK02710 plastocyanin; Provisi 98.7 2.3E-07 4.9E-12 81.9 11.8 74 60-148 46-119 (119)
36 TIGR03390 ascorbOXfungal L-asc 98.7 2E-06 4.3E-11 95.5 21.8 240 193-517 28-281 (538)
37 TIGR03388 ascorbase L-ascorbat 98.7 2.4E-06 5.3E-11 95.0 22.0 252 193-517 21-279 (541)
38 PLN02604 oxidoreductase 98.6 5.2E-08 1.1E-12 108.7 7.7 89 435-537 57-146 (566)
39 COG2132 SufI Putative multicop 98.6 8.4E-07 1.8E-11 96.8 16.8 231 46-296 186-435 (451)
40 PLN02191 L-ascorbate oxidase 98.6 4E-06 8.7E-11 93.6 21.2 254 193-516 43-301 (574)
41 PF13473 Cupredoxin_1: Cupredo 98.5 1.4E-07 3E-12 81.3 6.2 74 57-147 31-104 (104)
42 PF07732 Cu-oxidase_3: Multico 98.5 2.6E-07 5.6E-12 81.2 7.2 88 433-536 26-116 (117)
43 KOG1263 Multicopper oxidases [ 98.4 2.4E-05 5.3E-10 86.2 20.8 228 193-518 48-286 (563)
44 TIGR02656 cyanin_plasto plasto 98.3 2.1E-06 4.6E-11 73.2 8.2 84 58-148 14-99 (99)
45 PF00127 Copper-bind: Copper b 98.1 4.4E-06 9.5E-11 71.3 5.7 77 60-148 16-99 (99)
46 PF00394 Cu-oxidase: Multicopp 98.1 1.6E-05 3.5E-10 74.0 9.2 93 432-535 59-157 (159)
47 TIGR02657 amicyanin amicyanin. 97.9 6.5E-05 1.4E-09 61.8 8.3 74 60-148 10-83 (83)
48 PRK02888 nitrous-oxide reducta 97.8 7.9E-05 1.7E-09 81.9 9.8 97 42-150 534-635 (635)
49 PF06525 SoxE: Sulfocyanin (So 97.8 0.00025 5.3E-09 66.7 10.8 100 51-151 75-189 (196)
50 TIGR03095 rusti_cyanin rusticy 97.6 0.00018 3.8E-09 65.9 7.9 89 433-534 52-148 (148)
51 TIGR02375 pseudoazurin pseudoa 97.5 0.00039 8.5E-09 60.7 8.0 76 60-151 14-90 (116)
52 TIGR02656 cyanin_plasto plasto 97.4 0.00053 1.1E-08 58.4 7.7 83 433-534 17-99 (99)
53 TIGR03094 sulfo_cyanin sulfocy 97.4 0.0022 4.9E-08 59.0 11.9 96 52-151 75-188 (195)
54 TIGR03096 nitroso_cyanin nitro 97.3 0.001 2.3E-08 59.1 7.7 59 434-519 62-120 (135)
55 COG3794 PetE Plastocyanin [Ene 97.2 0.0012 2.5E-08 58.4 7.6 75 61-149 54-128 (128)
56 TIGR03102 halo_cynanin halocya 97.1 0.0021 4.6E-08 56.0 8.2 76 58-148 39-115 (115)
57 PF13473 Cupredoxin_1: Cupredo 96.7 0.007 1.5E-07 51.9 7.8 63 433-524 35-97 (104)
58 PRK02710 plastocyanin; Provisi 96.0 0.032 7E-07 49.1 8.0 72 434-534 48-119 (119)
59 PRK02888 nitrous-oxide reducta 96.0 0.028 6.1E-07 62.3 9.1 75 433-534 555-633 (635)
60 PF00127 Copper-bind: Copper b 95.8 0.067 1.5E-06 45.4 8.9 83 433-534 17-99 (99)
61 PRK10378 inactive ferrous ion 94.7 0.35 7.6E-06 50.9 11.8 79 56-151 39-119 (375)
62 TIGR02657 amicyanin amicyanin. 94.5 0.16 3.5E-06 41.5 7.2 72 433-533 11-82 (83)
63 TIGR02375 pseudoazurin pseudoa 94.1 0.26 5.7E-06 43.1 8.0 77 433-538 15-91 (116)
64 PF00116 COX2: Cytochrome C ox 93.9 0.28 6E-06 43.3 7.8 74 60-147 45-119 (120)
65 PF06525 SoxE: Sulfocyanin (So 93.1 0.89 1.9E-05 43.1 10.1 88 193-295 74-171 (196)
66 TIGR02866 CoxB cytochrome c ox 93.0 0.72 1.6E-05 44.6 9.8 78 60-151 116-194 (201)
67 COG4454 Uncharacterized copper 92.7 1 2.2E-05 41.0 9.4 89 57-149 59-158 (158)
68 TIGR02695 azurin azurin. Azuri 92.5 0.5 1.1E-05 41.5 7.0 84 60-146 15-124 (125)
69 PF00116 COX2: Cytochrome C ox 91.0 2.7 5.9E-05 37.0 10.3 73 433-533 46-119 (120)
70 TIGR03079 CH4_NH3mon_ox_B meth 90.8 1.9 4.1E-05 44.6 10.1 62 55-122 276-354 (399)
71 TIGR02866 CoxB cytochrome c ox 90.6 0.99 2.1E-05 43.6 7.8 77 433-537 117-194 (201)
72 TIGR03102 halo_cynanin halocya 90.5 1.9 4.2E-05 37.6 8.7 73 434-534 43-115 (115)
73 COG4454 Uncharacterized copper 90.2 1.6 3.5E-05 39.7 8.1 93 435-534 65-157 (158)
74 COG1622 CyoA Heme/copper-type 86.8 1.7 3.7E-05 43.2 6.6 78 60-151 136-214 (247)
75 COG1622 CyoA Heme/copper-type 84.7 3.7 8E-05 40.9 7.7 78 433-538 137-215 (247)
76 TIGR02695 azurin azurin. Azuri 84.3 4.1 8.9E-05 35.8 6.9 80 216-295 15-112 (125)
77 COG3794 PetE Plastocyanin [Ene 82.2 6.7 0.00014 34.9 7.5 73 434-534 55-127 (128)
78 COG4263 NosZ Nitrous oxide red 76.0 3.7 7.9E-05 43.6 4.5 77 62-148 559-636 (637)
79 PTZ00047 cytochrome c oxidase 75.6 13 0.00028 34.3 7.5 77 433-537 73-150 (162)
80 PF12690 BsuPI: Intracellular 74.5 26 0.00057 28.5 8.4 65 227-293 4-82 (82)
81 PF12690 BsuPI: Intracellular 73.5 18 0.00038 29.5 7.1 58 61-129 16-80 (82)
82 PF04744 Monooxygenase_B: Mono 73.5 14 0.0003 38.5 7.9 70 47-122 249-335 (381)
83 MTH00047 COX2 cytochrome c oxi 72.8 25 0.00054 33.7 9.1 77 433-537 116-193 (194)
84 MTH00140 COX2 cytochrome c oxi 72.2 14 0.00031 36.4 7.5 77 433-537 140-217 (228)
85 TIGR01433 CyoA cytochrome o ub 68.7 14 0.00031 36.3 6.7 77 433-537 139-216 (226)
86 TIGR03094 sulfo_cyanin sulfocy 65.7 89 0.0019 29.5 10.6 95 434-535 86-186 (195)
87 PF07705 CARDB: CARDB; InterP 64.3 68 0.0015 26.2 9.3 68 220-297 14-85 (101)
88 TIGR01432 QOXA cytochrome aa3 61.8 23 0.0005 34.6 6.6 78 433-538 130-208 (217)
89 MTH00140 COX2 cytochrome c oxi 59.0 1.6E+02 0.0034 29.0 12.0 77 60-150 139-216 (228)
90 MTH00129 COX2 cytochrome c oxi 57.9 32 0.0007 33.9 6.9 77 433-537 140-217 (230)
91 MTH00023 COX2 cytochrome c oxi 54.1 51 0.0011 32.7 7.7 77 433-537 151-228 (240)
92 MTH00008 COX2 cytochrome c oxi 51.2 57 0.0012 32.1 7.4 77 433-537 140-217 (228)
93 PF04151 PPC: Bacterial pre-pe 50.8 71 0.0015 24.7 6.6 20 217-236 5-24 (70)
94 PF10633 NPCBM_assoc: NPCBM-as 49.1 76 0.0017 25.1 6.7 67 221-295 1-75 (78)
95 PRK05461 apaG CO2+/MG2+ efflux 48.4 24 0.00052 31.4 3.8 20 98-117 66-85 (127)
96 PF05506 DUF756: Domain of unk 47.6 87 0.0019 25.6 7.0 57 59-121 7-66 (89)
97 PF01835 A2M_N: MG2 domain; I 46.6 42 0.00092 27.9 5.0 71 221-296 11-86 (99)
98 PF14344 DUF4397: Domain of un 46.5 1.9E+02 0.0041 24.9 10.4 21 228-248 3-24 (122)
99 MTH00038 COX2 cytochrome c oxi 46.2 76 0.0017 31.3 7.4 77 433-537 140-217 (229)
100 MTH00098 COX2 cytochrome c oxi 46.1 79 0.0017 31.1 7.5 77 433-537 140-217 (227)
101 PF07172 GRP: Glycine rich pro 45.6 18 0.00038 30.5 2.4 10 1-10 1-10 (95)
102 PRK10378 inactive ferrous ion 45.5 89 0.0019 33.2 8.1 64 214-294 41-104 (375)
103 PF07691 PA14: PA14 domain; I 45.4 1.1E+02 0.0023 27.1 7.9 64 218-286 53-123 (145)
104 MTH00185 COX2 cytochrome c oxi 45.2 89 0.0019 30.8 7.7 77 433-537 140-217 (230)
105 PRK13254 cytochrome c-type bio 43.1 36 0.00077 31.1 4.2 67 31-102 34-101 (148)
106 PF05938 Self-incomp_S1: Plant 40.8 73 0.0016 27.2 5.7 69 72-149 2-70 (110)
107 MTH00117 COX2 cytochrome c oxi 40.7 1.1E+02 0.0023 30.2 7.5 77 433-537 140-217 (227)
108 smart00758 PA14 domain in bact 40.6 1.9E+02 0.0042 25.3 8.7 62 218-284 51-113 (136)
109 MTH00051 COX2 cytochrome c oxi 38.1 1.2E+02 0.0026 30.0 7.5 77 433-537 144-221 (234)
110 MTH00076 COX2 cytochrome c oxi 38.0 1.1E+02 0.0024 30.1 7.1 77 433-537 140-217 (228)
111 PF14874 PapD-like: Flagellar- 37.8 2.2E+02 0.0048 23.5 8.2 64 220-291 15-82 (102)
112 COG2967 ApaG Uncharacterized p 37.7 35 0.00076 29.6 3.0 55 73-127 34-96 (126)
113 PF04379 DUF525: Protein of un 37.3 78 0.0017 26.3 5.0 49 226-277 15-67 (90)
114 PRK10525 cytochrome o ubiquino 36.5 82 0.0018 32.6 6.1 74 433-534 151-225 (315)
115 PF04744 Monooxygenase_B: Mono 35.6 22 0.00048 37.1 1.8 54 96-149 70-128 (381)
116 cd00918 Der-p2_like Several gr 35.5 1.1E+02 0.0025 26.7 6.1 62 60-121 19-88 (120)
117 MTH00047 COX2 cytochrome c oxi 35.3 4.1E+02 0.0089 25.4 12.5 76 62-151 117-193 (194)
118 MTH00154 COX2 cytochrome c oxi 34.8 1.5E+02 0.0031 29.3 7.4 77 433-537 140-217 (227)
119 KOG1094 Discoidin domain recep 34.6 2.2E+02 0.0047 32.2 9.1 35 482-519 317-355 (807)
120 MTH00168 COX2 cytochrome c oxi 33.8 1.2E+02 0.0027 29.7 6.7 77 433-537 140-217 (225)
121 PF11142 DUF2917: Protein of u 33.6 1.4E+02 0.0029 23.0 5.5 46 219-276 2-47 (63)
122 COG1188 Ribosome-associated he 32.3 37 0.0008 28.7 2.3 29 52-80 36-64 (100)
123 cd00916 Npc2_like Niemann-Pick 31.9 1.6E+02 0.0034 25.8 6.5 18 104-121 75-92 (123)
124 MTH00027 COX2 cytochrome c oxi 30.4 1.4E+02 0.0031 30.0 6.6 77 433-537 174-251 (262)
125 COG3354 FlaG Putative archaeal 30.0 1.5E+02 0.0032 26.9 5.7 54 225-282 70-131 (154)
126 MTH00080 COX2 cytochrome c oxi 29.7 1.9E+02 0.0041 28.6 7.2 77 433-537 143-220 (231)
127 MTH00139 COX2 cytochrome c oxi 29.6 1.7E+02 0.0036 28.8 6.9 77 433-537 140-217 (226)
128 PLN03148 Blue copper-like prot 29.4 2.1E+02 0.0046 26.7 7.0 30 505-535 90-119 (167)
129 PF11614 FixG_C: IG-like fold 28.0 2.2E+02 0.0048 24.4 6.8 48 226-282 34-83 (118)
130 PF10989 DUF2808: Protein of u 27.8 65 0.0014 29.2 3.4 29 105-133 96-127 (146)
131 PRK05461 apaG CO2+/MG2+ efflux 27.5 1.4E+02 0.003 26.6 5.3 49 226-277 32-84 (127)
132 PF10794 DUF2606: Protein of u 25.4 1.2E+02 0.0027 26.3 4.3 59 6-64 16-76 (131)
133 TIGR01433 CyoA cytochrome o ub 24.3 1.7E+02 0.0037 28.8 5.8 59 217-295 139-197 (226)
134 COG1470 Predicted membrane pro 21.7 5.5E+02 0.012 28.1 9.2 72 217-296 389-468 (513)
135 PF10989 DUF2808: Protein of u 21.4 94 0.002 28.2 3.2 26 495-520 99-128 (146)
136 PRK13202 ureB urease subunit b 21.3 3E+02 0.0066 23.4 5.8 59 62-120 12-84 (104)
137 PF09394 Inhibitor_I42: Chagas 20.9 4.5E+02 0.0097 21.2 8.6 80 435-528 1-82 (92)
138 COG4263 NosZ Nitrous oxide red 20.7 2.8E+02 0.006 30.1 6.6 28 493-520 594-625 (637)
139 PF14392 zf-CCHC_4: Zinc knuck 20.6 1.6E+02 0.0035 21.1 3.7 41 484-524 3-44 (49)
140 PF14451 Ub-Mut7C: Mut7-C ubiq 20.1 98 0.0021 25.1 2.6 31 44-74 41-74 (81)
141 KOG4387 Ornithine decarboxylas 20.0 45 0.00097 31.2 0.7 29 63-91 71-99 (191)
No 1
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=1.3e-118 Score=976.43 Aligned_cols=545 Identities=64% Similarity=1.140 Sum_probs=448.8
Q ss_pred hcccccCceEEEEEEEEEEEeCCCC--eeEEEEEECCCCCCceEEecCCCEEEEEEEeCCCCCceeecCCCccCCCCCCC
Q 007635 22 SLCFAEDDTIFYDFKVSYITASPLG--VPQQVIAINGKFPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQD 99 (595)
Q Consensus 22 ~~~~~~~~~~~~~~~v~~~~~~~dG--~~~~~~~~Ng~~PGP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~D 99 (595)
+.+.|++++|+|+|+|++..++||| ..+++++||||+|||+|++++||+|+|+|+|+|+++++|||||++|++++|+|
T Consensus 19 ~~~~~~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~D 98 (596)
T PLN00044 19 APAGAGDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQD 98 (596)
T ss_pred CccccCCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECCccCCCCcccc
Confidence 3456778899999999999999999 55689999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCCCeEEEEEEecCceeeeEEeccchhhhccCccccEEEccCCCCCCCCCCCC-CceeEeeeecccccHHH
Q 007635 100 GVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNRKVIPIPFDQPE-GDIIFLIGDWYTRNHTA 178 (595)
Q Consensus 100 Gv~~tq~~I~PG~~~tY~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d-~e~~l~l~d~~~~~~~~ 178 (595)
|+++|||||+||++|+|+|++++|+||||||||++.|+++||+|+|||++++..+.||..++ +|++|+|+||++++...
T Consensus 99 Gv~~TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~~~~~~~ 178 (596)
T PLN00044 99 GVGGTNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADWYARDHRA 178 (596)
T ss_pred CCCCCcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceEEEecccccCCHHH
Confidence 99889999999999999999988999999999999999999999999999876666765434 79999999999998777
Q ss_pred HHHHHhcCCCCCCCceEEEccCCCCCCCCccCCCCCcceEEEecCCCEEEEEEEEcCCCceEEEEEeCccceeeeccCcc
Q 007635 179 LRTALDSGKDLDMPDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHY 258 (595)
Q Consensus 179 ~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi~~DG~~ 258 (595)
+...+..+...+.+|.++|||++.+.++|+.....+..+.++|++||+|||||||++..+.+.|+|+||+|+|||+||.+
T Consensus 179 ~~~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~DG~~ 258 (596)
T PLN00044 179 LRRALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAEGSY 258 (596)
T ss_pred HHHHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeCCcc
Confidence 66566666555678999999999876666533333445789999999999999999999999999999999999999999
Q ss_pred ccceeecEEEEcCCcEEEEEEEcCCCCCcceEEEEeeecccccccccceeEEEEEecCCCCCCCCCCCCCCCC-CCcccc
Q 007635 259 TSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGAASGPLPEAPSD-IYNQWA 337 (595)
Q Consensus 259 ~~p~~~~~l~i~pG~R~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~~p~-~~~~~~ 337 (595)
++|..+++|.|++||||||+|+++|.++++|||++...+.....+....+.|||+|.++....+.+.|. .|. .++..+
T Consensus 259 v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~~~~~~~~~AIl~Y~~~~~~~~~~~P~-~p~~~~d~~~ 337 (596)
T PLN00044 259 TSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAAVVDKLTGVAILHYSNSQGPASGPLPD-APDDQYDTAF 337 (596)
T ss_pred cCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCccccCcceeEEEEECCCCCCCCCCCCC-CCcccCCchh
Confidence 999999999999999999999999876448999987643221113456788999998865322222343 231 233333
Q ss_pred ccCccccccccCCCCCCCCCCCCCCCcCccceeeEEEEecCCCcccCCeEEEEecCeeccCCCChhhhhhcccCCCcccC
Q 007635 338 AMTQPRSIRQNTSASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPETPIRLADKYNVKGAYKL 417 (595)
Q Consensus 338 ~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~ 417 (595)
+.++.+.++++.......++|+++.++...++.+.+.+........+|+.+|+|||++|..|++|+|++.+++.+++|..
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~ 417 (596)
T PLN00044 338 SINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVFKL 417 (596)
T ss_pred hhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccccccccCCeEEEEECcccCCCCCCcchhhhhccCCCcccC
Confidence 33334455544454444556665544433444443333221111223578999999999999999998888888888887
Q ss_pred CCCCCCCCCCCCCceeeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECC
Q 007635 418 DFPNKPLTRPPRTDRSLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYP 497 (595)
Q Consensus 418 ~~~~~p~~~~~~~~~~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p 497 (595)
++++.|........+.++.+++|++|||+|+|.....||||||||+|+||++|.|.|+++.+..||++||++|||+.|++
T Consensus 418 ~fp~~pp~~~~~~~t~v~~~~~n~~VeiV~qn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~ 497 (596)
T PLN00044 418 DFPNHPMNRLPKLDTSIINGTYKGFMEIIFQNNATNVQSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFP 497 (596)
T ss_pred CCCCCCCccccccCceEEEcCCCCEEEEEEeCCCCCCCCeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCC
Confidence 77776654445557899999999999999999877899999999999999999999998878889999999999999999
Q ss_pred CcEEEEEEEeCCceeeeeeeccccceeccceeEEEEeCCCCC-CCCCCCCCCCcccccccccCcccccccc
Q 007635 498 GAWTAILVSLDNVGVWNLRVENLDRWYLGQETYMKIVNPEEN-GDTEMGPPDNVLYCGALQSKQKAQKRHH 567 (595)
Q Consensus 498 ~g~~~Irf~adNpG~W~~HCHil~h~~~Gm~~~~~V~~~~~~-~~~~~~~P~~~~~cg~~~~~~~~~~~~~ 567 (595)
+||++|||++||||+|+||||++.|||.||+++|.|.++.+. .+++.++|++.+.||..+++.+.+...+
T Consensus 498 ~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~pP~~~~~Cg~~~~~~~~~~~~~ 568 (596)
T PLN00044 498 GAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLPIPDNAIFCGALSSLQKEQSHRF 568 (596)
T ss_pred CCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccCCCcccCcccccccCCCCCCCcc
Confidence 999999999999999999999999999999999999977654 4566889999999999988777776543
No 2
>PLN02991 oxidoreductase
Probab=100.00 E-value=2.3e-115 Score=946.20 Aligned_cols=523 Identities=50% Similarity=0.885 Sum_probs=438.2
Q ss_pred HHHHHHHhhcccccCceEEEEEEEEEEEeCCCCeeEEEEEECCCCCCceEEecCCCEEEEEEEeCCCCCceeecCCCccC
Q 007635 14 PIHIALFSSLCFAEDDTIFYDFKVSYITASPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMR 93 (595)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~dG~~~~~~~~Ng~~PGP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~ 93 (595)
+|.+..|+.+..+++++++|+|+|++..+++||++|++++|||++|||+|++++||+|+|+|+|+|+++++|||||++|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~ 91 (543)
T PLN02991 12 ILGLLFLISFVAAEDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNW 91 (543)
T ss_pred HHHHHHHHhhhhccCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccC
Confidence 34444444556667789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccCCCCeEEEEEEecCceeeeEEeccchhhhccCccccEEEccCCCCCCCCCCCCCceeEeeeeccc
Q 007635 94 RNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNRKVIPIPFDQPEGDIIFLIGDWYT 173 (595)
Q Consensus 94 ~~~~~DGv~~tq~~I~PG~~~tY~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~ 173 (595)
+++||||+++|||||+||++|+|+|++++|+||||||||.+.|+.+||+|+|||++++..+.|+..+|+|++++|+||++
T Consensus 92 ~~~~~DGv~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~ 171 (543)
T PLN02991 92 RNSYQDGVYGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYK 171 (543)
T ss_pred CCccccCCCCCCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEecceec
Confidence 99999999999999999999999999977899999999999999999999999999876666776778999999999999
Q ss_pred ccHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCccCCCCCcceEEEecCCCEEEEEEEEcCCCceEEEEEeCccceeee
Q 007635 174 RNHTALRTALDSGKDLDMPDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVE 253 (595)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi~ 253 (595)
+....+...+..+...+++|.+||||++. .+.++|++||+|||||||+|....+.|+|+||+|+|||
T Consensus 172 ~~~~~~~~~~~~~~~~~~~d~~liNG~~~-------------~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa 238 (543)
T PLN02991 172 TNHKDLRAQLDNGGKLPLPDGILINGRGS-------------GATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVE 238 (543)
T ss_pred CCHHHHHHHhhcCCCCCCCCEEEEccCCC-------------CceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEE
Confidence 97766655555555667899999999985 36799999999999999999999999999999999999
Q ss_pred ccCccccceeecEEEEcCCcEEEEEEEcCCCCCcceEEEEeeecccccccccceeEEEEEecCCCCCCCCCCCCCCCCCC
Q 007635 254 TEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGAASGPLPEAPSDIY 333 (595)
Q Consensus 254 ~DG~~~~p~~~~~l~i~pG~R~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~~p~~~ 333 (595)
+||.+++|..+++|.|++||||||+|+++++++ +|||++...+... .....|||+|+++..+.+.+.|. .|.
T Consensus 239 ~DG~~~~p~~~~~l~i~~GQRydvlv~a~~~~~-~y~i~~~~~~~~~----~~~~~AIl~Y~g~~~~~~~~~p~-~p~-- 310 (543)
T PLN02991 239 VEGTHTIQTPFSSLDVHVGQSYSVLITADQPAK-DYYIVVSSRFTSK----ILITTGVLHYSNSAGPVSGPIPD-GPI-- 310 (543)
T ss_pred eCCccccceeeeEEEEcCCcEEEEEEECCCCCC-cEEEEEeeccCCC----CcceEEEEEeCCCCCCCCCCCCC-CCc--
Confidence 999999999999999999999999999999888 9999998654322 25678999999865322223343 332
Q ss_pred ccccccCccccccccCCCCCCCCCCCCCCCcCccceeeEEEEecCCCcccCCeEEEEecCeeccCCCChhhhhhcccCCC
Q 007635 334 NQWAAMTQPRSIRQNTSASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPETPIRLADKYNVKG 413 (595)
Q Consensus 334 ~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g 413 (595)
+..++.++....+.++.+....+.|..++.+...++++.+.+..... ..+|..+|+|||++|..|++|+|.+.+++++|
T Consensus 311 ~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g 389 (543)
T PLN02991 311 QLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINITRTIRLANSAG-NIEGKQRYAVNSASFYPADTPLKLADYFKIAG 389 (543)
T ss_pred cccccccchhhhhhcccCCCCCCCCCccccccccccceeEEEeeccc-ccCceEEEEECCCccCCCCCChhhhhhhcccC
Confidence 22333333333344555444445555544433445566655543221 23467799999999999999999888877788
Q ss_pred cccCC-CCCCCCCCCCCCceeeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccE
Q 007635 414 AYKLD-FPNKPLTRPPRTDRSLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCT 492 (595)
Q Consensus 414 ~~~~~-~~~~p~~~~~~~~~~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDT 492 (595)
.|..+ +++.|.+......++++.++.|++|||+|+|.+...||||||||+||||++|.|.|++.++..||+.||++|||
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDT 469 (543)
T PLN02991 390 VYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENWEDIVQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCT 469 (543)
T ss_pred ccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCCCCCCCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccE
Confidence 88765 45555444444567888999999999999999888999999999999999999999987677899999999999
Q ss_pred EEECCCcEEEEEEEeCCceeeeeeeccccceeccceeEEEEeCCCCCCCCCCCCCCCccccccccc
Q 007635 493 TEVYPGAWTAILVSLDNVGVWNLRVENLDRWYLGQETYMKIVNPEENGDTEMGPPDNVLYCGALQS 558 (595)
Q Consensus 493 v~v~p~g~~~Irf~adNpG~W~~HCHil~h~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~cg~~~~ 558 (595)
+.|+++||++|||++||||+|+|||||..|+.+||++++.|.++.+..+++.++|++.+.||..++
T Consensus 470 v~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~Cg~~~~ 535 (543)
T PLN02991 470 VQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPKNALLCGRATG 535 (543)
T ss_pred EEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCcccCccccCCC
Confidence 999999999999999999999999999999999999999999877776667889999999986665
No 3
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=5.3e-115 Score=949.38 Aligned_cols=545 Identities=50% Similarity=0.878 Sum_probs=437.4
Q ss_pred CcchhhhHHHHHHHHHHHHHhhcccccCceEEEEEEEEEEEeCCCCeeEEEEEECCCCCCceEEecCCCEEEEEEEeCCC
Q 007635 1 MASLRFLSLFLVLPIHIALFSSLCFAEDDTIFYDFKVSYITASPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLD 80 (595)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~dG~~~~~~~~Ng~~PGP~i~v~~Gd~v~v~v~N~l~ 80 (595)
|-..|-+..+|.++-+++++ ..+++++++|+|+|++.+.++||++|++++||||+|||+|++++||+|+|+|+|+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~ 77 (552)
T PLN02354 1 MMGGRLLAVLLCLAAAVALV---VRAEDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLD 77 (552)
T ss_pred CchHHHHHHHHHHHHHHHHh---hhccccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCC
Confidence 34445444443333333333 233457899999999999999999999999999999999999999999999999999
Q ss_pred CCceeecCCCccCCCCCCCCCCCCCCccCCCCeEEEEEEecCceeeeEEeccchhhhccCccccEEEccCCCCCCCCCCC
Q 007635 81 ESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNRKVIPIPFDQP 160 (595)
Q Consensus 81 ~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~tY~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~ 160 (595)
++++|||||++|++++||||+++|||||+||++|+|+|++.+|+||||||||.+.|+++||+|+|||+++...+.+|+.+
T Consensus 78 ~~ttiHWHGi~q~~~~~~DGv~~TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~ 157 (552)
T PLN02354 78 EPFLLTWSGIQQRKNSWQDGVPGTNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADP 157 (552)
T ss_pred CCcccccccccCCCCcccCCCcCCcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCc
Confidence 99999999999999999999999999999999999999987789999999999999999999999999987666777777
Q ss_pred CCceeEeeeecccccHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCccCCCCCcceEEEecCCCEEEEEEEEcCCCceE
Q 007635 161 EGDIIFLIGDWYTRNHTALRTALDSGKDLDMPDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSL 240 (595)
Q Consensus 161 d~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~ 240 (595)
|+|++++|+|||++....+...+..+...+.+|++||||++.+.+. .+.+.++|++||+|||||||+|....+
T Consensus 158 d~e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~~~~~-------~~~~~~~v~~Gk~yRlRiINa~~~~~~ 230 (552)
T PLN02354 158 EDDYTVLIGDWYTKSHTALKKFLDSGRTLGRPDGVLINGKSGKGDG-------KDEPLFTMKPGKTYRYRICNVGLKSSL 230 (552)
T ss_pred CceEEEEeeeeccCCHHHHHHHHhcCCCCCCCCeEEEeCCcCCCCC-------CCceEEEECCCCEEEEEEEecCCCceE
Confidence 8999999999999987777666666655567899999999753321 235789999999999999999999999
Q ss_pred EEEEeCccceeeeccCccccceeecEEEEcCCcEEEEEEEcCCCCCcceEEEEeeecccccccccceeEEEEEecCCCCC
Q 007635 241 NFRIQNHNLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGA 320 (595)
Q Consensus 241 ~~~i~gh~~~vi~~DG~~~~p~~~~~l~i~pG~R~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~ 320 (595)
.|+|+||+|+|||+||.+++|..+++|.|++||||||+|++++.+| +|||++...+.. ......|||+|+++..+
T Consensus 231 ~f~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydVlv~a~~~~g-~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~~ 305 (552)
T PLN02354 231 NFRIQGHKMKLVEMEGSHVLQNDYDSLDVHVGQCFSVLVTANQAPK-DYYMVASTRFLK----KVLTTTGIIRYEGGKGP 305 (552)
T ss_pred EEEECCceEEEEEeCCcccCCcceeEEEEccCceEEEEEECCCCCC-cEEEEEeccccC----CCccEEEEEEECCCCCC
Confidence 9999999999999999999999999999999999999999998888 999999754332 23567899999886543
Q ss_pred CCCCCCCCCCCCCccccccCccccccccCCCCCCCCCCCCCCCcCccceeeEEEEecCCCcccCCeEEEEecCeeccCCC
Q 007635 321 ASGPLPEAPSDIYNQWAAMTQPRSIRQNTSASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPE 400 (595)
Q Consensus 321 ~~~~~p~~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~ 400 (595)
++...|. .|. +..+...++.+++.++.+....+.|.........++++++.+..... ..+|..+|+|||++|..|+
T Consensus 306 ~~~~~p~-~~~--~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~iNn~s~~~p~ 381 (552)
T PLN02354 306 ASPELPE-APV--GWAWSLNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSAS-KVDGKLRYALNGVSHVDPE 381 (552)
T ss_pred CCCCCCC-CCc--ccccchhhhhhhhhcccccccCCCCCCccccccccccceEEEecccc-cCCceEEEEECCccCCCCC
Confidence 2222332 121 11122223333334444433334443333323345566666654322 2356788999999999999
Q ss_pred ChhhhhhcccC-CCcccCC-CCCCCC--CCCCCCceeeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCC
Q 007635 401 TPIRLADKYNV-KGAYKLD-FPNKPL--TRPPRTDRSLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTE 476 (595)
Q Consensus 401 ~P~l~~~~~~~-~g~~~~~-~~~~p~--~~~~~~~~~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~ 476 (595)
+|+|.+.++++ .|.++.+ ++..|. ......+++++.++.|++|||+|+|.+...||||||||+||||++|.|.|++
T Consensus 382 ~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~VeiVi~n~~~~~HP~HLHGh~F~Vlg~G~G~~~~ 461 (552)
T PLN02354 382 TPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTFVEIIFENHEKSMQSWHLDGYSFFAVAVEPGTWTP 461 (552)
T ss_pred CChHHhhhhcccCCccccCccccCCccccCccccCCeeEEcCCCCEEEEEEeCCCCCCCCCcCCCccEEEEeecCCCCCc
Confidence 99998776544 3555533 222221 1223446788899999999999999988899999999999999999999988
Q ss_pred CCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCceeeeeeeccccceeccceeEEEEeCCCCCCCCCCCCCCCccccccc
Q 007635 477 SNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGVWNLRVENLDRWYLGQETYMKIVNPEENGDTEMGPPDNVLYCGAL 556 (595)
Q Consensus 477 ~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~W~~HCHil~h~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~cg~~ 556 (595)
+....||+.||++|||+.|+++||++|||++||||+|+|||||+.|+++||++++.|.++....++..++|++.+.|++.
T Consensus 462 ~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~~C~~~ 541 (552)
T PLN02354 462 EKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLRDEYNMPENALLCGKV 541 (552)
T ss_pred cccccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCCccccCcCCCCCccccccccc
Confidence 76778999999999999999999999999999999999999999999999999999987665555556789999999999
Q ss_pred ccCccccc
Q 007635 557 QSKQKAQK 564 (595)
Q Consensus 557 ~~~~~~~~ 564 (595)
+++.++++
T Consensus 542 ~~~~~~~~ 549 (552)
T PLN02354 542 KGLPKPPP 549 (552)
T ss_pred cCCCCCCC
Confidence 88776654
No 4
>PLN02792 oxidoreductase
Probab=100.00 E-value=6.5e-114 Score=936.44 Aligned_cols=515 Identities=50% Similarity=0.887 Sum_probs=434.4
Q ss_pred cccCceEEEEEEEEEEEeCCCCeeEEEEEECCCCCCceEEecCCCEEEEEEEeCCCCCceeecCCCccCCCCCCCCCCCC
Q 007635 25 FAEDDTIFYDFKVSYITASPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGT 104 (595)
Q Consensus 25 ~~~~~~~~~~~~v~~~~~~~dG~~~~~~~~Ng~~PGP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~t 104 (595)
...+++++|+|+|++...++||+.|++++||||+|||+|++++||+|+|+|+|+|+++++|||||++|++++|+||+++|
T Consensus 11 ~~~~~~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~t 90 (536)
T PLN02792 11 VKADDTLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGT 90 (536)
T ss_pred hhcCCeEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCC
Confidence 44556789999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCccCCCCeEEEEEEecCceeeeEEeccchhhhccCccccEEEccCCCCCCCCCCCCCceeEeeeecccccHHHHHHHHh
Q 007635 105 NCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNRKVIPIPFDQPEGDIIFLIGDWYTRNHTALRTALD 184 (595)
Q Consensus 105 q~~I~PG~~~tY~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~ 184 (595)
||||+||++|+|+|++++|+||||||||.+.|+++||+|+|||++++..+.++..+|+|++++|+||++++...+...+.
T Consensus 91 qcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~~~~~ 170 (536)
T PLN02792 91 TCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLKKILD 170 (536)
T ss_pred cCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHHHHhh
Confidence 99999999999999998799999999999999999999999999866556677677899999999999998766665565
Q ss_pred cCCCCC-CCceEEEccCCCCCCCCccCCCCCcceEEEecCCCEEEEEEEEcCCCceEEEEEeCccceeeeccCcccccee
Q 007635 185 SGKDLD-MPDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQN 263 (595)
Q Consensus 185 ~~~~~~-~~d~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi~~DG~~~~p~~ 263 (595)
.+...+ ++|.+||||++..+ .+.++|++||+|||||||+|..+.+.|+|+||+|+|||+||.+++|..
T Consensus 171 ~g~~~~~~~d~~liNG~~~~~-----------~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~ 239 (536)
T PLN02792 171 GGRKLPLMPDGVMINGQGVSY-----------VYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSM 239 (536)
T ss_pred ccCcCCCCCCEEEEeccCCCC-----------cceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcc
Confidence 554434 78999999998643 278999999999999999999999999999999999999999999999
Q ss_pred ecEEEEcCCcEEEEEEEcCCCCCcceEEEEeeecccccccccceeEEEEEecCCCCCCCCCCCCCCCCCCccccccCccc
Q 007635 264 YTSFEIHVGQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGAASGPLPEAPSDIYNQWAAMTQPR 343 (595)
Q Consensus 264 ~~~l~i~pG~R~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~~p~~~~~~~~~~~~~ 343 (595)
+++|.|++||||||+|++++.++ +|||++...+... +..+.|||+|+++....+ ..|. .|..++..++.....
T Consensus 240 ~~~l~i~~GqRydVlV~a~~~~g-~Y~i~a~~~~~~~----~~~~~ail~Y~g~~~~~~-~~p~-~p~~~~~~~~~~~~~ 312 (536)
T PLN02792 240 YTSLDIHVGQTYSVLVTMDQPPQ-NYSIVVSTRFIAA----KVLVSSTLHYSNSKGHKI-IHAR-QPDPDDLEWSIKQAQ 312 (536)
T ss_pred eeEEEEccCceEEEEEEcCCCCc-eEEEEEEeccCCC----CCceEEEEEECCCCCCCC-CCCC-CCCcCCccccccchh
Confidence 99999999999999999998878 9999998764322 257789999988643211 1222 232234444443334
Q ss_pred cccccCCCCCCCCCCCCCCCcCccceeeEEEEecCCCcccCCeEEEEecCeeccCCCChhhhhhcccCCCcccCC-CCCC
Q 007635 344 SIRQNTSASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPETPIRLADKYNVKGAYKLD-FPNK 422 (595)
Q Consensus 344 ~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~-~~~~ 422 (595)
.++.++.+..+.++|++++.+....+++++.+..... ..++..+|+|||++|..|++|+|++.++++.|.++.+ +++.
T Consensus 313 ~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~ 391 (536)
T PLN02792 313 SIRTNLTASGPRTNPQGSYHYGKMKISRTLILESSAA-LVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDK 391 (536)
T ss_pred hhhhccCCCCCCCCCCcccccceeccceeEEeccccc-ccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccC
Confidence 4455555444556676665554555666665554222 2345678999999999999999998877777877654 5555
Q ss_pred CCCC-CCCCceeeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEE
Q 007635 423 PLTR-PPRTDRSLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWT 501 (595)
Q Consensus 423 p~~~-~~~~~~~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~ 501 (595)
|..+ ....++.++.+++|++|||+|+|.+...||||||||+||||++|.|.|+++.+..||+.||++||||.|+++||+
T Consensus 392 p~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~ 471 (536)
T PLN02792 392 PRRGGGMRLDTSVMGAHHNAFLEIIFQNREKIVQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWT 471 (536)
T ss_pred CcccCCCccCceEEEcCCCCEEEEEEECCCCCCCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEE
Confidence 5432 233467889999999999999998888999999999999999999999987778899999999999999999999
Q ss_pred EEEEEeCCceeeeeeeccccceeccceeEEEEeCCCCCCCCCCCCCCCccccccccc
Q 007635 502 AILVSLDNVGVWNLRVENLDRWYLGQETYMKIVNPEENGDTEMGPPDNVLYCGALQS 558 (595)
Q Consensus 502 ~Irf~adNpG~W~~HCHil~h~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~cg~~~~ 558 (595)
+|||+|||||+|+||||++.|+.+||+++|.|.++.+..+++.++|++.+.||..++
T Consensus 472 aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~Cg~~~~ 528 (536)
T PLN02792 472 AVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLCGRASN 528 (536)
T ss_pred EEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccCccccccC
Confidence 999999999999999999999999999999999877766667889999999997766
No 5
>PLN02835 oxidoreductase
Probab=100.00 E-value=1.6e-113 Score=936.58 Aligned_cols=515 Identities=51% Similarity=0.883 Sum_probs=427.7
Q ss_pred hcccccCceEEEEEEEEEEEeCCCCeeEEEEEECCCCCCceEEecCCCEEEEEEEeCCCCCceeecCCCccCCCCCCCCC
Q 007635 22 SLCFAEDDTIFYDFKVSYITASPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGV 101 (595)
Q Consensus 22 ~~~~~~~~~~~~~~~v~~~~~~~dG~~~~~~~~Ng~~PGP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv 101 (595)
+...+.+++|+|+|+|++...++||+++++|+||||+|||+|++++||+|+|+|+|+|+++++|||||++|++++||||+
T Consensus 21 ~~~~~~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv 100 (539)
T PLN02835 21 SLVNGEDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGV 100 (539)
T ss_pred hhhhccCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCC
Confidence 34455668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCCeEEEEEEecCceeeeEEeccchhhhccCccccEEEccCCCCCCCCCCCCCceeEeeeecccccHHHHHH
Q 007635 102 QGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNRKVIPIPFDQPEGDIIFLIGDWYTRNHTALRT 181 (595)
Q Consensus 102 ~~tq~~I~PG~~~tY~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~ 181 (595)
++|||||+||++|+|+|++++|+||||||||++.|+++||+|+|||++++..+.++..+|+|++++++||+++....+..
T Consensus 101 ~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~ 180 (539)
T PLN02835 101 LGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGDFTLLVGDWYKTSHKTLQQ 180 (539)
T ss_pred ccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCceEEEEeeccccCCHHHHHH
Confidence 99999999999999999987789999999999999999999999998765555666678999999999999998766665
Q ss_pred HHhcCCCCCCCceEEEccCCCCCCCCccCCCCCcceEEEecCCCEEEEEEEEcCCCceEEEEEeCccceeeeccCccccc
Q 007635 182 ALDSGKDLDMPDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQ 261 (595)
Q Consensus 182 ~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi~~DG~~~~p 261 (595)
.+..+...+.+|.+||||+.. +.++|++||+|||||||+|..+.+.|+|+||+|+|||+||.+++|
T Consensus 181 ~~~~g~~~~~~d~~liNG~~~--------------~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v~p 246 (539)
T PLN02835 181 RLDSGKVLPFPDGVLINGQTQ--------------STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSHTIQ 246 (539)
T ss_pred HhhcCCCCCCCceEEEccccC--------------ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCccCCC
Confidence 666666677899999999986 789999999999999999999999999999999999999999999
Q ss_pred eeecEEEEcCCcEEEEEEEcCCCCCcceEEEEeeecccccccccceeEEEEEecCCCCCCCCCCCCCCCCCCccccccCc
Q 007635 262 QNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGAASGPLPEAPSDIYNQWAAMTQ 341 (595)
Q Consensus 262 ~~~~~l~i~pG~R~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~~p~~~~~~~~~~~ 341 (595)
..+++|.|++||||||+|++++.+| +|||++...+.. ......|||+|+++..+.+.++|. .|. .+..++...
T Consensus 247 ~~~~~l~i~~GqRydvlv~~~~~~g-~y~i~a~~~~~~----~~~~~~ail~Y~~~~~~~~~~~p~-~p~-~~~~~~~~~ 319 (539)
T PLN02835 247 NIYDSLDVHVGQSVAVLVTLNQSPK-DYYIVASTRFTR----QILTATAVLHYSNSRTPASGPLPA-LPS-GELHWSMRQ 319 (539)
T ss_pred ceeeEEEECcCceEEEEEEcCCCCC-cEEEEEEccccC----CCcceEEEEEECCCCCCCCCCCCC-CCc-cccccccch
Confidence 9999999999999999999998877 999998653322 125678999998865333333343 221 111112222
Q ss_pred cccccccCCCCCCCCCCCCCCCcCccceeeEEEEecCCCcccCCeEEEEecCeeccCCCChhhhhhcccCCCcccCC-CC
Q 007635 342 PRSIRQNTSASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPETPIRLADKYNVKGAYKLD-FP 420 (595)
Q Consensus 342 ~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~-~~ 420 (595)
+....+.+.+....+.+..++......+++++.+..... ..+|..+|++||++|..|++|+|++.+++.++.|+.+ +.
T Consensus 320 ~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~ 398 (539)
T PLN02835 320 ARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAP-LINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQ 398 (539)
T ss_pred hhccccccCccccCCCCCccccccccCCCceEEEecccc-ccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccc
Confidence 333334444444445544333333344566665543221 3456789999999999999999887777667777643 22
Q ss_pred CCCCCCCCCCceeeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcE
Q 007635 421 NKPLTRPPRTDRSLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAW 500 (595)
Q Consensus 421 ~~p~~~~~~~~~~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~ 500 (595)
..+.+...+.+++++.+++|++|||+|+|.+...||||||||+||||++|.|.|+++....+|+.||++|||+.|+++||
T Consensus 399 ~~~~~~~~~~~t~~~~~~~~~~Veivi~N~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw 478 (539)
T PLN02835 399 SLPSGGPAFVATSVMQTSLHDFLEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSW 478 (539)
T ss_pred cCCCCCccccCCeEEEcCCCCEEEEEEECCCCCCCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCE
Confidence 23333234557889999999999999999998999999999999999999999987666678999999999999999999
Q ss_pred EEEEEEeCCceeeeeeeccccceeccceeEEEEeCCCCCCCCCCCCCCCccccccccc
Q 007635 501 TAILVSLDNVGVWNLRVENLDRWYLGQETYMKIVNPEENGDTEMGPPDNVLYCGALQS 558 (595)
Q Consensus 501 ~~Irf~adNpG~W~~HCHil~h~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~cg~~~~ 558 (595)
++|||+|||||+|+|||||++|+..||++++.|.++.+...+..++|++++.||..++
T Consensus 479 ~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~Cg~~~~ 536 (539)
T PLN02835 479 TTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDNALLCGKAIG 536 (539)
T ss_pred EEEEEECcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCccccccccCcc
Confidence 9999999999999999999999999999999999876665666789999999987665
No 6
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=1.6e-113 Score=933.63 Aligned_cols=524 Identities=47% Similarity=0.875 Sum_probs=420.9
Q ss_pred HHHHHHhhcccccCceEEEEEEEEEEEeCCCCeeEEEEEECCCCCCceEEecCCCEEEEEEEeCCCCCceeecCCCccCC
Q 007635 15 IHIALFSSLCFAEDDTIFYDFKVSYITASPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRR 94 (595)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~dG~~~~~~~~Ng~~PGP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~ 94 (595)
|..++++-...|.+++|+|+|+|++.+.+|||+++++++|||++|||+|++++||+|+|+|+|+|+++|+|||||++|.+
T Consensus 11 ~~~~~~~~~~~~~a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~ 90 (545)
T PLN02168 11 LISLVILELSYAFAPIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRK 90 (545)
T ss_pred HHHHHHHHhhhccccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCC
Confidence 33333333333346899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccCCCCeEEEEEEecCceeeeEEeccchhhhccCccccEEEccCCCCCCCCCCCCCceeEeeeecccc
Q 007635 95 NSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNRKVIPIPFDQPEGDIIFLIGDWYTR 174 (595)
Q Consensus 95 ~~~~DGv~~tq~~I~PG~~~tY~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~ 174 (595)
++||||+++|||||+||++|+|+|++++|+||||||||.+.|+.+||+|+|||++++..+.|+..+++|++|+|+||+++
T Consensus 91 ~~~~DGv~gtQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~ 170 (545)
T PLN02168 91 NSWQDGVRGTNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYA 170 (545)
T ss_pred CCCcCCCCCCcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCC
Confidence 99999999999999999999999999778999999999999999999999999998766667767789999999999998
Q ss_pred cHHHHHHHHhcCCCCCCCceEEEccCCCCCCCCccCCCCCcceEEEecCCCEEEEEEEEcCCCceEEEEEeCccceeeec
Q 007635 175 NHTALRTALDSGKDLDMPDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVET 254 (595)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi~~ 254 (595)
+...+...+..+...+.+|.+||||++.. .+.++|++||+|||||||++..+.+.|+|+||+|+||++
T Consensus 171 ~~~~~~~~~~~g~~~~~~d~~liNG~~~~------------~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~ 238 (545)
T PLN02168 171 DHTVMRASLDNGHSLPNPDGILFNGRGPE------------ETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVET 238 (545)
T ss_pred CHHHHHhhhhcCCCCCCCCEEEEeccCCC------------cceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEE
Confidence 76555444444444567899999999842 378999999999999999999999999999999999999
Q ss_pred cCccccceeecEEEEcCCcEEEEEEEcCCCC-C--cceEEEEeeecccccccccceeEEEEEecCCCCCCCCCCCCCCCC
Q 007635 255 EGHYTSQQNYTSFEIHVGQSYSFLVTMDQNA-S--SDYYIVASARFVNESFWQRVTGVAILHYSNSKGAASGPLPEAPSD 331 (595)
Q Consensus 255 DG~~~~p~~~~~l~i~pG~R~dvlv~~~~~~-g--~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~~p~ 331 (595)
||.+++|..+++|.|++||||||+|++++.+ | ++|||++....... ...+.|||+|+++....+.++|. .|.
T Consensus 239 DG~~v~p~~~~~l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~~----~~~~~ail~Y~~~~~~~~~p~p~-~p~ 313 (545)
T PLN02168 239 EGTYVQKRVYSSLDIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTDA----YLGGVALIRYPNSPLDPVGPLPL-APA 313 (545)
T ss_pred CCeECCCceeeEEEEcCCceEEEEEEcCCCCCCCcceEEEEEEecccCC----CcceEEEEEECCCCCCCCCCCCC-CCc
Confidence 9999999999999999999999999998654 3 38999998754332 25678999998764322223333 232
Q ss_pred CCccccccCccccccccCCCCCCCCCCCCCCCcCccceeeEEEEecCCCcccCCeEEEEecCeeccCCCChhhhhhcccC
Q 007635 332 IYNQWAAMTQPRSIRQNTSASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPETPIRLADKYNV 411 (595)
Q Consensus 332 ~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~ 411 (595)
..+...+.+....++.++.+..+.+.|..++.+...++++++.+.... ...+|..+|+|||++|..|++|++++.++++
T Consensus 314 ~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~ 392 (545)
T PLN02168 314 LHDYFSSVEQALSIRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDV-MLSSGKLRYTINGVSFVYPGTPLKLVDHFQL 392 (545)
T ss_pred ccccccccchhhhhhhcCCCCCCCCCCcccccccccccceeEEecccc-cccCceEEEEECCCccCCCCCchhhhhhccc
Confidence 222222222222223344443444555544444344556666554321 1235678999999999999999987776654
Q ss_pred CCcccCC-CCCCCCCCCCCCceeeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcc
Q 007635 412 KGAYKLD-FPNKPLTRPPRTDRSLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISK 490 (595)
Q Consensus 412 ~g~~~~~-~~~~p~~~~~~~~~~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~R 490 (595)
++.+..+ ++..|.+.....+++++.++.|++|||+|+|.+...||||||||+||||++|.|.|+++.+..||+.||++|
T Consensus 393 ~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rR 472 (545)
T PLN02168 393 NDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFYHIVFQNPLFSLESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSR 472 (545)
T ss_pred ccccccCCCccCCCcCccccCceEEEecCCCEEEEEEeCCCCCCCCeeeCCCceEEEECCCCCCCccccccCCCCCCCcc
Confidence 4443322 333333222223578889999999999999998889999999999999999999999877778999999999
Q ss_pred cEEEECCCcEEEEEEEeCCceeeeeeeccccceeccceeEEEEe-----CCCCC-CCCCCCCCCCccccccc
Q 007635 491 CTTEVYPGAWTAILVSLDNVGVWNLRVENLDRWYLGQETYMKIV-----NPEEN-GDTEMGPPDNVLYCGAL 556 (595)
Q Consensus 491 DTv~v~p~g~~~Irf~adNpG~W~~HCHil~h~~~Gm~~~~~V~-----~~~~~-~~~~~~~P~~~~~cg~~ 556 (595)
||+.|+++||++|||+|||||+|+|||||..|||+||+++++|. +|++. .+++.++|++.+.||..
T Consensus 473 DTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~~~~~P~~~~~cg~~ 544 (545)
T PLN02168 473 STVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRDENPIPGNVIRCGKV 544 (545)
T ss_pred ceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEcccccCccccccccccCCChhhcccccC
Confidence 99999999999999999999999999999999999999999985 34443 23446789999999843
No 7
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3e-111 Score=908.36 Aligned_cols=536 Identities=44% Similarity=0.710 Sum_probs=474.1
Q ss_pred HHHHHHHhhcccccCceEEEEEEEEEEEeCCCCeeEEEEEECCCCCCceEEecCCCEEEEEEEeCCCCCceeecCCCccC
Q 007635 14 PIHIALFSSLCFAEDDTIFYDFKVSYITASPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMR 93 (595)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~dG~~~~~~~~Ng~~PGP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~ 93 (595)
.+++++++....|+++.+.|+|++++..++++|.++++++|||+||||+|+|++||+|+|+|.|+++++++|||||++|+
T Consensus 12 ~~~~~~~~~~~~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~ 91 (563)
T KOG1263|consen 12 LCGSLLLVFFSQAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQR 91 (563)
T ss_pred HHHHHHHHHHhhhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEecccccc
Confidence 34444445667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccCCCCeEEEEEEecCceeeeEEeccchhhhccCccccEEEccCCCCCCCCCCCCCceeEeeeeccc
Q 007635 94 RNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNRKVIPIPFDQPEGDIIFLIGDWYT 173 (595)
Q Consensus 94 ~~~~~DGv~~tq~~I~PG~~~tY~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~ 173 (595)
.++|+||+.+|||||+||++|||+|++++|.||||||+|++.|+++|++|+|||+++...+.||+.+|+|++|+++|||+
T Consensus 92 kn~w~DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~ 171 (563)
T KOG1263|consen 92 KNPWQDGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYK 171 (563)
T ss_pred CCccccCCccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeecc
Confidence 99999994459999999999999999998999999999999999999999999999988888898899999999999999
Q ss_pred c-cHHHHHHHHhcCCCCCC-CceEEEccCCCCCCCCccCCCCCcceEEEecCCCEEEEEEEEcCCCceEEEEEeCcccee
Q 007635 174 R-NHTALRTALDSGKDLDM-PDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLL 251 (595)
Q Consensus 174 ~-~~~~~~~~~~~~~~~~~-~d~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~v 251 (595)
+ +...+...++.+...+. +|.++|||+..+..+| .++++|++||+|||||+|+|....+.|+|+||+|+|
T Consensus 172 ~~~~~~l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~--------~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltv 243 (563)
T KOG1263|consen 172 NLNHKNLKNFLDRTGALPNPSDGVLINGRSGFLYNC--------TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTV 243 (563)
T ss_pred ccCHHHHHHhhccCCCCCCCCCceEECCCCCcccCc--------eeEEEEcCCCEEEEEEEccccccceEEEECCeEEEE
Confidence 6 88888888777666555 8999999999766555 389999999999999999999999999999999999
Q ss_pred eeccCccccceeecEEEEcCCcEEEEEEEcCCCCCcceEEEEeeecccccccccceeEEEEEecCCCCCCCCCCC---CC
Q 007635 252 VETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGAASGPLP---EA 328 (595)
Q Consensus 252 i~~DG~~~~p~~~~~l~i~pG~R~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p---~~ 328 (595)
||+||.+++|..+++|.|+|||||||+|+++|.++ +|+|++..++.....+-+....++++|.++..+.+.+.| .
T Consensus 244 Ve~Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq~~~-~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~~~~~~- 321 (563)
T KOG1263|consen 244 VEVDGAYTKPFTTDSLDIHPGQTYSVLLTADQSPG-DYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKLPIYPF- 321 (563)
T ss_pred EEecceEEeeeeeceEEEcCCcEEEEEEeCCCCCC-cEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccCccccc-
Confidence 99999999999999999999999999999999999 999999987764322225788999999985544444322 1
Q ss_pred CCCCCccccccCccccccccCCCCCCCCCCCCCCCcCccceeeEEEEecCCCcccCCeEEEEecCeeccCCCChhhhhhc
Q 007635 329 PSDIYNQWAAMTQPRSIRQNTSASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPETPIRLADK 408 (595)
Q Consensus 329 ~p~~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~ 408 (595)
.|..++..++.++.+.++.+++...+.++|+++++++...+.+.+.+..... ..+++.+++||+++|+.|++|.+++.+
T Consensus 322 ~~~~~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~siN~isf~~P~tp~~l~~~ 400 (563)
T KOG1263|consen 322 LPPGNDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDN-KNNGKLRASINNISFVTPKTPSLLAAY 400 (563)
T ss_pred CCcccCchhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCC-CCCcEEEEEEcceEEECCCCchhhhhh
Confidence 2222466777888889999888889999999999998888888888887643 567899999999999999999999988
Q ss_pred ccC-CCcccCCCCCCCCC---CC-CCCceeeeeecCCcEEEEEEecCCC---CceeeeecCceEEEEeecccccCC--CC
Q 007635 409 YNV-KGAYKLDFPNKPLT---RP-PRTDRSLINATYKGFIEIILQNNDT---KMQSFHMDGYSFFVVGMDFGIWTE--SN 478 (595)
Q Consensus 409 ~~~-~g~~~~~~~~~p~~---~~-~~~~~~v~~~~~g~~ve~vl~N~~~---~~HP~HlHG~~F~Vv~~~~G~~~~--~~ 478 (595)
+.. ++.+..++++.|.. +. .+.+++++.++++++||+||+|.+. ..||||||||+||||++|.|+|++ +.
T Consensus 401 ~~~~~~~~~~d~p~~P~~~~~~~~~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~ 480 (563)
T KOG1263|consen 401 FKNIPGYFTNDFPDKPPIKFDYTGPTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDP 480 (563)
T ss_pred hccCCccccCccCCCCccccCCccccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcCh
Confidence 754 45555557777722 12 3789999999999999999999874 458889999999999999999999 55
Q ss_pred CCCCCcCCCCcccEEEECCCcEEEEEEEeCCceeeeeeeccccceeccceeEEEEeCCCCCCCCCCCCCCCccccccccc
Q 007635 479 RNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGVWNLRVENLDRWYLGQETYMKIVNPEENGDTEMGPPDNVLYCGALQS 558 (595)
Q Consensus 479 ~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~W~~HCHil~h~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~cg~~~~ 558 (595)
+..||++||+.||||.||||||++|||.|||||+|+||||+++|++.||+++|.|.++++..+++.++|.+.+.||..++
T Consensus 481 ~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P~~~~~cg~~~~ 560 (563)
T KOG1263|consen 481 RKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPPKNLPKCGRASG 560 (563)
T ss_pred hhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCCCCcccccccCC
Confidence 67899999999999999999999999999999999999999999999999999999988887788899999999999877
Q ss_pred Cc
Q 007635 559 KQ 560 (595)
Q Consensus 559 ~~ 560 (595)
+.
T Consensus 561 ~~ 562 (563)
T KOG1263|consen 561 IP 562 (563)
T ss_pred cC
Confidence 54
No 8
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=1.8e-102 Score=857.16 Aligned_cols=510 Identities=26% Similarity=0.495 Sum_probs=391.0
Q ss_pred ceEEEEEEEEEEEeCCCCeeEEEEEECCCCCCceEEecCCCEEEEEEEeCCCCCceeecCCCccCCCCCCCCCCC-CCCc
Q 007635 29 DTIFYDFKVSYITASPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQG-TNCP 107 (595)
Q Consensus 29 ~~~~~~~~v~~~~~~~dG~~~~~~~~Ng~~PGP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~-tq~~ 107 (595)
++|+|+|+|++..+++||++|++|+|||++|||+|++++||+|+|+|+|+|+++++|||||++|.+++|+||+++ ||||
T Consensus 2 ~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~p 81 (539)
T TIGR03389 2 EVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCP 81 (539)
T ss_pred ceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCC
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred cCCCCeEEEEEEecCceeeeEEeccchhhhccCccccEEEccCCCCCCCCCCCCCceeEeeeecccccHHHHH-HHHhcC
Q 007635 108 IPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNRKVIPIPFDQPEGDIIFLIGDWYTRNHTALR-TALDSG 186 (595)
Q Consensus 108 I~PG~~~tY~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~-~~~~~~ 186 (595)
|+||++|+|+|++++|+||||||||...|+ +||+|+|||+++...+.++..+|+|++|+|+||++++...+. .....+
T Consensus 82 I~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~-~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 160 (539)
T TIGR03389 82 IQPGQSYVYNFTITGQRGTLWWHAHISWLR-ATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTG 160 (539)
T ss_pred cCCCCeEEEEEEecCCCeeEEEecCchhhh-ccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcC
Confidence 999999999999976899999999998776 599999999998765666667799999999999998765543 333444
Q ss_pred CCCCCCceEEEccCCCCCCCCccCCCCCcceEEEecCCCEEEEEEEEcCCCceEEEEEeCccceeeeccCccccceeecE
Q 007635 187 KDLDMPDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQNYTS 266 (595)
Q Consensus 187 ~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi~~DG~~~~p~~~~~ 266 (595)
....++|+++|||+.....+|.. ...+.++|++||+|||||||+|....+.|+|+||+|+|||+||.+++|+.+++
T Consensus 161 ~~~~~~d~~liNG~~~~~~~~~~----~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~ 236 (539)
T TIGR03389 161 GAPNVSDAYTINGHPGPLYNCSS----KDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKT 236 (539)
T ss_pred CCCCccceEEECCCcCCCCCCCC----CCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCe
Confidence 44557899999999754333321 23578999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCcEEEEEEEcCCCCCcceEEEEeeecccccccccceeEEEEEecCCCCCCCCCCCCCCCCCCccccccCcccccc
Q 007635 267 FEIHVGQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGAASGPLPEAPSDIYNQWAAMTQPRSIR 346 (595)
Q Consensus 267 l~i~pG~R~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~ 346 (595)
+.|++||||||+|++++.+| +||||+................|||+|+++........+. .|..++...+......+.
T Consensus 237 l~i~~GqRydVlv~a~~~~g-~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~l~ 314 (539)
T TIGR03389 237 IVIGPGQTTNVLLTADQSPG-RYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPT-LPAYNDTAAATNFSNKLR 314 (539)
T ss_pred EEecCCCEEEEEEECCCCCc-eEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCC-CCCCCchhhhhHHHhhcc
Confidence 99999999999999998888 9999997643221111235688999998754311111111 111111110000000010
Q ss_pred ccCCCCCCCCCCCCCCCcCccceeeEEEEecCCC---------ccc-CCeEEEEecCeeccCCCChhhhhhcccCCCccc
Q 007635 347 QNTSASGARPNPQGSFHYGSINITDTYVLRSLPP---------VTI-DGKVRSTLNGISFVKPETPIRLADKYNVKGAYK 416 (595)
Q Consensus 347 ~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~---------~~~-~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~ 416 (595)
....+..+...| ..+++++.+..... ... ....+|+|||++|..|++|++.+.+.++++.+.
T Consensus 315 ~~~~~~~~~~~p--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~ 386 (539)
T TIGR03389 315 SLNSAQYPANVP--------VTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFT 386 (539)
T ss_pred cccccCCCCCCC--------CCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccc
Confidence 000010011111 12233332222110 011 224689999999999999988766555445443
Q ss_pred CCCCCCCC------------CCCCCCceeeeeecCCcEEEEEEecCC---CCceeeeecCceEEEEeecccccCCCC-CC
Q 007635 417 LDFPNKPL------------TRPPRTDRSLINATYKGFIEIILQNND---TKMQSFHMDGYSFFVVGMDFGIWTESN-RN 480 (595)
Q Consensus 417 ~~~~~~p~------------~~~~~~~~~v~~~~~g~~ve~vl~N~~---~~~HP~HlHG~~F~Vv~~~~G~~~~~~-~~ 480 (595)
.++++.+. +...+.+++++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|+... ..
T Consensus 387 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~ 466 (539)
T TIGR03389 387 TDFPANPPTKFNYTGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPA 466 (539)
T ss_pred cCCccCCCccccCCCCCcccccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCcc
Confidence 32222111 001223668899999999999999985 448999999999999999999987543 34
Q ss_pred CCCcCCCCcccEEEECCCcEEEEEEEeCCceeeeeeeccccceeccceeEEEEeCCCCCCCCCCCCCCCcccc
Q 007635 481 SYNKWDAISKCTTEVYPGAWTAILVSLDNVGVWNLRVENLDRWYLGQETYMKIVNPEENGDTEMGPPDNVLYC 553 (595)
Q Consensus 481 ~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~W~~HCHil~h~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~c 553 (595)
.+|+.||++|||+.|+++||++|||++||||+|+|||||..|...||+++|.+...+....+..++|++++.|
T Consensus 467 ~~nl~nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 467 KFNLVDPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred ccccCCCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 6899999999999999999999999999999999999999999999999998875444334467899999998
No 9
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=6.7e-102 Score=852.24 Aligned_cols=510 Identities=27% Similarity=0.487 Sum_probs=389.3
Q ss_pred CceEEEEEEEEEEEeCCCCeeEEEEEECCCCCCceEEecCCCEEEEEEEeCCC-CCceeecCCCccCCCCCCCCCCC-CC
Q 007635 28 DDTIFYDFKVSYITASPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLD-ESLLMTWPGIQMRRNSWQDGVQG-TN 105 (595)
Q Consensus 28 ~~~~~~~~~v~~~~~~~dG~~~~~~~~Ng~~PGP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-tq 105 (595)
+++|+|+|++++..++|||++|++++|||++|||+||+++||+|+|+|+|+|+ ++++|||||++|++++|+||+++ ||
T Consensus 21 ~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq 100 (574)
T PLN02191 21 AAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQ 100 (574)
T ss_pred cceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCcccc
Confidence 57899999999999999999999999999999999999999999999999998 78999999999999999999999 99
Q ss_pred CccCCCCeEEEEEEecCceeeeEEeccchhhhccCccccEEEccCCCCCCCCCCCCCceeEeeeecccccHHHHHHHHhc
Q 007635 106 CPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNRKVIPIPFDQPEGDIIFLIGDWYTRNHTALRTALDS 185 (595)
Q Consensus 106 ~~I~PG~~~tY~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~~ 185 (595)
|||+||++|+|+|++ +|+||||||||.+.|+.+||+|+|||+++.....++ .+|+|++|+|+||+|+........+..
T Consensus 101 ~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~ 178 (574)
T PLN02191 101 CAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERL-RYDGEFNLLLSDWWHESIPSQELGLSS 178 (574)
T ss_pred CCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCC-CCCeeEEEeeeccccCChHHHHHhhcc
Confidence 999999999999999 589999999999999999999999999755433333 469999999999999864432222211
Q ss_pred --CCCCCCCceEEEccCCCCCCCCccC--------------CCCCcceEEEecCCCEEEEEEEEcCCCceEEEEEeCccc
Q 007635 186 --GKDLDMPDGVLINGKGPYRYNTTLV--------------PDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNL 249 (595)
Q Consensus 186 --~~~~~~~d~~liNG~~~~~~~~~~~--------------~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~ 249 (595)
.....+++++||||++++.|..+.. ...+....++|++||+|||||||+|+.+.+.|+|+||+|
T Consensus 179 ~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~ 258 (574)
T PLN02191 179 KPMRWIGEAQSILINGRGQFNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKL 258 (574)
T ss_pred CCCCcCCCCCceEECCCCCCCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeE
Confidence 1123568999999999887742210 011334479999999999999999999999999999999
Q ss_pred eeeeccCccccceeecEEEEcCCcEEEEEEEcCCCCCcceEEEEeeecccccccccceeEEEEEecCCCCCC--CCCCCC
Q 007635 250 LLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGAA--SGPLPE 327 (595)
Q Consensus 250 ~vi~~DG~~~~p~~~~~l~i~pG~R~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~--~~~~p~ 327 (595)
+|||+||.+++|+.+++|.|++||||||+|++++.++++||||+....... ......|||+|.+..... +.+.|.
T Consensus 259 tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~---~~~~~~ail~Y~~~~~~~~p~~~~~~ 335 (574)
T PLN02191 259 VVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKP---NTTQALTILNYVTAPASKLPSSPPPV 335 (574)
T ss_pred EEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCC---CCCCceEEEEECCCCCCCCCCCCCCC
Confidence 999999999999999999999999999999999876559999997643221 123356999998754311 111111
Q ss_pred CCCCCCccccccCccccccccCCCCCCCCCCCCCCCcCccceeeEEEEecCCCcccCCeEEEEecCeeccCCCChhhhhh
Q 007635 328 APSDIYNQWAAMTQPRSIRQNTSASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPETPIRLAD 407 (595)
Q Consensus 328 ~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~ 407 (595)
.|.+++.... ......+......+.+.. ...++++.+.... ..++..+|++||++|..|++|+|++.
T Consensus 336 -~p~~~~~~~~----~~~~~~~~~~~~~~~~p~------~~~~~~~~~~~~~--~~~~~~~~~~n~~s~~~p~~P~L~~~ 402 (574)
T PLN02191 336 -TPRWDDFERS----KNFSKKIFSAMGSPSPPK------KYRKRLILLNTQN--LIDGYTKWAINNVSLVTPATPYLGSV 402 (574)
T ss_pred -CCcccccchh----hcccccccccccCCCCCC------cccceEEEecccc--eeCCeEEEEECcccCcCCCcchHHHH
Confidence 1211111110 111111111000011110 1123444443321 23456789999999999999998877
Q ss_pred cccCCCcccCCCCCC--CCC---------CCCCCceeeeeecCCcEEEEEEecCC------CCceeeeecCceEEEEeec
Q 007635 408 KYNVKGAYKLDFPNK--PLT---------RPPRTDRSLINATYKGFIEIILQNND------TKMQSFHMDGYSFFVVGMD 470 (595)
Q Consensus 408 ~~~~~g~~~~~~~~~--p~~---------~~~~~~~~v~~~~~g~~ve~vl~N~~------~~~HP~HlHG~~F~Vv~~~ 470 (595)
+++.++.|+.+.+.. +.. ...+.+++++.++.|++|||+|+|.+ ...||||||||+||||++|
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G 482 (574)
T PLN02191 403 KYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYG 482 (574)
T ss_pred hhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEec
Confidence 655555443321110 000 11234667889999999999999985 5689999999999999999
Q ss_pred ccccCCCC-CCCCCcCCCCcccEEEECCCcEEEEEEEeCCceeeeeeeccccceeccceeEEEEeCCCCCCCCCCCCCCC
Q 007635 471 FGIWTESN-RNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGVWNLRVENLDRWYLGQETYMKIVNPEENGDTEMGPPDN 549 (595)
Q Consensus 471 ~G~~~~~~-~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~W~~HCHil~h~~~Gm~~~~~V~~~~~~~~~~~~~P~~ 549 (595)
.|.|+++. ...+|+.||++|||+.|+++||++|||++||||+|+|||||+.|+..||+++|. +.+++ ..++|++
T Consensus 483 ~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~-e~~~~----~~~~p~~ 557 (574)
T PLN02191 483 DGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFA-EGLNR----IGKIPDE 557 (574)
T ss_pred CCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEe-cChhh----ccCCCcc
Confidence 99998632 346899999999999999999999999999999999999999999999998883 34433 2447889
Q ss_pred cccccccccCc
Q 007635 550 VLYCGALQSKQ 560 (595)
Q Consensus 550 ~~~cg~~~~~~ 560 (595)
.+.|+.+++..
T Consensus 558 ~~~C~~~~~~~ 568 (574)
T PLN02191 558 ALGCGLTKQFL 568 (574)
T ss_pred hhhhhcccccc
Confidence 99998765543
No 10
>PLN02604 oxidoreductase
Probab=100.00 E-value=3.4e-101 Score=848.66 Aligned_cols=527 Identities=28% Similarity=0.478 Sum_probs=404.9
Q ss_pred HHHHHHHHHHHhhcccccCceEEEEEEEEEEEeCCCCeeEEEEEECCCCCCceEEecCCCEEEEEEEeCC-CCCceeecC
Q 007635 10 FLVLPIHIALFSSLCFAEDDTIFYDFKVSYITASPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDL-DESLLMTWP 88 (595)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~dG~~~~~~~~Ng~~PGP~i~v~~Gd~v~v~v~N~l-~~~~siH~H 88 (595)
||+++|+++..++...+.+++|+|+|+|++..++|||++|++|+|||++|||+|++++||+|+|+|+|++ +++++||||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~H 83 (566)
T PLN02604 4 FLALFFLLFSVLNFPAAEARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWH 83 (566)
T ss_pred hhhHHHHHHHHHHhhhccCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeC
Confidence 4555666666667777788999999999999999999999999999999999999999999999999998 589999999
Q ss_pred CCccCCCCCCCCCCC-CCCccCCCCeEEEEEEecCceeeeEEeccchhhhccCccccEEEccCCCCCCCCCCCCCceeEe
Q 007635 89 GIQMRRNSWQDGVQG-TNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNRKVIPIPFDQPEGDIIFL 167 (595)
Q Consensus 89 G~~~~~~~~~DGv~~-tq~~I~PG~~~tY~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~ 167 (595)
|++|.+++|+||+++ +||+|+||++|+|+|++ +++||||||||.+.|+.+||+|+|||+++...+.|+ .+|+|++|+
T Consensus 84 G~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~ 161 (566)
T PLN02604 84 GIRQIGTPWFDGTEGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYDYDRSII 161 (566)
T ss_pred CCCCCCCccccCCCccccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccCcceEEE
Confidence 999999999999998 99999999999999999 699999999999999999999999999976555566 468899999
Q ss_pred eeecccccHHHHHHHHhcC--CCCCCCceEEEccCCCCCCCCcc-----------CCCCCcceEEEecCCCEEEEEEEEc
Q 007635 168 IGDWYTRNHTALRTALDSG--KDLDMPDGVLINGKGPYRYNTTL-----------VPDGIEYETINVDPGKTYRVRVHNV 234 (595)
Q Consensus 168 l~d~~~~~~~~~~~~~~~~--~~~~~~d~~liNG~~~~~~~~~~-----------~~~~~~~~~~~v~~G~~~rlRliN~ 234 (595)
|+||+|+...++....... ....++++++|||+++++|.... ....+..+.++|++||+|||||||+
T Consensus 162 l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa 241 (566)
T PLN02604 162 LTDWYHKSTYEQALGLSSIPFDWVGEPQSLLIQGKGRYNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRISSL 241 (566)
T ss_pred eeccccCCHHHHHHhhccCCCccCCCCCceEEcCCCCCCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEEec
Confidence 9999998765443322211 12246899999999998774221 0112345689999999999999999
Q ss_pred CCCceEEEEEeCccceeeeccCccccceeecEEEEcCCcEEEEEEEcCCCCCcceEEEEeeecccccccccceeEEEEEe
Q 007635 235 GTSTSLNFRIQNHNLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHY 314 (595)
Q Consensus 235 ~~~~~~~~~i~gh~~~vi~~DG~~~~p~~~~~l~i~pG~R~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y 314 (595)
|..+.+.|+|+||+|+|||+||.+++|++++.|.|++||||||+|++++.++++||||+....... ....+.|||+|
T Consensus 242 ~~~~~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~---~~~~~~aIL~Y 318 (566)
T PLN02604 242 TALSALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNN---TTPPGLAIFNY 318 (566)
T ss_pred cccceEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCC---CCcceeEEEEE
Confidence 999999999999999999999999999999999999999999999999876558999986543221 12567899999
Q ss_pred cCCCCCCCCC-CCCCCCCCCccccccCccccccccCCCCCCCCCCCCCCCcCccceeeEEEEecCCCcccCCeEEEEecC
Q 007635 315 SNSKGAASGP-LPEAPSDIYNQWAAMTQPRSIRQNTSASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNG 393 (595)
Q Consensus 315 ~~~~~~~~~~-~p~~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg 393 (595)
++.....+.+ .+...+.+++.+...++...++.. .. ... . .....++++.+..... ..++..+|+|||
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~-~-------~~~~~d~~~~~~~~~~-~~~~~~~w~in~ 387 (566)
T PLN02604 319 YPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKAR-HG-YIH-P-------PPLTSDRVIVLLNTQN-EVNGYRRWSVNN 387 (566)
T ss_pred CCCCCCCCCCCCCCCCCcccccchhhcchhccccc-cc-CcC-C-------CCCCCCeEEEEecccc-ccCCeEEEEECc
Confidence 8643211111 000011111111111111010000 00 000 0 1123455555533221 234567899999
Q ss_pred eeccCCCChhhhhhcccCCCcccCC-CCCCC-----------CCCCCCCceeeeeecCCcEEEEEEecCC------CCce
Q 007635 394 ISFVKPETPIRLADKYNVKGAYKLD-FPNKP-----------LTRPPRTDRSLINATYKGFIEIILQNND------TKMQ 455 (595)
Q Consensus 394 ~s~~~p~~P~l~~~~~~~~g~~~~~-~~~~p-----------~~~~~~~~~~v~~~~~g~~ve~vl~N~~------~~~H 455 (595)
++|..|++|+|++.+...++.|+.+ .+..+ .+...+.+..++.++.|++||++|+|.+ ...|
T Consensus 388 ~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~H 467 (566)
T PLN02604 388 VSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNANNSETH 467 (566)
T ss_pred ccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccCCCCCCC
Confidence 9999889999877665555666432 11100 0112334567889999999999999985 4579
Q ss_pred eeeecCceEEEEeecccccCCCC-CCCCCcCCCCcccEEEECCCcEEEEEEEeCCceeeeeeeccccceeccceeEEEEe
Q 007635 456 SFHMDGYSFFVVGMDFGIWTESN-RNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGVWNLRVENLDRWYLGQETYMKIV 534 (595)
Q Consensus 456 P~HlHG~~F~Vv~~~~G~~~~~~-~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~W~~HCHil~h~~~Gm~~~~~V~ 534 (595)
|||||||+||||++|.|.|++.. ...+|+.||++|||+.|+++||++|||++||||.|+|||||+.|+..||+++|...
T Consensus 468 P~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~ 547 (566)
T PLN02604 468 PWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEEG 547 (566)
T ss_pred CEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCCEEEEeeC
Confidence 99999999999999999987643 45799999999999999999999999999999999999999999999999988644
Q ss_pred CCCCCCCCCCCCCCCcccccccc
Q 007635 535 NPEENGDTEMGPPDNVLYCGALQ 557 (595)
Q Consensus 535 ~~~~~~~~~~~~P~~~~~cg~~~ 557 (595)
+++ ..++|..++.|+..+
T Consensus 548 -~~~----~~~~p~~~~~C~~~~ 565 (566)
T PLN02604 548 -IER----VGKLPSSIMGCGESK 565 (566)
T ss_pred -hhh----ccCCCCCcCccccCC
Confidence 333 357888999998554
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=2.5e-99 Score=831.62 Aligned_cols=502 Identities=27% Similarity=0.514 Sum_probs=386.9
Q ss_pred eEEEEEEEEEEEeCCCCeeEEEEEECCCCCCceEEecCCCEEEEEEEeCCC-CCceeecCCCccCCCCCCCCCCC-CCCc
Q 007635 30 TIFYDFKVSYITASPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLD-ESLLMTWPGIQMRRNSWQDGVQG-TNCP 107 (595)
Q Consensus 30 ~~~~~~~v~~~~~~~dG~~~~~~~~Ng~~PGP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-tq~~ 107 (595)
+|+|+|+|++..++|||++|.+++|||++|||+|++++||+|+|+|+|+|+ ++++|||||++|.+++||||+++ +||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 489999999999999999999999999999999999999999999999995 89999999999999999999998 9999
Q ss_pred cCCCCeEEEEEEecCceeeeEEeccchhhhccCccccEEEccCCCCCCCCCCCCCceeEeeeecccccHHHHHHHHhc--
Q 007635 108 IPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNRKVIPIPFDQPEGDIIFLIGDWYTRNHTALRTALDS-- 185 (595)
Q Consensus 108 I~PG~~~tY~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~~-- 185 (595)
|+||++|+|+|++ +|+||||||||.+.|+++||+|+|||+++..++.++ .+|+|++|+|+||+++...+.......
T Consensus 81 I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 158 (541)
T TIGR03388 81 INPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKP 158 (541)
T ss_pred cCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCC
Confidence 9999999999999 589999999999999999999999999986545555 468999999999999876543222221
Q ss_pred CCCCCCCceEEEccCCCCCCCCccC-------------CCCCcceEEEecCCCEEEEEEEEcCCCceEEEEEeCccceee
Q 007635 186 GKDLDMPDGVLINGKGPYRYNTTLV-------------PDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLV 252 (595)
Q Consensus 186 ~~~~~~~d~~liNG~~~~~~~~~~~-------------~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi 252 (595)
.....+++.++|||+++++|..... ...+....++|++|++|||||||++..+.+.|+|+||+|+||
T Consensus 159 ~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VI 238 (541)
T TIGR03388 159 MRWIGEPQSLLINGRGQFNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVV 238 (541)
T ss_pred CcCCCCCcceEECCCCCCCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEEEE
Confidence 1122568999999999887743210 112234569999999999999999999999999999999999
Q ss_pred eccCccccceeecEEEEcCCcEEEEEEEcCCCCCcceEEEEeeecccccccccceeEEEEEecCCCCCC--CCCCCCCCC
Q 007635 253 ETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGAA--SGPLPEAPS 330 (595)
Q Consensus 253 ~~DG~~~~p~~~~~l~i~pG~R~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~--~~~~p~~~p 330 (595)
|+||.+++|..++.|.|++||||||+|++++.++++||||+....... ......|||+|.+..... ..+.|. .|
T Consensus 239 a~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~~---~~~~~~aiL~Y~~~~~~~~p~~~~~~-~p 314 (541)
T TIGR03388 239 EADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRKP---NTPPGLTVLNYYPNSPSRLPPTPPPV-TP 314 (541)
T ss_pred EeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCCC---CCccEEEEEEECCCCCCCCCCCCCCC-CC
Confidence 999999999999999999999999999999876558999987643211 224578999998754211 011111 12
Q ss_pred CCCccccccCccccccccCCCCCCCCCCCCCCCcCccceeeEEEEecCCCcccCCeEEEEecCeeccCCCChhhhhhccc
Q 007635 331 DIYNQWAAMTQPRSIRQNTSASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPETPIRLADKYN 410 (595)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~ 410 (595)
.+.+.... ......+......+.|. ...++++.+..... ..++..+|++||++|..|+.|+|.+.+++
T Consensus 315 ~~~~~~~~----~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~n~~s~~~p~~p~l~~~~~~ 382 (541)
T TIGR03388 315 AWDDFDRS----KAFSLAIKAAMGSPKPP-------ETSDRRIVLLNTQN-KINGYTKWAINNVSLTLPHTPYLGSLKYN 382 (541)
T ss_pred Cccccchh----hccchhhhccccCCCCC-------CCCCcEEEEeccCc-ccCceEEEEECcccCCCCCccHHHHHhhc
Confidence 11111100 00000010000011111 12345544433221 23456789999999998999998877654
Q ss_pred CCCcccCCCC-----------CCCCCCCCCCceeeeeecCCcEEEEEEecCC------CCceeeeecCceEEEEeecccc
Q 007635 411 VKGAYKLDFP-----------NKPLTRPPRTDRSLINATYKGFIEIILQNND------TKMQSFHMDGYSFFVVGMDFGI 473 (595)
Q Consensus 411 ~~g~~~~~~~-----------~~p~~~~~~~~~~v~~~~~g~~ve~vl~N~~------~~~HP~HlHG~~F~Vv~~~~G~ 473 (595)
.+++++.+.+ ..+.....+.++.++.++.|++|||+|+|.+ ...||||||||+||||++|.|.
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~ 462 (541)
T TIGR03388 383 LLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGK 462 (541)
T ss_pred CCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCC
Confidence 4444432100 0011112345678899999999999999974 4679999999999999999999
Q ss_pred cCCC-CCCCCCcCCCCcccEEEECCCcEEEEEEEeCCceeeeeeeccccceeccceeEEEEeCCCCCCCCCCCCCCCccc
Q 007635 474 WTES-NRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGVWNLRVENLDRWYLGQETYMKIVNPEENGDTEMGPPDNVLY 552 (595)
Q Consensus 474 ~~~~-~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~W~~HCHil~h~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~ 552 (595)
|+.+ ....+|+.||++|||+.|+++||++|||++||||.|+|||||+.|+..||+++|... +++ ...+|++++.
T Consensus 463 ~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~-~~~----~~~~P~~~~~ 537 (541)
T TIGR03388 463 FRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG-VEK----VGKLPKEALG 537 (541)
T ss_pred CCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEecc-ccc----cCCCCccccC
Confidence 8754 234699999999999999999999999999999999999999999999999998543 333 3568999999
Q ss_pred cc
Q 007635 553 CG 554 (595)
Q Consensus 553 cg 554 (595)
||
T Consensus 538 C~ 539 (541)
T TIGR03388 538 CG 539 (541)
T ss_pred CC
Confidence 97
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=4.6e-97 Score=811.30 Aligned_cols=491 Identities=22% Similarity=0.384 Sum_probs=373.2
Q ss_pred EEEEEEEEEEEeCCCCeeEEEEEECCCCCCceEEecCCCEEEEEEEeCCC-CCceeecCCCccCCCCCCCCCCC-CCCcc
Q 007635 31 IFYDFKVSYITASPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLD-ESLLMTWPGIQMRRNSWQDGVQG-TNCPI 108 (595)
Q Consensus 31 ~~~~~~v~~~~~~~dG~~~~~~~~Ng~~PGP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-tq~~I 108 (595)
-.|+|+|++..+++||+.|.+++|||++|||+|++++||+|+|+|+|+|+ ++++|||||++|++++||||+|+ |||||
T Consensus 9 ~~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI 88 (538)
T TIGR03390 9 PDHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPI 88 (538)
T ss_pred ccEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCC
Confidence 47999999999999999999999999999999999999999999999997 89999999999999999999999 99999
Q ss_pred CCCCeEEEEEEec-CceeeeEEeccchhhhccCccccEEEccCCCCCCCCCCCCCceeEeeeecccccHHHHHHHHhcC-
Q 007635 109 PSQWNWTYQFQVK-DQIGSFFYFPSLNLQRVSGGFGPVIINNRKVIPIPFDQPEGDIIFLIGDWYTRNHTALRTALDSG- 186 (595)
Q Consensus 109 ~PG~~~tY~f~~~-~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~~~- 186 (595)
+||++|+|+|+++ +|+||||||||.+.|+. ||+|+|||+++... ++ .+|+|++|+|+||+++...++...+...
T Consensus 89 ~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~-~l~G~lIV~~~~~~--~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 164 (538)
T TIGR03390 89 PPGHFFDYEIKPEPGDAGSYFYHSHVGFQAV-TAFGPLIVEDCEPP--PY-KYDDERILLVSDFFSATDEEIEQGLLSTP 164 (538)
T ss_pred CCCCcEEEEEEecCCCCeeeEEecCCchhhh-cceeEEEEccCCcc--CC-CccCcEEEEEeCCCCCCHHHHHhhhhccC
Confidence 9999999999985 58999999999999987 59999999987543 34 4589999999999999876654333222
Q ss_pred -CCCCCCceEEEccCCCCCCCCcc--CCCCCcceEEEecCCCEEEEEEEEcCCCceEEEEEeCcc-ceeeeccCccccce
Q 007635 187 -KDLDMPDGVLINGKGPYRYNTTL--VPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHN-LLLVETEGHYTSQQ 262 (595)
Q Consensus 187 -~~~~~~d~~liNG~~~~~~~~~~--~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~-~~vi~~DG~~~~p~ 262 (595)
....+++++||||++.+.|.... ....|..+.++|++||+|||||||+|..+.+.|+|+||+ |+|||+||.+++|+
T Consensus 165 ~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~ 244 (538)
T TIGR03390 165 FTWSGETEAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPA 244 (538)
T ss_pred CccCCCCceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCce
Confidence 12356789999999865542211 111345689999999999999999999999999999999 99999999999999
Q ss_pred eecEEEEcCCcEEEEEEEcCCC-------CCcceEEEEeeecccccccccceeEEEEEecCCCCCCCCCCCCCCCCCCcc
Q 007635 263 NYTSFEIHVGQSYSFLVTMDQN-------ASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGAASGPLPEAPSDIYNQ 335 (595)
Q Consensus 263 ~~~~l~i~pG~R~dvlv~~~~~-------~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~~p~~~~~ 335 (595)
.++.|.|++||||||+|++++. ++ +||||+.....++ ....+|||+|++.........|. .|. .
T Consensus 245 ~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~-~Y~ir~~~~~~~~----~~~~~aiL~Y~~~~~~~~~~~p~-~~~---~ 315 (538)
T TIGR03390 245 KIDHLQLGGGQRYSVLFKAKTEDELCGGDKR-QYFIQFETRDRPK----VYRGYAVLRYRSDKASKLPSVPE-TPP---L 315 (538)
T ss_pred EeCeEEEccCCEEEEEEECCCccccccCCCC-cEEEEEeecCCCC----cceEEEEEEeCCCCCCCCCCCCC-CCC---C
Confidence 9999999999999999999975 35 9999997643322 25678999997653211111111 111 0
Q ss_pred ccccCccccccccCCCCCCCCCCCCCCCcCccceeeEEEEecCCCc-ccCCeEEEEecCeeccC--CCChhhhhhcccCC
Q 007635 336 WAAMTQPRSIRQNTSASGARPNPQGSFHYGSINITDTYVLRSLPPV-TIDGKVRSTLNGISFVK--PETPIRLADKYNVK 412 (595)
Q Consensus 336 ~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~-~~~g~~~~~iNg~s~~~--p~~P~l~~~~~~~~ 412 (595)
..........+.++.+......+. +. ....+++++.+...... ..++..+|++||++|.. |++|+|...+.+..
T Consensus 316 ~~~~~~~~~~~~~l~pl~~~~~~~--~~-~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~ 392 (538)
T TIGR03390 316 PLPNSTYDWLEYELEPLSEENNQD--FP-TLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGL 392 (538)
T ss_pred CccCcchhhhheeeEecCccccCC--CC-CCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCC
Confidence 000000000011222211110000 00 01245677766654321 12567899999999985 78999876543210
Q ss_pred CcccCCCCCCCCCCCCCCceeeeeecCCcEEEEEEecCC--------CCceeeeecCceEEEEeecccccCCCC-CCCCC
Q 007635 413 GAYKLDFPNKPLTRPPRTDRSLINATYKGFIEIILQNND--------TKMQSFHMDGYSFFVVGMDFGIWTESN-RNSYN 483 (595)
Q Consensus 413 g~~~~~~~~~p~~~~~~~~~~v~~~~~g~~ve~vl~N~~--------~~~HP~HlHG~~F~Vv~~~~G~~~~~~-~~~~n 483 (595)
... ..+...+.......+++++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|++.. ...+|
T Consensus 393 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~n 471 (538)
T TIGR03390 393 PAT-PNYTAALANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLE 471 (538)
T ss_pred CcC-CCcccccccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhc
Confidence 000 00000000111223566788999999999999974 468999999999999999999998643 23588
Q ss_pred cCCCCcccEEEEC----------CCcEEEEEEEeCCceeeeeeeccccceeccceeEEEEeCCCC
Q 007635 484 KWDAISKCTTEVY----------PGAWTAILVSLDNVGVWNLRVENLDRWYLGQETYMKIVNPEE 538 (595)
Q Consensus 484 ~~~p~~RDTv~v~----------p~g~~~Irf~adNpG~W~~HCHil~h~~~Gm~~~~~V~~~~~ 538 (595)
+.||++|||+.|+ ++||++|||++||||+|+|||||..|..+||+++|.|.+.+.
T Consensus 472 l~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~ 536 (538)
T TIGR03390 472 NYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGDAED 536 (538)
T ss_pred cCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeCChHH
Confidence 9999999999996 789999999999999999999999999999999999876543
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=1.5e-78 Score=664.12 Aligned_cols=429 Identities=21% Similarity=0.295 Sum_probs=321.9
Q ss_pred EEEEEEEEEEEeCCCCeeEEEEEECCCCCCceEEecCCCEEEEEEEeCCCCCceeecCCCccCCCCCCCCCCC-CCCccC
Q 007635 31 IFYDFKVSYITASPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQG-TNCPIP 109 (595)
Q Consensus 31 ~~~~~~v~~~~~~~dG~~~~~~~~Ng~~PGP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~-tq~~I~ 109 (595)
++|+|++++..+.++|+.+.+|+|||++|||+|++++||+|+|+|+|+|+++++|||||+++. +++||+|+ |||+|+
T Consensus 46 ~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~--~~~DGvP~vt~~~I~ 123 (587)
T TIGR01480 46 TEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLP--FQMDGVPGVSFAGIA 123 (587)
T ss_pred ceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCC--ccccCCCcccccccC
Confidence 799999999999999999999999999999999999999999999999999999999999875 67999998 999999
Q ss_pred CCCeEEEEEEecCceeeeEEeccchhhhccCccccEEEccCCCCCCCCCCCCCceeEeeeecccccHHHHHHHHh-----
Q 007635 110 SQWNWTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNRKVIPIPFDQPEGDIIFLIGDWYTRNHTALRTALD----- 184 (595)
Q Consensus 110 PG~~~tY~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~----- 184 (595)
||++|+|+|++ .++||||||||...|+.+||+|+|||++++..+ + .+|+|++|+|+||++.+...+...+.
T Consensus 124 PG~s~~Y~f~~-~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p--~-~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~ 199 (587)
T TIGR01480 124 PGETFTYRFPV-RQSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDP--V-RADREHVVLLSDWTDLDPAALFRKLKVMAGH 199 (587)
T ss_pred CCCeEEEEEEC-CCCeeEEEecCchhHhhccceEEEEECCCcccc--C-CCCceEEEEeeecccCCHHHHHHhhhccccc
Confidence 99999999999 489999999999999999999999999865433 3 45899999999999875444321110
Q ss_pred -----------------cCC---------C-------C------CCCceEEEccCCCCCCCCccCCCCCcceEEEecCCC
Q 007635 185 -----------------SGK---------D-------L------DMPDGVLINGKGPYRYNTTLVPDGIEYETINVDPGK 225 (595)
Q Consensus 185 -----------------~~~---------~-------~------~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~ 225 (595)
.|. . . .....+||||+... ..+++.+++|+
T Consensus 200 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~~-----------~~~~~~v~~G~ 268 (587)
T TIGR01480 200 DNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTPA-----------GNWTGLFRPGE 268 (587)
T ss_pred ccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccCC-----------CCceEEECCCC
Confidence 010 0 0 01124789998741 24679999999
Q ss_pred EEEEEEEEcCCCceEEEEEeCccceeeeccCccccceeecEEEEcCCcEEEEEEEcCCCCCcceEEEEeeeccccccccc
Q 007635 226 TYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASARFVNESFWQR 305 (595)
Q Consensus 226 ~~rlRliN~~~~~~~~~~i~gh~~~vi~~DG~~~~p~~~~~l~i~pG~R~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~ 305 (595)
+|||||||+|+.+.+.|+|+||+|+||++||.+++|..++.+.|++||||||+|++++ .| .|+|++......
T Consensus 269 rvRLR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~~-~g-~~~i~a~~~~~~------ 340 (587)
T TIGR01480 269 KVRLRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPTG-DD-AFTIFAQDSDRT------ 340 (587)
T ss_pred EEEEEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecCC-Cc-eEEEEEEecCCC------
Confidence 9999999999999999999999999999999999999999999999999999999873 45 899998764321
Q ss_pred ceeEEEEEecCCCCCCCCCCCCCCCC--CCcccc-c---------cCc--ccccc---------------ccCCC--CCC
Q 007635 306 VTGVAILHYSNSKGAASGPLPEAPSD--IYNQWA-A---------MTQ--PRSIR---------------QNTSA--SGA 354 (595)
Q Consensus 306 ~~~~~il~y~~~~~~~~~~~p~~~p~--~~~~~~-~---------~~~--~~~~~---------------~~l~~--~~~ 354 (595)
....++|++.+.......+++. .|. ..+... . +.. ..... .+... ..+
T Consensus 341 ~~~~~~l~~~~~~~~~~p~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (587)
T TIGR01480 341 GYARGTLAVRLGLTAPVPALDP-RPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKHP 419 (587)
T ss_pred ceEEEEEecCCCCCCCCCCCCC-ccccChhhcccccccccccccccccCcccccCccccccccccCccccccccccccCc
Confidence 3566788876532111111111 010 000000 0 000 00000 00000 000
Q ss_pred ------------CCCCC---------------CCC----------CcCccceeeEEEEecCCCcccCCeEEEEecCeecc
Q 007635 355 ------------RPNPQ---------------GSF----------HYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFV 397 (595)
Q Consensus 355 ------------~p~p~---------------~~~----------~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~ 397 (595)
.+.|. ... ......++|++.+..+ .......|+|||..|.
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~---g~m~~~~wtiNG~~~~ 496 (587)
T TIGR01480 420 ASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLT---GNMERFAWSFDGEAFG 496 (587)
T ss_pred ccccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEc---CCCceeEEEECCccCC
Confidence 00000 000 0011234566655543 1223556999998753
Q ss_pred CCCChhhhhhcccCCCcccCCCCCCCCCCCCCCceeeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCC
Q 007635 398 KPETPIRLADKYNVKGAYKLDFPNKPLTRPPRTDRSLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTES 477 (595)
Q Consensus 398 ~p~~P~l~~~~~~~~g~~~~~~~~~p~~~~~~~~~~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~ 477 (595)
+ ...+.++.|+.|+|.|.|...+.||||||||.|+++..+ |.+
T Consensus 497 ~---------------------------------~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~-G~~--- 539 (587)
T TIGR01480 497 L---------------------------------KTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQ-GEF--- 539 (587)
T ss_pred C---------------------------------CCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCC-Ccc---
Confidence 1 012458899999999999999999999999999998764 321
Q ss_pred CCCCCCcCCCCcccEEEECCCcEEEEEEEeCCceeeeeeeccccceeccceeEEEEe
Q 007635 478 NRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGVWNLRVENLDRWYLGQETYMKIV 534 (595)
Q Consensus 478 ~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~W~~HCHil~h~~~Gm~~~~~V~ 534 (595)
+.++||+.|+|++.+.++|.+||||.|+||||++.|++.||+..++|.
T Consensus 540 ---------~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 540 ---------QVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred ---------cccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 568899999999999999999999999999999999999999999873
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=2.5e-74 Score=626.55 Aligned_cols=416 Identities=17% Similarity=0.184 Sum_probs=300.9
Q ss_pred eEEEEEEEEEEEeCCCCee-EEEEEECCCCCCceEEecCCCEEEEEEEeCCCCCceeecCCCccCCCCCCCCCCCCCCcc
Q 007635 30 TIFYDFKVSYITASPLGVP-QQVIAINGKFPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPI 108 (595)
Q Consensus 30 ~~~~~~~v~~~~~~~dG~~-~~~~~~Ng~~PGP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I 108 (595)
...|+|++++...+++|.. .++|+|||++|||+||+++||+|+|+|+|+|+++|+|||||+++.+ .+||+| ||+|
T Consensus 45 ~~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~--~~DG~p--q~~I 120 (523)
T PRK10965 45 RGRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPG--EVDGGP--QGII 120 (523)
T ss_pred CccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCCC--ccCCCC--CCCC
Confidence 3469999999999997544 5799999999999999999999999999999999999999999875 499987 8999
Q ss_pred CCCCeEEEEEEecCceeeeEEeccc----hhhhccCccccEEEccCCCCCCCCC--CCCCceeEeeeecccccHHHHHHH
Q 007635 109 PSQWNWTYQFQVKDQIGSFFYFPSL----NLQRVSGGFGPVIINNRKVIPIPFD--QPEGDIIFLIGDWYTRNHTALRTA 182 (595)
Q Consensus 109 ~PG~~~tY~f~~~~~~Gt~wYH~H~----~~q~~~Gl~G~liV~~~~~~~~~~~--~~d~e~~l~l~d~~~~~~~~~~~~ 182 (595)
+||++|+|+|++++++||||||||. +.|+.+||+|+|||+++.+.+.+++ ...+|++|+|+||+++....+...
T Consensus 121 ~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~~ 200 (523)
T PRK10965 121 APGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDYQ 200 (523)
T ss_pred CCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceecc
Confidence 9999999999996568999999995 7999999999999999765432222 234689999999999765543221
Q ss_pred HhcC--CCCCCCceEEEccCCCCCCCCccCCCCCcceEEEecCCCEEEEEEEEcCCCceEEEEE-eCccceeeeccCccc
Q 007635 183 LDSG--KDLDMPDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRI-QNHNLLLVETEGHYT 259 (595)
Q Consensus 183 ~~~~--~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i-~gh~~~vi~~DG~~~ 259 (595)
.+.. .....+|.++|||+.+ |.+.++ +++|||||||+|+.+.+.|++ ++|+|+|||+||+++
T Consensus 201 ~~~~~~~~g~~gd~~lVNG~~~--------------p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l 265 (523)
T PRK10965 201 LDVMTAAVGWFGDTLLTNGAIY--------------PQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLL 265 (523)
T ss_pred ccccccccCccCCeEEECCccc--------------ceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcc
Confidence 1111 1234678999999986 778875 579999999999999999998 899999999999987
Q ss_pred -cceeecEEEEcCCcEEEEEEEcCCCCCcceEEEEeeecccc-cccccceeEEEEEecCCCCCCCCCCCCCCCCCCcccc
Q 007635 260 -SQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASARFVNE-SFWQRVTGVAILHYSNSKGAASGPLPEAPSDIYNQWA 337 (595)
Q Consensus 260 -~p~~~~~l~i~pG~R~dvlv~~~~~~g~~y~i~~~~~~~~~-~~~~~~~~~~il~y~~~~~~~~~~~p~~~p~~~~~~~ 337 (595)
+|..+++|.|+|||||||+|++++ .+ +|++.+....... ..........++++.........++|........
T Consensus 266 ~~P~~v~~l~lapGeR~dvlv~~~~-~~-~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~--- 340 (523)
T PRK10965 266 AEPVKVSELPILMGERFEVLVDTSD-GK-AFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPA--- 340 (523)
T ss_pred cCccEeCeEEECccceEEEEEEcCC-Cc-eEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCChhhccCCC---
Confidence 699999999999999999999985 45 8998875432110 0000011334555543221111122220000000
Q ss_pred ccCccccccccCCCCCCCCCCCCCCCcCccceeeEEEEecCC----------------------------Ccc-------
Q 007635 338 AMTQPRSIRQNTSASGARPNPQGSFHYGSINITDTYVLRSLP----------------------------PVT------- 382 (595)
Q Consensus 338 ~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~----------------------------~~~------- 382 (595)
.+.+. ....|++.+.... ...
T Consensus 341 -----------------~~~~~-------~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (523)
T PRK10965 341 -----------------LPSLE-------GLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDH 396 (523)
T ss_pred -----------------CCccc-------ccceeEEEEeeccccchhhhhhccccccccccccccccccccccccccccc
Confidence 00000 0001111111100 000
Q ss_pred -c-----CCe-----EEEEecCeeccCCCChhhhhhcccCCCcccCCCCCCCCCCCCCCceeeeeecCCcEEEEEEecCC
Q 007635 383 -I-----DGK-----VRSTLNGISFVKPETPIRLADKYNVKGAYKLDFPNKPLTRPPRTDRSLINATYKGFIEIILQNND 451 (595)
Q Consensus 383 -~-----~g~-----~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~~~~~p~~~~~~~~~~v~~~~~g~~ve~vl~N~~ 451 (595)
. .+. ..|+|||++|... ...+.++.|++++|.|.|.+
T Consensus 397 ~~~~~~~~~~~~~~~~~~~ING~~~~~~--------------------------------~~~~~~~~G~~e~w~i~N~~ 444 (523)
T PRK10965 397 MNHGAADAGPAFDFHHANKINGKAFDMN--------------------------------KPMFAAKKGQYERWVISGVG 444 (523)
T ss_pred cccccccccccccccccccCCCeECCCC--------------------------------CcceecCCCCEEEEEEEeCC
Confidence 0 000 1247777776321 11245789999999999988
Q ss_pred C-CceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEe----CCceeeeeeeccccceecc
Q 007635 452 T-KMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSL----DNVGVWNLRVENLDRWYLG 526 (595)
Q Consensus 452 ~-~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~a----dNpG~W~~HCHil~h~~~G 526 (595)
. ..|||||||++|+|+++++... ...++.|||||.|++ +.+.|++++ |++|.|+||||||+|++.|
T Consensus 445 ~~~~Hp~HlHg~~F~Vl~~~g~~~--------~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed~G 515 (523)
T PRK10965 445 DMMLHPFHIHGTQFRILSENGKPP--------AAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHEDTG 515 (523)
T ss_pred CCCccCeEEeCcEEEEEEecCCCC--------CccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhccC
Confidence 5 6899999999999999964321 112368999999988 667766665 4677999999999999999
Q ss_pred ceeEEEEe
Q 007635 527 QETYMKIV 534 (595)
Q Consensus 527 m~~~~~V~ 534 (595)
||..|.|.
T Consensus 516 MM~~~~V~ 523 (523)
T PRK10965 516 MMLGFTVS 523 (523)
T ss_pred ccceeEeC
Confidence 99999874
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=3e-72 Score=605.35 Aligned_cols=404 Identities=15% Similarity=0.174 Sum_probs=294.4
Q ss_pred EEEEEEEEEEeCCC-CeeEEEEEECCCCCCceEEecCCCEEEEEEEeCCCCCceeecCCCccCCCCCCCCCCCCCCccCC
Q 007635 32 FYDFKVSYITASPL-GVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPS 110 (595)
Q Consensus 32 ~~~~~v~~~~~~~d-G~~~~~~~~Ng~~PGP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~P 110 (595)
.++|+++.....++ |.++++|+|||++|||+||+++||+|+|+|+|+|+++|+|||||+++... .+||++ ++|+|
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~---~~I~P 122 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA---RMMSP 122 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc---ccCCC
Confidence 37999999998888 56789999999999999999999999999999999999999999998765 577755 88999
Q ss_pred CCeEEEEEEecCceeeeEEeccc----hhhhccCccccEEEccCCCCCCCCC-C-CCCceeEeeeecccccHHHHHHHHh
Q 007635 111 QWNWTYQFQVKDQIGSFFYFPSL----NLQRVSGGFGPVIINNRKVIPIPFD-Q-PEGDIIFLIGDWYTRNHTALRTALD 184 (595)
Q Consensus 111 G~~~tY~f~~~~~~Gt~wYH~H~----~~q~~~Gl~G~liV~~~~~~~~~~~-~-~d~e~~l~l~d~~~~~~~~~~~~~~ 184 (595)
|++|+|+|++.+++||||||||. +.|+.+||+|+|||+++.+.+.+++ . ..+|++|+|+||+++....... ..
T Consensus 123 G~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~-~~ 201 (471)
T PRK10883 123 NADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEY-NE 201 (471)
T ss_pred CCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCccc-cc
Confidence 99999999987679999999994 4699999999999999765433332 2 3459999999999875443211 11
Q ss_pred cCCCCCCCceEEEccCCCCCCCCccCCCCCcceEEEecCCCEEEEEEEEcCCCceEEEEE-eCccceeeeccCccc-cce
Q 007635 185 SGKDLDMPDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRI-QNHNLLLVETEGHYT-SQQ 262 (595)
Q Consensus 185 ~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i-~gh~~~vi~~DG~~~-~p~ 262 (595)
.......+|.++|||+.. |.++|++| +|||||||+|+.+.+.|+| ++|+|+||++||+++ +|.
T Consensus 202 ~~~~g~~gd~~lvNG~~~--------------p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~ 266 (471)
T PRK10883 202 PGSGGFVGDTLLVNGVQS--------------PYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPV 266 (471)
T ss_pred cccCCccCCeeEECCccC--------------CeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCc
Confidence 122235678999999986 78999875 7999999999999999999 899999999997776 699
Q ss_pred eecEEEEcCCcEEEEEEEcCCCCCcceEEEEeeecccc----ccccc---ceeEEEEEecCCCCCCCCCCCCCCCCCCcc
Q 007635 263 NYTSFEIHVGQSYSFLVTMDQNASSDYYIVASARFVNE----SFWQR---VTGVAILHYSNSKGAASGPLPEAPSDIYNQ 335 (595)
Q Consensus 263 ~~~~l~i~pG~R~dvlv~~~~~~g~~y~i~~~~~~~~~----~~~~~---~~~~~il~y~~~~~~~~~~~p~~~p~~~~~ 335 (595)
.++++.|+|||||||+|++++ .+ .+.+.+....... ..... .....+++....... ...+...|
T Consensus 267 ~~~~l~l~pGeR~dvlVd~~~-~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p----- 337 (471)
T PRK10883 267 SVKQLSLAPGERREILVDMSN-GD-EVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLL--PLVTDNLP----- 337 (471)
T ss_pred EeCeEEECCCCeEEEEEECCC-Cc-eEEEECCCccccccccccccCCccccccceeEEEEccccc--cCCCCcCC-----
Confidence 999999999999999999975 33 6666553211000 00000 001122332211100 00000000
Q ss_pred ccccCccccccccCCCCCCCCCCCCCCCcCccceeeEEEEecCCCcccCCeEEEEecCeeccCCCChhhhhhcccCCCcc
Q 007635 336 WAAMTQPRSIRQNTSASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPETPIRLADKYNVKGAY 415 (595)
Q Consensus 336 ~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~ 415 (595)
..+.+.. +.+. ...-++++.+.. ..|.|||++|.+..
T Consensus 338 -----------~~l~~~~--~~~~------~~~~~~~~~l~~---------~~~~INg~~~~~~~--------------- 374 (471)
T PRK10883 338 -----------MRLLPDE--IMEG------SPIRSREISLGD---------DLPGINGALWDMNR--------------- 374 (471)
T ss_pred -----------hhhcCCC--CCCC------CCcceEEEEecC---------CcCccCCcccCCCc---------------
Confidence 0000000 0000 011123333321 13679999874211
Q ss_pred cCCCCCCCCCCCCCCceeeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEE
Q 007635 416 KLDFPNKPLTRPPRTDRSLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEV 495 (595)
Q Consensus 416 ~~~~~~~p~~~~~~~~~~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v 495 (595)
..+.++.|++++|.|.|. +.|||||||+.|||+++++.... ..+..|||||.|
T Consensus 375 -----------------~~~~~~~g~~e~W~~~n~--~~HP~HlHg~~FqVl~~~G~~~~--------~~~~gwkDTV~v 427 (471)
T PRK10883 375 -----------------IDVTAQQGTWERWTVRAD--MPQAFHIEGVMFLIRNVNGAMPF--------PEDRGWKDTVWV 427 (471)
T ss_pred -----------------ceeecCCCCEEEEEEECC--CCcCEeECCccEEEEEecCCCCC--------ccccCcCcEEEc
Confidence 013468999999999886 68999999999999999643111 122479999999
Q ss_pred CCCcEEEEEEEeCCce----eeeeeeccccceeccceeEEEEeCC
Q 007635 496 YPGAWTAILVSLDNVG----VWNLRVENLDRWYLGQETYMKIVNP 536 (595)
Q Consensus 496 ~p~g~~~Irf~adNpG----~W~~HCHil~h~~~Gm~~~~~V~~~ 536 (595)
+ +.+.|++++|++| .||||||||+|+|.|||..|+|..|
T Consensus 428 ~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~~ 470 (471)
T PRK10883 428 D--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNPA 470 (471)
T ss_pred C--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEecC
Confidence 6 4599999999988 8999999999999999999999753
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=7e-58 Score=495.81 Aligned_cols=400 Identities=20% Similarity=0.237 Sum_probs=287.6
Q ss_pred CCCCeeEEEEEECCCCCCceEEecCCCEEEEEEEeCCCCCceeecCCCccCCCCCCCCCCC-CCCccCCCCeEEEEEEec
Q 007635 43 SPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQG-TNCPIPSQWNWTYQFQVK 121 (595)
Q Consensus 43 ~~dG~~~~~~~~Ng~~PGP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~-tq~~I~PG~~~tY~f~~~ 121 (595)
..++.....+++||++|||+|++++||+|+|+++|+|.++|++||||+..+ +.+||++. +++++.||++++|.|+.
T Consensus 46 ~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p--~~~dG~~~~~~~~~~~~~~~~y~f~~- 122 (451)
T COG2132 46 FAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVP--GEMDGVPPLTQIPPGPGETPTYTFTQ- 122 (451)
T ss_pred eecCCCceeEEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccC--ccccCCCcccccCCCCCCcEEEeecC-
Confidence 345677889999999999999999999999999999988899999998776 78999988 99999999999999999
Q ss_pred CceeeeEEeccchhhhccCccccEEEccCCCCCCCCCCCCCceeEeeeecccccHHHHHHHHhcCCCCCCCceEEEccCC
Q 007635 122 DQIGSFFYFPSLNLQRVSGGFGPVIINNRKVIPIPFDQPEGDIIFLIGDWYTRNHTALRTALDSGKDLDMPDGVLINGKG 201 (595)
Q Consensus 122 ~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~ 201 (595)
+++||||||+|...|+.+||+|++||++....+. .+|++..++..+|+.......... .........+..+|||..
T Consensus 123 ~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~---~~d~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~vnG~~ 198 (451)
T COG2132 123 DVPGTYWYHPHTHGQVYDGLAGALIIEDENSEPL---GVDDEPVILQDDWLDEDGTDLYQE-GPAMGGFPGDTLLVNGAI 198 (451)
T ss_pred CCCcceEeccCCCchhhcccceeEEEeCCCCCCC---CCCceEEEEEeeeecCCCCccccC-CccccCCCCCeEEECCCc
Confidence 4678999999999999999999999999765443 447777888888876543322111 011123456899999976
Q ss_pred CCCCCCccCCCCCcceEEEecCCCEEEEEEEEcCCCceEEEEEeCccceeeeccCccccceeecEEEEcCCcEEEEEEEc
Q 007635 202 PYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTM 281 (595)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi~~DG~~~~p~~~~~l~i~pG~R~dvlv~~ 281 (595)
. +.+.++. .+|||||+|+++.+.+.+++.+++|+||++||.++++..+|.+.|+|||||||++++
T Consensus 199 ~--------------p~~~~~~-g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~ 263 (451)
T COG2132 199 L--------------PFKAVPG-GVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDM 263 (451)
T ss_pred c--------------ceeecCC-CeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEc
Confidence 4 6566655 559999999998888999999999999999999999988999999999999999999
Q ss_pred CCCCCcceEEEEeeecccccccccceeEEEEEecCCCCCCCCCCCCC---CCCCCccccccCccccccccCCCCCCCCCC
Q 007635 282 DQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGAASGPLPEA---PSDIYNQWAAMTQPRSIRQNTSASGARPNP 358 (595)
Q Consensus 282 ~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~---~p~~~~~~~~~~~~~~~~~~l~~~~~~p~p 358 (595)
++ .+ .|.+.+......+ ...+......... .+.+.... .+. .+. ..... ...+.... ..+
T Consensus 264 ~~-~~-~~~l~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~d~---~~~~~--~~~~~~~~--~~~ 326 (451)
T COG2132 264 ND-GG-AVTLTALGEDMPD------TLKGFRAPNPILT-PSYPVLNGRVGAPT-GDM---ADHAP--VGLLVTIL--VEP 326 (451)
T ss_pred CC-CC-eEEEEeccccCCc------eeeeeeccccccc-cccccccccccCCC-cch---hhccc--cccchhhc--CCC
Confidence 85 34 6777765421111 1111111111000 00000000 000 000 00000 00000000 000
Q ss_pred CCCCCcCccceeeEEEEecCCCcccCCeEEEEecCeeccCCCChhhhhhcccCCCcccCCCCCCCCCCCCCCceeeeeec
Q 007635 359 QGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPETPIRLADKYNVKGAYKLDFPNKPLTRPPRTDRSLINAT 438 (595)
Q Consensus 359 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~~~~~p~~~~~~~~~~v~~~~ 438 (595)
. ...+..+.+. ...+...|.+|+..|.. +...+.++
T Consensus 327 ~-------~~~~~~~~l~-----~~~~~~~~~~n~~~~~~--------------------------------~~~~~~~~ 362 (451)
T COG2132 327 G-------PNRDTDFHLI-----GGIGGYVWAINGKAFDD--------------------------------NRVTLIAK 362 (451)
T ss_pred c-------ccccccchhh-----cccccccccccCccCCC--------------------------------CcCceeec
Confidence 0 0001111111 11123346677666532 11235678
Q ss_pred CCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCceeeeeeec
Q 007635 439 YKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGVWNLRVE 518 (595)
Q Consensus 439 ~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~W~~HCH 518 (595)
.|++++|+|.|.+.+.||||+||+.|+|++.+.. .-...+.||||+.+.++..++|+|.+|+||.|+||||
T Consensus 363 ~G~~~~~~i~n~~~~~HP~HlHg~~F~v~~~~~~---------~~~~~~~~kDTv~v~~~~~~~v~~~a~~~g~~~~HCH 433 (451)
T COG2132 363 AGTRERWVLTNDTPMPHPFHLHGHFFQVLSGDAP---------APGAAPGWKDTVLVAPGERLLVRFDADYPGPWMFHCH 433 (451)
T ss_pred CCCEEEEEEECCCCCccCeEEcCceEEEEecCCC---------cccccCccceEEEeCCCeEEEEEEeCCCCCceEEecc
Confidence 9999999999999999999999999999999611 1123379999999999999999999999999999999
Q ss_pred cccceeccceeEEEEe
Q 007635 519 NLDRWYLGQETYMKIV 534 (595)
Q Consensus 519 il~h~~~Gm~~~~~V~ 534 (595)
+++|++.|||..+.|.
T Consensus 434 ~l~H~~~Gm~~~~~v~ 449 (451)
T COG2132 434 ILEHEDNGMMGQFGVV 449 (451)
T ss_pred chhHhhcCCeeEEEec
Confidence 9999999999998875
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=4.4e-48 Score=396.53 Aligned_cols=265 Identities=16% Similarity=0.163 Sum_probs=218.0
Q ss_pred cccCceEEEEEEEEEEEeC-CCCeeEEEEEECCCCCCceEEecCCCEEEEEEEeCCC--CCceeecCCCccCCCCCCCCC
Q 007635 25 FAEDDTIFYDFKVSYITAS-PLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLD--ESLLMTWPGIQMRRNSWQDGV 101 (595)
Q Consensus 25 ~~~~~~~~~~~~v~~~~~~-~dG~~~~~~~~Ng~~PGP~i~v~~Gd~v~v~v~N~l~--~~~siH~HG~~~~~~~~~DGv 101 (595)
++...+++|+|++++.++. .+|+.+.+|+|||++|||+|++++||+|+|+|+|+++ .++++||||. .++||+
T Consensus 22 ~~~~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~-----~~~dg~ 96 (311)
T TIGR02376 22 RSGPKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAA-----TGALGG 96 (311)
T ss_pred cCCCcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCC-----CccCCC
Confidence 4566789999999999987 5799999999999999999999999999999999986 5889999997 258998
Q ss_pred CC-CCCccCCCCeEEEEEEecCceeeeEEecc----chhhhccCccccEEEccCCCCCCCCCCCCCceeEeeeecccccH
Q 007635 102 QG-TNCPIPSQWNWTYQFQVKDQIGSFFYFPS----LNLQRVSGGFGPVIINNRKVIPIPFDQPEGDIIFLIGDWYTRNH 176 (595)
Q Consensus 102 ~~-tq~~I~PG~~~tY~f~~~~~~Gt~wYH~H----~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~ 176 (595)
+. +| |+||++++|+|++ +++|||||||| +..|+.+||+|+|||++++..+ ..|+|++|+++||+++..
T Consensus 97 ~~~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~~----~~d~e~~l~l~d~~~~~~ 169 (311)
T TIGR02376 97 AALTQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLP----EYDKEYYIGESDLYTPKD 169 (311)
T ss_pred Cccee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCCc----CcceeEEEeeeeEecccc
Confidence 76 66 9999999999999 58999999999 4679999999999999865322 458999999999999754
Q ss_pred HHHHHHHh-c-C-CCCCCCceEEEccCCCCCCCCccCCCCCcceEEEecCCCEEEEEEEEcCCCceEEEEEeCccceeee
Q 007635 177 TALRTALD-S-G-KDLDMPDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVE 253 (595)
Q Consensus 177 ~~~~~~~~-~-~-~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi~ 253 (595)
........ . . .....++.++|||+.... .+.+++++|+++||||+|++..+.+.|+++||.+++|+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~-----------~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~ 238 (311)
T TIGR02376 170 EGEGGAYEDDVAAMRTLTPTHVVFNGAVGAL-----------TGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVW 238 (311)
T ss_pred ccccccccchHHHHhcCCCCEEEECCccCCC-----------CCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEE
Confidence 32110000 0 0 012457899999996422 25679999999999999999988999999999999999
Q ss_pred ccCcccccee--ecEEEEcCCcEEEEEEEcCCCCCcceEEEEeeecccccccccceeEEEEEecCCC
Q 007635 254 TEGHYTSQQN--YTSFEIHVGQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSK 318 (595)
Q Consensus 254 ~DG~~~~p~~--~~~l~i~pG~R~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~ 318 (595)
.||.++.+.. ++++.|+||||+||+|++++ +| .|+++++...... +....++|.|++..
T Consensus 239 ~DG~~~~~~~~~~~~~~i~PG~R~dv~v~~~~-pG-~y~~~~~~~~~~~----~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 239 VTGKFANPPNRDVETWFIPGGSAAAALYTFEQ-PG-VYAYVDHNLIEAF----EKGAAAQVKVEGAW 299 (311)
T ss_pred ECCcccCCCCCCcceEEECCCceEEEEEEeCC-Ce-EEEEECcHHHHHH----hCCCEEEEEECCCC
Confidence 9999998644 89999999999999999996 68 9999987543221 13467899998753
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=2.5e-37 Score=271.44 Aligned_cols=115 Identities=34% Similarity=0.705 Sum_probs=108.5
Q ss_pred EEEEEEeCCCCeeEEEEEECCCCCCceEEecCCCEEEEEEEeCCCCCceeecCCCccCCCCCCCCCCC-CCCccCCCCeE
Q 007635 36 KVSYITASPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQG-TNCPIPSQWNW 114 (595)
Q Consensus 36 ~v~~~~~~~dG~~~~~~~~Ng~~PGP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~-tq~~I~PG~~~ 114 (595)
+|++.++.++|..+++|+|||++|||+|++++||+|+|+|+|+|+++++|||||+++...+|+||+++ +||+|.||++|
T Consensus 1 ~v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~ 80 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESF 80 (117)
T ss_dssp -EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEE
T ss_pred CeeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecce
Confidence 47889999998889999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred EEEEEecCceeeeEEeccchhhhccCccccEEEccC
Q 007635 115 TYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNR 150 (595)
Q Consensus 115 tY~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~ 150 (595)
+|+|++++++||||||||...|..+||+|+|||+++
T Consensus 81 ~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 81 TYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp EEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 999999766999999999988888999999999985
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.96 E-value=2.4e-29 Score=229.20 Aligned_cols=109 Identities=29% Similarity=0.436 Sum_probs=99.0
Q ss_pred CCCCceeeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEE
Q 007635 427 PPRTDRSLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVS 506 (595)
Q Consensus 427 ~~~~~~~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~ 506 (595)
..+.++..+.++.|++|||+|+|.+...|||||||++|+|++++.+.++......+++.+|.+|||+.|+++++++|||+
T Consensus 28 ~~~~~~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~ 107 (138)
T PF07731_consen 28 PFFGNTPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFR 107 (138)
T ss_dssp TSSSTTSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEE
T ss_pred ccCCCcceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEE
Confidence 34457788999999999999999999999999999999999999887765556678899999999999999999999999
Q ss_pred eCCceeeeeeeccccceeccceeEEEEeC
Q 007635 507 LDNVGVWNLRVENLDRWYLGQETYMKIVN 535 (595)
Q Consensus 507 adNpG~W~~HCHil~h~~~Gm~~~~~V~~ 535 (595)
+||||.|+||||+++|++.||+..+.|.+
T Consensus 108 ~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 108 ADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp ETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred eecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 99999999999999999999999998863
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.96 E-value=2.9e-28 Score=227.19 Aligned_cols=153 Identities=32% Similarity=0.540 Sum_probs=124.3
Q ss_pred CceeEeeeecccccHHHHHH-HHhcC----CCCCCCceEEEccCCCCCCCCccCCCCCcceEEEecCCCEEEEEEEEcCC
Q 007635 162 GDIIFLIGDWYTRNHTALRT-ALDSG----KDLDMPDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGT 236 (595)
Q Consensus 162 ~e~~l~l~d~~~~~~~~~~~-~~~~~----~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~ 236 (595)
+|++|+++||||+....+.. .+..+ ..++++++++|||++.++|.+... +.+..+.+++++|++|||||||+|+
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~-~~~~~~~~~v~~g~~~rlRliNa~~ 79 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGRFDCSSADY-TGGEPPVIKVKPGERYRLRLINAGA 79 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTCBTTCTTGS-TTSTSGEEEEETTTEEEEEEEEESS
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccccccccccc-cccccceEEEcCCcEEEEEEEeccC
Confidence 48899999999987665533 33222 236789999999999988865532 3345799999999999999999999
Q ss_pred CceEEEEEeCccceeeeccCccccceeecEEEEcCCcEEEEEEEcCCCCCcceEEEEeeecccccccccceeEEEEEecC
Q 007635 237 STSLNFRIQNHNLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSN 316 (595)
Q Consensus 237 ~~~~~~~i~gh~~~vi~~DG~~~~p~~~~~l~i~pG~R~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~ 316 (595)
.+.+.|+|+||+|+|||+||.+++|..++++.|++||||||+|++++++| +|||++................|||+|++
T Consensus 80 ~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g-~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~ 158 (159)
T PF00394_consen 80 STSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPG-NYWIRASYQHDSINDPQNGNALAILRYDG 158 (159)
T ss_dssp S-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSS-EEEEEEEESSSSSHSHGGGTTEEEEEETT
T ss_pred CeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCC-eEEEEEecccCCCccCCCcEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999998667 99999973222122224578899999986
No 21
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.79 E-value=3.6e-19 Score=162.21 Aligned_cols=104 Identities=11% Similarity=0.161 Sum_probs=82.5
Q ss_pred CCCCeeEEEEEECCCCCCceEEecCCCEEEEEEEeCCC---CCceeecCCCccCCCCCCCCCCC-CCCccCCC---C-e-
Q 007635 43 SPLGVPQQVIAINGKFPGAVLNATTNNNIVINVQNDLD---ESLLMTWPGIQMRRNSWQDGVQG-TNCPIPSQ---W-N- 113 (595)
Q Consensus 43 ~~dG~~~~~~~~Ng~~PGP~i~v~~Gd~v~v~v~N~l~---~~~siH~HG~~~~~~~~~DGv~~-tq~~I~PG---~-~- 113 (595)
...+....-+.++| .+||+|++++||+|+|+|+|.++ -...||+||...+..+.|||++. +||+|.|+ + .
T Consensus 35 ~~~~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~ 113 (148)
T TIGR03095 35 PMPGPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFG 113 (148)
T ss_pred cCCCCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccc
Confidence 34566677788898 67999999999999999999965 34566666665544556999998 99998884 2 1
Q ss_pred -EEEEEEecCceeeeEEeccchhhhccCccccEEEc
Q 007635 114 -WTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIIN 148 (595)
Q Consensus 114 -~tY~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 148 (595)
.++.|+++ ++||||||||...|+.+||+|+|||+
T Consensus 114 ~~~~tf~f~-~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 114 YTDFTYHFS-TAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred eeEEEEECC-CCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 24455553 79999999999999999999999996
No 22
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.63 E-value=8.3e-16 Score=169.65 Aligned_cols=100 Identities=15% Similarity=0.206 Sum_probs=86.3
Q ss_pred eeEEEEEECCCCCCc--eEEecCCCEEEEEEEeCCCCCceeecCCCccCCCCCCCCCC---CCCCccCCCCeEEEEEEec
Q 007635 47 VPQQVIAINGKFPGA--VLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQ---GTNCPIPSQWNWTYQFQVK 121 (595)
Q Consensus 47 ~~~~~~~~Ng~~PGP--~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~---~tq~~I~PG~~~tY~f~~~ 121 (595)
..+.+|+|||+.+++ .|++++||+|+|++.|.+..++.|||||+..... ..||.. .....|+||++++|+|.+
T Consensus 483 m~~~~wtiNG~~~~~~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~-~~~G~~~~~~dTv~V~Pg~t~~~~f~a- 560 (587)
T TIGR01480 483 MERFAWSFDGEAFGLKTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELE-DGQGEFQVRKHTVDVPPGGKRSFRVTA- 560 (587)
T ss_pred CceeEEEECCccCCCCCceEecCCCEEEEEEECCCCCCcceeEcCceeeee-cCCCcccccCCceeeCCCCEEEEEEEC-
Confidence 457889999998874 7999999999999999999999999999976432 235642 223789999999999999
Q ss_pred CceeeeEEeccchhhhccCccccEEEc
Q 007635 122 DQIGSFFYFPSLNLQRVSGGFGPVIIN 148 (595)
Q Consensus 122 ~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 148 (595)
+++|+||||||...|...||++.+.|.
T Consensus 561 d~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 561 DALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred CCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 689999999999999999999999874
No 23
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.51 E-value=1.2e-12 Score=134.84 Aligned_cols=244 Identities=14% Similarity=0.062 Sum_probs=151.6
Q ss_pred CceEEEccCCCCCCCCccCCCCCcceEEEecCCCEEEEEEEEcCC-CceEEEEEeCccceeeeccCccccceeecEEEEc
Q 007635 192 PDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGT-STSLNFRIQNHNLLLVETEGHYTSQQNYTSFEIH 270 (595)
Q Consensus 192 ~d~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~-~~~~~~~i~gh~~~vi~~DG~~~~p~~~~~l~i~ 270 (595)
.+.+++||+.. .|.+++++|+++++++.|... ...+.+++|++. +.||... ...|.
T Consensus 47 ~~~~~~nG~~p-------------GP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~ 103 (311)
T TIGR02376 47 YQAMTFDGSVP-------------GPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVN 103 (311)
T ss_pred EEEEEECCccc-------------CceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeEC
Confidence 35799999874 489999999999999999864 246888998874 4576431 23489
Q ss_pred CCcEEEEEEEcCCCCCcceEEEEeeec--ccccccccceeEEEEEecCCCCCCCCCCCCCCCCCCccccccCcccccccc
Q 007635 271 VGQSYSFLVTMDQNASSDYYIVASARF--VNESFWQRVTGVAILHYSNSKGAASGPLPEAPSDIYNQWAAMTQPRSIRQN 348 (595)
Q Consensus 271 pG~R~dvlv~~~~~~g~~y~i~~~~~~--~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~ 348 (595)
||+++.+.++++ .+| .||.+++... ..+. .....+.|...... +.|. .+.+..+. .. +|.
T Consensus 104 PG~t~ty~F~~~-~~G-ty~YH~H~~~~~~~q~---~~Gl~G~liV~~~~-----~~~~-----~d~e~~l~-l~--d~~ 165 (311)
T TIGR02376 104 PGETATLRFKAT-RPG-AFVYHCAPPGMVPWHV---VSGMNGAIMVLPRE-----GLPE-----YDKEYYIG-ES--DLY 165 (311)
T ss_pred CCCeEEEEEEcC-CCE-EEEEEcCCCCchhHHh---hcCcceEEEeeccC-----CCcC-----cceeEEEe-ee--eEe
Confidence 999999999987 478 9999988532 1110 11223444443321 1111 01111100 00 111
Q ss_pred CCCCCCCCCCCCCCCcCccceeeEEEEecCCCcccCCeEEEEecCeeccCCCChhhhhhcccCCCcccCCCCCCCCCCCC
Q 007635 349 TSASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPETPIRLADKYNVKGAYKLDFPNKPLTRPP 428 (595)
Q Consensus 349 l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~~~~~p~~~~~ 428 (595)
+...... .+. ...+ ..... ... ...+.|||+.+.. .
T Consensus 166 ~~~~~~~---~~~-----~~~~----~~~~~--~~~-~~~~~iNG~~~~~--~--------------------------- 201 (311)
T TIGR02376 166 TPKDEGE---GGA-----YEDD----VAAMR--TLT-PTHVVFNGAVGAL--T--------------------------- 201 (311)
T ss_pred ccccccc---ccc-----ccch----HHHHh--cCC-CCEEEECCccCCC--C---------------------------
Confidence 1100000 000 0000 00000 001 1246678875310 0
Q ss_pred CCceeeeeecCCcEEEEEEecCCC-CceeeeecCceEEEEeecccccCCCCCCCCCcCCCC-cccEEEECCCcEEEEEEE
Q 007635 429 RTDRSLINATYKGFIEIILQNNDT-KMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAI-SKCTTEVYPGAWTAILVS 506 (595)
Q Consensus 429 ~~~~~v~~~~~g~~ve~vl~N~~~-~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~-~RDTv~v~p~g~~~Irf~ 506 (595)
..+.++.|+++.|.|.|.+. ..+.||++|++|.++..+++...+ +. ..|++.+.||.-..|.++
T Consensus 202 ----~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~~~----------~~~~~~~~~i~PG~R~dv~v~ 267 (311)
T TIGR02376 202 ----GDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFANP----------PNRDVETWFIPGGSAAAALYT 267 (311)
T ss_pred ----CCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcccCC----------CCCCcceEEECCCceEEEEEE
Confidence 01246789999999999975 569999999999999995332211 22 369999999999999999
Q ss_pred eCCceeeeeeeccccce-eccceeEEEEe
Q 007635 507 LDNVGVWNLRVENLDRW-YLGQETYMKIV 534 (595)
Q Consensus 507 adNpG~W~~HCHil~h~-~~Gm~~~~~V~ 534 (595)
++.||.|.+|||...+. ..|++..+.|.
T Consensus 268 ~~~pG~y~~~~~~~~~~~~~g~~~~i~~~ 296 (311)
T TIGR02376 268 FEQPGVYAYVDHNLIEAFEKGAAAQVKVE 296 (311)
T ss_pred eCCCeEEEEECcHHHHHHhCCCEEEEEEC
Confidence 99999999999987776 66888777765
No 24
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.48 E-value=4e-13 Score=118.39 Aligned_cols=105 Identities=19% Similarity=0.115 Sum_probs=82.2
Q ss_pred HHHHHHhhcccccCceEEEEEEEE--EEEe---CCCCeeEEEE-EECCCCCCceEEecCCCEEEEEEEeCCCCCc--eee
Q 007635 15 IHIALFSSLCFAEDDTIFYDFKVS--YITA---SPLGVPQQVI-AINGKFPGAVLNATTNNNIVINVQNDLDESL--LMT 86 (595)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~v~--~~~~---~~dG~~~~~~-~~Ng~~PGP~i~v~~Gd~v~v~v~N~l~~~~--siH 86 (595)
+..+.++.+..+.++.|+|+++|. +..+ +..|+....| ++|+++..+.|+|++||+|+++|.|..+.++ .++
T Consensus 9 ~~~~~~~~~~~~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i~ 88 (135)
T TIGR03096 9 GFALGLLLMGTAQAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISEGFSID 88 (135)
T ss_pred HHHHHHhhccchhhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCCccceEEC
Confidence 333334445566666789999998 6655 4578887776 9999999999999999999999999876544 455
Q ss_pred cCCCccCCCCCCCCCCCCCCccCCCCeEEEEEEecCceeeeEEeccch
Q 007635 87 WPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSLN 134 (595)
Q Consensus 87 ~HG~~~~~~~~~DGv~~tq~~I~PG~~~tY~f~~~~~~Gt~wYH~H~~ 134 (595)
+||+ +..|+||++.+|+|++ +++|+|||||...
T Consensus 89 ~~gi--------------s~~I~pGet~TitF~a-dKpG~Y~y~C~~H 121 (135)
T TIGR03096 89 AYGI--------------SEVIKAGETKTISFKA-DKAGAFTIWCQLH 121 (135)
T ss_pred CCCc--------------ceEECCCCeEEEEEEC-CCCEEEEEeCCCC
Confidence 5443 2458999999999998 6999999999743
No 25
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=98.98 E-value=5e-08 Score=108.40 Aligned_cols=239 Identities=17% Similarity=0.135 Sum_probs=142.5
Q ss_pred ceEEEccCCCCCCCCccCCCCCcceEEEecCCCEEEEEEEEcCCCceEEEEEeCccceee-eccCccccceeecEEEEcC
Q 007635 193 DGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLV-ETEGHYTSQQNYTSFEIHV 271 (595)
Q Consensus 193 d~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi-~~DG~~~~p~~~~~l~i~p 271 (595)
..+++||+.. .|.|+++.|+++++++.|--.. ...+|.||....-- ..||..- +..-.|.|
T Consensus 23 ~~~~~NG~~P-------------GP~i~~~~GD~v~v~v~N~l~~-~tsiHwHGl~q~~~~~~DGv~~----vTq~pI~P 84 (539)
T TIGR03389 23 SILTVNGKFP-------------GPTLYAREGDTVIVNVTNNVQY-NVTIHWHGVRQLRNGWADGPAY----ITQCPIQP 84 (539)
T ss_pred EEEEECCccc-------------CCEEEEEcCCEEEEEEEeCCCC-CeeEecCCCCCCCCCCCCCCcc----cccCCcCC
Confidence 4799999875 5999999999999999998775 45667666543211 2588642 33346899
Q ss_pred CcEEEEEEEcCCCCCcceEEEEeeecccccccccceeEEEEEecCCCCCCCCCCCCCCCCCCccccccCccccccccCCC
Q 007635 272 GQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGAASGPLPEAPSDIYNQWAAMTQPRSIRQNTSA 351 (595)
Q Consensus 272 G~R~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~l~~ 351 (595)
|+++...+++.+.+| .||.+.+...... . ..|-|...... +.+.|..... .+....+.+ |....
T Consensus 85 G~s~~Y~f~~~~~~G-T~WYHsH~~~~~~----G--l~G~lIV~~~~---~~~~~~~~~d-~e~~l~l~D-----w~~~~ 148 (539)
T TIGR03389 85 GQSYVYNFTITGQRG-TLWWHAHISWLRA----T--VYGAIVILPKP---GVPYPFPKPD-REVPIILGE-----WWNAD 148 (539)
T ss_pred CCeEEEEEEecCCCe-eEEEecCchhhhc----c--ceEEEEEcCCC---CCCCCCCCCC-ceEEEEecc-----cccCC
Confidence 999999999865678 9999988642111 1 22322222211 1111110000 010000000 10000
Q ss_pred CCCCCCCCCCCCcCccceeeEEEEecCCCcccCCeEEEEecCeeccCCCChhhhhhcccCCCcccCCCCCCCCCCCCCCc
Q 007635 352 SGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPETPIRLADKYNVKGAYKLDFPNKPLTRPPRTD 431 (595)
Q Consensus 352 ~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~~~~~p~~~~~~~~ 431 (595)
.. ...... +.... ...-...+.|||+.... +. ..+ ..
T Consensus 149 ~~-------------~~~~~~--~~~~~--~~~~~d~~liNG~~~~~----------------~~----~~~------~~ 185 (539)
T TIGR03389 149 VE-------------AVINQA--NQTGG--APNVSDAYTINGHPGPL----------------YN----CSS------KD 185 (539)
T ss_pred HH-------------HHHHHH--HhcCC--CCCccceEEECCCcCCC----------------CC----CCC------CC
Confidence 00 000000 00000 00001136678764210 00 000 02
Q ss_pred eeeeeecCCcEEEEEEecCCC-CceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCC-
Q 007635 432 RSLINATYKGFIEIILQNNDT-KMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDN- 509 (595)
Q Consensus 432 ~~v~~~~~g~~ve~vl~N~~~-~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adN- 509 (595)
..+++++.|+++.|.|.|.+. ..+.|||+||.|.||+.+ |.+ ..|...|++.|.+|+-..|.+++++
T Consensus 186 ~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~D-G~~----------~~P~~~~~l~i~~GqRydVlv~a~~~ 254 (539)
T TIGR03389 186 TFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVD-ATY----------TKPFKTKTIVIGPGQTTNVLLTADQS 254 (539)
T ss_pred ceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeC-Ccc----------cCceEeCeEEecCCCEEEEEEECCCC
Confidence 246889999999999999975 458999999999999997 322 2478889999999999999999986
Q ss_pred ceeeeeeecc
Q 007635 510 VGVWNLRVEN 519 (595)
Q Consensus 510 pG~W~~HCHi 519 (595)
+|.|.++-+.
T Consensus 255 ~g~y~i~~~~ 264 (539)
T TIGR03389 255 PGRYFMAARP 264 (539)
T ss_pred CceEEEEEec
Confidence 8998887654
No 26
>PLN02835 oxidoreductase
Probab=98.97 E-value=3.9e-08 Score=108.57 Aligned_cols=220 Identities=15% Similarity=0.129 Sum_probs=134.4
Q ss_pred ceEEEccCCCCCCCCccCCCCCcceEEEecCCCEEEEEEEEcCCCceEEEEEeCcccee-eeccCccccceeecEEEEcC
Q 007635 193 DGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLL-VETEGHYTSQQNYTSFEIHV 271 (595)
Q Consensus 193 d~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~v-i~~DG~~~~p~~~~~l~i~p 271 (595)
..++|||+.. .|.|++++|+++++++.|--.. ...+|.||..+.- -..||.+. ..-.|.|
T Consensus 49 ~~~~~NG~~P-------------GP~I~~~~GD~v~v~v~N~L~~-~ttiHWHGl~~~~~~~~DGv~~-----tQ~pI~P 109 (539)
T PLN02835 49 QVILINGQFP-------------GPRLDVVTNDNIILNLINKLDQ-PFLLTWNGIKQRKNSWQDGVLG-----TNCPIPP 109 (539)
T ss_pred EEEEECCcCC-------------CCCEEEECCCEEEEEEEeCCCC-CCcEEeCCcccCCCCCCCCCcc-----CcCCCCC
Confidence 4799999975 5999999999999999998764 5567777765442 34699643 1347999
Q ss_pred CcEEEEEEEcCCCCCcceEEEEeeecccccccccceeEEEEEecCCCCCCCCCCCCCCCCCCcc-----ccccCcccccc
Q 007635 272 GQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGAASGPLPEAPSDIYNQ-----WAAMTQPRSIR 346 (595)
Q Consensus 272 G~R~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~~p~~~~~-----~~~~~~~~~~~ 346 (595)
|+.+...+++.+.+| +||.+++... +. ...+.+.-|+ ..... .+.|..... .+. +|.......+.
T Consensus 110 G~sf~Y~F~~~~q~G-T~WYHsH~~~--q~-~~Gl~G~lIV-~~~~~----~~~p~~~~d-~e~~l~l~Dw~~~~~~~~~ 179 (539)
T PLN02835 110 NSNYTYKFQTKDQIG-TFTYFPSTLF--HK-AAGGFGAINV-YERPR----IPIPFPLPD-GDFTLLVGDWYKTSHKTLQ 179 (539)
T ss_pred CCcEEEEEEECCCCE-eEEEEeCccc--hh-cCcccceeEE-eCCCC----CCcCCCCCC-ceEEEEeeccccCCHHHHH
Confidence 999999998754578 9999987532 10 0112222233 22111 111100000 000 11100000000
Q ss_pred ccCCCCCCCCCCCCCCCcCccceeeEEEEecCCCcccCCeEEEEecCeeccCCCChhhhhhcccCCCcccCCCCCCCCCC
Q 007635 347 QNTSASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPETPIRLADKYNVKGAYKLDFPNKPLTR 426 (595)
Q Consensus 347 ~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~~~~~p~~~ 426 (595)
..+..+. ...-.....|||+.
T Consensus 180 ~~~~~g~----------------------------~~~~~d~~liNG~~------------------------------- 200 (539)
T PLN02835 180 QRLDSGK----------------------------VLPFPDGVLINGQT------------------------------- 200 (539)
T ss_pred HHhhcCC----------------------------CCCCCceEEEcccc-------------------------------
Confidence 0000000 00000123345432
Q ss_pred CCCCceeeeeecCCcEEEEEEecCCCC-ceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEE
Q 007635 427 PPRTDRSLINATYKGFIEIILQNNDTK-MQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILV 505 (595)
Q Consensus 427 ~~~~~~~v~~~~~g~~ve~vl~N~~~~-~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf 505 (595)
...+.++.|+++.|.|.|.+.. ..-||+.||+|.|++.++. + ..|...|++.+.+|+...+.+
T Consensus 201 -----~~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~-~----------v~p~~~~~l~i~~GqRydvlv 264 (539)
T PLN02835 201 -----QSTFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGS-H----------TIQNIYDSLDVHVGQSVAVLV 264 (539)
T ss_pred -----CceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCc-c----------CCCceeeEEEECcCceEEEEE
Confidence 1235688999999999999864 6999999999999999743 2 236678999999999999999
Q ss_pred EeCC-ceeeeee
Q 007635 506 SLDN-VGVWNLR 516 (595)
Q Consensus 506 ~adN-pG~W~~H 516 (595)
+++. +|.|-++
T Consensus 265 ~~~~~~g~y~i~ 276 (539)
T PLN02835 265 TLNQSPKDYYIV 276 (539)
T ss_pred EcCCCCCcEEEE
Confidence 9874 6877666
No 27
>PRK10965 multicopper oxidase; Provisional
Probab=98.96 E-value=3.1e-08 Score=109.03 Aligned_cols=231 Identities=14% Similarity=0.119 Sum_probs=137.1
Q ss_pred EEEEECCCCCCceEEecCCCEEEEEEEeCCC-CCceeec-CCCccCCCCCCCCCC----C--CCCccCCCCeEEEEEEec
Q 007635 50 QVIAINGKFPGAVLNATTNNNIVINVQNDLD-ESLLMTW-PGIQMRRNSWQDGVQ----G--TNCPIPSQWNWTYQFQVK 121 (595)
Q Consensus 50 ~~~~~Ng~~PGP~i~v~~Gd~v~v~v~N~l~-~~~siH~-HG~~~~~~~~~DGv~----~--tq~~I~PG~~~tY~f~~~ 121 (595)
..++|||+. .|.+.++ |.++++|+.|... ....+.+ .|.... --..||.+ . ....|.|||+++.-++++
T Consensus 213 d~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~-vIa~DG~~l~~P~~v~~l~lapGeR~dvlv~~~ 289 (523)
T PRK10965 213 DTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLY-VIASDGGLLAEPVKVSELPILMGERFEVLVDTS 289 (523)
T ss_pred CeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEE-EEEeCCCcccCccEeCeEEECccceEEEEEEcC
Confidence 568999995 7898885 5699999999964 4445655 343221 13478854 2 345699999999999885
Q ss_pred CceeeeEEeccchhhhccC------ccccEEEccCC--C-CCCC-----CCC-C------CCceeEeeeecccc------
Q 007635 122 DQIGSFFYFPSLNLQRVSG------GFGPVIINNRK--V-IPIP-----FDQ-P------EGDIIFLIGDWYTR------ 174 (595)
Q Consensus 122 ~~~Gt~wYH~H~~~q~~~G------l~G~liV~~~~--~-~~~~-----~~~-~------d~e~~l~l~d~~~~------ 174 (595)
+.|.++...-...+...+ -+-.+.|.... . ...| ... . .+.+.+.+..+...
T Consensus 290 -~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m~~~ 368 (523)
T PRK10965 290 -DGKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLDMMGMQML 368 (523)
T ss_pred -CCceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeeccccchhhhhhc
Confidence 467777655321111100 01112233111 0 0010 000 0 01222322211000
Q ss_pred ----cHHHHHH--------H--------HhcCC--CCC---CCceEEEccCCCCCCCCccCCCCCcceEEEecCCCEEEE
Q 007635 175 ----NHTALRT--------A--------LDSGK--DLD---MPDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRV 229 (595)
Q Consensus 175 ----~~~~~~~--------~--------~~~~~--~~~---~~d~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rl 229 (595)
....... . +..+. ..+ ....++|||+.+. .+.+.++++.|++.+|
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~----------~~~~~~~~~~G~~e~w 438 (523)
T PRK10965 369 MEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFD----------MNKPMFAAKKGQYERW 438 (523)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccCCCeECC----------CCCcceecCCCCEEEE
Confidence 0000000 0 00000 000 0112489999862 1246689999999999
Q ss_pred EEEEcCCCceEEEEEeCccceeeeccCccccc---eeecEEEEcCCcEEEEEEEcCCC---CCcceEEEEeee
Q 007635 230 RVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQ---QNYTSFEIHVGQSYSFLVTMDQN---ASSDYYIVASAR 296 (595)
Q Consensus 230 RliN~~~~~~~~~~i~gh~~~vi~~DG~~~~p---~~~~~l~i~pG~R~dvlv~~~~~---~g~~y~i~~~~~ 296 (595)
+|+|.+....|.|||||+.|+|++.||....+ ...|++.+.+ ++..+++++++. +| .|-++++..
T Consensus 439 ~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g-~~~~HCHiL 509 (523)
T PRK10965 439 VISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEH-AYMAHCHLL 509 (523)
T ss_pred EEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecCCCCCCC-CEEEEeCch
Confidence 99999875579999999999999999987653 4579999976 889999999853 35 777777754
No 28
>PLN02354 copper ion binding / oxidoreductase
Probab=98.90 E-value=9.9e-08 Score=105.61 Aligned_cols=229 Identities=15% Similarity=0.112 Sum_probs=139.4
Q ss_pred ceEEEccCCCCCCCCccCCCCCcceEEEecCCCEEEEEEEEcCCCceEEEEEeCcccee-eeccCccccceeecEEEEcC
Q 007635 193 DGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLL-VETEGHYTSQQNYTSFEIHV 271 (595)
Q Consensus 193 d~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~v-i~~DG~~~~p~~~~~l~i~p 271 (595)
..++|||+.. .|.|++++|+++++++.|.... ...+|.||..+.- -..||.+. ..-.|.|
T Consensus 47 ~~~~iNGq~P-------------GP~I~~~~GD~v~V~v~N~l~~-~ttiHWHGi~q~~~~~~DGv~~-----TQcpI~P 107 (552)
T PLN02354 47 QVILINGQFP-------------GPNINSTSNNNIVINVFNNLDE-PFLLTWSGIQQRKNSWQDGVPG-----TNCPIPP 107 (552)
T ss_pred EEEEECCCCc-------------CCcEEEeCCCEEEEEEEECCCC-CcccccccccCCCCcccCCCcC-----CcCCCCC
Confidence 4799999875 5999999999999999999754 4566776654432 24799542 3347999
Q ss_pred CcEEEEEEEcCCCCCcceEEEEeeecccccccccceeEEEEEecCCCCCCCCCCCCCCCCCCcc-----ccccCcccccc
Q 007635 272 GQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGAASGPLPEAPSDIYNQ-----WAAMTQPRSIR 346 (595)
Q Consensus 272 G~R~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~~p~~~~~-----~~~~~~~~~~~ 346 (595)
|+.+...+++++.+| +||.+++...-.. ..+.+ +++.. +.. ..+.|...+. .+. +|.......+.
T Consensus 108 G~sf~Y~F~~~~q~G-T~WYHsH~~~Q~~---~Gl~G-~lII~-~~~---~~~~p~~~~d-~e~~l~l~Dw~~~~~~~~~ 177 (552)
T PLN02354 108 GTNFTYHFQPKDQIG-SYFYYPSTGMHRA---AGGFG-GLRVN-SRL---LIPVPYADPE-DDYTVLIGDWYTKSHTALK 177 (552)
T ss_pred CCcEEEEEEeCCCCc-ceEEecCccceec---CCccc-eEEEc-CCc---CCCCCCCCcC-ceEEEEeeeeccCCHHHHH
Confidence 999999999864578 9999987531110 11222 23322 211 0111110000 010 11110000000
Q ss_pred ccCCCCCCCCCCCCCCCcCccceeeEEEEecCCCcccCCeEEEEecCeeccCCCChhhhhhcccCCCcccCCCCCCCCCC
Q 007635 347 QNTSASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPETPIRLADKYNVKGAYKLDFPNKPLTR 426 (595)
Q Consensus 347 ~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~~~~~p~~~ 426 (595)
..+..+ . .........|||+.... +
T Consensus 178 ~~~~~g------------------------~----~~~~~d~~liNG~~~~~----------------~----------- 202 (552)
T PLN02354 178 KFLDSG------------------------R----TLGRPDGVLINGKSGKG----------------D----------- 202 (552)
T ss_pred HHHhcC------------------------C----CCCCCCeEEEeCCcCCC----------------C-----------
Confidence 000000 0 00001124566653110 0
Q ss_pred CCCCceeeeeecCCcEEEEEEecCCCC-ceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEE
Q 007635 427 PPRTDRSLINATYKGFIEIILQNNDTK-MQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILV 505 (595)
Q Consensus 427 ~~~~~~~v~~~~~g~~ve~vl~N~~~~-~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf 505 (595)
......++++.|+++.|.|.|.+.. ..-||+.||.|.||+.++.. ..|...|++.|.+|....+.+
T Consensus 203 --~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~-----------v~p~~~~~l~i~~GqRydVlv 269 (552)
T PLN02354 203 --GKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSH-----------VLQNDYDSLDVHVGQCFSVLV 269 (552)
T ss_pred --CCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCcc-----------cCCcceeEEEEccCceEEEEE
Confidence 0023457899999999999999754 58999999999999997432 236667999999999999999
Q ss_pred EeCC-ceeeeeeec
Q 007635 506 SLDN-VGVWNLRVE 518 (595)
Q Consensus 506 ~adN-pG~W~~HCH 518 (595)
+++. +|.|-++-.
T Consensus 270 ~a~~~~g~Y~i~a~ 283 (552)
T PLN02354 270 TANQAPKDYYMVAS 283 (552)
T ss_pred ECCCCCCcEEEEEe
Confidence 9985 788777655
No 29
>PLN02792 oxidoreductase
Probab=98.88 E-value=1.2e-07 Score=104.49 Aligned_cols=224 Identities=15% Similarity=0.147 Sum_probs=135.0
Q ss_pred ceEEEccCCCCCCCCccCCCCCcceEEEecCCCEEEEEEEEcCCCceEEEEEeCccceee-eccCccccceeecEEEEcC
Q 007635 193 DGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLV-ETEGHYTSQQNYTSFEIHV 271 (595)
Q Consensus 193 d~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi-~~DG~~~~p~~~~~l~i~p 271 (595)
..++|||+.. .|.|++++|+++++++.|-... ...+|.||..+.-- ..||... .+-.|.|
T Consensus 36 ~~~~vNGq~P-------------GP~I~~~~GD~v~V~v~N~L~~-~ttiHWHGl~q~~~~~~DGv~~-----tqcPI~P 96 (536)
T PLN02792 36 RGILINGQFP-------------GPEIRSLTNDNLVINVHNDLDE-PFLLSWNGVHMRKNSYQDGVYG-----TTCPIPP 96 (536)
T ss_pred EEEEECCCCC-------------CCcEEEECCCEEEEEEEeCCCC-CcCEeCCCcccCCCCccCCCCC-----CcCccCC
Confidence 4799999975 5999999999999999998764 45555555443322 2799643 1257899
Q ss_pred CcEEEEEEEcCCCCCcceEEEEeeecccccccccceeEEEEEecCCCCCCCCCCCCCCCCCCcc-----ccccCcccccc
Q 007635 272 GQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGAASGPLPEAPSDIYNQ-----WAAMTQPRSIR 346 (595)
Q Consensus 272 G~R~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~~p~~~~~-----~~~~~~~~~~~ 346 (595)
|+.+...+++++.+| .||.+++...-.. ....+ +++.+..... +.+.+. +. .+. +|.......+.
T Consensus 97 G~sftY~F~~~~q~G-T~WYHsH~~~q~~---~Gl~G-~liI~~~~~~--~~p~~~--~d-~e~~i~l~Dw~~~~~~~~~ 166 (536)
T PLN02792 97 GKNYTYDFQVKDQVG-SYFYFPSLAVQKA---AGGYG-SLRIYSLPRI--PVPFPE--PA-GDFTFLIGDWYRRNHTTLK 166 (536)
T ss_pred CCcEEEEEEeCCCcc-ceEEecCcchhhh---ccccc-ceEEeCCccc--CcCCCc--cc-ceeEEEecccccCCHHHHH
Confidence 999999999865578 9999998642110 11222 2323322111 011111 00 010 11100000000
Q ss_pred ccCCCCCCCCCCCCCCCcCccceeeEEEEecCCCcccCCeEEEEecCeeccCCCChhhhhhcccCCCcccCCCCCCCCCC
Q 007635 347 QNTSASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPETPIRLADKYNVKGAYKLDFPNKPLTR 426 (595)
Q Consensus 347 ~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~~~~~p~~~ 426 (595)
..+..+ .. .........|||+...
T Consensus 167 ~~~~~g------------------------~~---~~~~~d~~liNG~~~~----------------------------- 190 (536)
T PLN02792 167 KILDGG------------------------RK---LPLMPDGVMINGQGVS----------------------------- 190 (536)
T ss_pred HHhhcc------------------------Cc---CCCCCCEEEEeccCCC-----------------------------
Confidence 000000 00 0000012445654210
Q ss_pred CCCCceeeeeecCCcEEEEEEecCCCC-ceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEE
Q 007635 427 PPRTDRSLINATYKGFIEIILQNNDTK-MQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILV 505 (595)
Q Consensus 427 ~~~~~~~v~~~~~g~~ve~vl~N~~~~-~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf 505 (595)
....++++.|+++.|.|.|.+.. ..-|++.||.|.||+.++.. ..|...|++.|.+|....+.+
T Consensus 191 ----~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~-----------v~p~~~~~l~i~~GqRydVlV 255 (536)
T PLN02792 191 ----YVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTH-----------TVQSMYTSLDIHVGQTYSVLV 255 (536)
T ss_pred ----CcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCcc-----------CCCcceeEEEEccCceEEEEE
Confidence 01347789999999999999765 58999999999999997432 236677999999999999999
Q ss_pred EeCC-ceeeeee
Q 007635 506 SLDN-VGVWNLR 516 (595)
Q Consensus 506 ~adN-pG~W~~H 516 (595)
+++. +|.|-+.
T Consensus 256 ~a~~~~g~Y~i~ 267 (536)
T PLN02792 256 TMDQPPQNYSIV 267 (536)
T ss_pred EcCCCCceEEEE
Confidence 9986 4776655
No 30
>PLN02991 oxidoreductase
Probab=98.87 E-value=1.2e-07 Score=104.50 Aligned_cols=218 Identities=17% Similarity=0.166 Sum_probs=133.6
Q ss_pred ceEEEccCCCCCCCCccCCCCCcceEEEecCCCEEEEEEEEcCCCceEEEEEeCccce-eeeccCccccceeecEEEEcC
Q 007635 193 DGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLL-LVETEGHYTSQQNYTSFEIHV 271 (595)
Q Consensus 193 d~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~-vi~~DG~~~~p~~~~~l~i~p 271 (595)
..++|||+.. .|.|+++.|+++++++.|.-.. ...+|.||.... --..||.+. ..-.|.|
T Consensus 48 ~~~~vNG~~P-------------GP~I~~~~GD~v~V~V~N~L~~-~ttiHWHGi~q~~~~~~DGv~~-----tQcpI~P 108 (543)
T PLN02991 48 QGILINGKFP-------------GPDIISVTNDNLIINVFNHLDE-PFLISWSGIRNWRNSYQDGVYG-----TTCPIPP 108 (543)
T ss_pred EEEEEcCCCC-------------CCcEEEECCCEEEEEecCCCCC-CccEEECCcccCCCccccCCCC-----CCCccCC
Confidence 4799999875 5999999999999999998754 556777776542 234799642 2457999
Q ss_pred CcEEEEEEEcCCCCCcceEEEEeeecccccccccceeEEEEEecCCCCCCCCCCCCCCCCCCc-----cccccCcccccc
Q 007635 272 GQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGAASGPLPEAPSDIYN-----QWAAMTQPRSIR 346 (595)
Q Consensus 272 G~R~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~~p~~~~-----~~~~~~~~~~~~ 346 (595)
|+++...+++++.+| +||.+++...... ..+.+ +++...... .+.|...+. .+ .+|.......+.
T Consensus 109 G~sftY~F~~~~q~G-T~WYHsH~~~q~~---~Gl~G-~lIV~~~~~----~~~p~~~~d-~d~~i~l~DW~~~~~~~~~ 178 (543)
T PLN02991 109 GKNYTYALQVKDQIG-SFYYFPSLGFHKA---AGGFG-AIRISSRPL----IPVPFPAPA-DDYTVLIGDWYKTNHKDLR 178 (543)
T ss_pred CCcEEEEEEeCCCCc-ceEEecCcchhhh---CCCee-eEEEeCCcc----cCccccccc-ceeEEEecceecCCHHHHH
Confidence 999999999865678 9999998642111 11222 233322111 111110000 00 011110000000
Q ss_pred ccCCCCCCCCCCCCCCCcCccceeeEEEEecCCCcccCCeEEEEecCeeccCCCChhhhhhcccCCCcccCCCCCCCCCC
Q 007635 347 QNTSASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPETPIRLADKYNVKGAYKLDFPNKPLTR 426 (595)
Q Consensus 347 ~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~~~~~p~~~ 426 (595)
..+..+ . ...-.....|||+..
T Consensus 179 ~~~~~~------------------------~----~~~~~d~~liNG~~~------------------------------ 200 (543)
T PLN02991 179 AQLDNG------------------------G----KLPLPDGILINGRGS------------------------------ 200 (543)
T ss_pred HHhhcC------------------------C----CCCCCCEEEEccCCC------------------------------
Confidence 000000 0 000001233454420
Q ss_pred CCCCceeeeeecCCcEEEEEEecCCCC-ceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEE
Q 007635 427 PPRTDRSLINATYKGFIEIILQNNDTK-MQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILV 505 (595)
Q Consensus 427 ~~~~~~~v~~~~~g~~ve~vl~N~~~~-~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf 505 (595)
...++++.|+++.|.|+|.+.. .+-|+|.||.|+||+.++. + ..|...|++.+.+|....+.+
T Consensus 201 -----~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~-~----------~~p~~~~~l~i~~GQRydvlv 264 (543)
T PLN02991 201 -----GATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGT-H----------TIQTPFSSLDVHVGQSYSVLI 264 (543)
T ss_pred -----CceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCc-c----------ccceeeeEEEEcCCcEEEEEE
Confidence 1246788999999999999865 4899999999999999633 2 237788999999999999999
Q ss_pred EeCCc-eee
Q 007635 506 SLDNV-GVW 513 (595)
Q Consensus 506 ~adNp-G~W 513 (595)
++|++ |.+
T Consensus 265 ~a~~~~~~y 273 (543)
T PLN02991 265 TADQPAKDY 273 (543)
T ss_pred ECCCCCCcE
Confidence 99874 543
No 31
>PLN02168 copper ion binding / pectinesterase
Probab=98.84 E-value=2.6e-07 Score=101.99 Aligned_cols=220 Identities=13% Similarity=0.140 Sum_probs=130.4
Q ss_pred ceEEEccCCCCCCCCccCCCCCcceEEEecCCCEEEEEEEEcCCCceEEEEEeCccceee-eccCccccceeecEEEEcC
Q 007635 193 DGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLV-ETEGHYTSQQNYTSFEIHV 271 (595)
Q Consensus 193 d~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi-~~DG~~~~p~~~~~l~i~p 271 (595)
..+++||+.. .|.|+++.|+++++++.|--.. ...+|.||..+.-- ..||.+- ..-.|.|
T Consensus 46 ~~~~vNG~~P-------------GP~I~~~~GD~v~V~v~N~L~~-~ttiHWHGl~~~~~~~~DGv~g-----tQcpI~P 106 (545)
T PLN02168 46 QVIVINDMFP-------------GPLLNATANDVINVNIFNNLTE-PFLMTWNGLQLRKNSWQDGVRG-----TNCPILP 106 (545)
T ss_pred EEEEECCcCC-------------CCcEEEECCCEEEEEEEeCCCC-CccEeeCCccCCCCCCcCCCCC-----CcCCCCC
Confidence 4789999975 5999999999999999998765 56677777544322 2599642 2247999
Q ss_pred CcEEEEEEEcCCCCCcceEEEEeeecccccccccceeEEEEEecCCCCCCCCCCCCCCCCCCccccccCccccccccCCC
Q 007635 272 GQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGAASGPLPEAPSDIYNQWAAMTQPRSIRQNTSA 351 (595)
Q Consensus 272 G~R~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~l~~ 351 (595)
|+++...+++++.+| .||.+.+... +. .....|-|...+.. ..+.|...+. .+....+. +|....
T Consensus 107 G~sftY~F~~~~q~G-T~WYHsH~~~--Q~---~~GL~G~lII~~~~---~~~~p~~~~d-~e~~l~l~-----Dw~~~~ 171 (545)
T PLN02168 107 GTNWTYRFQVKDQIG-SYFYFPSLLL--QK---AAGGYGAIRIYNPE---LVPVPFPKPD-EEYDILIG-----DWFYAD 171 (545)
T ss_pred CCcEEEEEEeCCCCc-eEEEecChhh--hh---hCcceeEEEEcCCc---ccCcCcCccc-ceeeEEEE-----ecCCCC
Confidence 999999999865578 9999987532 10 01122222222211 1111110000 01000000 010000
Q ss_pred CCCCCCCCCCCCcCccceeeEEEEecCCCcccCCeEEEEecCeeccCCCChhhhhhcccCCCcccCCCCCCCCCCCCCCc
Q 007635 352 SGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPETPIRLADKYNVKGAYKLDFPNKPLTRPPRTD 431 (595)
Q Consensus 352 ~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~~~~~p~~~~~~~~ 431 (595)
. . ..... +.... .........|||+.- .
T Consensus 172 ~------~--------~~~~~--~~~g~--~~~~~d~~liNG~~~----------------------------------~ 199 (545)
T PLN02168 172 H------T--------VMRAS--LDNGH--SLPNPDGILFNGRGP----------------------------------E 199 (545)
T ss_pred H------H--------HHHhh--hhcCC--CCCCCCEEEEeccCC----------------------------------C
Confidence 0 0 00000 00000 000001234555420 0
Q ss_pred eeeeeecCCcEEEEEEecCCCC-ceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCC
Q 007635 432 RSLINATYKGFIEIILQNNDTK-MQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDN 509 (595)
Q Consensus 432 ~~v~~~~~g~~ve~vl~N~~~~-~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adN 509 (595)
...++++.|+++.|.|.|.+.. .+.|++.||+|+|++.++. + ..|...|++.+.+|+...+.+++++
T Consensus 200 ~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~-~----------v~p~~~~~l~i~~GqRydvlv~a~~ 267 (545)
T PLN02168 200 ETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGT-Y----------VQKRVYSSLDIHVGQSYSVLVTAKT 267 (545)
T ss_pred cceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCe-E----------CCCceeeEEEEcCCceEEEEEEcCC
Confidence 1246788999999999998754 5999999999999998643 2 2367779999999999999999974
No 32
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.83 E-value=4e-09 Score=95.79 Aligned_cols=89 Identities=13% Similarity=0.200 Sum_probs=73.2
Q ss_pred CceEEecCCCEEEEEEEeCCCCCceeecCCCccCCCCCCCCC-------------CC--CCCccCCCCeEEEEEEecCce
Q 007635 60 GAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGV-------------QG--TNCPIPSQWNWTYQFQVKDQI 124 (595)
Q Consensus 60 GP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv-------------~~--tq~~I~PG~~~tY~f~~~~~~ 124 (595)
.+.++++.|+.+++.+.|....++.+|+||....-....++. ++ .-..|+||+..+.+|++ +.+
T Consensus 33 ~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~-~~~ 111 (138)
T PF07731_consen 33 TPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRA-DNP 111 (138)
T ss_dssp TSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEE-TST
T ss_pred cceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEe-ecc
Confidence 679999999999999999999999999999877421111111 11 22458999999999999 689
Q ss_pred eeeEEeccchhhhccCccccEEEcc
Q 007635 125 GSFFYFPSLNLQRVSGGFGPVIINN 149 (595)
Q Consensus 125 Gt~wYH~H~~~q~~~Gl~G~liV~~ 149 (595)
|.|.||||...+...||.+.+.|.+
T Consensus 112 G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 112 GPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEEEEESSHHHHHTT-EEEEEECH
T ss_pred eEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999986
No 33
>PRK10883 FtsI repressor; Provisional
Probab=98.81 E-value=2.1e-07 Score=101.52 Aligned_cols=221 Identities=11% Similarity=0.050 Sum_probs=130.6
Q ss_pred eEEEEEECCCCCCceEEecCCCEEEEEEEeCCC-CCceeec-CCCccCCCCCCCCCC----C--CCCccCCCCeEEEEEE
Q 007635 48 PQQVIAINGKFPGAVLNATTNNNIVINVQNDLD-ESLLMTW-PGIQMRRNSWQDGVQ----G--TNCPIPSQWNWTYQFQ 119 (595)
Q Consensus 48 ~~~~~~~Ng~~PGP~i~v~~Gd~v~v~v~N~l~-~~~siH~-HG~~~~~~~~~DGv~----~--tq~~I~PG~~~tY~f~ 119 (595)
....+++||+. .|.|.|+.| ++++|+.|... ....+++ +|.... --..||-+ . .+..|.||++++.-.+
T Consensus 208 ~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~-vIa~DGg~~~~P~~~~~l~l~pGeR~dvlVd 284 (471)
T PRK10883 208 VGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLH-VIAGDQGFLPAPVSVKQLSLAPGERREILVD 284 (471)
T ss_pred cCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEE-EEEeCCCcccCCcEeCeEEECCCCeEEEEEE
Confidence 34678999985 789999875 89999999976 5567777 554221 13467532 1 3456899999999999
Q ss_pred ecCceeeeEEeccchhhhccCcccc------------EEEccCCCCCCCCCCCCCceeEeeeecccccHHHHHH-HHhcC
Q 007635 120 VKDQIGSFFYFPSLNLQRVSGGFGP------------VIINNRKVIPIPFDQPEGDIIFLIGDWYTRNHTALRT-ALDSG 186 (595)
Q Consensus 120 ~~~~~Gt~wYH~H~~~q~~~Gl~G~------------liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~-~~~~~ 186 (595)
+. +.+.+.+++-......+++.+. +-++.....+ +. ....+..+............. .+.-+
T Consensus 285 ~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~p~~l~~~~~~~~~~~~~~~~~l~ 359 (471)
T PRK10883 285 MS-NGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLP-LV---TDNLPMRLLPDEIMEGSPIRSREISLG 359 (471)
T ss_pred CC-CCceEEEECCCccccccccccccCCccccccceeEEEEcccccc-CC---CCcCChhhcCCCCCCCCCcceEEEEec
Confidence 84 5567777663211111111111 1111110000 00 000111000000000000000 00000
Q ss_pred CCCCCCceEEEccCCCCCCCCccCCCCCcceEEEecCCCEEEEEEEEcCCCceEEEEEeCccceeeeccCccccc---ee
Q 007635 187 KDLDMPDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQ---QN 263 (595)
Q Consensus 187 ~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi~~DG~~~~p---~~ 263 (595)
.+.+.|||+.+.. ....++++.|++.+|+|.|. ..|.||||+|.|+|++.||....+ ..
T Consensus 360 -----~~~~~INg~~~~~----------~~~~~~~~~g~~e~W~~~n~---~~HP~HlHg~~FqVl~~~G~~~~~~~~gw 421 (471)
T PRK10883 360 -----DDLPGINGALWDM----------NRIDVTAQQGTWERWTVRAD---MPQAFHIEGVMFLIRNVNGAMPFPEDRGW 421 (471)
T ss_pred -----CCcCccCCcccCC----------CcceeecCCCCEEEEEEECC---CCcCEeECCccEEEEEecCCCCCccccCc
Confidence 1234799998621 12347899999999999886 268999999999999999985543 34
Q ss_pred ecEEEEcCCcEEEEEEEcCCCCCc--ceEEEEeee
Q 007635 264 YTSFEIHVGQSYSFLVTMDQNASS--DYYIVASAR 296 (595)
Q Consensus 264 ~~~l~i~pG~R~dvlv~~~~~~g~--~y~i~~~~~ 296 (595)
.|++.+. +++.+++++++..++ .|-++++..
T Consensus 422 kDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiL 454 (471)
T PRK10883 422 KDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTL 454 (471)
T ss_pred CcEEEcC--CeEEEEEEecCCCCCCCcEEeecccc
Confidence 6999993 579999999975542 476777654
No 34
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.77 E-value=4.1e-07 Score=100.97 Aligned_cols=233 Identities=16% Similarity=0.170 Sum_probs=138.6
Q ss_pred ceEEEccCCCCCCCCccCCCCCcceEEEecCCCEEEEEEEEcCCCceEEEEEeCccceee-eccCccccceeecEEEEcC
Q 007635 193 DGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLV-ETEGHYTSQQNYTSFEIHV 271 (595)
Q Consensus 193 d~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi-~~DG~~~~p~~~~~l~i~p 271 (595)
..++|||+.. .|.|+++.|+++++++.|-... ...+|.||..+..- ..||... ..-.|.|
T Consensus 49 ~vi~vNGq~P-------------GPtI~~~~GD~v~V~V~N~L~~-~ttIHWHGl~q~~t~w~DGv~~-----TQcPI~P 109 (596)
T PLN00044 49 EAIGINGQFP-------------GPALNVTTNWNLVVNVRNALDE-PLLLTWHGVQQRKSAWQDGVGG-----TNCAIPA 109 (596)
T ss_pred EEEEEcCcCC-------------CCcEEEECCCEEEEEEEeCCCC-CccEEECCccCCCCccccCCCC-----CcCCcCC
Confidence 4799999975 5999999999999999999764 56778888655432 4799632 3358999
Q ss_pred CcEEEEEEEcCCCCCcceEEEEeeecccccccccceeEEEEEecCCCCCCCCCCCCCCCCCCc-----cccccCcccccc
Q 007635 272 GQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGAASGPLPEAPSDIYN-----QWAAMTQPRSIR 346 (595)
Q Consensus 272 G~R~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~~p~~~~-----~~~~~~~~~~~~ 346 (595)
|+++...+++++.+| +||.+++...-.. +.+.+ +++.+.... .+.|...+...+ .||.......+.
T Consensus 110 G~sftY~F~~~dq~G-T~WYHsH~~~Q~~---~Gl~G-alII~~~~~----~~~P~~~~~~~e~~i~l~DW~~~~~~~~~ 180 (596)
T PLN00044 110 GWNWTYQFQVKDQVG-SFFYAPSTALHRA---AGGYG-AITINNRDV----IPIPFGFPDGGDITLFIADWYARDHRALR 180 (596)
T ss_pred CCcEEEEEEeCCCCc-eeEeeccchhhhh---CcCee-EEEEcCccc----ccccccCCcccceEEEecccccCCHHHHH
Confidence 999999999965678 9999997642111 11222 333332111 111110010001 111111100000
Q ss_pred ccCCCCCCCCCCCCCCCcCccceeeEEEEecCCCcccCCeEEEEecCeeccCCCChhhhhhcccCCCcccCCCCCCCCCC
Q 007635 347 QNTSASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPETPIRLADKYNVKGAYKLDFPNKPLTR 426 (595)
Q Consensus 347 ~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~~~~~p~~~ 426 (595)
..+..+.... ..+ ...|||+.-...+ +.. .+ ++
T Consensus 181 ~~l~~g~~~~-------------------------~~d---~~lING~g~~~~n------------~~~------~~-~~ 213 (596)
T PLN00044 181 RALDAGDLLG-------------------------APD---GVLINAFGPYQYN------------DSL------VP-PG 213 (596)
T ss_pred HHHhcCCCCC-------------------------CCC---ceEEcccCccccC------------Ccc------cc-CC
Confidence 0000000000 001 1234553210000 000 00 00
Q ss_pred CCCCceeeeeecCCcEEEEEEecCCCC-ceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEE
Q 007635 427 PPRTDRSLINATYKGFIEIILQNNDTK-MQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILV 505 (595)
Q Consensus 427 ~~~~~~~v~~~~~g~~ve~vl~N~~~~-~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf 505 (595)
....+++++.|+++.|.|.|.+.. ..-|+|.||+|.||+.+ |.+ ..|..-|.+.+.+|....+.+
T Consensus 214 ---~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~D-G~~----------v~P~~vd~i~I~~GQRydVLV 279 (596)
T PLN00044 214 ---ITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAE-GSY----------TSQQNYTNLDIHVGQSYSFLL 279 (596)
T ss_pred ---CccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeC-Ccc----------cCceeeeeEEEcCCceEEEEE
Confidence 012368899999999999998754 57899999999999996 432 347888999999999999999
Q ss_pred EeCCc-e--eee
Q 007635 506 SLDNV-G--VWN 514 (595)
Q Consensus 506 ~adNp-G--~W~ 514 (595)
++|.+ | -||
T Consensus 280 ~a~q~~~~~Y~i 291 (596)
T PLN00044 280 TMDQNASTDYYV 291 (596)
T ss_pred ECCCCCCCceEE
Confidence 99875 5 466
No 35
>PRK02710 plastocyanin; Provisional
Probab=98.68 E-value=2.3e-07 Score=81.93 Aligned_cols=74 Identities=14% Similarity=0.289 Sum_probs=56.3
Q ss_pred CceEEecCCCEEEEEEEeCCCCCceeecCCCccCCCCCCCCCCCCCCccCCCCeEEEEEEecCceeeeEEeccchhhhcc
Q 007635 60 GAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVS 139 (595)
Q Consensus 60 GP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~tY~f~~~~~~Gt~wYH~H~~~q~~~ 139 (595)
.+.|++++||+| +++|.-..++++.+.|.. +...+...+.||++++|.|+. +|+|-|+|- .|...
T Consensus 46 P~~i~v~~Gd~V--~~~N~~~~~H~v~~~~~~--------~~~~~~~~~~pg~t~~~tF~~---~G~y~y~C~--~H~~~ 110 (119)
T PRK02710 46 PSTLTIKAGDTV--KWVNNKLAPHNAVFDGAK--------ELSHKDLAFAPGESWEETFSE---AGTYTYYCE--PHRGA 110 (119)
T ss_pred CCEEEEcCCCEE--EEEECCCCCceEEecCCc--------cccccccccCCCCEEEEEecC---CEEEEEEcC--CCccC
Confidence 479999999985 567876778888765431 111122357899999999974 799999997 67778
Q ss_pred CccccEEEc
Q 007635 140 GGFGPVIIN 148 (595)
Q Consensus 140 Gl~G~liV~ 148 (595)
||.|.|+|+
T Consensus 111 gM~G~I~V~ 119 (119)
T PRK02710 111 GMVGKITVE 119 (119)
T ss_pred CcEEEEEEC
Confidence 999999984
No 36
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.68 E-value=2e-06 Score=95.48 Aligned_cols=240 Identities=13% Similarity=0.119 Sum_probs=142.2
Q ss_pred ceEEEccCCCCCCCCccCCCCCcceEEEecCCCEEEEEEEEcCCCceEEEEEeCcccee-eeccCccccceeecEEEEcC
Q 007635 193 DGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLL-VETEGHYTSQQNYTSFEIHV 271 (595)
Q Consensus 193 d~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~v-i~~DG~~~~p~~~~~l~i~p 271 (595)
..++|||+.. .|.|+++.|+++++++.|--......+|.||..+.- -..||.+. +..-.|.|
T Consensus 28 ~~~~~NG~~P-------------GP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~----vTQcpI~P 90 (538)
T TIGR03390 28 YSVVVNGTSP-------------GPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPL----ASQWPIPP 90 (538)
T ss_pred EEEEECCcCC-------------CCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcc----cccCCCCC
Confidence 4799999875 599999999999999999865445667777765432 24799764 22335889
Q ss_pred CcEEEEEEEcC-CCCCcceEEEEeeecccccccccceeEEEEEecCCCCCCCCCCCCCCCC--CCccccccCcccccccc
Q 007635 272 GQSYSFLVTMD-QNASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGAASGPLPEAPSD--IYNQWAAMTQPRSIRQN 348 (595)
Q Consensus 272 G~R~dvlv~~~-~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~~p~--~~~~~~~~~~~~~~~~~ 348 (595)
|+.+...++++ +.+| .||.+.+... +. .. ..|.|...+.. ..+... .-. +--.+|.......+...
T Consensus 91 G~sf~Y~f~~~~~q~G-T~WYHsH~~~--Q~--~~--l~G~lIV~~~~---~~~~~~-d~e~~l~l~Dw~~~~~~~~~~~ 159 (538)
T TIGR03390 91 GHFFDYEIKPEPGDAG-SYFYHSHVGF--QA--VT--AFGPLIVEDCE---PPPYKY-DDERILLVSDFFSATDEEIEQG 159 (538)
T ss_pred CCcEEEEEEecCCCCe-eeEEecCCch--hh--hc--ceeEEEEccCC---ccCCCc-cCcEEEEEeCCCCCCHHHHHhh
Confidence 99998888875 3568 9999988632 21 11 33333333321 001000 000 00011111110000000
Q ss_pred CCCCCCCCCCCCCCCcCccceeeEEEEecCCCcccCCeEEEEecCeeccCCCChhhhhhcccCCCcccCCCCCCCCCCCC
Q 007635 349 TSASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPETPIRLADKYNVKGAYKLDFPNKPLTRPP 428 (595)
Q Consensus 349 l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~~~~~p~~~~~ 428 (595)
+. ..... .........|||+......... .. . ...
T Consensus 160 ~~-------------------------~~~~~-~~~~~d~~liNG~~~~~~~~~~-------~~----------~--~~~ 194 (538)
T TIGR03390 160 LL-------------------------STPFT-WSGETEAVLLNGKSGNKSFYAQ-------IN----------P--SGS 194 (538)
T ss_pred hh-------------------------ccCCc-cCCCCceEEECCcccccccccc-------cc----------C--CCC
Confidence 00 00000 0001123567876421100000 00 0 011
Q ss_pred CCceeeeeecCCcEEEEEEecCCCC-ceeeeecCce-EEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEE
Q 007635 429 RTDRSLINATYKGFIEIILQNNDTK-MQSFHMDGYS-FFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVS 506 (595)
Q Consensus 429 ~~~~~v~~~~~g~~ve~vl~N~~~~-~HP~HlHG~~-F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~ 506 (595)
| ....++++.|+++.|.|.|.+.. ..-|++.||. |+|++.++. +..|...|++.|.+|+-..|.++
T Consensus 195 ~-~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~-----------~~~P~~v~~l~l~~GqRydVlv~ 262 (538)
T TIGR03390 195 C-MLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGS-----------YTKPAKIDHLQLGGGQRYSVLFK 262 (538)
T ss_pred C-cceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCC-----------CCCceEeCeEEEccCCEEEEEEE
Confidence 1 13568899999999999999865 4899999999 999999743 23488889999999999999999
Q ss_pred eCCc--------eeeeeee
Q 007635 507 LDNV--------GVWNLRV 517 (595)
Q Consensus 507 adNp--------G~W~~HC 517 (595)
++++ |.|.++-
T Consensus 263 ~~~~~~~~~~~~~~Y~ir~ 281 (538)
T TIGR03390 263 AKTEDELCGGDKRQYFIQF 281 (538)
T ss_pred CCCccccccCCCCcEEEEE
Confidence 9864 7765553
No 37
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.66 E-value=2.4e-06 Score=95.00 Aligned_cols=252 Identities=14% Similarity=0.136 Sum_probs=139.2
Q ss_pred ceEEEccCCCCCCCCccCCCCCcceEEEecCCCEEEEEEEEcCCCceEEEEEeCcccee-eeccCccccceeecEEEEcC
Q 007635 193 DGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLL-VETEGHYTSQQNYTSFEIHV 271 (595)
Q Consensus 193 d~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~v-i~~DG~~~~p~~~~~l~i~p 271 (595)
..++|||+.. .|.|++++|+++++++.|........+|+||+...- -..||..- +..-.|.|
T Consensus 21 ~~~~~Ng~~p-------------GP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~----vtq~~I~P 83 (541)
T TIGR03388 21 LVIGINGQFP-------------GPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAG----VTQCAINP 83 (541)
T ss_pred eEEEECCcCC-------------CCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCc----cccCCcCC
Confidence 4799999975 499999999999999999875456788888875322 12588532 23457899
Q ss_pred CcEEEEEEEcCCCCCcceEEEEeeecccccccccceeEEEEEecCCCCCCCCCCCCCCCC--CCccccccCccccccccC
Q 007635 272 GQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGAASGPLPEAPSD--IYNQWAAMTQPRSIRQNT 349 (595)
Q Consensus 272 G~R~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~~p~--~~~~~~~~~~~~~~~~~l 349 (595)
|+++...+++++ +| .||.+.+...-.. ....+.|....... ...+... ... +--.+|...........+
T Consensus 84 G~s~~y~f~~~~-~G-t~wyH~H~~~q~~-----~Gl~G~liV~~~~~-~~~p~~~-d~e~~l~l~Dw~~~~~~~~~~~~ 154 (541)
T TIGR03388 84 GETFIYNFVVDR-PG-TYFYHGHYGMQRS-----AGLYGSLIVDVPDG-EKEPFHY-DGEFNLLLSDWWHKSIHEQEVGL 154 (541)
T ss_pred CCEEEEEEEcCC-CE-EEEEEecchHHhh-----ccceEEEEEecCCC-CCCCccc-cceEEEEeecccCCCHHHHHhhc
Confidence 999999999874 68 9999987531110 11223233222210 0001100 000 000011111000000000
Q ss_pred CCCCCCCCCCCCCCcCccceeeEEEEecCCCcccCCeEEEEecCeecc-CCCChhhhhhcccCCCcccCCCCCCCCCCCC
Q 007635 350 SASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFV-KPETPIRLADKYNVKGAYKLDFPNKPLTRPP 428 (595)
Q Consensus 350 ~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~-~p~~P~l~~~~~~~~g~~~~~~~~~p~~~~~ 428 (595)
. ..+. . .........+||+-.. ....... .. . ..+.+. .+...
T Consensus 155 ~-----~~~~----------------~-----~~~~~d~~liNG~g~~~~~~~~~~-~~-~-~~~~~~-------~~~~~ 198 (541)
T TIGR03388 155 S-----SKPM----------------R-----WIGEPQSLLINGRGQFNCSLAAKF-SS-T-NLPQCN-------LKGNE 198 (541)
T ss_pred c-----cCCC----------------c-----CCCCCcceEECCCCCCCCcccccc-Cc-c-ccchhh-------ccCCC
Confidence 0 0000 0 0000112356665211 0000000 00 0 000000 00000
Q ss_pred CCceeeeeecCCcEEEEEEecCCC-CceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEe
Q 007635 429 RTDRSLINATYKGFIEIILQNNDT-KMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSL 507 (595)
Q Consensus 429 ~~~~~v~~~~~g~~ve~vl~N~~~-~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~a 507 (595)
......++++.|+++.|.|.|.+. ..+.|+++||+|+||+.+++. ..|..-|.+.+.+|+-..|.+++
T Consensus 199 ~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa~DG~~-----------v~P~~v~~l~i~~GqR~dvlv~~ 267 (541)
T TIGR03388 199 QCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVEADGNY-----------VEPFTVKDIDIYSGETYSVLLTT 267 (541)
T ss_pred CCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEEEEEeCCEe-----------cccceeCeEEecCCCEEEEEEeC
Confidence 001235789999999999999874 569999999999999997432 24778899999999999999999
Q ss_pred CC-ce-eeeeee
Q 007635 508 DN-VG-VWNLRV 517 (595)
Q Consensus 508 dN-pG-~W~~HC 517 (595)
|. || .|-++-
T Consensus 268 ~~~~~~~y~ira 279 (541)
T TIGR03388 268 DQDPSRNYWISV 279 (541)
T ss_pred CCCCCCcEEEEE
Confidence 75 44 555553
No 38
>PLN02604 oxidoreductase
Probab=98.63 E-value=5.2e-08 Score=108.65 Aligned_cols=89 Identities=17% Similarity=0.200 Sum_probs=70.0
Q ss_pred eeecCCcEEEEEEecCC-CCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCceee
Q 007635 435 INATYKGFIEIILQNND-TKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGVW 513 (595)
Q Consensus 435 ~~~~~g~~ve~vl~N~~-~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~W 513 (595)
+.++.|++|++.+.|.. ...|++|+||... .+. .|.. .........|+||+...++|+++++|.|
T Consensus 57 i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~--~~~---~~~D---------G~~~~tq~~i~pg~s~~y~f~~~~~Gt~ 122 (566)
T PLN02604 57 ILAQQGDTVIVELKNSLLTENVAIHWHGIRQ--IGT---PWFD---------GTEGVTQCPILPGETFTYEFVVDRPGTY 122 (566)
T ss_pred EEEECCCEEEEEEEeCCCCCCCCEEeCCCCC--CCC---cccc---------CCCccccCccCCCCeEEEEEEcCCCEEE
Confidence 67889999999999995 5789999999951 111 0000 0112234578999999999999999999
Q ss_pred eeeeccccceeccceeEEEEeCCC
Q 007635 514 NLRVENLDRWYLGQETYMKIVNPE 537 (595)
Q Consensus 514 ~~HCHil~h~~~Gm~~~~~V~~~~ 537 (595)
.||||...|...||...+.|..++
T Consensus 123 wyH~H~~~q~~~Gl~G~liV~~~~ 146 (566)
T PLN02604 123 LYHAHYGMQREAGLYGSIRVSLPR 146 (566)
T ss_pred EEeeCcHHHHhCCCeEEEEEEecC
Confidence 999999999999999999998654
No 39
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.63 E-value=8.4e-07 Score=96.84 Aligned_cols=231 Identities=13% Similarity=0.050 Sum_probs=141.2
Q ss_pred CeeEEEEEECCCCCCceEEecCCCEEEEEEEeCC-CCCceeecCCCccCCCCCCCCCC----C-CCCccCCCCeEEEEEE
Q 007635 46 GVPQQVIAINGKFPGAVLNATTNNNIVINVQNDL-DESLLMTWPGIQMRRNSWQDGVQ----G-TNCPIPSQWNWTYQFQ 119 (595)
Q Consensus 46 G~~~~~~~~Ng~~PGP~i~v~~Gd~v~v~v~N~l-~~~~siH~HG~~~~~~~~~DGv~----~-tq~~I~PG~~~tY~f~ 119 (595)
|.......+||+. -|.+.+ ++..+++++.|.- .....+++.|..... -..||.+ . .+..+.|||+++..-+
T Consensus 186 ~~~g~~~~vnG~~-~p~~~~-~~g~~rlRl~n~~~~~~~~~~~~~~~~~V-i~~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 186 GFPGDTLLVNGAI-LPFKAV-PGGVVRLRLLNAGNARTYHLALGGGPLTV-IAVDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred CCCCCeEEECCCc-cceeec-CCCeEEEEEEecCCceEEEEEecCceEEE-EEeCCcCcCceeeeeEEecCcceEEEEEE
Confidence 4455667788843 345544 4555999999997 455666666554432 2456655 2 4567999999999998
Q ss_pred ecCceeeeEEeccchhhhccCccccEEEccCCCCCCCCCCCCCceeEeeeec-ccccHHHHHHHH-hcC----C-----C
Q 007635 120 VKDQIGSFFYFPSLNLQRVSGGFGPVIINNRKVIPIPFDQPEGDIIFLIGDW-YTRNHTALRTAL-DSG----K-----D 188 (595)
Q Consensus 120 ~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~-~~~~~~~~~~~~-~~~----~-----~ 188 (595)
.+ ..|++=+.|.. .+..+-+.+..-...... .++...+.+......|- .+.........+ +.+ . .
T Consensus 263 ~~-~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 338 (451)
T COG2132 263 MN-DGGAVTLTALG-EDMPDTLKGFRAPNPILT--PSYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLIG 338 (451)
T ss_pred cC-CCCeEEEEecc-ccCCceeeeeeccccccc--cccccccccccCCCcchhhccccccchhhcCCCcccccccchhhc
Confidence 85 47888888876 222222222222111110 00101111111111110 010000000000 010 0 0
Q ss_pred CCCCceEEEccCCCCCCCCccCCCCCcceEEEecCCCEEEEEEEEcCCCceEEEEEeCccceeeeccCccc--cceeecE
Q 007635 189 LDMPDGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYT--SQQNYTS 266 (595)
Q Consensus 189 ~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi~~DG~~~--~p~~~~~ 266 (595)
.-....+.+||+.+.. +...+.++.|+++||+|.|-+. ..|.||+||+.|.|++.|...- .+...|+
T Consensus 339 ~~~~~~~~~n~~~~~~----------~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~~~~~~~~~~~kDT 407 (451)
T COG2132 339 GIGGYVWAINGKAFDD----------NRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGDAPAPGAAPGWKDT 407 (451)
T ss_pred ccccccccccCccCCC----------CcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecCCCcccccCccceE
Confidence 0112458888888631 2477899999999999999998 5899999999999999992211 2567899
Q ss_pred EEEcCCcEEEEEEEcCCCCCcceEEEEeee
Q 007635 267 FEIHVGQSYSFLVTMDQNASSDYYIVASAR 296 (595)
Q Consensus 267 l~i~pG~R~dvlv~~~~~~g~~y~i~~~~~ 296 (595)
+.+.+|+|+.+.++++ .+| .|.++++..
T Consensus 408 v~v~~~~~~~v~~~a~-~~g-~~~~HCH~l 435 (451)
T COG2132 408 VLVAPGERLLVRFDAD-YPG-PWMFHCHIL 435 (451)
T ss_pred EEeCCCeEEEEEEeCC-CCC-ceEEeccch
Confidence 9999999999999998 556 888888764
No 40
>PLN02191 L-ascorbate oxidase
Probab=98.59 E-value=4e-06 Score=93.56 Aligned_cols=254 Identities=14% Similarity=0.101 Sum_probs=137.7
Q ss_pred ceEEEccCCCCCCCCccCCCCCcceEEEecCCCEEEEEEEEcCCCceEEEEEeCcccee-eeccCccccceeecEEEEcC
Q 007635 193 DGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLL-VETEGHYTSQQNYTSFEIHV 271 (595)
Q Consensus 193 d~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~v-i~~DG~~~~p~~~~~l~i~p 271 (595)
..++|||+.. .|.|+++.|+++++++.|.-......+|.||....- -..||..- +..-.|.|
T Consensus 43 ~v~~vNg~~p-------------GP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~g----vtq~pI~P 105 (574)
T PLN02191 43 AVMTVNGQFP-------------GPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAG----VTQCAINP 105 (574)
T ss_pred eEEEECCcCC-------------CCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCc----cccCCcCC
Confidence 5899999875 499999999999999999865445777887765432 23587643 23346999
Q ss_pred CcEEEEEEEcCCCCCcceEEEEeeecccccccccceeEEEEEecCCCCCCCCCCCC-CCCCCCccccccCccccccccCC
Q 007635 272 GQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGAASGPLPE-APSDIYNQWAAMTQPRSIRQNTS 350 (595)
Q Consensus 272 G~R~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~-~~p~~~~~~~~~~~~~~~~~~l~ 350 (595)
|+++...+++++ +| .||.+.+...-.. ....|.|.......+. .+... ..-.+--.||...........+.
T Consensus 106 G~s~~Y~f~~~~-~G-T~wYHsH~~~q~~-----~Gl~G~liV~~~~~~~-~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~ 177 (574)
T PLN02191 106 GETFTYKFTVEK-PG-THFYHGHYGMQRS-----AGLYGSLIVDVAKGPK-ERLRYDGEFNLLLSDWWHESIPSQELGLS 177 (574)
T ss_pred CCeEEEEEECCC-Ce-EEEEeeCcHHHHh-----CCCEEEEEEccCCCCC-CCCCCCeeEEEeeeccccCChHHHHHhhc
Confidence 999999999974 68 9999988532110 1122323222211110 00000 00000001121110000000000
Q ss_pred CCCCCCCCCCCCCcCccceeeEEEEecCCCcccCCeEEEEecCeeccCCCChhhhhhcccCCCcccCCCCCCCCCCCCCC
Q 007635 351 ASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPETPIRLADKYNVKGAYKLDFPNKPLTRPPRT 430 (595)
Q Consensus 351 ~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~~~~~p~~~~~~~ 430 (595)
. .+.. .........|||+.-..-....... .+..+..+ ....+ +.+
T Consensus 178 ~---~~~~-----------------------~~~~~d~~liNG~g~~~~~~~~~~~--~~~~~~~~----~~~~n-~~~- 223 (574)
T PLN02191 178 S---KPMR-----------------------WIGEAQSILINGRGQFNCSLAAQFS--NGTELPMC----TFKEG-DQC- 223 (574)
T ss_pred c---CCCC-----------------------cCCCCCceEECCCCCCCCccccccc--CCcccccc----eeccC-CCC-
Confidence 0 0000 0000112345554211000000000 00000000 00000 001
Q ss_pred ceeeeeecCCcEEEEEEecCCC-CceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCC
Q 007635 431 DRSLINATYKGFIEIILQNNDT-KMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDN 509 (595)
Q Consensus 431 ~~~v~~~~~g~~ve~vl~N~~~-~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adN 509 (595)
...+++++.|+++.|.|.|.+. ..+-|++.||+|.|++.++. +..|...|.+.+.+|+...|.++++.
T Consensus 224 ~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~-----------~v~P~~v~~l~i~~GqRydVlV~a~~ 292 (574)
T PLN02191 224 APQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVEADGN-----------YITPFTTDDIDIYSGESYSVLLTTDQ 292 (574)
T ss_pred CceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEEcCCe-----------eccceEeeeEEEcCCCeEEEEEECCC
Confidence 1236889999999999999975 45899999999999999733 22478889999999999999999986
Q ss_pred -ce-eeeee
Q 007635 510 -VG-VWNLR 516 (595)
Q Consensus 510 -pG-~W~~H 516 (595)
+| .+-++
T Consensus 293 ~~~~~y~ir 301 (574)
T PLN02191 293 DPSQNYYIS 301 (574)
T ss_pred CCCCCEEEE
Confidence 44 34333
No 41
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.54 E-value=1.4e-07 Score=81.31 Aligned_cols=74 Identities=12% Similarity=0.250 Sum_probs=47.8
Q ss_pred CCCCceEEecCCCEEEEEEEeCCCCCceeecCCCccCCCCCCCCCCCCCCccCCCCeEEEEEEecCceeeeEEeccchhh
Q 007635 57 KFPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQ 136 (595)
Q Consensus 57 ~~PGP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~tY~f~~~~~~Gt~wYH~H~~~q 136 (595)
+|=...|+++.|+.|+|+++|....++.+...++.. ...|.||++.++.|+. +++|+|=|||....
T Consensus 31 ~f~P~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~------------~~~l~~g~~~~~~f~~-~~~G~y~~~C~~~~- 96 (104)
T PF13473_consen 31 GFSPSTITVKAGQPVTLTFTNNDSRPHEFVIPDLGI------------SKVLPPGETATVTFTP-LKPGEYEFYCTMHP- 96 (104)
T ss_dssp EEES-EEEEETTCEEEEEEEE-SSS-EEEEEGGGTE------------EEEE-TT-EEEEEEEE--S-EEEEEB-SSS--
T ss_pred eEecCEEEEcCCCeEEEEEEECCCCcEEEEECCCce------------EEEECCCCEEEEEEcC-CCCEEEEEEcCCCC-
Confidence 443469999999999999999987777776666432 2468999999999986 68999999998655
Q ss_pred hccCccccEEE
Q 007635 137 RVSGGFGPVII 147 (595)
Q Consensus 137 ~~~Gl~G~liV 147 (595)
. |.|-|+|
T Consensus 97 --~-m~G~liV 104 (104)
T PF13473_consen 97 --N-MKGTLIV 104 (104)
T ss_dssp --T-TB-----
T ss_pred --c-ceecccC
Confidence 2 6777775
No 42
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.51 E-value=2.6e-07 Score=81.24 Aligned_cols=88 Identities=15% Similarity=0.120 Sum_probs=65.9
Q ss_pred eeeeecCCcEEEEEEecCCCCceeeeecCceEEEEee--cccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCC-
Q 007635 433 SLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGM--DFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDN- 509 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~--~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adN- 509 (595)
.++.++.|+.|++.+.|.....+.+|+||...- .. .+|. +..- .-.|.||+....+|+++.
T Consensus 26 PtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~--~~~~~DG~-------------~~~~-~~~i~pG~~~~Y~~~~~~~ 89 (117)
T PF07732_consen 26 PTIRVREGDTVRITVTNNLDEPTSIHWHGLHQP--PSPWMDGV-------------PGVT-QCPIAPGESFTYEFTANQQ 89 (117)
T ss_dssp EEEEEETTEEEEEEEEEESSSGBSEEEETSBST--TGGGGSGG-------------TTTS-GSSBSTTEEEEEEEEESSC
T ss_pred CEEEEEcCCeeEEEEEeccccccccccceeeee--eeeecCCc-------------cccc-ceeEEeecceeeeEeeecc
Confidence 457889999999999999989999999996521 11 1111 0000 014788999999999998
Q ss_pred ceeeeeeeccccceeccceeEEEEeCC
Q 007635 510 VGVWNLRVENLDRWYLGQETYMKIVNP 536 (595)
Q Consensus 510 pG~W~~HCHil~h~~~Gm~~~~~V~~~ 536 (595)
+|.|.||||...+...||.-.+.|+++
T Consensus 90 ~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 90 AGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp SEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred ccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 999999999977656888888888754
No 43
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.41 E-value=2.4e-05 Score=86.15 Aligned_cols=228 Identities=18% Similarity=0.219 Sum_probs=140.4
Q ss_pred ceEEEccCCCCCCCCccCCCCCcceEEEecCCCEEEEEEEEcCCCceEEEEEeCccc-eeeeccCccccceeecEEEEcC
Q 007635 193 DGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNL-LLVETEGHYTSQQNYTSFEIHV 271 (595)
Q Consensus 193 d~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~-~vi~~DG~~~~p~~~~~l~i~p 271 (595)
..++|||+-. .|.|.++.|+++.++++|-.. ..+.+|.+|... .--..||.++ ..=.|.|
T Consensus 48 ~vi~iNG~fP-------------GP~I~~~~gD~ivV~v~N~~~-~~~sihWhGv~q~kn~w~DG~~~-----TqCPI~P 108 (563)
T KOG1263|consen 48 QVITINGQFP-------------GPTINAEEGDTIVVNVVNRLD-EPFSIHWHGVRQRKNPWQDGVYI-----TQCPIQP 108 (563)
T ss_pred eeEeecCCCC-------------CCeEEEEeCCEEEEEEEeCCC-CceEEEeccccccCCccccCCcc-----ccCCcCC
Confidence 4789999985 599999999999999999955 467777777533 3445599554 3346899
Q ss_pred CcEEEEEEEcCCCCCcceEEEEeeecccccccccceeEEEEEecCCCCCCCCCCCCCCCCCCc-----cccccC-ccccc
Q 007635 272 GQSYSFLVTMDQNASSDYYIVASARFVNESFWQRVTGVAILHYSNSKGAASGPLPEAPSDIYN-----QWAAMT-QPRSI 345 (595)
Q Consensus 272 G~R~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~~p~~~~-----~~~~~~-~~~~~ 345 (595)
||.|--.+++++..| +||-+++...... ....|-|...... ..+.|...|. .+ .+|..+ ..+.+
T Consensus 109 g~~~tY~F~v~~q~G-T~~yh~h~~~~Ra-----~G~~G~liI~~~~---~~p~pf~~pd-~E~~ill~dW~~~~~~~~l 178 (563)
T KOG1263|consen 109 GENFTYRFTVKDQIG-TLWYHSHVSWQRA-----TGVFGALIINPRP---GLPVPFPKPD-KEFTILLGDWYKNLNHKNL 178 (563)
T ss_pred CCeEEEEEEeCCcce-eEEEeeccccccc-----cCceeEEEEcCCc---cCCCCCCCCC-ceeEEEeEeeccccCHHHH
Confidence 999999999997778 9999988754321 1133333332211 0111110110 01 112111 11111
Q ss_pred cccCCCCCCCCCCCCCCCcCccceeeEEEEecCCCcccCCeEEEEecCeeccCCCChhhhhhcccCCCcccCCCCCCCCC
Q 007635 346 RQNTSASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRSTLNGISFVKPETPIRLADKYNVKGAYKLDFPNKPLT 425 (595)
Q Consensus 346 ~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iNg~s~~~p~~P~l~~~~~~~~g~~~~~~~~~p~~ 425 (595)
+..+..+...|+ ..| ...|||.+.
T Consensus 179 ~~~~~~~~~~p~------------------------~~D---~~~iNg~~g----------------------------- 202 (563)
T KOG1263|consen 179 KNFLDRTGALPN------------------------PSD---GVLINGRSG----------------------------- 202 (563)
T ss_pred HHhhccCCCCCC------------------------CCC---ceEECCCCC-----------------------------
Confidence 111110000000 001 123454431
Q ss_pred CCCCCceeeeeecCCcEEEEEEecCCC--CceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEE
Q 007635 426 RPPRTDRSLINATYKGFIEIILQNNDT--KMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAI 503 (595)
Q Consensus 426 ~~~~~~~~v~~~~~g~~ve~vl~N~~~--~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~I 503 (595)
..+.|+..++++.|+++.|.|.|.+- ..+ |.+-||.+.||..+ |.+ ..|..-|++.+.+|....+
T Consensus 203 -~~~~~~~~l~v~pGktY~lRiiN~g~~~~l~-F~I~~H~ltvVe~D-g~y----------~~p~~~~~l~i~~GQ~~~v 269 (563)
T KOG1263|consen 203 -FLYNCTPTLTVEPGKTYRLRIINAGLNTSLN-FSIANHQLTVVEVD-GAY----------TKPFTTDSLDIHPGQTYSV 269 (563)
T ss_pred -cccCceeEEEEcCCCEEEEEEEccccccceE-EEECCeEEEEEEec-ceE----------EeeeeeceEEEcCCcEEEE
Confidence 11224677899999999999999863 345 99999999999996 433 2377779999999999999
Q ss_pred EEEeCC-ce-eeeeeec
Q 007635 504 LVSLDN-VG-VWNLRVE 518 (595)
Q Consensus 504 rf~adN-pG-~W~~HCH 518 (595)
..+||. |+ -|+-=|=
T Consensus 270 Lvtadq~~~~Y~i~~~~ 286 (563)
T KOG1263|consen 270 LLTADQSPGDYYIAASP 286 (563)
T ss_pred EEeCCCCCCcEEEEEEe
Confidence 999985 45 3444443
No 44
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.33 E-value=2.1e-06 Score=73.17 Aligned_cols=84 Identities=10% Similarity=0.139 Sum_probs=57.7
Q ss_pred CCCceEEecCCCEEEEEEEeCCCCCceeecCCCccCC-CCCCCCCCC-CCCccCCCCeEEEEEEecCceeeeEEeccchh
Q 007635 58 FPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRR-NSWQDGVQG-TNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNL 135 (595)
Q Consensus 58 ~PGP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~-~~~~DGv~~-tq~~I~PG~~~tY~f~~~~~~Gt~wYH~H~~~ 135 (595)
|-...|++++||+| +++|.-..++++.++...... .....+... +...+.||+++++.|.. +|+|.|||. .
T Consensus 14 F~P~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C~--~ 86 (99)
T TIGR02656 14 FEPAKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFST---PGTYTFYCE--P 86 (99)
T ss_pred EeCCEEEECCCCEE--EEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeCC---CEEEEEEcC--C
Confidence 44578999999986 566876677777765432110 000001111 22347899999998874 899999998 7
Q ss_pred hhccCccccEEEc
Q 007635 136 QRVSGGFGPVIIN 148 (595)
Q Consensus 136 q~~~Gl~G~liV~ 148 (595)
|..+||.|.|+|+
T Consensus 87 H~~aGM~G~I~V~ 99 (99)
T TIGR02656 87 HRGAGMVGKITVE 99 (99)
T ss_pred ccccCCEEEEEEC
Confidence 8888999999985
No 45
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.12 E-value=4.4e-06 Score=71.26 Aligned_cols=77 Identities=12% Similarity=0.268 Sum_probs=53.9
Q ss_pred CceEEecCCCEEEEEEEeCCCCCceeecCCCccCCCCCCCCCC------C-CCCccCCCCeEEEEEEecCceeeeEEecc
Q 007635 60 GAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQ------G-TNCPIPSQWNWTYQFQVKDQIGSFFYFPS 132 (595)
Q Consensus 60 GP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~------~-tq~~I~PG~~~tY~f~~~~~~Gt~wYH~H 132 (595)
.+.|++++||+| ++.|....++++.+=-- .+..|.. . ....+.||+++++.|+ ++|+|.|+|.
T Consensus 16 P~~i~V~~G~tV--~~~n~~~~~Hnv~~~~~-----~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C~ 85 (99)
T PF00127_consen 16 PSEITVKAGDTV--TFVNNDSMPHNVVFVAD-----GMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYCT 85 (99)
T ss_dssp SSEEEEETTEEE--EEEEESSSSBEEEEETT-----SSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEET
T ss_pred CCEEEECCCCEE--EEEECCCCCceEEEecc-----cccccccccccCccccceecCCCCEEEEEeC---CCeEEEEEcC
Confidence 479999999985 56665555666654220 1111110 1 1234789999999997 5899999998
Q ss_pred chhhhccCccccEEEc
Q 007635 133 LNLQRVSGGFGPVIIN 148 (595)
Q Consensus 133 ~~~q~~~Gl~G~liV~ 148 (595)
. |...||.|.|+|+
T Consensus 86 -P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 86 -P-HYEAGMVGTIIVE 99 (99)
T ss_dssp -T-TGGTTSEEEEEEE
T ss_pred -C-CcccCCEEEEEEC
Confidence 4 8999999999985
No 46
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.08 E-value=1.6e-05 Score=74.00 Aligned_cols=93 Identities=18% Similarity=0.188 Sum_probs=78.2
Q ss_pred eeeeeecCCcEEEEEEecCCCC-ceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCC-
Q 007635 432 RSLINATYKGFIEIILQNNDTK-MQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDN- 509 (595)
Q Consensus 432 ~~v~~~~~g~~ve~vl~N~~~~-~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adN- 509 (595)
..++.++.|+++.|.|.|.+.. .+.||++||+|.||+.++.. ..|...|++.+.+|+.+.|.++++.
T Consensus 59 ~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via~DG~~-----------v~p~~~~~l~l~~G~R~dvlv~~~~~ 127 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIAADGVP-----------VEPYKVDTLVLAPGQRYDVLVTADQP 127 (159)
T ss_dssp SGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEEETTEE-----------EEEEEESBEEE-TTEEEEEEEEECSC
T ss_pred cceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEeeecccc-----------ccccccceEEeeCCeEEEEEEEeCCC
Confidence 3568899999999999998764 69999999999999996432 2278889999999999999999987
Q ss_pred ceeeeeee----ccccceeccceeEEEEeC
Q 007635 510 VGVWNLRV----ENLDRWYLGQETYMKIVN 535 (595)
Q Consensus 510 pG~W~~HC----Hil~h~~~Gm~~~~~V~~ 535 (595)
+|.|.+++ +...+...++.+.+.+.+
T Consensus 128 ~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~ 157 (159)
T PF00394_consen 128 PGNYWIRASYQHDSINDPQNGNALAILRYD 157 (159)
T ss_dssp SSEEEEEEEESSSSSHSHGGGTTEEEEEET
T ss_pred CCeEEEEEecccCCCccCCCcEEEEEEEEC
Confidence 99999999 556678889888887653
No 47
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.89 E-value=6.5e-05 Score=61.79 Aligned_cols=74 Identities=9% Similarity=0.110 Sum_probs=51.4
Q ss_pred CceEEecCCCEEEEEEEeCCCCCceeecCCCccCCCCCCCCCCCCCCccCCCCeEEEEEEecCceeeeEEeccchhhhcc
Q 007635 60 GAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVS 139 (595)
Q Consensus 60 GP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~tY~f~~~~~~Gt~wYH~H~~~q~~~ 139 (595)
.+.|++++||+| ++.|+...++++++.........+ ....+.||++|++.|+ ++|+|-|||-...
T Consensus 10 P~~i~v~~GdtV--t~~N~d~~~Hnv~~~~g~~~~~~~------~~~~~~~g~~~~~tf~---~~G~y~y~C~~Hp---- 74 (83)
T TIGR02657 10 TPELHVKVGDTV--TWINREAMPHNVHFVAGVLGEAAL------KGPMMKKEQAYSLTFT---EAGTYDYHCTPHP---- 74 (83)
T ss_pred CCEEEECCCCEE--EEEECCCCCccEEecCCCCccccc------cccccCCCCEEEEECC---CCEEEEEEcCCCC----
Confidence 478999999996 568887778888765431100001 1123578888887774 6899999997533
Q ss_pred CccccEEEc
Q 007635 140 GGFGPVIIN 148 (595)
Q Consensus 140 Gl~G~liV~ 148 (595)
+|.|.|+|+
T Consensus 75 ~M~G~v~V~ 83 (83)
T TIGR02657 75 FMRGKVVVE 83 (83)
T ss_pred CCeEEEEEC
Confidence 599999985
No 48
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.81 E-value=7.9e-05 Score=81.92 Aligned_cols=97 Identities=15% Similarity=0.210 Sum_probs=68.2
Q ss_pred eCCCCeeE--EEEEECCCCCCceEEecCCCEEEEEEEeCCCCCceeecCCCccCCCCCCCCCCCCCCccCCCCeEEEEEE
Q 007635 42 ASPLGVPQ--QVIAINGKFPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQ 119 (595)
Q Consensus 42 ~~~dG~~~--~~~~~Ng~~PGP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~tY~f~ 119 (595)
+..+|.+. .+.++.-.|=-+.|+|++||.|.++++|.-...-.+ ||....+. | -+.-+.||++.+..|+
T Consensus 534 v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~~----n---I~~dv~PG~t~svtF~ 604 (635)
T PRK02888 534 VIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPNY----G---VNMEVAPQATASVTFT 604 (635)
T ss_pred eEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc--cceeeccc----C---ccEEEcCCceEEEEEE
Confidence 44566554 445556667667899999999999999953211122 55544321 1 1234789999999999
Q ss_pred ecCceeeeEEeccc---hhhhccCccccEEEccC
Q 007635 120 VKDQIGSFFYFPSL---NLQRVSGGFGPVIINNR 150 (595)
Q Consensus 120 ~~~~~Gt~wYH~H~---~~q~~~Gl~G~liV~~~ 150 (595)
+ +++|+|||||.. ..|. +|+|-|+|+++
T Consensus 605 a-dkPGvy~~~CtefCGa~H~--~M~G~~iVep~ 635 (635)
T PRK02888 605 A-DKPGVYWYYCTWFCHALHM--EMRGRMLVEPK 635 (635)
T ss_pred c-CCCEEEEEECCcccccCcc--cceEEEEEEeC
Confidence 8 699999999984 3443 89999999863
No 49
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.76 E-value=0.00025 Score=66.68 Aligned_cols=100 Identities=16% Similarity=0.138 Sum_probs=71.4
Q ss_pred EEEECCCCC-CceEEecCCCEEEEEEEeCCCCCcee--ecCCCcc--CCCCCCCCCC----C------CCCccCCCCeEE
Q 007635 51 VIAINGKFP-GAVLNATTNNNIVINVQNDLDESLLM--TWPGIQM--RRNSWQDGVQ----G------TNCPIPSQWNWT 115 (595)
Q Consensus 51 ~~~~Ng~~P-GP~i~v~~Gd~v~v~v~N~l~~~~si--H~HG~~~--~~~~~~DGv~----~------tq~~I~PG~~~t 115 (595)
.+-|||..= -++|.+..|-+|.|+|+|.-..++++ =--+-.+ ...-..||.. | +...|.+|++..
T Consensus 75 ~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~ 154 (196)
T PF06525_consen 75 PFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSAS 154 (196)
T ss_pred ceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceee
Confidence 566777654 47999999999999999985544432 1122111 1223455531 2 123588999998
Q ss_pred EEEEecCceeeeEEeccchhhhccCccccEEEccCC
Q 007635 116 YQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNRK 151 (595)
Q Consensus 116 Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 151 (595)
-.|... ++|+|||=|-...|..+||++-|+|.+.-
T Consensus 155 ~~~~~l-~aG~YwlvC~ipGHA~sGMw~~LiVs~~v 189 (196)
T PF06525_consen 155 GVYNDL-PAGYYWLVCGIPGHAESGMWGVLIVSSNV 189 (196)
T ss_pred EEEccC-CCceEEEEccCCChhhcCCEEEEEEecCc
Confidence 777653 69999999999999999999999999754
No 50
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.64 E-value=0.00018 Score=65.90 Aligned_cols=89 Identities=13% Similarity=0.054 Sum_probs=57.3
Q ss_pred eeeeecCCcEEEEEEecCCC-CceeeeecCceEEE--EeecccccCCCCCCCCCcCCCCcccEEEECC---C--cEEEEE
Q 007635 433 SLINATYKGFIEIILQNNDT-KMQSFHMDGYSFFV--VGMDFGIWTESNRNSYNKWDAISKCTTEVYP---G--AWTAIL 504 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~~-~~HP~HlHG~~F~V--v~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p---~--g~~~Ir 504 (595)
..+.++.|+.|++++.|.+. ..|.|-||.+.-.. -....|. +..-..-.+|+ + ++..++
T Consensus 52 P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~-------------~~~~~~~i~p~~~~g~~~~~~~t 118 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGL-------------GFVAGTGFLPPPKSGKFGYTDFT 118 (148)
T ss_pred CEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCC-------------CccccCcccCCCCCCccceeEEE
Confidence 34778999999999999875 45665555322100 0000010 11111222232 2 246889
Q ss_pred EEeCCceeeeeeeccccceeccceeEEEEe
Q 007635 505 VSLDNVGVWNLRVENLDRWYLGQETYMKIV 534 (595)
Q Consensus 505 f~adNpG~W~~HCHil~h~~~Gm~~~~~V~ 534 (595)
|+++.+|.+.||||+..|...||-..+.|+
T Consensus 119 f~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 119 YHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 999999999999999999999998888763
No 51
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.52 E-value=0.00039 Score=60.69 Aligned_cols=76 Identities=9% Similarity=0.083 Sum_probs=51.3
Q ss_pred CceEEecCCCEEEEEEEeCCCCCceeec-CCCccCCCCCCCCCCCCCCccCCCCeEEEEEEecCceeeeEEeccchhhhc
Q 007635 60 GAVLNATTNNNIVINVQNDLDESLLMTW-PGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRV 138 (595)
Q Consensus 60 GP~i~v~~Gd~v~v~v~N~l~~~~siH~-HG~~~~~~~~~DGv~~tq~~I~PG~~~tY~f~~~~~~Gt~wYH~H~~~q~~ 138 (595)
...|+|++||+|+....|. ++++.+ .+. .-+|... ..-.+|+++++.| +++|+|=|+|- .|..
T Consensus 14 P~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~------~p~g~~~--~~s~~g~~~~~tF---~~~G~Y~Y~C~--pH~~ 77 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK---GHNVETIKGM------IPEGAEA--FKSKINEEYTVTV---TEEGVYGVKCT--PHYG 77 (116)
T ss_pred CCEEEECCCCEEEEEECCC---CeeEEEccCC------CcCCccc--ccCCCCCEEEEEe---CCCEEEEEEcC--CCcc
Confidence 4789999999977666654 455543 221 1122111 1124577766666 36899999997 7788
Q ss_pred cCccccEEEccCC
Q 007635 139 SGGFGPVIINNRK 151 (595)
Q Consensus 139 ~Gl~G~liV~~~~ 151 (595)
.||.|.|+|.+++
T Consensus 78 ~GM~G~V~Vg~~~ 90 (116)
T TIGR02375 78 MGMVALIQVGDPP 90 (116)
T ss_pred CCCEEEEEECCCC
Confidence 8999999999853
No 52
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.44 E-value=0.00053 Score=58.41 Aligned_cols=83 Identities=14% Similarity=0.073 Sum_probs=58.0
Q ss_pred eeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCcee
Q 007635 433 SLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGV 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~ 512 (595)
..+.++.|++|+|+ |.+...|.+.++...+..-... .......+++.+.||....+.|.. ||.
T Consensus 17 ~~i~v~~G~~V~~~--N~~~~~H~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~pG~t~~~tF~~--~G~ 79 (99)
T TIGR02656 17 AKISIAAGDTVEWV--NNKGGPHNVVFDEDAVPAGVKE-------------LAKSLSHKDLLNSPGESYEVTFST--PGT 79 (99)
T ss_pred CEEEECCCCEEEEE--ECCCCCceEEECCCCCccchhh-------------hcccccccccccCCCCEEEEEeCC--CEE
Confidence 45788999999887 6677888888764322111000 001233467788899987776654 999
Q ss_pred eeeeeccccceeccceeEEEEe
Q 007635 513 WNLRVENLDRWYLGQETYMKIV 534 (595)
Q Consensus 513 W~~HCHil~h~~~Gm~~~~~V~ 534 (595)
|.|||-. |...||...+.|.
T Consensus 80 y~y~C~~--H~~aGM~G~I~V~ 99 (99)
T TIGR02656 80 YTFYCEP--HRGAGMVGKITVE 99 (99)
T ss_pred EEEEcCC--ccccCCEEEEEEC
Confidence 9999995 9999999998873
No 53
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.43 E-value=0.0022 Score=59.04 Aligned_cols=96 Identities=15% Similarity=0.140 Sum_probs=69.6
Q ss_pred EEECCCCCC-ceEEecCCCEEEEEEEeCCCCCceeecCCCccCCC-------CCCCCCC----CCC------CccCCCCe
Q 007635 52 IAINGKFPG-AVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRN-------SWQDGVQ----GTN------CPIPSQWN 113 (595)
Q Consensus 52 ~~~Ng~~PG-P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~-------~~~DGv~----~tq------~~I~PG~~ 113 (595)
+-+||+..| |+|.+..|-+|.|+|+|.-..++++-. -+.++ ...||.. |.. ..|.+|++
T Consensus 75 fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~i---v~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs 151 (195)
T TIGR03094 75 FNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKL---LPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHS 151 (195)
T ss_pred ccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEE---ecCCCCCCCccccccCceeEeecccccCccccccccccce
Confidence 456776554 799999999999999999766655433 22222 2346653 322 23667888
Q ss_pred EEEEEEecCceeeeEEeccchhhhccCccccEEEccCC
Q 007635 114 WTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINNRK 151 (595)
Q Consensus 114 ~tY~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 151 (595)
..=.|+. -++|+|||-|-..+|..+||+|-+||.+.-
T Consensus 152 ~sg~~~~-~~~G~YwlvCgipGHAesGMw~~lIVSs~v 188 (195)
T TIGR03094 152 RSGWWND-TSAGKYWLVCGITGHAESGMWAVVIVSSNV 188 (195)
T ss_pred eEEEecc-CCCeeEEEEcccCChhhcCcEEEEEEecCc
Confidence 5555555 589999999999999999999999999744
No 54
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.27 E-value=0.001 Score=59.10 Aligned_cols=59 Identities=14% Similarity=0.290 Sum_probs=50.3
Q ss_pred eeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCceee
Q 007635 434 LINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGVW 513 (595)
Q Consensus 434 v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~W 513 (595)
.+.++.|+.|+|++.|.+...|.+-++++.+ ...++||....++|.++-||.+
T Consensus 62 ~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~gi---------------------------s~~I~pGet~TitF~adKpG~Y 114 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENKSPISEGFSIDAYGI---------------------------SEVIKAGETKTISFKADKAGAF 114 (135)
T ss_pred EEEECCCCEEEEEEEeCCCCccceEECCCCc---------------------------ceEECCCCeEEEEEECCCCEEE
Confidence 4779999999999999998888877775421 2367889999999999999999
Q ss_pred eeeecc
Q 007635 514 NLRVEN 519 (595)
Q Consensus 514 ~~HCHi 519 (595)
-|||-.
T Consensus 115 ~y~C~~ 120 (135)
T TIGR03096 115 TIWCQL 120 (135)
T ss_pred EEeCCC
Confidence 999997
No 55
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.24 E-value=0.0012 Score=58.37 Aligned_cols=75 Identities=15% Similarity=0.186 Sum_probs=53.2
Q ss_pred ceEEecCCCEEEEEEEeCCCCCceeecCCCccCCCCCCCCCCCCCCccCCCCeEEEEEEecCceeeeEEeccchhhhccC
Q 007635 61 AVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVSG 140 (595)
Q Consensus 61 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~tY~f~~~~~~Gt~wYH~H~~~q~~~G 140 (595)
-.|++++||+ |++.|.....++++.-+.- .+ +|.- ...-.+|++|++.|. ++|+|-|+|- .|+.+|
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~---~~--~g~~--~~~~~~~~s~~~Tfe---~~G~Y~Y~C~--PH~~~g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGM---DP--EGSG--TLKAGINESFTHTFE---TPGEYTYYCT--PHPGMG 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCC---Cc--cccc--ccccCCCcceEEEec---ccceEEEEec--cCCCCC
Confidence 4999999999 6788887778887755542 11 2211 233345577777775 4899999995 457789
Q ss_pred ccccEEEcc
Q 007635 141 GFGPVIINN 149 (595)
Q Consensus 141 l~G~liV~~ 149 (595)
|.|.|+|++
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999974
No 56
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.14 E-value=0.0021 Score=56.01 Aligned_cols=76 Identities=12% Similarity=0.181 Sum_probs=51.6
Q ss_pred CCCceEEecCCCEEEEEEEeCC-CCCceeecCCCccCCCCCCCCCCCCCCccCCCCeEEEEEEecCceeeeEEeccchhh
Q 007635 58 FPGAVLNATTNNNIVINVQNDL-DESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQ 136 (595)
Q Consensus 58 ~PGP~i~v~~Gd~v~v~v~N~l-~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~tY~f~~~~~~Gt~wYH~H~~~q 136 (595)
|=.+.|+|++||+|+ ++|+. ..++++..-+ +..|.-+ .....||++|+|.|. ++|+|=|+|- .|
T Consensus 39 F~P~~ltV~~GdTVt--w~~~~d~~~HnV~s~~----~~~f~s~----~~~~~~G~t~s~Tf~---~~G~Y~Y~C~--pH 103 (115)
T TIGR03102 39 FDPPAIRVDPGTTVV--WEWTGEGGGHNVVSDG----DGDLDES----ERVSEEGTTYEHTFE---EPGIYLYVCV--PH 103 (115)
T ss_pred EeCCEEEECCCCEEE--EEECCCCCCEEEEECC----CCCcccc----ccccCCCCEEEEEec---CCcEEEEEcc--CC
Confidence 435789999999966 67543 3566665311 1111101 123578999999994 5899999996 55
Q ss_pred hccCccccEEEc
Q 007635 137 RVSGGFGPVIIN 148 (595)
Q Consensus 137 ~~~Gl~G~liV~ 148 (595)
...||.|.|+|+
T Consensus 104 ~~~gM~G~I~V~ 115 (115)
T TIGR03102 104 EALGMKGAVVVE 115 (115)
T ss_pred CCCCCEEEEEEC
Confidence 667999999985
No 57
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.70 E-value=0.007 Score=51.91 Aligned_cols=63 Identities=14% Similarity=0.185 Sum_probs=44.5
Q ss_pred eeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCcee
Q 007635 433 SLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGV 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~ 512 (595)
..++++.|+.|.+++.|.+...|-|.+.+. . -...++||+...+.|.++.||.
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~--------------------------~-~~~~l~~g~~~~~~f~~~~~G~ 87 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPDL--------------------------G-ISKVLPPGETATVTFTPLKPGE 87 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGGG--------------------------T-EEEEE-TT-EEEEEEEE-S-EE
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECCC--------------------------c-eEEEECCCCEEEEEEcCCCCEE
Confidence 457899999999999999988887777641 1 2257889999999999999999
Q ss_pred eeeeecccccee
Q 007635 513 WNLRVENLDRWY 524 (595)
Q Consensus 513 W~~HCHil~h~~ 524 (595)
+-|+|-+ |.+
T Consensus 88 y~~~C~~--~~~ 97 (104)
T PF13473_consen 88 YEFYCTM--HPN 97 (104)
T ss_dssp EEEB-SS--S-T
T ss_pred EEEEcCC--CCc
Confidence 9999998 554
No 58
>PRK02710 plastocyanin; Provisional
Probab=96.00 E-value=0.032 Score=49.11 Aligned_cols=72 Identities=15% Similarity=0.099 Sum_probs=50.0
Q ss_pred eeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCceee
Q 007635 434 LINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGVW 513 (595)
Q Consensus 434 v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~W 513 (595)
.++++.|+.|+|+ |.+...|.+.+.+... + ..+| ..+.||....+.|. .||.+
T Consensus 48 ~i~v~~Gd~V~~~--N~~~~~H~v~~~~~~~---------~-------------~~~~-~~~~pg~t~~~tF~--~~G~y 100 (119)
T PRK02710 48 TLTIKAGDTVKWV--NNKLAPHNAVFDGAKE---------L-------------SHKD-LAFAPGESWEETFS--EAGTY 100 (119)
T ss_pred EEEEcCCCEEEEE--ECCCCCceEEecCCcc---------c-------------cccc-cccCCCCEEEEEec--CCEEE
Confidence 4678899998875 6677889887643210 0 0112 34567777665555 49999
Q ss_pred eeeeccccceeccceeEEEEe
Q 007635 514 NLRVENLDRWYLGQETYMKIV 534 (595)
Q Consensus 514 ~~HCHil~h~~~Gm~~~~~V~ 534 (595)
-|+|=. |...||-..+.|+
T Consensus 101 ~y~C~~--H~~~gM~G~I~V~ 119 (119)
T PRK02710 101 TYYCEP--HRGAGMVGKITVE 119 (119)
T ss_pred EEEcCC--CccCCcEEEEEEC
Confidence 999985 8888999988873
No 59
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.98 E-value=0.028 Score=62.32 Aligned_cols=75 Identities=17% Similarity=0.207 Sum_probs=58.1
Q ss_pred eeeeecCCcEEEEEEecCC---CCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCC
Q 007635 433 SLINATYKGFIEIILQNND---TKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDN 509 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~---~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adN 509 (595)
..+.++.|+.|.+++.|.+ +..|.|-+-++. --..+.||....+.|++|.
T Consensus 555 ~~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~n---------------------------I~~dv~PG~t~svtF~adk 607 (635)
T PRK02888 555 REFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYG---------------------------VNMEVAPQATASVTFTADK 607 (635)
T ss_pred ceEEecCCCEEEEEEEeCCcccccccceeecccC---------------------------ccEEEcCCceEEEEEEcCC
Confidence 4477899999999999974 456877774433 1135668899999999999
Q ss_pred ceeeeeeeccccc-eeccceeEEEEe
Q 007635 510 VGVWNLRVENLDR-WYLGQETYMKIV 534 (595)
Q Consensus 510 pG~W~~HCHil~h-~~~Gm~~~~~V~ 534 (595)
||+|.+||...-+ .|.+|...+.|+
T Consensus 608 PGvy~~~CtefCGa~H~~M~G~~iVe 633 (635)
T PRK02888 608 PGVYWYYCTWFCHALHMEMRGRMLVE 633 (635)
T ss_pred CEEEEEECCcccccCcccceEEEEEE
Confidence 9999999986433 467888888886
No 60
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=95.79 E-value=0.067 Score=45.40 Aligned_cols=83 Identities=8% Similarity=0.064 Sum_probs=54.9
Q ss_pred eeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCcee
Q 007635 433 SLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGV 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~ 512 (595)
..+.++.|++|.|+.. +...|.+++=- +.+..... .+.. +..-.+..+.+|....+.|. .||.
T Consensus 17 ~~i~V~~G~tV~~~n~--~~~~Hnv~~~~----------~~~~~~~~--~~~~-~~~~~~~~~~~G~~~~~tF~--~~G~ 79 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNN--DSMPHNVVFVA----------DGMPAGAD--SDYV-PPGDSSPLLAPGETYSVTFT--KPGT 79 (99)
T ss_dssp SEEEEETTEEEEEEEE--SSSSBEEEEET----------TSSHTTGG--HCHH-STTCEEEEBSTTEEEEEEEE--SSEE
T ss_pred CEEEECCCCEEEEEEC--CCCCceEEEec----------cccccccc--cccc-CccccceecCCCCEEEEEeC--CCeE
Confidence 4578899999988765 55777776632 11100000 0000 11115667788888777766 9999
Q ss_pred eeeeeccccceeccceeEEEEe
Q 007635 513 WNLRVENLDRWYLGQETYMKIV 534 (595)
Q Consensus 513 W~~HCHil~h~~~Gm~~~~~V~ 534 (595)
+.|+|- - |+.+||-..+.|+
T Consensus 80 y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 80 YEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp EEEEET-T-TGGTTSEEEEEEE
T ss_pred EEEEcC-C-CcccCCEEEEEEC
Confidence 999999 4 9999999998885
No 61
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=94.70 E-value=0.35 Score=50.89 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=55.5
Q ss_pred CCCCCceEEecCCCEEEEEEEeCCCCCceeecCCCccCCCCCCCCCC--CCCCccCCCCeEEEEEEecCceeeeEEeccc
Q 007635 56 GKFPGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQ--GTNCPIPSQWNWTYQFQVKDQIGSFFYFPSL 133 (595)
Q Consensus 56 g~~PGP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~--~tq~~I~PG~~~tY~f~~~~~~Gt~wYH~H~ 133 (595)
+.+--..+.++.|+ +.+.|+|....++.+-.- +|+. +....|.||.+.++.+++ .+|+|-|+|
T Consensus 39 ~~c~p~~~tVpAG~-~~f~V~N~~~~~~Efe~~----------~~~~vv~e~EnIaPG~s~~l~~~L--~pGtY~~~C-- 103 (375)
T PRK10378 39 KQCEPMTLTVNAGK-TQFIIQNHSQKALEWEIL----------KGVMVVEERENIAPGFSQKMTANL--QPGEYDMTC-- 103 (375)
T ss_pred CccccCceeeCCCC-EEEEEEeCCCCcceEEee----------ccccccccccccCCCCceEEEEec--CCceEEeec--
Confidence 35556799999996 899999997665442110 2221 123469999999988777 499999999
Q ss_pred hhhhccCccccEEEccCC
Q 007635 134 NLQRVSGGFGPVIINNRK 151 (595)
Q Consensus 134 ~~q~~~Gl~G~liV~~~~ 151 (595)
+.+ ..+.|.|+|.+..
T Consensus 104 ~~~--~~~~g~l~Vtg~~ 119 (375)
T PRK10378 104 GLL--TNPKGKLIVKGEA 119 (375)
T ss_pred CcC--CCCCceEEEeCCC
Confidence 333 3358999998743
No 62
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=94.55 E-value=0.16 Score=41.53 Aligned_cols=72 Identities=7% Similarity=0.009 Sum_probs=45.9
Q ss_pred eeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCcee
Q 007635 433 SLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGV 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~ 512 (595)
..+.+..|+.|.| .|.+...|..+++...+ +.. .++. ..+.++.. .+++++.||.
T Consensus 11 ~~i~v~~GdtVt~--~N~d~~~Hnv~~~~g~~-------~~~-------------~~~~-~~~~~g~~--~~~tf~~~G~ 65 (83)
T TIGR02657 11 PELHVKVGDTVTW--INREAMPHNVHFVAGVL-------GEA-------------ALKG-PMMKKEQA--YSLTFTEAGT 65 (83)
T ss_pred CEEEECCCCEEEE--EECCCCCccEEecCCCC-------ccc-------------cccc-cccCCCCE--EEEECCCCEE
Confidence 3477899999987 57777889988753210 100 0111 12344543 4467789999
Q ss_pred eeeeeccccceeccceeEEEE
Q 007635 513 WNLRVENLDRWYLGQETYMKI 533 (595)
Q Consensus 513 W~~HCHil~h~~~Gm~~~~~V 533 (595)
|.|||=+ |- .|-..+.|
T Consensus 66 y~y~C~~--Hp--~M~G~v~V 82 (83)
T TIGR02657 66 YDYHCTP--HP--FMRGKVVV 82 (83)
T ss_pred EEEEcCC--CC--CCeEEEEE
Confidence 9999998 44 47777766
No 63
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=94.15 E-value=0.26 Score=43.07 Aligned_cols=77 Identities=12% Similarity=0.159 Sum_probs=49.1
Q ss_pred eeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCcee
Q 007635 433 SLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGV 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~ 512 (595)
..++++.|++|.|+..+. .|- +....... ++.. +.+.-.++.. +.++++.||.
T Consensus 15 ~~v~V~~GdTV~f~n~d~---~Hn---------v~~~~~~~--p~g~-----------~~~~s~~g~~--~~~tF~~~G~ 67 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDK---GHN---------VETIKGMI--PEGA-----------EAFKSKINEE--YTVTVTEEGV 67 (116)
T ss_pred CEEEECCCCEEEEEECCC---Cee---------EEEccCCC--cCCc-----------ccccCCCCCE--EEEEeCCCEE
Confidence 457899999999998874 243 22211000 0000 0011123444 4566689999
Q ss_pred eeeeeccccceeccceeEEEEeCCCC
Q 007635 513 WNLRVENLDRWYLGQETYMKIVNPEE 538 (595)
Q Consensus 513 W~~HCHil~h~~~Gm~~~~~V~~~~~ 538 (595)
+-|+|-. |..+||-..++|.++..
T Consensus 68 Y~Y~C~p--H~~~GM~G~V~Vg~~~~ 91 (116)
T TIGR02375 68 YGVKCTP--HYGMGMVALIQVGDPPA 91 (116)
T ss_pred EEEEcCC--CccCCCEEEEEECCCCc
Confidence 9999997 99999999999987643
No 64
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=93.91 E-value=0.28 Score=43.27 Aligned_cols=74 Identities=14% Similarity=0.074 Sum_probs=49.6
Q ss_pred CceEEecCCCEEEEEEEeCCCCCceeecCCCccCCCCCCCCCCCCCCccCCCCeEEEEEEecCceeeeEEeccc-hhhhc
Q 007635 60 GAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSL-NLQRV 138 (595)
Q Consensus 60 GP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~tY~f~~~~~~Gt~wYH~H~-~~q~~ 138 (595)
.+.|.+..|+.|++++++. +.-+++...++.. +.-+.||+.-...|++ +++|+|++.|.. -+..-
T Consensus 45 ~~~l~lp~g~~v~~~ltS~-DViHsf~ip~~~~------------k~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~gH 110 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE-DVIHSFWIPELGI------------KMDAIPGRTNSVTFTP-DKPGTYYGQCAEYCGAGH 110 (120)
T ss_dssp SSEEEEETTSEEEEEEEES-SS-EEEEETTCTE------------EEEEBTTCEEEEEEEE-SSSEEEEEEE-SSSSTTG
T ss_pred cceecccccceEeEEEEcC-CccccccccccCc------------ccccccccceeeeeee-ccCCcEEEcCccccCcCc
Confidence 4789999999999999996 3444443333321 2446899999999998 689999999983 11112
Q ss_pred cCccccEEE
Q 007635 139 SGGFGPVII 147 (595)
Q Consensus 139 ~Gl~G~liV 147 (595)
.-|.|-++|
T Consensus 111 ~~M~~~v~V 119 (120)
T PF00116_consen 111 SFMPGKVIV 119 (120)
T ss_dssp GG-EEEEEE
T ss_pred CCCeEEEEE
Confidence 235666554
No 65
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=93.12 E-value=0.89 Score=43.13 Aligned_cols=88 Identities=26% Similarity=0.249 Sum_probs=60.7
Q ss_pred ceEEEccCCCCCCCCccCCCCCcceEEEecCCCEEEEEEEEcCCCceEEEEEeCc-----cceeeeccCcccc-----ce
Q 007635 193 DGVLINGKGPYRYNTTLVPDGIEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNH-----NLLLVETEGHYTS-----QQ 262 (595)
Q Consensus 193 d~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh-----~~~vi~~DG~~~~-----p~ 262 (595)
+.+-+||... ...++-+..|-+|.++++|.+.. .|+|-+-.. ....++.||..+. +-
T Consensus 74 ~~~nfnGts~------------G~m~i~VPAGw~V~i~f~N~~~l-~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~ 140 (196)
T PF06525_consen 74 NPFNFNGTSN------------GQMTIYVPAGWNVQITFTNQESL-PHNLVIVQNDTPTPNNPPISSDGKILLYVGASPG 140 (196)
T ss_pred CceeeecccC------------CcEEEEEcCCCEEEEEEEcCCCC-CeeEEEEeCCCCCCCccccCCCCceeeeccCCCC
Confidence 4677888764 24899999999999999998865 566665422 2346677886552 11
Q ss_pred eecEEEEcCCcEEEEEEEcCCCCCcceEEEEee
Q 007635 263 NYTSFEIHVGQSYSFLVTMDQNASSDYYIVASA 295 (595)
Q Consensus 263 ~~~~l~i~pG~R~dvlv~~~~~~g~~y~i~~~~ 295 (595)
....--|.+||+.+..+... ++| .||+.+..
T Consensus 141 ~~~~~GI~~G~s~~~~~~~l-~aG-~YwlvC~i 171 (196)
T PF06525_consen 141 NYTSNGISSGQSASGVYNDL-PAG-YYWLVCGI 171 (196)
T ss_pred ccccCCccCCceeeEEEccC-CCc-eEEEEccC
Confidence 12233567999999777533 578 99997654
No 66
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=92.95 E-value=0.72 Score=44.57 Aligned_cols=78 Identities=12% Similarity=0.060 Sum_probs=55.5
Q ss_pred CceEEecCCCEEEEEEEeCCCCCceeecCCCccCCCCCCCCCCCCCCccCCCCeEEEEEEecCceeeeEEeccc-hhhhc
Q 007635 60 GAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSL-NLQRV 138 (595)
Q Consensus 60 GP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~tY~f~~~~~~Gt~wYH~H~-~~q~~ 138 (595)
...|.+..|+.|++++++.. .+ ||..... . | -+.-+-||..-+..|++ +++|+|...|.. -+..-
T Consensus 116 ~~~l~vp~g~~v~~~~ts~D----V~--Hsf~ip~---~-~---~k~da~PG~~~~~~~~~-~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 116 VNELVVPAGTPVRLQVTSKD----VI--HSFWVPE---L-G---GKIDAIPGQYNALWFNA-DEPGVYYGYCAELCGAGH 181 (201)
T ss_pred cCEEEEEcCCEEEEEEEeCc----hh--hcccccc---c-C---ceEEecCCcEEEEEEEe-CCCEEEEEEehhhCCcCc
Confidence 35899999999999999862 22 5554321 1 1 13446789999999988 689999999983 22222
Q ss_pred cCccccEEEccCC
Q 007635 139 SGGFGPVIINNRK 151 (595)
Q Consensus 139 ~Gl~G~liV~~~~ 151 (595)
..|.+-++|.+++
T Consensus 182 ~~M~~~v~v~~~~ 194 (201)
T TIGR02866 182 SLMLFKVVVVERE 194 (201)
T ss_pred cCCeEEEEEECHH
Confidence 5688888888743
No 67
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=92.68 E-value=1 Score=40.97 Aligned_cols=89 Identities=7% Similarity=0.050 Sum_probs=66.7
Q ss_pred CCCCceEEecCCCEEEEEEEeCCCC--Cce---------eecCCCccCCCCCCCCCCCCCCccCCCCeEEEEEEecCcee
Q 007635 57 KFPGAVLNATTNNNIVINVQNDLDE--SLL---------MTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIG 125 (595)
Q Consensus 57 ~~PGP~i~v~~Gd~v~v~v~N~l~~--~~s---------iH~HG~~~~~~~~~DGv~~tq~~I~PG~~~tY~f~~~~~~G 125 (595)
.|++-.+.++.|++++..+.|.-.- ..+ .--|.... +.+++-......+.||++-+..|..+ ++|
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~---~Dme~d~~~~v~L~PG~s~elvv~ft-~~g 134 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILA---DDMEHDDPNTVTLAPGKSGELVVVFT-GAG 134 (158)
T ss_pred ccCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhC---CccccCCcceeEeCCCCcEEEEEEec-CCc
Confidence 4678899999999999999997431 111 11233322 34555333345699999999999994 799
Q ss_pred eeEEeccchhhhccCccccEEEcc
Q 007635 126 SFFYFPSLNLQRVSGGFGPVIINN 149 (595)
Q Consensus 126 t~wYH~H~~~q~~~Gl~G~liV~~ 149 (595)
.|=.-|-..+|+..||.|-|.|.+
T Consensus 135 ~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 135 KYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred cEEEEecCCCcccCCcEEEEEeCC
Confidence 999999999999999999998864
No 68
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=92.50 E-value=0.5 Score=41.45 Aligned_cols=84 Identities=13% Similarity=0.118 Sum_probs=54.2
Q ss_pred CceEEecCC-CEEEEEEEeCCCCCceeecC----------------CCccCCCCCCCCCC-------CCCCccCCCCeEE
Q 007635 60 GAVLNATTN-NNIVINVQNDLDESLLMTWP----------------GIQMRRNSWQDGVQ-------GTNCPIPSQWNWT 115 (595)
Q Consensus 60 GP~i~v~~G-d~v~v~v~N~l~~~~siH~H----------------G~~~~~~~~~DGv~-------~tq~~I~PG~~~t 115 (595)
=..|.|+.+ ..|.|+|+|....+...==| |+.. ....|=+| ..-.-|.|||+.+
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~a--g~~~~Yvp~~d~~ViAhTkliggGes~s 92 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSA--GADNNYVKPGDARVIAHTKVIGGGEKTS 92 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhc--ccccCccCCCCcceEEEccccCCCceEE
Confidence 358999984 78999999974332211112 1110 00111122 1113488999999
Q ss_pred EEEEecC-ceee-eEEeccchhhhccCccccEE
Q 007635 116 YQFQVKD-QIGS-FFYFPSLNLQRVSGGFGPVI 146 (595)
Q Consensus 116 Y~f~~~~-~~Gt-~wYH~H~~~q~~~Gl~G~li 146 (595)
-.|+++. ++|+ |=|-|...+|.. .|.|.|.
T Consensus 93 vtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 93 VTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 9999863 5786 999999988886 6999875
No 69
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=91.00 E-value=2.7 Score=36.95 Aligned_cols=73 Identities=10% Similarity=0.077 Sum_probs=53.9
Q ss_pred eeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCcee
Q 007635 433 SLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGV 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~ 512 (595)
+.+.++.|+.|.+.+.+. +..|.|.+-+... -+.+.||....+.|.++.||.
T Consensus 46 ~~l~lp~g~~v~~~ltS~-DViHsf~ip~~~~---------------------------k~d~~PG~~~~~~~~~~~~G~ 97 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSE-DVIHSFWIPELGI---------------------------KMDAIPGRTNSVTFTPDKPGT 97 (120)
T ss_dssp SEEEEETTSEEEEEEEES-SS-EEEEETTCTE---------------------------EEEEBTTCEEEEEEEESSSEE
T ss_pred ceecccccceEeEEEEcC-CccccccccccCc---------------------------ccccccccceeeeeeeccCCc
Confidence 457889999999999996 5788888853321 235577888999999999999
Q ss_pred eeeeecccc-ceeccceeEEEE
Q 007635 513 WNLRVENLD-RWYLGQETYMKI 533 (595)
Q Consensus 513 W~~HCHil~-h~~~Gm~~~~~V 533 (595)
+-..|...= .-|..|...+.|
T Consensus 98 y~~~C~e~CG~gH~~M~~~v~V 119 (120)
T PF00116_consen 98 YYGQCAEYCGAGHSFMPGKVIV 119 (120)
T ss_dssp EEEEE-SSSSTTGGG-EEEEEE
T ss_pred EEEcCccccCcCcCCCeEEEEE
Confidence 999998643 346667766665
No 70
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=90.82 E-value=1.9 Score=44.57 Aligned_cols=62 Identities=16% Similarity=0.329 Sum_probs=39.2
Q ss_pred CCCCCCceEEecCCCEEEEEEEeCCCCCc--------eeecCC---CccCCCCCCC-----CCCC-CCCccCCCCeEEEE
Q 007635 55 NGKFPGAVLNATTNNNIVINVQNDLDESL--------LMTWPG---IQMRRNSWQD-----GVQG-TNCPIPSQWNWTYQ 117 (595)
Q Consensus 55 Ng~~PGP~i~v~~Gd~v~v~v~N~l~~~~--------siH~HG---~~~~~~~~~D-----Gv~~-tq~~I~PG~~~tY~ 117 (595)
|=.+||-++ ++.+.++|+.+++. +++|=. +..-.+.+-| |... .+.||.|||+.+.+
T Consensus 276 ~Y~VPGR~l------~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~ 349 (399)
T TIGR03079 276 NYDVPGRAL------RVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVK 349 (399)
T ss_pred EEecCCcEE------EEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEE
Confidence 446788888 45678888876543 234322 2222223333 6555 56799999999999
Q ss_pred EEecC
Q 007635 118 FQVKD 122 (595)
Q Consensus 118 f~~~~ 122 (595)
.++.|
T Consensus 350 v~aqd 354 (399)
T TIGR03079 350 MEAKD 354 (399)
T ss_pred EEEeh
Confidence 98854
No 71
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=90.61 E-value=0.99 Score=43.63 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=57.0
Q ss_pred eeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCcee
Q 007635 433 SLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGV 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~ 512 (595)
+.+.++.|+.|++.+.+.| ..|.|.+- +. +--..+-||....+.|.++.||.
T Consensus 117 ~~l~vp~g~~v~~~~ts~D-V~Hsf~ip-------~~--------------------~~k~da~PG~~~~~~~~~~~~G~ 168 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD-VIHSFWVP-------EL--------------------GGKIDAIPGQYNALWFNADEPGV 168 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc-hhhccccc-------cc--------------------CceEEecCCcEEEEEEEeCCCEE
Confidence 4577899999999999865 44655552 22 12234567888999999999999
Q ss_pred eeeeecccc-ceeccceeEEEEeCCC
Q 007635 513 WNLRVENLD-RWYLGQETYMKIVNPE 537 (595)
Q Consensus 513 W~~HCHil~-h~~~Gm~~~~~V~~~~ 537 (595)
+...|-..- ..|..|...+.|.+++
T Consensus 169 y~~~c~e~cG~~h~~M~~~v~v~~~~ 194 (201)
T TIGR02866 169 YYGYCAELCGAGHSLMLFKVVVVERE 194 (201)
T ss_pred EEEEehhhCCcCccCCeEEEEEECHH
Confidence 999998633 3478888888887654
No 72
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=90.48 E-value=1.9 Score=37.58 Aligned_cols=73 Identities=10% Similarity=-0.026 Sum_probs=47.1
Q ss_pred eeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCceee
Q 007635 434 LINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGVW 513 (595)
Q Consensus 434 v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~W 513 (595)
.++++.|+.|.|+-++ +...|.... .+.+.|+. ......+|.... +.++.||.+
T Consensus 43 ~ltV~~GdTVtw~~~~-d~~~HnV~s---------~~~~~f~s--------------~~~~~~~G~t~s--~Tf~~~G~Y 96 (115)
T TIGR03102 43 AIRVDPGTTVVWEWTG-EGGGHNVVS---------DGDGDLDE--------------SERVSEEGTTYE--HTFEEPGIY 96 (115)
T ss_pred EEEECCCCEEEEEECC-CCCCEEEEE---------CCCCCccc--------------cccccCCCCEEE--EEecCCcEE
Confidence 4778999999987443 345666532 22233321 011223455444 455899999
Q ss_pred eeeeccccceeccceeEEEEe
Q 007635 514 NLRVENLDRWYLGQETYMKIV 534 (595)
Q Consensus 514 ~~HCHil~h~~~Gm~~~~~V~ 534 (595)
-|+|-. |..+||-..+.|.
T Consensus 97 ~Y~C~p--H~~~gM~G~I~V~ 115 (115)
T TIGR03102 97 LYVCVP--HEALGMKGAVVVE 115 (115)
T ss_pred EEEccC--CCCCCCEEEEEEC
Confidence 999998 9999999888873
No 73
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=90.20 E-value=1.6 Score=39.67 Aligned_cols=93 Identities=13% Similarity=0.152 Sum_probs=66.5
Q ss_pred eeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCceeee
Q 007635 435 INATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGVWN 514 (595)
Q Consensus 435 ~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~W~ 514 (595)
+.++.|+++..++.|.....|=|=+- ++.... +.|.-..... + ..--...++.+.||....+-+.+.++|.+-
T Consensus 65 ~~v~aG~tv~~v~~n~~el~hef~~~---~~~~~~--~~~~~~~~~~-D-me~d~~~~v~L~PG~s~elvv~ft~~g~ye 137 (158)
T COG4454 65 FEVKAGETVRFVLKNEGELKHEFTMD---APDKNL--EHVTHMILAD-D-MEHDDPNTVTLAPGKSGELVVVFTGAGKYE 137 (158)
T ss_pred ccccCCcEEeeeecCcccceEEEecc---Cccccc--hhHHHhhhCC-c-cccCCcceeEeCCCCcEEEEEEecCCccEE
Confidence 55788999999999998888877665 221111 1111000000 0 011334689999999999999999999999
Q ss_pred eeeccccceeccceeEEEEe
Q 007635 515 LRVENLDRWYLGQETYMKIV 534 (595)
Q Consensus 515 ~HCHil~h~~~Gm~~~~~V~ 534 (595)
|-|-|-.|.+.||-.-++|.
T Consensus 138 ~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 138 FACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred EEecCCCcccCCcEEEEEeC
Confidence 99999999999999888874
No 74
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=86.76 E-value=1.7 Score=43.23 Aligned_cols=78 Identities=9% Similarity=-0.064 Sum_probs=58.3
Q ss_pred CceEEecCCCEEEEEEEeCCCCCceeecCCCccCCCCCCCCCCCCCCccCCCCeEEEEEEecCceeeeEEecc-chhhhc
Q 007635 60 GAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPS-LNLQRV 138 (595)
Q Consensus 60 GP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~tY~f~~~~~~Gt~wYH~H-~~~q~~ 138 (595)
...|.+..|..|+++++=. +.-+++...++. -+.-+-||...+..+++ +++|+|.-+|+ ..+..-
T Consensus 136 ~n~l~lPv~~~V~f~ltS~-DViHsF~IP~l~------------~k~d~iPG~~~~~~~~~-~~~G~Y~g~Cae~CG~gH 201 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSA-DVIHSFWIPQLG------------GKIDAIPGMTTELWLTA-NKPGTYRGICAEYCGPGH 201 (247)
T ss_pred cceEEEeCCCeEEEEEEec-hhceeEEecCCC------------ceeeecCCceEEEEEec-CCCeEEEEEcHhhcCCCc
Confidence 3899999999999998876 333333333331 23446789999999998 78999999999 445555
Q ss_pred cCccccEEEccCC
Q 007635 139 SGGFGPVIINNRK 151 (595)
Q Consensus 139 ~Gl~G~liV~~~~ 151 (595)
..|.|.++|.+++
T Consensus 202 ~~M~~~v~vvs~~ 214 (247)
T COG1622 202 SFMRFKVIVVSQE 214 (247)
T ss_pred ccceEEEEEEcHH
Confidence 6799999999865
No 75
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=84.67 E-value=3.7 Score=40.93 Aligned_cols=78 Identities=12% Similarity=0.078 Sum_probs=58.9
Q ss_pred eeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCcee
Q 007635 433 SLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGV 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~ 512 (595)
+.+.++.|+.|++.+... +..|.|.+- ..+.-+.+-||-...+.+.+|.||.
T Consensus 137 n~l~lPv~~~V~f~ltS~-DViHsF~IP---------------------------~l~~k~d~iPG~~~~~~~~~~~~G~ 188 (247)
T COG1622 137 NELVLPVGRPVRFKLTSA-DVIHSFWIP---------------------------QLGGKIDAIPGMTTELWLTANKPGT 188 (247)
T ss_pred ceEEEeCCCeEEEEEEec-hhceeEEec---------------------------CCCceeeecCCceEEEEEecCCCeE
Confidence 557789999999999876 456766663 3334445567788889999999999
Q ss_pred eeeeecccc-ceeccceeEEEEeCCCC
Q 007635 513 WNLRVENLD-RWYLGQETYMKIVNPEE 538 (595)
Q Consensus 513 W~~HCHil~-h~~~Gm~~~~~V~~~~~ 538 (595)
+-.+|+..- .-|..|-..+.|+++++
T Consensus 189 Y~g~Cae~CG~gH~~M~~~v~vvs~~~ 215 (247)
T COG1622 189 YRGICAEYCGPGHSFMRFKVIVVSQED 215 (247)
T ss_pred EEEEcHhhcCCCcccceEEEEEEcHHH
Confidence 999999765 34667777787887665
No 76
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=84.32 E-value=4.1 Score=35.83 Aligned_cols=80 Identities=20% Similarity=0.289 Sum_probs=53.5
Q ss_pred ceEEEecC-CCEEEEEEEEcCCCc----eEEEEEe-Cccceeeec-------cCccccce----eecEEEEcCCcEEEEE
Q 007635 216 YETINVDP-GKTYRVRVHNVGTST----SLNFRIQ-NHNLLLVET-------EGHYTSQQ----NYTSFEIHVGQSYSFL 278 (595)
Q Consensus 216 ~~~~~v~~-G~~~rlRliN~~~~~----~~~~~i~-gh~~~vi~~-------DG~~~~p~----~~~~l~i~pG~R~dvl 278 (595)
...|+|++ ++.+.+.|-|.|... .|++-|- .-.+.-|+. |-.|+++- ...+=.|++||..+|.
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svt 94 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVT 94 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEE
Confidence 47899998 488999999998643 3555443 123333333 44566532 2356678999999999
Q ss_pred EEcCC-CCCcceEEEEee
Q 007635 279 VTMDQ-NASSDYYIVASA 295 (595)
Q Consensus 279 v~~~~-~~g~~y~i~~~~ 295 (595)
|+++. .+|.+|....+.
T Consensus 95 F~~~~l~~g~~Y~f~CSF 112 (125)
T TIGR02695 95 FDVSKLSAGEDYTFFCSF 112 (125)
T ss_pred EECCCCCCCCcceEEEcC
Confidence 99864 355469887654
No 77
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=82.22 E-value=6.7 Score=34.86 Aligned_cols=73 Identities=8% Similarity=-0.027 Sum_probs=45.6
Q ss_pred eeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCceee
Q 007635 434 LINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGVW 513 (595)
Q Consensus 434 v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~W 513 (595)
.++++.|++|+|+ |.+...|-.+.=+-. . |..-+++..-++... .+.++-||.+
T Consensus 55 ~v~v~pGDTVtw~--~~d~~~Hnv~~~~~~---------~-------------~~g~~~~~~~~~~s~--~~Tfe~~G~Y 108 (128)
T COG3794 55 EVTVKPGDTVTWV--NTDSVGHNVTAVGGM---------D-------------PEGSGTLKAGINESF--THTFETPGEY 108 (128)
T ss_pred EEEECCCCEEEEE--ECCCCCceEEEeCCC---------C-------------cccccccccCCCcce--EEEecccceE
Confidence 4678999999986 455557766543221 0 111122222233433 3445569999
Q ss_pred eeeeccccceeccceeEEEEe
Q 007635 514 NLRVENLDRWYLGQETYMKIV 534 (595)
Q Consensus 514 ~~HCHil~h~~~Gm~~~~~V~ 534 (595)
.|.|-. |.-+||-..+.|.
T Consensus 109 ~Y~C~P--H~~~gM~G~IvV~ 127 (128)
T COG3794 109 TYYCTP--HPGMGMKGKIVVG 127 (128)
T ss_pred EEEecc--CCCCCcEEEEEeC
Confidence 999999 8888888878775
No 78
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=76.02 E-value=3.7 Score=43.64 Aligned_cols=77 Identities=16% Similarity=0.190 Sum_probs=47.5
Q ss_pred eEEecCCCEEEEEEEeCCCCCceeecCCCccCCCCCCCCCCCCCCccCCCCeEEEEEEecCceeeeEEeccch-hhhccC
Q 007635 62 VLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSLN-LQRVSG 140 (595)
Q Consensus 62 ~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~tY~f~~~~~~Gt~wYH~H~~-~q~~~G 140 (595)
+..|++||.|.+.++|--.....+| |.-.. +-| ..-.+.|-++-.|.|.+ +.+|-+||.|.-. .-.-+-
T Consensus 559 ef~Vkq~DEVt~l~tnld~Ved~th--gfv~p----~~~---v~~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh~e 628 (637)
T COG4263 559 EFKVKQGDEVTVLTTNLDEVEDLTH--GFVIP----NYG---VNMEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALHME 628 (637)
T ss_pred EEEEecCcEEEEEecccceeccccc--eeeec----cCc---eEEEEccCCceEEEEEc-cCCeeeehhhhhHHHHHHHh
Confidence 5677777777777777644333332 32111 011 12347888889999999 6899999998532 222234
Q ss_pred ccccEEEc
Q 007635 141 GFGPVIIN 148 (595)
Q Consensus 141 l~G~liV~ 148 (595)
|.|-++|+
T Consensus 629 m~~rmlve 636 (637)
T COG4263 629 MAGRMLVE 636 (637)
T ss_pred hccceeec
Confidence 66777776
No 79
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=75.57 E-value=13 Score=34.35 Aligned_cols=77 Identities=14% Similarity=0.175 Sum_probs=53.5
Q ss_pred eeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCcee
Q 007635 433 SLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGV 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~ 512 (595)
+.+.++.|+.|.+.+...| ..|.|.+- ..+=-+.+-||-...+.+.++.||.
T Consensus 73 n~LvLP~g~~Vr~~lTS~D-VIHSF~VP---------------------------~lgvK~DavPGr~n~l~~~~~~~G~ 124 (162)
T PTZ00047 73 KRLTLPTRTHIRFLITATD-VIHSWSVP---------------------------SLGIKADAIPGRLHKINTFILREGV 124 (162)
T ss_pred CCEEEeCCCEEEEEEEeCc-cceeeecc---------------------------ccCceeeccCCceEEEEEecCCCeE
Confidence 3466889999999988764 45777663 2222233447777788899999999
Q ss_pred eeeeecccc-ceeccceeEEEEeCCC
Q 007635 513 WNLRVENLD-RWYLGQETYMKIVNPE 537 (595)
Q Consensus 513 W~~HCHil~-h~~~Gm~~~~~V~~~~ 537 (595)
+...|.-+- .-|..|-..+.|..++
T Consensus 125 y~gqCsElCG~gHs~M~~~V~vvs~~ 150 (162)
T PTZ00047 125 FYGQCSEMCGTLHGFMPIVVEAVSPE 150 (162)
T ss_pred EEEEcchhcCcCccCceEEEEEeCHH
Confidence 999999543 3456677767666543
No 80
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=74.51 E-value=26 Score=28.49 Aligned_cols=65 Identities=17% Similarity=0.332 Sum_probs=32.5
Q ss_pred EEEEEEEcCCCceEEEEEe-Cc--cceeeeccCcccc--------ceeecEEEEcCCcEEEEEEEcCCC---CCcceEEE
Q 007635 227 YRVRVHNVGTSTSLNFRIQ-NH--NLLLVETEGHYTS--------QQNYTSFEIHVGQSYSFLVTMDQN---ASSDYYIV 292 (595)
Q Consensus 227 ~rlRliN~~~~~~~~~~i~-gh--~~~vi~~DG~~~~--------p~~~~~l~i~pG~R~dvlv~~~~~---~g~~y~i~ 292 (595)
..|.+.|.+.. .+.|.+. |+ .|.|...+|..+- -+......|.|||...+-.+.+.. +| .|.+.
T Consensus 4 ~~l~v~N~s~~-~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G-~Y~~~ 81 (82)
T PF12690_consen 4 FTLTVTNNSDE-PVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPG-EYTLE 81 (82)
T ss_dssp EEEEEEE-SSS--EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SE-EEEEE
T ss_pred EEEEEEeCCCC-eEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCc-eEEEe
Confidence 35566666554 3444443 33 2333344554331 233567899999999999888764 46 88876
Q ss_pred E
Q 007635 293 A 293 (595)
Q Consensus 293 ~ 293 (595)
|
T Consensus 82 a 82 (82)
T PF12690_consen 82 A 82 (82)
T ss_dssp E
T ss_pred C
Confidence 4
No 81
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=73.48 E-value=18 Score=29.50 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=31.1
Q ss_pred ceEEecCCCEEEEEEEeCCCCCceeecCCCccCCCCCCCCCCCCC----CccCCCCeEEEEEEecCc---eeeeEE
Q 007635 61 AVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTN----CPIPSQWNWTYQFQVKDQ---IGSFFY 129 (595)
Q Consensus 61 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq----~~I~PG~~~tY~f~~~~~---~Gt~wY 129 (595)
=+|+..-|++..+.|.|.- |-.+ =-|+||-..+| ..|+||++.+|+++.+.. +|+|..
T Consensus 16 v~l~f~sgq~~D~~v~d~~---------g~~v--wrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 16 VTLQFPSGQRYDFVVKDKE---------GKEV--WRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEEESSS--EEEEEE-TT-----------EE--EETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEEeCCCCEEEEEEECCC---------CCEE--EEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 3566666666666666552 1111 14788877555 449999999999999733 688853
No 82
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=73.47 E-value=14 Score=38.55 Aligned_cols=70 Identities=20% Similarity=0.341 Sum_probs=36.5
Q ss_pred eeEEEEEECCCCCCceEEecCCCEEEEEEEeCCCCCcee---ecCCCccCC-------CCCC------CCCCC-CCCccC
Q 007635 47 VPQQVIAINGKFPGAVLNATTNNNIVINVQNDLDESLLM---TWPGIQMRR-------NSWQ------DGVQG-TNCPIP 109 (595)
Q Consensus 47 ~~~~~~~~Ng~~PGP~i~v~~Gd~v~v~v~N~l~~~~si---H~HG~~~~~-------~~~~------DGv~~-tq~~I~ 109 (595)
++.++...|=+.||-++ ++.++|+|+.+++..| -.-|++... ..+- +|... .+.||+
T Consensus 249 V~~~v~~A~Y~vpgR~l------~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~pI~ 322 (381)
T PF04744_consen 249 VKVKVTDATYRVPGRTL------TMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSPIA 322 (381)
T ss_dssp EEEEEEEEEEESSSSEE------EEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S-B-
T ss_pred eEEEEeccEEecCCcEE------EEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCCcC
Confidence 45555555667888888 4568899988765432 122222210 0111 12223 346899
Q ss_pred CCCeEEEEEEecC
Q 007635 110 SQWNWTYQFQVKD 122 (595)
Q Consensus 110 PG~~~tY~f~~~~ 122 (595)
|||+.+.+.++.|
T Consensus 323 PGETrtl~V~a~d 335 (381)
T PF04744_consen 323 PGETRTLTVEAQD 335 (381)
T ss_dssp TT-EEEEEEEEE-
T ss_pred CCceEEEEEEeeh
Confidence 9999999999854
No 83
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=72.82 E-value=25 Score=33.71 Aligned_cols=77 Identities=13% Similarity=0.200 Sum_probs=56.4
Q ss_pred eeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCcee
Q 007635 433 SLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGV 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~ 512 (595)
+.+.++.|+.|++.+... +..|.|.+-+.. ..+ .+-||-...+.+.++.||.
T Consensus 116 ~~l~lp~g~~v~~~ltS~-DViHsf~vp~l~------------------------~k~---d~~PG~~~~~~~~~~~~G~ 167 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSS-DVIHSFSVPDLN------------------------LKM---DAIPGRINHLFFCPDRHGV 167 (194)
T ss_pred ceEEEeCCCEEEeeeecC-ccccceeccccC------------------------cee---ecCCCceEEEEEEcCCCEE
Confidence 346788999999999876 466777663221 222 3447888899999999999
Q ss_pred eeeeeccccc-eeccceeEEEEeCCC
Q 007635 513 WNLRVENLDR-WYLGQETYMKIVNPE 537 (595)
Q Consensus 513 W~~HCHil~h-~~~Gm~~~~~V~~~~ 537 (595)
+-..|.-+-- .|..|-..+.|.+++
T Consensus 168 y~g~C~e~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 168 FVGYCSELCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEEeehhhCcCcccCcEEEEEEcCC
Confidence 9999996543 477888888887664
No 84
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=72.22 E-value=14 Score=36.38 Aligned_cols=77 Identities=12% Similarity=0.146 Sum_probs=56.2
Q ss_pred eeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCcee
Q 007635 433 SLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGV 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~ 512 (595)
+.+.++.|+.|.+.+.+.| ..|.|.+- +. +=-..+-||....+.+.++.||.
T Consensus 140 n~l~lP~~~~v~~~~ts~D-ViHsf~ip-------~~--------------------~~k~d~~Pg~~~~~~~~~~~~g~ 191 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSAD-VIHSWTVP-------SL--------------------GVKVDAIPGRLNQLSFEPKRPGV 191 (228)
T ss_pred CeEEEeeCcEEEEEEEcCc-cccceecc-------cc--------------------CceeECCCCcceeEEEEeCCCEE
Confidence 5577899999999999864 55655552 22 12234457888888999999999
Q ss_pred eeeeeccccc-eeccceeEEEEeCCC
Q 007635 513 WNLRVENLDR-WYLGQETYMKIVNPE 537 (595)
Q Consensus 513 W~~HCHil~h-~~~Gm~~~~~V~~~~ 537 (595)
+...|.-+-. -|..|-..+.|..++
T Consensus 192 y~~~C~e~CG~~H~~M~~~v~v~~~~ 217 (228)
T MTH00140 192 FYGQCSEICGANHSFMPIVVEAVPLE 217 (228)
T ss_pred EEEECccccCcCcCCCeEEEEEECHH
Confidence 9999986543 477788778777654
No 85
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=68.68 E-value=14 Score=36.27 Aligned_cols=77 Identities=16% Similarity=0.153 Sum_probs=55.1
Q ss_pred eeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCcee
Q 007635 433 SLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGV 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~ 512 (595)
+.+.++.|+.|++.+...| -.|.|.+ -+.+ ..+|. -||-...+.|++|.||.
T Consensus 139 nel~lP~g~pV~~~ltS~D-ViHSF~V-------P~l~-----------------~K~Da---iPG~~n~~~~~~~~~G~ 190 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNS-VMNSFFI-------PQLG-----------------SQIYA---MAGMQTKLHLIANEPGV 190 (226)
T ss_pred ceEEEECCCEEEEEEEECc-hhhhhhh-------hhcC-----------------Ceeec---CCCceEEEEEEeCCCEE
Confidence 3467899999999998775 4465544 2221 33344 47788889999999999
Q ss_pred eeeeeccccc-eeccceeEEEEeCCC
Q 007635 513 WNLRVENLDR-WYLGQETYMKIVNPE 537 (595)
Q Consensus 513 W~~HCHil~h-~~~Gm~~~~~V~~~~ 537 (595)
+.-.|--.-- -|..|...+.|.+++
T Consensus 191 y~g~CaE~CG~~Ha~M~~~V~v~~~~ 216 (226)
T TIGR01433 191 YDGISANYSGPGFSGMKFKAIATDRA 216 (226)
T ss_pred EEEEchhhcCcCccCCeEEEEEECHH
Confidence 9999985433 477777777777654
No 86
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=65.68 E-value=89 Score=29.48 Aligned_cols=95 Identities=7% Similarity=-0.102 Sum_probs=54.3
Q ss_pred eeeecCCcEEEEEEecCCCCceeeeecCceEEEEeeccccc-CCC---CCCCCCcC--CCCcccEEEECCCcEEEEEEEe
Q 007635 434 LINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIW-TES---NRNSYNKW--DAISKCTTEVYPGAWTAILVSL 507 (595)
Q Consensus 434 v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~-~~~---~~~~~n~~--~p~~RDTv~v~p~g~~~Irf~a 507 (595)
.+-++.|-.|.++|.|.+..+|-+ -|+.-+.... .+. +.+..++. .+.--..=-+.+|....+-+..
T Consensus 86 tIyiPaGw~V~V~f~N~e~~pHnl-------~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~~ 158 (195)
T TIGR03094 86 TIYLPAGWNVYVTFTNYESLPHNL-------KLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWND 158 (195)
T ss_pred EEEEeCCCEEEEEEEcCCCCCccE-------EEecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEecc
Confidence 456788999999999998777644 4444321100 000 00001100 0000000011234455556666
Q ss_pred CCceeeeeeeccccceeccceeEEEEeC
Q 007635 508 DNVGVWNLRVENLDRWYLGQETYMKIVN 535 (595)
Q Consensus 508 dNpG~W~~HCHil~h~~~Gm~~~~~V~~ 535 (595)
--||.+.+=|-+.-|...||=..+.|-+
T Consensus 159 ~~~G~YwlvCgipGHAesGMw~~lIVSs 186 (195)
T TIGR03094 159 TSAGKYWLVCGITGHAESGMWAVVIVSS 186 (195)
T ss_pred CCCeeEEEEcccCChhhcCcEEEEEEec
Confidence 6899999999999999999887776653
No 87
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=64.33 E-value=68 Score=26.23 Aligned_cols=68 Identities=24% Similarity=0.325 Sum_probs=41.7
Q ss_pred EecCCCEE--EEEEEEcCCCceEEEEEeCccceeeeccCccccceeecEE-EEcCCcEEEEEEEcCC-CCCcceEEEEee
Q 007635 220 NVDPGKTY--RVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQNYTSF-EIHVGQSYSFLVTMDQ-NASSDYYIVASA 295 (595)
Q Consensus 220 ~v~~G~~~--rlRliN~~~~~~~~~~i~gh~~~vi~~DG~~~~p~~~~~l-~i~pG~R~dvlv~~~~-~~g~~y~i~~~~ 295 (595)
.+.+|+.+ .+.|-|.|....-.+.+. +-.||..+ ....+ .|.||+...+-+.... .+| .|.+++..
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G-~~~i~~~i 83 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPG-SYTIRVVI 83 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-C-EEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCC-eEEEEEEE
Confidence 45667765 678999988754444443 33455544 33444 7899999988887654 456 89888876
Q ss_pred ec
Q 007635 296 RF 297 (595)
Q Consensus 296 ~~ 297 (595)
+.
T Consensus 84 D~ 85 (101)
T PF07705_consen 84 DP 85 (101)
T ss_dssp ST
T ss_pred ee
Confidence 53
No 88
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=61.75 E-value=23 Score=34.61 Aligned_cols=78 Identities=19% Similarity=0.221 Sum_probs=55.6
Q ss_pred eeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCcee
Q 007635 433 SLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGV 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~ 512 (595)
+.+.++.|+.|++.+...| ..|.|.+ |..+--...-||-...+.|.++.||.
T Consensus 130 n~l~iP~g~~v~~~ltS~D-ViHsf~v---------------------------P~l~~k~daiPG~~~~~~~~~~~~G~ 181 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSAD-TMTSFWI---------------------------PQLGGQKYAMTGMTMNWYLQADQVGT 181 (217)
T ss_pred CcEEEECCCEEEEEEECCc-hhhhhhc---------------------------hhhCceeecCCCceEEEEEEeCCCEE
Confidence 3467899999999998775 4565544 22223333447888899999999999
Q ss_pred eeeeecccc-ceeccceeEEEEeCCCC
Q 007635 513 WNLRVENLD-RWYLGQETYMKIVNPEE 538 (595)
Q Consensus 513 W~~HCHil~-h~~~Gm~~~~~V~~~~~ 538 (595)
+--.|=-+- --|..|...+.|.++++
T Consensus 182 y~g~Cae~CG~~Hs~M~~~v~v~~~~~ 208 (217)
T TIGR01432 182 YRGRNANFNGEGFADQTFDVNAVSEKD 208 (217)
T ss_pred EEEEehhhcCccccCCeEEEEEeCHHH
Confidence 999997533 34777888888776643
No 89
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=59.00 E-value=1.6e+02 Score=29.04 Aligned_cols=77 Identities=12% Similarity=-0.120 Sum_probs=50.3
Q ss_pred CceEEecCCCEEEEEEEeCCCCCceeecCCCccCCCCCCCCCCCCCCccCCCCeEEEEEEecCceeeeEEeccc-hhhhc
Q 007635 60 GAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSL-NLQRV 138 (595)
Q Consensus 60 GP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~tY~f~~~~~~Gt~wYH~H~-~~q~~ 138 (595)
...+.+..|..|++.+++.. .| |+...+. -| -+.-+-||..-...|++ +++|+|+-.|.. -+..-
T Consensus 139 ~n~l~lP~~~~v~~~~ts~D----Vi--Hsf~ip~----~~---~k~d~~Pg~~~~~~~~~-~~~g~y~~~C~e~CG~~H 204 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSAD----VI--HSWTVPS----LG---VKVDAIPGRLNQLSFEP-KRPGVFYGQCSEICGANH 204 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCc----cc--cceeccc----cC---ceeECCCCcceeEEEEe-CCCEEEEEECccccCcCc
Confidence 46789999999999999862 23 4443321 11 12335688888888888 689999999873 12222
Q ss_pred cCccccEEEccC
Q 007635 139 SGGFGPVIINNR 150 (595)
Q Consensus 139 ~Gl~G~liV~~~ 150 (595)
..|.+.++|.++
T Consensus 205 ~~M~~~v~v~~~ 216 (228)
T MTH00140 205 SFMPIVVEAVPL 216 (228)
T ss_pred CCCeEEEEEECH
Confidence 346666766653
No 90
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=57.94 E-value=32 Score=33.94 Aligned_cols=77 Identities=13% Similarity=0.112 Sum_probs=55.3
Q ss_pred eeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCcee
Q 007635 433 SLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGV 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~ 512 (595)
+.+.++.|+.|++.+...|- . |.|+|-+.+ ...| +-||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DV-i-------Hsf~ip~~~-----------------~k~d---a~PG~~~~~~~~~~~~G~ 191 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAEDV-L-------HSWAVPALG-----------------VKMD---AVPGRLNQTAFIASRPGV 191 (230)
T ss_pred ceEEEecCcEEEEEEEeCcc-c-------cceeccccC-----------------Cccc---cCCCceEEEEEEeCCceE
Confidence 45778999999999988753 3 455554443 2233 347788888899999999
Q ss_pred eeeeecccc-ceeccceeEEEEeCCC
Q 007635 513 WNLRVENLD-RWYLGQETYMKIVNPE 537 (595)
Q Consensus 513 W~~HCHil~-h~~~Gm~~~~~V~~~~ 537 (595)
+...|.-+- ..|..|-..++|.+++
T Consensus 192 ~~g~C~e~CG~~H~~M~~~v~vv~~~ 217 (230)
T MTH00129 192 FYGQCSEICGANHSFMPIVVEAVPLE 217 (230)
T ss_pred EEEEChhhccccccCCcEEEEEECHH
Confidence 999998543 3477887777777554
No 91
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=54.12 E-value=51 Score=32.75 Aligned_cols=77 Identities=10% Similarity=0.133 Sum_probs=55.6
Q ss_pred eeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCcee
Q 007635 433 SLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGV 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~ 512 (595)
+.+.++.|+.|++.+... +..|.|.+-. .+ ..+|. -||-...+.|.++.||.
T Consensus 151 n~lvlP~~~~v~~~~tS~-DViHsf~iP~-------lg-----------------vK~Da---iPG~~n~~~~~~~~~G~ 202 (240)
T MTH00023 151 NRLVVPINTHVRILVTGA-DVLHSFAVPS-------LG-----------------LKIDA---VPGRLNQTGFFIKRPGV 202 (240)
T ss_pred ceEEEecCCEEEEEEEcC-Ccccceeecc-------cC-----------------ceeec---CCCcceeEEEEcCCCEE
Confidence 457789999999999876 4667776632 11 23333 46777788899999999
Q ss_pred eeeeeccccc-eeccceeEEEEeCCC
Q 007635 513 WNLRVENLDR-WYLGQETYMKIVNPE 537 (595)
Q Consensus 513 W~~HCHil~h-~~~Gm~~~~~V~~~~ 537 (595)
+.-.|.-+-. -|.-|-..++|.+++
T Consensus 203 y~g~C~e~CG~~Hs~M~~~v~vv~~~ 228 (240)
T MTH00023 203 FYGQCSEICGANHSFMPIVIEAVSLD 228 (240)
T ss_pred EEEEchhhcCcCccCCeEEEEEECHH
Confidence 9999986443 477777777777654
No 92
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=51.21 E-value=57 Score=32.12 Aligned_cols=77 Identities=12% Similarity=0.168 Sum_probs=54.8
Q ss_pred eeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCcee
Q 007635 433 SLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGV 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~ 512 (595)
+.+.++.|+.|++.+.+.| ..|.|.+- +. +--...-||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-ViHsf~vP-------~~--------------------~~k~daiPG~~~~~~~~~~~~G~ 191 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAAD-VIHSWTVP-------SL--------------------GVKVDAVPGRLNQIGFTITRPGV 191 (228)
T ss_pred ceEEEecCCEEEEEEEeCC-cccccccc-------cc--------------------CcceecCCCceEEEEEEeCCCEE
Confidence 4567899999999999864 45655553 22 12234457778888899999999
Q ss_pred eeeeecccc-ceeccceeEEEEeCCC
Q 007635 513 WNLRVENLD-RWYLGQETYMKIVNPE 537 (595)
Q Consensus 513 W~~HCHil~-h~~~Gm~~~~~V~~~~ 537 (595)
+..-|.-+- ..|.-|-..+.|.+++
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~~ 217 (228)
T MTH00008 192 FYGQCSEICGANHSFMPIVLEAVDTK 217 (228)
T ss_pred EEEEChhhcCcCccCceeEEEEECHH
Confidence 999998543 3477777777777554
No 93
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=50.82 E-value=71 Score=24.67 Aligned_cols=20 Identities=15% Similarity=0.200 Sum_probs=16.8
Q ss_pred eEEEecCCCEEEEEEEEcCC
Q 007635 217 ETINVDPGKTYRVRVHNVGT 236 (595)
Q Consensus 217 ~~~~v~~G~~~rlRliN~~~ 236 (595)
-.++++.|+++++.+-+.+.
T Consensus 5 y~f~v~ag~~l~i~l~~~~~ 24 (70)
T PF04151_consen 5 YSFTVPAGGTLTIDLSGGSG 24 (70)
T ss_dssp EEEEESTTEEEEEEECETTS
T ss_pred EEEEEcCCCEEEEEEcCCCC
Confidence 57899999999999877665
No 94
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=49.07 E-value=76 Score=25.13 Aligned_cols=67 Identities=21% Similarity=0.343 Sum_probs=30.7
Q ss_pred ecCCCE--EEEEEEEcCCCc--eEEEEEeCccceeeeccCccccceeecEEEEcCCcEEEEEEEcC--C--CCCcceEEE
Q 007635 221 VDPGKT--YRVRVHNVGTST--SLNFRIQNHNLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMD--Q--NASSDYYIV 292 (595)
Q Consensus 221 v~~G~~--~rlRliN~~~~~--~~~~~i~gh~~~vi~~DG~~~~p~~~~~l~i~pG~R~dvlv~~~--~--~~g~~y~i~ 292 (595)
+.+|+. +++.+-|.|... ...+++..=.=|-+..+ +.... .|.||+...+-++.. . .+| +|.|.
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~-----~~~~~--~l~pG~s~~~~~~V~vp~~a~~G-~y~v~ 72 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSAS-----PASVP--SLPPGESVTVTFTVTVPADAAPG-TYTVT 72 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---E-----EEEE----B-TTSEEEEEEEEEE-TT--SE-EEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCC-----ccccc--cCCCCCEEEEEEEEECCCCCCCc-eEEEE
Confidence 356765 478889988643 34455443211112222 32333 789998776666543 2 356 89887
Q ss_pred Eee
Q 007635 293 ASA 295 (595)
Q Consensus 293 ~~~ 295 (595)
+..
T Consensus 73 ~~a 75 (78)
T PF10633_consen 73 VTA 75 (78)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 95
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=48.39 E-value=24 Score=31.37 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=15.8
Q ss_pred CCCCCCCCCccCCCCeEEEE
Q 007635 98 QDGVQGTNCPIPSQWNWTYQ 117 (595)
Q Consensus 98 ~DGv~~tq~~I~PG~~~tY~ 117 (595)
-+||-|.|.-|.||++|.|.
T Consensus 66 G~GVVG~qP~L~PGe~F~Y~ 85 (127)
T PRK05461 66 GEGVVGEQPVLAPGESFEYT 85 (127)
T ss_pred CCceecCCceECCCCCeEEe
Confidence 45666777779999998887
No 96
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=47.56 E-value=87 Score=25.61 Aligned_cols=57 Identities=9% Similarity=0.070 Sum_probs=38.0
Q ss_pred CCceEEec---CCCEEEEEEEeCCCCCceeecCCCccCCCCCCCCCCCCCCccCCCCeEEEEEEec
Q 007635 59 PGAVLNAT---TNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVK 121 (595)
Q Consensus 59 PGP~i~v~---~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~tY~f~~~ 121 (595)
+.|.+.++ ....|+|++.|.-..+..+....... ..+.+ .+..|+||++.+..|.+.
T Consensus 7 ~~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y-----~~~~~-~~~~v~ag~~~~~~w~l~ 66 (89)
T PF05506_consen 7 YAPEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAY-----GGGGP-WTYTVAAGQTVSLTWPLA 66 (89)
T ss_pred CCCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCc-----CCCCC-EEEEECCCCEEEEEEeec
Confidence 35555554 23589999999987777766555321 11111 346699999999999883
No 97
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=46.62 E-value=42 Score=27.86 Aligned_cols=71 Identities=14% Similarity=0.136 Sum_probs=39.7
Q ss_pred ecCCCEEEEEEE--EcCCCceEEEEEeCccceeeeccCccccceeecEE-EEcCCcEEEEEEEcCCCC--CcceEEEEee
Q 007635 221 VDPGKTYRVRVH--NVGTSTSLNFRIQNHNLLLVETEGHYTSQQNYTSF-EIHVGQSYSFLVTMDQNA--SSDYYIVASA 295 (595)
Q Consensus 221 v~~G~~~rlRli--N~~~~~~~~~~i~gh~~~vi~~DG~~~~p~~~~~l-~i~pG~R~dvlv~~~~~~--g~~y~i~~~~ 295 (595)
-+|||++.+|++ +.... .....-....++|..-+|..+.. ... .......++.-+..++.+ | .|.|++..
T Consensus 11 YrPGetV~~~~~~~~~~~~-~~~~~~~~~~v~i~dp~g~~v~~---~~~~~~~~~G~~~~~~~lp~~~~~G-~y~i~~~~ 85 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDND-FKPPANSPVTVTIKDPSGNEVFR---WSVNTTNENGIFSGSFQLPDDAPLG-TYTIRVKT 85 (99)
T ss_dssp E-TTSEEEEEEEEEEECTT-CSCESSEEEEEEEEETTSEEEEE---EEEEETTCTTEEEEEEE--SS---E-EEEEEEEE
T ss_pred cCCCCEEEEEEEEeccccc-cccccCCceEEEEECCCCCEEEE---EEeeeeCCCCEEEEEEECCCCCCCE-eEEEEEEE
Confidence 479999999999 66521 00000011235566666655422 122 335677888888877543 6 89998876
Q ss_pred e
Q 007635 296 R 296 (595)
Q Consensus 296 ~ 296 (595)
.
T Consensus 86 ~ 86 (99)
T PF01835_consen 86 D 86 (99)
T ss_dssp T
T ss_pred c
Confidence 4
No 98
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=46.53 E-value=1.9e+02 Score=24.87 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=14.4
Q ss_pred EEEEEEcCCC-ceEEEEEeCcc
Q 007635 228 RVRVHNVGTS-TSLNFRIQNHN 248 (595)
Q Consensus 228 rlRliN~~~~-~~~~~~i~gh~ 248 (595)
++|++|++.. ..+.+.++|..
T Consensus 3 ~Vr~~hasp~~~~vdv~~dg~~ 24 (122)
T PF14344_consen 3 RVRFIHASPDAPAVDVYVDGTK 24 (122)
T ss_pred EEEEEEcCCCCccEEEEECCEE
Confidence 6888888875 46666666544
No 99
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=46.20 E-value=76 Score=31.27 Aligned_cols=77 Identities=10% Similarity=0.152 Sum_probs=54.1
Q ss_pred eeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCcee
Q 007635 433 SLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGV 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~ 512 (595)
+.+.++.|+.+++.+...| ..|.|.+-. .+ ...|. -||-...+.+.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-ViHsf~iP~-------lg-----------------~k~da---iPG~~~~~~~~~~~~G~ 191 (229)
T MTH00038 140 NRLVLPYQTPIRVLVSSAD-VLHSWAVPS-------LG-----------------VKMDA---VPGRLNQTTFFISRTGL 191 (229)
T ss_pred ceEEEecCeEEEEEEEECC-ccccccccc-------cC-----------------ceeec---CCCceEEEEEEcCCCEE
Confidence 4577899999999988764 567666532 11 23343 47778888999999999
Q ss_pred eeeeeccccc-eeccceeEEEEeCCC
Q 007635 513 WNLRVENLDR-WYLGQETYMKIVNPE 537 (595)
Q Consensus 513 W~~HCHil~h-~~~Gm~~~~~V~~~~ 537 (595)
+...|--+-. .|.-|-..+.|.+++
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~~ 217 (229)
T MTH00038 192 FYGQCSEICGANHSFMPIVIESVPFN 217 (229)
T ss_pred EEEEcccccCcCcCCCeEEEEEeCHH
Confidence 9999985443 366666667666543
No 100
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=46.09 E-value=79 Score=31.14 Aligned_cols=77 Identities=10% Similarity=0.128 Sum_probs=53.7
Q ss_pred eeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCcee
Q 007635 433 SLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGV 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~ 512 (595)
+.+.++.|+.|++.+...| ..|. |+|-+.+ ...| .-||....+.+.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-ViHs-------f~ip~lg-----------------~k~d---aiPG~~~~~~~~~~~~G~ 191 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSED-VLHS-------WAVPSLG-----------------LKTD---AIPGRLNQTTLMSTRPGL 191 (227)
T ss_pred ceEEecCCCEEEEEEEECc-cccc-------ccccccc-----------------ccee---cCCCceEEEEEecCCcEE
Confidence 4577899999999998775 3444 4443332 2333 347778888999999999
Q ss_pred eeeeeccccc-eeccceeEEEEeCCC
Q 007635 513 WNLRVENLDR-WYLGQETYMKIVNPE 537 (595)
Q Consensus 513 W~~HCHil~h-~~~Gm~~~~~V~~~~ 537 (595)
+..-|.-+-. .|.-|-..+.|.+++
T Consensus 192 ~~g~Cse~CG~~H~~M~~~v~v~~~~ 217 (227)
T MTH00098 192 YYGQCSEICGSNHSFMPIVLELVPLK 217 (227)
T ss_pred EEEECccccCcCcCCceEEEEEeCHH
Confidence 9999985443 467777777776543
No 101
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=45.64 E-value=18 Score=30.46 Aligned_cols=10 Identities=60% Similarity=0.464 Sum_probs=5.7
Q ss_pred CcchhhhHHH
Q 007635 1 MASLRFLSLF 10 (595)
Q Consensus 1 ~~~~~~~~~~ 10 (595)
|.|..++|+.
T Consensus 1 MaSK~~llL~ 10 (95)
T PF07172_consen 1 MASKAFLLLG 10 (95)
T ss_pred CchhHHHHHH
Confidence 7765555444
No 102
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=45.48 E-value=89 Score=33.21 Aligned_cols=64 Identities=17% Similarity=0.234 Sum_probs=43.1
Q ss_pred CcceEEEecCCCEEEEEEEEcCCCceEEEEEeCccceeeeccCccccceeecEEEEcCCcEEEEEEEcCCCCCcceEEEE
Q 007635 214 IEYETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVA 293 (595)
Q Consensus 214 ~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi~~DG~~~~p~~~~~l~i~pG~R~dvlv~~~~~~g~~y~i~~ 293 (595)
|....+++++|+ ++|.+.|.+... +.|.++. |..+. -..=.|+||.+..+.+++. +| .|.+.+
T Consensus 41 c~p~~~tVpAG~-~~f~V~N~~~~~--------~Efe~~~--~~~vv---~e~EnIaPG~s~~l~~~L~--pG-tY~~~C 103 (375)
T PRK10378 41 CEPMTLTVNAGK-TQFIIQNHSQKA--------LEWEILK--GVMVV---EERENIAPGFSQKMTANLQ--PG-EYDMTC 103 (375)
T ss_pred cccCceeeCCCC-EEEEEEeCCCCc--------ceEEeec--ccccc---ccccccCCCCceEEEEecC--Cc-eEEeec
Confidence 346789999996 999999998764 3344432 22110 0112789998888877773 68 999977
Q ss_pred e
Q 007635 294 S 294 (595)
Q Consensus 294 ~ 294 (595)
.
T Consensus 104 ~ 104 (375)
T PRK10378 104 G 104 (375)
T ss_pred C
Confidence 3
No 103
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=45.37 E-value=1.1e+02 Score=27.10 Aligned_cols=64 Identities=9% Similarity=0.168 Sum_probs=42.9
Q ss_pred EEEecCCCEEEEEEEEcCCCceEEEEEeCccceeeeccCccc-------cceeecEEEEcCCcEEEEEEEcCCCCC
Q 007635 218 TINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYT-------SQQNYTSFEIHVGQSYSFLVTMDQNAS 286 (595)
Q Consensus 218 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi~~DG~~~-------~p~~~~~l~i~pG~R~dvlv~~~~~~g 286 (595)
.|++..-.+|+|++-.-+ ..+|.|+|..+ |+.++..- ......++.+..|++|.|-|...+..+
T Consensus 53 ~~~~~~~G~y~f~~~~~d---~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~~~ 123 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDD---GARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNRGG 123 (145)
T ss_dssp EEEESSSEEEEEEEEESS---EEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEECSC
T ss_pred EEecccCceEEEEEEecc---cEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEECCC
Confidence 467766677999998433 46778888764 55555433 345567888999999999998765433
No 104
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=45.17 E-value=89 Score=30.84 Aligned_cols=77 Identities=12% Similarity=0.166 Sum_probs=53.3
Q ss_pred eeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCcee
Q 007635 433 SLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGV 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~ 512 (595)
+.+.++.|+.|++.+...| ..|. |+|-+.+ .. ...-||....+.+.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-ViHs-------f~iP~lg-----------------~k---~daiPG~~~~~~~~~~~~G~ 191 (230)
T MTH00185 140 HRMVVPMESPIRVLITAED-VLHS-------WTVPALG-----------------VK---MDAVPGRLNQATFIISRPGL 191 (230)
T ss_pred CeEEEecCCEEEEEEEcCc-cccc-------ccccccC-----------------ce---eEecCCceEEEEEEeCCcEE
Confidence 4567899999999998875 3444 4443332 22 33447777888889999999
Q ss_pred eeeeeccccc-eeccceeEEEEeCCC
Q 007635 513 WNLRVENLDR-WYLGQETYMKIVNPE 537 (595)
Q Consensus 513 W~~HCHil~h-~~~Gm~~~~~V~~~~ 537 (595)
+.--|.-+-. .|.-|-..+.|..++
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~~ 217 (230)
T MTH00185 192 YYGQCSEICGANHSFMPIVVEAVPLE 217 (230)
T ss_pred EEEEchhhcCcCcCCCeEEEEEECHH
Confidence 9999986443 467777777766543
No 105
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=43.08 E-value=36 Score=31.14 Aligned_cols=67 Identities=13% Similarity=0.285 Sum_probs=39.7
Q ss_pred EEEEEEEEEEEeCCCCeeEEEEEECCCC-CCceEEecCCCEEEEEEEeCCCCCceeecCCCccCCCCCCCCCC
Q 007635 31 IFYDFKVSYITASPLGVPQQVIAINGKF-PGAVLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQ 102 (595)
Q Consensus 31 ~~~~~~v~~~~~~~dG~~~~~~~~Ng~~-PGP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~ 102 (595)
..|-++.++...... ...+.+-+.|.+ +|..-+. .|..++.+++-. .....++.+|+ .+..+.+|..
T Consensus 34 ~~yf~tpse~~~~~~-~~g~~vrvgG~V~~gSi~~~-~~~~~~F~ltD~-~~~i~V~Y~G~--lPd~F~eg~~ 101 (148)
T PRK13254 34 IVFFYTPSEVAEGEA-PAGRRFRLGGLVEKGSVQRG-DGLTVRFVVTDG-NATVPVVYTGI--LPDLFREGQG 101 (148)
T ss_pred CceeeCHHHHhcCCc-cCCCeEEEeEEEecCcEEeC-CCCEEEEEEEeC-CeEEEEEECCC--CCccccCCCE
Confidence 456666665543322 222334444544 4544343 778888888776 45667888998 4556777754
No 106
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=40.79 E-value=73 Score=27.18 Aligned_cols=69 Identities=10% Similarity=0.135 Sum_probs=42.7
Q ss_pred EEEEEeCCCCCceeecCCCccCCCCCCCCCCCCCCccCCCCeEEEEEEecCceeeeEEeccchhhhccCccccEEEcc
Q 007635 72 VINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSLNLQRVSGGFGPVIINN 149 (595)
Q Consensus 72 ~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~tY~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~ 149 (595)
.|+++|.|.....|..|=-. ...| .| ...+.||+++..+|.. +--|+--|.|+... ....-..-+.|..
T Consensus 2 ~V~I~N~L~~~~~L~vhC~S----~d~D--lg-~~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~-~~~~~~~~f~vy~ 70 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCKS----KDDD--LG-WHVLKPGQSYSFSFRD-NFFGTTLFWCHFRW-PGGKYHHSFDVYR 70 (110)
T ss_pred EEEEEECCCCCCeEEEEeeC----CCcc--CC-CEECCCCCEEEEEEec-CcCCceeEEEEEEE-CCccEEEEEEEEe
Confidence 58899999655555554431 1112 12 2348999999999986 34577777899766 1111355666654
No 107
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=40.68 E-value=1.1e+02 Score=30.23 Aligned_cols=77 Identities=13% Similarity=0.136 Sum_probs=54.0
Q ss_pred eeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCcee
Q 007635 433 SLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGV 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~ 512 (595)
+.+.++.|+.|++.+...| ..| +|+|-+.+ ..+ ..-||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-ViH-------sf~vP~lg-----------------~K~---DavPG~~n~~~~~~~~~G~ 191 (227)
T MTH00117 140 HRMVIPMESPIRILITAED-VLH-------SWAVPSLG-----------------VKT---DAVPGRLNQTSFITTRPGV 191 (227)
T ss_pred ceEEEecCceEEEEEEecc-hhh-------cccccccC-----------------cee---EecCCceEEEEEEEcccce
Confidence 4577899999999998875 344 44443332 233 3457888888999999999
Q ss_pred eeeeeccccc-eeccceeEEEEeCCC
Q 007635 513 WNLRVENLDR-WYLGQETYMKIVNPE 537 (595)
Q Consensus 513 W~~HCHil~h-~~~Gm~~~~~V~~~~ 537 (595)
+.--|--+-. -|.-|-..+.|.+++
T Consensus 192 y~g~CsE~CG~~Hs~M~~~v~vv~~~ 217 (227)
T MTH00117 192 FYGQCSEICGANHSFMPIVVESVPLK 217 (227)
T ss_pred EEEEeccccccCccCCeEEEEEcCHH
Confidence 9999985443 467777777666543
No 108
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=40.60 E-value=1.9e+02 Score=25.28 Aligned_cols=62 Identities=10% Similarity=0.217 Sum_probs=37.1
Q ss_pred EEEecCCCEEEEEEEEcCCCceEEEEEeCccceeeeccCccc-cceeecEEEEcCCcEEEEEEEcCCC
Q 007635 218 TINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYT-SQQNYTSFEIHVGQSYSFLVTMDQN 284 (595)
Q Consensus 218 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi~~DG~~~-~p~~~~~l~i~pG~R~dvlv~~~~~ 284 (595)
.|++.....|+|++...+ ...+.|+|. .|++.++..- .+.....+.|..|++|.|.|...+.
T Consensus 51 ~i~~~~~G~y~f~~~~~~---~~~l~Idg~--~vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~ 113 (136)
T smart00758 51 YLKPPEDGEYTFSITSDD---GARLWIDGK--LVIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEA 113 (136)
T ss_pred EEECCCCccEEEEEEcCC---cEEEEECCc--EEEcCCccCCCccccceeEEEeCCcEEEEEEEEEeC
Confidence 455655556999985433 467788875 3444443322 1223446777888888877766543
No 109
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=38.09 E-value=1.2e+02 Score=29.96 Aligned_cols=77 Identities=10% Similarity=0.160 Sum_probs=54.1
Q ss_pred eeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCcee
Q 007635 433 SLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGV 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~ 512 (595)
+.+.++.|+.|++.+.+.| ..|.|.+ -+-+ .. +..-||....+.|.++.||.
T Consensus 144 n~lvlP~~~~v~~~itS~D-ViHsf~v-------p~lg-----------------~k---~daiPG~~~~~~~~~~~~G~ 195 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAAD-VLHSFAV-------PSLS-----------------VK---IDAVPGRLNQTSFFIKRPGV 195 (234)
T ss_pred eEEEEecCcEEEEEEEeCc-hhccccc-------cccC-----------------ce---eEccCCceEeEEEEeCCCEE
Confidence 5577899999999999874 5565554 2221 22 23446777788899999999
Q ss_pred eeeeecccc-ceeccceeEEEEeCCC
Q 007635 513 WNLRVENLD-RWYLGQETYMKIVNPE 537 (595)
Q Consensus 513 W~~HCHil~-h~~~Gm~~~~~V~~~~ 537 (595)
+---|.-+- ..|.-|-..+.|.+++
T Consensus 196 y~g~Cse~CG~~Hs~M~i~v~vv~~~ 221 (234)
T MTH00051 196 FYGQCSEICGANHSFMPIVIEGVSLD 221 (234)
T ss_pred EEEEChhhcCcccccCeeEEEEECHH
Confidence 999998533 3467777777777554
No 110
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=38.03 E-value=1.1e+02 Score=30.10 Aligned_cols=77 Identities=12% Similarity=0.118 Sum_probs=53.5
Q ss_pred eeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCcee
Q 007635 433 SLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGV 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~ 512 (595)
+.+.++.|+.|++.+...| ..|.|. |=+-+ ...| .-||....+.+.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~D-ViHsf~-------vP~lg-----------------~k~d---a~PG~~n~~~~~~~~~G~ 191 (228)
T MTH00076 140 NRMVVPMESPIRMLITAED-VLHSWA-------VPSLG-----------------IKTD---AIPGRLNQTSFIASRPGV 191 (228)
T ss_pred ceEEEecCCEEEEEEEecc-cccccc-------ccccC-----------------ceEE---ccCCcceeEEEEeCCcEE
Confidence 4577899999999998775 445444 42222 2223 346777788899999999
Q ss_pred eeeeeccccc-eeccceeEEEEeCCC
Q 007635 513 WNLRVENLDR-WYLGQETYMKIVNPE 537 (595)
Q Consensus 513 W~~HCHil~h-~~~Gm~~~~~V~~~~ 537 (595)
+.--|.-+-. -|..|-..+.|.+++
T Consensus 192 ~~g~C~e~CG~~Hs~M~~~v~vv~~~ 217 (228)
T MTH00076 192 YYGQCSEICGANHSFMPIVVEATPLN 217 (228)
T ss_pred EEEEChhhcCccccCCceEEEEeCHH
Confidence 9999985433 477777777776543
No 111
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=37.77 E-value=2.2e+02 Score=23.53 Aligned_cols=64 Identities=27% Similarity=0.304 Sum_probs=37.2
Q ss_pred EecCCCEE--EEEEEEcCCCceEEEEEeCccceeeeccCccccceeecEEEEcCCcEEEEEEEcC-C-CCCcceEE
Q 007635 220 NVDPGKTY--RVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMD-Q-NASSDYYI 291 (595)
Q Consensus 220 ~v~~G~~~--rlRliN~~~~~~~~~~i~gh~~~vi~~DG~~~~p~~~~~l~i~pG~R~dvlv~~~-~-~~g~~y~i 291 (595)
.+..|++| .+.|.|.|.. ..+|++.-.. ....... .....-.|.||+..++.|++. . ..| .|.-
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~-p~~f~v~~~~-----~~~~~~~-v~~~~g~l~PG~~~~~~V~~~~~~~~g-~~~~ 82 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSI-PARFRVRQPE-----SLSSFFS-VEPPSGFLAPGESVELEVTFSPTKPLG-DYEG 82 (102)
T ss_pred EEccCCEEEEEEEEEECCCC-CEEEEEEeCC-----cCCCCEE-EECCCCEECCCCEEEEEEEEEeCCCCc-eEEE
Confidence 56778877 6999999986 3555553211 0011111 011223699999999999887 3 334 5543
No 112
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=37.69 E-value=35 Score=29.64 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=32.8
Q ss_pred EEEEeCCCCC---ceeecCCCccCC---CCCCCCCCCCCCccCCCCeEEEEEEec--Cceeee
Q 007635 73 INVQNDLDES---LLMTWPGIQMRR---NSWQDGVQGTNCPIPSQWNWTYQFQVK--DQIGSF 127 (595)
Q Consensus 73 v~v~N~l~~~---~siH~HG~~~~~---~~~~DGv~~tq~~I~PG~~~tY~f~~~--~~~Gt~ 127 (595)
|++.|....+ .+=|||=-...+ .-.-+||-|.|.-|+||++|+|.=-.+ ...|+-
T Consensus 34 itI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVGeQP~l~PG~~y~YtSg~~l~Tp~G~M 96 (126)
T COG2967 34 VTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVGEQPLLAPGEEYQYTSGCPLDTPSGTM 96 (126)
T ss_pred EEEecCCCccceeeeeEEEEecCCCcEEEEEcCceeccccccCCCCceEEcCCcCccCCcceE
Confidence 5566665443 345886432211 112457777888999999999984333 335553
No 113
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=37.26 E-value=78 Score=26.29 Aligned_cols=49 Identities=16% Similarity=0.449 Sum_probs=25.4
Q ss_pred EEEEEEEEcCCCceEEEEEeCccceeeeccCcccc---c-eeecEEEEcCCcEEEE
Q 007635 226 TYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTS---Q-QNYTSFEIHVGQSYSF 277 (595)
Q Consensus 226 ~~rlRliN~~~~~~~~~~i~gh~~~vi~~DG~~~~---p-~~~~~l~i~pG~R~dv 277 (595)
.|++||-|.+... +.|-...+.|...||...+ + +.-..=.|.|||.+..
T Consensus 15 ~Y~I~I~N~~~~~---vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDES---VQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCCC---EEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 4899999998872 3444555555555553221 1 1113446788886643
No 114
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=36.54 E-value=82 Score=32.63 Aligned_cols=74 Identities=12% Similarity=0.060 Sum_probs=52.8
Q ss_pred eeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCcee
Q 007635 433 SLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGV 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~ 512 (595)
+.+.++.|+.|++.+...| ..|.|.+ =+ .+--+..-||-...+.|.+|.||.
T Consensus 151 NeL~iP~g~pV~f~lTS~D-ViHSF~I-------P~--------------------Lg~K~damPG~~n~l~~~a~~~G~ 202 (315)
T PRK10525 151 NEIAFPANVPVYFKVTSNS-VMNSFFI-------PR--------------------LGSQIYAMAGMQTRLHLIANEPGT 202 (315)
T ss_pred ccEEEecCCEEEEEEEEch-hhhhhhh-------hh--------------------hCCeeecCCCceeEEEEEcCCCEE
Confidence 3467899999999998775 3465544 22 223334457888899999999999
Q ss_pred eeeeecccc-ceeccceeEEEEe
Q 007635 513 WNLRVENLD-RWYLGQETYMKIV 534 (595)
Q Consensus 513 W~~HCHil~-h~~~Gm~~~~~V~ 534 (595)
+.-.|--.- .-|..|...+.+.
T Consensus 203 Y~G~CaEyCG~gHs~M~f~v~v~ 225 (315)
T PRK10525 203 YDGISASYSGPGFSGMKFKAIAT 225 (315)
T ss_pred EEEEChhhcCccccCCeEEEEEE
Confidence 999998644 3466777777665
No 115
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=35.62 E-value=22 Score=37.11 Aligned_cols=54 Identities=20% Similarity=0.438 Sum_probs=28.4
Q ss_pred CCCCCCCC-CCCccCCCCeEEEEEEec-CceeeeEEeccchhhhccCcccc---EEEcc
Q 007635 96 SWQDGVQG-TNCPIPSQWNWTYQFQVK-DQIGSFFYFPSLNLQRVSGGFGP---VIINN 149 (595)
Q Consensus 96 ~~~DGv~~-tq~~I~PG~~~tY~f~~~-~~~Gt~wYH~H~~~q~~~Gl~G~---liV~~ 149 (595)
.|+.|.|. ....|..|+++.|+..++ -.+|+|--|.-.+.+-...+.|+ +.|++
T Consensus 70 ~~ing~~~p~S~~le~G~~y~fki~lkar~pG~~hvh~~~nv~~~Gp~~Gpg~~v~i~g 128 (381)
T PF04744_consen 70 RWINGQPVPRSVSLELGGTYEFKIVLKARRPGTWHVHPMLNVEDAGPIVGPGQWVTIEG 128 (381)
T ss_dssp EEETTEE-SS-B---TT-EEEEEEEEEE-S-EEEEEEEEEEETTTEEEEEEEEEEEEES
T ss_pred eeecCccccceEEeecCCeeeEEEEEecccCccccceeeEeeccCCCCcCCceEEEEec
Confidence 45566665 457799999988887765 45899854444444444445555 44554
No 116
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=35.48 E-value=1.1e+02 Score=26.72 Aligned_cols=62 Identities=11% Similarity=0.273 Sum_probs=34.4
Q ss_pred CceEEecCCCEEEEEEEeCCCC---CceeecC----CCccC-CCCCCCCCCCCCCccCCCCeEEEEEEec
Q 007635 60 GAVLNATTNNNIVINVQNDLDE---SLLMTWP----GIQMR-RNSWQDGVQGTNCPIPSQWNWTYQFQVK 121 (595)
Q Consensus 60 GP~i~v~~Gd~v~v~v~N~l~~---~~siH~H----G~~~~-~~~~~DGv~~tq~~I~PG~~~tY~f~~~ 121 (595)
+..=.++.|..+.+.+.=..++ ......| |+... ..+..||=-...||+.+|+.++|.+..+
T Consensus 19 ~~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~l~CPl~~G~~~~y~~~~~ 88 (120)
T cd00918 19 GDYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKYVKCPIKKGQHYDIKYTWN 88 (120)
T ss_pred CCCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCcccEeCCCcCCcEEEEEEeee
Confidence 4455667777776665522221 1223333 43322 1122444212469999999999998775
No 117
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=35.26 E-value=4.1e+02 Score=25.44 Aligned_cols=76 Identities=12% Similarity=-0.094 Sum_probs=48.1
Q ss_pred eEEecCCCEEEEEEEeCCCCCceeecCCCccCCCCCCCCCCCCCCccCCCCeEEEEEEecCceeeeEEeccc-hhhhccC
Q 007635 62 VLNATTNNNIVINVQNDLDESLLMTWPGIQMRRNSWQDGVQGTNCPIPSQWNWTYQFQVKDQIGSFFYFPSL-NLQRVSG 140 (595)
Q Consensus 62 ~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~tY~f~~~~~~Gt~wYH~H~-~~q~~~G 140 (595)
.+.+..|..|+++++=. +. + |+...+.- +-+.-.-||..-...|++ +++|+|.-.|.. -+..-..
T Consensus 117 ~l~lp~g~~v~~~ltS~-DV---i--Hsf~vp~l-------~~k~d~~PG~~~~~~~~~-~~~G~y~g~C~e~CG~~H~~ 182 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSS-DV---I--HSFSVPDL-------NLKMDAIPGRINHLFFCP-DRHGVFVGYCSELCGVGHSY 182 (194)
T ss_pred eEEEeCCCEEEeeeecC-cc---c--cceecccc-------CceeecCCCceEEEEEEc-CCCEEEEEEeehhhCcCccc
Confidence 47788888888887755 22 3 33322210 112224588988888887 689999999983 2222345
Q ss_pred ccccEEEccCC
Q 007635 141 GFGPVIINNRK 151 (595)
Q Consensus 141 l~G~liV~~~~ 151 (595)
|.+-+.|.+++
T Consensus 183 M~~~v~v~~~~ 193 (194)
T MTH00047 183 MPIVIEVVDVD 193 (194)
T ss_pred CcEEEEEEcCC
Confidence 77888877653
No 118
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=34.79 E-value=1.5e+02 Score=29.27 Aligned_cols=77 Identities=10% Similarity=0.142 Sum_probs=54.3
Q ss_pred eeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCcee
Q 007635 433 SLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGV 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~ 512 (595)
+.+.++.|+.|++.+...| ..|.|-+- +.+ ..+|. -||-...+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~D-ViHsf~vp-------~l~-----------------~k~da---vPG~~~~~~~~~~~~G~ 191 (227)
T MTH00154 140 NRLVLPMNTQIRILITAAD-VIHSWTVP-------SLG-----------------VKVDA---VPGRLNQLNFLINRPGL 191 (227)
T ss_pred ceEEEecCCEEEEEEEcCc-hhhheecc-------ccC-----------------Ceeec---CCCceEEEEEEEcCceE
Confidence 4577899999999998764 45665552 221 23344 47778888999999999
Q ss_pred eeeeecccc-ceeccceeEEEEeCCC
Q 007635 513 WNLRVENLD-RWYLGQETYMKIVNPE 537 (595)
Q Consensus 513 W~~HCHil~-h~~~Gm~~~~~V~~~~ 537 (595)
+.--|--+- .-|.-|-..+.|.+++
T Consensus 192 y~g~Cse~CG~~H~~M~~~v~vv~~~ 217 (227)
T MTH00154 192 FFGQCSEICGANHSFMPIVIESVSVN 217 (227)
T ss_pred EEEEeechhCcCccCCeEEEEEeCHH
Confidence 999998543 3466777777776543
No 119
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=34.64 E-value=2.2e+02 Score=32.19 Aligned_cols=35 Identities=14% Similarity=0.057 Sum_probs=22.1
Q ss_pred CCcCCCCcccEEEECCC----cEEEEEEEeCCceeeeeeecc
Q 007635 482 YNKWDAISKCTTEVYPG----AWTAILVSLDNVGVWNLRVEN 519 (595)
Q Consensus 482 ~n~~~p~~RDTv~v~p~----g~~~Irf~adNpG~W~~HCHi 519 (595)
.+..||.-|+ |.||=+ ..+.|||. ..|.|||-..+
T Consensus 317 ~~~~n~~~R~-vrvPl~nR~ar~~k~~~~--F~~dWlf~sEv 355 (807)
T KOG1094|consen 317 GDLGNPRARA-VRVPLHNRVARFLKIRFL--FAGDWLFFSEV 355 (807)
T ss_pred cccCCCccce-EEeeccchhhheeEEEEE--cCCceEEEEEE
Confidence 4566777774 466633 34445554 55669999888
No 120
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=33.76 E-value=1.2e+02 Score=29.67 Aligned_cols=77 Identities=10% Similarity=0.120 Sum_probs=54.6
Q ss_pred eeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCcee
Q 007635 433 SLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGV 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~ 512 (595)
+.+.++.|+.|++.+...| ..|.|.+- +.+ ...|. -||-...+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~D-ViHsf~vP-------~lg-----------------~k~da---iPG~~n~~~~~~~~~G~ 191 (225)
T MTH00168 140 NRLVLPMDSKIRVLVTSAD-VLHSWTLP-------SLG-----------------LKMDA---VPGRLNQLAFLSSRPGS 191 (225)
T ss_pred ceEEEecCCEEEEEEEeCC-hhhccccc-------ccc-----------------ccccC---CCCeEEEEEEEcCCCEE
Confidence 5577899999999998774 46666552 221 23343 47777888999999999
Q ss_pred eeeeecccc-ceeccceeEEEEeCCC
Q 007635 513 WNLRVENLD-RWYLGQETYMKIVNPE 537 (595)
Q Consensus 513 W~~HCHil~-h~~~Gm~~~~~V~~~~ 537 (595)
+.--|.-+- ..|.-|-..+.|.+++
T Consensus 192 ~~g~CsE~CG~~Hs~M~~~v~vv~~~ 217 (225)
T MTH00168 192 FYGQCSEICGANHSFMPIVVEFVPWE 217 (225)
T ss_pred EEEEcccccCcCcCCCeEEEEEeCHH
Confidence 999998543 3467777777776543
No 121
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=33.57 E-value=1.4e+02 Score=22.97 Aligned_cols=46 Identities=22% Similarity=0.445 Sum_probs=27.5
Q ss_pred EEecCCCEEEEEEEEcCCCceEEEEEeCccceeeeccCccccceeecEEEEcCCcEEE
Q 007635 219 INVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQNYTSFEIHVGQSYS 276 (595)
Q Consensus 219 ~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi~~DG~~~~p~~~~~l~i~pG~R~d 276 (595)
+++.+|+..+||.-.. ..+.+.+-..+|.. ||. .+-+.|.+||++.
T Consensus 2 ~~L~~g~~~~lr~~~~-----~~l~v~~G~vWlT~-~g~------~~D~~L~~G~~l~ 47 (63)
T PF11142_consen 2 FELAPGETLSLRAAAG-----QRLRVESGRVWLTR-EGD------PDDYWLQAGDSLR 47 (63)
T ss_pred EEeCCCceEEeEcCCC-----cEEEEccccEEEEC-CCC------CCCEEECCCCEEE
Confidence 5677888888885442 23566666666643 442 2344566666653
No 122
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=32.34 E-value=37 Score=28.71 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=25.9
Q ss_pred EEECCCCCCceEEecCCCEEEEEEEeCCC
Q 007635 52 IAINGKFPGAVLNATTNNNIVINVQNDLD 80 (595)
Q Consensus 52 ~~~Ng~~PGP~i~v~~Gd~v~v~v~N~l~ 80 (595)
+.+||+.-=|-=.|+.||.|+|++.|.+-
T Consensus 36 V~vNG~~aKpS~~VK~GD~l~i~~~~~~~ 64 (100)
T COG1188 36 VKVNGQRAKPSKEVKVGDILTIRFGNKEF 64 (100)
T ss_pred EEECCEEcccccccCCCCEEEEEeCCcEE
Confidence 57899988889999999999999999864
No 123
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=31.94 E-value=1.6e+02 Score=25.83 Aligned_cols=18 Identities=28% Similarity=0.645 Sum_probs=16.1
Q ss_pred CCCccCCCCeEEEEEEec
Q 007635 104 TNCPIPSQWNWTYQFQVK 121 (595)
Q Consensus 104 tq~~I~PG~~~tY~f~~~ 121 (595)
..||+.+|+.++|.+.++
T Consensus 75 ~~CPl~~G~~~~y~~~~~ 92 (123)
T cd00916 75 TSCPLSAGEDVTYTLSLP 92 (123)
T ss_pred CCCCCcCCcEEEEEEeee
Confidence 679999999999999774
No 124
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.36 E-value=1.4e+02 Score=30.00 Aligned_cols=77 Identities=8% Similarity=0.097 Sum_probs=54.1
Q ss_pred eeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCcee
Q 007635 433 SLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGV 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~ 512 (595)
+.+.++.|..|++.+...| ..|.|.+ =+.+ ..+|.+ ||-...+.|.++.||.
T Consensus 174 n~lvlP~~~~v~~~ltS~D-ViHSf~v-------P~lg-----------------vK~Dai---PGr~n~~~~~~~~~G~ 225 (262)
T MTH00027 174 NRLILPVDTNVRVLITAAD-VLHSWTV-------PSLA-----------------VKMDAV---PGRINETGFLIKRPGI 225 (262)
T ss_pred ceEEEeeCcEEEEEEEcCc-cccceec-------cccc-----------------CcccCC---CCceeeEEEEcCCcEE
Confidence 4577899999999988764 5565544 2221 333443 5666778899999999
Q ss_pred eeeeecccc-ceeccceeEEEEeCCC
Q 007635 513 WNLRVENLD-RWYLGQETYMKIVNPE 537 (595)
Q Consensus 513 W~~HCHil~-h~~~Gm~~~~~V~~~~ 537 (595)
+.-.|.-+- .-|..|-..+.|.+++
T Consensus 226 y~g~CsE~CG~~Hs~Mpi~v~vv~~~ 251 (262)
T MTH00027 226 FYGQCSEICGANHSFMPIVVESVSLS 251 (262)
T ss_pred EEEEcchhcCcCcCCCeEEEEEECHH
Confidence 999999544 3477887777777543
No 125
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=29.97 E-value=1.5e+02 Score=26.89 Aligned_cols=54 Identities=19% Similarity=0.337 Sum_probs=37.5
Q ss_pred CEEEEEEEEcCCCceEEEEEeCccceeeeccCccccceee-------cEEEEcCCcEE-EEEEEcC
Q 007635 225 KTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQNY-------TSFEIHVGQSY-SFLVTMD 282 (595)
Q Consensus 225 ~~~rlRliN~~~~~~~~~~i~gh~~~vi~~DG~~~~p~~~-------~~l~i~pG~R~-dvlv~~~ 282 (595)
.+|.|.+-|.|... +.++...++|+ +||.++.|..+ +++.|.|||-- ++.+.-.
T Consensus 70 ~t~t~yiKNtG~~~---~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~~ 131 (154)
T COG3354 70 YTYTFYIKNTGSDS---IAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNEA 131 (154)
T ss_pred eEEEEEEecCCCcc---cccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEeccC
Confidence 57999999999863 35566666664 68877765432 56778999977 5555433
No 126
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.75 E-value=1.9e+02 Score=28.58 Aligned_cols=77 Identities=10% Similarity=0.083 Sum_probs=54.8
Q ss_pred eeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCcee
Q 007635 433 SLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGV 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~ 512 (595)
+.+.++.|+.|++.+...| ..|.|.+- +.+ ...|.+ ||-...+.+.++.||.
T Consensus 143 n~l~lP~~~~v~~~itS~D-ViHSf~vP-------~lg-----------------~K~Dav---PGr~n~~~~~~~~~G~ 194 (231)
T MTH00080 143 NRCVLPCDTNIRFCITSSD-VIHSWALP-------SLS-----------------IKMDAM---SGILSTLCYSFPMPGV 194 (231)
T ss_pred CceEeecCcEEEEEEEeCc-cccccccc-------ccC-----------------ceeecc---CCceEEEEEEEcCceE
Confidence 4567899999999998774 56766553 221 333443 6777788899999999
Q ss_pred eeeeecccc-ceeccceeEEEEeCCC
Q 007635 513 WNLRVENLD-RWYLGQETYMKIVNPE 537 (595)
Q Consensus 513 W~~HCHil~-h~~~Gm~~~~~V~~~~ 537 (595)
+.-.|--+= ..|..|-..+.|.+++
T Consensus 195 y~g~CsE~CG~~Hs~M~~~v~vv~~~ 220 (231)
T MTH00080 195 FYGQCSEICGANHSFMPIAVEVTLLD 220 (231)
T ss_pred EEEEehhhcCcCccCCEEEEEEECHH
Confidence 999998433 4577788888777554
No 127
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.63 E-value=1.7e+02 Score=28.77 Aligned_cols=77 Identities=13% Similarity=0.222 Sum_probs=55.0
Q ss_pred eeeeecCCcEEEEEEecCCCCceeeeecCceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCcee
Q 007635 433 SLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGV 512 (595)
Q Consensus 433 ~v~~~~~g~~ve~vl~N~~~~~HP~HlHG~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~ 512 (595)
+.+.++.|+.|++.+...| ..|.|.+- +.+ ..+|.+ ||-...+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~D-ViHsf~vP-------~l~-----------------~K~Dai---PG~~n~~~~~~~~~G~ 191 (226)
T MTH00139 140 NRLVLPYKSNIRALITAAD-VLHSWTVP-------SLG-----------------VKIDAV---PGRLNQVGFFINRPGV 191 (226)
T ss_pred ceEEEecCCEEEEEEecCc-cccceecc-------ccC-----------------ccccCC---CCcEEEEEEEcCCCEE
Confidence 5577899999999998764 56666552 221 344554 6777888999999999
Q ss_pred eeeeecccc-ceeccceeEEEEeCCC
Q 007635 513 WNLRVENLD-RWYLGQETYMKIVNPE 537 (595)
Q Consensus 513 W~~HCHil~-h~~~Gm~~~~~V~~~~ 537 (595)
+.--|--+- .-|.-|-..++|.+++
T Consensus 192 y~g~CsE~CG~~Hs~M~~~v~vv~~~ 217 (226)
T MTH00139 192 FYGQCSEICGANHSFMPIVVEAISPK 217 (226)
T ss_pred EEEEChhhcCcCcCCCeEEEEEeCHH
Confidence 999997543 3467777777776543
No 128
>PLN03148 Blue copper-like protein; Provisional
Probab=29.39 E-value=2.1e+02 Score=26.72 Aligned_cols=30 Identities=10% Similarity=0.235 Sum_probs=24.4
Q ss_pred EEeCCceeeeeeeccccceeccceeEEEEeC
Q 007635 505 VSLDNVGVWNLRVENLDRWYLGQETYMKIVN 535 (595)
Q Consensus 505 f~adNpG~W~~HCHil~h~~~Gm~~~~~V~~ 535 (595)
+..+.+|.+.|=|=. .|-..||-+.++|.+
T Consensus 90 v~L~~~G~~YFIcg~-ghC~~GmKl~I~V~~ 119 (167)
T PLN03148 90 IPLNKAKRYYFICGN-GQCFNGMKVTILVHP 119 (167)
T ss_pred EEecCCccEEEEcCC-CccccCCEEEEEEcC
Confidence 455788888888884 799999999999963
No 129
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=27.98 E-value=2.2e+02 Score=24.42 Aligned_cols=48 Identities=10% Similarity=0.183 Sum_probs=27.9
Q ss_pred EEEEEEEEcCCC-ceEEEEEeCcc-ceeeeccCccccceeecEEEEcCCcEEEEEEEcC
Q 007635 226 TYRVRVHNVGTS-TSLNFRIQNHN-LLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMD 282 (595)
Q Consensus 226 ~~rlRliN~~~~-~~~~~~i~gh~-~~vi~~DG~~~~p~~~~~l~i~pG~R~dvlv~~~ 282 (595)
.|+++|+|.+.. ..+.+.++|.. +++. .....+.|.+|+..++-|...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~---------~~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQ---------GPENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE----------ES--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEE---------CCCcceEECCCCEEEEEEEEE
Confidence 489999999986 35667777642 2221 124678899999887766543
No 130
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=27.81 E-value=65 Score=29.25 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=23.0
Q ss_pred CCccCCCCeEEEEEEe---cCceeeeEEeccc
Q 007635 105 NCPIPSQWNWTYQFQV---KDQIGSFFYFPSL 133 (595)
Q Consensus 105 q~~I~PG~~~tY~f~~---~~~~Gt~wYH~H~ 133 (595)
..||+||++++-.++. |...|+|.|++-.
T Consensus 96 ~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a 127 (146)
T PF10989_consen 96 DEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTA 127 (146)
T ss_pred CCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEE
Confidence 5789999999999833 3456999999863
No 131
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=27.50 E-value=1.4e+02 Score=26.55 Aligned_cols=49 Identities=14% Similarity=0.366 Sum_probs=28.9
Q ss_pred EEEEEEEEcCCCceEEEEEeCccceeeeccCcccc----ceeecEEEEcCCcEEEE
Q 007635 226 TYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTS----QQNYTSFEIHVGQSYSF 277 (595)
Q Consensus 226 ~~rlRliN~~~~~~~~~~i~gh~~~vi~~DG~~~~----p~~~~~l~i~pG~R~dv 277 (595)
.|++||.|.+.. .+.+-...+.+...||...+ ...-..=.|.|||.++.
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y 84 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEY 84 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEE
Confidence 479999998765 24555566666666664321 11123346778886643
No 132
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=25.37 E-value=1.2e+02 Score=26.35 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHHhhcccccCce-EEEEEEEEEEEeCC-CCeeEEEEEECCCCCCceEE
Q 007635 6 FLSLFLVLPIHIALFSSLCFAEDDT-IFYDFKVSYITASP-LGVPQQVIAINGKFPGAVLN 64 (595)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~-dG~~~~~~~~Ng~~PGP~i~ 64 (595)
-++|||+.+.+.-+...--++..++ ...+|-++..+..| +|++..++-.-..-|.|-++
T Consensus 16 ~~i~~l~i~~l~~c~~~~es~~~k~~~pVT~hVen~e~~pi~~~ev~lmKa~ds~~qPs~e 76 (131)
T PF10794_consen 16 KLIWFLVIIVLCGCIANNESAASKVVNPVTFHVENAEGQPIKDFEVTLMKAADSDPQPSKE 76 (131)
T ss_pred hHHHHHHHHHHhcccccchhhhceecccEEEEEecCCCCcccceEEEEEeccccCCCCchh
Confidence 3556544443333333333444443 37788888777665 47766555545677777653
No 133
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=24.32 E-value=1.7e+02 Score=28.76 Aligned_cols=59 Identities=7% Similarity=0.109 Sum_probs=40.7
Q ss_pred eEEEecCCCEEEEEEEEcCCCceEEEEEeCccceeeeccCccccceeecEEEEcCCcEEEEEEEcCCCCCcceEEEEee
Q 007635 217 ETINVDPGKTYRVRVHNVGTSTSLNFRIQNHNLLLVETEGHYTSQQNYTSFEIHVGQSYSFLVTMDQNASSDYYIVASA 295 (595)
Q Consensus 217 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi~~DG~~~~p~~~~~l~i~pG~R~dvlv~~~~~~g~~y~i~~~~ 295 (595)
..+.+..|+.+||++-..... |.|+| |...-....-||..-.+-++++ .+| .|......
T Consensus 139 nel~lP~g~pV~~~ltS~DVi---------HSF~V---------P~l~~K~DaiPG~~n~~~~~~~-~~G-~y~g~CaE 197 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNSVM---------NSFFI---------PQLGSQIYAMAGMQTKLHLIAN-EPG-VYDGISAN 197 (226)
T ss_pred ceEEEECCCEEEEEEEECchh---------hhhhh---------hhcCCeeecCCCceEEEEEEeC-CCE-EEEEEchh
Confidence 568899999999998876654 34443 2222234555888888888888 467 88887654
No 134
>COG1470 Predicted membrane protein [Function unknown]
Probab=21.73 E-value=5.5e+02 Score=28.09 Aligned_cols=72 Identities=21% Similarity=0.409 Sum_probs=48.8
Q ss_pred eEEEecCCC--EEEEEEEEcCCC--ceEEEEEeCccceeeeccCccccceeecEEEEcCCcEEEE--EEEcCC--CCCcc
Q 007635 217 ETINVDPGK--TYRVRVHNVGTS--TSLNFRIQNHNLLLVETEGHYTSQQNYTSFEIHVGQSYSF--LVTMDQ--NASSD 288 (595)
Q Consensus 217 ~~~~v~~G~--~~rlRliN~~~~--~~~~~~i~gh~~~vi~~DG~~~~p~~~~~l~i~pG~R~dv--lv~~~~--~~g~~ 288 (595)
-.+++.+|+ +.+++|-|.|+. ..+.+.+++-.=|=+.+|+..+ + .|.||+|-.| -++++. .+| +
T Consensus 389 ~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~--sL~pge~~tV~ltI~vP~~a~aG-d 460 (513)
T COG1470 389 YRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----P--SLEPGESKTVSLTITVPEDAGAG-D 460 (513)
T ss_pred EEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccc-----c--ccCCCCcceEEEEEEcCCCCCCC-c
Confidence 567888886 469999999975 4566777776667778887643 2 4566766544 455543 345 8
Q ss_pred eEEEEeee
Q 007635 289 YYIVASAR 296 (595)
Q Consensus 289 y~i~~~~~ 296 (595)
|.+.....
T Consensus 461 Y~i~i~~k 468 (513)
T COG1470 461 YRITITAK 468 (513)
T ss_pred EEEEEEEe
Confidence 98876554
No 135
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=21.38 E-value=94 Score=28.20 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=20.8
Q ss_pred ECCCcEEEEEEEe-CCc---eeeeeeeccc
Q 007635 495 VYPGAWTAILVSL-DNV---GVWNLRVENL 520 (595)
Q Consensus 495 v~p~g~~~Irf~a-dNp---G~W~~HCHil 520 (595)
|+||..+.|.++. .|| |+|+|+|-..
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~ 128 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTAF 128 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEEE
Confidence 4789999999954 576 9999999863
No 136
>PRK13202 ureB urease subunit beta; Reviewed
Probab=21.34 E-value=3e+02 Score=23.42 Aligned_cols=59 Identities=10% Similarity=-0.054 Sum_probs=39.2
Q ss_pred eEEecCC--CEEEEEEEeCCCCCce--eecCCCccCCCCC----------CCCCCCCCCccCCCCeEEEEEEe
Q 007635 62 VLNATTN--NNIVINVQNDLDESLL--MTWPGIQMRRNSW----------QDGVQGTNCPIPSQWNWTYQFQV 120 (595)
Q Consensus 62 ~i~v~~G--d~v~v~v~N~l~~~~s--iH~HG~~~~~~~~----------~DGv~~tq~~I~PG~~~tY~f~~ 120 (595)
.|++++| +++.++|+|.-+.|.- -|+|=......-. .|=..||..-..||++.+-+...
T Consensus 12 ~I~ln~grr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 84 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVP 84 (104)
T ss_pred CEEeCCCCCceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEE
Confidence 4899999 5999999999987654 4666544422111 12222466667888888877654
No 137
>PF09394 Inhibitor_I42: Chagasin family peptidase inhibitor I42; InterPro: IPR018990 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Chagasin reversible inhibitor of papain-like cysteine proteases []. Chagasin has a beta-barrel structure, which is a unique variant of the immunoglobulin fold with homology to human CD8alpha [, ].; PDB: 2NQD_A 2NNR_A 2H7W_B 3E1Z_A 3CBK_B 3CBJ_B 2OUL_B 2FO8_A 2WGN_B 2C34_A ....
Probab=20.92 E-value=4.5e+02 Score=21.16 Aligned_cols=80 Identities=18% Similarity=0.157 Sum_probs=50.1
Q ss_pred eeecCCcEEEEEEecCCCCceeeeecC--ceEEEEeecccccCCCCCCCCCcCCCCcccEEEECCCcEEEEEEEeCCcee
Q 007635 435 INATYKGFIEIILQNNDTKMQSFHMDG--YSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGV 512 (595)
Q Consensus 435 ~~~~~g~~ve~vl~N~~~~~HP~HlHG--~~F~Vv~~~~G~~~~~~~~~~n~~~p~~RDTv~v~p~g~~~Irf~adNpG~ 512 (595)
++++.|+.+++.|......---|++.. ....+++...- +.. +..- .+..+|...+.|++..||.
T Consensus 1 I~v~~g~~~~I~L~~npstGY~W~~~~~~~~l~l~~~~~~---~~~--------~~~~---~vG~~g~~~f~f~a~~~G~ 66 (92)
T PF09394_consen 1 ITVKVGDTFEIELPENPSTGYSWSLSSDSDGLQLVSEEYI---PDN--------SPSG---LVGAPGTRTFTFKALKPGT 66 (92)
T ss_dssp -EEETTSEEEEEEEEBCCGTBEEEECTSTTTEEEEEEEEE---ESS--------TSST---SSTSSEEEEEEEEESSSEE
T ss_pred CeecCCCEEEEEECCCCCCCeEEEEecCCCeEEEcCCcEE---eCC--------CCcC---CCCCCcEEEEEEEEecCee
Confidence 356789999999986655556677776 34444443211 110 0000 4556788999999999999
Q ss_pred eeeeeccccceeccce
Q 007635 513 WNLRVENLDRWYLGQE 528 (595)
Q Consensus 513 W~~HCHil~h~~~Gm~ 528 (595)
.-++.--...|..+-.
T Consensus 67 ~~i~~~y~r~we~~~~ 82 (92)
T PF09394_consen 67 TTIKFEYRRPWEKGSP 82 (92)
T ss_dssp EEEEEEEEBTTTBSTT
T ss_pred EEEEEEEECcCCCCCc
Confidence 9888765555555433
No 138
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=20.66 E-value=2.8e+02 Score=30.12 Aligned_cols=28 Identities=25% Similarity=0.194 Sum_probs=21.2
Q ss_pred EEECCCcEEEEEEEeCCceeeeee----eccc
Q 007635 493 TEVYPGAWTAILVSLDNVGVWNLR----VENL 520 (595)
Q Consensus 493 v~v~p~g~~~Irf~adNpG~W~~H----CHil 520 (595)
+.+-|....++-|++|-||.|++- ||.+
T Consensus 594 ~~v~pq~tasvtf~a~kpgv~w~ycs~fchal 625 (637)
T COG4263 594 MEVKPQRTASVTFYADKPGVAWYYCSWFCHAL 625 (637)
T ss_pred EEEccCCceEEEEEccCCeeeehhhhhHHHHH
Confidence 345566777889999999999755 6664
No 139
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=20.61 E-value=1.6e+02 Score=21.13 Aligned_cols=41 Identities=5% Similarity=-0.024 Sum_probs=30.2
Q ss_pred cCCCCcccEEE-ECCCcEEEEEEEeCCceeeeeeecccccee
Q 007635 484 KWDAISKCTTE-VYPGAWTAILVSLDNVGVWNLRVENLDRWY 524 (595)
Q Consensus 484 ~~~p~~RDTv~-v~p~g~~~Irf~adNpG~W~~HCHil~h~~ 524 (595)
+..|..+-+.. .+.|....++++-..-..+=+||..+.|..
T Consensus 3 ~~kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~ 44 (49)
T PF14392_consen 3 VSKPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSD 44 (49)
T ss_pred CCCcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCH
Confidence 34466665444 345778888888888889999999988864
No 140
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=20.11 E-value=98 Score=25.13 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=25.8
Q ss_pred CCCe---eEEEEEECCCCCCceEEecCCCEEEEE
Q 007635 44 PLGV---PQQVIAINGKFPGAVLNATTNNNIVIN 74 (595)
Q Consensus 44 ~dG~---~~~~~~~Ng~~PGP~i~v~~Gd~v~v~ 74 (595)
..|. +...+.+||+.-++.-+++.||+|.|.
T Consensus 41 sLGVP~tEV~~i~vNG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 41 SLGVPHTEVGLILVNGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred HcCCChHHeEEEEECCEECCCcccCCCCCEEEEE
Confidence 3464 457799999999999999999999874
No 141
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=20.05 E-value=45 Score=31.16 Aligned_cols=29 Identities=21% Similarity=0.418 Sum_probs=24.5
Q ss_pred EEecCCCEEEEEEEeCCCCCceeecCCCc
Q 007635 63 LNATTNNNIVINVQNDLDESLLMTWPGIQ 91 (595)
Q Consensus 63 i~v~~Gd~v~v~v~N~l~~~~siH~HG~~ 91 (595)
...+-++.+.+++.|++....++||||+-
T Consensus 71 ~~~n~~~~~~~d~~~rlt~~~s~~W~~vl 99 (191)
T KOG4387|consen 71 LPGNDRKPGILDFQERLTVAKSMNWHGVL 99 (191)
T ss_pred ccccCCCCcEEeccchhheeeecccceEE
Confidence 34456678899999999999999999994
Done!