Query 007640
Match_columns 595
No_of_seqs 760 out of 3297
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 06:50:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007640.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007640hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 7.1E-37 2.4E-41 330.9 44.2 434 132-580 96-588 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.9E-35 6.5E-40 319.6 41.2 414 154-580 82-554 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.6E-27 8.8E-32 241.6 47.8 384 162-557 5-388 (388)
4 4g26_A Pentatricopeptide repea 100.0 2.1E-29 7E-34 262.7 26.1 185 370-554 29-222 (501)
5 4g26_A Pentatricopeptide repea 100.0 1.7E-29 5.8E-34 263.3 25.3 187 333-519 27-222 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 9.3E-27 3.2E-31 237.4 44.1 369 197-576 5-373 (388)
7 2gw1_A Mitochondrial precursor 99.9 8.5E-24 2.9E-28 223.6 36.9 412 156-577 6-484 (514)
8 3fp2_A TPR repeat-containing p 99.9 3.8E-22 1.3E-26 212.2 40.2 407 156-575 25-495 (537)
9 2y4t_A DNAJ homolog subfamily 99.9 4.8E-22 1.7E-26 206.5 37.7 302 154-465 24-357 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 9.7E-22 3.3E-26 204.2 39.8 339 176-549 12-370 (450)
11 2gw1_A Mitochondrial precursor 99.9 1.8E-21 6E-26 205.8 35.6 396 130-537 16-479 (514)
12 3fp2_A TPR repeat-containing p 99.9 3.7E-19 1.3E-23 189.1 40.0 391 130-537 35-492 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 2.9E-18 1E-22 171.7 41.4 327 192-552 4-350 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 2.8E-18 9.5E-23 171.8 39.7 320 225-577 2-341 (359)
15 2xm6_A Protein corresponding t 99.9 1.6E-16 5.6E-21 166.8 53.3 353 154-537 37-433 (490)
16 2xm6_A Protein corresponding t 99.9 1E-16 3.5E-21 168.4 50.9 366 174-573 25-434 (490)
17 3hym_B Cell division cycle pro 99.8 7.9E-18 2.7E-22 166.6 33.6 292 260-559 21-322 (330)
18 2ooe_A Cleavage stimulation fa 99.8 3.9E-16 1.3E-20 165.6 47.3 411 154-573 11-494 (530)
19 3hym_B Cell division cycle pro 99.8 1.7E-17 5.8E-22 164.2 32.7 292 224-523 20-321 (330)
20 1fch_A Peroxisomal targeting s 99.8 4E-18 1.4E-22 171.7 25.9 266 298-570 66-358 (368)
21 1fch_A Peroxisomal targeting s 99.8 2.1E-17 7.1E-22 166.5 27.3 304 203-532 37-355 (368)
22 2ooe_A Cleavage stimulation fa 99.8 3.9E-15 1.3E-19 158.0 42.2 387 179-575 2-458 (530)
23 1xi4_A Clathrin heavy chain; a 99.8 1E-14 3.4E-19 161.1 42.9 403 114-565 944-1378(1630)
24 4eqf_A PEX5-related protein; a 99.8 6.9E-17 2.4E-21 162.7 23.9 232 225-463 64-307 (365)
25 4g1t_A Interferon-induced prot 99.8 1.9E-15 6.4E-20 157.8 35.1 370 188-575 48-463 (472)
26 1xi4_A Clathrin heavy chain; a 99.8 2.9E-14 9.8E-19 157.6 45.1 398 117-572 979-1415(1630)
27 4eqf_A PEX5-related protein; a 99.8 1.4E-16 4.7E-21 160.5 25.2 276 261-569 65-354 (365)
28 3cv0_A Peroxisome targeting si 99.8 1.9E-16 6.6E-21 156.3 25.1 279 263-570 23-314 (327)
29 3cv0_A Peroxisome targeting si 99.7 7.1E-16 2.4E-20 152.2 26.9 278 227-533 22-312 (327)
30 1b89_A Protein (clathrin heavy 99.7 1.5E-16 5.1E-21 158.3 21.5 288 127-460 10-305 (449)
31 1b89_A Protein (clathrin heavy 99.7 2.9E-16 9.8E-21 156.3 23.5 284 167-494 14-304 (449)
32 4g1t_A Interferon-induced prot 99.7 3.1E-15 1.1E-19 156.1 30.8 366 154-537 49-460 (472)
33 3mkr_A Coatomer subunit epsilo 99.7 2.3E-15 7.7E-20 146.2 27.5 251 164-431 7-264 (291)
34 3mkr_A Coatomer subunit epsilo 99.7 3.4E-15 1.2E-19 145.0 27.5 253 268-537 6-265 (291)
35 3spa_A Mtrpol, DNA-directed RN 99.7 8.5E-18 2.9E-22 179.9 7.5 117 192-308 128-248 (1134)
36 3spa_A Mtrpol, DNA-directed RN 99.7 3.2E-17 1.1E-21 175.5 11.4 115 438-552 128-246 (1134)
37 3e4b_A ALGK; tetratricopeptide 99.7 1.1E-14 3.9E-19 150.7 24.6 377 161-572 8-422 (452)
38 3uq3_A Heat shock protein STI1 99.6 6.6E-14 2.3E-18 132.8 25.5 225 334-572 7-237 (258)
39 2pl2_A Hypothetical conserved 99.6 3.9E-14 1.4E-18 131.2 22.9 199 365-569 3-212 (217)
40 1ouv_A Conserved hypothetical 99.6 1.9E-12 6.6E-17 124.3 33.5 226 331-574 5-254 (273)
41 2pl2_A Hypothetical conserved 99.6 5.2E-14 1.8E-18 130.4 20.9 200 153-359 2-212 (217)
42 3uq3_A Heat shock protein STI1 99.6 1.7E-13 5.8E-18 130.0 24.2 223 157-394 6-234 (258)
43 3e4b_A ALGK; tetratricopeptide 99.6 1.9E-13 6.7E-18 141.4 23.9 348 196-573 8-389 (452)
44 3u4t_A TPR repeat-containing p 99.6 7.7E-13 2.6E-17 126.8 25.5 232 299-535 6-249 (272)
45 3u4t_A TPR repeat-containing p 99.6 7E-13 2.4E-17 127.1 25.0 242 334-579 5-258 (272)
46 2ho1_A Type 4 fimbrial biogene 99.6 1.9E-12 6.5E-17 122.5 26.4 201 332-536 37-238 (252)
47 1ouv_A Conserved hypothetical 99.6 1.3E-11 4.4E-16 118.5 32.5 224 295-537 5-252 (273)
48 2ho1_A Type 4 fimbrial biogene 99.5 2.4E-12 8.2E-17 121.8 25.7 201 156-361 37-238 (252)
49 4e6h_A MRNA 3'-END-processing 99.5 2.3E-10 7.8E-15 122.7 43.1 419 154-576 64-575 (679)
50 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.5E-13 8.7E-18 130.3 18.5 28 508-535 216-243 (275)
51 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.7E-13 1.3E-17 129.1 19.6 248 272-530 16-269 (275)
52 2vq2_A PILW, putative fimbrial 99.5 4.9E-12 1.7E-16 117.0 26.5 202 331-535 7-210 (225)
53 2q7f_A YRRB protein; TPR, prot 99.5 4.4E-13 1.5E-17 126.0 19.5 199 332-535 23-221 (243)
54 2vq2_A PILW, putative fimbrial 99.5 5.2E-12 1.8E-16 116.9 26.6 201 297-501 9-211 (225)
55 2h6f_A Protein farnesyltransfe 99.5 2.7E-12 9.4E-17 128.9 26.4 249 155-412 96-363 (382)
56 2q7f_A YRRB protein; TPR, prot 99.5 7.1E-13 2.4E-17 124.5 20.5 202 154-361 21-222 (243)
57 2h6f_A Protein farnesyltransfe 99.5 3.4E-12 1.1E-16 128.2 25.7 246 298-552 99-363 (382)
58 4a1s_A PINS, partner of inscut 99.5 8.4E-13 2.9E-17 134.9 18.8 280 263-571 50-372 (411)
59 3sf4_A G-protein-signaling mod 99.5 1.8E-12 6.3E-17 131.8 19.8 304 258-562 6-367 (406)
60 3sf4_A G-protein-signaling mod 99.5 1.5E-12 5.3E-17 132.4 19.1 205 154-359 7-254 (406)
61 4a1s_A PINS, partner of inscut 99.5 1.6E-12 5.5E-17 132.8 18.3 203 156-359 48-290 (411)
62 3vtx_A MAMA; tetratricopeptide 99.4 1.9E-11 6.6E-16 109.5 22.9 169 401-573 4-172 (184)
63 3ro2_A PINS homolog, G-protein 99.4 4.1E-12 1.4E-16 125.2 19.9 277 264-572 8-333 (338)
64 2ond_A Cleavage stimulation fa 99.4 2E-10 6.8E-15 112.4 30.6 223 349-575 33-274 (308)
65 3ro2_A PINS homolog, G-protein 99.4 5.5E-12 1.9E-16 124.3 19.4 275 229-535 8-331 (338)
66 3ulq_A Response regulator aspa 99.4 1.8E-11 6E-16 123.9 22.8 232 338-572 109-369 (383)
67 2ond_A Cleavage stimulation fa 99.4 2.5E-10 8.5E-15 111.7 28.9 218 173-395 33-269 (308)
68 4abn_A Tetratricopeptide repea 99.4 1.8E-11 6.1E-16 127.5 20.8 194 366-564 101-314 (474)
69 3ulq_A Response regulator aspa 99.4 5.8E-11 2E-15 120.1 23.3 162 267-428 109-290 (383)
70 3nf1_A KLC 1, kinesin light ch 99.4 3.1E-12 1.1E-16 124.9 13.1 202 369-571 71-307 (311)
71 4e6h_A MRNA 3'-END-processing 99.4 5.7E-09 2E-13 111.8 39.2 396 172-573 48-535 (679)
72 3vtx_A MAMA; tetratricopeptide 99.4 1.2E-10 4E-15 104.4 21.5 166 155-324 4-169 (184)
73 4abn_A Tetratricopeptide repea 99.3 4.5E-11 1.6E-15 124.4 20.2 214 312-532 84-317 (474)
74 3nf1_A KLC 1, kinesin light ch 99.3 8.7E-12 3E-16 121.7 13.6 171 225-395 26-223 (311)
75 3as5_A MAMA; tetratricopeptide 99.3 2.1E-10 7.3E-15 102.1 20.9 168 403-574 9-176 (186)
76 3q15_A PSP28, response regulat 99.3 3.9E-10 1.3E-14 113.8 24.3 229 338-570 107-364 (378)
77 1hz4_A MALT regulatory protein 99.3 2.2E-09 7.6E-14 107.9 28.9 200 336-535 97-321 (373)
78 3q15_A PSP28, response regulat 99.3 1.3E-09 4.4E-14 109.9 26.6 230 302-535 107-364 (378)
79 1hz4_A MALT regulatory protein 99.3 2.6E-09 8.9E-14 107.4 28.6 235 159-393 17-279 (373)
80 4gyw_A UDP-N-acetylglucosamine 99.2 3.5E-10 1.2E-14 122.6 21.1 166 401-570 8-173 (723)
81 3as5_A MAMA; tetratricopeptide 99.2 2E-09 6.9E-14 95.7 22.7 164 192-360 9-172 (186)
82 4i17_A Hypothetical protein; T 99.2 1.4E-09 4.9E-14 100.9 20.7 200 365-576 5-214 (228)
83 4i17_A Hypothetical protein; T 99.2 5.7E-09 2E-13 96.8 22.8 207 330-548 5-220 (228)
84 4gyw_A UDP-N-acetylglucosamine 99.2 7.6E-10 2.6E-14 120.0 19.0 167 154-324 7-173 (723)
85 3edt_B KLC 2, kinesin light ch 99.1 3.5E-10 1.2E-14 108.4 13.7 228 343-571 12-281 (283)
86 3edt_B KLC 2, kinesin light ch 99.1 8.2E-10 2.8E-14 105.7 14.6 135 226-360 43-197 (283)
87 1qqe_A Vesicular transport pro 99.1 5.9E-09 2E-13 100.9 18.6 159 341-499 46-226 (292)
88 2fo7_A Synthetic consensus TPR 99.0 1.7E-08 5.8E-13 84.2 18.5 132 439-573 3-134 (136)
89 3mv2_B Coatomer subunit epsilo 99.0 1.5E-07 5E-12 89.9 25.2 242 165-431 22-282 (310)
90 3mv2_B Coatomer subunit epsilo 99.0 2.5E-07 8.5E-12 88.2 25.8 244 200-467 22-283 (310)
91 1qqe_A Vesicular transport pro 99.0 2.8E-08 9.7E-13 96.1 19.8 166 158-323 39-226 (292)
92 2uy1_A Cleavage stimulation fa 99.0 1.4E-06 4.8E-11 90.5 32.9 370 156-570 15-412 (493)
93 3rjv_A Putative SEL1 repeat pr 99.0 9.8E-08 3.3E-12 87.4 21.4 175 386-572 5-198 (212)
94 2fo7_A Synthetic consensus TPR 98.9 2.8E-08 9.6E-13 82.8 16.0 128 158-288 3-130 (136)
95 3qky_A Outer membrane assembly 98.9 5.5E-08 1.9E-12 92.3 19.1 189 366-574 14-227 (261)
96 3urz_A Uncharacterized protein 98.9 4.5E-08 1.6E-12 89.4 17.2 192 155-373 3-196 (208)
97 3qky_A Outer membrane assembly 98.9 3.1E-08 1E-12 94.0 16.5 188 154-361 13-224 (261)
98 3rjv_A Putative SEL1 repeat pr 98.9 1.6E-07 5.6E-12 85.9 20.3 175 351-537 5-198 (212)
99 2vsy_A XCC0866; transferase, g 98.9 5.3E-08 1.8E-12 103.8 19.5 154 380-537 2-158 (568)
100 2pzi_A Probable serine/threoni 98.9 2.3E-08 7.8E-13 108.8 16.6 171 378-554 402-580 (681)
101 3urz_A Uncharacterized protein 98.9 5.2E-08 1.8E-12 89.0 16.3 171 368-546 5-194 (208)
102 2yhc_A BAMD, UPF0169 lipoprote 98.9 3.4E-07 1.2E-11 84.6 21.6 192 366-577 3-219 (225)
103 2uy1_A Cleavage stimulation fa 98.8 5.6E-06 1.9E-10 85.9 31.5 358 134-535 28-412 (493)
104 3dra_A Protein farnesyltransfe 98.8 5.7E-07 2E-11 86.6 22.0 222 349-575 50-292 (306)
105 2pzi_A Probable serine/threoni 98.8 2.9E-08 1E-12 107.9 14.3 131 225-360 432-562 (681)
106 3qou_A Protein YBBN; thioredox 98.8 1.1E-07 3.6E-12 91.8 16.5 166 401-570 116-283 (287)
107 2r5s_A Uncharacterized protein 98.8 1.2E-07 4E-12 84.0 15.5 160 159-322 9-170 (176)
108 2r5s_A Uncharacterized protein 98.8 1.2E-07 4E-12 84.0 15.4 161 194-358 9-170 (176)
109 3qou_A Protein YBBN; thioredox 98.8 2.4E-07 8.4E-12 89.2 18.8 166 154-323 115-282 (287)
110 3u3w_A Transcriptional activat 98.8 2.4E-06 8.1E-11 82.4 25.5 165 407-571 80-266 (293)
111 4ga2_A E3 SUMO-protein ligase 98.8 2.5E-08 8.4E-13 85.8 9.9 141 412-556 7-148 (150)
112 3dra_A Protein farnesyltransfe 98.8 3.4E-06 1.2E-10 81.2 25.5 223 167-395 43-286 (306)
113 2ifu_A Gamma-SNAP; membrane fu 98.8 1.5E-07 5.1E-12 91.7 16.0 155 404-563 78-253 (307)
114 2vsy_A XCC0866; transferase, g 98.7 2.6E-07 8.9E-12 98.4 18.6 152 170-325 3-157 (568)
115 2yhc_A BAMD, UPF0169 lipoprote 98.7 1.7E-06 5.9E-11 79.8 21.0 202 191-432 4-214 (225)
116 2ifu_A Gamma-SNAP; membrane fu 98.7 9.8E-08 3.3E-12 93.0 12.4 201 345-573 4-225 (307)
117 2qfc_A PLCR protein; TPR, HTH, 98.7 2.6E-06 9E-11 82.1 22.0 166 404-570 77-265 (293)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.1E-06 3.8E-11 80.1 18.0 126 404-535 8-149 (213)
119 4ga2_A E3 SUMO-protein ligase 98.7 1.3E-07 4.6E-12 81.2 10.6 111 203-316 9-119 (150)
120 2c2l_A CHIP, carboxy terminus 98.6 2.7E-07 9.1E-12 88.6 13.6 197 366-573 3-201 (281)
121 3u3w_A Transcriptional activat 98.6 5.2E-06 1.8E-10 80.0 22.7 126 303-428 82-222 (293)
122 1a17_A Serine/threonine protei 98.6 2.5E-06 8.5E-11 74.0 16.9 131 438-571 14-146 (166)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.6 4.1E-06 1.4E-10 76.2 18.7 128 369-501 8-150 (213)
124 4gco_A Protein STI-1; structur 98.6 1.7E-06 5.8E-11 71.6 14.5 98 474-573 15-112 (126)
125 2c2l_A CHIP, carboxy terminus 98.6 3.6E-07 1.2E-11 87.7 11.8 195 154-360 2-198 (281)
126 3gw4_A Uncharacterized protein 98.6 9E-07 3.1E-11 79.8 13.8 156 379-535 4-175 (203)
127 4gco_A Protein STI-1; structur 98.5 3E-06 1E-10 70.1 15.4 109 438-549 14-122 (126)
128 3q7a_A Farnesyltransferase alp 98.5 2.8E-05 9.6E-10 75.6 24.4 222 345-571 67-331 (349)
129 3gyz_A Chaperone protein IPGC; 98.5 9E-07 3.1E-11 75.8 12.4 95 439-535 38-132 (151)
130 1a17_A Serine/threonine protei 98.5 2.3E-06 7.9E-11 74.2 15.3 129 156-287 13-143 (166)
131 3q7a_A Farnesyltransferase alp 98.5 5.1E-05 1.7E-09 73.8 25.0 176 166-347 64-257 (349)
132 1na0_A Designed protein CTPR3; 98.5 6.3E-06 2.1E-10 67.2 16.2 113 438-553 10-122 (125)
133 2vgx_A Chaperone SYCD; alterna 98.5 5.2E-07 1.8E-11 77.2 9.7 96 438-535 22-117 (148)
134 1na0_A Designed protein CTPR3; 98.5 3.8E-06 1.3E-10 68.5 14.6 113 156-271 9-121 (125)
135 2lni_A Stress-induced-phosphop 98.5 2.8E-06 9.4E-11 70.5 13.5 120 153-275 13-132 (133)
136 2vyi_A SGTA protein; chaperone 98.5 5E-06 1.7E-10 68.4 14.9 119 437-558 12-130 (131)
137 2e2e_A Formate-dependent nitri 98.5 1.7E-06 5.8E-11 76.3 12.6 121 413-536 21-144 (177)
138 4f3v_A ESX-1 secretion system 98.4 6.2E-06 2.1E-10 77.6 16.4 128 443-573 108-239 (282)
139 1p5q_A FKBP52, FK506-binding p 98.4 4.2E-06 1.5E-10 82.4 16.1 87 473-561 197-283 (336)
140 3gw4_A Uncharacterized protein 98.4 2.1E-06 7.3E-11 77.3 12.9 156 414-570 4-175 (203)
141 2vyi_A SGTA protein; chaperone 98.4 3.7E-06 1.3E-10 69.3 13.4 119 155-276 11-129 (131)
142 2qfc_A PLCR protein; TPR, HTH, 98.4 1.7E-05 5.9E-10 76.3 19.9 162 232-393 81-263 (293)
143 2lni_A Stress-induced-phosphop 98.4 4.4E-06 1.5E-10 69.2 13.7 117 436-555 15-131 (133)
144 2e2e_A Formate-dependent nitri 98.4 2.3E-06 7.8E-11 75.5 12.2 121 167-290 21-144 (177)
145 2kck_A TPR repeat; tetratricop 98.4 5.1E-06 1.7E-10 66.3 12.9 104 471-576 5-111 (112)
146 4f3v_A ESX-1 secretion system 98.4 2.1E-05 7.1E-10 74.0 18.1 140 404-548 104-247 (282)
147 3gyz_A Chaperone protein IPGC; 98.4 2.4E-06 8.2E-11 73.1 10.6 100 155-256 35-134 (151)
148 2vgx_A Chaperone SYCD; alterna 98.3 5.2E-06 1.8E-10 70.9 12.5 99 225-325 20-118 (148)
149 3sz7_A HSC70 cochaperone (SGT) 98.3 5.2E-06 1.8E-10 72.2 12.4 100 435-536 9-108 (164)
150 2xcb_A PCRH, regulatory protei 98.3 5.2E-06 1.8E-10 70.2 11.5 96 438-535 19-114 (142)
151 1p5q_A FKBP52, FK506-binding p 98.3 9.8E-06 3.3E-10 79.8 15.1 130 155-287 146-291 (336)
152 3upv_A Heat shock protein STI1 98.3 1.6E-05 5.3E-10 65.5 14.2 96 438-535 5-100 (126)
153 3dss_A Geranylgeranyl transfer 98.3 0.00043 1.5E-08 66.9 26.1 185 384-573 91-306 (331)
154 1elw_A TPR1-domain of HOP; HOP 98.3 1.1E-05 3.8E-10 65.0 12.4 96 438-535 5-100 (118)
155 1elw_A TPR1-domain of HOP; HOP 98.3 4.2E-05 1.5E-09 61.4 15.8 98 474-573 6-103 (118)
156 4gcn_A Protein STI-1; structur 98.3 9.4E-06 3.2E-10 67.2 11.8 96 439-535 10-111 (127)
157 3upv_A Heat shock protein STI1 98.3 1.1E-05 3.8E-10 66.4 12.2 99 156-256 4-102 (126)
158 3q49_B STIP1 homology and U bo 98.3 2.6E-05 8.7E-10 65.1 14.6 99 435-535 7-105 (137)
159 1hxi_A PEX5, peroxisome target 98.2 1.2E-05 3.9E-10 66.0 11.7 98 474-573 19-116 (121)
160 4gcn_A Protein STI-1; structur 98.2 2.8E-05 9.6E-10 64.2 13.8 98 474-572 10-113 (127)
161 2xcb_A PCRH, regulatory protei 98.2 2.6E-05 9E-10 65.8 13.8 110 213-325 6-115 (142)
162 2fbn_A 70 kDa peptidylprolyl i 98.2 3.2E-05 1.1E-09 69.5 15.0 96 473-570 89-185 (198)
163 3ro3_A PINS homolog, G-protein 98.2 1.2E-05 4E-10 69.0 11.2 133 439-571 11-158 (164)
164 3dss_A Geranylgeranyl transfer 98.2 0.00088 3E-08 64.7 25.3 248 273-552 41-319 (331)
165 3q49_B STIP1 homology and U bo 98.2 7.8E-05 2.7E-09 62.0 15.9 98 401-500 8-105 (137)
166 2fbn_A 70 kDa peptidylprolyl i 98.2 2.2E-05 7.4E-10 70.6 12.9 123 156-281 38-176 (198)
167 2dba_A Smooth muscle cell asso 98.2 4.9E-05 1.7E-09 64.1 14.5 98 436-536 27-128 (148)
168 2kck_A TPR repeat; tetratricop 98.1 1.1E-05 3.6E-10 64.4 9.5 98 157-256 7-107 (112)
169 4b4t_Q 26S proteasome regulato 98.1 0.00011 3.8E-09 74.8 19.2 197 339-535 11-244 (434)
170 3sz7_A HSC70 cochaperone (SGT) 98.1 5.3E-05 1.8E-09 65.6 14.1 98 226-325 11-108 (164)
171 2dba_A Smooth muscle cell asso 98.1 0.00012 4.1E-09 61.6 15.9 98 401-501 27-128 (148)
172 2xev_A YBGF; tetratricopeptide 98.1 3.5E-05 1.2E-09 63.4 12.1 92 443-536 8-105 (129)
173 1elr_A TPR2A-domain of HOP; HO 98.1 2.7E-05 9.2E-10 64.0 11.1 99 156-255 4-108 (131)
174 1elr_A TPR2A-domain of HOP; HO 98.1 4E-05 1.4E-09 62.9 12.0 110 439-551 6-121 (131)
175 4b4t_Q 26S proteasome regulato 98.1 9.2E-05 3.2E-09 75.4 17.2 196 163-358 11-242 (434)
176 1hxi_A PEX5, peroxisome target 98.0 2.7E-05 9.1E-10 63.7 9.6 95 159-255 20-114 (121)
177 3k9i_A BH0479 protein; putativ 98.0 1.1E-05 3.8E-10 65.5 6.1 86 450-536 3-90 (117)
178 1wao_1 Serine/threonine protei 97.9 2E-05 6.9E-10 81.5 9.3 117 447-566 16-134 (477)
179 2hr2_A Hypothetical protein; a 97.9 0.00014 4.9E-09 61.7 12.6 101 475-575 14-135 (159)
180 1dce_A Protein (RAB geranylger 97.9 0.00025 8.6E-09 74.7 17.4 162 417-582 44-232 (567)
181 3rkv_A Putative peptidylprolyl 97.9 8.7E-05 3E-09 64.1 11.4 100 437-537 11-127 (162)
182 3n71_A Histone lysine methyltr 97.9 2.3E-05 8E-10 80.7 8.9 138 447-584 319-477 (490)
183 3ro3_A PINS homolog, G-protein 97.9 9E-05 3.1E-09 63.2 11.5 133 227-359 10-156 (164)
184 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00014 4.9E-09 74.7 14.7 124 401-527 267-405 (457)
185 2xev_A YBGF; tetratricopeptide 97.9 0.00051 1.7E-08 56.2 15.5 93 478-572 8-106 (129)
186 1ihg_A Cyclophilin 40; ppiase 97.9 0.00014 4.9E-09 72.3 13.8 140 402-563 223-362 (370)
187 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.0001 3.5E-09 75.8 12.9 122 156-280 268-404 (457)
188 1ihg_A Cyclophilin 40; ppiase 97.8 0.00014 4.8E-09 72.4 13.0 120 157-278 224-358 (370)
189 1wao_1 Serine/threonine protei 97.8 3.9E-05 1.3E-09 79.4 8.7 121 162-285 12-134 (477)
190 1klx_A Cysteine rich protein B 97.8 0.00058 2E-08 57.1 14.4 110 452-572 10-127 (138)
191 3k9i_A BH0479 protein; putativ 97.7 4.8E-05 1.6E-09 61.7 6.6 84 204-288 3-88 (117)
192 3rkv_A Putative peptidylprolyl 97.7 0.00011 3.9E-09 63.3 9.1 99 156-255 11-126 (162)
193 2if4_A ATFKBP42; FKBP-like, al 97.7 6.7E-05 2.3E-09 73.8 8.3 153 402-575 179-332 (338)
194 1dce_A Protein (RAB geranylger 97.7 0.0013 4.6E-08 69.2 18.6 172 384-560 46-244 (567)
195 2hr2_A Hypothetical protein; a 97.6 0.0019 6.5E-08 54.7 15.0 94 442-535 16-130 (159)
196 1klx_A Cysteine rich protein B 97.6 0.0018 6.1E-08 54.1 14.8 111 416-537 9-127 (138)
197 2l6j_A TPR repeat-containing p 97.6 5.8E-05 2E-09 60.1 4.8 92 471-565 3-101 (111)
198 3n71_A Histone lysine methyltr 97.5 0.00023 7.8E-09 73.3 9.4 124 412-535 319-463 (490)
199 2if4_A ATFKBP42; FKBP-like, al 97.5 0.00018 6E-09 70.8 7.7 148 156-325 179-328 (338)
200 2kat_A Uncharacterized protein 97.4 0.0013 4.6E-08 52.6 11.3 80 455-536 3-82 (115)
201 1na3_A Designed protein CTPR2; 97.4 0.0015 5.2E-08 49.4 10.8 82 472-555 9-90 (91)
202 2kat_A Uncharacterized protein 97.4 0.00066 2.3E-08 54.4 9.0 79 174-254 3-81 (115)
203 2l6j_A TPR repeat-containing p 97.4 0.00011 3.8E-09 58.4 4.3 93 155-249 3-101 (111)
204 3ma5_A Tetratricopeptide repea 97.3 0.0015 5.2E-08 50.9 9.2 64 471-535 6-69 (100)
205 1na3_A Designed protein CTPR2; 97.2 0.0019 6.5E-08 48.8 9.2 61 157-218 10-70 (91)
206 1zu2_A Mitochondrial import re 97.1 0.00094 3.2E-08 56.5 7.1 85 449-535 14-119 (158)
207 1zu2_A Mitochondrial import re 97.1 0.00093 3.2E-08 56.5 6.4 86 167-254 13-119 (158)
208 3ma5_A Tetratricopeptide repea 97.0 0.0028 9.5E-08 49.3 8.5 67 434-501 4-70 (100)
209 3qww_A SET and MYND domain-con 96.9 0.002 6.9E-08 65.1 8.4 85 451-535 312-410 (433)
210 3qwp_A SET and MYND domain-con 96.9 0.0047 1.6E-07 62.5 10.6 92 444-535 294-399 (429)
211 2kc7_A BFR218_protein; tetratr 96.6 0.0042 1.4E-07 47.9 6.6 58 479-537 7-65 (99)
212 3mkq_A Coatomer beta'-subunit; 96.6 0.13 4.5E-06 56.6 20.9 127 336-495 633-759 (814)
213 3ly7_A Transcriptional activat 96.5 0.02 6.7E-07 55.6 11.9 66 506-573 276-341 (372)
214 3mkq_A Coatomer beta'-subunit; 96.4 0.097 3.3E-06 57.6 18.8 24 334-357 683-706 (814)
215 3bee_A Putative YFRE protein; 96.4 0.025 8.7E-07 43.1 9.8 65 471-536 5-72 (93)
216 2kc7_A BFR218_protein; tetratr 96.4 0.0095 3.3E-07 45.8 7.2 66 513-579 6-72 (99)
217 3qww_A SET and MYND domain-con 96.4 0.014 4.9E-07 58.8 10.3 86 415-500 311-410 (433)
218 3qwp_A SET and MYND domain-con 96.3 0.021 7E-07 57.7 11.3 94 407-500 292-399 (429)
219 3ly7_A Transcriptional activat 96.2 0.22 7.4E-06 48.3 17.1 132 154-288 192-337 (372)
220 1wy6_A Hypothetical protein ST 96.1 0.41 1.4E-05 38.5 15.1 66 506-572 90-155 (172)
221 1pc2_A Mitochondria fission pr 96.0 0.06 2.1E-06 44.9 10.4 83 452-536 13-100 (152)
222 2v5f_A Prolyl 4-hydroxylase su 95.6 0.094 3.2E-06 40.8 9.7 66 471-536 4-75 (104)
223 1wy6_A Hypothetical protein ST 95.1 1.1 3.6E-05 36.2 14.0 139 308-469 19-157 (172)
224 4ady_A RPN2, 26S proteasome re 95.0 5.2 0.00018 43.9 25.6 152 412-569 500-656 (963)
225 3mkq_B Coatomer subunit alpha; 95.0 1.1 3.8E-05 38.3 15.1 103 164-287 13-115 (177)
226 3bee_A Putative YFRE protein; 95.0 0.17 5.9E-06 38.4 9.2 64 155-219 5-71 (93)
227 2v5f_A Prolyl 4-hydroxylase su 94.8 0.31 1.1E-05 37.8 10.6 67 435-501 3-75 (104)
228 3mkq_B Coatomer subunit alpha; 94.7 1.2 4.1E-05 38.1 14.6 99 236-356 15-113 (177)
229 1pc2_A Mitochondria fission pr 94.7 0.21 7E-06 41.7 9.6 80 420-501 16-100 (152)
230 3u64_A Protein TP_0956; tetrat 94.6 0.2 7E-06 46.6 10.2 110 453-570 179-297 (301)
231 4ady_A RPN2, 26S proteasome re 94.3 4.3 0.00015 44.5 21.2 297 230-535 343-657 (963)
232 1nzn_A CGI-135 protein, fissio 93.9 0.45 1.6E-05 38.1 9.6 83 451-535 15-102 (126)
233 3u64_A Protein TP_0956; tetrat 93.5 0.5 1.7E-05 44.0 10.5 107 418-534 179-296 (301)
234 4h7y_A Dual specificity protei 93.5 1.1 3.6E-05 37.0 11.2 51 486-537 74-124 (161)
235 4h7y_A Dual specificity protei 93.5 0.39 1.3E-05 39.6 8.5 103 154-258 11-126 (161)
236 3lvg_A Clathrin heavy chain 1; 92.0 2.3E-05 7.9E-10 77.3 -21.5 221 157-414 55-275 (624)
237 1nzn_A CGI-135 protein, fissio 92.0 0.95 3.2E-05 36.2 8.8 87 169-256 14-104 (126)
238 1qsa_A Protein (soluble lytic 91.9 14 0.00047 38.8 25.9 329 194-570 10-347 (618)
239 4gns_B Protein CSD3, chitin bi 91.0 2.1 7.2E-05 45.9 13.0 52 517-569 347-398 (754)
240 4b4t_P 26S proteasome regulato 90.5 15 0.00052 36.7 20.4 49 240-288 30-83 (445)
241 3lvg_A Clathrin heavy chain 1; 90.0 0.05 1.7E-06 54.2 -0.5 396 99-529 60-534 (624)
242 4gns_B Protein CSD3, chitin bi 88.9 4.5 0.00015 43.4 13.5 63 470-534 611-682 (754)
243 4fhn_B Nucleoporin NUP120; pro 87.7 19 0.00065 41.1 18.6 131 262-395 900-1049(1139)
244 4b4t_P 26S proteasome regulato 87.6 24 0.00083 35.2 21.3 50 310-359 30-83 (445)
245 3o48_A Mitochondria fission 1 87.1 6.4 0.00022 31.6 10.1 68 468-535 36-106 (134)
246 2ff4_A Probable regulatory pro 86.9 2.7 9.4E-05 41.4 9.8 128 154-300 110-249 (388)
247 2ff4_A Probable regulatory pro 86.8 8.8 0.0003 37.7 13.4 75 474-549 173-252 (388)
248 1y8m_A FIS1; mitochondria, unk 86.0 13 0.00044 30.3 12.5 68 469-536 36-106 (144)
249 3lpz_A GET4 (YOR164C homolog); 85.0 27 0.00091 33.2 20.7 84 468-570 132-215 (336)
250 1v54_E Cytochrome C oxidase po 84.0 8.1 0.00028 29.3 8.5 46 455-500 28-73 (109)
251 4fhn_B Nucleoporin NUP120; pro 83.7 30 0.001 39.4 17.8 55 264-323 815-869 (1139)
252 3ffl_A Anaphase-promoting comp 82.5 4.3 0.00015 34.1 7.4 116 442-570 25-150 (167)
253 2p58_C Putative type III secre 82.3 14 0.00047 27.9 9.1 78 276-362 22-99 (116)
254 3o48_A Mitochondria fission 1 82.2 15 0.00052 29.5 10.2 68 434-501 37-107 (134)
255 2uwj_G Type III export protein 80.9 13 0.00045 27.9 8.5 78 276-362 21-98 (115)
256 2wpv_A GET4, UPF0363 protein Y 80.4 39 0.0013 31.8 19.9 83 470-571 132-217 (312)
257 1v54_E Cytochrome C oxidase po 79.8 18 0.00061 27.4 9.3 61 207-268 26-86 (109)
258 2y69_E Cytochrome C oxidase su 78.8 13 0.00045 29.8 8.5 47 455-501 71-117 (152)
259 3lpz_A GET4 (YOR164C homolog); 78.7 46 0.0016 31.6 21.4 82 435-535 134-215 (336)
260 1y8m_A FIS1; mitochondria, unk 77.7 27 0.00092 28.4 11.9 68 434-501 36-106 (144)
261 3ffl_A Anaphase-promoting comp 75.2 12 0.0004 31.4 7.9 60 159-218 23-90 (167)
262 3txn_A 26S proteasome regulato 74.9 65 0.0022 31.4 21.6 26 158-183 21-46 (394)
263 2y69_E Cytochrome C oxidase su 72.1 35 0.0012 27.4 9.3 47 209-255 71-117 (152)
264 2wpv_A GET4, UPF0363 protein Y 70.6 71 0.0024 30.0 21.0 80 436-534 133-215 (312)
265 4b4t_R RPN7, 26S proteasome re 68.7 41 0.0014 33.4 11.9 98 158-255 133-237 (429)
266 3esl_A Checkpoint serine/threo 66.3 42 0.0014 29.1 9.6 56 485-540 92-148 (202)
267 4b4t_R RPN7, 26S proteasome re 65.9 38 0.0013 33.6 11.0 97 404-500 133-236 (429)
268 1zbp_A Hypothetical protein VP 63.2 37 0.0013 31.0 9.1 53 236-289 7-59 (273)
269 3txn_A 26S proteasome regulato 58.8 1.4E+02 0.0047 29.1 24.0 166 193-359 21-208 (394)
270 1zbp_A Hypothetical protein VP 53.2 40 0.0014 30.8 7.5 56 480-536 5-60 (273)
271 3esl_A Checkpoint serine/threo 51.4 1.2E+02 0.0041 26.2 11.3 55 240-294 93-148 (202)
272 2d2s_A Exocyst complex compone 51.1 63 0.0022 28.9 8.6 89 161-252 23-117 (235)
273 4a1g_A Mitotic checkpoint seri 50.0 93 0.0032 25.6 8.7 50 526-575 84-134 (152)
274 1qsa_A Protein (soluble lytic 48.8 2.5E+02 0.0086 29.2 36.0 254 193-465 74-347 (618)
275 3eu9_A Huntingtin-interacting 46.0 48 0.0016 29.0 7.3 19 198-216 46-64 (240)
276 2d2s_A Exocyst complex compone 45.9 1.1E+02 0.0037 27.3 9.3 89 443-534 24-118 (235)
277 2r9g_A AAA ATPase, central reg 45.3 1.5E+02 0.0051 25.6 10.0 103 478-581 17-131 (204)
278 2uwj_G Type III export protein 45.1 97 0.0033 23.4 8.8 51 200-256 48-98 (115)
279 1wdy_A 2-5A-dependent ribonucl 44.5 49 0.0017 29.9 7.2 9 483-491 227-235 (285)
280 2p58_C Putative type III secre 43.9 1E+02 0.0035 23.3 9.6 48 201-254 50-97 (116)
281 3ltm_A Alpha-REP4; protein eng 43.2 1.6E+02 0.0053 25.2 20.9 17 190-206 32-48 (211)
282 4a1g_A Mitotic checkpoint seri 42.5 1E+02 0.0035 25.3 7.8 56 172-227 81-137 (152)
283 2wvi_A Mitotic checkpoint seri 42.2 1.5E+02 0.0051 24.7 9.0 54 491-544 79-133 (164)
284 1k1a_A B-cell lymphoma 3-encod 41.7 1.2E+02 0.004 26.4 9.2 85 233-321 13-101 (241)
285 3eiq_C Programmed cell death p 41.1 2.5E+02 0.0084 26.9 14.0 67 404-471 219-287 (358)
286 1wdy_A 2-5A-dependent ribonucl 40.7 45 0.0015 30.1 6.3 51 162-216 8-61 (285)
287 3ctd_A Putative ATPase, AAA fa 38.8 2E+02 0.0067 25.1 9.3 95 477-572 37-142 (213)
288 3bge_A Predicted ATPase; struc 38.6 1.5E+02 0.0052 25.5 8.4 52 486-537 21-77 (201)
289 2zu6_B Programmed cell death p 38.3 2.5E+02 0.0085 26.1 11.0 100 475-575 169-278 (307)
290 2r9g_A AAA ATPase, central reg 37.6 2E+02 0.0068 24.8 9.3 37 344-381 26-62 (204)
291 2ijq_A Hypothetical protein; s 34.5 1.7E+02 0.0058 24.3 7.9 50 485-534 45-102 (161)
292 3ltm_A Alpha-REP4; protein eng 34.3 2.1E+02 0.0073 24.2 22.1 153 154-323 31-183 (211)
293 3bge_A Predicted ATPase; struc 34.2 2E+02 0.0069 24.7 8.4 38 344-381 19-56 (201)
294 3pvs_A Replication-associated 33.7 3.6E+02 0.012 26.6 13.0 155 382-555 166-343 (447)
295 3hra_A Ankyrin repeat family p 33.4 1.8E+02 0.0062 24.3 8.8 15 202-216 13-27 (201)
296 3c1d_A Protein ORAA, regulator 31.7 2.1E+02 0.0073 23.4 10.0 50 383-434 46-95 (159)
297 2keb_A DNA polymerase subunit 31.7 1.6E+02 0.0055 22.0 6.7 56 491-548 28-88 (101)
298 4b4t_S RPN3, 26S proteasome re 31.5 4.2E+02 0.014 26.8 12.6 25 158-182 233-257 (523)
299 3ctd_A Putative ATPase, AAA fa 29.9 2.8E+02 0.0095 24.1 8.8 38 344-381 47-84 (213)
300 3kea_A K1L; tropism, ANK repea 29.5 2.1E+02 0.0072 25.9 9.0 114 198-321 66-183 (285)
301 4g8k_A 2-5A-dependent ribonucl 29.4 3.2E+02 0.011 25.2 10.6 287 230-541 26-328 (337)
302 2fe3_A Peroxide operon regulat 28.4 2E+02 0.0069 23.1 7.6 36 205-240 35-70 (145)
303 4aez_C MAD3, mitotic spindle c 27.5 1.6E+02 0.0056 25.9 7.1 56 172-227 130-186 (223)
304 2ion_A PDCD4, programmed cell 27.5 2.5E+02 0.0086 22.9 8.3 64 405-469 12-77 (152)
305 2ion_A PDCD4, programmed cell 27.3 2.5E+02 0.0087 22.9 8.4 24 300-323 13-36 (152)
306 1ug3_A EIF4GI, eukaryotic prot 26.7 3.2E+02 0.011 25.8 9.7 23 230-252 15-37 (339)
307 4gq2_M Nucleoporin NUP120; bet 26.5 5.7E+02 0.02 28.2 13.1 108 232-346 816-950 (950)
308 3eiq_C Programmed cell death p 26.2 4.3E+02 0.015 25.2 13.8 26 158-183 56-81 (358)
309 2b7e_A PRE-mRNA processing pro 26.2 52 0.0018 22.0 2.7 29 243-271 3-31 (59)
310 3pvs_A Replication-associated 25.8 4.9E+02 0.017 25.6 13.1 22 380-401 268-289 (447)
311 4b4t_S RPN3, 26S proteasome re 25.7 5.3E+02 0.018 26.0 12.1 64 192-255 232-299 (523)
312 1k1a_A B-cell lymphoma 3-encod 25.5 3.2E+02 0.011 23.4 10.2 53 163-215 13-67 (241)
313 2zu6_B Programmed cell death p 25.4 4.1E+02 0.014 24.6 12.1 23 160-182 7-29 (307)
314 4aez_C MAD3, mitotic spindle c 25.2 1.2E+02 0.0042 26.7 5.8 23 477-499 155-177 (223)
315 3hra_A Ankyrin repeat family p 24.4 1.1E+02 0.0037 25.8 5.6 82 235-321 11-94 (201)
316 3ubw_A 14-3-3E, 14-3-3 protein 23.8 4E+02 0.014 24.0 11.1 48 523-570 172-227 (261)
317 2nsz_A Programmed cell death p 23.7 2.7E+02 0.0092 21.9 9.8 24 300-323 11-34 (129)
318 3l6a_A Eukaryotic translation 23.6 4.9E+02 0.017 24.8 12.4 26 158-183 14-39 (364)
319 2o03_A Probable zinc uptake re 23.0 1.6E+02 0.0054 23.2 5.8 47 161-207 15-61 (131)
320 2f6m_A Suppressor protein STP2 22.6 1.7E+02 0.0059 19.9 4.8 47 228-275 4-50 (65)
321 2nsz_A Programmed cell death p 22.5 2.8E+02 0.0097 21.7 9.7 64 405-469 10-75 (129)
322 3eyy_A Putative iron uptake re 22.4 1.8E+02 0.0062 23.4 6.2 6 211-216 37-42 (145)
323 2wvi_A Mitotic checkpoint seri 21.8 3.5E+02 0.012 22.5 10.6 52 244-295 78-130 (164)
324 2ijq_A Hypothetical protein; s 21.6 3.5E+02 0.012 22.4 8.3 51 520-570 45-103 (161)
325 3mwm_A ZUR, putative metal upt 21.2 1.4E+02 0.0048 23.9 5.2 47 161-207 18-64 (139)
326 4ets_A Ferric uptake regulatio 20.2 1.9E+02 0.0065 23.9 5.9 26 336-361 36-61 (162)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.1e-37 Score=330.87 Aligned_cols=434 Identities=11% Similarity=0.016 Sum_probs=381.0
Q ss_pred hcCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007640 132 RLDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAK 211 (595)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 211 (595)
..++.+.|+.+|..+.. ..|+..++..++.+|.+.|++++|+.+|+.+... +++..+++.++.+|.+.|++++|.
T Consensus 96 ~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 170 (597)
T 2xpi_A 96 MQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGAL 170 (597)
T ss_dssp HTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHH
Confidence 34778889888877653 2367889999999999999999999999988654 688999999999999999999999
Q ss_pred HHHHhccCC---------------CCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH---------
Q 007640 212 GLLSQFRPG---------------EVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNIL--------- 267 (595)
Q Consensus 212 ~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l--------- 267 (595)
++|+++... +.+.+..+|+.++.+|.+.|++++|+++|+++.+.++. +...+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 249 (597)
T 2xpi_A 171 NLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTAD 249 (597)
T ss_dssp HHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHH
T ss_pred HHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccch
Confidence 999964332 23456889999999999999999999999999987642 44443333
Q ss_pred -----------------------------HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007640 268 -----------------------------IQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHEL 318 (595)
Q Consensus 268 -----------------------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~ 318 (595)
+..|.+.|++++|.++|+++.+. +++..+++.++..|.+.|++++|.++
T Consensus 250 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (597)
T 2xpi_A 250 EEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAI 327 (597)
T ss_dssp HHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 45566789999999999999865 68999999999999999999999999
Q ss_pred HHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007640 319 LKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGY 398 (595)
Q Consensus 319 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 398 (595)
|+++.... +.+..++..++.++.+.|++++|.++++++.+.. +.+..++..++.+|.+.|++++|..+|+++.+..
T Consensus 328 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 403 (597)
T 2xpi_A 328 TTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD- 403 (597)
T ss_dssp HHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-
Confidence 99998765 4577889999999999999999999999998654 5678899999999999999999999999998753
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 007640 399 LPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPV 478 (595)
Q Consensus 399 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 478 (595)
+.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+... .++.+|+.+
T Consensus 404 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l 481 (597)
T 2xpi_A 404 PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNEL 481 (597)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHH
Confidence 3468899999999999999999999999998875 56889999999999999999999999999988764 378999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 479 IDGFCKAGNVDEANVIVAEMEEK----RCKPD--KVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCL 552 (595)
Q Consensus 479 i~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 552 (595)
+..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..++.+|
T Consensus 482 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~ 560 (597)
T 2xpi_A 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVY 560 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 99999999999999999999876 66787 7899999999999999999999999999876 66899999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCccc
Q 007640 553 LKGGMPNEAFRIMQRASEDQNLQLPSWK 580 (595)
Q Consensus 553 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 580 (595)
.+.|++++|.+.++++.+..+.....+.
T Consensus 561 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 588 (597)
T 2xpi_A 561 LHKKIPGLAITHLHESLAISPNEIMASD 588 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhcCCCChHHHH
Confidence 9999999999999999998776544433
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-35 Score=319.64 Aligned_cols=414 Identities=11% Similarity=-0.007 Sum_probs=363.6
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHH
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLL 233 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 233 (595)
+++..|+.++..+.+.|++++|+.+|++|... .|+..++..++.+|.+.|++++|..+|+++... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 57889999999999999999999999999864 578899999999999999999999999998753 67899999999
Q ss_pred HHHHHcCCHhHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 007640 234 NALVKQNNADEAVYMFKEYFRL---------------YSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVT 298 (595)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~---------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 298 (595)
.+|.+.|++++|.++|+++... +..++..+|+.++.+|.+.|++++|.++|++|.+.+ +.+...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 236 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEA 236 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHH
Confidence 9999999999999999963221 122358899999999999999999999999998753 113333
Q ss_pred HHH--------------------------------------HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHH
Q 007640 299 YNT--------------------------------------LISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVIS 340 (595)
Q Consensus 299 ~~~--------------------------------------li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~ 340 (595)
+.. ++..|.+.|++++|.++|+++... +++..+|+.++.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~ 313 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL---EKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG---GGCHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC---CchHHHHHHHHH
Confidence 332 245566789999999999998754 488999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007640 341 GYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQ 420 (595)
Q Consensus 341 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 420 (595)
+|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..+|+.++..|.+.|++++
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999999865 4578899999999999999999999999998653 4578899999999999999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007640 421 GLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEE 500 (595)
Q Consensus 421 A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 500 (595)
|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 392 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998763 55788999999999999999999999999998764 4788999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007640 501 KRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRI----GCAPD--DITVNSLISCLLKGGMPNEAFRIMQRASEDQNL 574 (595)
Q Consensus 501 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 574 (595)
.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+..+.
T Consensus 470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 74 347899999999999999999999999999885 66787 789999999999999999999999999988765
Q ss_pred CCCccc
Q 007640 575 QLPSWK 580 (595)
Q Consensus 575 ~~~~~~ 580 (595)
....|.
T Consensus 549 ~~~~~~ 554 (597)
T 2xpi_A 549 DANVHT 554 (597)
T ss_dssp CHHHHH
T ss_pred ChHHHH
Confidence 444443
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.6e-27 Score=241.58 Aligned_cols=384 Identities=12% Similarity=0.059 Sum_probs=318.6
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCC
Q 007640 162 VMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNN 241 (595)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 241 (595)
+...+.+.|++++|++.++.+.+.. |.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 4566788999999999999988865 6677778888888899999999999998887654 5678899999999999999
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007640 242 ADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKE 321 (595)
Q Consensus 242 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 321 (595)
+++|+..|+++.+..+ .+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999988754 466789999999999999999999999988653 22455667788888888999999999999
Q ss_pred HHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007640 322 VKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPD 401 (595)
Q Consensus 322 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~ 401 (595)
+.... +.+..+|..+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|...+++..+.. +.+
T Consensus 161 al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 161 AIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 88754 3457788999999999999999999999998864 4456778888889999999999999998887753 335
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 007640 402 VVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDG 481 (595)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 481 (595)
..++..+...+...|++++|...|+++.+.. +.+..++..+...+.+.|++++|.+.++++.+.. +.+..++..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 7888889999999999999999999998874 5567888889999999999999999999988765 3478888999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007640 482 FCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGM 557 (595)
Q Consensus 482 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 557 (595)
+.+.|++++|.+.++++.+.. +.+..++..+..++.+.|++++|...|+++++.. +.+...+..+...+.+.|+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 999999999999999988763 3467788899999999999999999999988753 4456777788777766653
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2.1e-29 Score=262.66 Aligned_cols=185 Identities=18% Similarity=0.225 Sum_probs=112.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHhhCCCCCCHHHH
Q 007640 370 FNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNG---------QLNQGLKLCDEMKGKNLSPNVYTF 440 (595)
Q Consensus 370 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---------~~~~A~~l~~~m~~~~~~p~~~~~ 440 (595)
++.+|++|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+ .+++|.++|++|...|+.||..||
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34444444444444444444444444444444444444444444333 245666666666666666666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007640 441 TILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMK 520 (595)
Q Consensus 441 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 520 (595)
+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007640 521 GRMVEAISIFNKMLRIGCAPDDITVNSLISCLLK 554 (595)
Q Consensus 521 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 554 (595)
|+.++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666654
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.7e-29 Score=263.26 Aligned_cols=187 Identities=14% Similarity=0.184 Sum_probs=147.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHhCCCCCCHH
Q 007640 333 VTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGN---------MVSAEYMRERMLSFGYLPDVV 403 (595)
Q Consensus 333 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~---------~~~A~~~~~~m~~~g~~p~~~ 403 (595)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. +++|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45666777777777777777777777777777777777777777766543 567778888888888888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 007640 404 TFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFC 483 (595)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 483 (595)
+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007640 484 KAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCM 519 (595)
Q Consensus 484 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 519 (595)
+.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 888888888888888888888888888887777765
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=9.3e-27 Score=237.44 Aligned_cols=369 Identities=14% Similarity=0.047 Sum_probs=324.5
Q ss_pred HHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007640 197 FVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGE 276 (595)
Q Consensus 197 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 276 (595)
+...+.+.|++++|...++++.+.. +.+...+..+...+...|++++|...++...+..+ .+..+|..+...|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCC
Confidence 4566788999999999999987754 45677888889999999999999999999988764 688999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 007640 277 VKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYN 356 (595)
Q Consensus 277 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~ 356 (595)
+++|...|+++.+.. +.+..+|..+...+.+.|++++|.+.|+++.... +.+...+..+...+...|++++|.+.|+
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999999999998642 3356689999999999999999999999998764 3345667888889999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC
Q 007640 357 EMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPN 436 (595)
Q Consensus 357 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 436 (595)
++.+.. +.+..+|..+...+...|++++|...|+++.+.. +.+...|..+...+...|++++|...+++..... +.+
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 998864 4467889999999999999999999999999864 3467889999999999999999999999998764 556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007640 437 VYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIG 516 (595)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 516 (595)
..++..+...+.+.|++++|.+.++++.+.++. ++.+|..+...+.+.|++++|.+.++++.+.. +.+..++..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 889999999999999999999999999987643 67899999999999999999999999999873 5588999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007640 517 HCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQL 576 (595)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 576 (595)
+...|++++|...++++++.. +.+..++..++.+|.+.|++++|.+.++++++..+...
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 373 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 373 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 999999999999999998853 56688999999999999999999999999998765443
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=8.5e-24 Score=223.58 Aligned_cols=412 Identities=9% Similarity=-0.037 Sum_probs=325.7
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHH
Q 007640 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNA 235 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 235 (595)
...|..+...+.+.|++++|+..|+++.+.. |+..++..+..++.+.|++++|...++++.+.+ +.+..++..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4577788899999999999999999999975 689999999999999999999999999998765 5577899999999
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-------------------------
Q 007640 236 LVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSF------------------------- 290 (595)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------- 290 (595)
+.+.|++++|...|+++.+.++ ++......++..+........+.+.+..+...
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999998775 44444445554444433333222222111100
Q ss_pred ----------CC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----cCCC-------CCCHhhHH
Q 007640 291 ----------GC---------SPDIVTYNTLISGLCR---VNEVARGHELLKEVKF-----KSEF-------SPDVVTYT 336 (595)
Q Consensus 291 ----------g~---------~p~~~t~~~li~~~~~---~g~~~~A~~~~~~~~~-----~~~~-------~p~~~~~~ 336 (595)
.. +.+...+......+.. .|++++|...++++.. .... +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 00 1113334444444443 7999999999999876 2111 12356788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 007640 337 SVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNG 416 (595)
Q Consensus 337 ~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 416 (595)
.+...+...|++++|...|+++.+.+ |+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 88899999999999999999998865 448888889999999999999999999998864 346778889999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 007640 417 QLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVA 496 (595)
Q Consensus 417 ~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 496 (595)
++++|...++++.+.. +.+..++..+...+...|++++|...++.+.+... .+..++..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998774 45677888899999999999999999999887653 367789999999999999999999999
Q ss_pred HHHHCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007640 497 EMEEKRCK-PD----KVTFTILIIGHCM---KGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRA 568 (595)
Q Consensus 497 ~m~~~g~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 568 (595)
++.+.... ++ ...+..+...+.. .|++++|...++++++.. +.+..++..++.+|.+.|++++|.+.++++
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 98765211 11 3488889999999 999999999999998864 557788899999999999999999999999
Q ss_pred HhcCCCCCC
Q 007640 569 SEDQNLQLP 577 (595)
Q Consensus 569 ~~~~~~~~~ 577 (595)
.+..+....
T Consensus 476 ~~~~~~~~~ 484 (514)
T 2gw1_A 476 ADLARTMEE 484 (514)
T ss_dssp HHHCSSHHH
T ss_pred HHhccccHH
Confidence 987765433
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=3.8e-22 Score=212.25 Aligned_cols=407 Identities=10% Similarity=0.018 Sum_probs=299.1
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHH
Q 007640 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNA 235 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 235 (595)
...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++.+.|++++|+..++++.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4467777788888888888888888888765 5677788888888888888888888888887654 4467778888888
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCCCHHH-----------
Q 007640 236 LVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSF------GCSPDIVT----------- 298 (595)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t----------- 298 (595)
+...|++++|...|+. .... |+ .....+..+...+...+|...++++... ...|+...
T Consensus 103 ~~~~g~~~~A~~~~~~-~~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSV-LSLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHH-HhcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 8888888888888863 3222 22 1222334445555556777777766432 11122111
Q ss_pred -------------------HHHHHHHHH--------hcCCHHHHHHHHHHHHhcCCCCCC-----HhhHHHHHHHHHhcC
Q 007640 299 -------------------YNTLISGLC--------RVNEVARGHELLKEVKFKSEFSPD-----VVTYTSVISGYCKLG 346 (595)
Q Consensus 299 -------------------~~~li~~~~--------~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~ll~~~~~~g 346 (595)
...+...+. ..|++++|..+++++....+-.++ ..++..+...+...|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 111111111 124788999999998865411111 235667778888999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007640 347 KMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCD 426 (595)
Q Consensus 347 ~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 426 (595)
++++|...|+++.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++
T Consensus 258 ~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 258 NLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp CHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999885 4668888889999999999999999999988764 3467889999999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC----
Q 007640 427 EMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKR---- 502 (595)
Q Consensus 427 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---- 502 (595)
++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+..
T Consensus 335 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 335 KAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 998764 44677888999999999999999999999987753 367789999999999999999999999987642
Q ss_pred -CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007640 503 -CKPDKVTFTILIIGHCMK----------GRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASED 571 (595)
Q Consensus 503 -~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (595)
.......+......+... |++++|...|+++++.. +.+..++..++.+|.+.|++++|.+.++++.+.
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 111223344555677777 99999999999999864 567788999999999999999999999999987
Q ss_pred CCCC
Q 007640 572 QNLQ 575 (595)
Q Consensus 572 ~~~~ 575 (595)
.+..
T Consensus 492 ~~~~ 495 (537)
T 3fp2_A 492 ARTM 495 (537)
T ss_dssp C--C
T ss_pred CCCc
Confidence 6543
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=4.8e-22 Score=206.52 Aligned_cols=302 Identities=15% Similarity=0.084 Sum_probs=192.0
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHH
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLL 233 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 233 (595)
.+...|..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|...|+++.+.+ +.+..++..++
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 467788899999999999999999999998864 6678889999999999999999999999988765 45678888999
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCH---HHHHHHHHH------------HHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 007640 234 NALVKQNNADEAVYMFKEYFRLYSQPDT---WTFNILIQG------------LSRIGEVKKAFEFFYDMGSFGCSPDIVT 298 (595)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~------------~~~~g~~~~A~~~~~~m~~~g~~p~~~t 298 (595)
..|.+.|++++|...|+++.+..+ .+. ..+..++.. +...|++++|...|+++.+.. +.+..+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 999999999999999999987653 233 555555433 666667777777776666432 335566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-----
Q 007640 299 YNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVL----- 373 (595)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l----- 373 (595)
+..+...|.+.|++++|.+.|+++.... +.+..+|..+...|...|++++|+..|+++.+.. +.+...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 6666666666666666666666665442 3445666666666666666666666666666532 1222223222
Q ss_pred -------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 007640 374 -------IDGFGKVGNMVSAEYMRERMLSFGYLPD-----VVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFT 441 (595)
Q Consensus 374 -------l~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~ 441 (595)
...+...|++++|...++++.+.. |+ ...|..+...+.+.|++++|+..++++.+.. +.+..++.
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~ 333 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 344444455555555554444421 22 2234444444444444444444444444331 22344444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 007640 442 ILINALCKENRLNDARRFLKQLKW 465 (595)
Q Consensus 442 ~ll~~~~~~g~~~~A~~~~~~~~~ 465 (595)
.+..+|...|++++|...++++.+
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=9.7e-22 Score=204.22 Aligned_cols=339 Identities=13% Similarity=0.024 Sum_probs=175.9
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 007640 176 QVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRL 255 (595)
Q Consensus 176 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (595)
...+..+.... +.+...+..++..+.+.|++++|..+|+++.+.. +.+..++..++.++...|++++|...|+++.+.
T Consensus 12 ~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 12 DLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 33333433332 4455556666666666666666666666655432 334556666666666666666666666666655
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 007640 256 YSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPD-I---VTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPD 331 (595)
Q Consensus 256 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~---~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 331 (595)
++ .+..++..+...|.+.|++++|...|+++.+. .|+ . ..+..++..+..
T Consensus 90 ~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~----------------------- 143 (450)
T 2y4t_A 90 KM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM----------------------- 143 (450)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH-----------------------
T ss_pred CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH-----------------------
Confidence 43 34555666666666666666666666666543 232 2 344444332000
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007640 332 VVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDG 411 (595)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 411 (595)
..+..+...+.+.|++++|+..|+++.+.. +.+...+..+..+|.+.|++++|...++++.+.. +.+..++..+...
T Consensus 144 -~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 220 (450)
T 2y4t_A 144 -QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTL 220 (450)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 001111223445555555555555555432 2344455555555555555555555555554432 2244555555555
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCCCCC----HhhH
Q 007640 412 YCRNGQLNQGLKLCDEMKGKNLSPNVYTFTIL------------INALCKENRLNDARRFLKQLKWNDLVPK----PFMY 475 (595)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l------------l~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~ 475 (595)
|...|++++|+..|+++.... +.+...+..+ ...+.+.|++++|...++++.+.... + ...|
T Consensus 221 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~ 298 (450)
T 2y4t_A 221 YYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSK 298 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHH
Confidence 555555555555555554432 2233333333 55666666666666666666654321 1 2355
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007640 476 NPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLI 549 (595)
Q Consensus 476 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 549 (595)
..+...+.+.|++++|...++++.+.. +.+...|..+..+|...|++++|...++++++.. +-+...+..+.
T Consensus 299 ~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 299 ERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 666666666666666666666666542 2255666666666666666666666666666532 23344444444
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.8e-21 Score=205.76 Aligned_cols=396 Identities=11% Similarity=-0.033 Sum_probs=314.5
Q ss_pred HHhcCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 007640 130 IKRLDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDA 209 (595)
Q Consensus 130 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 209 (595)
+-..++.+.|+..|..+.... |+..+|..+..++.+.|++++|+..++.+.+.+ +.+..++..+..++.+.|++++
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHH
Confidence 334478888888888776543 689999999999999999999999999999876 6788899999999999999999
Q ss_pred HHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHH-----------------------------------H
Q 007640 210 AKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYF-----------------------------------R 254 (595)
Q Consensus 210 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----------------------------------~ 254 (595)
|...|+++...+ +++......++..+.+......+.+.+..+. .
T Consensus 92 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
T 2gw1_A 92 AMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI 170 (514)
T ss_dssp HHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTT
T ss_pred HHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhh
Confidence 999999998765 3343444444444443332222222221110 0
Q ss_pred cCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhh-----CCCCC--------CHHHHHHHHHHHHhc
Q 007640 255 LYS---------QPDTWTFNILIQGLSR---IGEVKKAFEFFYDMGS-----FGCSP--------DIVTYNTLISGLCRV 309 (595)
Q Consensus 255 ~~~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~~li~~~~~~ 309 (595)
... +.+...+..+...+.. .|++++|...|+++.+ ..-.| +..++..+...+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (514)
T 2gw1_A 171 FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK 250 (514)
T ss_dssp SCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHC
Confidence 000 1114444445555554 8999999999999987 32122 355778888999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007640 310 NEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYM 389 (595)
Q Consensus 310 g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 389 (595)
|++++|.+.++++.... |+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 251 ~~~~~A~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 326 (514)
T 2gw1_A 251 NDPLGAHEDIKKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKD 326 (514)
T ss_dssp SCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999998765 447888999999999999999999999998864 45678899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 007640 390 RERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLV 469 (595)
Q Consensus 390 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 469 (595)
++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++......
T Consensus 327 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 327 FDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp HHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 99999864 3367788999999999999999999999998763 556788999999999999999999999998765322
Q ss_pred -CC----HhhHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007640 470 -PK----PFMYNPVIDGFCK---AGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 470 -p~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (595)
++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+...+...|++++|...|+++.+..
T Consensus 405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 11 3389999999999 999999999999998864 3467888999999999999999999999999864
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=3.7e-19 Score=189.10 Aligned_cols=391 Identities=12% Similarity=0.005 Sum_probs=304.1
Q ss_pred HHhcCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 007640 130 IKRLDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDA 209 (595)
Q Consensus 130 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 209 (595)
+...++.+.|+..|+-+....+ .++.+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+...+...|++++
T Consensus 35 ~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 35 FFTAKNFNEAIKYYQYAIELDP--NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp HHHTTCCC-CHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHH
Confidence 3344778888888877655432 578999999999999999999999999999876 6788999999999999999999
Q ss_pred HHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC------CCCCHHH--------------------
Q 007640 210 AKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLY------SQPDTWT-------------------- 263 (595)
Q Consensus 210 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~-------------------- 263 (595)
|...|+.+ ... |+ .....+..+...+....|...++++.... ..|+...
T Consensus 112 A~~~~~~~-~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 112 AMFDLSVL-SLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp HHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred HHHHHHHH-hcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 99999744 322 22 12223445555666778888888886531 1122221
Q ss_pred ----------HHHHHHHHH--------hcCCHHHHHHHHHHHhhCCCCCC--------HHHHHHHHHHHHhcCCHHHHHH
Q 007640 264 ----------FNILIQGLS--------RIGEVKKAFEFFYDMGSFGCSPD--------IVTYNTLISGLCRVNEVARGHE 317 (595)
Q Consensus 264 ----------~~~li~~~~--------~~g~~~~A~~~~~~m~~~g~~p~--------~~t~~~li~~~~~~g~~~~A~~ 317 (595)
...+...+. ..|++++|..+|+++.+. .|+ ..++..+...+...|++++|.+
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 122222221 125789999999999864 344 2356777788889999999999
Q ss_pred HHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007640 318 LLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFG 397 (595)
Q Consensus 318 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 397 (595)
.++.+.... |+...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++.+..
T Consensus 265 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 265 LLQESINLH---PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHC---CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcC---CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 999998754 668889999999999999999999999998864 4567889999999999999999999999998864
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-----CCH
Q 007640 398 YLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLV-----PKP 472 (595)
Q Consensus 398 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~ 472 (595)
+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.... ...
T Consensus 341 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 418 (537)
T 3fp2_A 341 -PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418 (537)
T ss_dssp -TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH
Confidence 3356789999999999999999999999998874 566788999999999999999999999998764311 122
Q ss_pred hhHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007640 473 FMYNPVIDGFCKA----------GNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 473 ~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (595)
..+..+...+... |++++|...++++.+.. +.+...+..+...+...|++++|...|+++++..
T Consensus 419 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 2345556777788 99999999999999874 3467889999999999999999999999999864
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=2.9e-18 Score=171.69 Aligned_cols=327 Identities=13% Similarity=0.016 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007640 192 PMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGL 271 (595)
Q Consensus 192 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 271 (595)
..+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|+++.+..+ .+...+..+...+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHHHH
Confidence 344444455555555555555555554432 23344455555555555555555555555544432 2344445555555
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC
Q 007640 272 SRIGEVKKAFEFFYDMGSFGCSP----DIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGK 347 (595)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 347 (595)
...|++++|...|+++.+. .| +...+..+...+. ...+..+...+...|+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE------------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTTC
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH------------------------HHHHHHHHHHHHHccC
Confidence 5555555555555554432 22 1111111110000 0011122455566666
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007640 348 MDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDE 427 (595)
Q Consensus 348 ~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 427 (595)
+++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++
T Consensus 136 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 136 YTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666666665543 3445556666666666666666666666666543 33555666666666666666666666666
Q ss_pred HhhCCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHHcCCHHHH
Q 007640 428 MKGKNLSPNVYTFT------------ILINALCKENRLNDARRFLKQLKWNDLVPKP----FMYNPVIDGFCKAGNVDEA 491 (595)
Q Consensus 428 m~~~~~~p~~~~~~------------~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A 491 (595)
..+.. +.+...+. .+...+.+.|++++|...++++.+.... +. ..+..+...+.+.|++++|
T Consensus 214 a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 214 CLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHH
Confidence 65542 22333222 2244566677777777777766654422 22 2244456666677777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 492 NVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCL 552 (595)
Q Consensus 492 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 552 (595)
...+++..+.. +.+..++..+...+...|++++|...|+++++.. +.+...+..+..+.
T Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 77777766652 2256666667777777777777777777776643 33344454444443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=2.8e-18 Score=171.84 Aligned_cols=320 Identities=10% Similarity=0.020 Sum_probs=245.2
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 007640 225 STFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLIS 304 (595)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 304 (595)
++..+..+...+...|++++|+..|+++.+..+ .+..++..+...+...|++++|...|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 345666777777788888888888888777654 466777777777777788888887777776542 235566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCC----CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007640 305 GLCRVNEVARGHELLKEVKFKSEFSP----DVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKV 380 (595)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~~~~~~~p----~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~ 380 (595)
.+...|++++|.+.++++.... | +...+..+...+. ...+..+...+...
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN---PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDG 133 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHT
T ss_pred HHHHcCChHHHHHHHHHHHhcC---CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHc
Confidence 7777777777777777776533 3 2222222222110 11233456788999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007640 381 GNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFL 460 (595)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 460 (595)
|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+
T Consensus 134 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 134 ADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998864 4577889999999999999999999999998874 668899999999999999999999999
Q ss_pred HHHHhCCCCCCHhhHH------------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHH
Q 007640 461 KQLKWNDLVPKPFMYN------------PVIDGFCKAGNVDEANVIVAEMEEKRCKPDK----VTFTILIIGHCMKGRMV 524 (595)
Q Consensus 461 ~~~~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~ 524 (595)
+...+.... +...+. .+...+.+.|++++|...++++.+.... +. ..+..+...+...|+++
T Consensus 212 ~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 212 RECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHH
Confidence 999876533 344333 2366789999999999999999886422 33 23556778899999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 007640 525 EAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLP 577 (595)
Q Consensus 525 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 577 (595)
+|...++++++.. +.+..++..++.+|.+.|++++|.+.++++.+..+....
T Consensus 290 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 341 (359)
T 3ieg_A 290 EAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Confidence 9999999999864 557889999999999999999999999999998765443
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=1.6e-16 Score=166.80 Aligned_cols=353 Identities=9% Similarity=-0.022 Sum_probs=252.0
Q ss_pred CCHHHHHHHHHHHHH----cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHhccCCCCccC
Q 007640 154 HSFKTYNLVMRSLCE----MGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIR----AGKCDAAKGLLSQFRPGEVTMS 225 (595)
Q Consensus 154 ~~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~ 225 (595)
-++..+..+...|.. .+++++|+..|+...+.| +...+..+...|.. .+++++|...|++..+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 366777777777777 778888888888777754 56677777777777 777888888888777654 5
Q ss_pred HHHHHHHHHHHHH----cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHH
Q 007640 226 TFMYNSLLNALVK----QNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSR----IGEVKKAFEFFYDMGSFGCSPDIV 297 (595)
Q Consensus 226 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ 297 (595)
...+..|...|.. .+++++|..+|++..+.+ +...+..|...|.. .++.++|++.|++..+.| +..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 5666777777777 677888888888777643 55667777777766 677888888887777654 566
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHH
Q 007640 298 TYNTLISGLCR----VNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCK----LGKMDKATGIYNEMNSCGIKPSAVT 369 (595)
Q Consensus 298 t~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~ 369 (595)
.+..+...|.. .++.++|.+.|++....+ +...+..+...|.. .+++++|..+|++..+.| +...
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 257 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIA 257 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 77777777776 677888888887776543 45566667666665 677788888887777654 4455
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHhhCCCCCCHHHH
Q 007640 370 FNVLIDGFGK----VGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRN-----GQLNQGLKLCDEMKGKNLSPNVYTF 440 (595)
Q Consensus 370 ~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~~~~p~~~~~ 440 (595)
+..+...|.. .++.++|...|++..+.| +...+..+...|... +++++|+..|++..+.+ +...+
T Consensus 258 ~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 331 (490)
T 2xm6_A 258 QFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ 331 (490)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence 5666666666 677788888887777654 455666677777766 77788888877777765 45566
Q ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007640 441 TILINALCKEN---RLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCK----AGNVDEANVIVAEMEEKRCKPDKVTFTIL 513 (595)
Q Consensus 441 ~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 513 (595)
..+...|...| +.++|.+++++..+.+ ++..+..|...|.. .+++++|.+.|++..+.| +...+..+
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~L 405 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQL 405 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 66766666655 6777777777777653 56677777777777 677778888877777764 46667777
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCC
Q 007640 514 IIGHCM----KGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 514 i~~~~~----~g~~~~A~~~~~~m~~~g 537 (595)
...|.. .+++++|..+|++..+.+
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 777776 677888888887777765
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=1e-16 Score=168.36 Aligned_cols=366 Identities=10% Similarity=-0.037 Sum_probs=280.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHH----cCCHhHH
Q 007640 174 SVQVVFDYMRSDGHLPNSPMIEFFVSSCIR----AGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVK----QNNADEA 245 (595)
Q Consensus 174 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A 245 (595)
.++..+....+.| +...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .++.++|
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 3455555555543 66777777777777 788888888888887654 56677778888888 7888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 007640 246 VYMFKEYFRLYSQPDTWTFNILIQGLSR----IGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCR----VNEVARGHE 317 (595)
Q Consensus 246 ~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~ 317 (595)
..+|++..+.| +...+..|...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|.+
T Consensus 99 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 99 VIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 88888887743 56677777777777 778888888888887765 56677777777776 678888888
Q ss_pred HHHHHHhcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 007640 318 LLKEVKFKSEFSPDVVTYTSVISGYCK----LGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGK----VGNMVSAEYM 389 (595)
Q Consensus 318 ~~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~ 389 (595)
.|++....+ +...+..+...|.. .+++++|.++|++..+.| +...+..+...|.. .+++++|..+
T Consensus 173 ~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 173 WYSKAAEQG----NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHCC----CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 888877643 56777778777777 788888888888888764 55667777777765 7788888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHH
Q 007640 390 RERMLSFGYLPDVVTFSSLIDGYCR----NGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKE-----NRLNDARRFL 460 (595)
Q Consensus 390 ~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~-----g~~~~A~~~~ 460 (595)
|++..+.| +...+..+...|.. .++.++|+..|++..+.+ +...+..+...|... +++++|...+
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 88888764 45666677777777 788888888888887765 556777777777776 7888888888
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 007640 461 KQLKWNDLVPKPFMYNPVIDGFCKAG---NVDEANVIVAEMEEKRCKPDKVTFTILIIGHCM----KGRMVEAISIFNKM 533 (595)
Q Consensus 461 ~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m 533 (595)
++..+.+ +...+..+...|...| ++++|.++|++..+.| +...+..+...|.. .+++++|..+|++.
T Consensus 320 ~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 320 TKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 8888765 4567777777777755 7788888888888764 67777888888877 78888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 007640 534 LRIGCAPDDITVNSLISCLLK----GGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 534 ~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 573 (595)
.+.| +...+..|...|.+ .+++++|.++++++.+.++
T Consensus 394 ~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 394 AEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 8765 56777788888887 7888888888888887763
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=7.9e-18 Score=166.57 Aligned_cols=292 Identities=11% Similarity=0.015 Sum_probs=181.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHH
Q 007640 260 DTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVI 339 (595)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll 339 (595)
+...+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|..+++++.... +.+...+..+.
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~ 97 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVG 97 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHH
Confidence 34445555555555566666666665555432 2233444445555555666666666666655433 23445555666
Q ss_pred HHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 007640 340 SGYCKLG-KMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQL 418 (595)
Q Consensus 340 ~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 418 (595)
..+...| ++++|...|+++.+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 6666666 6666666666665543 2344556666666666666666666666665543 12344555566667777777
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--------CCCCHhhHHHHHHHHHHcCCHHH
Q 007640 419 NQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWND--------LVPKPFMYNPVIDGFCKAGNVDE 490 (595)
Q Consensus 419 ~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~li~~~~~~g~~~~ 490 (595)
++|...+++..+.. +.+..++..+...+...|++++|...++++.+.. ......++..+...+...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 77777777766653 4456667777777777777777777777665431 12335677788888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHH
Q 007640 491 ANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCL-LKGGMPN 559 (595)
Q Consensus 491 A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~~~ 559 (595)
|...++++.+.. +.+...+..+...+...|++++|...++++++.. +.+...+..+..++ ...|+.+
T Consensus 255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 888888877653 2356777778888888888888888888877653 44666777777777 4555443
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=3.9e-16 Score=165.62 Aligned_cols=411 Identities=9% Similarity=0.023 Sum_probs=305.8
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHH
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLL 233 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 233 (595)
.+...|..++. +.+.|++++|..+|+++.+.. |.+...|...+..+.+.|++++|..+|+++.... |+...|..++
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 58889999998 488999999999999999865 7788899999999999999999999999999864 5777887777
Q ss_pred HHH-HHcCCHhHHHH----HHHHHHHc-CCC-CCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHhhCCCCCCHH
Q 007640 234 NAL-VKQNNADEAVY----MFKEYFRL-YSQ-PDTWTFNILIQGLSR---------IGEVKKAFEFFYDMGSFGCSPDIV 297 (595)
Q Consensus 234 ~~~-~~~g~~~~A~~----~~~~m~~~-~~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~ 297 (595)
... ...|+.+.|.+ +|++.+.. |.. ++...|...+....+ .|++++|..+|++..+....+...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 544 35677777665 77776553 433 356778887776655 688999999999998731111123
Q ss_pred HHHHHHHHH-------------HhcCCHHHHHHHHHHHH------hcC--CCCCC--------HhhHHHHHHHHHhc---
Q 007640 298 TYNTLISGL-------------CRVNEVARGHELLKEVK------FKS--EFSPD--------VVTYTSVISGYCKL--- 345 (595)
Q Consensus 298 t~~~li~~~-------------~~~g~~~~A~~~~~~~~------~~~--~~~p~--------~~~~~~ll~~~~~~--- 345 (595)
.|....... .+.++++.|..++..+. ... .++|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 333222211 12345677777766532 110 12333 24555555433322
Q ss_pred -CCh----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCCHHHHH
Q 007640 346 -GKM----DKATGIYNEMNSCGIKPSAVTFNVLIDGFGK-------VGNMV-------SAEYMRERMLSFGYLPDVVTFS 406 (595)
Q Consensus 346 -g~~----~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p~~~~~~ 406 (595)
++. +++..+|++..... +.+...|..++..+.+ .|+++ +|..++++..+.-.+.+...|.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 232 47788999988753 4567788888877765 79987 8999999998732344688999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HH
Q 007640 407 SLIDGYCRNGQLNQGLKLCDEMKGKNLSPN-V-YTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDG-FC 483 (595)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~-~~ 483 (595)
.++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|.++|++..+... .+...|...+.. +.
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHH
Confidence 9999999999999999999999986 443 3 5888889989999999999999999987642 233344333322 34
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHH
Q 007640 484 KAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIG-CAPD--DITVNSLISCLLKGGMPNE 560 (595)
Q Consensus 484 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~l~~~~~~~g~~~~ 560 (595)
..|+.++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++.+..+ ..|+ ...|...+......|+.+.
T Consensus 403 ~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~ 481 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 481 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH
T ss_pred HcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 6899999999999998763 3368889999999999999999999999999864 2332 4588888888899999999
Q ss_pred HHHHHHHHHhcCC
Q 007640 561 AFRIMQRASEDQN 573 (595)
Q Consensus 561 A~~~~~~~~~~~~ 573 (595)
+.++.+++.+..+
T Consensus 482 ~~~~~~r~~~~~p 494 (530)
T 2ooe_A 482 ILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHCc
Confidence 9999999988765
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.7e-17 Score=164.21 Aligned_cols=292 Identities=12% Similarity=0.004 Sum_probs=206.9
Q ss_pred cCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 007640 224 MSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLI 303 (595)
Q Consensus 224 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 303 (595)
.+...+..++..+...|++++|..+|+++.+..+ .+...+..++..+...|++++|..+++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 3445566667777777777777777777776654 345566666677777777777777777776532 33566677777
Q ss_pred HHHHhcC-CHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007640 304 SGLCRVN-EVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGN 382 (595)
Q Consensus 304 ~~~~~~g-~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 382 (595)
..+...| ++++|.+.|+++.... +.+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|+
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 7777777 7777777777776543 3345667777777777788888888887777653 3345566667777788888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC--------CCCCHHHHHHHHHHHHHcCCHH
Q 007640 383 MVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKN--------LSPNVYTFTILINALCKENRLN 454 (595)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~--------~~p~~~~~~~ll~~~~~~g~~~ 454 (595)
+++|...++++.+.. +.+...+..+...+...|++++|...+++..+.. .+.+..++..+...+...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 888888888777653 3456777778888888888888888887776531 1334567888888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCH
Q 007640 455 DARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGH-CMKGRM 523 (595)
Q Consensus 455 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~-~~~g~~ 523 (595)
+|...+++..+.... +...+..+...+.+.|++++|.+.++++.+.. +.+...+..+..++ ...|+.
T Consensus 254 ~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 254 EALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 888888888776533 67788888888888888888888888887653 23566777777766 345543
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=4e-18 Score=171.73 Aligned_cols=266 Identities=9% Similarity=-0.065 Sum_probs=183.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 298 TYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGF 377 (595)
Q Consensus 298 t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~ 377 (595)
.+..+...+.+.|++++|...|+++.... +.+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...+
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSF 142 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34445555555555555555555554432 2334455555555555555555555555555433 23444555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHhhCCCCC--CHHHH
Q 007640 378 GKVGNMVSAEYMRERMLSFGYLPDVVTFS---------------SLIDGYCRNGQLNQGLKLCDEMKGKNLSP--NVYTF 440 (595)
Q Consensus 378 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~---------------~li~~~~~~g~~~~A~~l~~~m~~~~~~p--~~~~~ 440 (595)
...|++++|...++++.+.... +...+. ..+..+...|++++|...++++.+.. +. +..++
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~ 220 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQ 220 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cCcccHHHH
Confidence 5555555555555555543211 111111 02333348899999999999988764 22 58889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007640 441 TILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMK 520 (595)
Q Consensus 441 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 520 (595)
..+...+...|++++|...++++..... .+..++..+...+...|++++|...++++.+.. +.+...+..+...|...
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHC
Confidence 9999999999999999999999887653 367889999999999999999999999998763 34678899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007640 521 GRMVEAISIFNKMLRIGCA----------PDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 521 g~~~~A~~~~~~m~~~g~~----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
|++++|...|+++++.... ....+|..++.+|...|++++|..++++.++
T Consensus 299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 9999999999999874211 1268899999999999999999998875543
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=2.1e-17 Score=166.50 Aligned_cols=304 Identities=9% Similarity=-0.053 Sum_probs=163.9
Q ss_pred hcCChHHHHH-HHHhccCCCCc---cCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 007640 203 RAGKCDAAKG-LLSQFRPGEVT---MSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVK 278 (595)
Q Consensus 203 ~~g~~~~A~~-~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 278 (595)
..|++++|.. .+++....... .+...+..+...+.+.|++++|...|+++.+..+ .+..+|..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHH
Confidence 3467777777 77766543221 1244566777788888888888888888877654 46777777888888888888
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 007640 279 KAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEM 358 (595)
Q Consensus 279 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m 358 (595)
+|...|+++.+.. +.+..++..+...+...|++++|.+.++++....+ .+...+..+... .. .
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~-------~~-------~ 178 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP--AYAHLVTPAEEG-------AG-------G 178 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST--TTGGGCC----------------------
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHH-------hh-------h
Confidence 8888888777543 34667777777777788888888888877766431 112222111000 00 0
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH
Q 007640 359 NSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLP-DVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNV 437 (595)
Q Consensus 359 ~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 437 (595)
. .+. ..+.. +..+...|++++|...++++.+..... +..++..+...|...|++++|...++++.... +.+.
T Consensus 179 ~----~~~-~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~ 251 (368)
T 1fch_A 179 A----GLG-PSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDY 251 (368)
T ss_dssp ------------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred h----ccc-HHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCH
Confidence 0 000 00001 111224455555555555554432110 34555555555555555555555555554442 3345
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----------CH
Q 007640 438 YTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKP----------DK 507 (595)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----------~~ 507 (595)
.++..+...+...|++++|...++++.+... .+..++..+...|.+.|++++|...|+++.+..... ..
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 5555555555556666666666555554432 245555566666666666666666666555431110 14
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 007640 508 VTFTILIIGHCMKGRMVEAISIFNK 532 (595)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~ 532 (595)
.+|..+..++...|++++|..++++
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHH
Confidence 5566666666666666666665543
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=3.9e-15 Score=157.97 Aligned_cols=387 Identities=10% Similarity=0.041 Sum_probs=283.0
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC
Q 007640 179 FDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQ 258 (595)
Q Consensus 179 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 258 (595)
|++..+.. |-+...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|++.+...
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 34444443 668889999998 478999999999999998863 6688899999999999999999999999999864
Q ss_pred CCHHHHHHHHHHH-HhcCCHHHHHH----HHHHHhh-CCCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 007640 259 PDTWTFNILIQGL-SRIGEVKKAFE----FFYDMGS-FGCSP-DIVTYNTLISGLCR---------VNEVARGHELLKEV 322 (595)
Q Consensus 259 ~~~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~-~g~~p-~~~t~~~li~~~~~---------~g~~~~A~~~~~~~ 322 (595)
|+...|...+... ...|+.++|.+ +|+.... .|..| +...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5777887777533 45677776655 7776653 35444 45677777776554 68899999999998
Q ss_pred HhcCCCCCCHhhHHHHHHHH-------------HhcCChhHHHHHHHHHH------HCC---CCCC--------HHHHHH
Q 007640 323 KFKSEFSPDVVTYTSVISGY-------------CKLGKMDKATGIYNEMN------SCG---IKPS--------AVTFNV 372 (595)
Q Consensus 323 ~~~~~~~p~~~~~~~ll~~~-------------~~~g~~~~A~~l~~~m~------~~g---~~p~--------~~~~~~ 372 (595)
.... ..+....|....... .+.+++..|..++.++. +.. ++|+ ...|..
T Consensus 157 l~~P-~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~ 235 (530)
T 2ooe_A 157 CVNP-MINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKK 235 (530)
T ss_dssp TTSC-CTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHH
T ss_pred Hhch-hhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHH
Confidence 8621 111123343322211 13456777877777632 211 2444 234544
Q ss_pred HHHHHHhc----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHhh
Q 007640 373 LIDGFGKV----GNM----VSAEYMRERMLSFGYLPDVVTFSSLIDGYCR-------NGQLN-------QGLKLCDEMKG 430 (595)
Q Consensus 373 ll~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~~-------~A~~l~~~m~~ 430 (595)
.+...... ++. ..+..+|++..... +.+...|..++..+.+ .|+++ +|..++++..+
T Consensus 236 ~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~ 314 (530)
T 2ooe_A 236 YIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS 314 (530)
T ss_dssp HHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH
Confidence 44332221 232 36778898888752 3467888888888776 69987 99999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007640 431 KNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKP-FMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVT 509 (595)
Q Consensus 431 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 509 (595)
.-.+.+...|..++..+.+.|++++|..+++++.+.... +. ..|..++..+.+.|++++|.++|++..+.. +.+...
T Consensus 315 ~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~ 392 (530)
T 2ooe_A 315 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHV 392 (530)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHH
T ss_pred HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHH
Confidence 334557889999999999999999999999999986422 33 589999999999999999999999999763 223333
Q ss_pred HHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007640 510 FTILIIG-HCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQ 575 (595)
Q Consensus 510 ~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 575 (595)
|...+.. +...|++++|..+|++.++.. +.+...|..++..+.+.|+.++|+.+|+++++..+.+
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 3332222 346899999999999999854 5568899999999999999999999999999976544
No 23
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=1e-14 Score=161.13 Aligned_cols=403 Identities=13% Similarity=0.117 Sum_probs=211.7
Q ss_pred hhhhcCCCCchhHHHHHHhcCCchHHHHHHHHhhh-CCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCC--CCCC
Q 007640 114 ARYLCEKLSPLNSLEVIKRLDNPKLGLKFLEFSRV-NLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDG--HLPN 190 (595)
Q Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~-~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~ 190 (595)
.+++..+-+|+.+..||..- .+.-..+.+|... ..+-+.++.--...++.|...|.+.+|+++++++.-.+ +.-+
T Consensus 944 arylv~r~d~~lW~~vl~~~--n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n 1021 (1630)
T 1xi4_A 944 SRYLVRRKDPELWGSVLLES--NPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEH 1021 (1630)
T ss_pred HHHHHHhcCHHHHHHHhcCC--cHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccc
Confidence 45666777888888887432 2445567777543 33334566667778999999999999999999998532 1123
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC--------------
Q 007640 191 SPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLY-------------- 256 (595)
Q Consensus 191 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------- 256 (595)
...-+.++.+..+. +..+..+...+..... ...+...+...|.+++|..+|++.....
T Consensus 1022 ~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nld 1093 (1630)
T 1xi4_A 1022 RNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLD 1093 (1630)
T ss_pred HHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHH
Confidence 34444455444333 3333333333332110 1123344444444444444444431000
Q ss_pred -------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007640 257 -------SQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFS 329 (595)
Q Consensus 257 -------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 329 (595)
-.-+..+|..+..++...|++++|.+.|.+. -|...|..++..+.+.|++++|.+.+.......
T Consensus 1094 rAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--- 1164 (1630)
T 1xi4_A 1094 RAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--- 1164 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---
Confidence 0023444555555555555555555555432 244455555555555555555555555444322
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007640 330 PDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLI 409 (595)
Q Consensus 330 p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 409 (595)
++....+.++.+|++.+++++...+ .+ .++...|..+...|...|++++|..+|... ..|..+.
T Consensus 1165 ~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA 1228 (1630)
T 1xi4_A 1165 RESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLA 1228 (1630)
T ss_pred ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHH
Confidence 2222223355555555555432222 11 234444444555555555555555555542 2455555
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHH
Q 007640 410 DGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVD 489 (595)
Q Consensus 410 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 489 (595)
.+|++.|++++|.+.+++. .+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.++
T Consensus 1229 ~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~fe 1297 (1630)
T 1xi4_A 1229 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFE 1297 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHH
Confidence 5555555555555555544 1334555555555555555555544332 2234556667777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHH
Q 007640 490 EANVIVAEMEEKRCKPDKVTFTILIIGHCM--KGRMVEAISIFNKMLRIGCAP------DDITVNSLISCLLKGGMPNEA 561 (595)
Q Consensus 490 ~A~~l~~~m~~~g~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p------~~~~~~~l~~~~~~~g~~~~A 561 (595)
+|+.+++...... +-....|+-+...+++ -++..++.++|..-.. +++ +...|..++-.|.+.|+++.|
T Consensus 1298 EAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA 1374 (1630)
T 1xi4_A 1298 ELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNA 1374 (1630)
T ss_pred HHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 7777776666443 2233345555555544 4455555555553322 222 445677777777777777777
Q ss_pred HHHH
Q 007640 562 FRIM 565 (595)
Q Consensus 562 ~~~~ 565 (595)
...+
T Consensus 1375 ~~tm 1378 (1630)
T 1xi4_A 1375 IITM 1378 (1630)
T ss_pred HHHH
Confidence 6533
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=6.9e-17 Score=162.68 Aligned_cols=232 Identities=9% Similarity=-0.064 Sum_probs=126.5
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 007640 225 STFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLIS 304 (595)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 304 (595)
+...+..+...+.+.|++++|+..|+++++..+ .+..+|..+...|...|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 344577777888888888888888888877654 467778888888888888888888888777542 335667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCC-Hh----------hHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHH
Q 007640 305 GLCRVNEVARGHELLKEVKFKSEFSPD-VV----------TYTSVISGYCKLGKMDKATGIYNEMNSCGIK-PSAVTFNV 372 (595)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~----------~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~~~~~ 372 (595)
.|...|++++|.+.++++.... |+ .. .+..+...+.+.|++++|...|+++.+.... ++..++..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN---PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC---HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC---ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 7777777777777777776533 22 11 1222344555555555555555555543210 03444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 007640 373 LIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENR 452 (595)
Q Consensus 373 ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 452 (595)
+...|...|++++|...++++.+.. +.+..+|..+..+|...|++++|...|+++.+.. +.+..++..+..+|.+.|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 4444444455555554444444432 1233444444444444444444444444444331 2233444444444444444
Q ss_pred HHHHHHHHHHH
Q 007640 453 LNDARRFLKQL 463 (595)
Q Consensus 453 ~~~A~~~~~~~ 463 (595)
+++|...++++
T Consensus 297 ~~~A~~~~~~a 307 (365)
T 4eqf_A 297 YREAVSNFLTA 307 (365)
T ss_dssp CHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.9e-15 Score=157.83 Aligned_cols=370 Identities=9% Similarity=-0.057 Sum_probs=233.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHhccCC--------CCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC---
Q 007640 188 LPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPG--------EVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLY--- 256 (595)
Q Consensus 188 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--- 256 (595)
......|+.+...+...|++++|++.|++..+. .-+....+|+.+..+|...|++++|...+++..+..
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344567888888899999999999999886532 123346778888999999999999998888876531
Q ss_pred C----CCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhcCC
Q 007640 257 S----QPDTWTFNILIQGLSRI--GEVKKAFEFFYDMGSFGCSPDIVTYNTLISG---LCRVNEVARGHELLKEVKFKSE 327 (595)
Q Consensus 257 ~----~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~---~~~~g~~~~A~~~~~~~~~~~~ 327 (595)
. .....++..+..++... +++++|...|++..+.. +-+...+..+... +...++.++|++.+++.....
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 0 12345566655555554 46889999998887642 2234445444444 345577788888888877654
Q ss_pred CCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007640 328 FSPDVVTYTSVISGYCK----LGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVV 403 (595)
Q Consensus 328 ~~p~~~~~~~ll~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 403 (595)
+.+...+..+...+.. .|++++|.+++++..... +.+...+..+...|...|++++|...+++..+.. +-+..
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 282 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAY 282 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHH
Confidence 3345555555554443 467788888888887754 4566778888888899999999999998888753 33566
Q ss_pred HHHHHHHHHHHc-------------------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007640 404 TFSSLIDGYCRN-------------------GQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLK 464 (595)
Q Consensus 404 ~~~~li~~~~~~-------------------g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 464 (595)
++..+..+|... +..++|...+++..+.. +.+..++..+...+...|++++|...|++..
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL 361 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEF 361 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHH
Confidence 777777666432 23456666676666543 3445567777778888888888888888877
Q ss_pred hCCCCCCHh--hHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007640 465 WNDLVPKPF--MYNPVID-GFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPD 541 (595)
Q Consensus 465 ~~~~~p~~~--~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 541 (595)
+....+... .+..+.. .+...|++++|+..|++..+. .|+..... +....+.+++++.++.. +.+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~~~~~~~l~~~-p~~ 429 (472)
T 4g1t_A 362 SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQKIAKMRLSKN-GAD 429 (472)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHHHHHHHHHHHC-C-C
T ss_pred hcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHHHHHHHHHHhC-CCC
Confidence 665433221 2222222 234567888888888887765 34433222 12234455566665544 667
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007640 542 DITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQ 575 (595)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 575 (595)
..+|..|+.+|...|++++|++.++++++.++..
T Consensus 430 ~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~ 463 (472)
T 4g1t_A 430 SEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463 (472)
T ss_dssp TTHHHHHHHHHHHHHHCC----------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 7899999999999999999999999999877644
No 26
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=2.9e-14 Score=157.56 Aligned_cols=398 Identities=14% Similarity=0.124 Sum_probs=290.6
Q ss_pred hcCCCCchhHHHHHHhc---CCchHHHHHHHHhhhCCC-CCCCHHHHHHHH---------------------------HH
Q 007640 117 LCEKLSPLNSLEVIKRL---DNPKLGLKFLEFSRVNLS-LNHSFKTYNLVM---------------------------RS 165 (595)
Q Consensus 117 ~~~~~~~~~~~~~l~~~---~~~~~a~~~~~~~~~~~~-~~~~~~~y~~li---------------------------~~ 165 (595)
+.+..+|+.+....+.+ +.+..++.+++-....+. ++.+....+.|+ ..
T Consensus 979 L~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~I 1058 (1630)
T 1xi4_A 979 LSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANI 1058 (1630)
T ss_pred cccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHH
Confidence 45567888887666655 677888887776654433 444455555554 34
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHH
Q 007640 166 LCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEA 245 (595)
Q Consensus 166 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 245 (595)
+...|++++|..+|++.. -.....+.++. ..+++++|.++.+++. +..+|..+..++.+.|++++|
T Consensus 1059 ai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHH
Confidence 556777777777777642 11112222322 6677888888877652 467888999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007640 246 VYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFK 325 (595)
Q Consensus 246 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~ 325 (595)
++.|.+. .|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.+++++..... .
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 9999663 578889999999999999999999999877654 34334445999999999988644432 1
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007640 326 SEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTF 405 (595)
Q Consensus 326 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 405 (595)
.++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++. .+..+|
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aW 1253 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 1253 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHH
Confidence 356677888999999999999999999985 48999999999999999999999876 366899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 007640 406 SSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKA 485 (595)
Q Consensus 406 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 485 (595)
..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++.....+ .-....|+.+...|++.
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC
Confidence 99999999999999998876543 3356677899999999999999999999887665 34566788888888875
Q ss_pred C--CHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007640 486 G--NVDEANVIVAEMEEKRCKP------DKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGM 557 (595)
Q Consensus 486 g--~~~~A~~l~~~m~~~g~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 557 (595)
. +..++.++|..-.. ++| +...|.-++..|.+.|+++.|.. .|++. +++..-....-....+..+
T Consensus 1328 ~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~---tm~~h--~~~a~~~~~Fk~~i~kv~n 1400 (1630)
T 1xi4_A 1328 KPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII---TMMNH--PTDAWKEGQFKDIITKVAN 1400 (1630)
T ss_pred CHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH---HHHhc--cHhhhhhHHHHHHhccccc
Confidence 3 56666666654332 222 46779999999999999999986 44442 3343333344445556666
Q ss_pred HHHHHHHHHHHHhcC
Q 007640 558 PNEAFRIMQRASEDQ 572 (595)
Q Consensus 558 ~~~A~~~~~~~~~~~ 572 (595)
.+--.+...-.++..
T Consensus 1401 ~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1401 VELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHHHHhhC
Confidence 555444444444443
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=1.4e-16 Score=160.48 Aligned_cols=276 Identities=11% Similarity=-0.086 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHH
Q 007640 261 TWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVIS 340 (595)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~ 340 (595)
...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|.+.|+++.... +.+..++..+..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 141 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALAV 141 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence 3345556666666666666666666665432 2345556666666666666666666666655433 233455555666
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 007640 341 GYCKLGKMDKATGIYNEMNSCGIKPSAV-TFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLN 419 (595)
Q Consensus 341 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 419 (595)
.|...|++++|...|+++.+.. |+.. .+..+. .....+..+...+...|+++
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHH
Confidence 6666666666666666655421 2110 010000 01223344456666667777
Q ss_pred HHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 007640 420 QGLKLCDEMKGKNLSP--NVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAE 497 (595)
Q Consensus 420 ~A~~l~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 497 (595)
+|...++++.+.. +. +..++..+...|...|++++|.+.++++.+... .+..+|..+...|...|++++|...|++
T Consensus 195 ~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 195 GVKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTR 272 (365)
T ss_dssp HHHHHHHHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777666553 22 566677777777777777777777777766542 3566777777777777777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---C--------CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007640 498 MEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGC---A--------PDDITVNSLISCLLKGGMPNEAFRIMQ 566 (595)
Q Consensus 498 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~--------p~~~~~~~l~~~~~~~g~~~~A~~~~~ 566 (595)
+.+.. +.+..++..+..+|...|++++|...|+++++..- . .+..+|..+..++...|+.+.+.+..+
T Consensus 273 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 273 ALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77652 22466777777777778888888888877776320 0 135677888888888888888887776
Q ss_pred HHH
Q 007640 567 RAS 569 (595)
Q Consensus 567 ~~~ 569 (595)
+..
T Consensus 352 ~~l 354 (365)
T 4eqf_A 352 GDL 354 (365)
T ss_dssp TCC
T ss_pred hhH
Confidence 543
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=1.9e-16 Score=156.32 Aligned_cols=279 Identities=8% Similarity=-0.060 Sum_probs=183.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHH
Q 007640 263 TFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGY 342 (595)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~ 342 (595)
.+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|.+.++++.... +.+..++..+...+
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSH 99 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHHHHH
Confidence 44455556666666666666666665432 2244555555566666666666666666655443 23445555555566
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HH-HHHHcCCHHH
Q 007640 343 CKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSL-ID-GYCRNGQLNQ 420 (595)
Q Consensus 343 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~-~~~~~g~~~~ 420 (595)
...|++++|.+.++++.+.. +.+...+..+... .|+......+ .. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHH
Confidence 66666666666666655532 1111111111000 0111111112 12 2666778888
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007640 421 GLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEE 500 (595)
Q Consensus 421 A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 500 (595)
|...++++.+.. +.+..++..+...+...|++++|.+.++++.+... .+..++..+...+...|++++|...++++.+
T Consensus 157 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888887664 45778888888888888999999999888877653 3677888999999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 501 KRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAP-----------DDITVNSLISCLLKGGMPNEAFRIMQRAS 569 (595)
Q Consensus 501 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 569 (595)
.. +.+...+..+...+...|++++|...++++++..... +...+..+..++.+.|++++|..++++++
T Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 63 3367888899999999999999999999988753111 46788899999999999999999887655
Q ss_pred h
Q 007640 570 E 570 (595)
Q Consensus 570 ~ 570 (595)
+
T Consensus 314 ~ 314 (327)
T 3cv0_A 314 E 314 (327)
T ss_dssp H
T ss_pred H
Confidence 4
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=7.1e-16 Score=152.23 Aligned_cols=278 Identities=10% Similarity=-0.036 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 007640 227 FMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGL 306 (595)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 306 (595)
..+..+...+...|++++|..+|+++.+..+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 3445566666677777777777777766553 356666677777777777777777777766542 33566666777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHH
Q 007640 307 CRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLID--GFGKVGNMV 384 (595)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~--~~~~~g~~~ 384 (595)
...|++++|.+.++++.... +.+...+..+... .|+......+.. .+...|+++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS--TTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 77777777777777766543 1122222222000 000111111111 133344444
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007640 385 SAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLK 464 (595)
Q Consensus 385 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 464 (595)
+|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 156 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444332 1234444444455555555555555555544432 3344455555555555555555555555554
Q ss_pred hCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007640 465 WNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKP-----------DKVTFTILIIGHCMKGRMVEAISIFNKM 533 (595)
Q Consensus 465 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m 533 (595)
+... .+..++..+...+...|++++|.+.++++.+..... +...|..+..++...|++++|..++++.
T Consensus 234 ~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 234 DINP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HcCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4332 234455555555555566666666555555432110 2445556666666666666666655543
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=1.5e-16 Score=158.35 Aligned_cols=288 Identities=14% Similarity=0.108 Sum_probs=117.3
Q ss_pred HHHHHhcCCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007640 127 LEVIKRLDNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGK 206 (595)
Q Consensus 127 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 206 (595)
..+|..+++-+.|..|++-. +++.+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|+
T Consensus 10 ~~ll~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 10 QVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCC
Confidence 34455556667777777665 2335888888888888888888888864 3566688888888888888
Q ss_pred hHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007640 207 CDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYD 286 (595)
Q Consensus 207 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 286 (595)
+++|+..++...+. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|..+|..
T Consensus 77 ~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 77 WEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp ----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888877766653 3456778888888888888888777664 36667888888888888888888888886
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 007640 287 MGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPS 366 (595)
Q Consensus 287 m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~ 366 (595)
+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ...
T Consensus 148 a---------~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ 206 (449)
T 1b89_A 148 V---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVH 206 (449)
T ss_dssp T---------TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTC
T ss_pred h---------hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhC
Confidence 6 36788888888888888888888877 25678888888888888888885544432 233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhhCCCCC------CHH
Q 007640 367 AVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRN--GQLNQGLKLCDEMKGKNLSP------NVY 438 (595)
Q Consensus 367 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~~~~p------~~~ 438 (595)
+.-...++..|.+.|.+++|..+++...... +.....|+-|.-+|++- ++..+.+++|.. +.+++| +..
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~ 283 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAH 283 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTT
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHH
Confidence 3335567778888888888888888877654 44566777776666654 233344443331 112222 345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 007640 439 TFTILINALCKENRLNDARRFL 460 (595)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~ 460 (595)
.|..+...|.+.++++.|...+
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhchHHHHHHHH
Confidence 5677777777888888776643
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=2.9e-16 Score=156.33 Aligned_cols=284 Identities=13% Similarity=0.115 Sum_probs=138.0
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHH
Q 007640 167 CEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAV 246 (595)
Q Consensus 167 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 246 (595)
-+.|++++|.++++++. ++.+|..++.++.+.|++++|++.|.+. +|...|..++..+...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 36778999999999883 2349999999999999999999999653 46779999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007640 247 YMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKS 326 (595)
Q Consensus 247 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~ 326 (595)
..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 987777663 4567889999999999999999998885 477789999999999999999999999976
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007640 327 EFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFS 406 (595)
Q Consensus 327 ~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 406 (595)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ...+.-..
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHH
Confidence 37999999999999999999999998 37899999999999999999996555442 23444566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCC------CHhhHHHHH
Q 007640 407 SLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKW-NDLVP------KPFMYNPVI 479 (595)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~p------~~~~~~~li 479 (595)
.++..|.+.|++++|..+++...... +.....|+-|..+|++- ++++.++.++.... .+++| +...|..+.
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 79999999999999999999998776 66778888888877764 34444444443322 23322 466899999
Q ss_pred HHHHHcCCHHHHHHH
Q 007640 480 DGFCKAGNVDEANVI 494 (595)
Q Consensus 480 ~~~~~~g~~~~A~~l 494 (595)
..|.+.++++.|...
T Consensus 290 ~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 290 FLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHTTCHHHHHHH
T ss_pred HHHHhhchHHHHHHH
Confidence 999999999988763
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=3.1e-15 Score=156.14 Aligned_cols=366 Identities=12% Similarity=-0.028 Sum_probs=253.5
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCC-----
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSD--------GHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPG----- 220 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 220 (595)
.....||.|..++...|++++|++.|++..+. ..+....+|..+...|...|++++|...++++.+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34568999999999999999999999987652 12445678999999999999999999998876531
Q ss_pred --CCccCHHHHHHHHHHHHHcC--CHhHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHhhCCCC
Q 007640 221 --EVTMSTFMYNSLLNALVKQN--NADEAVYMFKEYFRLYSQPDTWTFNILIQG---LSRIGEVKKAFEFFYDMGSFGCS 293 (595)
Q Consensus 221 --~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~ 293 (595)
.......++..+..++.+.| ++++|+..|++.++..+ .+...+..+..+ +...++.++|++.+++..+.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 11234567777777776654 68999999999998764 356666655555 345677889999998887643 3
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 007640 294 PDIVTYNTLISGLCR----VNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVT 369 (595)
Q Consensus 294 p~~~t~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 369 (595)
.+..++..+...+.. .+++++|.+.+++..... +.+...+..+...|...|++++|...|++..+.. +-+...
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 283 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYL 283 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHH
Confidence 355666666555554 467889999999887654 4567788999999999999999999999998864 345566
Q ss_pred HHHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 007640 370 FNVLIDGFGKV-------------------GNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKG 430 (595)
Q Consensus 370 ~~~ll~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (595)
+..+..+|... +..+.|...++...+.. +.+...+..+...|...|++++|...|++..+
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 66666555322 23567777888777653 23456788899999999999999999999987
Q ss_pred CCCCCCHH--HHHHHHH-HHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 007640 431 KNLSPNVY--TFTILIN-ALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDK 507 (595)
Q Consensus 431 ~~~~p~~~--~~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 507 (595)
....+... .+..+.. .+...|+.++|+..+++..+.. |+.... .+..+.+.+++++..+.. +.+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~---------~~~~~~l~~~~~~~l~~~-p~~~ 430 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREK---------EKMKDKLQKIAKMRLSKN-GADS 430 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHH---------HHHHHHHHHHHHHHHHHC-C-CT
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHH---------HHHHHHHHHHHHHHHHhC-CCCH
Confidence 65333221 2233332 2346799999999999998765 332222 122344556666666553 3467
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007640 508 VTFTILIIGHCMKGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (595)
.+|..+...|...|++++|++.|++.++.+
T Consensus 431 ~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 431 EALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp THHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 899999999999999999999999999865
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=2.3e-15 Score=146.22 Aligned_cols=251 Identities=12% Similarity=0.037 Sum_probs=147.3
Q ss_pred HHHHHcCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCC
Q 007640 164 RSLCEMGLHDSVQVVFDYMRSDGHLPNS--PMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNN 241 (595)
Q Consensus 164 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 241 (595)
+-....|++..|+..++..... .|+. .....+.++|...|+++.|+..++.. -+|+..++..+...+...|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCc
Confidence 3445567777777766654432 2222 34455666777777777766655431 24455666666666766777
Q ss_pred HhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007640 242 ADEAVYMFKEYFRLYSQP-DTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLK 320 (595)
Q Consensus 242 ~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 320 (595)
.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777777766654323 444555556666777777777776665 3456666666666777777777777776
Q ss_pred HHHhcCCCCCCHhhH---HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007640 321 EVKFKSEFSPDVVTY---TSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFG 397 (595)
Q Consensus 321 ~~~~~~~~~p~~~~~---~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 397 (595)
++.... |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...+++..+..
T Consensus 155 ~~~~~~---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 155 KMQDQD---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHC---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhC---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 666543 332211 112233334466666666666666542 4455666666666666666666666666665542
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHhhC
Q 007640 398 YLPDVVTFSSLIDGYCRNGQLNQ-GLKLCDEMKGK 431 (595)
Q Consensus 398 ~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~ 431 (595)
+-+..++..++..+...|+.++ +.++++++.+.
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 2355566666666666666654 44566665554
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=3.4e-15 Score=144.96 Aligned_cols=253 Identities=11% Similarity=0.052 Sum_probs=193.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhc
Q 007640 268 IQGLSRIGEVKKAFEFFYDMGSFGCSPDI--VTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKL 345 (595)
Q Consensus 268 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 345 (595)
++-....|++..|+..++..... .|+. .....+.++|...|+++.|...++.. .+|+..++..+...+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCC
Confidence 45566789999999988876533 3443 35566778899999999988766441 356777888888889999
Q ss_pred CChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007640 346 GKMDKATGIYNEMNSCGIKP-SAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKL 424 (595)
Q Consensus 346 g~~~~A~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 424 (595)
++.++|++.++++...+..| +...+..+..++...|++++|...+++ +.+...+..++..+.+.|++++|...
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999988876545 455566677888999999999998887 35778888888999999999999999
Q ss_pred HHHHhhCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007640 425 CDEMKGKNLSPNVYTF---TILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 425 ~~~m~~~~~~p~~~~~---~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
++++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.++..++.+..++.+.|++++|...++++.+.
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99988764 443211 122233344588999999999988774 457888899999999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC
Q 007640 502 RCKPDKVTFTILIIGHCMKGRMVE-AISIFNKMLRIG 537 (595)
Q Consensus 502 g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g 537 (595)
. +-+..++..++..+...|+.++ +.++++++++..
T Consensus 230 ~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 230 D-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred C-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 4 3377788888888888888876 568888888753
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=8.5e-18 Score=179.92 Aligned_cols=117 Identities=18% Similarity=0.192 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhcc---CCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007640 192 PMIEFFVSSCIRAGKCDAAKGLLSQFR---PGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILI 268 (595)
Q Consensus 192 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 268 (595)
.+|+.+|.+|++.|++++|.++|++|. ..|+.||+.+||+||++|++.|++++|.++|++|.+.|+.||.+|||+||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 355566666666666666666655443 23556666666666666666666666666666666666666666666666
Q ss_pred HHHHhcCC-HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 007640 269 QGLSRIGE-VKKAFEFFYDMGSFGCSPDIVTYNTLISGLCR 308 (595)
Q Consensus 269 ~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 308 (595)
.++++.|+ .++|.++|++|.+.|+.||..+|+.++.+..+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 66666665 35666666666666666666666666655444
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=3.2e-17 Score=175.50 Aligned_cols=115 Identities=14% Similarity=0.144 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007640 438 YTFTILINALCKENRLNDARRFLKQLKW---NDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILI 514 (595)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 514 (595)
.||++||++||+.|++++|.++|++|.+ .|+.||..+||+||.+||+.|++++|.++|++|.+.|+.||.+||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3445555555555555555555444332 2444555555555555555555555555555555555555555555555
Q ss_pred HHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 515 IGHCMKGR-MVEAISIFNKMLRIGCAPDDITVNSLISCL 552 (595)
Q Consensus 515 ~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 552 (595)
.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 55555444 244455555555555555555555444433
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.66 E-value=1.1e-14 Score=150.67 Aligned_cols=377 Identities=12% Similarity=0.006 Sum_probs=260.3
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHhccCCCCccCHHHHHHHHHHHH
Q 007640 161 LVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKC---DAAKGLLSQFRPGEVTMSTFMYNSLLNALV 237 (595)
Q Consensus 161 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 237 (595)
.+...+.+.|++++|+++|++..+.| +...+..+...|...|+. ++|...|++..+. ++..+..|...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 36677889999999999999998876 333555666777778888 8999999998864 5566777777566
Q ss_pred HcC-----CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 007640 238 KQN-----NADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVK---KAFEFFYDMGSFGCSPDIVTYNTLISGLCRV 309 (595)
Q Consensus 238 ~~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 309 (595)
..+ +.++|..+|++..+.|. ++ .+..|...|...+..+ ++.+.+......| +......+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 555 78899999999998664 33 6777778887766543 4555555555444 455666777788877
Q ss_pred CCH----HHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--
Q 007640 310 NEV----ARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLG---KMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKV-- 380 (595)
Q Consensus 310 g~~----~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~-- 380 (595)
+.+ +.+..+++.... .+...+..|...|.+.| +.++|++.|++..+.| +++...+..|...|...
T Consensus 155 ~~~~~~~~~a~~~~~~a~~-----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~ 228 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALN-----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATL 228 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTT-----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGG
T ss_pred CCcccCHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCC
Confidence 744 444555555432 23348888999999999 9999999999999988 56666656777777655
Q ss_pred --CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC----
Q 007640 381 --GNMVSAEYMRERMLSFGYLPDVVTFSSLIDG-Y--CRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKEN---- 451 (595)
Q Consensus 381 --g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g---- 451 (595)
+++++|...|++.. .| +...+..+... + ...+++++|+..|++..+.| +...+..|...|. .|
T Consensus 229 ~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~ 300 (452)
T 3e4b_A 229 GTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVP 300 (452)
T ss_dssp SSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSC
T ss_pred CCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCC
Confidence 79999999999988 43 55666677666 4 46899999999999999887 6778888888887 55
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCC
Q 007640 452 -RLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCK----AGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCM----KGR 522 (595)
Q Consensus 452 -~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~ 522 (595)
++++|.++|++.. . .++..+..|...|.. ..++++|..+|++..+.|. ......|...|.. ..+
T Consensus 301 ~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d 373 (452)
T 3e4b_A 301 ADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPD 373 (452)
T ss_dssp CCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCC
T ss_pred CCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCC
Confidence 9999999999888 3 367788888887776 3499999999999998763 3445566666653 568
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007640 523 MVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 523 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
.++|..+|++..+.| .++.......+......++..+|.++.++..+..
T Consensus 374 ~~~A~~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 374 PLNAYVFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp HHHHHHHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999887 3344333333333344557788888888776653
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=6.6e-14 Score=132.84 Aligned_cols=225 Identities=12% Similarity=0.045 Sum_probs=127.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHHH
Q 007640 334 TYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGY--LPD----VVTFSS 407 (595)
Q Consensus 334 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~~ 407 (595)
.+..+...+...|++++|...|+++.+.. .+...+..+..++...|++++|...+++..+... .++ ...+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44445555555555555555555555443 4445555555555555555555555555544210 011 345555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 007640 408 LIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGN 487 (595)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 487 (595)
+...+...|++++|...+++.... .|+. ..+.+.|++++|...++.+..... .+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhcC
Confidence 556666666666666666665553 2332 234445556666666666655432 234556666666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007640 488 VDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQR 567 (595)
Q Consensus 488 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 567 (595)
+++|...++++.+.. +.+...|..+...+...|++++|+..++++++.. +.+...+..++.++.+.|++++|.+.+++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 666666666666543 2245666666666666667777776666666643 44456666666666667777777776666
Q ss_pred HHhcC
Q 007640 568 ASEDQ 572 (595)
Q Consensus 568 ~~~~~ 572 (595)
+.+..
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 66544
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=3.9e-14 Score=131.17 Aligned_cols=199 Identities=18% Similarity=0.054 Sum_probs=127.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 007640 365 PSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILI 444 (595)
Q Consensus 365 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll 444 (595)
++...+..+...+...|++++|...+++.++.. +.+...+..+...+.+.|++++|+..+++..+.. |.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 444455555555556666666666666555542 2345555555566666666666666666655543 34455556666
Q ss_pred HHHHHc-----------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007640 445 NALCKE-----------NRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTIL 513 (595)
Q Consensus 445 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 513 (595)
..+... |++++|...+++..+..+. +...+..+...+...|++++|...|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666666 8888888888888776533 56778888888888888888888888888776 577888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 514 IIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRAS 569 (595)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 569 (595)
..++...|++++|+..|+++++.. +.+...+..+..++.+.|++++|++.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 888888888888888888888764 5567778888888888888888888887654
No 40
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.62 E-value=1.9e-12 Score=124.29 Aligned_cols=226 Identities=8% Similarity=-0.051 Sum_probs=167.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007640 331 DVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGK----VGNMVSAEYMRERMLSFGYLPDVVTFS 406 (595)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~ 406 (595)
+..++..+...+...|++++|+..|++..+. -+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4456666666777777777777777777763 344566666677777 777777777777777764 566777
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 007640 407 SLIDGYCR----NGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCK----ENRLNDARRFLKQLKWNDLVPKPFMYNPV 478 (595)
Q Consensus 407 ~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 478 (595)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 777888888877777764 66777777777777 788888888888877765 45667777
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007640 479 IDGFCK----AGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCM----KGRMVEAISIFNKMLRIGCAPDDITVNSLIS 550 (595)
Q Consensus 479 i~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 550 (595)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+.++++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777 788888888888887763 56677777778887 888888888888888764 2667777888
Q ss_pred HHHh----cCCHHHHHHHHHHHHhcCCC
Q 007640 551 CLLK----GGMPNEAFRIMQRASEDQNL 574 (595)
Q Consensus 551 ~~~~----~g~~~~A~~~~~~~~~~~~~ 574 (595)
+|.+ .+++++|.++++++.+.++.
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 8887 88888888888888877653
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.61 E-value=5.2e-14 Score=130.38 Aligned_cols=200 Identities=12% Similarity=0.007 Sum_probs=135.3
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHH
Q 007640 153 NHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSL 232 (595)
Q Consensus 153 ~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 232 (595)
+++...+..+...+.+.|++++|+..|++..+.. |.+...+..+...+.+.|++++|+..+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3566677778888888888888888888887765 6677778888888888888888888888877654 4466777777
Q ss_pred HHHHHHc-----------CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 007640 233 LNALVKQ-----------NNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNT 301 (595)
Q Consensus 233 i~~~~~~-----------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 301 (595)
...+.+. |++++|+..|++.++..+ .+...+..+...+...|++++|+..|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7777777 777777777777777654 356677777777777777777777777777655 56677777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 007640 302 LISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMN 359 (595)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 359 (595)
+...+...|++++|...|++..... +.+...+..+...+.+.|++++|...|++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777777777777777777776543 3345666677777777777777777776653
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.7e-13 Score=129.97 Aligned_cols=223 Identities=9% Similarity=-0.003 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCcc--C----HHHHH
Q 007640 157 KTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTM--S----TFMYN 230 (595)
Q Consensus 157 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~~ 230 (595)
..|..+...+...|++++|+..|+++.+.. .+..++..+...+...|++++|...++++.+..... + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456666667777777777777777766654 555666666666666666666666666655432111 1 45556
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 007640 231 SLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVN 310 (595)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 310 (595)
.+...+...|++++|...|++..+.. |+. ..+...|++++|...++++.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 66666666666666666666665543 221 23344455555555555554321 112334444444455555
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007640 311 EVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMR 390 (595)
Q Consensus 311 ~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 390 (595)
++++|.+.++++.... +.+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|...+
T Consensus 154 ~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5555555555544332 2233444444444445555555555554444432 222334444444444444444444444
Q ss_pred HHHH
Q 007640 391 ERML 394 (595)
Q Consensus 391 ~~m~ 394 (595)
++..
T Consensus 231 ~~a~ 234 (258)
T 3uq3_A 231 DAAR 234 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.58 E-value=1.9e-13 Score=141.39 Aligned_cols=348 Identities=11% Similarity=0.008 Sum_probs=240.2
Q ss_pred HHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCH---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007640 196 FFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNA---DEAVYMFKEYFRLYSQPDTWTFNILIQGLS 272 (595)
Q Consensus 196 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 272 (595)
.+...+.+.|++++|.++|++..+.| +...+..|...|...|+. ++|..+|++..+. +...+..|...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 36677788999999999999997765 344566677777778888 8999999998863 5566777777565
Q ss_pred hcC-----CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh
Q 007640 273 RIG-----EVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVA---RGHELLKEVKFKSEFSPDVVTYTSVISGYCK 344 (595)
Q Consensus 273 ~~g-----~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 344 (595)
..+ +.++|+..|++..+.|. ...+..|...|...+..+ ++.+.+......+ +...+..|...|..
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----YPEAGLAQVLLYRT 153 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHHc
Confidence 555 78899999999998663 336777777777655433 3455555554433 45677778888888
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----CC
Q 007640 345 LGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVG---NMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRN----GQ 417 (595)
Q Consensus 345 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~ 417 (595)
.+.++++......+.+.-...+...+..|...|...| +.++|...|++..+.| .++...+..+...|... ++
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCC
T ss_pred CCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCC
Confidence 8866555544333322211233348888888999999 9999999999999987 45666556677777554 79
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC-----CHH
Q 007640 418 LNQGLKLCDEMKGKNLSPNVYTFTILINA-L--CKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAG-----NVD 489 (595)
Q Consensus 418 ~~~A~~l~~~m~~~~~~p~~~~~~~ll~~-~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~ 489 (595)
+++|+..|++.. .| +...+..|... + ...+++++|.++|++..+.| ++..+..|...|. .| +++
T Consensus 233 ~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 999999999998 43 55667777776 4 46899999999999999877 6778888888887 55 999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 007640 490 EANVIVAEMEEKRCKPDKVTFTILIIGHCM----KGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLK----GGMPNEA 561 (595)
Q Consensus 490 ~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A 561 (595)
+|.+.|++.. .| +...+..+...|.. ..++++|..+|++..+.|. ......|...|.. ..++++|
T Consensus 305 ~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 305 AAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHH
Confidence 9999999988 43 67777888877766 4499999999999998773 3455677777764 4589999
Q ss_pred HHHHHHHHhcCC
Q 007640 562 FRIMQRASEDQN 573 (595)
Q Consensus 562 ~~~~~~~~~~~~ 573 (595)
..+++++.+.+.
T Consensus 378 ~~~~~~A~~~g~ 389 (452)
T 3e4b_A 378 YVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHCCC
Confidence 999999998765
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=7.7e-13 Score=126.78 Aligned_cols=232 Identities=12% Similarity=-0.009 Sum_probs=110.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 007640 299 YNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPS--AVTFNVLIDG 376 (595)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~ll~~ 376 (595)
+......+...|++++|.+.++++.... +.+...+..+...+...|++++|+..+++..+.+-.++ ...|..+...
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3444555556666666666666655433 22333555555566666666666666666655221111 1224555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007640 377 FGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDA 456 (595)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 456 (595)
+...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555432 1233455555555555555555555555554442 33344444444222233355555
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHHH
Q 007640 457 RRFLKQLKWNDLVPKPFMYNPVIDGFCKAGN---VDEANVIVAEMEEKR-CKPD------KVTFTILIIGHCMKGRMVEA 526 (595)
Q Consensus 457 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~p~------~~~~~~li~~~~~~g~~~~A 526 (595)
.+.++++.+.... +...+..+...+...|+ +++|...++++.+.. ..|+ ...|..+...|...|++++|
T Consensus 162 ~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 5555555443321 23444444444444444 444544444444321 0111 12344444444444444444
Q ss_pred HHHHHHHHH
Q 007640 527 ISIFNKMLR 535 (595)
Q Consensus 527 ~~~~~~m~~ 535 (595)
...++++++
T Consensus 241 ~~~~~~al~ 249 (272)
T 3u4t_A 241 DAAWKNILA 249 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444444
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=7e-13 Score=127.05 Aligned_cols=242 Identities=7% Similarity=-0.009 Sum_probs=149.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHH
Q 007640 334 TYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLP--DVVTFSSLIDG 411 (595)
Q Consensus 334 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~ 411 (595)
.+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.+..+ ....|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34455566667777777777777776653 2334466666667777777777777777776632111 12346666777
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 007640 412 YCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEA 491 (595)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 491 (595)
+...|++++|...+++..+.. +.+..++..+...|...|++++|...+++..+... .+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777766653 34556677777777777777777777777665532 2455666666333344577777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHHH
Q 007640 492 NVIVAEMEEKRCKPDKVTFTILIIGHCMKGR---MVEAISIFNKMLRIG-CAPD------DITVNSLISCLLKGGMPNEA 561 (595)
Q Consensus 492 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~l~~~~~~~g~~~~A 561 (595)
.+.++++.+.. +.+...+..+...+...|+ +++|...++++++.. -.|+ ..++..+...|...|++++|
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 77777776652 2235566666666666666 666777776666521 1122 24566677777777777777
Q ss_pred HHHHHHHHhcCCCCCCcc
Q 007640 562 FRIMQRASEDQNLQLPSW 579 (595)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~ 579 (595)
.+.++++.+..+.+...+
T Consensus 241 ~~~~~~al~~~p~~~~a~ 258 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAI 258 (272)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHhcCccHHHHH
Confidence 777777776665544433
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=1.9e-12 Score=122.53 Aligned_cols=201 Identities=12% Similarity=0.014 Sum_probs=117.8
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007640 332 VVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDG 411 (595)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 411 (595)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4556666677777777777777777766643 3355566666666666777777777666666543 2245566666666
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHH
Q 007640 412 YCRNGQLNQGLKLCDEMKGKNLSP-NVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDE 490 (595)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 490 (595)
|...|++++|...++++...+..| +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666665522222 344555555556666666666666666555432 234555555555666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007640 491 ANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 491 A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
|...++++.+.. +.+...+..+...+...|++++|.++++++.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666665555432 234445555555555556666666655555553
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=1.3e-11 Score=118.50 Aligned_cols=224 Identities=13% Similarity=-0.011 Sum_probs=151.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHH
Q 007640 295 DIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCK----LGKMDKATGIYNEMNSCGIKPSAVTF 370 (595)
Q Consensus 295 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~ 370 (595)
+..++..+...+...|++++|.+.|++.... .+...+..+...|.. .+++++|.+.|++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 3445555556666666666666666666542 234555566666666 667777777777666654 55566
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 007640 371 NVLIDGFGK----VGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCR----NGQLNQGLKLCDEMKGKNLSPNVYTFTI 442 (595)
Q Consensus 371 ~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~ 442 (595)
..+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 666666666 677777777777776654 55666667777777 777777777777777654 4556666
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007640 443 LINALCK----ENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCK----AGNVDEANVIVAEMEEKRCKPDKVTFTILI 514 (595)
Q Consensus 443 ll~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 514 (595)
+...|.. .+++++|...+++..+.+ ++..+..+...|.. .+++++|...+++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 6666766 777777777777777654 45667777777777 778888888888777763 356667777
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCC
Q 007640 515 IGHCM----KGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 515 ~~~~~----~g~~~~A~~~~~~m~~~g 537 (595)
..|.. .+++++|..+|++..+.|
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777 778888888888777765
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=2.4e-12 Score=121.81 Aligned_cols=201 Identities=10% Similarity=-0.028 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHH
Q 007640 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNA 235 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 235 (595)
...|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4577788888889999999999999888764 5567777778888888888888888887776543 3456677777777
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007640 236 LVKQNNADEAVYMFKEYFRLYSQP-DTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVAR 314 (595)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 314 (595)
+...|++++|.+.|+++.+.+..| +...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777776622223 45566667777777777777777777766532 2345666666677777777777
Q ss_pred HHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007640 315 GHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSC 361 (595)
Q Consensus 315 A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 361 (595)
|.+.++.+.... +.+...+..+...+...|++++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG--GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 777777665433 344555666666666677777777777766654
No 49
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.53 E-value=2.3e-10 Score=122.66 Aligned_cols=419 Identities=10% Similarity=0.015 Sum_probs=295.8
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHhccCCC-CccCHHHH
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGK---CDAAKGLLSQFRPGE-VTMSTFMY 229 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~~~~ 229 (595)
.|...|..++..+.+.+.++.+..+|+.+...- |.....|...+..-.+.+. ++.+..+|++..... .+|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 689999999999999999999999999999864 7788889888998888898 999999999998753 14889999
Q ss_pred HHHHHHHHHcCCH--------hHHHHHHHHHHH-cCC-CC-CHHHHHHHHHHHH---------hcCCHHHHHHHHHHHhh
Q 007640 230 NSLLNALVKQNNA--------DEAVYMFKEYFR-LYS-QP-DTWTFNILIQGLS---------RIGEVKKAFEFFYDMGS 289 (595)
Q Consensus 230 ~~li~~~~~~g~~--------~~A~~~~~~m~~-~~~-~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~ 289 (595)
...+....+.++. +...++|+..+. .|. .+ +...|...+.... ..++++.+..+|+..+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 9988877776654 334477777654 344 44 3567777776543 34457889999999885
Q ss_pred CCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHhcC-CC----C-----------C--C------H
Q 007640 290 FGCSPDIVTYNTLISGLCR-------------VNEVARGHELLKEVKFKS-EF----S-----------P--D------V 332 (595)
Q Consensus 290 ~g~~p~~~t~~~li~~~~~-------------~g~~~~A~~~~~~~~~~~-~~----~-----------p--~------~ 332 (595)
.....-..+|......--. ..+++.|...+.++.... ++ + | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 2111112333222111100 122344555554432110 00 0 1 0 1
Q ss_pred hhHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHH
Q 007640 333 VTYTSVISGYCKLG-------KMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAE-YMRERMLSFGYLPDVVT 404 (595)
Q Consensus 333 ~~~~~ll~~~~~~g-------~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~ 404 (595)
..|...+..--..+ ..+.+..+|++.+.. ++-+...|...+..+...|+.++|. .+|++.... ++.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 34555554333322 123456778888765 3557778888888888889999996 999999874 3456677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCC---------CCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007640 405 FSSLIDGYCRNGQLNQGLKLCDEMKGKN---------LSPN------------VYTFTILINALCKENRLNDARRFLKQL 463 (595)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~~---------~~p~------------~~~~~~ll~~~~~~g~~~~A~~~~~~~ 463 (595)
|-..+....+.|++++|..+|+.+.... ..|+ ..+|...+....+.|..+.|..+|...
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7888888999999999999999987641 0132 346777788778889999999999999
Q ss_pred HhCCCCCCHhhHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--
Q 007640 464 KWNDLVPKPFMYNPVIDGFCKAG-NVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAP-- 540 (595)
Q Consensus 464 ~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-- 540 (595)
.+.-.......|...+..-.+.+ +.+.|.++|+..++. .+-+...|...+.-....|+.+.|..+|++.+.....+
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 87611223445544444444444 599999999999887 44467777888888888999999999999998854222
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007640 541 DDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQL 576 (595)
Q Consensus 541 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 576 (595)
....|...+..-.+.|+.+.+.++.+++.+..+.+.
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 346788888888999999999999999999887654
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=2.5e-13 Score=130.26 Aligned_cols=28 Identities=18% Similarity=-0.008 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 508 VTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
..+..+...+...|++++|...|+++++
T Consensus 216 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 216 ETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444444455555555555555555544
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=3.7e-13 Score=129.09 Aligned_cols=248 Identities=6% Similarity=-0.131 Sum_probs=189.4
Q ss_pred HhcCCHHHHHHHHHHHhhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCh
Q 007640 272 SRIGEVKKAFEFFYDMGSFGCS---PDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKM 348 (595)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 348 (595)
...|++++|+..|+++.+.... .+..++..+...+...|++++|.+.|+++.... +.+...|..+...+...|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCH
Confidence 4567899999999999875321 245678888899999999999999999988764 44678899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007640 349 DKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEM 428 (595)
Q Consensus 349 ~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 428 (595)
++|.+.|+++.+.. +.+...+..+..+|...|++++|...++++.+.. |+.......+..+...|++++|...+++.
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999998864 4467888899999999999999999999998753 44444445555667779999999999887
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 007640 429 KGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVP---KPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKP 505 (595)
Q Consensus 429 ~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 505 (595)
.... +++...+. ++..+...++.++|...++......... +..++..+...|.+.|++++|...|+++.+.. |
T Consensus 171 ~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p 246 (275)
T 1xnf_A 171 FEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--V 246 (275)
T ss_dssp HHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred HhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--c
Confidence 7653 44444443 6667778888899999998887553211 15788889999999999999999999998763 4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 007640 506 DKVTFTILIIGHCMKGRMVEAISIF 530 (595)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~ 530 (595)
+. +.....++...|++++|++.+
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC----
T ss_pred hh--HHHHHHHHHHHHHHHhhHHHH
Confidence 22 233355667778888887765
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=4.9e-12 Score=117.05 Aligned_cols=202 Identities=10% Similarity=-0.011 Sum_probs=110.4
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007640 331 DVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLID 410 (595)
Q Consensus 331 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 410 (595)
+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34556666666666677777777666666543 3345556666666666666666666666665542 224455555566
Q ss_pred HHHHc-CCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCH
Q 007640 411 GYCRN-GQLNQGLKLCDEMKGKNLSP-NVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNV 488 (595)
Q Consensus 411 ~~~~~-g~~~~A~~l~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 488 (595)
.+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+... .+...+..+...+.+.|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCH
Confidence 66666 66666666666655521112 234455555555555555555555555554432 1344555555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 489 DEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 489 ~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
++|.++++++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 55555555555432112444444444455555555555555555543
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=4.4e-13 Score=126.01 Aligned_cols=199 Identities=14% Similarity=0.100 Sum_probs=88.2
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007640 332 VVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDG 411 (595)
Q Consensus 332 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 411 (595)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3445555555566666666666666665532 2344555555555555556666655555555432 2244455555555
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 007640 412 YCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEA 491 (595)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 491 (595)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+.+.|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555554432 33444444455555555555555555555444321 1344444444444455555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 492 NVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 492 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
...++++.+.. +.+..++..+...+...|++++|...++++++
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 55554444432 12344444444444444444444444444444
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=5.2e-12 Score=116.86 Aligned_cols=201 Identities=13% Similarity=-0.015 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007640 297 VTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDG 376 (595)
Q Consensus 297 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~ 376 (595)
..+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 344444555555555555555555554432 2234455555555555555555555555555432 2344555555556
Q ss_pred HHhc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 007640 377 FGKV-GNMVSAEYMRERMLSFGYLPD-VVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLN 454 (595)
Q Consensus 377 ~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 454 (595)
+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 6666 666666666666555211222 4455566666666666666666666665543 334566666666667777777
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007640 455 DARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 455 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
+|...++++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 77777776665443135555666666666777777777777766544
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.53 E-value=2.7e-12 Score=128.87 Aligned_cols=249 Identities=6% Similarity=-0.055 Sum_probs=193.7
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHhccCCCCccCHHHHHHHH
Q 007640 155 SFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGK-CDAAKGLLSQFRPGEVTMSTFMYNSLL 233 (595)
Q Consensus 155 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li 233 (595)
+...|+.+..++.+.|++++|+..|+++++.. +-+..+|..+..++...|+ +++|+..|+++.+.. +.+..+|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 45678888899999999999999999999876 6678899999999999997 999999999998765 45788999999
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cCCH
Q 007640 234 NALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCR-VNEV 312 (595)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~-~g~~ 312 (595)
.++...|++++|+..|+++++..+ .+...|..+..++...|++++|+..|+++++.. +-+...|+.+...+.+ .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999998875 588899999999999999999999999998653 3367788888888888 5654
Q ss_pred HHH-----HHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----
Q 007640 313 ARG-----HELLKEVKFKSEFSPDVVTYTSVISGYCKLG--KMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVG---- 381 (595)
Q Consensus 313 ~~A-----~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g---- 381 (595)
++| ++.+++..... +-+...|+.+...+.+.| ++++|++.+.++ +. .+.+...+..+..+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 666 47777776644 345667888887787777 578888888777 32 2445667777777777763
Q ss_pred -----CHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHH
Q 007640 382 -----NMVSAEYMRERM-LSFGYLPDVVTFSSLIDGY 412 (595)
Q Consensus 382 -----~~~~A~~~~~~m-~~~g~~p~~~~~~~li~~~ 412 (595)
..++|..+++++ .+.. +.....|..+...+
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 247788888887 5542 22334555554444
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=7.1e-13 Score=124.52 Aligned_cols=202 Identities=13% Similarity=0.045 Sum_probs=140.6
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHH
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLL 233 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 233 (595)
.+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 355678888888889999999999999988865 5677888888888888888888888888887653 34677888888
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 007640 234 NALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVA 313 (595)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 313 (595)
..+...|++++|...|+++.+..+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 888888888888888888887654 467778888888888888888888888877542 335667777777888888888
Q ss_pred HHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007640 314 RGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSC 361 (595)
Q Consensus 314 ~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 361 (595)
+|.+.++++.... +.+..++..+...+.+.|++++|.+.|+++.+.
T Consensus 177 ~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 8888888776653 344667777777788888888888888877764
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.52 E-value=3.4e-12 Score=128.23 Aligned_cols=246 Identities=7% Similarity=-0.049 Sum_probs=137.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007640 298 TYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGK-MDKATGIYNEMNSCGIKPSAVTFNVLIDG 376 (595)
Q Consensus 298 t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~~~~~ll~~ 376 (595)
.|..+...+.+.|++++|++.++++.... +.+...|+.+..++...|+ +++|+..|+++.+.. +-+...|..+..+
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 34444455555555555555555555433 2234455555555555554 666666665555543 2344555555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH-cCCHHH
Q 007640 377 FGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCK-ENRLND 455 (595)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~~~ 455 (595)
+...|++++|...++++++.. +-+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 555566666666666555542 2245556666666666666666666666665553 3455566666666665 444355
Q ss_pred H-----HHHHHHHHhCCCCCCHhhHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-------
Q 007640 456 A-----RRFLKQLKWNDLVPKPFMYNPVIDGFCKAG--NVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKG------- 521 (595)
Q Consensus 456 A-----~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g------- 521 (595)
| +..+++....... +...|+.+...+...| ++++|.+.+.++ +. .+.+...+..+...|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccch
Confidence 5 3566666655432 4566666666666666 467777777666 32 2335566667777776653
Q ss_pred --CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHH
Q 007640 522 --RMVEAISIFNKM-LRIGCAPDDITVNSLISCL 552 (595)
Q Consensus 522 --~~~~A~~~~~~m-~~~g~~p~~~~~~~l~~~~ 552 (595)
..++|+++++++ ++.+ +.....|..++..+
T Consensus 331 ~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 247777777776 5432 33334455554444
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=8.4e-13 Score=134.86 Aligned_cols=280 Identities=11% Similarity=0.026 Sum_probs=148.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCCHhh
Q 007640 263 TFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDI----VTYNTLISGLCRVNEVARGHELLKEVKFK----SEFSPDVVT 334 (595)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~p~~~~ 334 (595)
.+..+...+...|++++|...|+++.+.. +.+. ..+..+...|...|++++|.+.+++.... +..+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34445556666777777777777766542 1122 34556666666667777777666665432 000112344
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCC
Q 007640 335 YTSVISGYCKLGKMDKATGIYNEMNSCG-----IKPSAVTFNVLIDGFGKVGN----------MVSAEYMRERMLSFGYL 399 (595)
Q Consensus 335 ~~~ll~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~~~~~ll~~~~~~g~----------~~~A~~~~~~m~~~g~~ 399 (595)
+..+...|...|++++|...|++..+.. .+....++..+...|...|+ .++|...
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~---------- 198 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA---------- 198 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH----------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH----------
Confidence 5555666666666666666666654320 00112233444444444444 0000000
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC--
Q 007640 400 PDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGK----NL-SPNVYTFTILINALCKENRLNDARRFLKQLKWNDLV-PK-- 471 (595)
Q Consensus 400 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p~-- 471 (595)
+++|...+++..+. +. +....++..+...|...|++++|...+++..+.... ++
T Consensus 199 ------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 199 ------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 44444444443221 10 111234555555666666666666666655432110 01
Q ss_pred --HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-C
Q 007640 472 --PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCK-P----DKVTFTILIIGHCMKGRMVEAISIFNKMLRI----GC-A 539 (595)
Q Consensus 472 --~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~ 539 (595)
..++..+...|...|++++|...+++..+.... . ...++..+...+...|++++|..++++.++. +. .
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 340 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence 225666667777777777777777666543100 0 1345666677777777777777777776652 10 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007640 540 PDDITVNSLISCLLKGGMPNEAFRIMQRASED 571 (595)
Q Consensus 540 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (595)
....++..+..+|.+.|++++|.+.++++.+.
T Consensus 341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11345666777777777777777777777654
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=1.8e-12 Score=131.78 Aligned_cols=304 Identities=13% Similarity=0.038 Sum_probs=194.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC-
Q 007640 258 QPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPD----IVTYNTLISGLCRVNEVARGHELLKEVKFKS---EFS- 329 (595)
Q Consensus 258 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~- 329 (595)
......+......+...|++++|...|++..+.. +.+ ...+..+...+...|++++|...+++..... +..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4456667777888888999999999998887652 223 3567778888888899999988888765321 111
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HH
Q 007640 330 PDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGI-KPS----AVTFNVLIDGFGKVGN--------------------MV 384 (595)
Q Consensus 330 p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~--------------------~~ 384 (595)
....++..+...+...|++++|...+++..+... .++ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 1245677778888888888888888888776420 011 3366777777888888 88
Q ss_pred HHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHHcCCHH
Q 007640 385 SAEYMRERMLSF----GYLP-DVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNL-SPN----VYTFTILINALCKENRLN 454 (595)
Q Consensus 385 ~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~ 454 (595)
+|...+++..+. +..+ ...++..+...|...|++++|...+++..+... .++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 887777766432 1111 134566777777788888888887777654310 112 235666777777778888
Q ss_pred HHHHHHHHHHhCCCC-CC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHH
Q 007640 455 DARRFLKQLKWNDLV-PK----PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRC-KPD----KVTFTILIIGHCMKGRMV 524 (595)
Q Consensus 455 ~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~ 524 (595)
+|...+++....... ++ ..++..+...|...|++++|...+++..+... ..+ ..++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 888777776543111 11 44667777777777888888777777664311 111 445666777777777888
Q ss_pred HHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHH
Q 007640 525 EAISIFNKMLRIGCAPD-----DITVNSLISCLLKGGMPNEAF 562 (595)
Q Consensus 525 ~A~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~ 562 (595)
+|...+++..+..-... ..++..+...+...|+...+.
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 367 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTN 367 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence 88877777776432222 123444444555555444433
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=1.5e-12 Score=132.35 Aligned_cols=205 Identities=15% Similarity=0.097 Sum_probs=124.3
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHhccCC----C-Ccc
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPN----SPMIEFFVSSCIRAGKCDAAKGLLSQFRPG----E-VTM 224 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~ 224 (595)
.....+..+...+...|++++|+..|+++.+.+ +.+ ..++..+...+...|++++|...++++... + .+.
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 456677778888889999999999999888864 334 356777888888888888888888876432 1 122
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCC--------------------HHH
Q 007640 225 STFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQ-PD----TWTFNILIQGLSRIGE--------------------VKK 279 (595)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~--------------------~~~ 279 (595)
...++..+...+...|++++|...+++..+.... ++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 3456777888888888888888888877653211 11 3366677777777777 666
Q ss_pred HHHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----HhhHHHHHHHHHhcCChhH
Q 007640 280 AFEFFYDMGSF----GCSP-DIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPD----VVTYTSVISGYCKLGKMDK 350 (595)
Q Consensus 280 A~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~ 350 (595)
|...+.+..+. +..+ ...++..+...+...|++++|.+.+++......-.++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 66666654321 1001 1224445555555555665555555554322100111 1244444555555555555
Q ss_pred HHHHHHHHH
Q 007640 351 ATGIYNEMN 359 (595)
Q Consensus 351 A~~l~~~m~ 359 (595)
|...+++..
T Consensus 246 A~~~~~~al 254 (406)
T 3sf4_A 246 ASEYYKKTL 254 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.45 E-value=1.6e-12 Score=132.76 Aligned_cols=203 Identities=14% Similarity=0.060 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHhccCC----C-CccCH
Q 007640 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNS----PMIEFFVSSCIRAGKCDAAKGLLSQFRPG----E-VTMST 226 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~ 226 (595)
...+..+...+...|++++|+..|+++.+.+ +.+. .++..+...|...|++++|...++++.+. + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 3455567788899999999999999998864 3343 46788888899999999999998887542 1 13345
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHH
Q 007640 227 FMYNSLLNALVKQNNADEAVYMFKEYFRLY-----SQPDTWTFNILIQGLSRIGE-----------------VKKAFEFF 284 (595)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~ 284 (595)
.++..+...|...|++++|...|++..+.. ......++..+...|...|+ +++|...+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 677888888889999999998888876541 11234467777778888888 77777766
Q ss_pred HHHhhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----HhhHHHHHHHHHhcCChhHHHHHH
Q 007640 285 YDMGSF----GCS-PDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPD----VVTYTSVISGYCKLGKMDKATGIY 355 (595)
Q Consensus 285 ~~m~~~----g~~-p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~A~~l~ 355 (595)
++..+. +-. ....++..+...+...|++++|.+.+++......-.++ ...+..+...|...|++++|...|
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 655321 100 11234455555555666666666665554432100001 124444555555555555555555
Q ss_pred HHHH
Q 007640 356 NEMN 359 (595)
Q Consensus 356 ~~m~ 359 (595)
++..
T Consensus 287 ~~al 290 (411)
T 4a1s_A 287 KRTL 290 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.45 E-value=1.9e-11 Score=109.51 Aligned_cols=169 Identities=15% Similarity=0.076 Sum_probs=134.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 007640 401 DVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVID 480 (595)
Q Consensus 401 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 480 (595)
+...|..+...|...|++++|+..|++..+.. |-+..++..+...|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 56678888888888888888888888877764 556778888888888888888888888887766533 5667777788
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007640 481 GFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNE 560 (595)
Q Consensus 481 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 560 (595)
.+...++++.|...+.+..+.. +.+...+..+...+...|++++|++.|++.++.. +.+..++..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 8888888888888888887763 3367778888888888888888888888888764 5667788888888888888888
Q ss_pred HHHHHHHHHhcCC
Q 007640 561 AFRIMQRASEDQN 573 (595)
Q Consensus 561 A~~~~~~~~~~~~ 573 (595)
|++.++++++..+
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 8888888887654
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.45 E-value=4.1e-12 Score=125.21 Aligned_cols=277 Identities=15% Similarity=0.082 Sum_probs=156.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCCHhhH
Q 007640 264 FNILIQGLSRIGEVKKAFEFFYDMGSFGCSPD----IVTYNTLISGLCRVNEVARGHELLKEVKFK----SEFSPDVVTY 335 (595)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~p~~~~~ 335 (595)
+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|.+.+++.... +..+....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3444555666666666666666665432 112 234555555666666666666666554321 0001112344
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007640 336 TSVISGYCKLGKMDKATGIYNEMNSCGI-KPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCR 414 (595)
Q Consensus 336 ~~ll~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 414 (595)
..+...+...|++++|...+++..+... .++.. ....++..+...+..
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYHA 135 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHHH
Confidence 4555555555555555555555433100 00100 002244444445555
Q ss_pred cCC--------------------HHHHHHHHHHHhhC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-
Q 007640 415 NGQ--------------------LNQGLKLCDEMKGK----N-LSPNVYTFTILINALCKENRLNDARRFLKQLKWNDL- 468 (595)
Q Consensus 415 ~g~--------------------~~~A~~l~~~m~~~----~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~- 468 (595)
.|+ +++|...+++.... + .+....++..+...+...|++++|...+++..+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 555 55555555443221 1 011133556666667777777777777776643210
Q ss_pred ----CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 007640 469 ----VPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCK-PD----KVTFTILIIGHCMKGRMVEAISIFNKMLRI--- 536 (595)
Q Consensus 469 ----~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 536 (595)
.....++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...++++++.
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 111336777788888888888888888877643110 11 456777888888899999999988887762
Q ss_pred -CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007640 537 -GC-APDDITVNSLISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 537 -g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
+. .....++..+..+|.+.|++++|.+.++++.+..
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 11 1113467788889999999999999999888754
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.43 E-value=2e-10 Score=112.36 Aligned_cols=223 Identities=9% Similarity=0.006 Sum_probs=150.4
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007640 349 DKATGIYNEMNSCGIKPSAVTFNVLIDGFG-------KVGNM-------VSAEYMRERMLSFGYLPDVVTFSSLIDGYCR 414 (595)
Q Consensus 349 ~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~-------~~g~~-------~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 414 (595)
++|..+|++..... +.+...|..++..+. +.|++ ++|..+|++.++.-.+-+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 46666666666542 345555655555544 34664 7777777777763112345577777777777
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-HcCCHHHHH
Q 007640 415 NGQLNQGLKLCDEMKGKNLSPNVY-TFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFC-KAGNVDEAN 492 (595)
Q Consensus 415 ~g~~~~A~~l~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~ 492 (595)
.|++++|..+|++..+.. +-+.. +|..++..+.+.|++++|..+|++..+... .+...|...+.... ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888877642 22233 677777777778888888888888776543 24444544333322 258888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 493 VIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIG-CAP--DDITVNSLISCLLKGGMPNEAFRIMQRAS 569 (595)
Q Consensus 493 ~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 569 (595)
.+|++..+.. +-+...|..++..+.+.|++++|..+|+++++.. ++| ....|..++..+.+.|+.++|..+++++.
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888877652 2356777778888888888888888888888752 344 35677777888888888888888888888
Q ss_pred hcCCCC
Q 007640 570 EDQNLQ 575 (595)
Q Consensus 570 ~~~~~~ 575 (595)
+..+.+
T Consensus 269 ~~~p~~ 274 (308)
T 2ond_A 269 TAFREE 274 (308)
T ss_dssp HHTTTT
T ss_pred HHcccc
Confidence 777644
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.43 E-value=5.5e-12 Score=124.27 Aligned_cols=275 Identities=15% Similarity=0.070 Sum_probs=136.1
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-CCHHHH
Q 007640 229 YNSLLNALVKQNNADEAVYMFKEYFRLYSQPD----TWTFNILIQGLSRIGEVKKAFEFFYDMGSF----GCS-PDIVTY 299 (595)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~t~ 299 (595)
+......+...|++++|...|++..+..+. + ...+..+...+...|++++|...+++..+. +-. ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 334455555666666666666666655321 2 245556666666666666666666654321 111 113455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----HhhHHHHHHHHHhcCC--------------------hhHHHHHH
Q 007640 300 NTLISGLCRVNEVARGHELLKEVKFKSEFSPD----VVTYTSVISGYCKLGK--------------------MDKATGIY 355 (595)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~--------------------~~~A~~l~ 355 (595)
..+...+...|++++|.+.+++......-.++ ..++..+...+...|+ +++|.+.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 56666666777777777776665432100111 2356666666777777 66666666
Q ss_pred HHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007640 356 NEMNSC----GI-KPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGY-LPDVVTFSSLIDGYCRNGQLNQGLKLCDEMK 429 (595)
Q Consensus 356 ~~m~~~----g~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 429 (595)
++..+. +. ......+..+...+...|++++|...+++..+... .++.
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--------------------------- 219 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK--------------------------- 219 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH---------------------------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh---------------------------
Confidence 554321 00 00122344444444555555555555444432100 0000
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C----CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC---
Q 007640 430 GKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLV-P----KPFMYNPVIDGFCKAGNVDEANVIVAEMEEK--- 501 (595)
Q Consensus 430 ~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--- 501 (595)
.....++..+...+...|++++|...+++....... . ...++..+...+...|++++|...+++..+.
T Consensus 220 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 220 ----AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp ----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 001123444444444455555555544443321100 0 1334555566666666666666666655432
Q ss_pred -CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 502 -RCK-PDKVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 502 -g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
+.. ....++..+...+...|++++|...++++.+
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 100 0133555666666667777777777776665
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=1.8e-11 Score=123.94 Aligned_cols=232 Identities=9% Similarity=-0.059 Sum_probs=165.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--CCCHHHHH
Q 007640 338 VISGYCKLGKMDKATGIYNEMNSC----GIKP-SAVTFNVLIDGFGKVGNMVSAEYMRERMLSF----GY--LPDVVTFS 406 (595)
Q Consensus 338 ll~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~--~p~~~~~~ 406 (595)
....+...|++++|...|++..+. +-.+ ...++..+...|...|++++|...+++..+. +. .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455566778888888888887653 1111 2356677777788888888888877776542 10 11235677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHhhHH
Q 007640 407 SLIDGYCRNGQLNQGLKLCDEMKGKNL-SPN----VYTFTILINALCKENRLNDARRFLKQLKW-----NDLVPKPFMYN 476 (595)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 476 (595)
.+...|...|++++|...+++..+... .++ ..++..+...|...|++++|...+++..+ ...+....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 788888889999999988887754310 011 24677888889999999999999988876 23133467788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 007640 477 PVIDGFCKAGNVDEANVIVAEMEEK----RCKPDKVTFTILIIGHCMKGR---MVEAISIFNKMLRIGCAP-DDITVNSL 548 (595)
Q Consensus 477 ~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p-~~~~~~~l 548 (595)
.+...|.+.|++++|...+++..+. +-+.....+..+...+...|+ +++|+.++++. +..| ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 9999999999999999999987753 111122335667778888888 77788777765 2223 34567789
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC
Q 007640 549 ISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 549 ~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
...|.+.|++++|.+.++++.+..
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988643
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=2.5e-10 Score=111.65 Aligned_cols=218 Identities=9% Similarity=0.047 Sum_probs=122.5
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCh-------HHHHHHHHhccCCCCccCHHHHHHHHHHHHH
Q 007640 173 DSVQVVFDYMRSDGHLPNSPMIEFFVSSCIR-------AGKC-------DAAKGLLSQFRPGEVTMSTFMYNSLLNALVK 238 (595)
Q Consensus 173 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 238 (595)
++|..+|+++.+.. +.++..|..++..+.. .|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777787777754 5677777777766653 4664 6677777776652113455566667777777
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 007640 239 QNNADEAVYMFKEYFRLYSQPDTW-TFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLC-RVNEVARGH 316 (595)
Q Consensus 239 ~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~-~~g~~~~A~ 316 (595)
.|++++|..+|++.++..+. +.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777776664321 222 56666666666666666666666666432 222333332222211 145666666
Q ss_pred HHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007640 317 ELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCG-IKP--SAVTFNVLIDGFGKVGNMVSAEYMRERM 393 (595)
Q Consensus 317 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g-~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~m 393 (595)
++|+...... +.+...|..++..+.+.|++++|..+|++..+.. ++| ....|..++....+.|+.+.|..+++++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666555432 2234555555555555566666666666655532 233 2334555555555555555555555555
Q ss_pred Hh
Q 007640 394 LS 395 (595)
Q Consensus 394 ~~ 395 (595)
.+
T Consensus 268 ~~ 269 (308)
T 2ond_A 268 FT 269 (308)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.39 E-value=1.8e-11 Score=127.46 Aligned_cols=194 Identities=12% Similarity=0.003 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 007640 366 SAVTFNVLIDGFGKVGNM-VSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILI 444 (595)
Q Consensus 366 ~~~~~~~ll~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll 444 (595)
+...+..+...+...|++ ++|...|++..+.. +.+...|..+..+|...|++++|...|++..+.. |+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHH
Confidence 344444445555555555 55555555544432 1234455555555555555555555555555442 3445555555
Q ss_pred HHHHHc---------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCC--C
Q 007640 445 NALCKE---------NRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKA--------GNVDEANVIVAEMEEKRCK--P 505 (595)
Q Consensus 445 ~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~--p 505 (595)
..|... |++++|...+++..+.... +...|..+..+|... |++++|.+.|++..+.... -
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 555555 5555555555555554422 455555555555555 5566666666665554210 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007640 506 DKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRI 564 (595)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 564 (595)
+...|..+..+|...|++++|...|+++++.. +.+...+..+..++...|++++|++.
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666666666665543 33445555566666666666666543
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.37 E-value=5.8e-11 Score=120.11 Aligned_cols=162 Identities=7% Similarity=-0.055 Sum_probs=76.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----CHhhHH
Q 007640 267 LIQGLSRIGEVKKAFEFFYDMGSFGC-SP----DIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSP-----DVVTYT 336 (595)
Q Consensus 267 li~~~~~~g~~~~A~~~~~~m~~~g~-~p----~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-----~~~~~~ 336 (595)
....+...|++++|...|++..+.-- .+ ...++..+...|...|++++|.+.+++......-.+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44455666777777777766653200 11 124555666666666666666666665543210011 123455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHH
Q 007640 337 SVISGYCKLGKMDKATGIYNEMNSCGIK-PS----AVTFNVLIDGFGKVGNMVSAEYMRERMLSF----GY-LPDVVTFS 406 (595)
Q Consensus 337 ~ll~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~ 406 (595)
.+...|...|++++|.+.|++..+..-. ++ ..++..+..+|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 5556666666666666666655431000 01 123444444445555555555444444331 11 11223344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 007640 407 SLIDGYCRNGQLNQGLKLCDEM 428 (595)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m 428 (595)
.+...|...|++++|...+++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4444444444444444444443
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.37 E-value=3.1e-12 Score=124.92 Aligned_cols=202 Identities=11% Similarity=0.048 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC------C-CC
Q 007640 369 TFNVLIDGFGKVGNMVSAEYMRERMLSF------GY-LPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGK------N-LS 434 (595)
Q Consensus 369 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~------g~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------~-~~ 434 (595)
.+..+...|...|++++|...+++..+. +. +.....+..+...|...|++++|...+++..+. + .+
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3344444444444444444444444331 11 112334455555555555555555555554432 1 11
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC------
Q 007640 435 PNVYTFTILINALCKENRLNDARRFLKQLKWN------DLVP-KPFMYNPVIDGFCKAGNVDEANVIVAEMEEK------ 501 (595)
Q Consensus 435 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------ 501 (595)
....++..+...+...|++++|.++++++.+. +..| ...++..+...|...|++++|.+.++++.+.
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 22344555566666666666666666665443 1111 2345666667777777777777777766642
Q ss_pred -CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007640 502 -RCKPDK-------VTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASED 571 (595)
Q Consensus 502 -g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (595)
...+.. ..+..+...+...+.+.+|...++...... +....++..++.+|.+.|++++|.++++++++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 011111 112222233334555555666666655432 344567788888888999999999998888764
No 71
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.37 E-value=5.7e-09 Score=111.83 Aligned_cols=396 Identities=8% Similarity=0.015 Sum_probs=273.5
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCC---HhHHHHH
Q 007640 172 HDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNN---ADEAVYM 248 (595)
Q Consensus 172 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~ 248 (595)
..+.+..|++.+..+ +-|..+|..++..+.+.+.++.+..+|+.+... .+.....|...+..-.+.|+ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 445555666666655 779999999999999999999999999999875 57788899999999888888 9999999
Q ss_pred HHHHHHcCC-CCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHh-hCCC-CCC-HHHHHHHHHHHH---------
Q 007640 249 FKEYFRLYS-QPDTWTFNILIQGLSRIGEV--------KKAFEFFYDMG-SFGC-SPD-IVTYNTLISGLC--------- 307 (595)
Q Consensus 249 ~~~m~~~~~-~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~-~~g~-~p~-~~t~~~li~~~~--------- 307 (595)
|++.+...+ .|++..|...+....+.++. +.+.++|+... ..|. .++ ...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 999988652 37888888888766665543 33457777665 3465 554 467777766543
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCHhhHHH---HHHHH----------HhcCChhHHHHHHHHHHH--CCCC--------
Q 007640 308 RVNEVARGHELLKEVKFKSEFSPDVVTYTS---VISGY----------CKLGKMDKATGIYNEMNS--CGIK-------- 364 (595)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~---ll~~~----------~~~g~~~~A~~l~~~m~~--~g~~-------- 364 (595)
..++++.+.++|+.+.... ...-..+|.. +...+ -....++.|...+.++.. .++.
T Consensus 206 eq~~~~~~R~iy~raL~iP-~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQP-MDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSC-CSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HHhHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 2345788899999987421 1111233322 22111 001233445555555432 1211
Q ss_pred -------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007640 365 -------P-----S---AVTFNVLIDGFGKVG-------NMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGL 422 (595)
Q Consensus 365 -------p-----~---~~~~~~ll~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 422 (595)
| + ...|...+.---..+ ..+.+..+|++.+.. ++-+...|-..+..+...|+.++|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~ 363 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVI 363 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 1 0 123444443222221 123355678887765 3457788888888888999999997
Q ss_pred -HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---------CC------------CHhhHHHHHH
Q 007640 423 -KLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDL---------VP------------KPFMYNPVID 480 (595)
Q Consensus 423 -~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---------~p------------~~~~~~~li~ 480 (595)
.+|++.... +|.+...+...+....+.|++++|.++|+.+..... .| ...+|...+.
T Consensus 364 r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~ 442 (679)
T 4e6h_A 364 TKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN 442 (679)
T ss_dssp HHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence 999999874 466777788888888999999999999999875310 13 1346888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007640 481 GFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMK-GRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPN 559 (595)
Q Consensus 481 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 559 (595)
...+.|+.+.|..+|.++.+.-.......|...+..-.+. ++.+.|.++|+..++. ++-+...+...++.....|+.+
T Consensus 443 ~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 443 TMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHH
Confidence 8888999999999999998761112233443333333344 4599999999999986 4567777888899888999999
Q ss_pred HHHHHHHHHHhcCC
Q 007640 560 EAFRIMQRASEDQN 573 (595)
Q Consensus 560 ~A~~~~~~~~~~~~ 573 (595)
.|+.+|+++++..+
T Consensus 522 ~AR~lferal~~~~ 535 (679)
T 4e6h_A 522 QVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998765
No 72
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.35 E-value=1.2e-10 Score=104.38 Aligned_cols=166 Identities=15% Similarity=0.040 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHH
Q 007640 155 SFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLN 234 (595)
Q Consensus 155 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 234 (595)
++.+|..+...+.+.|++++|++.|++..+.. |-+..++..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 55667777777777777777777777776654 4566666666667777777777777666665443 334555666666
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007640 235 ALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVAR 314 (595)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 314 (595)
.+...++++.|...+.+..+..+ .+...+..+...|.+.|++++|++.|++..+.. +.+..++..+...|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 66666666666666666665543 355566666666666666666666666665432 2345556666666666666666
Q ss_pred HHHHHHHHHh
Q 007640 315 GHELLKEVKF 324 (595)
Q Consensus 315 A~~~~~~~~~ 324 (595)
|.+.|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666554
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.34 E-value=4.5e-11 Score=124.38 Aligned_cols=214 Identities=11% Similarity=-0.053 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007640 312 VARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKM-DKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMR 390 (595)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 390 (595)
++++.+.+++..... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|...|
T Consensus 84 ~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455556666554332 34566677777777777777 77777777776653 334667777777777777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc--------CCH
Q 007640 391 ERMLSFGYLPDVVTFSSLIDGYCRN---------GQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKE--------NRL 453 (595)
Q Consensus 391 ~~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~--------g~~ 453 (595)
++..+.. |+...+..+...|... |++++|+..+++..+.. +.+...|..+..+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 7777653 5667777777777777 88888888888877664 55677788888888877 888
Q ss_pred HHHHHHHHHHHhCCCC--CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007640 454 NDARRFLKQLKWNDLV--PKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFN 531 (595)
Q Consensus 454 ~~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 531 (595)
++|...+++..+.... .+...|..+...|...|++++|.+.|++..+.. +.+...+..+...+...|++++|+..+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888876531 367888888888888999999999998888763 2356677888888888888888887554
Q ss_pred H
Q 007640 532 K 532 (595)
Q Consensus 532 ~ 532 (595)
+
T Consensus 317 ~ 317 (474)
T 4abn_A 317 K 317 (474)
T ss_dssp T
T ss_pred c
Confidence 3
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=8.7e-12 Score=121.68 Aligned_cols=171 Identities=17% Similarity=0.081 Sum_probs=91.7
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------C
Q 007640 225 STFMYNSLLNALVKQNNADEAVYMFKEYFRL-------YSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSF------G 291 (595)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 291 (595)
...++..+...+...|++++|..+|+++.+. .......++..+...|...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3445566666666666666666666666552 11223445556666666666666666666655432 1
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC---
Q 007640 292 C-SPDIVTYNTLISGLCRVNEVARGHELLKEVKFK------SEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSC--- 361 (595)
Q Consensus 292 ~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~--- 361 (595)
- +....++..+...|...|++++|.+.+++.... ...+.....+..+...+...|++++|.++|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 112344555555666666666666666555432 101122344555666666666666666666666542
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007640 362 ---GIKP-SAVTFNVLIDGFGKVGNMVSAEYMRERMLS 395 (595)
Q Consensus 362 ---g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 395 (595)
+..| ...++..+...|...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 223455555566666666666666655543
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=2.1e-10 Score=102.14 Aligned_cols=168 Identities=15% Similarity=0.078 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 007640 403 VTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGF 482 (595)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 482 (595)
..+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+... .+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 456667778888888888888888887653 45677888888888889999999999888877653 3677888888899
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007640 483 CKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAF 562 (595)
Q Consensus 483 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 562 (595)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|..+++++.+.. +.+...+..++.++...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999988763 3467888888899999999999999999988864 556788889999999999999999
Q ss_pred HHHHHHHhcCCC
Q 007640 563 RIMQRASEDQNL 574 (595)
Q Consensus 563 ~~~~~~~~~~~~ 574 (595)
+.++++.+..+.
T Consensus 165 ~~~~~~~~~~~~ 176 (186)
T 3as5_A 165 PHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHcCCC
Confidence 999998876543
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.30 E-value=3.9e-10 Score=113.78 Aligned_cols=229 Identities=12% Similarity=0.008 Sum_probs=155.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CC-CHHHHH
Q 007640 338 VISGYCKLGKMDKATGIYNEMNSCGI-KPS----AVTFNVLIDGFGKVGNMVSAEYMRERMLSF----GY-LP-DVVTFS 406 (595)
Q Consensus 338 ll~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~-~p-~~~~~~ 406 (595)
....+...|++++|+..|++..+.-. .++ ..++..+...|...|+++.|...+++..+. +. .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445667777777777777765310 112 345666777777777777777777766542 10 11 234667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHhhHH
Q 007640 407 SLIDGYCRNGQLNQGLKLCDEMKGK----NLS-PNVYTFTILINALCKENRLNDARRFLKQLKW-----NDLVPKPFMYN 476 (595)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~----~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 476 (595)
.+...|...|++++|...+++..+. +.+ ....++..+...|...|++++|...+++... .... ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 7778888888888888888776542 111 1134677788888888999999888888776 4433 367788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 007640 477 PVIDGFCKAGNVDEANVIVAEMEEKR----CKPDKVTFTILIIGHCMKGR---MVEAISIFNKMLRIGCAP-DDITVNSL 548 (595)
Q Consensus 477 ~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p-~~~~~~~l 548 (595)
.+...+.+.|++++|...+++..+.. -+.....+..+...+...|+ +.+|+.++++. +..+ ....+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 88889999999999999998887642 11123445566666667777 77777777762 2222 23456788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 007640 549 ISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 549 ~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
+..|.+.|++++|.+.++++.+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999988875
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.29 E-value=2.2e-09 Score=107.87 Aligned_cols=200 Identities=11% Similarity=0.066 Sum_probs=97.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCHHH
Q 007640 336 TSVISGYCKLGKMDKATGIYNEMNSC----GIK--P-SAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGY----LPDVVT 404 (595)
Q Consensus 336 ~~ll~~~~~~g~~~~A~~l~~~m~~~----g~~--p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~ 404 (595)
..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+... ......
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 33444444555555555555444321 111 1 122333444455555555555555555443211 011234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCC--CCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HhhH
Q 007640 405 FSSLIDGYCRNGQLNQGLKLCDEMKGKNLS--PNVYTFT----ILINALCKENRLNDARRFLKQLKWNDLVPK---PFMY 475 (595)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--p~~~~~~----~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~ 475 (595)
+..+...+...|++++|...+++....... ....... ..+..+...|++++|...+++.......+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 555555566666666666666655432101 0111111 122335566666666666666554332111 1234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 476 NPVIDGFCKAGNVDEANVIVAEMEEK----RCKPDK-VTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 476 ~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55666666777777777776665432 211122 2445556666677777777777776654
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.28 E-value=1.3e-09 Score=109.94 Aligned_cols=230 Identities=10% Similarity=0.007 Sum_probs=157.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHHCC--C---CC-CHHHHH
Q 007640 302 LISGLCRVNEVARGHELLKEVKFKSEFSPD----VVTYTSVISGYCKLGKMDKATGIYNEMNSCG--I---KP-SAVTFN 371 (595)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g--~---~p-~~~~~~ 371 (595)
....+...|++++|...+++........++ ..++..+...|...|+++.|...+++..+.. . .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 344456778888888888776643211122 3466777778888888888888887775421 0 11 234667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-----CCCCCCHHHHH
Q 007640 372 VLIDGFGKVGNMVSAEYMRERMLSF----GYLP-DVVTFSSLIDGYCRNGQLNQGLKLCDEMKG-----KNLSPNVYTFT 441 (595)
Q Consensus 372 ~ll~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~p~~~~~~ 441 (595)
.+...|...|++++|...+++..+. +..+ ...++..+...|...|++++|...+++... .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 7788888888888888888776652 1111 234677788888889999999998888776 33 33467788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCC---C-CHhhHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 007640 442 ILINALCKENRLNDARRFLKQLKWNDLV---P-KPFMYNPVIDGFCKAGN---VDEANVIVAEMEEKRCKPD-KVTFTIL 513 (595)
Q Consensus 442 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~---p-~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-~~~~~~l 513 (595)
.+...+.+.|++++|...+++..+.... + ....+..+...+...++ +++|..++++. +..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 8888899999999999999887664211 1 23345566666667777 77777777662 22222 3456678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 007640 514 IIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~ 535 (595)
...|...|++++|...|+++.+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888999999999999988865
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.28 E-value=2.6e-09 Score=107.36 Aligned_cols=235 Identities=12% Similarity=0.005 Sum_probs=121.2
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHhccCC----CCc-cCHHHH
Q 007640 159 YNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSP----MIEFFVSSCIRAGKCDAAKGLLSQFRPG----EVT-MSTFMY 229 (595)
Q Consensus 159 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~ 229 (595)
+..+...+...|++++|...+++........+.. ++..+...+...|++++|...+++.... +.. ....++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556667888888888888877654222222 4555566677777777777777766432 110 012234
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcC----CC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--C--CHHH
Q 007640 230 NSLLNALVKQNNADEAVYMFKEYFRLY----SQ--P-DTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCS--P--DIVT 298 (595)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~~----~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t 298 (595)
..+...+...|++++|...+++..+.. .. | ....+..+...+...|++++|...+++.....-. + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 556666777777777777777665431 11 1 2234455666666777777777777665532111 1 1234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHH-----HHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHH
Q 007640 299 YNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYT-----SVISGYCKLGKMDKATGIYNEMNSCGIKPS---AVTF 370 (595)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-----~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~~~ 370 (595)
+..+...+...|++++|...+++.........+...+. ..+..+...|++++|...+++.......+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 45555556666666666666665543210001101111 122234455666666666555543221110 1123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 007640 371 NVLIDGFGKVGNMVSAEYMRERM 393 (595)
Q Consensus 371 ~~ll~~~~~~g~~~~A~~~~~~m 393 (595)
..+...+...|++++|...++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444455555555444443
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.24 E-value=3.5e-10 Score=122.64 Aligned_cols=166 Identities=13% Similarity=0.057 Sum_probs=119.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 007640 401 DVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVID 480 (595)
Q Consensus 401 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 480 (595)
+..+|+.|...|.+.|++++|+..|++.++.. +-+..++..+..+|.+.|++++|++.|++..+.+.. +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34567777777777777777777777776653 445667777777777777777777777777765532 5667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007640 481 GFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNE 560 (595)
Q Consensus 481 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 560 (595)
+|.+.|++++|++.|++.++.. +-+...|..+..+|...|++++|+..|++.++.. +-+...+..++.+|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 7777777888877777777653 2256677777777778888888888888777754 4456777777778888888887
Q ss_pred HHHHHHHHHh
Q 007640 561 AFRIMQRASE 570 (595)
Q Consensus 561 A~~~~~~~~~ 570 (595)
|.+.++++++
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777664
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.24 E-value=2e-09 Score=95.71 Aligned_cols=164 Identities=13% Similarity=0.059 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007640 192 PMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGL 271 (595)
Q Consensus 192 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 271 (595)
..+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+..+ .+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 345556666666777777777777766543 34566666677777777777777777777666543 3556666666677
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHH
Q 007640 272 SRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKA 351 (595)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A 351 (595)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHH
Confidence 77777777777776665432 3345566666666666666666666666665543 23455666666666666666666
Q ss_pred HHHHHHHHH
Q 007640 352 TGIYNEMNS 360 (595)
Q Consensus 352 ~~l~~~m~~ 360 (595)
.+.+++..+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666654
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.20 E-value=1.4e-09 Score=100.92 Aligned_cols=200 Identities=11% Similarity=-0.060 Sum_probs=153.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 007640 365 PSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILI 444 (595)
Q Consensus 365 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll 444 (595)
.|...+......+...|++++|...|++..+....++...+..+..++...|++++|+..+++..+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45677888888899999999999999998886543677777778889999999999999999988764 44677888889
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 007640 445 NALCKENRLNDARRFLKQLKWNDLVPKP-------FMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPD---KVTFTILI 514 (595)
Q Consensus 445 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~~~~~li 514 (595)
..|...|++++|...+++..+..+. +. ..|..+...+...|++++|.+.|+++.+. .|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 9999999999999999998876533 44 45788888888999999999999999876 454 45667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007640 515 IGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQL 576 (595)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 576 (595)
..+... +..+++++...+ ..+...+..+. ....+.+++|+..++++.+..+...
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~ 214 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRT 214 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCH
Confidence 777544 344556666554 34455554443 3345678999999999999876553
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.17 E-value=5.7e-09 Score=96.82 Aligned_cols=207 Identities=8% Similarity=-0.059 Sum_probs=161.0
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007640 330 PDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLI 409 (595)
Q Consensus 330 p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 409 (595)
.|...+......+...|++++|+..|++..+...+++...+..+..++...|++++|...+++..+.. +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46688889999999999999999999999987633778888889999999999999999999999864 23567888999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHhhHHHHHH
Q 007640 410 DGYCRNGQLNQGLKLCDEMKGKNLSPNV-------YTFTILINALCKENRLNDARRFLKQLKWNDLVP--KPFMYNPVID 480 (595)
Q Consensus 410 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~-------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~ 480 (595)
..|...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.++++.+.+. . +...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS-KKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC-HHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC-CcccHHHHHHHHH
Confidence 99999999999999999998864 4455 5588888889999999999999999987642 2 3567777888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007640 481 GFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSL 548 (595)
Q Consensus 481 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 548 (595)
.|...| ..+++++...+ ..+...|.... ....+.+++|+..+++.++.. +-+..+...+
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l 220 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQ 220 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 876544 44556666553 23455554443 334577999999999999864 3344444433
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.16 E-value=7.6e-10 Score=120.03 Aligned_cols=167 Identities=12% Similarity=-0.006 Sum_probs=149.1
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHH
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLL 233 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 233 (595)
.+..+|+.|..+|.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|+..|++..+.+ +.+..+|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 467899999999999999999999999999876 6678999999999999999999999999998765 45788999999
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 007640 234 NALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVA 313 (595)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 313 (595)
.+|.+.|++++|++.|++.++..+ -+..+|+.+...|.+.|++++|++.|++..+.. +-+...+..+...+...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999998765 478899999999999999999999999998653 335788999999999999999
Q ss_pred HHHHHHHHHHh
Q 007640 314 RGHELLKEVKF 324 (595)
Q Consensus 314 ~A~~~~~~~~~ 324 (595)
+|.+.++++..
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988877653
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.14 E-value=3.5e-10 Score=108.37 Aligned_cols=228 Identities=14% Similarity=0.088 Sum_probs=157.5
Q ss_pred HhcCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHH
Q 007640 343 CKLGKMDKATGIYNEMNS-------CGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSF------GY-LPDVVTFSSL 408 (595)
Q Consensus 343 ~~~g~~~~A~~l~~~m~~-------~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------g~-~p~~~~~~~l 408 (595)
...|++++|+.+|++..+ .+.+....++..+...|...|++++|...++++.+. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 355777777777777654 122234567888999999999999999999998764 22 2235678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCC-CHhh
Q 007640 409 IDGYCRNGQLNQGLKLCDEMKGK------N-LSPNVYTFTILINALCKENRLNDARRFLKQLKWN------DLVP-KPFM 474 (595)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~------~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~ 474 (595)
...|...|++++|...+.+.... . .+....++..+...|...|++++|...++++.+. ...| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988754 1 1334567888889999999999999999998764 1122 3567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCC
Q 007640 475 YNPVIDGFCKAGNVDEANVIVAEMEEK-------RCKPD-KVTFTILIIGHCMKGR------MVEAISIFNKMLRIGCAP 540 (595)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~-~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~g~~p 540 (595)
+..+...|...|++++|..+++++.+. ...+. ...|..+...+...+. +.++...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999998763 11222 2233333333333222 2333333322211 1122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007640 541 DDITVNSLISCLLKGGMPNEAFRIMQRASED 571 (595)
Q Consensus 541 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (595)
...++..++.+|...|++++|.++++++++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457888999999999999999999998864
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.11 E-value=8.2e-10 Score=105.74 Aligned_cols=135 Identities=18% Similarity=0.089 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------C-
Q 007640 226 TFMYNSLLNALVKQNNADEAVYMFKEYFRL------YS-QPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSF------G- 291 (595)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g- 291 (595)
..++..+...+...|++++|+..|++..+. +. +....++..+...|...|++++|...|++..+. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 344455555555555555555555554432 11 112334555555555555555555555554422 0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007640 292 CSPDIVTYNTLISGLCRVNEVARGHELLKEVKFK------SEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNS 360 (595)
Q Consensus 292 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 360 (595)
.+....++..+...+...|++++|.+.+++.... ...+....++..+...+...|++++|...|++..+
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0112334455555555555555555555554432 10111234555666666666666666666666554
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.06 E-value=5.9e-09 Score=100.95 Aligned_cols=159 Identities=11% Similarity=-0.007 Sum_probs=68.5
Q ss_pred HHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHH
Q 007640 341 GYCKLGKMDKATGIYNEMNSC----GIKPS-AVTFNVLIDGFGKVGNMVSAEYMRERMLSF----GYLP-DVVTFSSLID 410 (595)
Q Consensus 341 ~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~ 410 (595)
.|...|++++|.+.|++..+. |-+++ ..+|+.+..+|.+.|++++|...+++..+. |-.. -..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666666666555431 11111 234555555555555565555555554432 1000 0223444444
Q ss_pred HHHHc-CCHHHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH------hhHHHH
Q 007640 411 GYCRN-GQLNQGLKLCDEMKGKNLS-PN----VYTFTILINALCKENRLNDARRFLKQLKWNDLVPKP------FMYNPV 478 (595)
Q Consensus 411 ~~~~~-g~~~~A~~l~~~m~~~~~~-p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l 478 (595)
.|... |++++|+..|++..+.... .+ ..++..+...+.+.|++++|...+++..+....... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 44443 5555555555444332100 00 123444444444444444444444444443222111 023334
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 007640 479 IDGFCKAGNVDEANVIVAEME 499 (595)
Q Consensus 479 i~~~~~~g~~~~A~~l~~~m~ 499 (595)
..++...|++++|...|++..
T Consensus 206 g~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444444
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.05 E-value=1.7e-08 Score=84.22 Aligned_cols=132 Identities=20% Similarity=0.156 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007640 439 TFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHC 518 (595)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 518 (595)
.+..+...+...|++++|..+++++.+.+. .+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 355566666677777777777777665542 255666777777777777777777777776653 335666777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007640 519 MKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 519 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
..|++++|..+++++.+.. +.+...+..++.++.+.|++++|.+.++++.+..+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 8888888888888777754 44566777778888888888888888887776543
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.01 E-value=1.5e-07 Score=89.86 Aligned_cols=242 Identities=11% Similarity=0.059 Sum_probs=140.6
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhH
Q 007640 165 SLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADE 244 (595)
Q Consensus 165 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 244 (595)
-..-.|++..++.-...+ ...........+.++|...|+++.. ..-.|....+..+...+ ..+
T Consensus 22 n~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~---- 84 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK---- 84 (310)
T ss_dssp HHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----
T ss_pred HHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----
Confidence 334567777776633222 1122334445566777777776631 11233433444443333 221
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 245 AVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGC-SPDIVTYNTLISGLCRVNEVARGHELLKEVK 323 (595)
Q Consensus 245 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~ 323 (595)
|+..|++....+ .++..++..+..++...|++++|++++.+....+- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777766554 34555566777777778888888888877654432 1245666677777778888888888887776
Q ss_pred hcCCCCC-----CHhhHHHHHHHHH--h--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 324 FKSEFSP-----DVVTYTSVISGYC--K--LGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERML 394 (595)
Q Consensus 324 ~~~~~~p-----~~~~~~~ll~~~~--~--~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 394 (595)
... | +..+...|+.++. . .+++.+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.
T Consensus 164 ~~~---~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NAI---EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHS---CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hcC---ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 543 5 2444455554422 2 23777888888887654 3443333444446777777777777777654
Q ss_pred hCC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 007640 395 SFG---------YLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGK 431 (595)
Q Consensus 395 ~~g---------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (595)
+.- -+-|..++..+|......|+ +|.+++.++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 420 02345556455555555565 667777777665
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.99 E-value=2.5e-07 Score=88.25 Aligned_cols=244 Identities=10% Similarity=0.010 Sum_probs=113.5
Q ss_pred HHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007640 200 SCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKK 279 (595)
Q Consensus 200 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 279 (595)
-..-.|.+..++.-...+... ........+.++|...|++... ....|....+..+...+ ..+
T Consensus 22 n~fy~G~yq~~i~e~~~~~~~---~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~---- 84 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKFSKV---TDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK---- 84 (310)
T ss_dssp HHHTTTCHHHHTHHHHTSSCC---CCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----
T ss_pred HHHHhhHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----
Confidence 334456666666644443321 1222333344666666655531 11223333333333332 211
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 007640 280 AFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMN 359 (595)
Q Consensus 280 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 359 (595)
|...|++..+.+ .++..++..+...+...|++++|++++.+....+...-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555433 3444444455566666666666666666654332111234455555666666666666666666665
Q ss_pred HCCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 007640 360 SCGIKP-----SAVTFNVLIDGF--GKVG--NMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKG 430 (595)
Q Consensus 360 ~~g~~p-----~~~~~~~ll~~~--~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (595)
+. .| +..+...|+.++ ...| +..+|..+|+++.+. .|+..+...++.++.+.|++++|...++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 53 34 234444444442 1122 556666666665443 23322223333355555666666555554433
Q ss_pred CC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007640 431 KN---------LSPNVYTFTILINALCKENRLNDARRFLKQLKWND 467 (595)
Q Consensus 431 ~~---------~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 467 (595)
.. -+.|..++..++......|+ +|.+++.++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 20 02234444333333333444 5555555555443
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.99 E-value=2.8e-08 Score=96.10 Aligned_cols=166 Identities=9% Similarity=-0.090 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhccCCCCc-----cCHH
Q 007640 158 TYNLVMRSLCEMGLHDSVQVVFDYMRSD----GHLPN-SPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVT-----MSTF 227 (595)
Q Consensus 158 ~y~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~ 227 (595)
.|......|...|++++|...|++..+. |-+++ ..+|..+...|.+.|++++|+..+++..+.... ....
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555566666777777777777666542 21111 345666666666666666666666655432100 0123
Q ss_pred HHHHHHHHHHHc-CCHhHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-----
Q 007640 228 MYNSLLNALVKQ-NNADEAVYMFKEYFRLYSQP-D----TWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDI----- 296 (595)
Q Consensus 228 ~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----- 296 (595)
+++.+...|... |++++|+..|++.++..+.. + ..+++.+...+.+.|++++|+..|++..+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 455555555554 55666655555554432110 0 233445555555555555555555555443211111
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 297 -VTYNTLISGLCRVNEVARGHELLKEVK 323 (595)
Q Consensus 297 -~t~~~li~~~~~~g~~~~A~~~~~~~~ 323 (595)
..|..+..++...|++++|...+++..
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 023444444555555555555555544
No 92
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.97 E-value=1.4e-06 Score=90.48 Aligned_cols=370 Identities=10% Similarity=-0.055 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHhccCC-CC-ccCHHHHHHH
Q 007640 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGK-CDAAKGLLSQFRPG-EV-TMSTFMYNSL 232 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~-~~-~~~~~~~~~l 232 (595)
..+|...+..+-. |+++.+..+|++.... .|+...|...+....+.+. .+....+|+.+... |. ..+..+|...
T Consensus 15 R~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 15 SAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 3445555554443 6666666666666653 3566666666665555542 23344555554431 21 2345555555
Q ss_pred HHHHH----HcCCHhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007640 233 LNALV----KQNNADEAVYMFKEYFRLYSQPDT-WTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLC 307 (595)
Q Consensus 233 i~~~~----~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 307 (595)
+..+. ..++.+.+..+|++.+... ..+. ..|..... +........+..++.+ .
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P-~~~~~~lw~~Y~~-fE~~~~~~~~~~~~~~-------------------~- 149 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTP-MGSLSELWKDFEN-FELELNKITGKKIVGD-------------------T- 149 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSC-CTTHHHHHHHHHH-HHHHHCHHHHHHHHHH-------------------H-
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHH-HHHHhccccHHHHHHH-------------------H-
Confidence 55443 2345566666666666521 1111 11111111 0011111111111111 1
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC--C-----hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007640 308 RVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLG--K-----MDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKV 380 (595)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g--~-----~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~ 380 (595)
.+.+..|..+++.+...- -..+...|...+..-...+ - .+.+..+|++++... +.+...|...+.-+...
T Consensus 150 -~~~y~~ar~~y~~~~~~~-~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~ 226 (493)
T 2uy1_A 150 -LPIFQSSFQRYQQIQPLI-RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGI 226 (493)
T ss_dssp -HHHHHHHHHHHHHHHHHH-HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHT
T ss_pred -hHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 112333344443333210 0012334555444322211 1 345667888877643 45567777777777888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC---------CCCC---CHHHHHHHHHHHH
Q 007640 381 GNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGK---------NLSP---NVYTFTILINALC 448 (595)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------~~~p---~~~~~~~ll~~~~ 448 (595)
|+.+.|..++++.... +.+...+. .|....+.++. ++.+.+. +..+ ....|...+....
T Consensus 227 ~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~ 297 (493)
T 2uy1_A 227 GQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVL 297 (493)
T ss_dssp TCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHH
Confidence 8899999999888876 33332222 22222121222 2222111 0001 1244566666666
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007640 449 KENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAG-NVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAI 527 (595)
Q Consensus 449 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 527 (595)
+.++.+.|..+|+.. .. ...+..+|...+..-...+ +.+.|..+|+...+.. +-+...+...+.-....|+.+.|.
T Consensus 298 r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR 374 (493)
T 2uy1_A 298 KKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENAR 374 (493)
T ss_dssp HHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 778899999999998 32 2234445543333333334 6999999999988753 224555666777777899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007640 528 SIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 528 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
.+|+++. .....|...+..-...|+.+.+.++++++.+
T Consensus 375 ~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 375 ALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999872 3567788888877888999999999988875
No 93
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.96 E-value=9.8e-08 Score=87.42 Aligned_cols=175 Identities=10% Similarity=0.036 Sum_probs=88.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 007640 386 AEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKEN----RLNDARRFLK 461 (595)
Q Consensus 386 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g----~~~~A~~~~~ 461 (595)
|...|++..+.| +...+..+...|...+++++|+..|++..+.| +...+..|...|.. + ++++|.++|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 334444444432 44444455555555555555555555555443 34444444444444 3 5555555555
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 007640 462 QLKWNDLVPKPFMYNPVIDGFCK----AGNVDEANVIVAEMEEKRCK-PDKVTFTILIIGHCM----KGRMVEAISIFNK 532 (595)
Q Consensus 462 ~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~~ 532 (595)
+..+.+ ++..+..|...|.. .+++++|.++|++..+.|.. .+...+..|...|.. .+++++|+.+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554443 34445555555544 45566666666665554311 014455555555555 5566666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcC
Q 007640 533 MLRIGCAPDDITVNSLISCLLKG-G-----MPNEAFRIMQRASEDQ 572 (595)
Q Consensus 533 m~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 572 (595)
..+. +.+...+..|..+|... | ++++|+++++++.+.+
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6554 12333455555555432 2 5666666666665544
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.95 E-value=2.8e-08 Score=82.83 Aligned_cols=128 Identities=15% Similarity=0.115 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHH
Q 007640 158 TYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALV 237 (595)
Q Consensus 158 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 237 (595)
.|..+...+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|...++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45566666667777777777777666543 3455556666666666666666666666655433 234555555666666
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007640 238 KQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMG 288 (595)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (595)
..|++++|...++++.+..+ .+...+..+...+...|++++|...++++.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 66666666666666655442 344555555566666666666666665554
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.93 E-value=5.5e-08 Score=92.27 Aligned_cols=189 Identities=9% Similarity=-0.086 Sum_probs=104.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC--CCCHHHH
Q 007640 366 SAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPD---VVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNL--SPNVYTF 440 (595)
Q Consensus 366 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~--~p~~~~~ 440 (595)
+...+..+...+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|+..|++..+... +.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34455555566666666666666666666542 112 44555666666666666666666666655421 1123445
Q ss_pred HHHHHHHHH--------cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007640 441 TILINALCK--------ENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTI 512 (595)
Q Consensus 441 ~~ll~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 512 (595)
..+..++.. .|++++|...|+++.+..+. +......+... ..+... -...+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~--------------~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKI--------------RELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHH--------------HHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHH--------------HHHHHH----HHHHHHH
Confidence 555555555 66666666666666554321 12222111000 000000 0011345
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCC
Q 007640 513 LIIGHCMKGRMVEAISIFNKMLRIGCA-P-DDITVNSLISCLLKG----------GMPNEAFRIMQRASEDQNL 574 (595)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~ 574 (595)
+...|...|++++|+..|+++++.... + ....+..++.+|... |++++|+..++++++..+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 566777788888888888877764211 1 245666777777655 7778888888887776653
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.91 E-value=4.5e-08 Score=89.38 Aligned_cols=192 Identities=13% Similarity=0.035 Sum_probs=103.5
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHH
Q 007640 155 SFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLN 234 (595)
Q Consensus 155 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 234 (595)
++..+......+...|++++|+..|+...+.. +.+...+... . +. ..........+.+..
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~-----~-------------~~-~~~~~~~~~~~~lg~ 62 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWT-----N-------------VD-KNSEISSKLATELAL 62 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHH-----H-------------SC-TTSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHh-----h-------------hc-chhhhhHHHHHHHHH
Confidence 34455556667788899999999998888753 2233333330 0 00 001112223344666
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC--H
Q 007640 235 ALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNE--V 312 (595)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~--~ 312 (595)
.+.+.|++++|+..|++.++..+ .+...+..+...+...|++++|...|++..+.. +-+..++..+...|...|+ .
T Consensus 63 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 63 AYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHH
Confidence 66666666666666666666553 356666666666666666666666666666432 2245556666655544432 2
Q ss_pred HHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 007640 313 ARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVL 373 (595)
Q Consensus 313 ~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 373 (595)
+.+...++.... ..|....+..+..++...|++++|...|++..+. .|+......+
T Consensus 141 ~~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l 196 (208)
T 3urz_A 141 KKLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHH
T ss_pred HHHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 334444444321 1222223333444555566777777777776653 4555444433
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.91 E-value=3.1e-08 Score=94.04 Aligned_cols=188 Identities=10% Similarity=-0.010 Sum_probs=115.8
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHhccCCCC--ccCHHH
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPN---SPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEV--TMSTFM 228 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~ 228 (595)
.+...+..+...+.+.|++++|+..|+.+.+.. +.+ ...+..+..++.+.|++++|+..|+++.+... +....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 466677777888888888888888888887754 333 66777788888888888888888888876422 122456
Q ss_pred HHHHHHHHHH--------cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 007640 229 YNSLLNALVK--------QNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYN 300 (595)
Q Consensus 229 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 300 (595)
+..+..++.. .|++++|+..|+++++..+. +......+.......+.. ...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~------------------~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKL------------------ARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHH------------------HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHH------------------HHHHH
Confidence 6677777777 88888888888888776542 222222211100000000 01133
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-CHhhHHHHHHHHHhc----------CChhHHHHHHHHHHHC
Q 007640 301 TLISGLCRVNEVARGHELLKEVKFKSEFSP-DVVTYTSVISGYCKL----------GKMDKATGIYNEMNSC 361 (595)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~----------g~~~~A~~l~~~m~~~ 361 (595)
.+...|.+.|++++|+..|+.+....+-.+ ....+..+..+|... |++++|...|+++.+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 455666666777777777666655431111 123455555566544 6667777777776654
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.89 E-value=1.6e-07 Score=85.93 Aligned_cols=175 Identities=13% Similarity=0.033 Sum_probs=100.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 007640 351 ATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNG----QLNQGLKLCD 426 (595)
Q Consensus 351 A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~l~~ 426 (595)
|++.|++..+.| +...+..+...|...+++++|...|++..+.| +...+..|...|.. + ++++|+..|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 445555555543 44455555555555566666666666655543 34455555555554 4 5666666666
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHH----cCCHHHHHHHHHH
Q 007640 427 EMKGKNLSPNVYTFTILINALCK----ENRLNDARRFLKQLKWNDLV-PKPFMYNPVIDGFCK----AGNVDEANVIVAE 497 (595)
Q Consensus 427 ~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~l~~~ 497 (595)
+..+.| +...+..|...|.. .+++++|.+++++..+.+.. .++..+..|...|.. .+++++|..+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 665544 44555555555554 56666666666666655421 014566666666666 5667777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 007640 498 MEEKRCKPDKVTFTILIIGHCMK-G-----RMVEAISIFNKMLRIG 537 (595)
Q Consensus 498 m~~~g~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g 537 (595)
..+. ..+...+..|...|... | ++++|..+|++..+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6665 12344555555555542 2 6777777777776665
No 99
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.89 E-value=5.3e-08 Score=103.82 Aligned_cols=154 Identities=11% Similarity=-0.014 Sum_probs=115.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007640 380 VGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRF 459 (595)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 459 (595)
.|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478889999999887753 3357788889999999999999999999998774 55788888999999999999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 007640 460 LKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMK---GRMVEAISIFNKMLRI 536 (595)
Q Consensus 460 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 536 (595)
+++..+... .+...+..+...|.+.|++++|.+.+++..+.. +.+...+..+...+... |++++|.+.+++.++.
T Consensus 80 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999887763 367888999999999999999999999988764 23677888888899998 9999999999999886
Q ss_pred C
Q 007640 537 G 537 (595)
Q Consensus 537 g 537 (595)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 5
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.88 E-value=2.3e-08 Score=108.77 Aligned_cols=171 Identities=10% Similarity=-0.089 Sum_probs=83.7
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 007640 378 GKVGNMVSAEYMRERML--------SFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCK 449 (595)
Q Consensus 378 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~ 449 (595)
...|++++|...+++.. +.. +.+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 44455555555555554 211 2233445555555555555555555555554432 3344555555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007640 450 ENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISI 529 (595)
Q Consensus 450 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 529 (595)
.|++++|.+.|++..+.+.. +...|..+..++.+.|++++ .+.|++..+.. +.+...|..+..++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555544322 34455555555555555555 55555555442 11344555555555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh
Q 007640 530 FNKMLRIGCAPDDITVNSLISCLLK 554 (595)
Q Consensus 530 ~~~m~~~g~~p~~~~~~~l~~~~~~ 554 (595)
|+++++.. +-+...+..+..++..
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC-
T ss_pred HHhhcccC-cccHHHHHHHHHHHHc
Confidence 55554432 1123344444444443
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.88 E-value=5.2e-08 Score=88.98 Aligned_cols=171 Identities=9% Similarity=-0.005 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHhh
Q 007640 368 VTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLP-DVVTFSS----------------LIDGYCRNGQLNQGLKLCDEMKG 430 (595)
Q Consensus 368 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~----------------li~~~~~~g~~~~A~~l~~~m~~ 430 (595)
..+......+...|++++|...|++..+.. | +...|.. +..+|.+.|++++|+..|++..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334445556778889999999988888753 3 3345555 66667777777777777777766
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHH
Q 007640 431 KNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGN--VDEANVIVAEMEEKRCKPDKV 508 (595)
Q Consensus 431 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~ 508 (595)
.. |-+...+..+...+...|++++|...++++.+.++. +..+|..+...|...|+ .+.+...++.... ..|...
T Consensus 83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (208)
T 3urz_A 83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY 158 (208)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence 53 445666777777777777777777777777665532 56666666666655443 3334444444331 122222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007640 509 TFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVN 546 (595)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 546 (595)
.+.....++...|++++|+..|++.++. .|+.....
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~ 194 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 3333444555567777777777776653 45554433
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.87 E-value=3.4e-07 Score=84.60 Aligned_cols=192 Identities=13% Similarity=0.013 Sum_probs=120.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC-CC-HHHHH
Q 007640 366 SAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYL-P-DVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLS-PN-VYTFT 441 (595)
Q Consensus 366 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~-~~~~~ 441 (595)
+...+..+...+...|++++|...|+++.+.... + ....+..+..+|.+.|++++|+..|+++.+.... +. ...+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445556667788888888888888888764311 1 1356777788888888888888888888765311 11 12444
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 007640 442 ILINALCK------------------ENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRC 503 (595)
Q Consensus 442 ~ll~~~~~------------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 503 (595)
.+..++.. .|++++|...|+++.+..+. +...+....... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHH-----
Confidence 45555544 34555566666555544321 122221111000 000000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 007640 504 KPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPD---DITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLP 577 (595)
Q Consensus 504 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 577 (595)
......+...+.+.|++++|+..|+++++.. +.+ ...+..++.+|.+.|++++|++.++++...++...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 0111345667889999999999999999853 222 256888999999999999999999999988765443
No 103
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.83 E-value=5.6e-06 Score=85.94 Aligned_cols=358 Identities=8% Similarity=-0.017 Sum_probs=213.9
Q ss_pred CCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCC-chHHHHHHHHHHH-CCC-CCCHHHHHHHHHHHH----hcCC
Q 007640 134 DNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGL-HDSVQVVFDYMRS-DGH-LPNSPMIEFFVSSCI----RAGK 206 (595)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~-~~~A~~~~~~m~~-~~~-~~~~~~~~~li~~~~----~~g~ 206 (595)
++.+.+..+|+-.... .|++..|..-+....+.+. .+....+|+.... .|. +.+...|...+..+. ..++
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 6777788888766543 2699999999988877763 4567888888776 342 457788888887654 3467
Q ss_pred hHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007640 207 CDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYD 286 (595)
Q Consensus 207 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 286 (595)
.+.+..+|++++......-...|......- +......+..++.+.. +.+..|..++++
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~ 162 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGDTL---------------------PIFQSSFQRYQQ 162 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHHH---------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHHHHh---------------------HHHHHHHHHHHH
Confidence 889999999998742111122233222221 1122223333332221 122233333333
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhc--CC-----HHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 007640 287 MGSFGCSPDIVTYNTLISGLCRV--NE-----VARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMN 359 (595)
Q Consensus 287 m~~~g~~p~~~t~~~li~~~~~~--g~-----~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 359 (595)
+...--..+...|...+..-... +- .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..+|++..
T Consensus 163 ~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~--p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi 240 (493)
T 2uy1_A 163 IQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF--YYAEEVYFFYSEYLIGIGQKEKAKKVVERGI 240 (493)
T ss_dssp HHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32100001223444444432211 00 344667788776643 3456677777888888889999999999988
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------CC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007640 360 SCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSF---------GY---LPDVVTFSSLIDGYCRNGQLNQGLKLCDE 427 (595)
Q Consensus 360 ~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~---------g~---~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 427 (595)
.. +.+...+. .|....+.++. ++.+.+. +. ......|...+..+.+.+..+.|..+|++
T Consensus 241 ~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~ 311 (493)
T 2uy1_A 241 EM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIE 311 (493)
T ss_dssp HH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 76 33332222 12222111111 2222211 00 01124567777777778889999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 007640 428 MKGKNLSPNVYTFTILINALCK-ENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPD 506 (595)
Q Consensus 428 m~~~~~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 506 (595)
. ... ..+...|......-.. .++.+.|..+|+...+.- +.++..+...++...+.|+.+.|..+|+++. ..
T Consensus 312 A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~ 383 (493)
T 2uy1_A 312 L-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KT 383 (493)
T ss_dssp H-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CB
T ss_pred h-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HH
Confidence 9 321 2344455432222222 346999999999988754 2245567778888889999999999999973 25
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 507 KVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 507 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
...|...+.--...|+.+.+..+++++.+
T Consensus 384 ~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 384 SRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67788888777788999999999998875
No 104
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.82 E-value=5.7e-07 Score=86.58 Aligned_cols=222 Identities=10% Similarity=-0.024 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HHc---CCHH
Q 007640 349 DKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVG--NMVSAEYMRERMLSFGYLPDVVTFSSLIDGY----CRN---GQLN 419 (595)
Q Consensus 349 ~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~----~~~---g~~~ 419 (595)
++|+++++.++... +-+...|+.--.++...| ++++++..++.+.... +-+..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45555555555432 222333444444444444 5555555555555432 11233333332222 233 4566
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC------HHHH
Q 007640 420 QGLKLCDEMKGKNLSPNVYTFTILINALCKENRLN--DARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGN------VDEA 491 (595)
Q Consensus 420 ~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~A 491 (595)
+++.+++.+.+.. +-+..+|+.-...+.+.|.++ ++.+.++++.+.++. |...|+.-...+.+.+. ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 6666666665543 445555555555555556555 666666666665543 55556555555555554 6666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007640 492 NVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVE-AISIFNKMLRIG--CAPDDITVNSLISCLLKGGMPNEAFRIMQRA 568 (595)
Q Consensus 492 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 568 (595)
++.+++++.... -|...|+.+...+.+.|+..+ +..+.+++.+.+ -..+...+..++++|.+.|+.++|.++++.+
T Consensus 206 l~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 777766666532 266666666666666665333 444555544322 1345566667777777777777777777776
Q ss_pred Hh-cCCCC
Q 007640 569 SE-DQNLQ 575 (595)
Q Consensus 569 ~~-~~~~~ 575 (595)
.+ .+++.
T Consensus 285 ~~~~Dpir 292 (306)
T 3dra_A 285 KSKYNPIR 292 (306)
T ss_dssp HHTTCGGG
T ss_pred HhccChHH
Confidence 65 34433
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.81 E-value=2.9e-08 Score=107.95 Aligned_cols=131 Identities=10% Similarity=-0.020 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 007640 225 STFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLIS 304 (595)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 304 (595)
+...+..+...+...|++++|+..|++..+..+ .+...|..+..+|...|++++|...|++..+.. +-+...+..+..
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~ 509 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAA 509 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 334444445555555555555555555444432 244444455555555555555555555544321 113344444555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007640 305 GLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNS 360 (595)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 360 (595)
.+.+.|++++ .+.|++..... +.+...|..+..++.+.|++++|++.|++..+
T Consensus 510 ~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 510 TAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 5555555555 55555544332 22334455555555555555555555555444
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.81 E-value=1.1e-07 Score=91.77 Aligned_cols=166 Identities=15% Similarity=0.054 Sum_probs=118.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhH-HHHH
Q 007640 401 DVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMY-NPVI 479 (595)
Q Consensus 401 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~li 479 (595)
+...+..+...+...|++++|...|++..... +-+...+..+...+...|++++|...++++.... |+.... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 44556667777778888888888888877664 4566777778888888888888888888776554 333322 2223
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCH
Q 007640 480 DGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCA-PDDITVNSLISCLLKGGMP 558 (595)
Q Consensus 480 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~ 558 (595)
..+...++.++|.+.+++..+.. +.+...+..+...+...|++++|+..|+++++.... .+...+..++..|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 33556677777888888877663 336777788888888888888888888888875311 1256778888888888888
Q ss_pred HHHHHHHHHHHh
Q 007640 559 NEAFRIMQRASE 570 (595)
Q Consensus 559 ~~A~~~~~~~~~ 570 (595)
++|...+++.+.
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 888888877654
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.80 E-value=1.2e-07 Score=84.00 Aligned_cols=160 Identities=10% Similarity=0.050 Sum_probs=85.9
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHH-HH
Q 007640 159 YNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNA-LV 237 (595)
Q Consensus 159 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~ 237 (595)
+..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++++.... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4445556666677777777776665543 4455666666666667777777777776665543 233333222211 11
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 007640 238 KQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSP-DIVTYNTLISGLCRVNEVARGH 316 (595)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~ 316 (595)
..+....|+..|++.++..+ .+...+..+...+...|++++|...|+++.+..-.+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22223345555666555443 245555566666666666666666666655432111 1334555555555555555555
Q ss_pred HHHHHH
Q 007640 317 ELLKEV 322 (595)
Q Consensus 317 ~~~~~~ 322 (595)
..|++.
T Consensus 165 ~~y~~a 170 (176)
T 2r5s_A 165 SKYRRQ 170 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.80 E-value=1.2e-07 Score=83.99 Aligned_cols=161 Identities=11% Similarity=0.026 Sum_probs=87.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 007640 194 IEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQG-LS 272 (595)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~ 272 (595)
+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|++++|+..|++..+..+ +...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 4455566667777777777777776543 34566667777777777777777777777655433 33332222111 11
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 007640 273 RIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKAT 352 (595)
Q Consensus 273 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 352 (595)
..+...+|...+++..+.. +-+...+..+...+...|++++|...|+++....+-..+...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2122233455555555321 223455555555666666666666666655543311112335555555556666666666
Q ss_pred HHHHHH
Q 007640 353 GIYNEM 358 (595)
Q Consensus 353 ~l~~~m 358 (595)
..|++.
T Consensus 165 ~~y~~a 170 (176)
T 2r5s_A 165 SKYRRQ 170 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.80 E-value=2.4e-07 Score=89.17 Aligned_cols=166 Identities=11% Similarity=0.025 Sum_probs=125.7
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHH-HHH
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMY-NSL 232 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l 232 (595)
.+...+..+...+.+.|++++|+..|+++.+.. +.+...+..+...+.+.|++++|...++++.... |+.... ...
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 456677788888899999999999999988865 6677888889999999999999999999887753 344333 233
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCC
Q 007640 233 LNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCS-PDIVTYNTLISGLCRVNE 311 (595)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~ 311 (595)
...+...++.+.|...|++.....+ .+...+..+...+...|++++|...|.++.+..-. .+...+..++..+...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 3346677788888888888887765 57788888888888888888888888888764211 125567777777777787
Q ss_pred HHHHHHHHHHHH
Q 007640 312 VARGHELLKEVK 323 (595)
Q Consensus 312 ~~~A~~~~~~~~ 323 (595)
.++|...+++..
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 777777776543
No 110
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.79 E-value=2.4e-06 Score=82.44 Aligned_cols=165 Identities=13% Similarity=0.023 Sum_probs=123.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HhhHH
Q 007640 407 SLIDGYCRNGQLNQGLKLCDEMKGKNL-SPNV----YTFTILINALCKENRLNDARRFLKQLKWNDLV-PK----PFMYN 476 (595)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~~~-~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~ 476 (595)
..+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|...++++...... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678888999999999998876431 2221 12334666667778999999999998874322 22 23689
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHH
Q 007640 477 PVIDGFCKAGNVDEANVIVAEMEE----K-RCKPD-KVTFTILIIGHCMKGRMVEAISIFNKMLRI----GCAPD-DITV 545 (595)
Q Consensus 477 ~li~~~~~~g~~~~A~~l~~~m~~----~-g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~ 545 (595)
.+...|...|++++|...++++.+ . +..+. ..+|..+...|.+.|++++|+.++++.++. +..+. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999999874 1 11222 237788999999999999999999988862 22232 6788
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhc
Q 007640 546 NSLISCLLKGGM-PNEAFRIMQRASED 571 (595)
Q Consensus 546 ~~l~~~~~~~g~-~~~A~~~~~~~~~~ 571 (595)
..++.+|.+.|+ +++|.+.++++.+-
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 999999999995 69999999998753
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.78 E-value=2.5e-08 Score=85.84 Aligned_cols=141 Identities=7% Similarity=-0.082 Sum_probs=78.1
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 007640 412 YCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEA 491 (595)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 491 (595)
+...|++++|+..+....... +.+...+..+...|.+.|++++|.+.+++..+.++. ++.+|..+..+|.+.|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHH
Confidence 334455666666666554431 122334445556666666666666666666655432 456666666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007640 492 NVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISI-FNKMLRIGCAPDDITVNSLISCLLKGG 556 (595)
Q Consensus 492 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~p~~~~~~~l~~~~~~~g 556 (595)
...|++..+.. +-+...|..+...|.+.|++++|.+. ++++++.. +-++.+|......+...|
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 66666666542 12455666666666666666554443 45555543 334455555555555544
No 112
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.77 E-value=3.4e-06 Score=81.16 Aligned_cols=223 Identities=4% Similarity=-0.041 Sum_probs=142.6
Q ss_pred HHcCCc-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHhccCCCCccCHHHHHHHHHHH----HHc
Q 007640 167 CEMGLH-DSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAG--KCDAAKGLLSQFRPGEVTMSTFMYNSLLNAL----VKQ 239 (595)
Q Consensus 167 ~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~ 239 (595)
.+.|.+ ++|+.+++.++..+ +-+..+|+.--..+...| +++++++.++.+...+ +-+..+|+.-...+ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 344444 58888888888876 566777888777777777 8888888888887654 33445555444444 444
Q ss_pred ---CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC---
Q 007640 240 ---NNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVK--KAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNE--- 311 (595)
Q Consensus 240 ---g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~--- 311 (595)
+++++++.+++++.+..+ .+-.+|+.-...+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCC
T ss_pred cccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccch
Confidence 678888888888887765 47777877777777777777 7888888877653 3356666655555555554
Q ss_pred ---HHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHH
Q 007640 312 ---VARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDK-ATGIYNEMNSCG--IKPSAVTFNVLIDGFGKVGNMVS 385 (595)
Q Consensus 312 ---~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~-A~~l~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~ 385 (595)
++++++.++.+.... +-|...|+.+-..+.+.|+..+ +..+..++.+.+ -+.+...+..+..+|.+.|+.++
T Consensus 199 ~~~~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp HHHHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhHHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 666666666666543 4456666666666666665333 333444433321 12344555556666666666666
Q ss_pred HHHHHHHHHh
Q 007640 386 AEYMRERMLS 395 (595)
Q Consensus 386 A~~~~~~m~~ 395 (595)
|.++++.+.+
T Consensus 277 A~~~~~~l~~ 286 (306)
T 3dra_A 277 SRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666554
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.76 E-value=1.5e-07 Score=91.70 Aligned_cols=155 Identities=8% Similarity=0.009 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-----CHh
Q 007640 404 TFSSLIDGYCRNGQLNQGLKLCDEMKGK----NLSP-NVYTFTILINALCKENRLNDARRFLKQLKWNDLVP-----KPF 473 (595)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~ 473 (595)
+|+.+...|...|++++|+..|++..+. |-+. -..++..+...|.. |++++|+..+++..+..... ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 4555555556666666666665554322 1000 12345555666655 66777766666654321100 134
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------H
Q 007640 474 MYNPVIDGFCKAGNVDEANVIVAEMEEK----RCKPD-KVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPD------D 542 (595)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~ 542 (595)
+++.+...|.+.|++++|+..|++..+. +..+. ...+..++.++...|++++|...|++.+ . .|+ .
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~ 233 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDC 233 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHH
Confidence 5666677777777777777777776542 11111 1244555556666677777777777766 3 221 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHH
Q 007640 543 ITVNSLISCLLKGGMPNEAFR 563 (595)
Q Consensus 543 ~~~~~l~~~~~~~g~~~~A~~ 563 (595)
.....++.++ ..|+.+.+.+
T Consensus 234 ~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 234 AALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHH-HhcCHHHHHH
Confidence 2334444444 4566555544
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.74 E-value=2.6e-07 Score=98.44 Aligned_cols=152 Identities=8% Similarity=-0.069 Sum_probs=76.4
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHH
Q 007640 170 GLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMF 249 (595)
Q Consensus 170 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 249 (595)
|++++|++.|+++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.|
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45556666666555543 3445555666666666666666666666655543 234555555666666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhc
Q 007640 250 KEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRV---NEVARGHELLKEVKFK 325 (595)
Q Consensus 250 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~---g~~~~A~~~~~~~~~~ 325 (595)
++..+..+ .+...+..+...|.+.|++++|.+.|++..+.. +.+...+..+...+... |++++|.+.+++....
T Consensus 81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 66555543 345555566666666666666666666655432 22345555555556555 6666666666655544
No 115
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.72 E-value=1.7e-06 Score=79.83 Aligned_cols=202 Identities=11% Similarity=0.025 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhccCCCCc--cCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH--HHHHH
Q 007640 191 SPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVT--MSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDT--WTFNI 266 (595)
Q Consensus 191 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~ 266 (595)
...+..+...+.+.|++++|+..|+++.+.... .....+..+..++.+.|++++|+..|+++++..+.... .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555556666667777777766666543211 11345555666666667777777777666665432111 12333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH-hhHHHHHHHHHhc
Q 007640 267 LIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDV-VTYTSVISGYCKL 345 (595)
Q Consensus 267 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~ 345 (595)
+..++...|.. .+ ..|..+...+...|++++|...|+++.... |+. ..+......
T Consensus 84 ~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~~l---- 139 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATKRL---- 139 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHHHH----
T ss_pred HHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHHHH----
Confidence 33333332210 00 011112222334567777777777776643 332 222111100
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHH
Q 007640 346 GKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPD----VVTFSSLIDGYCRNGQLNQG 421 (595)
Q Consensus 346 g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A 421 (595)
..+...+. .....+...|.+.|++++|...|+++++.. |+ ...+..+..+|.+.|+.++|
T Consensus 140 ------~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 140 ------VFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp ------HHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ------HHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 00000000 011245566777788888888888777642 32 24566777788888888888
Q ss_pred HHHHHHHhhCC
Q 007640 422 LKLCDEMKGKN 432 (595)
Q Consensus 422 ~~l~~~m~~~~ 432 (595)
.+.++.+...+
T Consensus 204 ~~~~~~l~~~~ 214 (225)
T 2yhc_A 204 EKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhhC
Confidence 88888776653
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.70 E-value=9.8e-08 Score=93.01 Aligned_cols=201 Identities=11% Similarity=-0.020 Sum_probs=139.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007640 345 LGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGK-VGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLK 423 (595)
Q Consensus 345 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 423 (595)
.|++++|.+++++..+.. +.. +.+ .+++++|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 355667777776665421 110 111 46666666666553 345666777777777
Q ss_pred HHHHHhhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CC--CHhhHHHHHHHHHHcCCHHHHHH
Q 007640 424 LCDEMKGK----NLSP-NVYTFTILINALCKENRLNDARRFLKQLKWNDL---VP--KPFMYNPVIDGFCKAGNVDEANV 493 (595)
Q Consensus 424 l~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~p--~~~~~~~li~~~~~~g~~~~A~~ 493 (595)
.|.+..+. +-++ -..+|..+...|...|++++|...+++..+... .+ ...++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 77765432 1111 134677888899999999999999998754311 11 14578888899988 99999999
Q ss_pred HHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 007640 494 IVAEMEEKRCKP-D----KVTFTILIIGHCMKGRMVEAISIFNKMLRI----GCAPD-DITVNSLISCLLKGGMPNEAFR 563 (595)
Q Consensus 494 l~~~m~~~g~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~ 563 (595)
.|++..+..... + ..++..+...|...|++++|+..|++.++. +..+. ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999987541111 1 457888999999999999999999999873 21111 2366777888888999999999
Q ss_pred HHHHHHhcCC
Q 007640 564 IMQRASEDQN 573 (595)
Q Consensus 564 ~~~~~~~~~~ 573 (595)
.+++++ ..+
T Consensus 217 ~~~~al-~~p 225 (307)
T 2ifu_A 217 CVRESY-SIP 225 (307)
T ss_dssp HHHHHT-TST
T ss_pred HHHHHh-CCC
Confidence 999998 554
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.68 E-value=2.6e-06 Score=82.11 Aligned_cols=166 Identities=13% Similarity=0.042 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC---CC--H
Q 007640 404 TFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNV------YTFTILINALCKENRLNDARRFLKQLKWNDLV---PK--P 472 (595)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---p~--~ 472 (595)
.+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|...+++....... +. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4445566777888888888888777665322 22 22334555667778888998888887653221 11 4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-C
Q 007640 473 FMYNPVIDGFCKAGNVDEANVIVAEMEEK-RCKPD-----KVTFTILIIGHCMKGRMVEAISIFNKMLRIG----CAP-D 541 (595)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~ 541 (595)
.+|+.+...|...|++++|...++++.+. ...|+ ..++..+...|...|++++|+.++++.++.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888888899999999999999887621 00122 2578888888999999999999999887631 111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 007640 542 DITVNSLISCLLKGGMPNEA-FRIMQRASE 570 (595)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 570 (595)
..+|..++.+|.+.|++++| ...++++.+
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788889999999999999 777887764
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.67 E-value=1.1e-06 Score=80.05 Aligned_cols=126 Identities=8% Similarity=-0.087 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 007640 404 TFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFC 483 (595)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 483 (595)
.+..+...+...|++++|...|++.. .|+...+..+...+...|++++|...+++...... .+...+..+...|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHH
Confidence 34455566667777777777776653 44666677777777777777777777777665542 25566666777777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 484 KAGNVDEANVIVAEMEEKRCKPDK----------------VTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 484 ~~g~~~~A~~l~~~m~~~g~~p~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
..|++++|.+.|++..+.... +. ..+..+..++...|++++|...|+++++
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HcccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777777777777776665211 12 4556666666667777777776666654
No 119
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.65 E-value=1.3e-07 Score=81.15 Aligned_cols=111 Identities=10% Similarity=0.014 Sum_probs=54.2
Q ss_pred hcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007640 203 RAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFE 282 (595)
Q Consensus 203 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 282 (595)
..|++++|+..++...... +.+...+..+...|.+.|++++|++.|++.++..+ .+..+|..+..+|...|++++|..
T Consensus 9 ~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHHHH
Confidence 3445555555555554421 11222334455555555555555555555555443 245555555555555555555555
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007640 283 FFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGH 316 (595)
Q Consensus 283 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 316 (595)
.|++..+.. +-+...+..+...|.+.|++++|.
T Consensus 87 ~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa 119 (150)
T 4ga2_A 87 CYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRA 119 (150)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHH
Confidence 555554331 123444555555555555544433
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.64 E-value=2.7e-07 Score=88.59 Aligned_cols=197 Identities=12% Similarity=0.026 Sum_probs=124.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 007640 366 SAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILIN 445 (595)
Q Consensus 366 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~ 445 (595)
+...+..+...+...|++++|...+++.++.. +.+...|..+..+|...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44556666777777788888887777777653 2366777788888888888888888888887764 556778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007640 446 ALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVE 525 (595)
Q Consensus 446 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 525 (595)
+|...|++++|...+++..+.+.. +...+...+....+ ..++. -+..........+......+.. + ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 888888888888888887654321 11111112222111 11111 1222333334445444444432 2 3688999
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCC
Q 007640 526 AISIFNKMLRIGCAPDD-ITVNSLISCLLKG-GMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 526 A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~ 573 (595)
|++.+++..+. .|+. .....+...+.+. +.+++|.++|+++.+...
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~ 201 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRK 201 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 99999888764 4544 4444554455554 678899999998887543
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.64 E-value=5.2e-06 Score=80.04 Aligned_cols=126 Identities=10% Similarity=0.027 Sum_probs=57.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCHh----hHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 007640 303 ISGLCRVNEVARGHELLKEVKFKSEFSPDVV----TYTSVISGYCKLGKMDKATGIYNEMNSCGIK-PS----AVTFNVL 373 (595)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~~~~~l 373 (595)
+..+...|++++|.+++++........|+.. .+..+...+...|++++|+..|++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4445556666666666666554332222211 2223444444555566666666665542211 11 1134555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007640 374 IDGFGKVGNMVSAEYMRERMLS----F-GYLPD-VVTFSSLIDGYCRNGQLNQGLKLCDEM 428 (595)
Q Consensus 374 l~~~~~~g~~~~A~~~~~~m~~----~-g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m 428 (595)
...|...|++++|...++++.+ . +..+. ..+|..+...|.+.|++++|+..+++.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5555555555555555555442 1 10111 123444444455555555555544443
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.58 E-value=2.5e-06 Score=73.97 Aligned_cols=131 Identities=11% Similarity=0.013 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 438 YTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGH 517 (595)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 517 (595)
..+..+...+...|++++|...+++...... .+..++..+...+...|++++|...+++..+.. +.+...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 3456666677778888888888887776543 257778888888888888888888888887763 33677788888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhc
Q 007640 518 CMKGRMVEAISIFNKMLRIGCAPDDITVNS--LISCLLKGGMPNEAFRIMQRASED 571 (595)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~ 571 (595)
...|++++|...++++++.. +.+...+.. ++..+.+.|++++|++.+++..+.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 88888999988888888754 344555533 344477788999999988876543
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.57 E-value=4.1e-06 Score=76.22 Aligned_cols=128 Identities=8% Similarity=-0.147 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007640 369 TFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALC 448 (595)
Q Consensus 369 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~ 448 (595)
.+..+...+...|++++|...+++.. .|+...+..+...|...|++++|...+++..... +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 44566677788888888888888764 4577888888888888888888888888887764 556778888888888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCC---------------CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007640 449 KENRLNDARRFLKQLKWNDLVP---------------KPFMYNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 449 ~~g~~~~A~~~~~~~~~~~~~p---------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
..|++++|...+++..+..... ....+..+..++.+.|++++|.+.|++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 8888888888888887765321 1267788888888888888888888888876
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.56 E-value=1.7e-06 Score=71.64 Aligned_cols=98 Identities=11% Similarity=0.013 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007640 474 MYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLL 553 (595)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 553 (595)
.+......|.+.|++++|++.|++.++.. +.+...|..+..++...|++++|+..+++.++.+ +.+...|..++.+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 34444555555555555555555555442 2244555555555555555555555555555543 334455555555555
Q ss_pred hcCCHHHHHHHHHHHHhcCC
Q 007640 554 KGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 554 ~~g~~~~A~~~~~~~~~~~~ 573 (595)
..|++++|++.|+++++..+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HCCCHHHHHHHHHHHHHHCc
Confidence 55555555555555555443
No 125
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.56 E-value=3.6e-07 Score=87.65 Aligned_cols=195 Identities=11% Similarity=-0.026 Sum_probs=123.4
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHH
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLL 233 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 233 (595)
.+...+..+...+.+.|++++|+..|+...+.. +.+...+..+..++.+.|++++|...++++.+.. +.+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 356778888889999999999999999988865 5578888888899999999999999999988764 45677888888
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 007640 234 NALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVA 313 (595)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 313 (595)
.++...|++++|+..|++..+..+. +...+...+....+.. ++.. +..........+......+.. + ..|+.+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRIA---KKKR-WNSIEERRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHHH---HHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHHH---HHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence 8999999999999999888765421 1111111111111111 1111 111222233334444333322 2 257777
Q ss_pred HHHHHHHHHHhcCCCCCCH-hhHHHHHHHHHhc-CChhHHHHHHHHHHH
Q 007640 314 RGHELLKEVKFKSEFSPDV-VTYTSVISGYCKL-GKMDKATGIYNEMNS 360 (595)
Q Consensus 314 ~A~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~-g~~~~A~~l~~~m~~ 360 (595)
+|.+.++...... |+. .....+...+.+. +.+++|.++|..+.+
T Consensus 153 ~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEGH---EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTTT---SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhccc---cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777777665432 433 3333333334443 556777777776654
No 126
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.55 E-value=9e-07 Score=79.84 Aligned_cols=156 Identities=11% Similarity=-0.049 Sum_probs=73.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC----CC-CCCHHHHHHHHHHHHHcCCH
Q 007640 379 KVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGK----NL-SPNVYTFTILINALCKENRL 453 (595)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~-~p~~~~~~~ll~~~~~~g~~ 453 (595)
..|++++|..+++.+... .......+..+...+...|++++|...+++.... +. +....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644433321 1123445556666666666666666666655431 11 11223445555555566666
Q ss_pred HHHHHHHHHHHhC----CCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC
Q 007640 454 NDARRFLKQLKWN----DLVP--KPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRC-KPD----KVTFTILIIGHCMKGR 522 (595)
Q Consensus 454 ~~A~~~~~~~~~~----~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~~~~~li~~~~~~g~ 522 (595)
++|...+++.... +..+ ....+..+...+...|++++|...+++..+... ..+ ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666655554332 1011 123345555555555555555555555442100 001 1123444455555555
Q ss_pred HHHHHHHHHHHHH
Q 007640 523 MVEAISIFNKMLR 535 (595)
Q Consensus 523 ~~~A~~~~~~m~~ 535 (595)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555543
No 127
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.54 E-value=3e-06 Score=70.14 Aligned_cols=109 Identities=9% Similarity=-0.031 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 438 YTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGH 517 (595)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 517 (595)
..+......|.+.|++++|++.|++..+.++ .+..+|..+..+|.+.|++++|+..+++.++.. +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 3455566666677777777777776666553 256667777777777777777777777766653 22566677777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007640 518 CMKGRMVEAISIFNKMLRIGCAPDDITVNSLI 549 (595)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 549 (595)
...|++++|++.|++.++.. +-+...+..|.
T Consensus 92 ~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~ 122 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD-PSNEEAREGVR 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHH
Confidence 77777777777777777653 33444444443
No 128
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.54 E-value=2.8e-05 Score=75.62 Aligned_cols=222 Identities=7% Similarity=-0.054 Sum_probs=137.1
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-C-CHHHH
Q 007640 345 LGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVG-NMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRN-G-QLNQG 421 (595)
Q Consensus 345 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-~~~~A 421 (595)
.+..++|++++++++... +-+...|+.--..+...| ++++++..++.+.... +-+..+|+.-...+... + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHH
Confidence 344456777777766643 234444555555555556 4777777777776653 23555666655555555 5 66777
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC------
Q 007640 422 LKLCDEMKGKNLSPNVYTFTILINALCKENRLN--------DARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGN------ 487 (595)
Q Consensus 422 ~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~--------~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------ 487 (595)
+.+++.+.+.. +-|..+|+.-...+.+.|.++ ++.+..+++.+.++. |...|+.....+.+.++
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchH
Confidence 77777777654 446666665555555544444 777777777776644 67777777777776665
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHCC-----CCCC
Q 007640 488 -VDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRM--------------------VEAISIFNKMLRIG-----CAPD 541 (595)
Q Consensus 488 -~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~~g-----~~p~ 541 (595)
++++++.+++++... +-|...|+.+-..+.+.|+. .+...+..++...+ -.+.
T Consensus 223 ~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 223 SLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 677888888877663 23666776666666665543 23333333333221 1356
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007640 542 DITVNSLISCLLKGGMPNEAFRIMQRASED 571 (595)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (595)
...+..|++.|...|+.++|.++++.+.++
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 777888888888888889999998888643
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.53 E-value=9e-07 Score=75.82 Aligned_cols=95 Identities=12% Similarity=0.012 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007640 439 TFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHC 518 (595)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 518 (595)
.+..+...+.+.|++++|...|+++...++. ++..|..+..+|...|++++|...|++..+.. +.+...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 3444444444455555555555544444321 34444444444444455555555544444432 113344444444444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 007640 519 MKGRMVEAISIFNKMLR 535 (595)
Q Consensus 519 ~~g~~~~A~~~~~~m~~ 535 (595)
..|++++|+..|++.++
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44555555555444444
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.53 E-value=2.3e-06 Score=74.17 Aligned_cols=129 Identities=6% Similarity=-0.114 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHH
Q 007640 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNA 235 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 235 (595)
...|..+...+...|++++|...|+...+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3456677777778888888888888777754 4566777777777777777777777777776543 3456667777777
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHH
Q 007640 236 LVKQNNADEAVYMFKEYFRLYSQPDTWTFNI--LIQGLSRIGEVKKAFEFFYDM 287 (595)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m 287 (595)
+...|++++|...|++..+..+ .+...+.. +...+...|++++|...+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 7777777777777777776543 24444432 333355666666666666554
No 131
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.49 E-value=5.1e-05 Score=73.80 Aligned_cols=176 Identities=6% Similarity=-0.028 Sum_probs=96.3
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHc-C-CH
Q 007640 166 LCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAG-KCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQ-N-NA 242 (595)
Q Consensus 166 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~ 242 (595)
+.+.+..++|+++++.++..+ +-+..+|+.--..+...| .+++++.+++.+.... +-+..+|+.-...+.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 333444456777777776655 455556666666666666 3666777666666554 34555666555555554 5 66
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC---
Q 007640 243 DEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVK--------KAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNE--- 311 (595)
Q Consensus 243 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~--- 311 (595)
++++++++++++..+ .|..+|+.-...+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 666666666666553 35556655555444444444 5566666555432 2245555555444444443
Q ss_pred ----HHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC
Q 007640 312 ----VARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGK 347 (595)
Q Consensus 312 ----~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 347 (595)
++++++.+++..... +-|...|+.+-..+.+.|+
T Consensus 220 ~~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCC
Confidence 455555555554433 3344555554444444443
No 132
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.49 E-value=6.3e-06 Score=67.19 Aligned_cols=113 Identities=18% Similarity=0.135 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 438 YTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGH 517 (595)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 517 (595)
..+..+...+...|++++|.+.++++..... .+..++..+...+...|++++|..+++++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 4455555555566666666666665554432 244555666666666666666666666665542 22455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007640 518 CMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLL 553 (595)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 553 (595)
...|++++|...++++.+.. +.+...+..+..++.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 66666666666666666543 334444444444443
No 133
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.49 E-value=5.2e-07 Score=77.22 Aligned_cols=96 Identities=13% Similarity=-0.112 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 438 YTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGH 517 (595)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 517 (595)
..+..+...+...|++++|...|+.+...++ .+...|..+..+|...|++++|...|++..+.. +.+...+..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 3444455555555555555555555554432 244555555555555555555555555555442 12344455555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 007640 518 CMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~ 535 (595)
...|++++|...|++.++
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555554
No 134
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.48 E-value=3.8e-06 Score=68.52 Aligned_cols=113 Identities=14% Similarity=0.057 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHH
Q 007640 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNA 235 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 235 (595)
...|..+...+...|++++|++.++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4566667777777777777777777776643 4455666666666666677777766666665443 3345566666666
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007640 236 LVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGL 271 (595)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 271 (595)
+...|++++|...|+++.+..+ .+...+..+...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 6666666666666666665543 2344444444443
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.46 E-value=2.8e-06 Score=70.47 Aligned_cols=120 Identities=8% Similarity=-0.120 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHH
Q 007640 153 NHSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSL 232 (595)
Q Consensus 153 ~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 232 (595)
+.+...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 3466677778888888888888888888877754 4566777777777777778888877777776543 3456677777
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007640 233 LNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIG 275 (595)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 275 (595)
...+.+.|++++|...|++..+..+ .+...+..+...+...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence 7777777777777777777766543 23445555555555443
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.46 E-value=5e-06 Score=68.45 Aligned_cols=119 Identities=13% Similarity=0.066 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007640 437 VYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIG 516 (595)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 516 (595)
...+..+...+...|++++|...+++...... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 34555566666666667777666666665432 245666666777777777777777777766552 2245666667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007640 517 HCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMP 558 (595)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 558 (595)
+...|++++|...+++..+.. +.+...+..+..++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 777777777777777776653 34556666666666666553
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.45 E-value=1.7e-06 Score=76.31 Aligned_cols=121 Identities=11% Similarity=0.141 Sum_probs=76.0
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHHcCCH--H
Q 007640 413 CRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDG-FCKAGNV--D 489 (595)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~--~ 489 (595)
...|++++|...+++..... +.+...+..+...|...|++++|...++++.+... .+...+..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchH
Confidence 34566777777777666553 44566677777777777777777777777665542 245566666666 5666776 7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007640 490 EANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 490 ~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
+|...++++.+.. +.+...+..+...+...|++++|...|+++++.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777777766653 224566666666777777777777777777664
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.44 E-value=6.2e-06 Score=77.58 Aligned_cols=128 Identities=8% Similarity=-0.081 Sum_probs=56.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhc
Q 007640 443 LINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPD--KVTFTILIIGHCMK 520 (595)
Q Consensus 443 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~li~~~~~~ 520 (595)
+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 3344444555555555554444332 221133333334445555555555554333220 000 12344444455555
Q ss_pred CCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007640 521 GRMVEAISIFNKMLRIGCAPD--DITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 521 g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
|++++|+..|++.......|. ......+..++.+.|+.++|...|+++....+
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 555555555555543221122 22344444455555555555555555555444
No 139
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.43 E-value=4.2e-06 Score=82.41 Aligned_cols=87 Identities=11% Similarity=-0.041 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 473 FMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCL 552 (595)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 552 (595)
.+|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|+++++.. +.+...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 455555555555666666666665555542 2245555555556666666666666666655543 33445555555566
Q ss_pred HhcCCHHHH
Q 007640 553 LKGGMPNEA 561 (595)
Q Consensus 553 ~~~g~~~~A 561 (595)
.+.|+.++|
T Consensus 275 ~~~~~~~~a 283 (336)
T 1p5q_A 275 QRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665555
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.43 E-value=2.1e-06 Score=77.32 Aligned_cols=156 Identities=16% Similarity=0.018 Sum_probs=81.0
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCC-CCHhhHHHHHHHHHHcCCH
Q 007640 414 RNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKW----NDLV-PKPFMYNPVIDGFCKAGNV 488 (595)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~-p~~~~~~~li~~~~~~g~~ 488 (595)
..|++++|.++++.+... ......++..+...+...|++++|...+++... .+.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644333321 123445566666666666666666666666543 1111 1234556666666666666
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCC
Q 007640 489 DEANVIVAEMEEK----RCKP--DKVTFTILIIGHCMKGRMVEAISIFNKMLRIG-CAPD----DITVNSLISCLLKGGM 557 (595)
Q Consensus 489 ~~A~~l~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~~~~~l~~~~~~~g~ 557 (595)
++|.+.+++..+. +-.| ....+..+...+...|++++|...+++.++.. -..+ ..++..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666665432 1011 12345555666666666666666666655310 0111 1234556666666666
Q ss_pred HHHHHHHHHHHHh
Q 007640 558 PNEAFRIMQRASE 570 (595)
Q Consensus 558 ~~~A~~~~~~~~~ 570 (595)
+++|.+.++++.+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666554
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.43 E-value=3.7e-06 Score=69.26 Aligned_cols=119 Identities=12% Similarity=-0.024 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHH
Q 007640 155 SFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLN 234 (595)
Q Consensus 155 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 234 (595)
+...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 44566777777777888888888887777654 4466677777777777777777777777766543 334666677777
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007640 235 ALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGE 276 (595)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 276 (595)
.+...|++++|...|++..+..+ .+...+..+...+...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 77777777777777777766543 355566666666665554
No 142
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.42 E-value=1.7e-05 Score=76.32 Aligned_cols=162 Identities=7% Similarity=-0.080 Sum_probs=78.1
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---CCC--HHHHHH
Q 007640 232 LLNALVKQNNADEAVYMFKEYFRLYSQPD-----TWTFNILIQGLSRIGEVKKAFEFFYDMGSFGC---SPD--IVTYNT 301 (595)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ 301 (595)
.+..+...|++++|.+.+++..+...... ...+..+...+...|++++|+..+++..+... .+. ..+++.
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34455555556666555555544322110 01122333444555566666666665543211 111 235555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH---hcCCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCC-CHHHHH
Q 007640 302 LISGLCRVNEVARGHELLKEVK---FKSEFSP--DVVTYTSVISGYCKLGKMDKATGIYNEMNSCG----IKP-SAVTFN 371 (595)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~---~~~~~~p--~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g----~~p-~~~~~~ 371 (595)
+...|...|++++|...+++.. ...+..+ ...++..+...|.+.|++++|+..+++..+.. ... -..+|.
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 5666666666666666665554 1110011 11355566666666666666666666654321 001 134455
Q ss_pred HHHHHHHhcCCHHHH-HHHHHHH
Q 007640 372 VLIDGFGKVGNMVSA-EYMRERM 393 (595)
Q Consensus 372 ~ll~~~~~~g~~~~A-~~~~~~m 393 (595)
.+..+|.+.|++++| ...+++.
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHH
Confidence 555556666666665 4444443
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.42 E-value=4.4e-06 Score=69.17 Aligned_cols=117 Identities=9% Similarity=0.027 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007640 436 NVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILII 515 (595)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~ 515 (595)
+...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 344455555555555555555555555554432 244555555555555666666666666555542 224555555556
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007640 516 GHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKG 555 (595)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 555 (595)
.+...|++++|...|++..+.. +.+...+..+..++.+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 6666666666666666655532 22334444444444443
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.41 E-value=2.3e-06 Score=75.50 Aligned_cols=121 Identities=9% Similarity=0.018 Sum_probs=88.6
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHH-HHHcCCH--h
Q 007640 167 CEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNA-LVKQNNA--D 243 (595)
Q Consensus 167 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~ 243 (595)
...|++++|+..++...+.. +.+...+..+...|...|++++|...|+++.+.. +.+...+..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45677888888888877754 5677788888888888888888888888876653 3456677777777 6677887 8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 007640 244 EAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSF 290 (595)
Q Consensus 244 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 290 (595)
+|...|++..+..+ .+...+..+...|...|++++|...|++..+.
T Consensus 99 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888888877654 45677778888888888888888888887754
No 145
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.39 E-value=5.1e-06 Score=66.35 Aligned_cols=104 Identities=15% Similarity=0.019 Sum_probs=85.9
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHH
Q 007640 471 KPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAP--DDITVNSL 548 (595)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l 548 (595)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++.++.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 45567778888888999999999999888763 3367788888888999999999999999998864 44 67888899
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhcCCCCC
Q 007640 549 ISCLLKG-GMPNEAFRIMQRASEDQNLQL 576 (595)
Q Consensus 549 ~~~~~~~-g~~~~A~~~~~~~~~~~~~~~ 576 (595)
..++.+. |++++|.+.++++.+..+.+.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999999 999999999999988776543
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.36 E-value=2.1e-05 Score=73.99 Aligned_cols=140 Identities=9% Similarity=-0.016 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHH
Q 007640 404 TFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPK--PFMYNPVIDG 481 (595)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~ 481 (595)
.+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHH
Confidence 34455667778888888888888877653 443355666667788888888888887554322 111 2367777888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007640 482 FCKAGNVDEANVIVAEMEEKRCKPD--KVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSL 548 (595)
Q Consensus 482 ~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 548 (595)
+...|++++|++.|++.......|. .........++.+.|+.++|...|+++.... |+......|
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAAL 247 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHH
Confidence 8888888888888888875432243 3356667777888888888888888888753 444444333
No 147
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.36 E-value=2.4e-06 Score=73.12 Aligned_cols=100 Identities=9% Similarity=-0.048 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHH
Q 007640 155 SFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLN 234 (595)
Q Consensus 155 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 234 (595)
+...+..+...+.+.|++++|+..|+.+.+.. |.+...|..+..+|...|++++|+..|+++.+.. +.++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 34455566666666677777777776666654 4556666666666666666666666666665543 234555666666
Q ss_pred HHHHcCCHhHHHHHHHHHHHcC
Q 007640 235 ALVKQNNADEAVYMFKEYFRLY 256 (595)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~ 256 (595)
+|.+.|++++|+..|++.++..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 6666666666666666666643
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.34 E-value=5.2e-06 Score=70.87 Aligned_cols=99 Identities=14% Similarity=-0.014 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 007640 225 STFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLIS 304 (595)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 304 (595)
+...+..+...+...|++++|+..|++.+...+ .+...|..+..+|...|++++|...|++..... +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 444555566666666777777777776666543 356666666666667777777777776665432 224555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 007640 305 GLCRVNEVARGHELLKEVKFK 325 (595)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~~~ 325 (595)
+|...|++++|.+.|+.....
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666667777776666666543
No 149
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.33 E-value=5.2e-06 Score=72.16 Aligned_cols=100 Identities=11% Similarity=0.032 Sum_probs=85.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007640 435 PNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILI 514 (595)
Q Consensus 435 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 514 (595)
.+...+..+...+.+.|++++|...|++..+.... +...|..+..+|.+.|++++|...+++.++.. +.+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34567888888899999999999999998877633 68889999999999999999999999988874 33678888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 007640 515 IGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
.+|...|++++|+..|++.++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999998874
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.31 E-value=5.2e-06 Score=70.25 Aligned_cols=96 Identities=13% Similarity=-0.087 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 438 YTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGH 517 (595)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 517 (595)
..+..+...+.+.|++++|...|+.+...++ .+...|..+..++...|++++|...|++..+.. +.+...+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 3444455555666666666666666655442 245555666666666666666666666665543 22444555556666
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 007640 518 CMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~ 535 (595)
...|++++|...|++.++
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666666554
No 151
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.30 E-value=9.8e-06 Score=79.80 Aligned_cols=130 Identities=11% Similarity=-0.048 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCChHHHHHHHHhccC
Q 007640 155 SFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPN---------------SPMIEFFVSSCIRAGKCDAAKGLLSQFRP 219 (595)
Q Consensus 155 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 219 (595)
+...|..+...+.+.|++++|+..|++..+.. +.+ ..+|..+..+|.+.|++++|+..++++.+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678888999999999999999999988854 222 46666677777777777777777777665
Q ss_pred CCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHH
Q 007640 220 GEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKA-FEFFYDM 287 (595)
Q Consensus 220 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m 287 (595)
.. +.+..++..+..+|...|++++|+..|++.++..+ .+...+..+..++.+.|+.++| ..+|+.|
T Consensus 225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 34566666677777777777777777777666543 3556666666666666666666 3344444
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.30 E-value=1.6e-05 Score=65.49 Aligned_cols=96 Identities=8% Similarity=-0.045 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 438 YTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGH 517 (595)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 517 (595)
..+..+...+.+.|++++|...+++..+... .+...|..+..++.+.|++++|...+++..+.. +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 3445555555666666666666666555442 245555566666666666666666666655542 12345555555556
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 007640 518 CMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~ 535 (595)
...|++++|...|++.++
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 666666666666665554
No 153
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.30 E-value=0.00043 Score=66.92 Aligned_cols=185 Identities=8% Similarity=-0.043 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Q 007640 384 VSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNG--QLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENR-LNDARRFL 460 (595)
Q Consensus 384 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~-~~~A~~~~ 460 (595)
+++..+++.+.... +-+..+|+.-...+...+ .+++++.+++.+.+.. +-|..+|+.-...+...|. ++++.+.+
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 44444444444432 224444444444444444 2455555555555443 3344455444444444454 35555555
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHHc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc------
Q 007640 461 KQLKWNDLVPKPFMYNPVIDGFCKA--------------GNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMK------ 520 (595)
Q Consensus 461 ~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~------ 520 (595)
+.+.+.++. |...|+.....+.+. +.++++++.+.+..... +-|...|+.+-..+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcccc
Confidence 555554432 444554444444433 23556666666665542 22455555444444333
Q ss_pred -----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHHhcCC
Q 007640 521 -----GRMVEAISIFNKMLRIGCAPDDITVNSLIS---CLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 521 -----g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
+.++++++.++++++.. +-+.-.+.+++. +....|..++...+++++++-++
T Consensus 247 ~~~~~~~l~~el~~~~elle~~-pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELE-PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred chHHHHHHHHHHHHHHHHHhhC-cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 34566666666666642 222222222221 11235566666667777666554
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.27 E-value=1.1e-05 Score=64.96 Aligned_cols=96 Identities=13% Similarity=0.064 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 438 YTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGH 517 (595)
Q Consensus 438 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 517 (595)
..+..+...+...|++++|...++....... .+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 3444455555555555555555555554432 234455555555555555555555555555442 12344455555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 007640 518 CMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~ 535 (595)
...|++++|...+++..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 555555555555555554
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.26 E-value=4.2e-05 Score=61.39 Aligned_cols=98 Identities=14% Similarity=0.005 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007640 474 MYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLL 553 (595)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 553 (595)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..++.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 44445555555555555555555555432 1244455555555555555555555555555432 234445555555555
Q ss_pred hcCCHHHHHHHHHHHHhcCC
Q 007640 554 KGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 554 ~~g~~~~A~~~~~~~~~~~~ 573 (595)
..|++++|.+.++++.+..+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCT
T ss_pred HHhhHHHHHHHHHHHHHcCC
Confidence 55555555555555555443
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.26 E-value=9.4e-06 Score=67.18 Aligned_cols=96 Identities=15% Similarity=0.066 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 007640 439 TFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRC--KPD----KVTFTI 512 (595)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~----~~~~~~ 512 (595)
++..+...+.+.|++++|+..|++..+..+. +...|..+..+|.+.|++++|++.+++.++... .++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3444455555555555555555555444322 344455555555555555555555555443210 011 123344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 007640 513 LIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
+..++...|++++|++.|++.++
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444445555555555544443
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.25 E-value=1.1e-05 Score=66.38 Aligned_cols=99 Identities=6% Similarity=-0.128 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHH
Q 007640 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNA 235 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 235 (595)
...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456666777777777777777777777654 4566677777777777777777777777766543 3356666667777
Q ss_pred HHHcCCHhHHHHHHHHHHHcC
Q 007640 236 LVKQNNADEAVYMFKEYFRLY 256 (595)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~ 256 (595)
+...|++++|...|++..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhC
Confidence 777777777777777666543
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.25 E-value=2.6e-05 Score=65.08 Aligned_cols=99 Identities=12% Similarity=-0.014 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007640 435 PNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILI 514 (595)
Q Consensus 435 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 514 (595)
.+...+..+...+...|++++|...++....... .+...|..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 3455555666666666666666666666555442 245556666666666666666666666655542 22455555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 007640 515 IGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~ 535 (595)
.++...|++++|+..|+++++
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666665554
No 159
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.23 E-value=1.2e-05 Score=65.98 Aligned_cols=98 Identities=14% Similarity=0.007 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007640 474 MYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLL 553 (595)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 553 (595)
.+..+...+.+.|++++|...+++..+.. +.+...|..+..++...|++++|+..|++.++.. +.+...+..+..+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 35556677788888888888888888763 2367778888888888888888888888888764 456777888888888
Q ss_pred hcCCHHHHHHHHHHHHhcCC
Q 007640 554 KGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 554 ~~g~~~~A~~~~~~~~~~~~ 573 (595)
+.|++++|+..++++++..+
T Consensus 97 ~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHC---
T ss_pred HcCCHHHHHHHHHHHHHhCc
Confidence 88888888888888887654
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.21 E-value=2.8e-05 Score=64.23 Aligned_cols=98 Identities=11% Similarity=0.088 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHHH
Q 007640 474 MYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIG--CAPD----DITVNS 547 (595)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~~ 547 (595)
.+..+...+.+.|++++|++.|++.++.. +-+...|..+..+|...|++++|+..+++.++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 44555666666666666666666666542 2245556666666666666666666666665421 1111 134555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC
Q 007640 548 LISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
++.++...|++++|++.++++++..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6666666666666666666665543
No 161
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.21 E-value=2.6e-05 Score=65.80 Aligned_cols=110 Identities=11% Similarity=-0.036 Sum_probs=70.6
Q ss_pred HHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 007640 213 LLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGC 292 (595)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 292 (595)
.|+++.... +.+...+..+...+.+.|++++|+..|++.+...+ .+...|..+..+|...|++++|...|++.....
T Consensus 6 ~l~~al~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 82 (142)
T 2xcb_A 6 TLAMLRGLS-EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD- 82 (142)
T ss_dssp ---CCTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHcCC-HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 344444432 22344555666677777777777777777776654 466677777777777777777777777776543
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007640 293 SPDIVTYNTLISGLCRVNEVARGHELLKEVKFK 325 (595)
Q Consensus 293 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~ 325 (595)
+.+...+..+..++...|++++|.+.|+.....
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334556666777777777777777777776553
No 162
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.20 E-value=3.2e-05 Score=69.50 Aligned_cols=96 Identities=13% Similarity=-0.023 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 473 FMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCL 552 (595)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 552 (595)
.+|..+..+|...|++++|...+++..+.. +.+...+..+..++...|++++|+..|++.++.. +.+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 566667777777777777777777777653 2356677777777777777777777777777653 44566666777777
Q ss_pred HhcCCHHHHH-HHHHHHHh
Q 007640 553 LKGGMPNEAF-RIMQRASE 570 (595)
Q Consensus 553 ~~~g~~~~A~-~~~~~~~~ 570 (595)
...|+.+++. ..+..+..
T Consensus 167 ~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6666666665 34444433
No 163
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.18 E-value=1.2e-05 Score=68.99 Aligned_cols=133 Identities=16% Similarity=0.005 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HH
Q 007640 439 TFTILINALCKENRLNDARRFLKQLKWNDLV-PK----PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRC-KPD----KV 508 (595)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~ 508 (595)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444555555556666665555554432100 01 23566667777777777777777777654210 011 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007640 509 TFTILIIGHCMKGRMVEAISIFNKMLRI----GCA-PDDITVNSLISCLLKGGMPNEAFRIMQRASED 571 (595)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (595)
.+..+...+...|++++|...+++.++. +.. .....+..+...+...|++++|.+.++++.+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5666777777888888888888877652 111 11345677888888888999998888887754
No 164
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.18 E-value=0.00088 Score=64.75 Aligned_cols=248 Identities=10% Similarity=0.018 Sum_probs=118.1
Q ss_pred hcCCHH-HHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCCHhhHHHHHH
Q 007640 273 RIGEVK-KAFEFFYDMGSFGCSPD-IVTYNTLISGLCRVNE----------VARGHELLKEVKFKSEFSPDVVTYTSVIS 340 (595)
Q Consensus 273 ~~g~~~-~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~p~~~~~~~ll~ 340 (595)
+.|.++ +|+.+++.+... .|+ ...|+.--..+...+. +++++.+++.+.... +-+..+|+.-.-
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~aW~hR~w 116 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCW 116 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 445443 677777777643 333 2334433222222222 345555555555433 234444554444
Q ss_pred HHHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 007640 341 GYCKLG--KMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGN-MVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQ 417 (595)
Q Consensus 341 ~~~~~g--~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 417 (595)
.+.+.| .+++++.+++.+.+.. +-|...|+.-.-++...|. ++++...+..+++.. +-|...|+.....+...+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSC
T ss_pred HHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhh
Confidence 444444 2555555555555543 3344555544444444454 355555555555432 2244444444433333210
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc-----------C
Q 007640 418 LNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKA-----------G 486 (595)
Q Consensus 418 ~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------g 486 (595)
...+- ..+ . ...+.++++.+.+.......+. |..+|+.+-..+.+. +
T Consensus 195 ~~~~~-------~~~-~-------------~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~ 252 (331)
T 3dss_A 195 QPDSG-------PQG-R-------------LPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKST 252 (331)
T ss_dssp CC--------------C-------------CCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHH
T ss_pred ccccc-------ccc-c-------------cchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHH
Confidence 00000 000 0 0002355555666555554432 455555444444333 4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 487 NVDEANVIVAEMEEKRCKPDKVTFTILIIG-----HCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCL 552 (595)
Q Consensus 487 ~~~~A~~l~~~m~~~g~~p~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 552 (595)
.++++++.++++.+. .||. .|..+..+ ....|..+++..++.++++.+ +....-|..+...+
T Consensus 253 ~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D-p~r~~~y~d~~~~~ 319 (331)
T 3dss_A 253 VLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC-GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC-cchhhHHHHHHHHH
Confidence 577888888888876 3443 23322221 123677888888898888754 33344455544433
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.17 E-value=7.8e-05 Score=62.04 Aligned_cols=98 Identities=8% Similarity=-0.147 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 007640 401 DVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVID 480 (595)
Q Consensus 401 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 480 (595)
+...+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...++...+.+.. +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 34445555555555555555555555554442 334445555555555555555555555555444322 3445555555
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 007640 481 GFCKAGNVDEANVIVAEMEE 500 (595)
Q Consensus 481 ~~~~~g~~~~A~~l~~~m~~ 500 (595)
++...|++++|...|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555555443
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.16 E-value=2.2e-05 Score=70.60 Aligned_cols=123 Identities=9% Similarity=-0.133 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCChHHHHHHHHhccC
Q 007640 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNS----------------PMIEFFVSSCIRAGKCDAAKGLLSQFRP 219 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~~~~ 219 (595)
...+..+...+...|++++|+..|++..+.. +.+. .++..+..++.+.|++++|+..+++..+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3467777888889999999999999888743 1121 4555556666666666666666666554
Q ss_pred CCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007640 220 GEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAF 281 (595)
Q Consensus 220 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 281 (595)
.. +.+..++..+..++...|++++|+..|++..+..+ .+...+..+..++...++.+++.
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC--
T ss_pred hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 42 33455555566666666666666666666555443 24445555555555554444443
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=4.9e-05 Score=64.08 Aligned_cols=98 Identities=16% Similarity=0.034 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007640 436 NVYTFTILINALCKENRLNDARRFLKQLKWNDLVPK----PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFT 511 (595)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ 511 (595)
+...+..+...+...|++++|...+++..+.. |+ ...+..+...|...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 44555556666666666666666666665443 33 4455555666666666666666666655542 22445555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 007640 512 ILIIGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
.+..++...|++++|...|++.++.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5556666666666666666666553
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.14 E-value=1.1e-05 Score=64.40 Aligned_cols=98 Identities=10% Similarity=-0.115 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCcc--CHHHHHHHHH
Q 007640 157 KTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTM--STFMYNSLLN 234 (595)
Q Consensus 157 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~ 234 (595)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+.. +. +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 345555556666666666666666655543 3344555555555555555555555555554432 22 3445555555
Q ss_pred HHHHc-CCHhHHHHHHHHHHHcC
Q 007640 235 ALVKQ-NNADEAVYMFKEYFRLY 256 (595)
Q Consensus 235 ~~~~~-g~~~~A~~~~~~m~~~~ 256 (595)
.+.+. |++++|.+.+++.....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 55555 55555555555555443
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=0.00011 Score=74.77 Aligned_cols=197 Identities=10% Similarity=0.015 Sum_probs=101.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC
Q 007640 339 ISGYCKLGKMDKATGIYNEMNSCGIKPSA----------------VTFNVLIDGFGKVGNMVSAEYMRERMLSFG-YLPD 401 (595)
Q Consensus 339 l~~~~~~g~~~~A~~l~~~m~~~g~~p~~----------------~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~p~ 401 (595)
...+.+.|++++|++.|..+.+....... ..+..+...|...|++++|...+..+.+.- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 44567778888888888888775322111 125556667777777777777666654321 0111
Q ss_pred HH----HHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCC-
Q 007640 402 VV----TFSSLIDGYCRNGQLNQGLKLCDEMKGK----NLSP-NVYTFTILINALCKENRLNDARRFLKQLKWN--DLV- 469 (595)
Q Consensus 402 ~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~- 469 (595)
.. +.+.+-..+...|+.++|..++...... +..+ -..++..+...|...|++++|..+++++... +..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 1222222333455666666666654321 1111 2344555666666666666666666655432 111
Q ss_pred --CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC-CC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 470 --PKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK--RC-KP-D--KVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 470 --p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~-~p-~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
....++..++..|...|++++|..++++.... .. .| . ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11335555666666666666666666554422 01 11 1 12344444445556666666666555543
No 170
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.11 E-value=5.3e-05 Score=65.63 Aligned_cols=98 Identities=11% Similarity=-0.001 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 007640 226 TFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISG 305 (595)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 305 (595)
...+..+...+.+.|++++|+..|++.++..+ .+...|..+..+|...|++++|+..|++..+.. +.+...|..+...
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 44455555566666666666666666555443 245555566666666666666666666555432 2235555555666
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 007640 306 LCRVNEVARGHELLKEVKFK 325 (595)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~ 325 (595)
|...|++++|.+.|++....
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 66666666666666655543
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=0.00012 Score=61.63 Aligned_cols=98 Identities=11% Similarity=-0.008 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 007640 401 DVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPN----VYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYN 476 (595)
Q Consensus 401 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 476 (595)
+...+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|...+++..+... .+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHH
Confidence 3444555555555555555555555555443 223 34444555555555555555555555544332 1344555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC
Q 007640 477 PVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 477 ~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
.+..++...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5555555555555555555555543
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.10 E-value=3.5e-05 Score=63.44 Aligned_cols=92 Identities=10% Similarity=0.019 Sum_probs=51.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 007640 443 LINALCKENRLNDARRFLKQLKWNDLVPKP---FMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPD---KVTFTILIIG 516 (595)
Q Consensus 443 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~~~~~li~~ 516 (595)
+...+...|++++|...++.+.+.... +. ..+..+..++...|++++|...++++.+.... + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 444555666666666666666554322 22 35555566666666666666666666554211 2 3445555566
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 007640 517 HCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~ 536 (595)
+...|++++|...|+++++.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666553
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.08 E-value=2.7e-05 Score=63.97 Aligned_cols=99 Identities=10% Similarity=0.052 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCC--ccC----HHHH
Q 007640 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEV--TMS----TFMY 229 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~ 229 (595)
...|..+...+...|++++|+..|+...+.. +.+...+..+...+...|++++|...++++..... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3456667777777777777777777776654 44566666677777777777777777766654321 111 5556
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHc
Q 007640 230 NSLLNALVKQNNADEAVYMFKEYFRL 255 (595)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (595)
..+...+...|++++|...|++..+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 66666666666666666666666664
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.07 E-value=4e-05 Score=62.90 Aligned_cols=110 Identities=13% Similarity=0.079 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 007640 439 TFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRC--KPD----KVTFTI 512 (595)
Q Consensus 439 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~----~~~~~~ 512 (595)
.+..+...+...|++++|...+++...... .+...+..+...+...|++++|...++++.+... .++ ...+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 444555555556666666666665554432 2455555666666666666666666666554321 111 455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007640 513 LIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISC 551 (595)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 551 (595)
+...+...|++++|...|+++.+.. |+......+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 6666666677777777776666642 454444444433
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=9.2e-05 Score=75.39 Aligned_cols=196 Identities=8% Similarity=-0.005 Sum_probs=105.3
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHhccCCCCc-cC
Q 007640 163 MRSLCEMGLHDSVQVVFDYMRSDGHLPN----------------SPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVT-MS 225 (595)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~m~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 225 (595)
.+.+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+..+...-.. .+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567889999999999999887431111 123566777777777777777777766432100 11
Q ss_pred H----HHHHHHHHHHHHcCCHhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CC--
Q 007640 226 T----FMYNSLLNALVKQNNADEAVYMFKEYFRL----YSQP-DTWTFNILIQGLSRIGEVKKAFEFFYDMGSF--GC-- 292 (595)
Q Consensus 226 ~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-- 292 (595)
. .+.+.+...+...|+.+.|..++++.... +..+ -..++..+...|...|++++|..++++.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12233333333456677777666665432 1111 1345556666666667777776666665421 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHH
Q 007640 293 SP-DIVTYNTLISGLCRVNEVARGHELLKEVKFKS---EFSPD--VVTYTSVISGYCKLGKMDKATGIYNEM 358 (595)
Q Consensus 293 ~p-~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~A~~l~~~m 358 (595)
.+ ...++..++..|...|++++|...+++..... ..++. ...+..+...+...|++++|...|.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 11 13345555666666666666666665543211 01111 123344444445555666655555544
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.01 E-value=2.7e-05 Score=63.74 Aligned_cols=95 Identities=11% Similarity=-0.012 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHH
Q 007640 159 YNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVK 238 (595)
Q Consensus 159 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 238 (595)
+..+...+.+.|++++|+..|+...+.. +.+...+..+..++...|++++|+..|++..+.. +.+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3445566667777777777777776654 4566666666677777777777777777666543 3355566666666667
Q ss_pred cCCHhHHHHHHHHHHHc
Q 007640 239 QNNADEAVYMFKEYFRL 255 (595)
Q Consensus 239 ~g~~~~A~~~~~~m~~~ 255 (595)
.|++++|+..|++.++.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777666653
No 177
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.95 E-value=1.1e-05 Score=65.55 Aligned_cols=86 Identities=10% Similarity=0.034 Sum_probs=56.2
Q ss_pred cCCHHHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007640 450 ENRLNDARRFLKQLKWND--LVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAI 527 (595)
Q Consensus 450 ~g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 527 (595)
.|++++|+..+++..+.+ -+.+...+..+...|...|++++|...+++..+.. +-+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 467777777777777653 12235567777777777777777777777777653 224666677777777777777777
Q ss_pred HHHHHHHHC
Q 007640 528 SIFNKMLRI 536 (595)
Q Consensus 528 ~~~~~m~~~ 536 (595)
..+++.++.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777664
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.94 E-value=2e-05 Score=81.54 Aligned_cols=117 Identities=12% Similarity=0.063 Sum_probs=65.6
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007640 447 LCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEA 526 (595)
Q Consensus 447 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 526 (595)
+.+.|++++|.+.+++..+.... +..+|..+..+|.+.|++++|.+.+++..+.. +.+...|..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 44556666666666666554322 45566666666666666666666666666653 22455666666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 007640 527 ISIFNKMLRIGCAPDDITVNSLISC--LLKGGMPNEAFRIMQ 566 (595)
Q Consensus 527 ~~~~~~m~~~g~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 566 (595)
++.++++++.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666666542 2223334444444 566666666666665
No 179
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.92 E-value=0.00014 Score=61.68 Aligned_cols=101 Identities=18% Similarity=-0.010 Sum_probs=70.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC
Q 007640 475 YNPVIDGFCKAGNVDEANVIVAEMEEKRCKP------D-----KVTFTILIIGHCMKGRMVEAISIFNKMLRI-----GC 538 (595)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p------~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~ 538 (595)
+......+.+.|++++|...|++.++..... + ...|..+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444555556666666666666665542110 2 237888888888888999988888888875 11
Q ss_pred CC-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007640 539 AP-DDITV----NSLISCLLKGGMPNEAFRIMQRASEDQNLQ 575 (595)
Q Consensus 539 ~p-~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 575 (595)
.| +...| .....++...|++++|+..|+++++-.+.+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 34 44567 888899999999999999999988765433
No 180
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.92 E-value=0.00025 Score=74.73 Aligned_cols=162 Identities=9% Similarity=-0.010 Sum_probs=127.8
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 007640 417 QLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENR----------LNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAG 486 (595)
Q Consensus 417 ~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 486 (595)
..++|++.++++.... +-+..+|+.--.++...|+ ++++.+.++.+.+.+++ +..+|+.-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 3467788888887764 4456667766666666666 88899999998887755 7788888888888888
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------
Q 007640 487 --NVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKG-RMVEAISIFNKMLRIGCAPDDITVNSLISCLLKG-------- 555 (595)
Q Consensus 487 --~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-------- 555 (595)
+++++++.++++.+...+ +...|+.-...+.+.| .++++++.++++++.. +-+...|......+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 679999999999887544 7888888888888888 8899999999988865 56778888877777663
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCCCccccc
Q 007640 556 ------GMPNEAFRIMQRASEDQNLQLPSWKKA 582 (595)
Q Consensus 556 ------g~~~~A~~~~~~~~~~~~~~~~~~~~~ 582 (595)
+.+++++++++++++..+.+...|...
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~ 232 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYH 232 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 567899999999999888888888754
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.91 E-value=8.7e-05 Score=64.09 Aligned_cols=100 Identities=13% Similarity=0.086 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CC---------CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007640 437 VYTFTILINALCKENRLNDARRFLKQLKWN--------DL---------VPKPFMYNPVIDGFCKAGNVDEANVIVAEME 499 (595)
Q Consensus 437 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--------~~---------~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 499 (595)
...+......+.+.|++++|...|.+.... .. +.+..+|..+..+|.+.|++++|...+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456677778888888899998888887654 10 1123567777888888888888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007640 500 EKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 500 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (595)
+.. +.+...|..+..+|...|++++|...|++.++..
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 763 3356777888888888888888888888887753
No 182
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.91 E-value=2.3e-05 Score=80.67 Aligned_cols=138 Identities=9% Similarity=-0.016 Sum_probs=89.0
Q ss_pred HHHcCCHHHHHHHHHHHHhC---CCCC----CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHH
Q 007640 447 LCKENRLNDARRFLKQLKWN---DLVP----KPFMYNPVIDGFCKAGNVDEANVIVAEMEEK-----RC-KPD-KVTFTI 512 (595)
Q Consensus 447 ~~~~g~~~~A~~~~~~~~~~---~~~p----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~-~p~-~~~~~~ 512 (595)
+...|++++|+.++++..+. -+.+ ...+++.|..+|...|++++|..++++.++. |. .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777665432 1111 2456788888888888888888888776532 21 222 346788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH-----CCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCccccccc
Q 007640 513 LIIGHCMKGRMVEAISIFNKMLR-----IGC--APDDITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSWKKAVP 584 (595)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~-----~g~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 584 (595)
|...|...|++++|+.++++.++ .|- +....+...+..++...|++++|..++.++.+......+.|....+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~~~~~~~ 477 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPMQVMAEP 477 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccCc
Confidence 88888889999999888888775 231 1123445667778888889999999999998876666666655443
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.91 E-value=9e-05 Score=63.24 Aligned_cols=133 Identities=14% Similarity=0.095 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----H
Q 007640 227 FMYNSLLNALVKQNNADEAVYMFKEYFRLYSQ-PD----TWTFNILIQGLSRIGEVKKAFEFFYDMGSFGC-SPD----I 296 (595)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~ 296 (595)
.++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++..+..- ..+ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34555566666666666666666665443211 11 12455555566666666666666655442100 001 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 007640 297 VTYNTLISGLCRVNEVARGHELLKEVKFKSE----FSPDVVTYTSVISGYCKLGKMDKATGIYNEMN 359 (595)
Q Consensus 297 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 359 (595)
..+..+...+...|++++|.+.+++...... .......+..+...+...|++++|.+.+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 2344444555555555555555554432100 00012234444445555555555555555443
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.89 E-value=0.00014 Score=74.69 Aligned_cols=124 Identities=10% Similarity=-0.061 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007640 401 DVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPN---------------VYTFTILINALCKENRLNDARRFLKQLKW 465 (595)
Q Consensus 401 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~---------------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 465 (595)
....|..+...+.+.|++++|+..|++.++.. +.+ ...|..+..+|.+.|++++|...++++.+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34567777888888888888888888877642 112 34555555555555555555555555554
Q ss_pred CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007640 466 NDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAI 527 (595)
Q Consensus 466 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 527 (595)
.... +...|..+..+|...|++++|...|+++.+.. +-+...+..+..++.+.++.++|.
T Consensus 346 ~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 346 LDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred cCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4322 44555555555555555555555555555442 112334444444555555554443
No 185
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.89 E-value=0.00051 Score=56.21 Aligned_cols=93 Identities=15% Similarity=0.022 Sum_probs=43.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 007640 478 VIDGFCKAGNVDEANVIVAEMEEKRCKPDK---VTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPD---DITVNSLISC 551 (595)
Q Consensus 478 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~ 551 (595)
+...+...|++++|...|+++.+.... +. ..+..+..++...|++++|...|+++++.. +.+ ...+..++.+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 344444555555555555555443111 11 244444445555555555555555554432 112 3444445555
Q ss_pred HHhcCCHHHHHHHHHHHHhcC
Q 007640 552 LLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 552 ~~~~g~~~~A~~~~~~~~~~~ 572 (595)
+.+.|++++|.+.++++++..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 555555555555555555444
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.87 E-value=0.00014 Score=72.31 Aligned_cols=140 Identities=9% Similarity=-0.055 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 007640 402 VVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDG 481 (595)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 481 (595)
...+..+...+.+.|++++|+..|++.++.- +.. ......+++. ... +.+..+|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~-------~~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGA-------KLQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHG-------GGH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHH-------HHH-HHHHHHHHHHHHH
Confidence 3456667777777788888887777765420 000 0000111110 011 1235577788888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007640 482 FCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEA 561 (595)
Q Consensus 482 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 561 (595)
|.+.|++++|.+.+++.++.. +.+...|..+..+|...|++++|+..|+++++.. +.+...+..+..++.+.++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888763 2356778888888888888888888888888754 44666777777777777777766
Q ss_pred HH
Q 007640 562 FR 563 (595)
Q Consensus 562 ~~ 563 (595)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 187
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.86 E-value=0.0001 Score=75.82 Aligned_cols=122 Identities=7% Similarity=-0.128 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCChHHHHHHHHhccCC
Q 007640 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPN---------------SPMIEFFVSSCIRAGKCDAAKGLLSQFRPG 220 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 220 (595)
...|..+...+.+.|++++|+..|++..+.. +.+ ...|..+..+|.+.|++++|+..++++.+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4467777778888888888888888877642 112 234444444444444444444444444433
Q ss_pred CCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007640 221 EVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKA 280 (595)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 280 (595)
. +.+...|..+..+|...|++++|+..|++.++..+ .+...+..+..++.+.++.+++
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 2 22344444444444444444444444444444332 2333444444444444444433
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.84 E-value=0.00014 Score=72.38 Aligned_cols=120 Identities=8% Similarity=-0.068 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHCC---------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCC
Q 007640 157 KTYNLVMRSLCEMGLHDSVQVVFDYMRSDG---------------HLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGE 221 (595)
Q Consensus 157 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~---------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 221 (595)
..|..+...+.+.|++++|+..|++..+.- .+.+..+|..+..+|.+.|++++|+..++++.+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 457788889999999999999999887620 01223344444444444455555555444444432
Q ss_pred CccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 007640 222 VTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVK 278 (595)
Q Consensus 222 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 278 (595)
+.+..++..+..+|...|++++|+..|++..+..+ .+...+..+...+...++.+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHH
Confidence 22344444444444444455555444444444332 13333444444443333333
No 189
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.81 E-value=3.9e-05 Score=79.36 Aligned_cols=121 Identities=7% Similarity=-0.108 Sum_probs=93.3
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCC
Q 007640 162 VMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNN 241 (595)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 241 (595)
+...+.+.|++++|++.|++..+.. +.+..++..+..+|.+.|++++|+..+++..+.. +.+..++..+..+|.+.|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 4455667899999999999988865 5678889999999999999999999999988764 4567888889999999999
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 007640 242 ADEAVYMFKEYFRLYSQPDTWTFNILIQG--LSRIGEVKKAFEFFY 285 (595)
Q Consensus 242 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 285 (595)
+++|++.|++..+..+ .+...+..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999888754 244455555555 788888999988887
No 190
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.80 E-value=0.00058 Score=57.13 Aligned_cols=110 Identities=11% Similarity=-0.115 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 007640 452 RLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCM----KGRMVEAI 527 (595)
Q Consensus 452 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~ 527 (595)
++++|.++|++..+.+. ++. . |...|...+.+++|.++|++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 44555555555555541 122 2 4444444445555666666555543 44555555555555 55666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcC
Q 007640 528 SIFNKMLRIGCAPDDITVNSLISCLLK----GGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 528 ~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 572 (595)
.+|++..+.| +...+..|...|.. .+++++|.++++++.+.+
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666665543 34555555555555 556666666666665543
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.74 E-value=4.8e-05 Score=61.66 Aligned_cols=84 Identities=10% Similarity=-0.002 Sum_probs=41.0
Q ss_pred cCChHHHHHHHHhccCCC--CccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007640 204 AGKCDAAKGLLSQFRPGE--VTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAF 281 (595)
Q Consensus 204 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 281 (595)
.|++++|+..|++..+.+ -+.+..++..+...|...|++++|+..|++.++..+ .+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHH
Confidence 345555555555555432 122344455555555555555555555555555443 23445555555555555555555
Q ss_pred HHHHHHh
Q 007640 282 EFFYDMG 288 (595)
Q Consensus 282 ~~~~~m~ 288 (595)
..|++..
T Consensus 82 ~~~~~al 88 (117)
T 3k9i_A 82 ELLLKII 88 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 192
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.73 E-value=0.00011 Score=63.33 Aligned_cols=99 Identities=13% Similarity=0.006 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHC-------CC----------CCCHHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 007640 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSD-------GH----------LPNSPMIEFFVSSCIRAGKCDAAKGLLSQFR 218 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~-------~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 218 (595)
...+......+.+.|++++|+..|....+. +. +.+...|..+..+|.+.|++++|+..++++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 446777888899999999999999988764 10 1122344445555555555555555555554
Q ss_pred CCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 007640 219 PGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRL 255 (595)
Q Consensus 219 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (595)
+.+ +.+...|..+..+|...|++++|...|++.++.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 432 234444555555555555555555555555443
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.71 E-value=6.7e-05 Score=73.80 Aligned_cols=153 Identities=9% Similarity=-0.018 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 007640 402 VVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDG 481 (595)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 481 (595)
...+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ..+|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 456777777888889999999999887765 233321 122233333332221 1378888899
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHH
Q 007640 482 FCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISC-LLKGGMPNE 560 (595)
Q Consensus 482 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~~~ 560 (595)
|.+.|++++|...+++.++.. +.+...|..+..+|...|++++|+..|+++++.. +-+...+..|... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988763 3367888999999999999999999999987643 2344555555555 345567788
Q ss_pred HHHHHHHHHhcCCCC
Q 007640 561 AFRIMQRASEDQNLQ 575 (595)
Q Consensus 561 A~~~~~~~~~~~~~~ 575 (595)
+.+.++++.+..+..
T Consensus 318 a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 318 QKEMYKGIFKGKDEG 332 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHhhCCCCCC
Confidence 888898888766543
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.70 E-value=0.0013 Score=69.16 Aligned_cols=172 Identities=6% Similarity=-0.084 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC--
Q 007640 384 VSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQ----------LNQGLKLCDEMKGKNLSPNVYTFTILINALCKEN-- 451 (595)
Q Consensus 384 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g-- 451 (595)
++|...++.+++.. +-+..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|..-...+.+.+
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 45566666665543 1234445544444444444 777777777777664 456677777776777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------
Q 007640 452 RLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAG-NVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMK---------- 520 (595)
Q Consensus 452 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~---------- 520 (595)
+++++.+.++++.+.+.. +..+|+.-...+.+.| .++++++.++++++.... |...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccc
Confidence 668888888888777654 6777777777777777 788888888888776433 667777766666552
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007640 521 ----GRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNE 560 (595)
Q Consensus 521 ----g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 560 (595)
+.++++++++++++... +-|...|..+...+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 56899999999999865 6678888888888888877554
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.64 E-value=0.0019 Score=54.74 Aligned_cols=94 Identities=13% Similarity=0.028 Sum_probs=59.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCC------C-----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCC
Q 007640 442 ILINALCKENRLNDARRFLKQLKWNDLVP------K-----PFMYNPVIDGFCKAGNVDEANVIVAEMEEK-----RCKP 505 (595)
Q Consensus 442 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p------~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p 505 (595)
.....+.+.|++++|...|++..+..+.. + ...|..+..++.+.|++++|+..+++.++. .+.|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 34444455555555555555554433220 1 226777777777777777777777777664 1134
Q ss_pred C-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 506 D-KVTF----TILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 506 ~-~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
+ ...| .....++...|++++|+..|++.++
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3 4566 7778888888888888888888876
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.62 E-value=0.0018 Score=54.07 Aligned_cols=111 Identities=13% Similarity=0.004 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHH
Q 007640 416 GQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCK----AGNVDEA 491 (595)
Q Consensus 416 g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A 491 (595)
+++++|+..|++..+.| .++.. |...|...+.+++|.++|++..+.| ++..+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 34566666666666655 22222 4455555556666666666666654 45566666666666 5677777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 007640 492 NVIVAEMEEKRCKPDKVTFTILIIGHCM----KGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 492 ~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 537 (595)
.++|++..+.| +...+..|...|.. .+++++|..+|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777776664 55666666666666 677777777777777665
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.59 E-value=5.8e-05 Score=60.11 Aligned_cols=92 Identities=13% Similarity=0.010 Sum_probs=64.7
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HH
Q 007640 471 KPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPD-------DI 543 (595)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~ 543 (595)
+...+..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|+..+++.++.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 45567777788888888888888888887763 3367778888888888888888888888888743 33 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 007640 544 TVNSLISCLLKGGMPNEAFRIM 565 (595)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~ 565 (595)
.+..+..++...|+.++|.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHH
Confidence 5555556666555555544433
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.53 E-value=0.00023 Score=73.25 Aligned_cols=124 Identities=12% Similarity=0.070 Sum_probs=81.6
Q ss_pred HHHcCCHHHHHHHHHHHhhC---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCC-C-CHhhHHH
Q 007640 412 YCRNGQLNQGLKLCDEMKGK---NLSP----NVYTFTILINALCKENRLNDARRFLKQLKWN-----DLV-P-KPFMYNP 477 (595)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~---~~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~~-p-~~~~~~~ 477 (595)
+...|++++|+.++++.++. -+.+ ...+++.|..+|...|++++|..++++.... |.. | ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777665432 1111 2356777777888888888888877776432 211 2 2456788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 478 VIDGFCKAGNVDEANVIVAEMEEK-----RCK-PD-KVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 478 li~~~~~~g~~~~A~~l~~~m~~~-----g~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
|...|...|++++|..++++..+. |.. |+ ..+.+.+-.++...+.+++|+.++.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888876532 321 22 23445666777788888999988888876
No 199
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.49 E-value=0.00018 Score=70.78 Aligned_cols=148 Identities=12% Similarity=0.017 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHH
Q 007640 156 FKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNA 235 (595)
Q Consensus 156 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 235 (595)
...|..+...+.+.|++++|+..|++..+.. |+... +...++.+++...+. ..+|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 4467788888999999999999999988753 33321 122333344333221 1367788888
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHH-HHhcCCHH
Q 007640 236 LVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPD-IVTYNTLISG-LCRVNEVA 313 (595)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~-~~~~g~~~ 313 (595)
|.+.|++++|+..|++.++..+ .+...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999888764 47788888999999999999999999988754 343 3444444444 23345677
Q ss_pred HHHHHHHHHHhc
Q 007640 314 RGHELLKEVKFK 325 (595)
Q Consensus 314 ~A~~~~~~~~~~ 325 (595)
.+.+.|..+...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 788888887654
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.44 E-value=0.0013 Score=52.58 Aligned_cols=80 Identities=10% Similarity=-0.020 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 455 DARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKML 534 (595)
Q Consensus 455 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 534 (595)
+|...+++..+... .+...+..+...|...|++++|...+++..+.. +.+...|..+..++...|++++|...|++.+
T Consensus 3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777777776653 367788888888888888888988888888763 2356778888888888888888888888887
Q ss_pred HC
Q 007640 535 RI 536 (595)
Q Consensus 535 ~~ 536 (595)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 63
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.42 E-value=0.0015 Score=49.36 Aligned_cols=82 Identities=18% Similarity=0.144 Sum_probs=52.1
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007640 472 PFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISC 551 (595)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 551 (595)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++.++.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4456666666777777777777777766553 2255666667777777777777777777776643 3445556666555
Q ss_pred HHhc
Q 007640 552 LLKG 555 (595)
Q Consensus 552 ~~~~ 555 (595)
+.+.
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5443
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.41 E-value=0.00066 Score=54.44 Aligned_cols=79 Identities=14% Similarity=0.047 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 007640 174 SVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYF 253 (595)
Q Consensus 174 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (595)
+|+..|+...+.. +.+...+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555543 4455555555556666666666666666555433 2344555556666666666666666665554
Q ss_pred H
Q 007640 254 R 254 (595)
Q Consensus 254 ~ 254 (595)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.00011 Score=58.43 Aligned_cols=93 Identities=15% Similarity=0.010 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccC------HHH
Q 007640 155 SFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMS------TFM 228 (595)
Q Consensus 155 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~ 228 (595)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..+++..+... .+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS-TAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS-STTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CccHHHHHHHH
Confidence 34566667777777777777777777776654 44666666677777777777777777777665431 12 344
Q ss_pred HHHHHHHHHHcCCHhHHHHHH
Q 007640 229 YNSLLNALVKQNNADEAVYMF 249 (595)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~ 249 (595)
+..+..++...|+.+.|...+
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHH
Confidence 444555555555554444433
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.26 E-value=0.0015 Score=50.86 Aligned_cols=64 Identities=19% Similarity=0.111 Sum_probs=51.6
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 471 KPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
++..+..+...|...|++++|.+.|++..+... .+...|..+..+|...|++++|+..|++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 567788888888888888888888888887642 2566788888888888888888888888775
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.21 E-value=0.0019 Score=48.77 Aligned_cols=61 Identities=10% Similarity=0.011 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 007640 157 KTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFR 218 (595)
Q Consensus 157 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 218 (595)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...+++..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344445555555555555555555554432 2334444444444444444444444444443
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.14 E-value=0.00094 Score=56.49 Aligned_cols=85 Identities=8% Similarity=-0.108 Sum_probs=42.7
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCH----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007640 449 KENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNV----------DEANVIVAEMEEKRCKPDKVTFTILIIGHC 518 (595)
Q Consensus 449 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~----------~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 518 (595)
+.+.+++|.+.++...+..+. ++..|..+..++...+++ ++|+..|++.++.... +...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 444556666666666555432 555565555555555443 3555555555544211 3444555555554
Q ss_pred hcC-----------CHHHHHHHHHHHHH
Q 007640 519 MKG-----------RMVEAISIFNKMLR 535 (595)
Q Consensus 519 ~~g-----------~~~~A~~~~~~m~~ 535 (595)
..| ++++|++.|+++++
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 432 45555555555444
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.07 E-value=0.00093 Score=56.53 Aligned_cols=86 Identities=9% Similarity=-0.020 Sum_probs=47.3
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH----------HHHHHHHhccCCCCccCHHHHHHHHHHH
Q 007640 167 CEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCD----------AAKGLLSQFRPGEVTMSTFMYNSLLNAL 236 (595)
Q Consensus 167 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~----------~A~~~~~~~~~~~~~~~~~~~~~li~~~ 236 (595)
.+.+++++|++.++...+.. +.+...|..+..++...++++ +|+..|++.++.+ +....+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 34455667777777766655 556666666666666665543 5555555554433 22344455555555
Q ss_pred HHcC-----------CHhHHHHHHHHHHH
Q 007640 237 VKQN-----------NADEAVYMFKEYFR 254 (595)
Q Consensus 237 ~~~g-----------~~~~A~~~~~~m~~ 254 (595)
...| ++++|+..|++.++
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 4442 45555555555444
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.01 E-value=0.0028 Score=49.34 Aligned_cols=67 Identities=16% Similarity=0.041 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007640 434 SPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 434 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
+-+...+..+...|...|++++|...|++..+.++. +...|..+..+|...|++++|.+.|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 346677777888888888888888888888776533 5667788888888888888888888877643
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.90 E-value=0.002 Score=65.08 Aligned_cols=85 Identities=5% Similarity=-0.136 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHhC---CCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHHHHH
Q 007640 451 NRLNDARRFLKQLKWN---DLVPK----PFMYNPVIDGFCKAGNVDEANVIVAEMEEK-----RC-KPD-KVTFTILIIG 516 (595)
Q Consensus 451 g~~~~A~~~~~~~~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~-~p~-~~~~~~li~~ 516 (595)
|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|..++++.++. |. .|+ ..+|+.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 5555555555554321 11111 234555555555555555555555554321 10 111 2234555555
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 007640 517 HCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~ 535 (595)
|...|++++|+.++++.++
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 5555555555555555544
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.85 E-value=0.0047 Score=62.46 Aligned_cols=92 Identities=13% Similarity=0.070 Sum_probs=53.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC---CCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCC-HHH
Q 007640 444 INALCKENRLNDARRFLKQLKWND---LVPK----PFMYNPVIDGFCKAGNVDEANVIVAEMEEK-----R-CKPD-KVT 509 (595)
Q Consensus 444 l~~~~~~g~~~~A~~~~~~~~~~~---~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p~-~~~ 509 (595)
+..+.+.|++++|+.++++..+.. +.|+ ..+++.++.+|...|++++|..+++++++. | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556667777777776665431 1111 345666666677777777777776665532 1 1121 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 510 FTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 510 ~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
++.|...|...|++++|+.+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 56666666667777777777766666
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.61 E-value=0.0042 Score=47.88 Aligned_cols=58 Identities=12% Similarity=0.213 Sum_probs=37.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007640 479 IDGFCKAGNVDEANVIVAEMEEKRCKPDKV-TFTILIIGHCMKGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 479 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (595)
...+.+.|++++|.+.++++.+.. +.+.. .+..+..++...|++++|+..|++.++..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 445556677777777777766552 22445 66666666777777777777777776643
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.58 E-value=0.13 Score=56.61 Aligned_cols=127 Identities=13% Similarity=0.101 Sum_probs=68.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 007640 336 TSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRN 415 (595)
Q Consensus 336 ~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 415 (595)
..++..+.+.|..++|+++.+.-. .-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 556666667777777766542111 1122345567777777665332 3556777777777777
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 007640 416 GQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIV 495 (595)
Q Consensus 416 g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 495 (595)
|+++.|.+.|.++.+ |..+...+...|+.+...++.+.....| -++.....|.+.|++++|.+++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHH
Confidence 777777777776643 2234444444555555554444444333 1233333344455555554443
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.53 E-value=0.02 Score=55.62 Aligned_cols=66 Identities=17% Similarity=0.098 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007640 506 DKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQN 573 (595)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 573 (595)
+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.++++....+
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 44555555444444555555555555555543 4555555555555555555555555555555444
No 214
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.44 E-value=0.097 Score=57.65 Aligned_cols=24 Identities=4% Similarity=0.025 Sum_probs=10.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHH
Q 007640 334 TYTSVISGYCKLGKMDKATGIYNE 357 (595)
Q Consensus 334 ~~~~ll~~~~~~g~~~~A~~l~~~ 357 (595)
.|..+...+.+.|+++.|.+.|..
T Consensus 683 ~W~~la~~al~~~~~~~A~~~y~~ 706 (814)
T 3mkq_A 683 KWRALGDASLQRFNFKLAIEAFTN 706 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444444444444444443
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.43 E-value=0.025 Score=43.12 Aligned_cols=65 Identities=12% Similarity=0.168 Sum_probs=34.7
Q ss_pred CHhhHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007640 471 KPFMYNPVIDGFCKAGN---VDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 471 ~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
++..+..+..++...++ .++|..++++.++.. +-+......+...+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44555555555543333 456666666655542 124445555555555566666666666665553
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.36 E-value=0.0095 Score=45.80 Aligned_cols=66 Identities=15% Similarity=0.003 Sum_probs=56.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCcc
Q 007640 513 LIIGHCMKGRMVEAISIFNKMLRIGCAPDDI-TVNSLISCLLKGGMPNEAFRIMQRASEDQNLQLPSW 579 (595)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 579 (595)
....+...|++++|+..++++++.. +.+.. .+..+..+|...|++++|++.++++++..+.....+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 4556788999999999999999864 55667 899999999999999999999999999887665544
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.35 E-value=0.014 Score=58.79 Aligned_cols=86 Identities=7% Similarity=0.023 Sum_probs=46.5
Q ss_pred cCCHHHHHHHHHHHhhC---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC-CCC-HhhHHHHHH
Q 007640 415 NGQLNQGLKLCDEMKGK---NLSPN----VYTFTILINALCKENRLNDARRFLKQLKWN-----DL-VPK-PFMYNPVID 480 (595)
Q Consensus 415 ~g~~~~A~~l~~~m~~~---~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~-~~~~~~li~ 480 (595)
.|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|+.++++.... |. .|+ ..+|+.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666654331 11111 245566666666666666666666665321 21 111 334666666
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 007640 481 GFCKAGNVDEANVIVAEMEE 500 (595)
Q Consensus 481 ~~~~~g~~~~A~~l~~~m~~ 500 (595)
.|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 66666666666666666554
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.33 E-value=0.021 Score=57.71 Aligned_cols=94 Identities=14% Similarity=0.016 Sum_probs=61.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCC---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC-CCC-H
Q 007640 407 SLIDGYCRNGQLNQGLKLCDEMKGKN---LSPN----VYTFTILINALCKENRLNDARRFLKQLKWN-----DL-VPK-P 472 (595)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~~---~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~-~ 472 (595)
..+..+...|++++|+.++++..+.. +.|+ ..+++.|..+|...|++++|+.+++++... |. .|+ .
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 33455666778888888887775431 1222 346777777788888888888888776432 21 111 4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007640 473 FMYNPVIDGFCKAGNVDEANVIVAEMEE 500 (595)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 500 (595)
.+++.|...|...|++++|..++++..+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4577778888888888888887777653
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.21 E-value=0.22 Score=48.35 Aligned_cols=132 Identities=9% Similarity=-0.042 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHH--HcC---CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---C-Ch----HHHHHHHHhccC-
Q 007640 154 HSFKTYNLVMRSLC--EMG---LHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRA---G-KC----DAAKGLLSQFRP- 219 (595)
Q Consensus 154 ~~~~~y~~li~~~~--~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g-~~----~~A~~~~~~~~~- 219 (595)
.+...|...+++.. ..+ ...+|+.+|++..+.. |-....+..+.-+|... + .. ......++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 45667777766543 333 3468999999999875 44556666555555410 0 00 000001111000
Q ss_pred CCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007640 220 GEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMG 288 (595)
Q Consensus 220 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (595)
...+.+..+|..+...+...|++++|...+++.+..+ |+...|..+...+.-.|++++|.+.|++..
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 0113344444444444444455555555555554443 344444444444445555555555554444
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.12 E-value=0.41 Score=38.54 Aligned_cols=66 Identities=11% Similarity=0.070 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007640 506 DKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 572 (595)
+....+..+..+..+|+-|+-.+++..+.. +.+|++.....+..+|.+.|+..+|.+++.++-++|
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 344455556666666666666666666444 235666666666666666666666666666666654
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.97 E-value=0.06 Score=44.90 Aligned_cols=83 Identities=11% Similarity=0.059 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 007640 452 RLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAG---NVDEANVIVAEMEEKRCKP--DKVTFTILIIGHCMKGRMVEA 526 (595)
Q Consensus 452 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A 526 (595)
....+.+-|.+....+. ++..+...+..++++.+ ++++++.++++..+.. .| +...+-.+..+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 35566666776666664 57778888888888877 5668888888888763 23 344556666777888888888
Q ss_pred HHHHHHHHHC
Q 007640 527 ISIFNKMLRI 536 (595)
Q Consensus 527 ~~~~~~m~~~ 536 (595)
.++++.+++.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8888888874
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.55 E-value=0.094 Score=40.80 Aligned_cols=66 Identities=8% Similarity=0.014 Sum_probs=49.9
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007640 471 KPFMYNPVIDGFCKAGNVDEANVIVAEMEEKR------CKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
++.-+..+...+.+.|+++.|...++...+.- -.+....+..+..++.+.|++++|..+++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45556678888888888888888888876531 1234667788888888888888888888888874
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.08 E-value=1.1 Score=36.19 Aligned_cols=139 Identities=12% Similarity=0.015 Sum_probs=74.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007640 308 RVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAE 387 (595)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 387 (595)
-.|.+++..++..+.... .+..-||-+|--....-+-+-..++++..-. -.|. ...|++....
T Consensus 19 ldG~v~qGveii~k~~~s----sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS----STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCC----CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHHH
Confidence 356666666666666543 2444455555444444444444444444322 1111 1222222222
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007640 388 YMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWND 467 (595)
Q Consensus 388 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 467 (595)
.-+-.+- .+......-++.+...|+-|+-.+++.++... .+|++.....+..+|.+.|+..+|.+++.+..+.|
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 2222111 23345555566667777777777777775443 36667777777777777777777777777777776
Q ss_pred CC
Q 007640 468 LV 469 (595)
Q Consensus 468 ~~ 469 (595)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 54
No 224
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.04 E-value=5.2 Score=43.88 Aligned_cols=152 Identities=9% Similarity=0.032 Sum_probs=65.6
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhCCCCCCHhhH--HHHHHHHHHcCC
Q 007640 412 YCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILIN--ALCKENRLNDARRFLKQLKWNDLVPKPFMY--NPVIDGFCKAGN 487 (595)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~--~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~li~~~~~~g~ 487 (595)
++..|+.+....++..+.+.. +..+...+.. ++...|+.+.+..+.+.+.... .|....- .++.-+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 344556665566665554432 2222222222 3335566666666666665431 1211111 223344555566
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 007640 488 VDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMP-NEAFRIMQ 566 (595)
Q Consensus 488 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~ 566 (595)
.....++++.+.+.. ..++.....+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .+|+..+.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 665555666666531 1122222222223333455444555554444322 23222222333333333332 34555555
Q ss_pred HHH
Q 007640 567 RAS 569 (595)
Q Consensus 567 ~~~ 569 (595)
.+.
T Consensus 654 ~L~ 656 (963)
T 4ady_A 654 PLT 656 (963)
T ss_dssp HHH
T ss_pred HHc
Confidence 554
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.01 E-value=1.1 Score=38.25 Aligned_cols=103 Identities=12% Similarity=0.065 Sum_probs=62.3
Q ss_pred HHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHh
Q 007640 164 RSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNAD 243 (595)
Q Consensus 164 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 243 (595)
....+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3445667777777776654 3556777777777777777777777777654 233444555566665
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007640 244 EAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDM 287 (595)
Q Consensus 244 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 287 (595)
.-.++-+.....|- ++.....+...|+++++.++|.+.
T Consensus 78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 55544444333321 455555566667777777776543
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.98 E-value=0.17 Score=38.39 Aligned_cols=64 Identities=8% Similarity=0.006 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHcCC---chHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccC
Q 007640 155 SFKTYNLVMRSLCEMGL---HDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRP 219 (595)
Q Consensus 155 ~~~~y~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 219 (595)
|+..+..+..++...++ .++|..++++..+.. +-+......+...+.+.|++++|+..|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444444444432222 345555555554443 33444444444444445555555555544444
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.80 E-value=0.31 Score=37.75 Aligned_cols=67 Identities=12% Similarity=0.069 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007640 435 PNVYTFTILINALCKENRLNDARRFLKQLKWND------LVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 435 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
.+..-+..|...+.+.++++.|...++...+.. -.+...++..|..++.+.|+++.|..+++++.+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345566678888888888888888888775531 1234667888888888888888888888888765
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.73 E-value=1.2 Score=38.09 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=46.8
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007640 236 LVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARG 315 (595)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 315 (595)
....|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34455555555555443 2455555555555556666555555554431 22333334444555444
Q ss_pred HHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 007640 316 HELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYN 356 (595)
Q Consensus 316 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~ 356 (595)
.++-+....++ -++.....+.-.|+++++.++|.
T Consensus 80 ~kla~iA~~~g-------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 80 SKMQNIAQTRE-------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHTT-------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHCc-------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 44433333222 12333333334455555555553
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.72 E-value=0.21 Score=41.67 Aligned_cols=80 Identities=13% Similarity=-0.030 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHHcCCHHHHHHH
Q 007640 420 QGLKLCDEMKGKNLSPNVYTFTILINALCKEN---RLNDARRFLKQLKWNDLVP--KPFMYNPVIDGFCKAGNVDEANVI 494 (595)
Q Consensus 420 ~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~l 494 (595)
.+.+-|.+....+ +++..+...+..++++.+ +.++++.+++.+.+.+ .| +...+-.|.-+|.+.|++++|.+.
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 3444444444444 355666666666666665 4556666666666544 12 234445555566677777777777
Q ss_pred HHHHHHC
Q 007640 495 VAEMEEK 501 (595)
Q Consensus 495 ~~~m~~~ 501 (595)
++.+++.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7776665
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.62 E-value=0.2 Score=46.58 Aligned_cols=110 Identities=11% Similarity=0.059 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHH
Q 007640 453 LNDARRFLKQLKWNDLV-PKPFMYNPVIDGFCKA-----GNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCM-KGRMVE 525 (595)
Q Consensus 453 ~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~ 525 (595)
...|...+++..+.+.. .+...|..+...|.+. |+.++|.+.|++.++....-+..++..+...++. .|+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 56777777777765522 1255778888888774 8888888888888876322236667777777777 488888
Q ss_pred HHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007640 526 AISIFNKMLRIGCA--PDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 526 A~~~~~~m~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
|.+.+++.+..... |+.... ..+.-++|..+++++..
T Consensus 259 a~~~L~kAL~a~p~~~P~~~la--------n~~~q~eA~~LL~~~~d 297 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLL--------VILSQKRARWLKAHVQD 297 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHH--------HHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHH--------HHHHHHHHHHHHHHhHH
Confidence 88888888876544 553322 22333566666665543
No 231
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.34 E-value=4.3 Score=44.46 Aligned_cols=297 Identities=11% Similarity=0.016 Sum_probs=144.9
Q ss_pred HHHHHHHHHcCCHhHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHH
Q 007640 230 NSLLNALVKQNNADEA-VYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPD--IVTYNTLISGL 306 (595)
Q Consensus 230 ~~li~~~~~~g~~~~A-~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~~ 306 (595)
.++.+++...|--.+. +.......... .+-...-...--+....|+.++++.+++.....+-..+ ...-..+.-+.
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~-~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGl 421 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA-QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGL 421 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC-CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc-chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHH
Confidence 3566777777733222 22222222221 11222233334467777888888777776654211112 22333344445
Q ss_pred HhcCCHHHHHHHHHHHHhcCC-C-----CCCHhhHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHH--HHHHHH
Q 007640 307 CRVNEVARGHELLKEVKFKSE-F-----SPDVVTYTSVISGYCKLGK-MDKATGIYNEMNSCGIKPSAVTFN--VLIDGF 377 (595)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~~~-~-----~p~~~~~~~ll~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~~~~--~ll~~~ 377 (595)
...|..+++.+++........ . .+.+..-..+.-++.-.|. -+++.+.+..+....- +...... .|...+
T Consensus 422 i~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~ 500 (963)
T 4ady_A 422 IYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCM 500 (963)
T ss_dssp HTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhh
Confidence 556665667776666554321 0 0112223333334433332 2355566666554321 1111111 233334
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHhhCCCCCCHHHHH---HHHHHHHHcCC
Q 007640 378 GKVGNMVSAEYMRERMLSFGYLPDVVTFSSLID--GYCRNGQLNQGLKLCDEMKGKNLSPNVYTFT---ILINALCKENR 452 (595)
Q Consensus 378 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~---~ll~~~~~~g~ 452 (595)
...|+.+....++..+.+.. +......+.- ++...|+.+.+..+.+.+.... .|.. -|. ++.-+|+..|+
T Consensus 501 vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~v-Rygaa~alglAyaGTGn 575 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLL-RYGGAFTIALAYAGTGN 575 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHH-HHHHHHHHHHHTTTSCC
T ss_pred cccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHH-HHHHHHHHHHHhcCCCC
Confidence 56677777777777766542 3233333333 3346677777777777776542 1211 222 23345666777
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 007640 453 LNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRM-VEAISIFN 531 (595)
Q Consensus 453 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~ 531 (595)
.....+++..+.... ..+..-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-|....|.. .+|+.++.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 777666777776542 2233333333334445666666666666655543 33333333344444444443 56666777
Q ss_pred HHHH
Q 007640 532 KMLR 535 (595)
Q Consensus 532 ~m~~ 535 (595)
.+..
T Consensus 654 ~L~~ 657 (963)
T 4ady_A 654 PLTK 657 (963)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 7653
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.90 E-value=0.45 Score=38.08 Aligned_cols=83 Identities=12% Similarity=0.053 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 007640 451 NRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDE---ANVIVAEMEEKRCKP--DKVTFTILIIGHCMKGRMVE 525 (595)
Q Consensus 451 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~l~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~ 525 (595)
..+..+.+-+......|. ++..+-..+..++.+..+... ++.++++..+.+ .| .....-.+..++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 334444444444443332 455555555555655554443 555666555542 12 22233344455566666666
Q ss_pred HHHHHHHHHH
Q 007640 526 AISIFNKMLR 535 (595)
Q Consensus 526 A~~~~~~m~~ 535 (595)
|.++++.+++
T Consensus 93 A~~~~~~lL~ 102 (126)
T 1nzn_A 93 ALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666655
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.53 E-value=0.5 Score=43.99 Aligned_cols=107 Identities=11% Similarity=0.093 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc-CCH
Q 007640 418 LNQGLKLCDEMKGKNLSPN---VYTFTILINALCKE-----NRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKA-GNV 488 (595)
Q Consensus 418 ~~~A~~l~~~m~~~~~~p~---~~~~~~ll~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~ 488 (595)
...|...+++.++.. |+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++....+.++.. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 567777788877763 44 56888898889884 99999999999999877543577888889999885 899
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 489 DEANVIVAEMEEKRCK--PDKVTFTILIIGHCMKGRMVEAISIFNKML 534 (595)
Q Consensus 489 ~~A~~l~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 534 (595)
+++.+.+++.+..... |+....+.+ .-.+|..++.++.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~--------~q~eA~~LL~~~~ 296 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL--------SQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH--------HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH--------HHHHHHHHHHHhH
Confidence 9999999999987665 665444433 3455666665543
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.52 E-value=1.1 Score=37.01 Aligned_cols=51 Identities=12% Similarity=0.063 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007640 486 GNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIG 537 (595)
Q Consensus 486 g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (595)
++.++|.++|+.+++.+-.- ...|.....--.++|+.+.|.+++.+.+..+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 56777777777775542222 5555555555566777777777777777655
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.45 E-value=0.39 Score=39.58 Aligned_cols=103 Identities=9% Similarity=0.036 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHHcCCc------hHHHHHHHHHHHCCCCCCHH----HHHHHHHH---HHhcCChHHHHHHHHhccCC
Q 007640 154 HSFKTYNLVMRSLCEMGLH------DSVQVVFDYMRSDGHLPNSP----MIEFFVSS---CIRAGKCDAAKGLLSQFRPG 220 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~------~~A~~~~~~m~~~~~~~~~~----~~~~li~~---~~~~g~~~~A~~~~~~~~~~ 220 (595)
.|..+|-..+..+-+.|+. ++.+++|++.... ++|+.. .|..+--- +...++.++|.++|+.+...
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5778888888888888988 8888888887773 355421 11111111 12235566666666665433
Q ss_pred CCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC
Q 007640 221 EVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQ 258 (595)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 258 (595)
+-.. ..+|......=.+.|+++.|.+++.+.+..++.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 2222 555555555555666666666666666655543
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.97 E-value=2.3e-05 Score=77.33 Aligned_cols=221 Identities=13% Similarity=0.108 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHH
Q 007640 157 KTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNAL 236 (595)
Q Consensus 157 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 236 (595)
.+|..|..+..+.+++.+|++.|- + .-|+..|..++.+..+.|.+++-.+.+...++.. .++.+=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyI---k---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYI---K---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSC---C---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHH---h---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHH
Confidence 366667777777776666665442 1 2244456666666666666666666665555432 2333344566666
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007640 237 VKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGH 316 (595)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 316 (595)
++.++..+-.+++ ..||..-...+..-|...|.++.|.-+|..+.. |..|...+.+.|++..|.
T Consensus 127 Ak~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 127 AKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp HTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSST
T ss_pred HhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHH
Confidence 6666554432221 124444445555555555555555544443321 122233334444444443
Q ss_pred HHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007640 317 ELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSF 396 (595)
Q Consensus 317 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 396 (595)
+.-+ -..++.+|..+-.+|...+.+.-|.-.--.++- .++ -...++..|-..|-+++.+.+++.-...
T Consensus 191 daAr-------KAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 191 DGAR-------KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTTT-------TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHH-------hcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 3211 123445566666666666655544433322221 111 1122344455555555555555554422
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 007640 397 GYLPDVVTFSSLIDGYCR 414 (595)
Q Consensus 397 g~~p~~~~~~~li~~~~~ 414 (595)
. ......|+-|.-.|++
T Consensus 259 E-rAHmGmFTELaILYsK 275 (624)
T 3lvg_A 259 E-RAHMGMFTELAILYSK 275 (624)
T ss_dssp T-TCCHHHHHHHHHHHHS
T ss_pred C-chhHHHHHHHHHHHHh
Confidence 1 2344455555544444
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.96 E-value=0.95 Score=36.22 Aligned_cols=87 Identities=10% Similarity=0.006 Sum_probs=54.6
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHhccCCCCc-cCHHHHHHHHHHHHHcCCHhH
Q 007640 169 MGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDA---AKGLLSQFRPGEVT-MSTFMYNSLLNALVKQNNADE 244 (595)
Q Consensus 169 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~ 244 (595)
......+.+-|......| .++..+--.+..++++.+.... ++.+++.+.+.+.+ ......-.|.-++.+.|++++
T Consensus 14 ~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 334445555555555545 3666666667777777766655 77777777665411 234444556667777777777
Q ss_pred HHHHHHHHHHcC
Q 007640 245 AVYMFKEYFRLY 256 (595)
Q Consensus 245 A~~~~~~m~~~~ 256 (595)
|.+.++.+++..
T Consensus 93 A~~~~~~lL~~e 104 (126)
T 1nzn_A 93 ALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 777777777754
No 238
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.92 E-value=14 Score=38.77 Aligned_cols=329 Identities=12% Similarity=0.059 Sum_probs=145.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH
Q 007640 194 IEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDT-WTFNILIQGLS 272 (595)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~ 272 (595)
|.....+ .+.|+++.+..+...+...-+. .-..|..|...+ .....++....+++... .|-. ..-+..+..+.
T Consensus 10 ~~~a~~a-~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~---~p~~~~Lr~~~l~~l~ 83 (618)
T 1qsa_A 10 YAQIKQA-WDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDL-MNQPAVTVTNFVRANPT---LPPARTLQSRFVNELA 83 (618)
T ss_dssp HHHHHHH-HHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTG-GGCCHHHHHHHHHHCTT---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCc-ccCCHHHHHHHHHHCCC---ChhHHHHHHHHHHHHH
Confidence 4444443 3568888877777766543221 111333222221 12234444444444211 1111 12234455666
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 007640 273 RIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKAT 352 (595)
Q Consensus 273 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 352 (595)
+.+++...+.++.. .+.+...-.....+....|+..+|....+.+=..+...| ..+..++..+.+.|.....
T Consensus 84 ~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p--~~c~~l~~~~~~~g~lt~~- 155 (618)
T 1qsa_A 84 RREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQP--NACDKLFSVWRASGKQDPL- 155 (618)
T ss_dssp HTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCC--THHHHHHHHHHHTTCSCHH-
T ss_pred hCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHCCCCCHH-
Confidence 77777766664432 133444444556667777887777666666544432222 3344444444444433221
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 007640 353 GIYNEMNSCGIKPSAVTFNVLIDGFGKVGNMVSAEYMRERMLSFGYLPDV-VTFSSLIDGYCRNGQLNQGLKLCDEMKGK 431 (595)
Q Consensus 353 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (595)
..+. -+......|+...|..+...+ .++. .....++..+.. ...+......
T Consensus 156 ---------------~~~~-R~~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~~---p~~~~~~~~~---- 207 (618)
T 1qsa_A 156 ---------------AYLE-RIRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANN---PNTVLTFART---- 207 (618)
T ss_dssp ---------------HHHH-HHHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHC---GGGHHHHHHH----
T ss_pred ---------------HHHH-HHHHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHhC---hHhHHHHHhc----
Confidence 1111 223334445555554444332 1121 112222222221 1222221111
Q ss_pred CCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHH----HHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 007640 432 NLSPNVYT---FTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNP----VIDGFCKAGNVDEANVIVAEMEEKRCK 504 (595)
Q Consensus 432 ~~~p~~~~---~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~----li~~~~~~g~~~~A~~l~~~m~~~g~~ 504 (595)
..++... +...+.-+.+ .+.+.|...+........ .+...... +...+...+...++...+.......
T Consensus 208 -~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~-- 282 (618)
T 1qsa_A 208 -TGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS-- 282 (618)
T ss_dssp -SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--
T ss_pred -cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--
Confidence 1222221 1112222223 366777777766654321 23222222 2222223332445555555544332
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007640 505 PDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 505 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
++.....-.+....+.|+++.|...|+.|.... .......--+..++.+.|+.++|..+|+++.+
T Consensus 283 ~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 283 QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 233333333334446677777777777765421 11233333455566677777777777777654
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.98 E-value=2.1 Score=45.89 Aligned_cols=52 Identities=13% Similarity=0.104 Sum_probs=39.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 517 HCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRAS 569 (595)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 569 (595)
|...|+++-|+++-++.+..- +-+..+|..|..+|...|+++.|+-.++.+-
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 455788888888888887753 5557788888888888888888888877763
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.54 E-value=15 Score=36.74 Aligned_cols=49 Identities=8% Similarity=-0.024 Sum_probs=29.9
Q ss_pred CCHhHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007640 240 NNADEAVYMFKEYFRL-----YSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMG 288 (595)
Q Consensus 240 g~~~~A~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (595)
|+++.|++.+..+.+. +..........++..|...|+++...+.+.-+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls 83 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS 83 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5677777766555432 122344556667777777777777766665554
No 241
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=89.98 E-value=0.05 Score=54.17 Aligned_cols=396 Identities=12% Similarity=0.072 Sum_probs=217.9
Q ss_pred HHHHhhcCCCCchhHhhhhcCCCCchhHHHHHHhc---CCchHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHcCCchHH
Q 007640 99 VCTLLLRSSYLSDTCARYLCEKLSPLNSLEVIKRL---DNPKLGLKFLEFSRVNLSLNHSFKTYNLVMRSLCEMGLHDSV 175 (595)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~a~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A 175 (595)
+.......+...+ +...+-+.-+|+...+|+... +..+.-.++...++... .++..=+.|+-+|++.++..+.
T Consensus 60 LgkAqL~~~~v~e-AIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~---ke~~IDteLi~ayAk~~rL~el 135 (624)
T 3lvg_A 60 LAKAQLQKGMVKE-AIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAEL 135 (624)
T ss_dssp HHHHTTTSSSCTT-TTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC---CSTTTTHHHHHHHHTSCSSSTT
T ss_pred HHHHHHccCchHH-HHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccHHHHHHHHHhhCcHHHH
Confidence 3333334445454 555566666777766776655 55566666666665432 2334455688888888887776
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCC--------------------CccCHHHHHHHHHH
Q 007640 176 QVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGE--------------------VTMSTFMYNSLLNA 235 (595)
Q Consensus 176 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------------------~~~~~~~~~~li~~ 235 (595)
.+++. .||..-...+..-|...|.++.|.-+|..+.... -..++.+|.-+-.+
T Consensus 136 Eefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~A 208 (624)
T 3lvg_A 136 EEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA 208 (624)
T ss_dssp TSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHH
T ss_pred HHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 65543 4666666778888888888888877777664321 12456678888888
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007640 236 LVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARG 315 (595)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 315 (595)
|...+++..|.-.--.++- .+| -...++..|-..|.+++.+.+++.-.... ......|+-|.-.|++- +.++.
T Consensus 209 Cvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKl 281 (624)
T 3lvg_A 209 CVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKM 281 (624)
T ss_dssp HHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHH
T ss_pred HhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHH
Confidence 8888888777655444432 222 23346667778888888888887766221 34566677777666654 34444
Q ss_pred HHHHHHHHhcCCCC------CCHhhHHHHHHHHHhcCChhHHHHHH-------------HHHHHCCCCCCHHHHHH----
Q 007640 316 HELLKEVKFKSEFS------PDVVTYTSVISGYCKLGKMDKATGIY-------------NEMNSCGIKPSAVTFNV---- 372 (595)
Q Consensus 316 ~~~~~~~~~~~~~~------p~~~~~~~ll~~~~~~g~~~~A~~l~-------------~~m~~~g~~p~~~~~~~---- 372 (595)
.+-++..-.+-+++ .....|.-++-.|++-.+++.|.... .+.... ..|...|-.
T Consensus 282 mEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~EiyYKAi~F 359 (624)
T 3lvg_A 282 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQF 359 (624)
T ss_dssp HHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCSHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchHHHHHHHHHH
Confidence 44433322111111 12345777777777777777654321 111110 123333433
Q ss_pred -----------HHHHHHhcCCHHHHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHHcCCHHHHHH--------
Q 007640 373 -----------LIDGFGKVGNMVSAEYMRERMLSF----------GYLPDVVTFSSLIDGYCRNGQLNQGLK-------- 423 (595)
Q Consensus 373 -----------ll~~~~~~g~~~~A~~~~~~m~~~----------g~~p~~~~~~~li~~~~~~g~~~~A~~-------- 423 (595)
|+.++...=|...+.++|++.-.. .-.-+...-.++-+.|....+++.-..
T Consensus 360 YL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNF 439 (624)
T 3lvg_A 360 YLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNF 439 (624)
T ss_dssp HTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCS
T ss_pred HHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccc
Confidence 333333333333334443322110 001134444556667777777665432
Q ss_pred ----HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007640 424 ----LCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEME 499 (595)
Q Consensus 424 ----l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 499 (595)
+-.++.++. -...-.+....|.+.++|+++.++.++ ...|--.|.....+|+.+-|.++++-..
T Consensus 440 D~i~LA~rLEkHe---L~eFRrIAA~LYkkn~rw~qsi~l~Kk---------DklykDAietAa~S~~~elaeeLL~yFv 507 (624)
T 3lvg_A 440 DNISLAQRLEKHE---LIEFRRIAAYLFKGNNRWKQSVELCKK---------DSLYKDAMQYASESKDTELAEELLQWFL 507 (624)
T ss_dssp CTTHHHHHHHTCS---SHHHHHHHHHHHHTTCHHHHHSSCSST---------TCCTTGGGTTTTTCCCTTHHHHHHHHHH
T ss_pred cHHHHHHHHhhCc---hHHHHHHHHHHHHhcccHHHHHHHHHh---------cccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 223333321 223333344456677778877765432 1133334455556677777777777777
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007640 500 EKRCKPDKVTFTILIIGHCMKGRMVEAISI 529 (595)
Q Consensus 500 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 529 (595)
+.| +...|...+-.|...=++|.++++
T Consensus 508 ~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 508 QEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 654 445666666666655566665544
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.93 E-value=4.5 Score=43.38 Aligned_cols=63 Identities=11% Similarity=-0.036 Sum_probs=45.1
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHH
Q 007640 470 PKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKG---------RMVEAISIFNKML 534 (595)
Q Consensus 470 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~m~ 534 (595)
-+..=|..|.....+.+++++|.+.|+..+.. +-+...+.-|+..|.+.+ +.+..+.+.-+++
T Consensus 611 ks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~ 682 (754)
T 4gns_B 611 HSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKI 682 (754)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHH
Confidence 34555777888778888888888888887754 467788888888887766 5666666555554
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.66 E-value=19 Score=41.12 Aligned_cols=131 Identities=12% Similarity=0.062 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHH
Q 007640 262 WTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDI----VTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTS 337 (595)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 337 (595)
.-|..++..+.+.+.++.+.++-....+..-+-+. ..|..+.+.+...|++++|...+-.+.... --......
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~---~r~~cLr~ 976 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP---LKKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS---SCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH---HHHHHHHH
Confidence 34555666666666666665555544432111111 134555566666666666666665554322 12234444
Q ss_pred HHHHHHhc------------CChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 007640 338 VISGYCKL------------GKMDKATGIYNEMNSCG--IKPSAVTFNVLIDGFGKVGNMVSA-EYMRERMLS 395 (595)
Q Consensus 338 ll~~~~~~------------g~~~~A~~l~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~A-~~~~~~m~~ 395 (595)
|+..+|.. |..++..+++....+.. +.....-|..|=.-+...|++..| .-+|+.+.+
T Consensus 977 LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 977 FVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 44444433 33455555554432211 111112334343334556666554 455666544
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.63 E-value=24 Score=35.24 Aligned_cols=50 Identities=10% Similarity=0.138 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHhcC----CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 007640 310 NEVARGHELLKEVKFKS----EFSPDVVTYTSVISGYCKLGKMDKATGIYNEMN 359 (595)
Q Consensus 310 g~~~~A~~~~~~~~~~~----~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 359 (595)
|+++.|++.+..+.+.. ...........++..|.+.|+++...+.+..+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls 83 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS 83 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 56666666665554321 122233445566666667777766666555444
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.13 E-value=6.4 Score=31.62 Aligned_cols=68 Identities=13% Similarity=0.072 Sum_probs=39.5
Q ss_pred CCCCHhhHHHHHHHHHHcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007640 468 LVPKPFMYNPVIDGFCKAGNV---DEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 468 ~~p~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (595)
..|++.+--.+..++.+..+. .+++.+++++.+.+..-....+-.+..|+.+.|++++|.++.+.+++
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 345555655666666666543 35666666666543111234445555666777777777777776665
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.89 E-value=2.7 Score=41.39 Aligned_cols=128 Identities=8% Similarity=-0.004 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHH---HHcCCchHHHHHHHHHHHC--CCC-CCHHHHHHHHHHHHhcCChHHH-HHHHHhccCCCCccCH
Q 007640 154 HSFKTYNLVMRSL---CEMGLHDSVQVVFDYMRSD--GHL-PNSPMIEFFVSSCIRAGKCDAA-KGLLSQFRPGEVTMST 226 (595)
Q Consensus 154 ~~~~~y~~li~~~---~~~g~~~~A~~~~~~m~~~--~~~-~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~~~~~~~~~ 226 (595)
.|...|..++... ...|+.+.|...++++... |-. ++... ..+-.. ..-+++.. .
T Consensus 110 ~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~-----------~~w~~~~r~~l~~~~-------~ 171 (388)
T 2ff4_A 110 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-----------FQFVEPFATALVEDK-------V 171 (388)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-----------STTHHHHHHHHHHHH-------H
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCc-----------hhHHHHHHHHHHHHH-------H
Confidence 3555565555443 2457888888888887762 311 11100 111111 11111111 1
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-----hCCCCCCHHHHH
Q 007640 227 FMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMG-----SFGCSPDIVTYN 300 (595)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~t~~ 300 (595)
.+...++..+...|+.++|+..+..+....+ -+...|..+|.++.+.|+..+|++.|+... +.|+.|...+-.
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 2345567788889999999999988887765 578899999999999999999999988764 358888776544
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.75 E-value=8.8 Score=37.71 Aligned_cols=75 Identities=11% Similarity=0.115 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 007640 474 MYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLR-----IGCAPDDITVNSL 548 (595)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~l 548 (595)
+...++..+...|++++|...+..+.... +.+...|..++.++.+.|+..+|++.|+++.+ .|+.|...+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34456666777788888887777776552 33666778888888888888888888877654 5788877765443
Q ss_pred H
Q 007640 549 I 549 (595)
Q Consensus 549 ~ 549 (595)
-
T Consensus 252 ~ 252 (388)
T 2ff4_A 252 E 252 (388)
T ss_dssp H
T ss_pred H
Confidence 3
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.95 E-value=13 Score=30.31 Aligned_cols=68 Identities=12% Similarity=0.047 Sum_probs=46.5
Q ss_pred CCCHhhHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007640 469 VPKPFMYNPVIDGFCKAGN---VDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 469 ~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
.|+..+--.+..++.+..+ ..+++.+++++.+.+..-.....-.+..++.+.|++++|.++.+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 5667777777777777765 3467778887776532223344455667788888888888888888774
No 249
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.03 E-value=27 Score=33.20 Aligned_cols=84 Identities=8% Similarity=-0.022 Sum_probs=52.9
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007640 468 LVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNS 547 (595)
Q Consensus 468 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 547 (595)
..-|+.....+...|.+.+++.+|...|- .|-.+....|..++.-+...+...+ +|...-.+
T Consensus 132 ~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRa 193 (336)
T 3lpz_A 132 PAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHT--------------APLYCARA 193 (336)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHH
Confidence 34578888899999999999999988772 2334444666555554444333222 22222333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 007640 548 LISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
++ -|.-.++...|..+++...+
T Consensus 194 VL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 194 VL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HH-HHHHhCCHHHHHHHHHHHHH
Confidence 33 45567899999887776664
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.96 E-value=8.1 Score=29.26 Aligned_cols=46 Identities=20% Similarity=0.331 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007640 455 DARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEE 500 (595)
Q Consensus 455 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 500 (595)
+..+-++.+...++.|++.+..+.+++|.+..++.-|.++++-.+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444444555555555555555555555555555554443
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.74 E-value=30 Score=39.44 Aligned_cols=55 Identities=9% Similarity=0.059 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 264 FNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVK 323 (595)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~ 323 (595)
...++..+...+..+-+.++..... -+....-.+..++...|++++|.+.|.+..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 3346666777787777776654432 244444456677888888888888887753
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.46 E-value=4.3 Score=34.09 Aligned_cols=116 Identities=8% Similarity=-0.052 Sum_probs=59.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCC-CCCC-------HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHH
Q 007640 442 ILINALCKENRLNDARRFLKQLKWND-LVPK-------PFMYNPVIDGFCKAGNVDEANVIVAEMEEKR--CKPDKVTFT 511 (595)
Q Consensus 442 ~ll~~~~~~g~~~~A~~~~~~~~~~~-~~p~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~~~~ 511 (595)
.-+..+...|.++.|+-+...+.... ..|+ ..++..+.+++...|++..|...|++.+... +.-+..+..
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 33555666777777777666643321 1122 1245666677777777777777777754321 110111111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007640 512 ILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (595)
.+. ....... ......+...--.+..||.+.|++++|+.+++.+..
T Consensus 105 ~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 105 STG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 110 0000000 011223344545678899999999999999877543
No 253
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.35 E-value=14 Score=27.87 Aligned_cols=78 Identities=13% Similarity=0.039 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 007640 276 EVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIY 355 (595)
Q Consensus 276 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~ 355 (595)
..++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+.+ +.||...|..|.. .+.|..+++...+
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL-----AYPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS-----CCGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 45666666666654432 2222222234456667777776665443 3566666666544 3556666666666
Q ss_pred HHHHHCC
Q 007640 356 NEMNSCG 362 (595)
Q Consensus 356 ~~m~~~g 362 (595)
.++..+|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 6665554
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=82.22 E-value=15 Score=29.46 Aligned_cols=68 Identities=13% Similarity=0.013 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007640 434 SPNVYTFTILINALCKENR---LNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 434 ~p~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
.|+..+-..+..++.+... ..+++.+++.+.+.+..-....+-.|.-++.+.|++++|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4555555555555555544 3355666666655442222344555556666667777777776666654
No 255
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=80.86 E-value=13 Score=27.94 Aligned_cols=78 Identities=12% Similarity=0.028 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 007640 276 EVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIY 355 (595)
Q Consensus 276 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~ 355 (595)
..++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+.+ +.||...|..|.. .+.|..+++...+
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN-----PWPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC-----CCGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 45666666666655432 2222222334456677777777665443 3577777766654 3666667776666
Q ss_pred HHHHHCC
Q 007640 356 NEMNSCG 362 (595)
Q Consensus 356 ~~m~~~g 362 (595)
.++..+|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 6666655
No 256
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.39 E-value=39 Score=31.77 Aligned_cols=83 Identities=12% Similarity=0.036 Sum_probs=51.5
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007640 470 PKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMK---GRMVEAISIFNKMLRIGCAPDDITVN 546 (595)
Q Consensus 470 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~ 546 (595)
.++.....+...|.+.|++.+|...|- .|-.-|...+..++.-+... |...++--++-+
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R-------------- 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR-------------- 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--------------
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHH--------------
Confidence 478888999999999999999887664 22111355565555544443 544443322222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 007640 547 SLISCLLKGGMPNEAFRIMQRASED 571 (595)
Q Consensus 547 ~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (595)
+++ .|.-.|+...|..+++...+.
T Consensus 194 aVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 194 LVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 222 355678888888888876543
No 257
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=79.76 E-value=18 Score=27.44 Aligned_cols=61 Identities=11% Similarity=0.068 Sum_probs=37.9
Q ss_pred hHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007640 207 CDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILI 268 (595)
Q Consensus 207 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 268 (595)
.-+..+-+..+-..++.|++.+..+.+.+|.+.+++..|+++|+.++..-. ....+|..++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~-~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CchhhHHHHH
Confidence 345556666666666677777777777777777777777777776654432 2233455444
No 258
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.76 E-value=13 Score=29.79 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007640 455 DARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 455 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
+..+-++.+...++.|++.+..+.+++|-+..++.-|.++|+-.+.+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34444444455555555555555555555555555555555555443
No 259
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.66 E-value=46 Score=31.58 Aligned_cols=82 Identities=9% Similarity=0.041 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007640 435 PNVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILI 514 (595)
Q Consensus 435 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 514 (595)
-|+.....+...|.+.+++.+|+..|- . +-.+.+..|..++.-+...+...++ |...-..++
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaVL 195 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAVL 195 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHHH
Confidence 367777788888888888888887762 2 3333345665555444443332111 222222222
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 007640 515 IGHCMKGRMVEAISIFNKMLR 535 (595)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~ 535 (595)
-|.-.++...|..+++...+
T Consensus 196 -~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 196 -PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -HHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHhCCHHHHHHHHHHHHH
Confidence 34556778888776666553
No 260
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=77.70 E-value=27 Score=28.40 Aligned_cols=68 Identities=13% Similarity=0.013 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007640 434 SPNVYTFTILINALCKENR---LNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEK 501 (595)
Q Consensus 434 ~p~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 501 (595)
.|+..+-..+..++.+... ..+++.+++.+...+..-.....-.|.-++.+.|++++|.++.+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4555555556666666554 3456666666665443223344455566677777777777777777765
No 261
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=75.24 E-value=12 Score=31.43 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHC-CCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHhcc
Q 007640 159 YNLVMRSLCEMGLHDSVQVVFDYMRSD-GHLPNS-------PMIEFFVSSCIRAGKCDAAKGLLSQFR 218 (595)
Q Consensus 159 y~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~ 218 (595)
+-.=++.+...|.++.|+-+.+.+... +..|+. .++..+..++...|++..|...|++..
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 333456677788888888777775542 112331 355667777778888888888887753
No 262
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=74.88 E-value=65 Score=31.42 Aligned_cols=26 Identities=8% Similarity=-0.084 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHH
Q 007640 158 TYNLVMRSLCEMGLHDSVQVVFDYMR 183 (595)
Q Consensus 158 ~y~~li~~~~~~g~~~~A~~~~~~m~ 183 (595)
+...|...|.+.|+.++..+++....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44556677777777777777766544
No 263
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=72.06 E-value=35 Score=27.41 Aligned_cols=47 Identities=11% Similarity=0.045 Sum_probs=26.6
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 007640 209 AAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRL 255 (595)
Q Consensus 209 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (595)
+..+-++.+...++.|++.+..+.+.+|-+.+++..|+++|+-++..
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34444444545555566666666666666666666666666655443
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=70.65 E-value=71 Score=29.99 Aligned_cols=80 Identities=9% Similarity=0.060 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007640 436 NVYTFTILINALCKENRLNDARRFLKQLKWNDLVPKPFMYNPVIDGFCKA---GNVDEANVIVAEMEEKRCKPDKVTFTI 512 (595)
Q Consensus 436 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~~~~~ 512 (595)
++.....+...|.+.+++.+|+..|-. +-..++..+..++.-+... |...++--++- ..
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~--------------Ra 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFS--------------RL 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH--------------HH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchHHHHHH--------------HH
Confidence 677788888888888888888876641 2111344555444444443 43333222111 11
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 007640 513 LIIGHCMKGRMVEAISIFNKML 534 (595)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~ 534 (595)
++ .|.-.|+...|..+++...
T Consensus 195 VL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 VF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HH-HHHHTTBHHHHHHHHHHHH
T ss_pred HH-HHHHhcCHHHHHHHHHHHH
Confidence 22 2445677777777777654
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.69 E-value=41 Score=33.37 Aligned_cols=98 Identities=8% Similarity=-0.089 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccC---CCCccCHHH--HH
Q 007640 158 TYNLVMRSLCEMGLHDSVQVVFDYMRS--DGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRP---GEVTMSTFM--YN 230 (595)
Q Consensus 158 ~y~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~--~~ 230 (595)
++..+...|.+.|+++.|.+.|.++.. .+...-...+-.+++.+...+++..+...+.++.. .+..++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 667788888899999999999988876 23334456677778888888888888877777632 222222111 01
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHc
Q 007640 231 SLLNALVKQNNADEAVYMFKEYFRL 255 (595)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~ 255 (595)
.-+..+...+++..|-..|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1112223456677776666665443
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=66.31 E-value=42 Score=29.13 Aligned_cols=56 Identities=14% Similarity=0.054 Sum_probs=37.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 007640 485 AGNVDEANVIVAEMEEKRCKP-DKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAP 540 (595)
Q Consensus 485 ~g~~~~A~~l~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 540 (595)
+++..++.++|..|...|+-- -...|......+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344667777777777665543 34456666666777777777777777777766556
No 267
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.94 E-value=38 Score=33.63 Aligned_cols=97 Identities=11% Similarity=-0.060 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHhhHHHH--
Q 007640 404 TFSSLIDGYCRNGQLNQGLKLCDEMKGKN--LSPNVYTFTILINALCKENRLNDARRFLKQLKWND-LVPKPFMYNPV-- 478 (595)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l-- 478 (595)
+...+...|.+.|++++|.+.+.++...- ...-...+..++..+...+++..+...+.++...- -.++....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 55667788888888888888888876542 22234566667777777888888887777764321 11222222211
Q ss_pred --HHHHHHcCCHHHHHHHHHHHHH
Q 007640 479 --IDGFCKAGNVDEANVIVAEMEE 500 (595)
Q Consensus 479 --i~~~~~~g~~~~A~~l~~~m~~ 500 (595)
+..+...+++..|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 2222345677777666666544
No 268
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=63.23 E-value=37 Score=31.01 Aligned_cols=53 Identities=15% Similarity=0.114 Sum_probs=33.5
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 007640 236 LVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGS 289 (595)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 289 (595)
+.+.|++++|+.....-++..+ .|...-..|+..+|-.|+++.|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4456666667666666666554 4666666666777777777777666665543
No 269
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=58.76 E-value=1.4e+02 Score=29.12 Aligned_cols=166 Identities=11% Similarity=0.007 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhccCC----CCccCHHHHHHHHHHHHHc-CCHhHHHHHHHHHHHcCCCCCHHHH---
Q 007640 193 MIEFFVSSCIRAGKCDAAKGLLSQFRPG----EVTMSTFMYNSLLNALVKQ-NNADEAVYMFKEYFRLYSQPDTWTF--- 264 (595)
Q Consensus 193 ~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~--- 264 (595)
....|...|.+.|+.++..+++...... .-.-.......|++.+... +..+.-.++..+..+... .+..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 5677888999999999999999887542 1112234456677777664 344444555555544321 111222
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCCHhhH
Q 007640 265 ---NILIQGLSRIGEVKKAFEFFYDMGSFGCSPD-----IVTYNTLISGLCRVNEVARGHELLKEVKFKSE-FSPDVVTY 335 (595)
Q Consensus 265 ---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~p~~~~~ 335 (595)
.-++..|...|++.+|.+++.++.+.=-..| ...|..-+..|...+++.++...+........ +.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2577888888888888888887764211112 23345556677788888888877776643211 11222221
Q ss_pred H--HH--HHHHH-hcCChhHHHHHHHHHH
Q 007640 336 T--SV--ISGYC-KLGKMDKATGIYNEMN 359 (595)
Q Consensus 336 ~--~l--l~~~~-~~g~~~~A~~l~~~m~ 359 (595)
. .. ...+. ..+++..|...|-+..
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 1 11 22334 5778888877776653
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=53.23 E-value=40 Score=30.81 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=45.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007640 480 DGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRI 536 (595)
Q Consensus 480 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (595)
....+.|++++|++....-++.. +-|...=..++..+|-.|+++.|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34567889999999888888773 336666678889999999999999988888775
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=51.43 E-value=1.2e+02 Score=26.25 Aligned_cols=55 Identities=18% Similarity=0.083 Sum_probs=34.4
Q ss_pred CCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 007640 240 NNADEAVYMFKEYFRLYSQP-DTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSP 294 (595)
Q Consensus 240 g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 294 (595)
+...++.++|..|...|+-. -..-|......+...|++++|.++|+.-.+.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33556677777776666432 34456666666667777777777777666655555
No 272
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=51.13 E-value=63 Score=28.88 Aligned_cols=89 Identities=11% Similarity=0.016 Sum_probs=47.7
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHH--CCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHH
Q 007640 161 LVMRSLCEMGLHDSVQVVFDYMRS--DGHLP----NSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLN 234 (595)
Q Consensus 161 ~li~~~~~~g~~~~A~~~~~~m~~--~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 234 (595)
--++++....++++|++++++..+ .+.++ ........+..-.....-.-+..+.+.+.. ..+.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 367888899999999999988765 12121 111222233333333333333444444422 234444555556
Q ss_pred HHHHcCCHhHHHHHHHHH
Q 007640 235 ALVKQNNADEAVYMFKEY 252 (595)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m 252 (595)
.+.+.|+.++|.++|-+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 666666666666666554
No 273
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=50.05 E-value=93 Score=25.56 Aligned_cols=50 Identities=16% Similarity=0.098 Sum_probs=26.0
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007640 526 AISIFNKMLRIGCAPD-DITVNSLISCLLKGGMPNEAFRIMQRASEDQNLQ 575 (595)
Q Consensus 526 A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 575 (595)
+..+|..|...|+.-. +..|......+...|++++|.++++..++..-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5555555555444333 2334555555555555555555555555554444
No 274
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=48.76 E-value=2.5e+02 Score=29.20 Aligned_cols=254 Identities=10% Similarity=-0.007 Sum_probs=135.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007640 193 MIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLS 272 (595)
Q Consensus 193 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 272 (595)
.-..-+..+.+.+++......+.. .+.+...-.....+....|+..+|....+.+-..|. ........++..+.
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~ 147 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWR 147 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHH
Confidence 335556677778887776665543 244666666677778888888888877777766553 34556777777777
Q ss_pred hcCCHHH--HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHhhHHH-------------
Q 007640 273 RIGEVKK--AFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDVVTYTS------------- 337 (595)
Q Consensus 273 ~~g~~~~--A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~------------- 337 (595)
+.|.+.. ..+-++.+...| +...-..++... ..+.-..+. .+..+... ++++.....
T Consensus 148 ~~g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l-~~~~~~~a~-~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~ 219 (618)
T 1qsa_A 148 ASGKQDPLAYLERIRLAMKAG---NTGLVTVLAGQM-PADYQTIAS-AIISLANN---PNTVLTFARTTGATDFTRQMAA 219 (618)
T ss_dssp HTTCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTC-CGGGHHHHH-HHHHHHHC---GGGHHHHHHHSCCCHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhC-CHHHHHHHH-HHHHHHhC---hHhHHHHHhccCCChhhHHHHH
Confidence 7665432 333333334333 222222222211 111111111 12222221 122221110
Q ss_pred -HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007640 338 -VISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFNV----LIDGFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGY 412 (595)
Q Consensus 338 -ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~----ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 412 (595)
.+.-+.+ .+.+.|...|....+.. ..+...... +...+...+...++...+....... .+.....-.+...
T Consensus 220 ~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~A 295 (618)
T 1qsa_A 220 VAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMA 295 (618)
T ss_dssp HHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHH
T ss_pred HHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHH
Confidence 1112222 36778888887776533 223332222 2223333442445555555554432 3433344444455
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007640 413 CRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENRLNDARRFLKQLKW 465 (595)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 465 (595)
.+.|+++.|...|+.|.... ........-+..++...|+.++|..+|+.+..
T Consensus 296 lr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 56788888888888876542 12344455566677788888888888888764
No 275
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=46.01 E-value=48 Score=28.96 Aligned_cols=19 Identities=16% Similarity=0.118 Sum_probs=9.4
Q ss_pred HHHHHhcCChHHHHHHHHh
Q 007640 198 VSSCIRAGKCDAAKGLLSQ 216 (595)
Q Consensus 198 i~~~~~~g~~~~A~~~~~~ 216 (595)
+...+..|+.+-+..+++.
T Consensus 46 L~~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHc
Confidence 3344455555555555444
No 276
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=45.93 E-value=1.1e+02 Score=27.31 Aligned_cols=89 Identities=13% Similarity=0.050 Sum_probs=42.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC--CCCC----CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007640 443 LINALCKENRLNDARRFLKQLKWN--DLVP----KPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIG 516 (595)
Q Consensus 443 ll~~~~~~g~~~~A~~~~~~~~~~--~~~p----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 516 (595)
-++.+....++++|.+++++..+. +.++ ........+..-.....-.-+..+.+++. . .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHHHH
Confidence 356666677777777777665432 1111 01111222222222222333333444442 2 3445555555666
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 007640 517 HCMKGRMVEAISIFNKML 534 (595)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~ 534 (595)
+.+.|+.++|.++|=+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 666666666666665544
No 277
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=45.28 E-value=1.5e+02 Score=25.57 Aligned_cols=103 Identities=16% Similarity=0.191 Sum_probs=55.7
Q ss_pred HHHHHH---HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007640 478 VIDGFC---KAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGR-----MVEAISIFNKMLRIGCAPDDITVNSLI 549 (595)
Q Consensus 478 li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~g~~p~~~~~~~l~ 549 (595)
+|+++. +-.+.+.|+-++.+|++.| .|....=..++.+.-..|. ...|...++.....|.+--.......+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 95 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADVV 95 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 344443 3458888888888888888 5555555555555555553 334555555556668655555444444
Q ss_pred HHHHh---cCCHHHHHHHHHHHHhcC-CCCCCcccc
Q 007640 550 SCLLK---GGMPNEAFRIMQRASEDQ-NLQLPSWKK 581 (595)
Q Consensus 550 ~~~~~---~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 581 (595)
-.++. ++....|+....+.++.+ ..+.|.-.+
T Consensus 96 iyLA~aPKSNs~y~A~~~A~~~v~~~~~~~VP~hLr 131 (204)
T 2r9g_A 96 VDLCLSPKSNSAYMALDAALADIREGKAGDVPDHLR 131 (204)
T ss_dssp HHHHHSCCCCHHHHHHHHHHHHHHTTCCCCCCGGGS
T ss_pred HHHHcCCccHHHHHHHHHHHHHHHhcCCCCCCcccc
Confidence 44443 334444444444444444 334444333
No 278
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=45.09 E-value=97 Score=23.36 Aligned_cols=51 Identities=8% Similarity=-0.153 Sum_probs=25.1
Q ss_pred HHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC
Q 007640 200 SCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLY 256 (595)
Q Consensus 200 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 256 (595)
.+...|++++|..+.+... .||...|-+|.. .+.|..+.+...+.++...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3445555655555554433 345544444333 24555555555555554443
No 279
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=44.54 E-value=49 Score=29.89 Aligned_cols=9 Identities=0% Similarity=0.006 Sum_probs=3.7
Q ss_pred HHcCCHHHH
Q 007640 483 CKAGNVDEA 491 (595)
Q Consensus 483 ~~~g~~~~A 491 (595)
++.|+.+-+
T Consensus 227 ~~~~~~~~v 235 (285)
T 1wdy_A 227 VEKKHLGLV 235 (285)
T ss_dssp HHTTCHHHH
T ss_pred HHcCCHHHH
Confidence 344444433
No 280
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=43.87 E-value=1e+02 Score=23.28 Aligned_cols=48 Identities=8% Similarity=-0.020 Sum_probs=20.8
Q ss_pred HHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 007640 201 CIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFR 254 (595)
Q Consensus 201 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (595)
+...|++++|..+.+... .||...|-+|.. .+.|..+++...+.++..
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 344455555555444433 344444433332 234444444444444443
No 281
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=43.16 E-value=1.6e+02 Score=25.15 Aligned_cols=17 Identities=6% Similarity=-0.131 Sum_probs=7.7
Q ss_pred CHHHHHHHHHHHHhcCC
Q 007640 190 NSPMIEFFVSSCIRAGK 206 (595)
Q Consensus 190 ~~~~~~~li~~~~~~g~ 206 (595)
+...-...+..+.+.|.
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 44444444444444444
No 282
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=42.49 E-value=1e+02 Score=25.33 Aligned_cols=56 Identities=14% Similarity=0.259 Sum_probs=42.1
Q ss_pred chHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHH
Q 007640 172 HDSVQVVFDYMRSDGHLP-NSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTF 227 (595)
Q Consensus 172 ~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 227 (595)
.+++.++|..|...|+.- -+..|......+-..|++.+|.++|+.-++.+..|-..
T Consensus 81 ~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 81 NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 355888888888876644 44567777778888899999999998888777666543
No 283
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=42.23 E-value=1.5e+02 Score=24.69 Aligned_cols=54 Identities=7% Similarity=-0.028 Sum_probs=35.2
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007640 491 ANVIVAEMEEKRCKP-DKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDIT 544 (595)
Q Consensus 491 A~~l~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 544 (595)
+.++|..|..+|+-- -...|......+...|++.+|.++|+.-++.+-.|-...
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 566777777766543 344556666666777777777777777777666664433
No 284
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=41.68 E-value=1.2e+02 Score=26.40 Aligned_cols=85 Identities=14% Similarity=0.019 Sum_probs=37.6
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH--HHHHHHHHh
Q 007640 233 LNALVKQNNADEAVYMFKEYFRLYSQPDTWT--FNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTY--NTLISGLCR 308 (595)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~li~~~~~ 308 (595)
+...++.|+.+....+++.+.+.+..++... -...+...+..|+.+-+. .+.+.|..++.... .+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR----LLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHH----HHHHcCCCccccCCCCCCHHHHHHH
Confidence 4445566776666666665555443332211 112233344555554333 33334444332211 123333445
Q ss_pred cCCHHHHHHHHHH
Q 007640 309 VNEVARGHELLKE 321 (595)
Q Consensus 309 ~g~~~~A~~~~~~ 321 (595)
.|+.+-+..+++.
T Consensus 89 ~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 89 HRSPTCLRALLDS 101 (241)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHc
Confidence 5666555555444
No 285
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=41.07 E-value=2.5e+02 Score=26.87 Aligned_cols=67 Identities=12% Similarity=0.197 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCCCC
Q 007640 404 TFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENR--LNDARRFLKQLKWNDLVPK 471 (595)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~--~~~A~~~~~~~~~~~~~p~ 471 (595)
....++.-|...|+.++|...++++..-.+ -...+...+..++-+.++ .+...+++..+...++.+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~f-hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcc-hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 356777778888888888888888853221 123344455555554333 3456677777777666543
No 286
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=40.70 E-value=45 Score=30.12 Aligned_cols=51 Identities=16% Similarity=0.038 Sum_probs=23.1
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHh
Q 007640 162 VMRSLCEMGLHDSVQVVFDYMRSDGHLPNSP---MIEFFVSSCIRAGKCDAAKGLLSQ 216 (595)
Q Consensus 162 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~ 216 (595)
.+...++.|+.+....++ +.|..++.. .-...+...+..|+.+-+..+++.
T Consensus 8 ~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61 (285)
T ss_dssp HHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 344555666655444443 333222211 111234444556666655555544
No 287
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=38.82 E-value=2e+02 Score=25.06 Aligned_cols=95 Identities=20% Similarity=0.158 Sum_probs=51.9
Q ss_pred HHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007640 477 PVIDGFCK---AGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGR-----MVEAISIFNKMLRIGCAPDDITVNSL 548 (595)
Q Consensus 477 ~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~g~~p~~~~~~~l 548 (595)
-+|+++.| -.+.+.|+-++.+|++.|..|....=..++.+.-..|. ...|...++.....|.+--.......
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqa 116 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFLSQA 116 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34455443 35788888888888888766665555555655555443 34455556666666755444444333
Q ss_pred HHHHH---hcCCHHHHHHHHHHHHhcC
Q 007640 549 ISCLL---KGGMPNEAFRIMQRASEDQ 572 (595)
Q Consensus 549 ~~~~~---~~g~~~~A~~~~~~~~~~~ 572 (595)
+-.++ |++.. .|+..-.+.++.+
T Consensus 117 viyLA~APKSNs~-~A~~~A~~~v~~~ 142 (213)
T 3ctd_A 117 SLYLAISPKSNST-KSIFKAMEAIKAT 142 (213)
T ss_dssp HHHHHHSCCCCGG-GHHHHHHHHHC--
T ss_pred HHHHHcCCccHHH-HHHHHHHHHHHhc
Confidence 33333 34444 5555444444443
No 288
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=38.60 E-value=1.5e+02 Score=25.48 Aligned_cols=52 Identities=23% Similarity=0.217 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCC
Q 007640 486 GNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGR-----MVEAISIFNKMLRIG 537 (595)
Q Consensus 486 g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~g 537 (595)
.+.+.|+-.+.+|++.|..|....=..++.+.-..|. ...|...++.....|
T Consensus 21 SDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 77 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVG 77 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHC
Confidence 4666666666666666555444444444444433332 233444444444455
No 289
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=38.30 E-value=2.5e+02 Score=26.14 Aligned_cols=100 Identities=8% Similarity=0.150 Sum_probs=58.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007640 475 YNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGR--MVEAISIFNKMLRIGCAPDDITVNSLISCL 552 (595)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 552 (595)
...++.-|...|+.++|.+.++++..-... .......+..++-+.++ .+...+++..+.+.|+-+.......+...+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl 247 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIY 247 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 467888888999999999999998632111 12334444555544433 455778888888777655555444444444
Q ss_pred HhcC----CHHHHHH----HHHHHHhcCCCC
Q 007640 553 LKGG----MPNEAFR----IMQRASEDQNLQ 575 (595)
Q Consensus 553 ~~~g----~~~~A~~----~~~~~~~~~~~~ 575 (595)
.... +...|.+ ++.+++..+..+
T Consensus 248 ~~l~Dl~lDiP~A~~~la~~v~~ai~~g~l~ 278 (307)
T 2zu6_B 248 NEIPDINLDVPHSYSVLERFVEECFQAGIIS 278 (307)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHTSSC
T ss_pred HhccHhhcccccHHHHHHHHHHHHHHCCCCC
Confidence 3322 2233444 445555555544
No 290
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=37.63 E-value=2e+02 Score=24.81 Aligned_cols=37 Identities=14% Similarity=0.337 Sum_probs=20.8
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007640 344 KLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVG 381 (595)
Q Consensus 344 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g 381 (595)
+..+.+.|+-++.+|++.| .|....-..++-+.-..|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 3456667777777777766 554444444444444443
No 291
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=34.47 E-value=1.7e+02 Score=24.26 Aligned_cols=50 Identities=12% Similarity=0.046 Sum_probs=26.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHH
Q 007640 485 AGNVDEANVIVAEMEEKRCKP--DKVTFTILII-G-----HCMKGRMVEAISIFNKML 534 (595)
Q Consensus 485 ~g~~~~A~~l~~~m~~~g~~p--~~~~~~~li~-~-----~~~~g~~~~A~~~~~~m~ 534 (595)
.|++-+|-++|+..-.....+ +...|..||. . ..+.|+..-|..++.+..
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 366666666666655443333 3444555554 1 223566666666555543
No 292
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=34.32 E-value=2.1e+02 Score=24.20 Aligned_cols=153 Identities=13% Similarity=0.063 Sum_probs=84.0
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHH
Q 007640 154 HSFKTYNLVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLL 233 (595)
Q Consensus 154 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 233 (595)
++...-...+..+.+.|.. .+...+..+.. .++...-...+.++.+.+..+....+.+.+ . .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l-~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIKAL-K---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHHHT-T---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHH-c---CCCHHHHHHHH
Confidence 4555555566667776663 44444444444 357777777777887777654443344333 2 34666666677
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 007640 234 NALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTYNTLISGLCRVNEVA 313 (595)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 313 (595)
.++.+.+..+ +...+.++.+ .++...-...+.++.+.|..+ +...+..+.+ .++..+-...+.++.+.+. .
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~ 173 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-E 173 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-h
Confidence 7777777643 3344444443 456666666666666666533 3444444442 2455555555555655554 3
Q ss_pred HHHHHHHHHH
Q 007640 314 RGHELLKEVK 323 (595)
Q Consensus 314 ~A~~~~~~~~ 323 (595)
++...+..+.
T Consensus 174 ~~~~~L~~~l 183 (211)
T 3ltm_A 174 RVRAAMEKLA 183 (211)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 3444444443
No 293
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=34.18 E-value=2e+02 Score=24.69 Aligned_cols=38 Identities=24% Similarity=0.182 Sum_probs=21.9
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007640 344 KLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVG 381 (595)
Q Consensus 344 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g 381 (595)
+..+.+.|+-++.+|++.|-.|....-..++-+.-..|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34667777777777777765555444444444443333
No 294
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=33.70 E-value=3.6e+02 Score=26.62 Aligned_cols=155 Identities=17% Similarity=0.103 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC-C---CCHHHHHHHHHHHHH
Q 007640 382 NMVSAEYMRERMLSF--------GYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNL-S---PNVYTFTILINALCK 449 (595)
Q Consensus 382 ~~~~A~~~~~~m~~~--------g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~---p~~~~~~~ll~~~~~ 449 (595)
..++...+++..... ++..+......++.. ..|+..+++.+++.+..... . ....+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It---------- 233 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLK---------- 233 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECC----------
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccC----------
Confidence 345566666666542 233455666666555 46788888777777653321 0 00011
Q ss_pred cCCHHHHHHHHHHHHhCCC---CCCHhhHHHHHHHHH---HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-
Q 007640 450 ENRLNDARRFLKQLKWNDL---VPKPFMYNPVIDGFC---KAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGR- 522 (595)
Q Consensus 450 ~g~~~~A~~~~~~~~~~~~---~p~~~~~~~li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~- 522 (595)
.+. ++++..... ..+....-.++.++. +.++.+.|+.++.+|.+.|..|....-..++.+.-..|.
T Consensus 234 ---~e~----v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a 306 (447)
T 3pvs_A 234 ---PEL----LTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNA 306 (447)
T ss_dssp ---HHH----HHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGG
T ss_pred ---HHH----HHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCC
Confidence 111 111111110 011122233444443 457999999999999999887776666666666665553
Q ss_pred ----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007640 523 ----MVEAISIFNKMLRIGCAPDDITVNSLISCLLKG 555 (595)
Q Consensus 523 ----~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 555 (595)
..-|...++.....|.+--.......+-.++.+
T Consensus 307 ~p~a~~~~~~~~~~~~~~g~pe~~~~l~~~~~~la~~ 343 (447)
T 3pvs_A 307 DPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACA 343 (447)
T ss_dssp CTHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHS
T ss_pred ChhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHcC
Confidence 444566666666677433333333333333433
No 295
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=33.36 E-value=1.8e+02 Score=24.25 Aligned_cols=15 Identities=13% Similarity=0.198 Sum_probs=8.0
Q ss_pred HhcCChHHHHHHHHh
Q 007640 202 IRAGKCDAAKGLLSQ 216 (595)
Q Consensus 202 ~~~g~~~~A~~~~~~ 216 (595)
+..|+.+....++..
T Consensus 13 ~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 13 ANQRDTKKVKEILQD 27 (201)
T ss_dssp HHTTCHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHc
Confidence 345555555555543
No 296
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=31.74 E-value=2.1e+02 Score=23.43 Aligned_cols=50 Identities=22% Similarity=0.274 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC
Q 007640 383 MVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLS 434 (595)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 434 (595)
.+....+++.+.+.|..-|...-..++....+.| .....+-.++...|+.
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~ 95 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGIS 95 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCC
Confidence 3445566666666666555444455555554433 1234555566666654
No 297
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=31.69 E-value=1.6e+02 Score=21.97 Aligned_cols=56 Identities=11% Similarity=0.102 Sum_probs=29.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHHHHH
Q 007640 491 ANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKML-----RIGCAPDDITVNSL 548 (595)
Q Consensus 491 A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~~l 548 (595)
|.++.++..+.|+.|+..+..-++..|...+- .+.++.++.+ ..|..|+..+.+.+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l--da~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ--NEEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 45556666666777776666666666655443 1333222222 24566666555443
No 298
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.46 E-value=4.2e+02 Score=26.75 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHH
Q 007640 158 TYNLVMRSLCEMGLHDSVQVVFDYM 182 (595)
Q Consensus 158 ~y~~li~~~~~~g~~~~A~~~~~~m 182 (595)
.+|.+++.|...+.++.|..+..+.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcC
Confidence 3444555555555555555555443
No 299
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=29.88 E-value=2.8e+02 Score=24.12 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=23.8
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007640 344 KLGKMDKATGIYNEMNSCGIKPSAVTFNVLIDGFGKVG 381 (595)
Q Consensus 344 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g 381 (595)
+..+.+.|+-++.+|++.|-.|....-..++-+.-..|
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34677777777777777776665555555555544444
No 300
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=29.55 E-value=2.1e+02 Score=25.88 Aligned_cols=114 Identities=14% Similarity=-0.059 Sum_probs=47.2
Q ss_pred HHHHHhcCChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhc
Q 007640 198 VSSCIRAGKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDT---WTFNILIQGLSRI 274 (595)
Q Consensus 198 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~ 274 (595)
+...+..|+.+-+..+++.-...+. .+..-. +.+...+..|+.+-+..+++. |..++. .-+...+...+..
T Consensus 66 L~~A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~-t~L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~ 139 (285)
T 3kea_A 66 LHQAATLEDTKIVKILLFSGLDDSQ-FDDKGN-TALYYAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVML 139 (285)
T ss_dssp HHHHTTSSSCHHHHHHHHTTCCTTC-CCTTSC-CHHHHHHHTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCC-cHHHHHHHcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHc
Confidence 3444456666665555554222111 111111 123344556665544433333 332221 1222344444555
Q ss_pred CCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007640 275 GEVKKAFEFFYDMGSFGCSP-DIVTYNTLISGLCRVNEVARGHELLKE 321 (595)
Q Consensus 275 g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~ 321 (595)
|+.+-+..+ .+.|..+ +...-.+.+...+..|+.+-+.-+++.
T Consensus 140 ~~~~~v~~L----l~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 140 NDVSIVSYF----LSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp TCHHHHHHH----HTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHH----HhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 665433333 3333222 111223344444566666655555544
No 301
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=29.43 E-value=3.2e+02 Score=25.19 Aligned_cols=287 Identities=11% Similarity=-0.005 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH--HHHHHHHH
Q 007640 230 NSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTY--NTLISGLC 307 (595)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~li~~~~ 307 (595)
+..+...++.|+.+.+..+++.=..-....+..-++.|..+..... .++.+.+.+.|..++.... ...+....
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~-----~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~ 100 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSR-----EDIVELLLRHGADPVLRKKNGATPFILAA 100 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCC-----HHHHHHHHHcCCchhhhccCCCchhHHHH
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH------------HHHH
Q 007640 308 RVNEVARGHELLKEVKFKSEFSPDVVTYTSVISGYCKLGKMDKATGIYNEMNSCGIKPSAVTFN------------VLID 375 (595)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~------------~ll~ 375 (595)
..+.......+........ ..|..-++.+..+..... .++.+.+.+.|..++..... +.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~--~~d~~g~t~l~~A~~~~~-----~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~ 173 (337)
T 4g8k_A 101 IAGSVKLLKLFLSKGADVN--ECDFYGFTAFMEAAVYGK-----VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM 173 (337)
T ss_dssp HHTCHHHHHHHHTTTCCTT--CBCTTCCBHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHH
T ss_pred hcccchhhHHhhhccchhh--hhccCCCCHHHHHHHcCc-----HHHHHHHHHcCCCcchhhccccccccccCCCCcHHH
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHH--HHHHHHHHcCCH
Q 007640 376 GFGKVGNMVSAEYMRERMLSFGYLPDVVTFSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFT--ILINALCKENRL 453 (595)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~--~ll~~~~~~g~~ 453 (595)
..+..|+.+-+..++++.-..--..|..-.+.+..+... +.......+.+.+.+.|..++..... +.+...+..|..
T Consensus 174 ~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~ 252 (337)
T 4g8k_A 174 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL 252 (337)
T ss_dssp HHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhh
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007640 454 NDARRFLKQLKWNDLVPKPFMYNPVIDGFCKAGNVDEANVIVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKM 533 (595)
Q Consensus 454 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 533 (595)
+.+..++..-...--..|..-.+.|..+..... .++.+.+++.|..++..+ .+...++.|+.+ +.+.+
T Consensus 253 ~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~-----~~iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~L 320 (337)
T 4g8k_A 253 GLVQRLLEQEHIEINDTDSDGKTALLLAVELKL-----KKIAELLCKRGASTDCGD---LVMTARRNYDHS----LVKVL 320 (337)
T ss_dssp HHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTC-----HHHHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHH
T ss_pred HHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHH
Q ss_pred HHCCCCCC
Q 007640 534 LRIGCAPD 541 (595)
Q Consensus 534 ~~~g~~p~ 541 (595)
++.|-.||
T Consensus 321 l~~GA~~d 328 (337)
T 4g8k_A 321 LSHGAKED 328 (337)
T ss_dssp HHTTCCC-
T ss_pred HHCcCCCC
No 302
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.39 E-value=2e+02 Score=23.07 Aligned_cols=36 Identities=11% Similarity=0.003 Sum_probs=14.1
Q ss_pred CChHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcC
Q 007640 205 GKCDAAKGLLSQFRPGEVTMSTFMYNSLLNALVKQN 240 (595)
Q Consensus 205 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 240 (595)
+..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 35 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 35 MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 333344444444443333333333333333333333
No 303
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=27.46 E-value=1.6e+02 Score=25.85 Aligned_cols=56 Identities=11% Similarity=0.013 Sum_probs=44.4
Q ss_pred chHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhccCCCCccCHH
Q 007640 172 HDSVQVVFDYMRSDGHLP-NSPMIEFFVSSCIRAGKCDAAKGLLSQFRPGEVTMSTF 227 (595)
Q Consensus 172 ~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 227 (595)
.+++.++|..|...|+.- -+..|......+-..|++.+|..+|+.-++.+..|-..
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 186 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLR 186 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 368889999999977654 44567788888889999999999999988877666543
No 304
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=27.45 E-value=2.5e+02 Score=22.88 Aligned_cols=64 Identities=13% Similarity=0.192 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCC
Q 007640 405 FSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENR--LNDARRFLKQLKWNDLV 469 (595)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~--~~~A~~~~~~~~~~~~~ 469 (595)
...++.-|...|+.++|...++++.... .....+...+..++-+.++ .+.+..++..+...++.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3455666666666666666666663211 1112333334444443222 34455555555555544
No 305
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=27.33 E-value=2.5e+02 Score=22.86 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=14.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 300 NTLISGLCRVNEVARGHELLKEVK 323 (595)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~ 323 (595)
..++.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 345555666666666666666654
No 306
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=26.67 E-value=3.2e+02 Score=25.80 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=13.9
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHH
Q 007640 230 NSLLNALVKQNNADEAVYMFKEY 252 (595)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m 252 (595)
..++.-|...|+.++|...++++
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Confidence 45556666666666666666555
No 307
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.49 E-value=5.7e+02 Score=28.18 Aligned_cols=108 Identities=14% Similarity=0.067 Sum_probs=66.3
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-----------------
Q 007640 232 LLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSP----------------- 294 (595)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----------------- 294 (595)
++..+...|..+-|.++. .. .+.+...--.+.++|...|++++|.+.|++.-. |+..
T Consensus 816 l~~~L~~~~~~~~a~eL~----~~-~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----GW-LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----GG-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHH----hh-cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 556666677766554432 22 223444444566777788888888888876531 2211
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH----hhHHHHHHHHHhcC
Q 007640 295 ------DIVTYNTLISGLCRVNEVARGHELLKEVKFKSEFSPDV----VTYTSVISGYCKLG 346 (595)
Q Consensus 295 ------~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~g 346 (595)
...-|..++..+-+.+.++.+.++-+....... ..|. ..|+.+..+.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~-~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-SCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc-cCCccchHHHHHHHHHHHhhCC
Confidence 112578888999999999999888877765331 1222 35677777766554
No 308
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=26.24 E-value=4.3e+02 Score=25.17 Aligned_cols=26 Identities=15% Similarity=0.246 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHH
Q 007640 158 TYNLVMRSLCEMGLHDSVQVVFDYMR 183 (595)
Q Consensus 158 ~y~~li~~~~~~g~~~~A~~~~~~m~ 183 (595)
....+|.-|...++.++|...++++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 45566677777777877777777654
No 309
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=26.20 E-value=52 Score=22.04 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007640 243 DEAVYMFKEYFRLYSQPDTWTFNILIQGL 271 (595)
Q Consensus 243 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 271 (595)
++|.+.|.+|++..-.+...+|.-.|+..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 56666666666655445566666666666
No 310
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=25.79 E-value=4.9e+02 Score=25.64 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=13.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC
Q 007640 380 VGNMVSAEYMRERMLSFGYLPD 401 (595)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~ 401 (595)
.++.+.|..++.+|.+.|..|.
T Consensus 268 gsd~daAl~~la~ml~~Gedp~ 289 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPL 289 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 3566666666666666664444
No 311
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.74 E-value=5.3e+02 Score=26.04 Aligned_cols=64 Identities=17% Similarity=0.163 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhccCCCC-ccCH--HHH-HHHHHHHHHcCCHhHHHHHHHHHHHc
Q 007640 192 PMIEFFVSSCIRAGKCDAAKGLLSQFRPGEV-TMST--FMY-NSLLNALVKQNNADEAVYMFKEYFRL 255 (595)
Q Consensus 192 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~~~-~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (595)
..++.+++.|...+.++.|..+..+..--.. ..+. ..| -.+...+.-.+++.+|.+.+....+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4567777777777777777777777642100 1111 122 23455566677777777777766654
No 312
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=25.46 E-value=3.2e+02 Score=23.40 Aligned_cols=53 Identities=8% Similarity=0.012 Sum_probs=26.7
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHH
Q 007640 163 MRSLCEMGLHDSVQVVFDYMRSDGHLPNSPM--IEFFVSSCIRAGKCDAAKGLLS 215 (595)
Q Consensus 163 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~ 215 (595)
+...++.|+.+.+..+++.+.+.|..++... -...+...+..|+.+-+..+++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 67 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH
Confidence 4455667777777667666555543332210 1122333445566655554444
No 313
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=25.41 E-value=4.1e+02 Score=24.65 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=14.2
Q ss_pred HHHHHHHHHcCCchHHHHHHHHH
Q 007640 160 NLVMRSLCEMGLHDSVQVVFDYM 182 (595)
Q Consensus 160 ~~li~~~~~~g~~~~A~~~~~~m 182 (595)
..+|.-|...|+.++|...++++
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el 29 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDL 29 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 44566666666666666666654
No 314
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=25.21 E-value=1.2e+02 Score=26.66 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=8.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 007640 477 PVIDGFCKAGNVDEANVIVAEME 499 (595)
Q Consensus 477 ~li~~~~~~g~~~~A~~l~~~m~ 499 (595)
.....+...|++.+|.++|+.-+
T Consensus 155 ~wA~~lE~~g~~~~A~~Vy~~Gi 177 (223)
T 4aez_C 155 EYANYFESRGLFQKADEVYQKGK 177 (223)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333333333333333333
No 315
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.36 E-value=1.1e+02 Score=25.76 Aligned_cols=82 Identities=9% Similarity=-0.033 Sum_probs=34.3
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH--HHHHHHHHhcCCH
Q 007640 235 ALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPDIVTY--NTLISGLCRVNEV 312 (595)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~li~~~~~~g~~ 312 (595)
..+..|+.+....++..-...--..|..-++. +...+..|+.+-+..+ .+.|..++.... .+.+...+..|+.
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~~L----l~~g~~~~~~~~~g~t~l~~A~~~~~~ 85 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNTP-LNIAVHNNDIEIAKAL----IDRGADINLQNSISDSPYLYAGAQGRT 85 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCH-HHHHHHHTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHH----HHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 34566777666655543210000112222222 3334455665443333 334544432211 1223334455666
Q ss_pred HHHHHHHHH
Q 007640 313 ARGHELLKE 321 (595)
Q Consensus 313 ~~A~~~~~~ 321 (595)
+-+..+++.
T Consensus 86 ~~~~~Ll~~ 94 (201)
T 3hra_A 86 EILAYMLKH 94 (201)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 555555433
No 316
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=23.84 E-value=4e+02 Score=24.00 Aligned_cols=48 Identities=13% Similarity=0.080 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHH---CCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHh
Q 007640 523 MVEAISIFNKMLR---IGCAPDDITVNSLISC-----LLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 523 ~~~A~~~~~~m~~---~g~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~ 570 (595)
.+.|.+.|+.+.+ ..++|+..+...|+-- |--.+++++|.++-+.+.+
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666666543 3467776665554432 3457999999888766654
No 317
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=23.66 E-value=2.7e+02 Score=21.89 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=14.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 007640 300 NTLISGLCRVNEVARGHELLKEVK 323 (595)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~ 323 (595)
..++.-|...|+.++|.+.++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 345555666666666666666654
No 318
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=23.56 E-value=4.9e+02 Score=24.84 Aligned_cols=26 Identities=15% Similarity=0.051 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHH
Q 007640 158 TYNLVMRSLCEMGLHDSVQVVFDYMR 183 (595)
Q Consensus 158 ~y~~li~~~~~~g~~~~A~~~~~~m~ 183 (595)
....+|.-|...|+.++|...++++.
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 34455666666666666666666653
No 319
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=23.04 E-value=1.6e+02 Score=23.21 Aligned_cols=47 Identities=17% Similarity=0.098 Sum_probs=34.8
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 007640 161 LVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKC 207 (595)
Q Consensus 161 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 207 (595)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 45666666777788888888888876666777777777777777654
No 320
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=22.56 E-value=1.7e+02 Score=19.94 Aligned_cols=47 Identities=15% Similarity=0.063 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007640 228 MYNSLLNALVKQNNADEAVYMFKEYFRLYSQPDTWTFNILIQGLSRIG 275 (595)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 275 (595)
.++-+++.+++..-.++++..+++.++.|. .+..+|---++.+++..
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~LaReQ 50 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELARQQ 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHH
Confidence 455666667776777777777777777764 56666666666655543
No 321
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=22.45 E-value=2.8e+02 Score=21.74 Aligned_cols=64 Identities=13% Similarity=0.192 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCC
Q 007640 405 FSSLIDGYCRNGQLNQGLKLCDEMKGKNLSPNVYTFTILINALCKENR--LNDARRFLKQLKWNDLV 469 (595)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~g~--~~~A~~~~~~~~~~~~~ 469 (595)
...++.-|...|+.++|...++++.... .....+...+..++-+.++ .+.+..++..+...++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3445566666666666666666664211 1112233334444443322 34455555555555544
No 322
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=22.43 E-value=1.8e+02 Score=23.39 Aligned_cols=6 Identities=17% Similarity=0.529 Sum_probs=2.1
Q ss_pred HHHHHh
Q 007640 211 KGLLSQ 216 (595)
Q Consensus 211 ~~~~~~ 216 (595)
.++++.
T Consensus 37 ~ei~~~ 42 (145)
T 3eyy_A 37 DDILGE 42 (145)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 323
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=21.76 E-value=3.5e+02 Score=22.46 Aligned_cols=52 Identities=12% Similarity=-0.034 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 007640 244 EAVYMFKEYFRLYSQP-DTWTFNILIQGLSRIGEVKKAFEFFYDMGSFGCSPD 295 (595)
Q Consensus 244 ~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 295 (595)
++.++|..|...|+-. -..-|......+-..|++.+|.++|+.-.+.+-.|-
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 3555666666665432 344556666666666666666666666666555553
No 324
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.57 E-value=3.5e+02 Score=22.38 Aligned_cols=51 Identities=6% Similarity=0.035 Sum_probs=25.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHh
Q 007640 520 KGRMVEAISIFNKMLRIGCAP--DDITVNSLIS-C-----LLKGGMPNEAFRIMQRASE 570 (595)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~ 570 (595)
.|++-+|.++|+..-...-.+ +...|..||. . ..+.|+..-|..+++++..
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356666666665555433233 3334444444 1 1234566666666555554
No 325
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.18 E-value=1.4e+02 Score=23.86 Aligned_cols=47 Identities=21% Similarity=0.199 Sum_probs=34.5
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 007640 161 LVMRSLCEMGLHDSVQVVFDYMRSDGHLPNSPMIEFFVSSCIRAGKC 207 (595)
Q Consensus 161 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 207 (595)
.+++.+...+..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 45666666667778888888888877667777777777777777754
No 326
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.24 E-value=1.9e+02 Score=23.87 Aligned_cols=26 Identities=8% Similarity=0.172 Sum_probs=12.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC
Q 007640 336 TSVISGYCKLGKMDKATGIYNEMNSC 361 (595)
Q Consensus 336 ~~ll~~~~~~g~~~~A~~l~~~m~~~ 361 (595)
..++..+...+..-.|.++++.+.+.
T Consensus 36 ~~IL~~L~~~~~h~sA~eI~~~l~~~ 61 (162)
T 4ets_A 36 EVLLKTLYHSDTHYTPESLYMEIKQA 61 (162)
T ss_dssp HHHHHHHHSCCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhh
Confidence 33344444444444555555555443
Done!