BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007636
(595 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EEX|A Chain A, Crystal Structure Of Cel44a, Gh Family 44 Endoglucanase
From Clostridium Thermocellum
pdb|2EJ1|A Chain A, Crystal Structure Of Cel44a, Gh Family 44 Endoglucanase
From Clostridium Thermocellum
pdb|2EQD|A Chain A, Crystal Structure Of Cel44a, Gh Family 44 Endoglucanase
From Clostridium Thermocellum
Length = 519
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 76/204 (37%), Gaps = 39/204 (19%)
Query: 289 SVSVGFLLRLLSTAIYLG--GVSPVTKTEL---RRRASIQFEEATVGDLLLPSHSPSDNH 343
S +V + L L A Y+ G PV++ E R ++FE+ P D
Sbjct: 99 SKNVPYTLITLQAAGYVSADGNGPVSQEETAPSSRWKEVKFEKGA------PFSLTPDTE 152
Query: 344 HQYIYDIDLVMTVLESYL-----------------VLWRRQSPGTTPAESNNQFLMS--- 383
Y+Y + V ++ Y LW P P + L+
Sbjct: 153 DDYVYMDEFVNYLVNKYGNASTPTGIKGYSIDNQPALWSHTHPRIHPDNVTAKELIEKSV 212
Query: 384 SIRKVAKIIDSYLQVVARDINMPVMKLVSLAETL-PAIARGKHDDLYK-FINIYLKEHPE 441
++ K K +D Y ++ P + + ETL A G + Y+ FI+ YL + +
Sbjct: 213 ALSKAVKKVDPYAEIFG-----PALYGFAAYETLQSAPDWGTEGEGYRWFIDYYLDKMKK 267
Query: 442 LSKTERKRLCRILDCQKLSPEVRA 465
S E KRL +LD PE R
Sbjct: 268 ASDEEGKRLLDVLDVH-WYPEARG 290
>pdb|2E0P|A Chain A, The Crystal Structure Of Cel44a
pdb|2E4T|A Chain A, Crystal Structure Of Cel44a, Gh Family 44 Endoglucanase
From Clostridium Thermocellum
pdb|2EO7|A Chain A, Crystal Structure Of Cel44a, Gh Family 44 Endoglucanase
From Clostridium Thermocellum
Length = 519
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 76/204 (37%), Gaps = 39/204 (19%)
Query: 289 SVSVGFLLRLLSTAIYLG--GVSPVTKTEL---RRRASIQFEEATVGDLLLPSHSPSDNH 343
S +V + L L A Y+ G PV++ E R ++FE+ P D
Sbjct: 99 SKNVPYTLITLQAAGYVSADGNGPVSQEETAPSSRWKEVKFEKGA------PFSLTPDTE 152
Query: 344 HQYIYDIDLVMTVLESYL-----------------VLWRRQSPGTTPAESNNQFLMS--- 383
Y+Y + V ++ Y LW P P + L+
Sbjct: 153 DDYVYMDEFVNYLVNKYGNASTPTGIKGYSIDNEPALWSHTHPRIHPDNVTAKELIEKSV 212
Query: 384 SIRKVAKIIDSYLQVVARDINMPVMKLVSLAETL-PAIARGKHDDLYK-FINIYLKEHPE 441
++ K K +D Y ++ P + + ETL A G + Y+ FI+ YL + +
Sbjct: 213 ALSKAVKKVDPYAEIFG-----PALYGFAAYETLQSAPDWGTEGEGYRWFIDYYLDKMKK 267
Query: 442 LSKTERKRLCRILDCQKLSPEVRA 465
S E KRL +LD PE R
Sbjct: 268 ASDEEGKRLLDVLDVH-WYPEARG 290
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 25 DAPSDLVIQVNNIRYLLHKFPLLPKCGLLQRLCSDPEDSDSVTIELHDIPGGEDAFELCA 84
D +D+VI V+ ++ HK L+ GL + +D + I L D + F +
Sbjct: 27 DILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINL-DPEINPEGFNILL 85
Query: 85 KFCYGITINLSAHNFVPAFCAAKFLRMAESVE 116
F Y +NL N + A +L+M V+
Sbjct: 86 DFMYTSRLNLREGNIMAVMATAMYLQMEHVVD 117
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 25 DAPSDLVIQVNNIRYLLHKFPLLPKCGLLQRLCSDPEDSDSVTIELHDIPGGEDAFELCA 84
D +D+VI V+ ++ HK L+ GL + +D + I L D + F +
Sbjct: 30 DILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINL-DPEINPEGFCILL 88
Query: 85 KFCYGITINLSAHNFVPAFCAAKFLRMAESVE 116
F Y +NL N + A +L+M V+
Sbjct: 89 DFMYTSRLNLREGNIMAVMATAMYLQMEHVVD 120
>pdb|2ZXC|A Chain A, Seramidase Complexed With C2
pdb|2ZXC|B Chain B, Seramidase Complexed With C2
pdb|2ZWS|A Chain A, Crystal Structure Analysis Of Neutral Ceramidase From
Pseudomonas Aeruginosa
Length = 646
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 175 SKVSWSYT-YTRPGYTQKRHQIAPKDWWTEDISEL 208
+ +SWS T PG+ RH K++WT+ ISE+
Sbjct: 598 ATISWSIPPGTEPGHYYIRHYGNAKNFWTQKISEI 632
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,698,603
Number of Sequences: 62578
Number of extensions: 663560
Number of successful extensions: 1563
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1560
Number of HSP's gapped (non-prelim): 6
length of query: 595
length of database: 14,973,337
effective HSP length: 104
effective length of query: 491
effective length of database: 8,465,225
effective search space: 4156425475
effective search space used: 4156425475
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)