Query 007637
Match_columns 595
No_of_seqs 177 out of 2439
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 06:46:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007637.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007637hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 5.4E-30 1.9E-34 278.6 31.0 433 28-567 9-477 (491)
2 2xut_A Proton/peptide symporte 100.0 4.5E-29 1.5E-33 273.8 24.5 476 29-568 9-509 (524)
3 1pw4_A Glycerol-3-phosphate tr 99.9 5.6E-26 1.9E-30 243.5 24.3 397 31-564 27-436 (451)
4 3o7q_A L-fucose-proton symport 99.9 1.1E-23 3.9E-28 224.8 29.8 178 28-238 22-228 (438)
5 4gc0_A D-xylose-proton symport 99.9 6.7E-23 2.3E-27 222.4 25.3 417 66-576 53-477 (491)
6 2gfp_A EMRD, multidrug resista 99.9 1.4E-21 4.9E-26 204.5 14.7 166 36-234 4-169 (375)
7 2cfq_A Lactose permease; trans 99.8 1.4E-21 4.7E-26 208.5 10.1 387 32-562 7-400 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.4 1.3E-12 4.5E-17 139.2 17.8 178 32-239 252-433 (451)
9 3o7q_A L-fucose-proton symport 99.4 4.5E-12 1.5E-16 134.7 16.3 166 32-232 258-425 (438)
10 2cfq_A Lactose permease; trans 99.2 3.9E-11 1.3E-15 127.3 13.9 167 42-240 230-400 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.1 5.3E-10 1.8E-14 120.7 12.9 188 32-243 283-475 (491)
12 4gc0_A D-xylose-proton symport 99.0 2E-09 6.8E-14 116.1 14.8 186 32-245 276-468 (491)
13 2gfp_A EMRD, multidrug resista 98.7 1.3E-09 4.5E-14 113.2 1.0 163 32-227 199-364 (375)
14 2xut_A Proton/peptide symporte 98.1 1.3E-05 4.6E-10 86.8 11.9 111 413-560 84-197 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=5.4e-30 Score=278.64 Aligned_cols=433 Identities=19% Similarity=0.284 Sum_probs=291.3
Q ss_pred CCCCchhHHHHHHHHHHHHHhhhchHHHHHHhhhh-----cCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc-ccchhHH
Q 007637 28 GGSLRTMPFIIVNESFEKVASYGLLPNMIFYLMNG-----YHVEAANGASMLSIWSSISNFLAIVGAFLADS-YMGRFWV 101 (595)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr-~~Grr~~ 101 (595)
++++|.++.+....+++.+++|+..++++.|+.+. +|++..+.+++.+++.++..++++++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 45667888888899999999999999999999998 99999999999999999999999999999999 7 99999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhcccCCCCCCc
Q 007637 102 ILLGSFSSLLGTTTLWSTAMIPQLKPAPCNQLVSSNCSSATPAQFAILLSSFALISIGAGCVRPCSIAFGADQLDNKDNP 181 (595)
Q Consensus 102 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~ 181 (595)
+.++.++..++.++++++. +...++++|+++|++.|...++..++++|.+|+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-- 141 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALPF------------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD-- 141 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCC------------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT--
T ss_pred HHHHHHHHHHHHHHHHHhh------------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc--
Confidence 9999999999988887654 56778999999999999999999999999999865
Q ss_pred chhhhHhhHHHHHHHHHhhhhHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhCcccccc---CCCC-ChhHHHH
Q 007637 182 KNKRVLETFFNWYYASTSVSGMLAFTIIVYIQDHLGWKIGFGVRAILMVLSTLMFLFGSHLYIKV---QPDK-SLFTSFI 257 (595)
Q Consensus 182 ~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~ 257 (595)
+.|++++++++...++|..++|.+++++.++.||+++|++.++..+++.+.+++..++..++ +++. ....+..
T Consensus 142 ---~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (491)
T 4aps_A 142 ---RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVK 218 (491)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHH
T ss_pred ---ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhH
Confidence 34788999999999999999999999999999999999998777666666655443332111 1111 1111111
Q ss_pred HHHHH--------------HHhhccccCCCCCccccccCCCCccCCCCchhhhh----------hhhcccCCCCCCCCCC
Q 007637 258 QVIVA--------------SLRKISLYPSSNTVNYYHAKDSNYVTPTDNLRFLN----------KACMIENPEEDLNPDG 313 (595)
Q Consensus 258 ~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~~~~~~~~~~~ 313 (595)
+.... .......+. ++...... .....+++
T Consensus 219 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 272 (491)
T 4aps_A 219 PLLVKVSLAVAGFIAIIVVMNLVGWNSL------------------PAYINLLTIVAIAIPVFYFAWMISSV-------- 272 (491)
T ss_dssp HHHHHCCCCCHHHHHHHHHHHHHSSCCT------------------THHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccc------------------ccchhhhhHHHHHHHHHHHHHHhhcc--------
Confidence 10000 000000000 00000000 00000000
Q ss_pred CCCCCCccccchhhhhhhHHHhHHhhhhhhHhhhhhccc-cc-eeeeeccccCCCCCCCcccccccccchhHHHHHHHHH
Q 007637 314 TASNPWKLCSIGQVESLKALLRITPMCSTGIIILLSLNQ-QT-FATLQAKTMDRHISPSFQIPAGSFTVFTIITVTLWIA 391 (595)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 391 (595)
.. ...+.+.......++.....++..+.+ .. +..+.....+... ...+.......+..++..+
T Consensus 273 ---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 337 (491)
T 4aps_A 273 ---------KV-TSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSW-----FPVSWFQSLNPLFIMLYTP 337 (491)
T ss_dssp -------------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSS-----SCSGGGTTHHHHHHHHHHH
T ss_pred ---------cc-cHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCc-----cCHHHHhccchHHHHHHHH
Confidence 00 001222222333444444444444444 22 2122222222211 3355566667777777777
Q ss_pred hHhhhhhhhhccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcCCCCccccchHHHHHHHHHHHHH
Q 007637 392 IYDRAVVPILVKFTGHPRGLSPKMRMGIGLLLSAVSMASAAVVENKRRKFAIDQGLVDEPQKVMDMSAMWLIPQFSLIGL 471 (595)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~g~ 471 (595)
+.+++ .+|+++|+ ......+..+.++.++++..+.+..... + + ..+.+.+++++.+++.++
T Consensus 338 ~~~~l----~~r~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----~--~~~~~~~~~~~~~~l~g~ 398 (491)
T 4aps_A 338 FFAWL----WTAWKKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGALY-------G----T--SGKVSPLWLVGSWALVIL 398 (491)
T ss_dssp HHHHH----HHHTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHHC-------C----C--CTTCCTHHHHHHHHHHHH
T ss_pred HHHHH----HHHHhccC--CCchHHHHHHHHHHHHHHHHHHHHHHhc-------C----C--CCCccHHHHHHHHHHHHH
Confidence 66554 66666654 4555667788888888877776543110 0 0 012467788888899999
Q ss_pred HHHHHhhhHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcccccCCCCchhhHHHHHHHHHH
Q 007637 472 AEAFNAIGQIEFYYSQLPKSMSSMAMAIFTLGMAVANLLGGLLVKIVDRVTRKHGKESWLSSNLNKGHLDYFYWLLMAMC 551 (595)
Q Consensus 472 g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~~g~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~ 551 (595)
+.+...+..+.+..|.+|++.||+++|+.++.+.+|+.+++.+.+.+.+. ++.+.|.+.++++
T Consensus 399 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 461 (491)
T 4aps_A 399 GEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-----------------SEVAYFSYFGLGS 461 (491)
T ss_dssp HHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----------------STTHHHHHTHHHH
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999997776531 2346788888888
Q ss_pred HHHHHHHHHhhhcccc
Q 007637 552 LVNFGYFLVCCWAYGP 567 (595)
Q Consensus 552 l~~~v~~~~~~~~~~~ 567 (595)
+++.++++++.++.++
T Consensus 462 ~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 462 VVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888777776655443
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=4.5e-29 Score=273.79 Aligned_cols=476 Identities=20% Similarity=0.302 Sum_probs=281.7
Q ss_pred CCCchhHHHHHHHHHHHHHhhhchHHHHHHhhhhcC------CchhhHHHHHHHHHHHHHHHHHHHHHHhhccc-chhHH
Q 007637 29 GSLRTMPFIIVNESFEKVASYGLLPNMIFYLMNGYH------VEAANGASMLSIWSSISNFLAIVGAFLADSYM-GRFWV 101 (595)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~------~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grr~~ 101 (595)
+++|.++.+.+..++.++++|++.++++.|+.+++| ++..+.+++.+++.++..++.+++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~ 87 (524)
T 2xut_A 9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNT 87 (524)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHH
Confidence 344566777888999999999999999999999999 999999999999999999999999999999 6 99999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhcccCCCCCCc
Q 007637 102 ILLGSFSSLLGTTTLWSTAMIPQLKPAPCNQLVSSNCSSATPAQFAILLSSFALISIGAGCVRPCSIAFGADQLDNKDNP 181 (595)
Q Consensus 102 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~ 181 (595)
+.++.++.+++.++++++. .+.+.++++|+++|++.|...+...+++.|.+|++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r- 143 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIFE-----------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK- 143 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTS-----------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT-
T ss_pred HHHHHHHHHHHHHHHHHhc-----------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch-
Confidence 9999999999888877642 1467788999999999999999999999999998664
Q ss_pred chhhhHhhHHHHHHHHHhhhhHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhCccccccCCCCChhHHHHHHHH
Q 007637 182 KNKRVLETFFNWYYASTSVSGMLAFTIIVYIQDHLGWKIGFGVRAILMVLSTLMFLFGSHLYIKVQPDKSLFTSFIQVIV 261 (595)
Q Consensus 182 ~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (595)
..+...+++++...++|..++|.+++++.+..||+++|++.++..+++.+.+++..++..++++++++..+..+.+.
T Consensus 144 ---~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (524)
T 2xut_A 144 ---SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIR 220 (524)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHH
Confidence 22355666688999999999999999999989999999998877766666555444433222221111111111111
Q ss_pred HHHhhccccCCCCCcccc----------ccCCCCccCCCCchhhhhhhhcccCCCCCCCCCCCCCCCC-------ccccc
Q 007637 262 ASLRKISLYPSSNTVNYY----------HAKDSNYVTPTDNLRFLNKACMIENPEEDLNPDGTASNPW-------KLCSI 324 (595)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 324 (595)
...++++... ++..... ..........-........ ...+++ ...+| +.+..
T Consensus 221 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~~ 289 (524)
T 2xut_A 221 SALLTKVEGK-GNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMV-LVMGFV---------GAGASLQLERARKSHPD 289 (524)
T ss_dssp ------CTTH-HHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHH-HHHHHH---------HTGGGTHHHHSCCSCCS
T ss_pred HHHhhhhccc-Cccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhh-hhhccc---------ccchhhHHhhhhccccH
Confidence 1111110000 0000000 0000000000000000000 000000 00011 00000
Q ss_pred hhhhhhhHHHhHHhhhhhhHhhhhhccc-cceeeeeccccCCCCCCCcccccccccchhHHHHHHHHHhHhhhhhhhhcc
Q 007637 325 GQVESLKALLRITPMCSTGIIILLSLNQ-QTFATLQAKTMDRHISPSFQIPAGSFTVFTIITVTLWIAIYDRAVVPILVK 403 (595)
Q Consensus 325 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 403 (595)
.+..+.|..+....++.....++..+.+ .+....+....+... + .+.+.+...+.+..++..++.+.+..+..+|
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (524)
T 2xut_A 290 AAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIER 365 (524)
T ss_dssp SSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC-------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHh
Confidence 1112334444444555444455555554 332222222222111 0 1234444555555666667766665555566
Q ss_pred ccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcCCCCccccchHHHHHHHHHHHHHHHHHHhhhHHHH
Q 007637 404 FTGHPRGLSPKMRMGIGLLLSAVSMASAAVVENKRRKFAIDQGLVDEPQKVMDMSAMWLIPQFSLIGLAEAFNAIGQIEF 483 (595)
Q Consensus 404 ~~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~g~g~~~~~~~~~~~ 483 (595)
++++ .++.+.+.+|.++.+++++.+++...+. +.....+.+++++.+++.+++++...+..+++
T Consensus 366 ~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 429 (524)
T 2xut_A 366 MGVK---LTALRKMGAGIAITGLSWIVVGTIQLMM-------------DGGSALSIFWQILPYALLTFGEVLVSATGLEF 429 (524)
T ss_dssp --------CCHHHHHTHHHHHHHHHHTTTTTTTTT-------------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHh-------------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444 5566677788888777776665432100 00012466778888999999999999999999
Q ss_pred HhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcccccCCCCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 007637 484 YYSQLPKSMSSMAMAIFTLGMAVANLLGGLLVKIVDRVTRKHGKESWLSSNLNKGHLDYFYWLLMAMCLVNFGYFLVCCW 563 (595)
Q Consensus 484 ~~~~~P~~~rg~~~gl~~~~~~lg~~~g~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~l~~~v~~~~~~~ 563 (595)
..|.+|++.||+++|+.++..++|+.+++.+.+.+.+... .+|..++ +-+.....|++.+++++++.++++++.+
T Consensus 430 ~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 430 AYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQT-GMSVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp HHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHH-HSCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----ccccccc-cccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998764321 1232110 0001123377888888888777776665
Q ss_pred ccccc
Q 007637 564 AYGPS 568 (595)
Q Consensus 564 ~~~~~ 568 (595)
+++++
T Consensus 505 ~~~~~ 509 (524)
T 2xut_A 505 SYQMQ 509 (524)
T ss_dssp -----
T ss_pred Hhccc
Confidence 55443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.94 E-value=5.6e-26 Score=243.48 Aligned_cols=397 Identities=9% Similarity=-0.033 Sum_probs=252.6
Q ss_pred CchhHHHHHHHHHHHHHhhhchHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Q 007637 31 LRTMPFIIVNESFEKVASYGLLPNMIFYLMNGYHVEAANGASMLSIWSSISNFLAIVGAFLADSYMGRFWVILLGSFSSL 110 (595)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 110 (595)
|+.++......++..+..+.+...++.+ .+++ .+..+.+++.+++.++..++.+++|+++||+ |||++++++.++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 4555555666677766666666666555 5567 9999999999999999999999999999996 99999999999999
Q ss_pred HHHHHHHH----hcccCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhcccCCCCCCcchhhh
Q 007637 111 LGTTTLWS----TAMIPQLKPAPCNQLVSSNCSSATPAQFAILLSSFALISIGAGCVRPCSIAFGADQLDNKDNPKNKRV 186 (595)
Q Consensus 111 l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (595)
++.+++++ +. +++.++++|+++|++.|...+...+++.|.+|+ ++
T Consensus 104 ~~~~~~~~~~~~~~------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~ 152 (451)
T 1pw4_A 104 AVMLFMGFVPWATS------------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KE 152 (451)
T ss_dssp HHHHHHHHCHHHHS------------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-------TH
T ss_pred HHHHHHHhhhhccc------------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc-------hh
Confidence 99988887 54 466789999999999999999999999999998 44
Q ss_pred HhhHHHHHHHHHhhhhHHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHhhCccccccCCCCChhHHHHHHHHHHHh
Q 007637 187 LETFFNWYYASTSVSGMLAFTIIVYIQDHLG-WKIGFGVRAILMVLSTLMFLFGSHLYIKVQPDKSLFTSFIQVIVASLR 265 (595)
Q Consensus 187 r~~~~~~~~~~~~~g~~~~p~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (595)
|++++++.+...++|.+++|.+++++.+..| ||++|++.++..++..+..++..++.++.....+.
T Consensus 153 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 219 (451)
T 1pw4_A 153 RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI------------- 219 (451)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-------------
Confidence 8999999999999999999999999888888 99999998877766655555544432221110000
Q ss_pred hccccCCCCCccccccCCCCccCCCCchhhhhhhhcccCCCCCCCCCCCCCCCCccccchhhhhhhHHHhHHhhhhhhHh
Q 007637 266 KISLYPSSNTVNYYHAKDSNYVTPTDNLRFLNKACMIENPEEDLNPDGTASNPWKLCSIGQVESLKALLRITPMCSTGII 345 (595)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 345 (595)
.+.+.. ...+ .. +++ .....++.....+..+.+.++...... .+
T Consensus 220 ------~~~~~~-~~~~---------------~~----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 263 (451)
T 1pw4_A 220 ------EEYKND-YPDD---------------YN----EKA-------EQELTAKQIFMQYVLPNKLLWYIAIAN---VF 263 (451)
T ss_dssp ------TTTCCC----------------------------------------CCTHHHHHHTSSCHHHHHHHHHH---HH
T ss_pred ------hhhccc-cccc---------------ch----hhh-------hcccccccchHHHHHcCHHHHHHHHHH---HH
Confidence 000000 0000 00 000 000000000000001112222111111 11
Q ss_pred hhhhccc-cceeeeeccccCCCCCCCccccc---ccccchhHHHHHHHHHhHhhhhhhhhccc--cCCCCCCCchHHHHH
Q 007637 346 ILLSLNQ-QTFATLQAKTMDRHISPSFQIPA---GSFTVFTIITVTLWIAIYDRAVVPILVKF--TGHPRGLSPKMRMGI 419 (595)
Q Consensus 346 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~ 419 (595)
....+.. ..+ ....+....+ .+. +.+.....+..++..++.++ +.+|. ++| +.+.+
T Consensus 264 ~~~~~~~~~~~---~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~g~----l~~~~~~~~~-------~~~~~ 325 (451)
T 1pw4_A 264 VYLLRYGILDW---SPTYLKEVKH----FALDKSSWAYFLYEYAGIPGTLLCGW----MSDKVFRGNR-------GATGV 325 (451)
T ss_dssp HHHHHHHHHHH---HHHHBTTBSC----CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTSTTCH-------HHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCCc-------hhHHH
Confidence 1111111 111 1111111111 111 22233333333444444333 35554 322 34455
Q ss_pred HHHHHH-HHHHHHHHHHHhhhhhhhccCCcCCCCccccchHHHHHHHHHHHHHHHHHHhhhHHHHHhccCCcchhhHHHH
Q 007637 420 GLLLSA-VSMASAAVVENKRRKFAIDQGLVDEPQKVMDMSAMWLIPQFSLIGLAEAFNAIGQIEFYYSQLPKSMSSMAMA 498 (595)
Q Consensus 420 g~~l~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g 498 (595)
+.++.. +++..+.+.. ..+.+......++.|++....++..+.+..|..|++.|++++|
T Consensus 326 ~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 385 (451)
T 1pw4_A 326 FFMTLVTIATIVYWMNP--------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAG 385 (451)
T ss_dssp HHHHHHHHHHHHTTSCC--------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc--------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHH
Confidence 544444 4444333211 1255666677778888888888888999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHhhhhccCCCCcccccCCCCchhhHHHHHHHHHHHHHHHHHHHhhhc
Q 007637 499 IFTLGMAV-ANLLGGLLVKIVDRVTRKHGKESWLSSNLNKGHLDYFYWLLMAMCLVNFGYFLVCCWA 564 (595)
Q Consensus 499 l~~~~~~l-g~~~g~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~l~~~v~~~~~~~~ 564 (595)
+.+....+ |+.+++.+.+.+.+.. ++...|++.+++.+++.+..+...++
T Consensus 386 ~~~~~~~~~g~~~~~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 386 FTGLFGYLGGSVAASAIVGYTVDFF----------------GWDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSS----------------CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999 9999999999887532 24567888888888877766665443
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.93 E-value=1.1e-23 Score=224.77 Aligned_cols=178 Identities=12% Similarity=0.105 Sum_probs=146.9
Q ss_pred CCCCchhHHHHHHHHHHHHHhhhchHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 007637 28 GGSLRTMPFIIVNESFEKVASYGLLPNMIFYLMNGYHVEAANGASMLSIWSSISNFLAIVGAFLADSYMGRFWVILLGSF 107 (595)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~ 107 (595)
+++++.+..+....++..+......+.++ ++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||++++++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 44455555555666666666665555554 46788999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHH---HHhcccCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhcccCCCCCCcchh
Q 007637 108 SSLLGTTTL---WSTAMIPQLKPAPCNQLVSSNCSSATPAQFAILLSSFALISIGAGCVRPCSIAFGADQLDNKDNPKNK 184 (595)
Q Consensus 108 ~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 184 (595)
+.+++.+++ .++. +++.++++|++.|++.|...+...+++.|.+|+++
T Consensus 100 ~~~~~~~~~~~~~~~~------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~----- 150 (438)
T 3o7q_A 100 LYALGAALFWPAAEIM------------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS----- 150 (438)
T ss_dssp HHHHHHHHHHHHHHTT------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT-----
T ss_pred HHHHHHHHHHhccccc------------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh-----
Confidence 999999888 4433 68889999999999999999999999999999844
Q ss_pred hhHhhHHHHHHHHHhhhhHHHHHHHHHhh-cccc-------------------------hhHHHHHHHHHHHHHHHHHHh
Q 007637 185 RVLETFFNWYYASTSVSGMLAFTIIVYIQ-DHLG-------------------------WKIGFGVRAILMVLSTLMFLF 238 (595)
Q Consensus 185 ~~r~~~~~~~~~~~~~g~~~~p~~~~~l~-~~~g-------------------------~~~~f~~~~~~~~~~~~~~~~ 238 (595)
|++.+++.+...++|..++|.+++++. +..+ ||+.|++.++..++..+.+++
T Consensus 151 --r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 151 --GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999988 5554 999998776655544444433
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.91 E-value=6.7e-23 Score=222.45 Aligned_cols=417 Identities=10% Similarity=0.028 Sum_probs=227.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCccccCCCCCCCchh
Q 007637 66 EAANGASMLSIWSSISNFLAIVGAFLADSYMGRFWVILLGSFSSLLGTTTLWSTAMIPQLKPAPCNQLVSSNCSSATPAQ 145 (595)
Q Consensus 66 s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (595)
+..+.+++.+.+.++..++++++|+++||+ |||++++++.+++.++.++++++........+ ..+.-.....+
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~------~~~~~~~~a~~ 125 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP------DNTVPVYLAGY 125 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS------SSSCCGGGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc------hhHHHHHHhhh
Confidence 345678889999999999999999999996 99999999999999999988864311100000 00000001236
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhcccCCCCCCcchhhhHhhHHHHHHHHHhhhhHHHHHHHHHhhcc--------cc
Q 007637 146 FAILLSSFALISIGAGCVRPCSIAFGADQLDNKDNPKNKRVLETFFNWYYASTSVSGMLAFTIIVYIQDH--------LG 217 (595)
Q Consensus 146 ~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~l~~~--------~g 217 (595)
...++++|+++|+|.|+..+...++++|..|+ +.|++..++.+.+..+|.++++.++..+... .+
T Consensus 126 ~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~-------~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4gc0_A 126 VPEFVIYRIIGGIGVGLASMLSPMYIAELAPA-------HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDG 198 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCG-------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-------HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchh
Confidence 88999999999999999999999999999999 5599999999999999999988777665432 34
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhCccccccCCCCChhHHHHHHHHHHHhhccccCCCCCccccccCCCCccCCCCchhhhh
Q 007637 218 WKIGFGVRAILMVLSTLMFLFGSHLYIKVQPDKSLFTSFIQVIVASLRKISLYPSSNTVNYYHAKDSNYVTPTDNLRFLN 297 (595)
Q Consensus 218 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 297 (595)
||..+.+..+..++.++. .+..|+-++....+.+..+..+.+.....+..... + .. +......
T Consensus 199 ~~~~~~~~~~~~~~~~~~-~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~-~----~~-----------~~~~~~~ 261 (491)
T 4gc0_A 199 WRYMFASECIPALLFLML-LYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQ-A----VQ-----------EIKHSLD 261 (491)
T ss_dssp HHHHHHTTHHHHHHHHHH-GGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHH-H----HH-----------HHHHHHH
T ss_pred hHHHhhhhhhhhhhhhhh-hhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHH-H----HH-----------HHHHHHH
Confidence 777776655544433333 22233321110000011111111111100000000 0 00 0000000
Q ss_pred hhhcccCCCCCCCCCCCCCCCCccccchhhhhhhHHHhHHhhhhhhHhhhhhccccceeeeeccccCCCCCCCccccccc
Q 007637 298 KACMIENPEEDLNPDGTASNPWKLCSIGQVESLKALLRITPMCSTGIIILLSLNQQTFATLQAKTMDRHISPSFQIPAGS 377 (595)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (595)
....... .......+.......... ...+... .....+.... ....+ ........
T Consensus 262 ~~~~~~~-------------------~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~-~~~~~-~~~~~~~~ 316 (491)
T 4gc0_A 262 HGRKTGG-------------------RLLMFGVGVIVIGVMLSI--FQQFVGI--NVVLYYAPEV-FKTLG-ASTDIALL 316 (491)
T ss_dssp HHHHHTT-------------------HHHHSCCTHHHHHHHHHH--HHHHTCH--HHHHHHHHHH-HHHSS-CCHHHHHH
T ss_pred hhhhhhh-------------------HHHHhcccHHHHHHHHHH--HHHHhhh--hHHHhcchHH-HHhcC-CCccchhh
Confidence 0000000 000000111111110000 0000000 0000011100 00000 00000111
Q ss_pred ccchhHHHHHHHHHhHhhhhhhhhccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcCCCCccccc
Q 007637 378 FTVFTIITVTLWIAIYDRAVVPILVKFTGHPRGLSPKMRMGIGLLLSAVSMASAAVVENKRRKFAIDQGLVDEPQKVMDM 457 (595)
Q Consensus 378 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (595)
......+..++.. .+...+.+|.++| +.+..+...+++++..++..... ...
T Consensus 317 ~~~~~~~~~~~~~----~~~~~l~dr~Grr-------~~~~~~~~~~~~~~~~l~~~~~~-----------------~~~ 368 (491)
T 4gc0_A 317 QTIIVGVINLTFT----VLAIMTVDKFGRK-------PLQIIGALGMAIGMFSLGTAFYT-----------------QAP 368 (491)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHCSH-------HHHHHHHHHHHHHHHHHHHHHHT-----------------TCC
T ss_pred HHHHHHHHHHHHH----HHHHHHHHhhcCc-------chhccchHHHHHHHHHHHHHHhc-----------------ccc
Confidence 1112222222222 2334456777666 46667777777766666544310 011
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcccccCCCC
Q 007637 458 SAMWLIPQFSLIGLAEAFNAIGQIEFYYSQLPKSMSSMAMAIFTLGMAVANLLGGLLVKIVDRVTRKHGKESWLSSNLNK 537 (595)
Q Consensus 458 s~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~~g~~l~~~i~~~~~~~~~~~w~~~~~~~ 537 (595)
+...++..+++.........+..+.+..|.+|.+.|++++|+.+..+.+++.+++.+.+.+.+.. |.. ..
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-------~~~---~~ 438 (491)
T 4gc0_A 369 GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-------WLV---AH 438 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-------HHH---HH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH---hh
Confidence 22222223233333334456778899999999999999999999999999999998888765421 100 00
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCC
Q 007637 538 GHLDYFYWLLMAMCLVNFGYFLVCCWAYGPSVDVAEMPT 576 (595)
Q Consensus 538 ~~~~~~f~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ 576 (595)
.+....|++++++++++.++.+++.+|+|+++.|+.+..
T Consensus 439 ~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~ 477 (491)
T 4gc0_A 439 FHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEAL 477 (491)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGG
T ss_pred hhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHH
Confidence 112356889999999999999999999999876654333
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.86 E-value=1.4e-21 Score=204.50 Aligned_cols=166 Identities=17% Similarity=0.183 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHH
Q 007637 36 FIIVNESFEKVASYGLLPNMIFYLMNGYHVEAANGASMLSIWSSISNFLAIVGAFLADSYMGRFWVILLGSFSSLLGTTT 115 (595)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~l~~~~ 115 (595)
.+....++..+......+.++.+ .+++|.++.+.+++.+.+.++..++.+++|+++||+ ||||++.++.++..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHH
Confidence 34445666666666666666654 678999999999999999999999999999999996 9999999999999999988
Q ss_pred HHHhcccCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhcccCCCCCCcchhhhHhhHHHHHH
Q 007637 116 LWSTAMIPQLKPAPCNQLVSSNCSSATPAQFAILLSSFALISIGAGCVRPCSIAFGADQLDNKDNPKNKRVLETFFNWYY 195 (595)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 195 (595)
+.++. +.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+
T Consensus 82 ~~~~~------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 130 (375)
T 2gfp_A 82 AVTTS------------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ-------LRHANSLLN 130 (375)
T ss_dssp HHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-------CCSHHHHHH
T ss_pred HHHhc------------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH-------HHHHHHHHH
Confidence 88765 67889999999999999999999999999998844 789999999
Q ss_pred HHHhhhhHHHHHHHHHhhcccchhHHHHHHHHHHHHHHH
Q 007637 196 ASTSVSGMLAFTIIVYIQDHLGWKIGFGVRAILMVLSTL 234 (595)
Q Consensus 196 ~~~~~g~~~~p~~~~~l~~~~g~~~~f~~~~~~~~~~~~ 234 (595)
...++|..++|.+++++.++.||++.|++.++..++..+
T Consensus 131 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 131 MGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988999999887766554444
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.85 E-value=1.4e-21 Score=208.46 Aligned_cols=387 Identities=11% Similarity=0.034 Sum_probs=213.9
Q ss_pred chhHHHHHHHHHHHHHhhhchHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Q 007637 32 RTMPFIIVNESFEKVASYGLLPNMIFYLMNGYHVEAANGASMLSIWSSISNFLAIVGAFLADSYMGRFWVILLGSFSSLL 111 (595)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~l 111 (595)
|..+......++...++....++++.|+++++|+++.+.+++.+.+.++..++++++|+++||+ ||||+++++.++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 4455555555666666677778999999999999999999999999999999999999999995 999999988876654
Q ss_pred HHHHH---HHhcccCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhcccCCCCCCcchhhhHh
Q 007637 112 GTTTL---WSTAMIPQLKPAPCNQLVSSNCSSATPAQFAILLSSFALISIGAGCVRPCSIAFGADQLDNKDNPKNKRVLE 188 (595)
Q Consensus 112 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 188 (595)
+.... .+.... ...++..+++.+++.|...+...+...+..++.. +.++
T Consensus 86 ~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~~ 137 (417)
T 2cfq_A 86 MFAPFFIFIFGPLL-----------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS-----RRSN 137 (417)
T ss_dssp CHHHHHHHTHHHHH-----------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH-----HHHT
T ss_pred HHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh-----hhcc
Confidence 32111 111100 0012233444444444433333344433332211 3356
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhCccccccCCCCChhHHHHHHHHHHHhhcc
Q 007637 189 TFFNWYYASTSVSGMLAFTIIVYIQDHLGWKIGFGVRAILMVLSTLMFLFGSHLYIKVQPDKSLFTSFIQVIVASLRKIS 268 (595)
Q Consensus 189 ~~~~~~~~~~~~g~~~~p~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (595)
..++..+...++|..++|.+++++.+ .+|++.|++.++..++..+.. +..++. .++..+ ++
T Consensus 138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~-~~~~~~--~~~~~~--------------~~- 198 (417)
T 2cfq_A 138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLL-FFAKTD--APSSAT--------------VA- 198 (417)
T ss_dssp CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHS-CSSCCC--CSCSSC--------------SS-
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHH-HHcCcc--cccccc--------------cc-
Confidence 77777777889999999999999886 589999987665433322222 211111 000000 00
Q ss_pred ccCCCCCccccccCCCCccCCCCchhhhhhhhcccCCCCCCCCCCCCCCCCccccchhhhhhhHHHhHHhhhhhhHhhhh
Q 007637 269 LYPSSNTVNYYHAKDSNYVTPTDNLRFLNKACMIENPEEDLNPDGTASNPWKLCSIGQVESLKALLRITPMCSTGIIILL 348 (595)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 348 (595)
+++ + . .++..+..+.. +.-+.|.++............+.
T Consensus 199 ----~~~----~-~------~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~ 237 (417)
T 2cfq_A 199 ----NAV----G-A------NHSAFSLKLAL--------------------------ELFRQPKLWFLSLYVIGVSCTYD 237 (417)
T ss_dssp ----SSS----S-S------CCCCCCHHHHH--------------------------HHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ----ccc----c-c------ccccccHHHHH--------------------------HHhcCCchhhHHHHHHHHHHHHH
Confidence 000 0 0 00000000000 00011222221111111111111
Q ss_pred hccccceeeeeccccCCCCCCCccccc---ccccchhHHHHHHHHHhHhhhhhhhhccccCCCCCCCchHHHHHHHHHHH
Q 007637 349 SLNQQTFATLQAKTMDRHISPSFQIPA---GSFTVFTIITVTLWIAIYDRAVVPILVKFTGHPRGLSPKMRMGIGLLLSA 425 (595)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~l~~ 425 (595)
.+.+ .+..+.....+.. ..+. +....++.+...+...+ ..++.||+++| +.+..+.++.+
T Consensus 238 ~~~~-~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~----~g~l~dr~g~~-------~~l~~~~~~~~ 300 (417)
T 2cfq_A 238 VFDQ-QFANFFTSFFATG-----EQGTRVFGYVTTMGELLNASIMFF----APLIINRIGGK-------NALLLAGTIMS 300 (417)
T ss_dssp HHHH-HHHHHHHHTSSSH-----HHHTHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCHH-------HHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHhcc-----CCChhHHHHHHHHHHHHHHHHHHH----HHHHHHHhcHH-------HHHHHHHHHHH
Confidence 1111 0101111111100 0111 11222222222223333 33345665444 45666666666
Q ss_pred HHHHHHHHHHHhhhhhhhccCCcCCCCccccchHHHHHHHHHHHHHHHHHHhhhHHHHHhccCCcchhhHHHHH-HHHHH
Q 007637 426 VSMASAAVVENKRRKFAIDQGLVDEPQKVMDMSAMWLIPQFSLIGLAEAFNAIGQIEFYYSQLPKSMSSMAMAI-FTLGM 504 (595)
Q Consensus 426 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl-~~~~~ 504 (595)
+++...++. .+.+.++...++.+++.....+..+.+..|.+|++.||+++|+ ++..+
T Consensus 301 ~~~~~~~~~----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 358 (417)
T 2cfq_A 301 VRIIGSSFA----------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFK 358 (417)
T ss_dssp HHHHHHTTC----------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHh----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 655444321 2445555555666777667777788999999999999999998 48888
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCcccccCCCCchhhHHHHHHHHHHHHHHHHHHHhh
Q 007637 505 AVANLLGGLLVKIVDRVTRKHGKESWLSSNLNKGHLDYFYWLLMAMCLVNFGYFLVCC 562 (595)
Q Consensus 505 ~lg~~~g~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~l~~~v~~~~~~ 562 (595)
.+|+.+++.+.|.+.+.. ++...|.+.+++++++.++.+...
T Consensus 359 ~lg~~~gp~l~G~l~~~~----------------g~~~~f~~~~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 359 QLAMIFMSVLAGNMYESI----------------GFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHTHHHHTHHHHS----------------HHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred hHHHHHhhhhHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999876522 245678888888887776655443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.45 E-value=1.3e-12 Score=139.21 Aligned_cols=178 Identities=13% Similarity=0.139 Sum_probs=147.9
Q ss_pred chhHHHHHHHHHHHHHhhhchHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhccc--chhHHHHHHHHHH
Q 007637 32 RTMPFIIVNESFEKVASYGLLPNMIFYLMNGYHVEAANGASMLSIWSSISNFLAIVGAFLADSYM--GRFWVILLGSFSS 109 (595)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~--Grr~~~~~~~~~~ 109 (595)
|.++...+..++....++.+..+++.|+.+.+|++..+.+++.+...++..++.+++|+++|| + |||+.+.++.++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 556667777888888888899999999998899999999999999999999999999999999 7 9999888877665
Q ss_pred H-HHHHHHHHhcccCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhcccCCCCCCcchhhhHh
Q 007637 110 L-LGTTTLWSTAMIPQLKPAPCNQLVSSNCSSATPAQFAILLSSFALISIGAGCVRPCSIAFGADQLDNKDNPKNKRVLE 188 (595)
Q Consensus 110 ~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 188 (595)
. ++.+++.+.. ..+.+.+.+..++.|++.+...+...+++.|.+|+ +.|+
T Consensus 331 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g 381 (451)
T 1pw4_A 331 VTIATIVYWMNP----------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK-------KAAG 381 (451)
T ss_dssp HHHHHHHTTSCC----------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-------THHH
T ss_pred HHHHHHHHHHhc----------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch-------hhhh
Confidence 5 5544433321 11456677777888998888888888999999998 4589
Q ss_pred hHHHHHHHHHhh-hhHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 007637 189 TFFNWYYASTSV-SGMLAFTIIVYIQDHLGWKIGFGVRAILMVLSTLMFLFG 239 (595)
Q Consensus 189 ~~~~~~~~~~~~-g~~~~p~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 239 (595)
+++++.+...++ |..++|.+.|++.+..||+..|++.+++.+++.+..++.
T Consensus 382 ~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 382 TAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999998887777666655543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.38 E-value=4.5e-12 Score=134.66 Aligned_cols=166 Identities=13% Similarity=0.061 Sum_probs=134.0
Q ss_pred chhHHHHHHHHHHHHHhhhchHHHHHH-hhhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Q 007637 32 RTMPFIIVNESFEKVASYGLLPNMIFY-LMNGYHVEAANGASMLSIWSSISNFLAIVGAFLADSYMGRFWVILLGSFSSL 110 (595)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 110 (595)
|.++......++.....+.+..+++.| +++.+|++..+++.+.+...++..++.+++|+++||+ |||+++.++.++.+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 456666667777777788888999999 8888899999999999999999999999999999995 99999999998888
Q ss_pred HHHHHHHHhcccCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhcccCCCCCCcchhhhHhhH
Q 007637 111 LGTTTLWSTAMIPQLKPAPCNQLVSSNCSSATPAQFAILLSSFALISIGAGCVRPCSIAFGADQLDNKDNPKNKRVLETF 190 (595)
Q Consensus 111 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 190 (595)
++.+++.+.. +... .+..++.+++.+...|...++..|.+|++ ++.+
T Consensus 337 ~~~~~~~~~~------------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--------~~~~ 383 (438)
T 3o7q_A 337 ALCLISAFAG------------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD--------TKYG 383 (438)
T ss_dssp HHHHHHHHCC------------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG--------HHHH
T ss_pred HHHHHHHHcC------------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc--------ccch
Confidence 8877766543 2333 34447788999999999999988888862 4555
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhhcccc-hhHHHHHHHHHHHHH
Q 007637 191 FNWYYASTSVSGMLAFTIIVYIQDHLG-WKIGFGVRAILMVLS 232 (595)
Q Consensus 191 ~~~~~~~~~~g~~~~p~~~~~l~~~~g-~~~~f~~~~~~~~~~ 232 (595)
.++.. ...+|+.++|.+.|++.+..| ++..|++.+++.++.
T Consensus 384 ~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 384 SSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 55544 566999999999999999988 999998766554433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.25 E-value=3.9e-11 Score=127.34 Aligned_cols=167 Identities=7% Similarity=-0.005 Sum_probs=123.5
Q ss_pred HHHHHHhhhchHHHHHHhhhhcCC---chhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007637 42 SFEKVASYGLLPNMIFYLMNGYHV---EAANGASMLSIWSSISNFLAIVGAFLADSYMGRFWVILLGSFSSLLGTTTLWS 118 (595)
Q Consensus 42 ~~~~~~~~~~~~~l~~yl~~~l~~---s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~l~~~~~~~ 118 (595)
++....++....+++.|+.+.++. +....+...++..++..++.+++|+++||+ |||+++..+.++.+++..++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~ 308 (417)
T 2cfq_A 230 IGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSF 308 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455556688888776653 344556777777788888999999999995 9999999888877776655543
Q ss_pred hcccCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhcccCCCCCCcchhhhHhhHHHHH-HHH
Q 007637 119 TAMIPQLKPAPCNQLVSSNCSSATPAQFAILLSSFALISIGAGCVRPCSIAFGADQLDNKDNPKNKRVLETFFNWY-YAS 197 (595)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~ 197 (595)
.. +...+++..++.+++.+...+...++..|.+|+ +.|++++++. +..
T Consensus 309 ~~------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~ 357 (417)
T 2cfq_A 309 AT------------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV-------RFSATIYLVCFCFF 357 (417)
T ss_dssp CC------------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH-------HHHHHHHHHHHTTT
T ss_pred hc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHH
Confidence 22 344555666666777666666678899999998 6689999984 677
Q ss_pred HhhhhHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhC
Q 007637 198 TSVSGMLAFTIIVYIQDHLGWKIGFGVRAILMVLSTLMFLFGS 240 (595)
Q Consensus 198 ~~~g~~~~p~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 240 (595)
.++|+.++|.++|++.+..|+...|.+.+++.+++.+..++..
T Consensus 358 ~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 358 KQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 7899999999999999888899999887777666665544433
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.07 E-value=5.3e-10 Score=120.67 Aligned_cols=188 Identities=10% Similarity=0.024 Sum_probs=136.3
Q ss_pred chhHHHHHHHHHHHHHhhhchHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHH-----HHH
Q 007637 32 RTMPFIIVNESFEKVASYGLLPNMIFYLMNGYHVEAANGASMLSIWSSISNFLAIVGAFLADSYMGRFWVIL-----LGS 106 (595)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~-----~~~ 106 (595)
...+......++....+......++.|+.+.++.+..+.+.+.+...++..++.++.|+++||+ |||+... ++.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~ 361 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGL 361 (491)
T ss_dssp TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHH
Confidence 3444555556666677777788899999988898878888888999999999999999999995 9986654 666
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhcccCCCCCCcchhhh
Q 007637 107 FSSLLGTTTLWSTAMIPQLKPAPCNQLVSSNCSSATPAQFAILLSSFALISIGAGCVRPCSIAFGADQLDNKDNPKNKRV 186 (595)
Q Consensus 107 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (595)
++.+++..++.+...... .....+...+.+..++.|++.+...+...++..|.+|++.
T Consensus 362 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------- 419 (491)
T 4aps_A 362 MFAGLSFLLMAIPGALYG---------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------- 419 (491)
T ss_dssp HHHHHHHTTTHHHHHHCC---------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC-------
T ss_pred HHHHHHHHHHHHHHHhcC---------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH-------
Confidence 666666555443220000 0011245667778888999999999999999999999944
Q ss_pred HhhHHHHHHHHHhhhhHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhCccc
Q 007637 187 LETFFNWYYASTSVSGMLAFTIIVYIQDHLGWKIGFGVRAILMVLSTLMFLFGSHLY 243 (595)
Q Consensus 187 r~~~~~~~~~~~~~g~~~~p~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 243 (595)
|+++.++++...++|..++|.+.+++.+. ++...|.+.+++.+++.+..++..++.
T Consensus 420 ~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 420 NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999888764 666777777766666666655554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.02 E-value=2e-09 Score=116.06 Aligned_cols=186 Identities=10% Similarity=0.089 Sum_probs=125.9
Q ss_pred chhHHHHHHHHHHHHHhhhchHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Q 007637 32 RTMPFIIVNESFEKVASYGLLPNMIFYLMNGYHVEAANGASMLSIWSSISNFLAIVGAFLADSYMGRFWVILLGSFSSLL 111 (595)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~l 111 (595)
+.........++..+..+........++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~ 354 (491)
T 4gc0_A 276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAI 354 (491)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHH
Confidence 3344444444444443333344445556677888888888888888889999999999999995 999999999888777
Q ss_pred HHHHHHHhcccCCCCCCCCCccccCCCCCCCchhHHHHH-HHHHHHHHhccCCccchhhhhcccCCCCCCcchhhhHhhH
Q 007637 112 GTTTLWSTAMIPQLKPAPCNQLVSSNCSSATPAQFAILL-SSFALISIGAGCVRPCSIAFGADQLDNKDNPKNKRVLETF 190 (595)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 190 (595)
+...+....... ......+. +.....+++. ...|....+.+|.+|. +.|+++
T Consensus 355 ~~~~l~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt-------~~R~~~ 407 (491)
T 4gc0_A 355 GMFSLGTAFYTQ-------------------APGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPN-------AIRGKA 407 (491)
T ss_dssp HHHHHHHHHHTT-------------------CCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCT-------TTHHHH
T ss_pred HHHHHHHHHhcc-------------------cchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCH-------hHHHHH
Confidence 776655433111 11222222 2222233333 3456778899999999 559999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhhc------ccchhHHHHHHHHHHHHHHHHHHhhCccccc
Q 007637 191 FNWYYASTSVSGMLAFTIIVYIQD------HLGWKIGFGVRAILMVLSTLMFLFGSHLYIK 245 (595)
Q Consensus 191 ~~~~~~~~~~g~~~~p~~~~~l~~------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 245 (595)
.++......+++.+++.+.+.+.+ ..++...|++.+++.+++.+..+++.|+.+.
T Consensus 408 ~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 408 LAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 999998888998888877776643 2456667777777777777777777776544
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.75 E-value=1.3e-09 Score=113.19 Aligned_cols=163 Identities=9% Similarity=-0.053 Sum_probs=123.9
Q ss_pred chhHHHHHHHHHHHHHhhhchHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH-HH
Q 007637 32 RTMPFIIVNESFEKVASYGLLPNMIFYLMNGYHVEAANGASMLSIWSSISNFLAIVGAFLADSYMGRFWVILLGSFS-SL 110 (595)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~-~~ 110 (595)
|..+......++.....+.+..+++.|+++.+|.++.+.+.+.+...++..++.++.|+++||+ ||+ +..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 4455566667777778888888889999888999999999999999999999999999999995 872 2223322 22
Q ss_pred HHHH--HHHHhcccCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhcccCCCCCCcchhhhHh
Q 007637 111 LGTT--TLWSTAMIPQLKPAPCNQLVSSNCSSATPAQFAILLSSFALISIGAGCVRPCSIAFGADQLDNKDNPKNKRVLE 188 (595)
Q Consensus 111 l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 188 (595)
.+.. ...... ..+.+.+++..++.+++.+...+...++..|.+| ++ |+
T Consensus 276 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~-------~g 325 (375)
T 2gfp_A 276 AGLLMWIPDWFG----------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL-------AG 325 (375)
T ss_dssp TSSSSSHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH-------HH
T ss_pred HHHHHHHHhhhc----------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc-------cc
Confidence 2221 111100 0145566677888899999999999999999886 22 89
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHhhcccchhHHHHHHHH
Q 007637 189 TFFNWYYASTSVSGMLAFTIIVYIQDHLGWKIGFGVRAI 227 (595)
Q Consensus 189 ~~~~~~~~~~~~g~~~~p~~~~~l~~~~g~~~~f~~~~~ 227 (595)
++.++.+...++|..++|.+.+.+.+..+|...+.+..+
T Consensus 326 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 326 TAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 999999999999999999999999887788877776443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.09 E-value=1.3e-05 Score=86.77 Aligned_cols=111 Identities=16% Similarity=0.092 Sum_probs=84.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcCCCCccccchHHHHHHHHHHHHHHHHHHhhhHHHHHhccCCcch
Q 007637 413 PKMRMGIGLLLSAVSMASAAVVENKRRKFAIDQGLVDEPQKVMDMSAMWLIPQFSLIGLAEAFNAIGQIEFYYSQLPKSM 492 (595)
Q Consensus 413 ~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~ 492 (595)
+++.+.++.++.+++.+.+.+.. .+.++++...++.|++.+...+...+++.|.+|++.
T Consensus 84 ~r~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 142 (524)
T 2xut_A 84 KYNTILWLSLIYCVGHAFLAIFE---------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN 142 (524)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTS---------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT
T ss_pred chHHHHHHHHHHHHHHHHHHHhc---------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc
Confidence 33577788887777777665421 266777788899999999999999999999999999
Q ss_pred hhHHHHH---HHHHHHHHHHHHHHHHHHHhhhhccCCCCcccccCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 007637 493 SSMAMAI---FTLGMAVANLLGGLLVKIVDRVTRKHGKESWLSSNLNKGHLDYFYWLLMAMCLVNFGYFLV 560 (595)
Q Consensus 493 rg~~~gl---~~~~~~lg~~~g~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~l~~~v~~~~ 560 (595)
|+++.+. .+....+|..+++.+.+.+.+.. + .++.|++.+++.+++.+.++.
T Consensus 143 r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------g----------~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 143 KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF------G----------AAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS------C----------HHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------c----------HHHHHHHHHHHHHHHHHHHHH
Confidence 9877666 88888999999998887766421 2 356788777777666555443
Done!