Query 007641
Match_columns 595
No_of_seqs 444 out of 3232
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 13:22:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007641.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007641hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 4.2E-79 9.1E-84 655.8 17.8 315 275-595 1-319 (506)
2 COG2226 UbiE Methylase involve 99.8 1.3E-17 2.8E-22 168.6 15.1 151 372-527 38-227 (238)
3 PF01209 Ubie_methyltran: ubiE 99.7 7.8E-18 1.7E-22 170.0 10.5 139 388-527 46-223 (233)
4 PLN02233 ubiquinone biosynthes 99.6 5.8E-15 1.3E-19 151.3 18.5 138 388-526 72-250 (261)
5 TIGR02752 MenG_heptapren 2-hep 99.6 9.4E-14 2E-18 138.3 19.6 145 388-534 44-228 (231)
6 KOG1540 Ubiquinone biosynthesi 99.6 3E-14 6.5E-19 143.5 15.1 144 388-535 99-291 (296)
7 PTZ00098 phosphoethanolamine N 99.6 5.1E-14 1.1E-18 144.5 16.8 165 346-524 21-202 (263)
8 PLN02396 hexaprenyldihydroxybe 99.6 2.8E-14 6.1E-19 150.6 15.0 134 389-525 131-290 (322)
9 PLN02244 tocopherol O-methyltr 99.6 5.7E-14 1.2E-18 149.2 17.5 135 388-524 117-278 (340)
10 PF13489 Methyltransf_23: Meth 99.6 1.4E-14 3.1E-19 134.4 10.2 135 373-521 9-160 (161)
11 PF08241 Methyltransf_11: Meth 99.6 1.5E-14 3.2E-19 122.1 9.0 89 394-489 1-95 (95)
12 COG2227 UbiG 2-polyprenyl-3-me 99.5 2E-14 4.3E-19 144.2 10.3 181 334-525 11-216 (243)
13 PRK10258 biotin biosynthesis p 99.5 1.1E-12 2.4E-17 132.6 17.3 98 389-492 42-141 (251)
14 PRK11873 arsM arsenite S-adeno 99.5 7.7E-13 1.7E-17 135.5 15.7 133 389-523 77-229 (272)
15 PRK05785 hypothetical protein; 99.5 1.1E-12 2.4E-17 131.8 15.6 128 390-527 52-214 (226)
16 PRK00107 gidB 16S rRNA methylt 99.5 2.4E-12 5.1E-17 126.2 17.5 123 389-527 45-172 (187)
17 PRK14103 trans-aconitate 2-met 99.5 1E-12 2.2E-17 133.6 15.2 95 389-492 29-127 (255)
18 PLN02336 phosphoethanolamine N 99.5 2.2E-12 4.7E-17 142.3 18.8 134 389-524 266-414 (475)
19 PRK15068 tRNA mo(5)U34 methylt 99.4 1.7E-12 3.8E-17 137.1 16.4 144 375-524 112-274 (322)
20 PF12847 Methyltransf_18: Meth 99.4 5.9E-13 1.3E-17 117.1 10.5 102 389-491 1-111 (112)
21 PRK11036 putative S-adenosyl-L 99.4 1.2E-12 2.6E-17 133.1 13.6 132 389-523 44-206 (255)
22 PRK11207 tellurite resistance 99.4 2.7E-12 5.8E-17 126.2 14.5 98 389-490 30-133 (197)
23 PLN02490 MPBQ/MSBQ methyltrans 99.4 5.5E-12 1.2E-16 134.1 17.4 134 388-525 112-257 (340)
24 TIGR00452 methyltransferase, p 99.4 5.1E-12 1.1E-16 133.1 16.7 131 389-523 121-272 (314)
25 PRK08317 hypothetical protein; 99.4 1.1E-11 2.5E-16 122.0 17.0 148 372-525 6-177 (241)
26 TIGR00740 methyltransferase, p 99.4 8.6E-12 1.9E-16 125.5 15.4 100 389-492 53-162 (239)
27 TIGR00477 tehB tellurite resis 99.4 3.9E-12 8.4E-17 124.9 12.1 97 390-490 31-132 (195)
28 PF13847 Methyltransf_31: Meth 99.4 3.5E-12 7.6E-17 119.5 11.2 102 389-493 3-112 (152)
29 KOG4300 Predicted methyltransf 99.4 1.5E-12 3.3E-17 127.7 8.9 126 367-493 54-184 (252)
30 PRK11088 rrmA 23S rRNA methylt 99.4 2.3E-12 4.9E-17 132.6 10.7 92 389-493 85-183 (272)
31 PRK15451 tRNA cmo(5)U34 methyl 99.4 9E-12 2E-16 126.5 14.2 100 389-492 56-165 (247)
32 PF02353 CMAS: Mycolic acid cy 99.3 9.5E-12 2.1E-16 128.7 13.8 157 359-525 36-218 (273)
33 PRK00216 ubiE ubiquinone/menaq 99.3 5.7E-11 1.2E-15 117.6 18.3 148 389-537 51-238 (239)
34 PRK01683 trans-aconitate 2-met 99.3 1.8E-11 3.9E-16 124.2 14.4 97 389-492 31-131 (258)
35 COG2230 Cfa Cyclopropane fatty 99.3 3.3E-11 7.3E-16 124.5 15.5 156 359-524 46-223 (283)
36 PF08003 Methyltransf_9: Prote 99.3 1.6E-11 3.4E-16 127.5 13.1 140 375-523 105-266 (315)
37 PRK00121 trmB tRNA (guanine-N( 99.3 1.9E-11 4.1E-16 120.7 12.8 122 389-520 40-177 (202)
38 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 1.1E-10 2.3E-15 114.5 17.8 100 389-491 39-143 (223)
39 TIGR02072 BioC biotin biosynth 99.3 2.6E-11 5.7E-16 119.7 13.3 128 390-524 35-176 (240)
40 TIGR00138 gidB 16S rRNA methyl 99.3 9.2E-11 2E-15 114.2 16.5 126 389-527 42-172 (181)
41 TIGR02021 BchM-ChlM magnesium 99.3 1.9E-11 4.1E-16 121.4 11.9 175 345-525 13-207 (219)
42 smart00828 PKS_MT Methyltransf 99.3 3.3E-11 7.1E-16 119.5 13.3 131 391-525 1-145 (224)
43 TIGR03534 RF_mod_PrmC protein- 99.3 1.4E-10 3E-15 116.4 17.3 139 371-525 74-242 (251)
44 PF13649 Methyltransf_25: Meth 99.3 4.3E-12 9.3E-17 110.9 5.7 91 393-485 1-101 (101)
45 TIGR00537 hemK_rel_arch HemK-r 99.3 2.1E-10 4.5E-15 110.6 17.5 125 390-525 20-166 (179)
46 PRK04266 fibrillarin; Provisio 99.3 2.8E-10 6E-15 114.8 18.3 133 388-526 71-212 (226)
47 PF08242 Methyltransf_12: Meth 99.3 2.3E-12 4.9E-17 111.8 2.7 92 394-487 1-99 (99)
48 PRK12335 tellurite resistance 99.3 2.9E-11 6.3E-16 125.5 11.4 97 390-490 121-222 (287)
49 PRK00517 prmA ribosomal protei 99.2 2.3E-10 5E-15 116.5 17.3 128 389-537 119-249 (250)
50 TIGR00091 tRNA (guanine-N(7)-) 99.2 6.9E-11 1.5E-15 115.8 13.0 124 389-522 16-156 (194)
51 PF07021 MetW: Methionine bios 99.2 7.5E-11 1.6E-15 115.5 12.4 127 389-524 13-167 (193)
52 PLN02336 phosphoethanolamine N 99.2 3.1E-11 6.7E-16 133.2 10.7 130 389-522 37-180 (475)
53 PRK08287 cobalt-precorrin-6Y C 99.2 5.8E-10 1.2E-14 108.2 18.3 120 389-523 31-155 (187)
54 PRK14968 putative methyltransf 99.2 4.5E-10 9.8E-15 107.5 17.1 127 389-525 23-174 (188)
55 KOG1270 Methyltransferases [Co 99.2 1.1E-11 2.3E-16 125.8 6.0 145 390-539 90-265 (282)
56 PRK05134 bifunctional 3-demeth 99.2 2.2E-10 4.8E-15 114.4 15.1 145 373-523 36-204 (233)
57 PF03141 Methyltransf_29: Puta 99.2 8.4E-11 1.8E-15 128.5 12.6 208 287-525 259-492 (506)
58 PF03848 TehB: Tellurite resis 99.2 1.2E-10 2.6E-15 114.6 12.5 106 377-490 22-132 (192)
59 PRK14967 putative methyltransf 99.2 6.8E-10 1.5E-14 111.0 17.9 123 389-521 36-181 (223)
60 TIGR02469 CbiT precorrin-6Y C5 99.2 3.2E-10 6.9E-15 100.8 13.4 98 389-491 19-122 (124)
61 PRK15001 SAM-dependent 23S rib 99.2 1.4E-10 2.9E-15 125.1 12.6 113 374-491 217-340 (378)
62 TIGR00406 prmA ribosomal prote 99.2 3.4E-10 7.3E-15 117.8 14.9 121 389-523 159-282 (288)
63 TIGR01177 conserved hypothetic 99.2 1.6E-10 3.5E-15 122.2 12.7 125 388-525 181-316 (329)
64 PF05175 MTS: Methyltransferas 99.2 4.8E-11 1E-15 114.6 7.7 101 389-492 31-141 (170)
65 PF06325 PrmA: Ribosomal prote 99.2 3.2E-10 7E-15 118.5 14.5 155 363-537 137-294 (295)
66 TIGR01983 UbiG ubiquinone bios 99.2 3.8E-10 8.2E-15 111.6 14.0 134 389-524 45-203 (224)
67 PRK06922 hypothetical protein; 99.2 1E-10 2.2E-15 132.3 10.9 102 389-492 418-538 (677)
68 KOG1541 Predicted protein carb 99.2 1.1E-10 2.5E-15 115.7 9.9 118 389-518 50-181 (270)
69 PRK06202 hypothetical protein; 99.2 4.3E-10 9.3E-15 112.7 14.0 129 389-525 60-223 (232)
70 PRK09328 N5-glutamine S-adenos 99.2 2.1E-09 4.5E-14 109.8 19.2 127 389-525 108-263 (275)
71 PF05401 NodS: Nodulation prot 99.2 9.8E-10 2.1E-14 108.0 15.8 118 388-516 42-172 (201)
72 TIGR03587 Pse_Me-ase pseudamin 99.2 2.7E-10 5.7E-15 113.1 12.0 93 389-491 43-142 (204)
73 COG2264 PrmA Ribosomal protein 99.1 7.1E-10 1.5E-14 115.6 15.3 133 389-536 162-298 (300)
74 smart00138 MeTrc Methyltransfe 99.1 2.3E-10 5E-15 117.7 11.5 101 389-491 99-242 (264)
75 TIGR03840 TMPT_Se_Te thiopurin 99.1 3.1E-10 6.7E-15 113.4 12.0 100 389-490 34-151 (213)
76 PLN02585 magnesium protoporphy 99.1 9.8E-10 2.1E-14 116.0 15.4 128 389-522 144-297 (315)
77 PTZ00146 fibrillarin; Provisio 99.1 2.4E-09 5.2E-14 111.5 17.7 152 366-525 110-272 (293)
78 PRK11188 rrmJ 23S rRNA methylt 99.1 4.2E-10 9.2E-15 112.0 11.3 91 389-491 51-165 (209)
79 COG2813 RsmC 16S RNA G1207 met 99.1 3.2E-10 6.9E-15 117.8 10.5 129 357-492 129-267 (300)
80 PRK09489 rsmC 16S ribosomal RN 99.1 3.7E-10 8E-15 120.4 11.3 111 374-492 185-304 (342)
81 PRK11705 cyclopropane fatty ac 99.1 4E-10 8.7E-15 121.9 11.8 107 373-491 155-267 (383)
82 TIGR02716 C20_methyl_CrtF C-20 99.1 1.9E-09 4.1E-14 112.6 16.4 128 388-521 148-303 (306)
83 COG4123 Predicted O-methyltran 99.1 1E-09 2.3E-14 111.7 13.9 125 389-522 44-192 (248)
84 PRK14966 unknown domain/N5-glu 99.1 4.9E-09 1.1E-13 113.9 19.5 136 390-535 252-416 (423)
85 TIGR02081 metW methionine bios 99.1 1.6E-09 3.4E-14 105.9 14.1 124 389-523 13-166 (194)
86 PRK14121 tRNA (guanine-N(7)-)- 99.1 1.7E-09 3.7E-14 116.7 15.0 101 389-491 122-235 (390)
87 KOG1271 Methyltransferases [Ge 99.1 1.6E-09 3.4E-14 105.0 12.8 143 371-523 49-204 (227)
88 PF13659 Methyltransf_26: Meth 99.1 2.3E-10 4.9E-15 101.6 6.6 103 390-492 1-116 (117)
89 PRK07580 Mg-protoporphyrin IX 99.1 1.4E-09 3E-14 107.9 12.6 130 389-524 63-214 (230)
90 PRK13944 protein-L-isoaspartat 99.1 1.4E-09 3.1E-14 107.5 12.6 107 373-491 60-173 (205)
91 PRK00377 cbiT cobalt-precorrin 99.1 3.3E-09 7.2E-14 104.1 14.9 117 389-518 40-164 (198)
92 PRK13942 protein-L-isoaspartat 99.0 1.6E-09 3.5E-14 107.9 12.0 109 371-491 62-176 (212)
93 TIGR00080 pimt protein-L-isoas 99.0 1.6E-09 3.6E-14 107.6 12.0 106 374-491 66-177 (215)
94 PLN02232 ubiquinone biosynthes 99.0 9.3E-10 2E-14 104.9 9.7 114 413-527 1-150 (160)
95 COG4976 Predicted methyltransf 99.0 2.7E-10 5.9E-15 113.6 6.1 145 376-527 113-268 (287)
96 PF05148 Methyltransf_8: Hypot 99.0 3.5E-09 7.5E-14 105.0 13.7 127 389-539 72-199 (219)
97 TIGR03533 L3_gln_methyl protei 99.0 6.2E-09 1.3E-13 108.3 15.1 122 389-522 121-272 (284)
98 TIGR00536 hemK_fam HemK family 99.0 2E-08 4.4E-13 104.2 18.8 124 391-525 116-270 (284)
99 PRK13255 thiopurine S-methyltr 99.0 2.4E-09 5.1E-14 107.5 11.4 95 389-489 37-153 (218)
100 COG4106 Tam Trans-aconitate me 99.0 1.6E-09 3.4E-14 107.5 9.7 118 389-518 30-151 (257)
101 TIGR03704 PrmC_rel_meth putati 98.9 2.8E-08 6.1E-13 101.6 17.3 125 390-526 87-242 (251)
102 KOG3045 Predicted RNA methylas 98.9 6.4E-09 1.4E-13 105.5 11.9 126 389-539 180-305 (325)
103 KOG3010 Methyltransferase [Gen 98.9 1.2E-09 2.6E-14 109.9 6.5 115 390-518 34-158 (261)
104 TIGR03438 probable methyltrans 98.9 8.1E-09 1.8E-13 108.1 12.4 103 389-492 63-178 (301)
105 PRK00312 pcm protein-L-isoaspa 98.9 1.4E-08 3E-13 100.5 12.9 96 388-491 77-175 (212)
106 PRK07402 precorrin-6B methylas 98.9 3.3E-08 7.1E-13 96.8 15.2 99 388-492 39-143 (196)
107 PLN03075 nicotianamine synthas 98.9 9.9E-09 2.1E-13 107.2 11.9 102 389-491 123-233 (296)
108 PRK14901 16S rRNA methyltransf 98.9 1.5E-08 3.2E-13 111.3 13.6 127 388-520 251-409 (434)
109 cd02440 AdoMet_MTases S-adenos 98.9 1.3E-08 2.7E-13 84.8 9.6 98 392-490 1-103 (107)
110 PF06080 DUF938: Protein of un 98.9 6.1E-08 1.3E-12 96.2 15.9 161 367-536 8-203 (204)
111 PRK10901 16S rRNA methyltransf 98.9 2.5E-08 5.4E-13 109.3 14.6 128 388-521 243-398 (427)
112 PRK01544 bifunctional N5-gluta 98.9 2.9E-08 6.2E-13 111.2 15.3 127 390-527 139-296 (506)
113 PRK11805 N5-glutamine S-adenos 98.9 3E-08 6.4E-13 104.4 14.2 120 391-522 135-284 (307)
114 PF05219 DREV: DREV methyltran 98.9 3.6E-08 7.9E-13 100.7 14.0 155 359-523 64-239 (265)
115 PRK13256 thiopurine S-methyltr 98.8 1.8E-08 4E-13 101.7 11.4 103 389-491 43-163 (226)
116 TIGR00438 rrmJ cell division p 98.8 2E-08 4.3E-13 97.7 11.1 92 389-491 32-146 (188)
117 COG2890 HemK Methylase of poly 98.8 9.7E-08 2.1E-12 99.4 16.1 131 392-534 113-273 (280)
118 KOG2361 Predicted methyltransf 98.8 1.7E-08 3.6E-13 101.7 8.8 158 365-525 49-238 (264)
119 PRK00811 spermidine synthase; 98.8 8.2E-08 1.8E-12 99.9 14.2 103 389-492 76-192 (283)
120 TIGR00563 rsmB ribosomal RNA s 98.8 6.3E-08 1.4E-12 106.2 13.7 107 388-495 237-372 (426)
121 PF03291 Pox_MCEL: mRNA cappin 98.8 3.4E-08 7.4E-13 105.0 10.8 136 389-525 62-268 (331)
122 PRK14904 16S rRNA methyltransf 98.7 2.5E-07 5.3E-12 102.1 17.1 126 388-520 249-402 (445)
123 PF02390 Methyltransf_4: Putat 98.7 9.2E-08 2E-12 94.5 12.3 122 390-521 18-157 (195)
124 KOG1975 mRNA cap methyltransfe 98.7 2.8E-08 6.1E-13 103.5 8.1 105 388-493 116-239 (389)
125 PHA03411 putative methyltransf 98.7 1.3E-07 2.9E-12 97.8 13.0 121 389-520 64-210 (279)
126 PRK13943 protein-L-isoaspartat 98.7 1.2E-07 2.6E-12 100.6 12.8 108 372-491 67-180 (322)
127 PRK14902 16S rRNA methyltransf 98.7 4.3E-07 9.3E-12 100.1 17.3 127 388-521 249-405 (444)
128 PRK01581 speE spermidine synth 98.7 3.3E-07 7.1E-12 98.3 14.7 160 359-525 121-298 (374)
129 COG2242 CobL Precorrin-6B meth 98.7 1.2E-06 2.6E-11 85.7 17.2 120 388-522 33-159 (187)
130 PRK14903 16S rRNA methyltransf 98.6 5.9E-08 1.3E-12 106.6 8.6 128 388-521 236-392 (431)
131 TIGR00446 nop2p NOL1/NOP2/sun 98.6 9.4E-08 2E-12 98.4 9.1 105 388-493 70-201 (264)
132 TIGR00417 speE spermidine synt 98.6 4.9E-07 1.1E-11 93.3 14.4 103 389-492 72-187 (270)
133 PF01135 PCMT: Protein-L-isoas 98.6 9.3E-08 2E-12 95.5 8.5 109 371-492 58-173 (209)
134 PRK04457 spermidine synthase; 98.6 9.1E-08 2E-12 98.6 8.6 103 389-491 66-177 (262)
135 KOG2940 Predicted methyltransf 98.6 4.6E-08 1E-12 97.8 6.0 134 390-526 73-229 (325)
136 PLN02366 spermidine synthase 98.6 8.1E-07 1.8E-11 93.7 14.9 104 389-493 91-208 (308)
137 smart00650 rADc Ribosomal RNA 98.6 4E-07 8.6E-12 87.2 11.2 96 389-490 13-112 (169)
138 PLN02781 Probable caffeoyl-CoA 98.6 6.5E-07 1.4E-11 90.8 13.1 98 389-491 68-178 (234)
139 PF05891 Methyltransf_PK: AdoM 98.6 1.3E-07 2.8E-12 94.5 7.2 137 389-525 55-202 (218)
140 PF05724 TPMT: Thiopurine S-me 98.6 5.3E-07 1.2E-11 90.6 11.7 131 388-523 36-189 (218)
141 PRK10909 rsmD 16S rRNA m(2)G96 98.5 3.9E-06 8.5E-11 83.3 17.4 131 354-492 22-160 (199)
142 PRK13168 rumA 23S rRNA m(5)U19 98.5 1E-06 2.2E-11 97.2 14.4 133 373-525 285-425 (443)
143 PHA03412 putative methyltransf 98.5 4E-07 8.6E-12 92.4 10.0 91 390-486 50-158 (241)
144 PRK11783 rlmL 23S rRNA m(2)G24 98.5 8.3E-07 1.8E-11 103.2 14.0 124 389-522 538-678 (702)
145 COG2519 GCD14 tRNA(1-methylade 98.5 1.8E-06 3.9E-11 88.0 14.5 120 388-522 93-218 (256)
146 TIGR00478 tly hemolysin TlyA f 98.5 8.3E-07 1.8E-11 89.9 11.3 122 389-525 75-218 (228)
147 COG0220 Predicted S-adenosylme 98.5 7.2E-07 1.6E-11 90.3 10.8 99 391-491 50-164 (227)
148 COG2518 Pcm Protein-L-isoaspar 98.5 1.1E-06 2.4E-11 87.5 11.6 96 388-491 71-169 (209)
149 PRK11727 23S rRNA mA1618 methy 98.5 2.7E-06 5.8E-11 90.2 15.0 98 368-465 89-201 (321)
150 PRK03612 spermidine synthase; 98.5 2.5E-06 5.4E-11 96.0 15.2 125 389-518 297-438 (521)
151 TIGR00479 rumA 23S rRNA (uraci 98.5 2.2E-06 4.7E-11 94.0 14.3 121 389-523 292-419 (431)
152 PLN02672 methionine S-methyltr 98.5 1.6E-06 3.5E-11 103.9 14.1 126 390-525 119-304 (1082)
153 PF08704 GCD14: tRNA methyltra 98.4 4.2E-06 9E-11 85.8 15.2 120 388-522 39-169 (247)
154 COG1041 Predicted DNA modifica 98.4 2.2E-06 4.7E-11 91.1 12.8 137 377-526 185-332 (347)
155 PF00891 Methyltransf_2: O-met 98.4 2.8E-06 6E-11 85.7 12.0 93 389-493 100-201 (241)
156 PF07942 N2227: N2227-like pro 98.4 2.3E-06 5E-11 88.6 10.8 148 373-524 40-242 (270)
157 PRK15128 23S rRNA m(5)C1962 me 98.4 1.6E-06 3.4E-11 94.5 10.1 102 389-491 220-339 (396)
158 COG2521 Predicted archaeal met 98.4 1.2E-06 2.7E-11 88.0 8.4 152 371-526 118-279 (287)
159 KOG2904 Predicted methyltransf 98.4 9.2E-06 2E-10 83.6 14.7 120 371-492 131-286 (328)
160 PRK01544 bifunctional N5-gluta 98.3 3.4E-06 7.3E-11 94.7 12.5 103 387-491 345-462 (506)
161 KOG2899 Predicted methyltransf 98.3 2.6E-06 5.6E-11 86.2 9.8 101 390-490 59-208 (288)
162 COG0500 SmtA SAM-dependent met 98.3 6.6E-06 1.4E-10 70.3 10.4 98 393-493 52-157 (257)
163 PRK03522 rumB 23S rRNA methylu 98.3 3.7E-06 8E-11 88.7 10.2 120 389-524 173-296 (315)
164 PRK10611 chemotaxis methyltran 98.3 2.9E-06 6.3E-11 88.7 9.3 102 390-491 116-262 (287)
165 PF01739 CheR: CheR methyltran 98.3 1.7E-06 3.8E-11 85.7 6.8 104 389-492 31-176 (196)
166 COG4122 Predicted O-methyltran 98.2 7.6E-06 1.7E-10 82.4 10.4 111 369-490 46-165 (219)
167 TIGR02085 meth_trns_rumB 23S r 98.2 1.4E-05 3E-10 86.5 13.2 119 389-524 233-356 (374)
168 PF11968 DUF3321: Putative met 98.2 3.2E-05 6.9E-10 77.5 13.8 144 373-540 35-195 (219)
169 PF12147 Methyltransf_20: Puta 98.2 4.7E-05 1E-09 79.2 15.0 138 388-527 134-301 (311)
170 PLN02476 O-methyltransferase 98.1 8.2E-06 1.8E-10 84.9 9.5 98 389-491 118-228 (278)
171 PF01596 Methyltransf_3: O-met 98.1 1E-05 2.3E-10 80.7 8.8 98 390-492 46-156 (205)
172 KOG1499 Protein arginine N-met 98.1 6.7E-06 1.5E-10 87.1 7.6 98 389-488 60-164 (346)
173 PF10294 Methyltransf_16: Puta 98.1 1.5E-05 3.2E-10 77.2 8.7 103 389-493 45-158 (173)
174 KOG1269 SAM-dependent methyltr 98.0 9.3E-06 2E-10 87.5 7.5 100 389-490 110-214 (364)
175 PLN02823 spermine synthase 98.0 0.00015 3.4E-09 77.5 16.4 103 389-492 103-221 (336)
176 PRK14896 ksgA 16S ribosomal RN 98.0 4E-05 8.6E-10 78.7 11.4 83 372-462 16-100 (258)
177 PRK00274 ksgA 16S ribosomal RN 98.0 3.6E-05 7.8E-10 79.7 11.1 82 373-461 30-113 (272)
178 PF01170 UPF0020: Putative RNA 98.0 3.7E-05 8E-10 74.9 10.5 124 388-525 27-172 (179)
179 COG1352 CheR Methylase of chem 98.0 3.5E-05 7.6E-10 79.9 10.7 132 361-492 66-242 (268)
180 KOG3191 Predicted N6-DNA-methy 98.0 0.00014 3E-09 71.1 13.8 123 390-523 44-192 (209)
181 COG0421 SpeE Spermidine syntha 98.0 0.00011 2.3E-09 76.9 14.1 118 373-492 61-191 (282)
182 PF05185 PRMT5: PRMT5 arginine 98.0 3.8E-05 8.2E-10 85.1 10.6 97 390-488 187-294 (448)
183 PLN02589 caffeoyl-CoA O-methyl 97.9 3.5E-05 7.6E-10 79.1 8.8 96 390-490 80-189 (247)
184 KOG3987 Uncharacterized conser 97.9 2E-05 4.3E-10 78.2 6.6 121 358-490 83-206 (288)
185 PTZ00338 dimethyladenosine tra 97.9 7.5E-05 1.6E-09 78.5 11.4 94 372-474 23-119 (294)
186 TIGR00755 ksgA dimethyladenosi 97.9 8E-05 1.7E-09 76.1 11.3 81 373-461 17-102 (253)
187 TIGR00095 RNA methyltransferas 97.9 0.00018 3.9E-09 70.8 12.7 101 389-492 49-160 (189)
188 COG2263 Predicted RNA methylas 97.9 0.00013 2.8E-09 71.8 11.2 118 389-523 45-167 (198)
189 PF02527 GidB: rRNA small subu 97.9 0.00042 9.1E-09 68.2 14.8 141 370-523 28-174 (184)
190 KOG1331 Predicted methyltransf 97.8 1.1E-05 2.4E-10 83.5 3.2 98 389-494 45-146 (293)
191 PRK04338 N(2),N(2)-dimethylgua 97.8 5.7E-05 1.2E-09 82.1 8.9 97 390-492 58-159 (382)
192 PF02384 N6_Mtase: N-6 DNA Met 97.8 3.7E-05 8E-10 80.4 7.0 117 372-493 33-185 (311)
193 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.8 9.1E-05 2E-09 76.3 9.4 136 389-524 56-239 (256)
194 PRK04148 hypothetical protein; 97.7 0.00026 5.7E-09 66.2 10.7 94 374-482 5-102 (134)
195 PF02475 Met_10: Met-10+ like- 97.7 0.00017 3.7E-09 71.8 9.5 119 357-488 75-199 (200)
196 PRK11933 yebU rRNA (cytosine-C 97.7 0.00022 4.7E-09 79.6 10.8 104 388-492 112-243 (470)
197 PRK05031 tRNA (uracil-5-)-meth 97.6 0.00055 1.2E-08 73.9 12.3 116 391-524 208-343 (362)
198 KOG1661 Protein-L-isoaspartate 97.6 0.00023 5E-09 71.0 8.5 95 389-490 82-192 (237)
199 PF01564 Spermine_synth: Sperm 97.6 0.00024 5.3E-09 72.7 8.7 142 371-519 60-215 (246)
200 COG3963 Phospholipid N-methylt 97.6 0.00021 4.5E-09 69.1 7.3 97 389-490 48-155 (194)
201 PRK00536 speE spermidine synth 97.5 0.0012 2.5E-08 68.5 13.0 136 373-522 57-197 (262)
202 COG1092 Predicted SAM-dependen 97.5 0.00045 9.8E-09 75.3 10.3 103 390-492 218-337 (393)
203 KOG1663 O-methyltransferase [S 97.5 0.0022 4.8E-08 64.9 13.9 97 390-491 74-183 (237)
204 TIGR02987 met_A_Alw26 type II 97.5 0.00047 1E-08 77.8 10.1 105 390-494 32-199 (524)
205 COG2520 Predicted methyltransf 97.4 0.0019 4E-08 69.3 13.6 143 364-519 169-315 (341)
206 PF01269 Fibrillarin: Fibrilla 97.4 0.0029 6.3E-08 63.9 14.0 154 366-525 51-213 (229)
207 PF03602 Cons_hypoth95: Conser 97.4 0.00046 1E-08 67.7 8.0 102 389-492 42-154 (183)
208 KOG1500 Protein arginine N-met 97.4 0.00048 1E-08 72.7 8.3 98 389-490 177-281 (517)
209 PF09243 Rsm22: Mitochondrial 97.4 0.0016 3.6E-08 67.7 12.1 136 374-524 22-168 (274)
210 TIGR02143 trmA_only tRNA (urac 97.3 0.00074 1.6E-08 72.7 9.2 115 391-523 199-333 (353)
211 PF01728 FtsJ: FtsJ-like methy 97.3 0.00062 1.3E-08 65.6 7.8 97 389-491 23-139 (181)
212 COG0357 GidB Predicted S-adeno 97.3 0.0041 8.8E-08 62.7 13.4 148 366-525 43-196 (215)
213 COG2265 TrmA SAM-dependent met 97.3 0.0034 7.5E-08 69.4 13.6 120 388-521 292-417 (432)
214 PRK11760 putative 23S rRNA C24 97.3 0.0074 1.6E-07 64.7 15.4 137 388-536 210-352 (357)
215 KOG2915 tRNA(1-methyladenosine 97.3 0.0077 1.7E-07 62.4 14.8 131 374-523 94-234 (314)
216 PRK11783 rlmL 23S rRNA m(2)G24 97.2 0.003 6.4E-08 74.0 13.2 106 386-492 187-348 (702)
217 PF10672 Methyltrans_SAM: S-ad 97.2 0.0015 3.2E-08 68.6 9.6 103 390-492 124-239 (286)
218 KOG2798 Putative trehalase [Ca 97.2 0.00084 1.8E-08 70.5 7.5 149 371-523 132-336 (369)
219 KOG3178 Hydroxyindole-O-methyl 97.2 0.0019 4.1E-08 68.9 10.0 93 390-492 178-276 (342)
220 COG0030 KsgA Dimethyladenosine 97.2 0.0037 7.9E-08 64.7 11.6 96 374-478 19-117 (259)
221 KOG2352 Predicted spermine/spe 97.2 0.0018 3.9E-08 71.7 9.7 98 392-491 51-161 (482)
222 KOG3420 Predicted RNA methylas 97.1 0.00066 1.4E-08 64.3 5.3 85 373-462 36-123 (185)
223 COG0144 Sun tRNA and rRNA cyto 97.1 0.0041 8.8E-08 67.1 12.1 129 387-521 154-314 (355)
224 TIGR03439 methyl_EasF probable 97.1 0.0028 6E-08 67.5 10.6 103 389-491 76-197 (319)
225 COG1189 Predicted rRNA methyla 97.1 0.0063 1.4E-07 62.0 12.4 128 388-525 78-225 (245)
226 TIGR00308 TRM1 tRNA(guanine-26 97.0 0.0016 3.5E-08 70.7 8.0 96 391-492 46-148 (374)
227 COG3897 Predicted methyltransf 97.0 0.0031 6.7E-08 62.6 8.7 106 389-500 79-187 (218)
228 COG0742 N6-adenine-specific me 97.0 0.0097 2.1E-07 58.8 12.0 103 389-492 43-155 (187)
229 COG0293 FtsJ 23S rRNA methylas 97.0 0.0078 1.7E-07 60.2 11.3 111 367-491 26-159 (205)
230 COG4262 Predicted spermidine s 96.9 0.0074 1.6E-07 64.8 11.2 174 357-537 258-451 (508)
231 KOG3201 Uncharacterized conser 96.9 0.00093 2E-08 64.3 4.0 127 389-525 29-167 (201)
232 KOG0820 Ribosomal RNA adenine 96.8 0.0069 1.5E-07 62.8 10.1 69 388-461 57-131 (315)
233 KOG1709 Guanidinoacetate methy 96.8 0.0049 1.1E-07 62.0 8.6 109 371-490 88-205 (271)
234 PF04816 DUF633: Family of unk 96.8 0.017 3.6E-07 57.9 12.2 123 393-530 1-130 (205)
235 PF08123 DOT1: Histone methyla 96.7 0.0061 1.3E-07 61.0 8.4 118 366-489 23-156 (205)
236 PF13679 Methyltransf_32: Meth 96.7 0.017 3.6E-07 54.0 10.8 103 388-499 24-139 (141)
237 PF05958 tRNA_U5-meth_tr: tRNA 96.6 0.0032 7E-08 67.8 5.9 117 391-524 198-333 (352)
238 COG1889 NOP1 Fibrillarin-like 96.5 0.079 1.7E-06 53.1 14.6 153 366-525 54-215 (231)
239 COG4627 Uncharacterized protei 96.5 0.0017 3.7E-08 62.1 2.9 74 444-519 38-133 (185)
240 PF01861 DUF43: Protein of unk 96.4 0.11 2.4E-06 53.2 15.2 171 389-578 44-221 (243)
241 COG0116 Predicted N6-adenine-s 96.3 0.029 6.4E-07 60.9 10.8 102 389-492 191-345 (381)
242 PRK00050 16S rRNA m(4)C1402 me 96.3 0.0086 1.9E-07 63.2 6.7 72 389-462 19-99 (296)
243 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.9 0.0082 1.8E-07 62.8 4.7 127 388-520 84-244 (283)
244 PF05971 Methyltransf_10: Prot 95.8 0.039 8.5E-07 58.3 9.1 96 368-463 80-187 (299)
245 COG4798 Predicted methyltransf 95.8 0.11 2.4E-06 51.8 11.3 135 388-525 47-206 (238)
246 PF09445 Methyltransf_15: RNA 95.6 0.026 5.7E-07 54.6 6.3 69 391-461 1-77 (163)
247 PF00398 RrnaAD: Ribosomal RNA 95.5 0.065 1.4E-06 55.2 9.0 103 371-483 16-123 (262)
248 KOG2187 tRNA uracil-5-methyltr 95.4 0.051 1.1E-06 60.8 8.3 70 372-446 370-442 (534)
249 PF06962 rRNA_methylase: Putat 95.4 0.14 3E-06 48.5 10.0 109 411-522 1-123 (140)
250 PF13578 Methyltransf_24: Meth 95.3 0.0061 1.3E-07 53.5 0.8 93 394-490 1-104 (106)
251 PF10354 DUF2431: Domain of un 95.0 0.33 7.2E-06 47.0 11.9 122 396-524 3-152 (166)
252 PRK13699 putative methylase; P 95.0 0.098 2.1E-06 53.1 8.5 73 448-539 15-101 (227)
253 PF03059 NAS: Nicotianamine sy 95.0 0.22 4.8E-06 52.2 11.2 101 390-491 121-230 (276)
254 COG2384 Predicted SAM-dependen 94.8 0.94 2E-05 46.0 14.5 153 374-545 7-166 (226)
255 COG1064 AdhP Zn-dependent alco 94.6 0.15 3.1E-06 55.0 9.1 93 388-493 165-261 (339)
256 COG5459 Predicted rRNA methyla 94.6 0.061 1.3E-06 57.7 5.9 114 374-492 102-226 (484)
257 TIGR01444 fkbM_fam methyltrans 94.4 0.075 1.6E-06 48.7 5.4 39 392-430 1-43 (143)
258 KOG1122 tRNA and rRNA cytosine 94.2 0.33 7.2E-06 53.4 10.6 130 387-524 239-400 (460)
259 COG3129 Predicted SAM-dependen 94.1 0.12 2.7E-06 52.7 6.6 96 367-462 54-162 (292)
260 KOG3115 Methyltransferase-like 93.8 0.15 3.2E-06 51.2 6.4 30 390-419 61-94 (249)
261 KOG4589 Cell division protein 93.7 0.27 5.9E-06 48.8 8.0 92 388-490 68-183 (232)
262 PLN02668 indole-3-acetate carb 93.5 0.83 1.8E-05 50.1 12.3 19 390-408 64-82 (386)
263 KOG1596 Fibrillarin and relate 93.5 0.73 1.6E-05 47.5 10.9 129 386-520 153-291 (317)
264 COG4076 Predicted RNA methylas 93.2 0.11 2.4E-06 51.5 4.3 90 390-488 33-132 (252)
265 PRK11524 putative methyltransf 93.1 0.27 5.8E-06 51.4 7.5 44 448-491 22-80 (284)
266 KOG2793 Putative N2,N2-dimethy 93.0 1.8 3.9E-05 44.8 13.1 101 390-491 87-199 (248)
267 PF03492 Methyltransf_7: SAM d 92.8 0.53 1.1E-05 50.6 9.4 78 389-467 16-120 (334)
268 PF04672 Methyltransf_19: S-ad 92.6 0.74 1.6E-05 48.1 9.7 101 389-492 68-191 (267)
269 KOG2198 tRNA cytosine-5-methyl 92.1 2.1 4.5E-05 46.6 12.6 116 375-492 140-297 (375)
270 PF06859 Bin3: Bicoid-interact 91.7 0.08 1.7E-06 48.0 1.3 40 453-493 1-46 (110)
271 COG0286 HsdM Type I restrictio 91.6 1.3 2.8E-05 50.1 11.0 117 372-493 173-328 (489)
272 PF07091 FmrO: Ribosomal RNA m 91.4 0.51 1.1E-05 48.8 6.9 129 389-522 105-242 (251)
273 PRK09880 L-idonate 5-dehydroge 91.4 0.92 2E-05 47.9 9.1 92 389-492 169-267 (343)
274 PRK01747 mnmC bifunctional tRN 90.5 1.2 2.7E-05 51.8 9.9 56 452-521 165-224 (662)
275 cd08254 hydroxyacyl_CoA_DH 6-h 90.5 1.3 2.8E-05 45.8 9.1 91 389-491 165-263 (338)
276 PF03269 DUF268: Caenorhabditi 90.5 0.28 6.1E-06 47.6 3.8 70 451-522 61-143 (177)
277 cd08283 FDH_like_1 Glutathione 90.4 1 2.2E-05 48.6 8.6 98 389-491 184-306 (386)
278 KOG2920 Predicted methyltransf 90.4 0.11 2.3E-06 54.4 0.9 127 369-502 97-245 (282)
279 PRK09424 pntA NAD(P) transhydr 90.3 1.6 3.5E-05 49.6 10.2 98 388-491 163-285 (509)
280 COG1568 Predicted methyltransf 89.3 2.1 4.5E-05 45.1 9.1 168 389-579 152-332 (354)
281 cd00315 Cyt_C5_DNA_methylase C 88.5 5.3 0.00011 41.6 11.8 124 392-523 2-142 (275)
282 KOG0822 Protein kinase inhibit 87.2 1.3 2.9E-05 50.1 6.6 97 390-488 368-475 (649)
283 PF07757 AdoMet_MTase: Predict 87.1 0.82 1.8E-05 41.6 4.1 30 389-418 58-87 (112)
284 PF01555 N6_N4_Mtase: DNA meth 86.6 2.4 5.2E-05 41.2 7.5 51 471-538 36-87 (231)
285 TIGR02822 adh_fam_2 zinc-bindi 86.5 4.3 9.4E-05 42.8 9.9 88 388-492 164-255 (329)
286 PF04989 CmcI: Cephalosporin h 86.5 3.7 7.9E-05 41.4 8.8 101 389-492 32-148 (206)
287 KOG1099 SAM-dependent methyltr 86.4 1.3 2.9E-05 45.4 5.6 88 390-489 42-161 (294)
288 COG1063 Tdh Threonine dehydrog 85.7 3.7 8.1E-05 44.1 9.1 92 390-493 169-271 (350)
289 cd08230 glucose_DH Glucose deh 85.1 3.6 7.8E-05 43.6 8.6 93 389-492 172-270 (355)
290 COG4301 Uncharacterized conser 85.0 6.7 0.00015 40.9 9.9 99 390-491 79-193 (321)
291 KOG1227 Putative methyltransfe 84.1 0.73 1.6E-05 48.8 2.6 130 345-486 154-290 (351)
292 PF00107 ADH_zinc_N: Zinc-bind 83.9 2.1 4.5E-05 38.3 5.2 82 399-492 1-90 (130)
293 KOG0024 Sorbitol dehydrogenase 83.6 5.9 0.00013 42.6 9.1 92 388-491 168-273 (354)
294 PRK10742 putative methyltransf 83.6 3.9 8.6E-05 42.4 7.6 68 392-461 91-172 (250)
295 cd08245 CAD Cinnamyl alcohol d 82.6 7.6 0.00016 40.2 9.6 91 389-491 162-256 (330)
296 PF14740 DUF4471: Domain of un 82.4 2.4 5.1E-05 44.9 5.6 65 451-521 220-286 (289)
297 KOG4058 Uncharacterized conser 82.2 13 0.00027 36.1 9.8 101 387-494 70-175 (199)
298 TIGR03451 mycoS_dep_FDH mycoth 81.5 7.4 0.00016 41.3 9.2 92 388-492 175-277 (358)
299 TIGR03366 HpnZ_proposed putati 81.3 6.6 0.00014 40.3 8.4 90 389-491 120-218 (280)
300 cd08239 THR_DH_like L-threonin 80.5 8.9 0.00019 40.1 9.3 92 389-492 163-263 (339)
301 PLN02586 probable cinnamyl alc 80.4 5.4 0.00012 42.7 7.7 92 389-491 183-278 (360)
302 cd05188 MDR Medium chain reduc 80.3 9.2 0.0002 37.7 8.8 92 389-492 134-233 (271)
303 cd08237 ribitol-5-phosphate_DH 80.3 7.4 0.00016 41.2 8.6 88 389-491 163-256 (341)
304 PF05430 Methyltransf_30: S-ad 79.4 9.6 0.00021 35.3 7.9 58 452-523 49-110 (124)
305 cd08281 liver_ADH_like1 Zinc-d 79.0 8.2 0.00018 41.3 8.6 91 389-491 191-290 (371)
306 cd08234 threonine_DH_like L-th 78.8 12 0.00027 38.6 9.6 91 388-491 158-257 (334)
307 PRK11524 putative methyltransf 78.5 5.7 0.00012 41.5 6.9 42 388-429 207-250 (284)
308 KOG2539 Mitochondrial/chloropl 78.1 5.6 0.00012 44.6 6.9 102 389-492 200-316 (491)
309 TIGR00561 pntA NAD(P) transhyd 78.1 5.2 0.00011 45.6 6.9 94 389-488 163-281 (511)
310 PF00145 DNA_methylase: C-5 cy 77.7 20 0.00044 36.9 10.8 125 392-526 2-144 (335)
311 PF01555 N6_N4_Mtase: DNA meth 77.6 3.8 8.3E-05 39.8 5.1 38 388-425 190-229 (231)
312 cd08232 idonate-5-DH L-idonate 77.6 13 0.00027 38.8 9.3 91 389-491 165-262 (339)
313 TIGR01202 bchC 2-desacetyl-2-h 77.6 8.5 0.00019 40.1 8.0 84 389-492 144-232 (308)
314 cd00401 AdoHcyase S-adenosyl-L 77.6 9.9 0.00021 42.3 8.7 97 374-492 189-290 (413)
315 COG1565 Uncharacterized conser 77.4 5.5 0.00012 43.4 6.5 65 353-421 45-121 (370)
316 cd08255 2-desacetyl-2-hydroxye 76.4 16 0.00034 36.8 9.3 90 388-491 96-190 (277)
317 PF02005 TRM: N2,N2-dimethylgu 75.8 6 0.00013 43.4 6.4 97 390-492 50-155 (377)
318 KOG1562 Spermidine synthase [A 75.6 7.3 0.00016 41.5 6.6 102 389-492 121-237 (337)
319 PLN02740 Alcohol dehydrogenase 75.2 13 0.00028 40.1 8.8 93 388-492 197-301 (381)
320 KOG2671 Putative RNA methylase 75.2 5.1 0.00011 43.4 5.4 106 388-494 207-357 (421)
321 PHA01634 hypothetical protein 75.0 11 0.00023 35.7 6.8 34 389-422 28-64 (156)
322 TIGR02825 B4_12hDH leukotriene 74.9 20 0.00044 37.2 10.0 91 388-491 137-237 (325)
323 PRK15001 SAM-dependent 23S rib 73.7 35 0.00076 37.5 11.6 94 392-491 47-142 (378)
324 PRK13699 putative methylase; P 73.3 11 0.00025 38.1 7.4 42 388-429 162-205 (227)
325 COG3510 CmcI Cephalosporin hyd 73.1 12 0.00026 37.7 7.1 124 386-516 66-211 (237)
326 COG1867 TRM1 N2,N2-dimethylgua 73.0 9.8 0.00021 41.6 7.0 98 390-492 53-155 (380)
327 PLN02827 Alcohol dehydrogenase 72.2 17 0.00036 39.3 8.8 92 389-492 193-296 (378)
328 TIGR00006 S-adenosyl-methyltra 72.1 13 0.00028 39.7 7.6 73 388-461 19-100 (305)
329 PLN03154 putative allyl alcoho 71.8 22 0.00047 37.9 9.4 91 388-491 157-258 (348)
330 PRK10309 galactitol-1-phosphat 71.5 22 0.00048 37.4 9.3 92 389-492 160-261 (347)
331 TIGR03201 dearomat_had 6-hydro 71.3 23 0.00049 37.5 9.4 93 388-492 165-273 (349)
332 KOG1253 tRNA methyltransferase 70.8 3.9 8.4E-05 46.1 3.5 99 389-493 109-218 (525)
333 PLN02178 cinnamyl-alcohol dehy 70.5 13 0.00029 40.1 7.5 91 389-491 178-273 (375)
334 cd05565 PTS_IIB_lactose PTS_II 69.0 12 0.00025 33.5 5.5 78 392-492 2-79 (99)
335 cd05278 FDH_like Formaldehyde 67.7 25 0.00054 36.6 8.7 90 389-491 167-267 (347)
336 PF03514 GRAS: GRAS domain fam 67.2 36 0.00079 37.2 10.1 100 389-490 110-243 (374)
337 cd08277 liver_alcohol_DH_like 66.6 27 0.00059 37.2 8.9 93 388-492 183-287 (365)
338 cd08261 Zn_ADH7 Alcohol dehydr 66.5 30 0.00064 36.0 9.0 91 389-491 159-258 (337)
339 cd08285 NADP_ADH NADP(H)-depen 66.5 31 0.00067 36.2 9.2 91 389-491 166-266 (351)
340 KOG1501 Arginine N-methyltrans 65.8 10 0.00022 42.5 5.3 64 371-435 46-114 (636)
341 cd08242 MDR_like Medium chain 65.0 40 0.00088 34.7 9.5 84 389-490 155-244 (319)
342 KOG2730 Methylase [General fun 64.9 5 0.00011 41.1 2.6 92 390-485 95-196 (263)
343 TIGR00027 mthyl_TIGR00027 meth 64.7 1.8E+02 0.0038 30.2 14.1 101 390-491 82-197 (260)
344 PF10237 N6-adenineMlase: Prob 64.6 84 0.0018 30.5 10.9 93 389-492 25-124 (162)
345 TIGR00853 pts-lac PTS system, 64.3 22 0.00047 31.3 6.3 77 391-490 4-80 (95)
346 cd08298 CAD2 Cinnamyl alcohol 64.3 46 0.001 34.3 9.9 86 389-491 167-256 (329)
347 PF02636 Methyltransf_28: Puta 64.2 13 0.00029 37.9 5.7 33 390-422 19-63 (252)
348 COG0604 Qor NADPH:quinone redu 64.0 25 0.00055 37.5 7.9 92 388-492 141-242 (326)
349 PF04445 SAM_MT: Putative SAM- 63.2 9.1 0.0002 39.4 4.2 69 391-461 77-159 (234)
350 cd08300 alcohol_DH_class_III c 63.0 36 0.00077 36.3 8.9 92 388-491 185-288 (368)
351 TIGR02818 adh_III_F_hyde S-(hy 62.5 26 0.00056 37.5 7.8 93 388-492 184-288 (368)
352 cd05285 sorbitol_DH Sorbitol d 62.2 47 0.001 34.8 9.5 92 388-491 161-265 (343)
353 cd08236 sugar_DH NAD(P)-depend 61.3 47 0.001 34.6 9.3 91 389-491 159-258 (343)
354 PLN02514 cinnamyl-alcohol dehy 61.0 33 0.00072 36.5 8.3 92 389-491 180-275 (357)
355 cd08294 leukotriene_B4_DH_like 61.0 35 0.00075 35.1 8.2 90 389-491 143-241 (329)
356 COG0270 Dcm Site-specific DNA 60.9 27 0.00058 37.3 7.5 120 390-518 3-141 (328)
357 PF12553 DUF3742: Protein of u 60.9 6.8 0.00015 31.3 2.2 17 25-41 2-18 (54)
358 TIGR00497 hsdM type I restrict 60.3 63 0.0014 36.6 10.6 104 389-493 217-357 (501)
359 cd08231 MDR_TM0436_like Hypoth 60.0 57 0.0012 34.4 9.8 90 389-491 177-280 (361)
360 TIGR02819 fdhA_non_GSH formald 59.9 59 0.0013 35.5 10.1 98 389-492 185-300 (393)
361 cd08295 double_bond_reductase_ 59.1 52 0.0011 34.4 9.2 91 388-491 150-251 (338)
362 KOG2651 rRNA adenine N-6-methy 58.3 15 0.00032 40.5 4.8 52 374-425 138-192 (476)
363 TIGR00675 dcm DNA-methyltransf 57.3 46 0.001 35.4 8.5 122 393-522 1-138 (315)
364 PF11899 DUF3419: Protein of u 56.9 29 0.00064 38.1 7.0 59 433-492 272-335 (380)
365 PTZ00357 methyltransferase; Pr 56.0 33 0.00071 40.7 7.3 94 391-486 702-830 (1072)
366 TIGR00692 tdh L-threonine 3-de 55.8 75 0.0016 33.2 9.7 92 389-492 161-262 (340)
367 cd05564 PTS_IIB_chitobiose_lic 55.6 26 0.00055 30.8 5.2 80 396-497 4-84 (96)
368 cd08301 alcohol_DH_plants Plan 54.7 43 0.00093 35.6 7.8 93 388-492 186-290 (369)
369 cd08293 PTGR2 Prostaglandin re 54.4 49 0.0011 34.5 8.0 88 390-491 155-254 (345)
370 cd08279 Zn_ADH_class_III Class 53.6 85 0.0018 33.3 9.8 91 389-491 182-282 (363)
371 PRK09590 celB cellobiose phosp 53.5 36 0.00079 30.6 5.9 87 392-501 3-92 (104)
372 PRK10083 putative oxidoreducta 53.3 60 0.0013 33.7 8.5 93 388-492 159-260 (339)
373 PF05711 TylF: Macrocin-O-meth 53.2 1.5E+02 0.0033 30.7 11.2 43 470-519 191-233 (248)
374 cd05283 CAD1 Cinnamyl alcohol 53.1 67 0.0014 33.6 8.8 92 389-492 169-264 (337)
375 PRK10458 DNA cytosine methylas 53.0 2.5E+02 0.0054 31.9 13.7 49 372-420 68-121 (467)
376 cd08263 Zn_ADH10 Alcohol dehyd 52.6 68 0.0015 34.0 8.9 91 389-491 187-287 (367)
377 PF07423 DUF1510: Protein of u 52.6 13 0.00028 37.9 3.2 29 13-41 9-37 (217)
378 PF02254 TrkA_N: TrkA-N domain 52.6 87 0.0019 27.3 8.2 100 398-520 4-113 (116)
379 KOG4174 Uncharacterized conser 52.4 1.8E+02 0.0039 30.6 11.3 128 389-523 56-216 (282)
380 cd08296 CAD_like Cinnamyl alco 52.2 87 0.0019 32.7 9.5 91 389-492 163-260 (333)
381 cd05281 TDH Threonine dehydrog 51.9 87 0.0019 32.7 9.5 90 389-491 163-262 (341)
382 cd08233 butanediol_DH_like (2R 51.7 79 0.0017 33.2 9.2 92 389-492 172-273 (351)
383 cd08278 benzyl_alcohol_DH Benz 50.4 71 0.0015 34.0 8.6 92 389-492 186-286 (365)
384 TIGR00936 ahcY adenosylhomocys 50.0 41 0.0009 37.4 6.8 85 389-492 194-283 (406)
385 cd08238 sorbose_phosphate_red 49.2 81 0.0017 34.4 9.0 91 388-490 174-287 (410)
386 COG0686 Ald Alanine dehydrogen 49.1 40 0.00086 36.5 6.2 94 390-488 168-265 (371)
387 PRK05476 S-adenosyl-L-homocyst 48.9 39 0.00084 37.8 6.5 85 389-492 211-300 (425)
388 cd08240 6_hydroxyhexanoate_dh_ 47.9 83 0.0018 32.9 8.6 91 389-491 175-274 (350)
389 PLN02702 L-idonate 5-dehydroge 47.5 1.2E+02 0.0026 32.2 9.7 92 389-492 181-286 (364)
390 KOG0023 Alcohol dehydrogenase, 46.6 32 0.00069 37.2 5.0 96 389-493 181-281 (360)
391 TIGR00518 alaDH alanine dehydr 46.2 27 0.00059 38.0 4.7 97 389-490 166-266 (370)
392 cd08286 FDH_like_ADH2 formalde 45.0 1.1E+02 0.0024 31.9 9.0 90 389-491 166-266 (345)
393 PRK05396 tdh L-threonine 3-deh 44.9 1.1E+02 0.0024 31.9 8.9 91 389-492 163-264 (341)
394 cd08289 MDR_yhfp_like Yhfp put 44.8 1E+02 0.0022 31.6 8.5 90 390-492 147-244 (326)
395 cd08274 MDR9 Medium chain dehy 44.5 1E+02 0.0022 32.1 8.5 88 389-491 177-273 (350)
396 cd05279 Zn_ADH1 Liver alcohol 44.0 1E+02 0.0022 32.8 8.6 90 389-492 183-286 (365)
397 cd08243 quinone_oxidoreductase 43.9 1E+02 0.0022 31.2 8.3 90 389-492 142-239 (320)
398 cd01842 SGNH_hydrolase_like_5 42.6 1.2E+02 0.0026 30.2 8.0 74 449-524 46-150 (183)
399 KOG2352 Predicted spermine/spe 42.1 36 0.00077 38.6 4.8 104 390-493 296-418 (482)
400 KOG1098 Putative SAM-dependent 41.8 25 0.00054 40.9 3.6 33 388-420 43-80 (780)
401 cd08265 Zn_ADH3 Alcohol dehydr 41.3 1.3E+02 0.0028 32.4 8.9 89 389-491 203-307 (384)
402 cd08246 crotonyl_coA_red croto 40.9 1.8E+02 0.004 31.1 10.1 89 389-491 193-315 (393)
403 PF04202 Mfp-3: Foot protein 3 40.3 15 0.00033 30.5 1.2 20 22-41 4-23 (71)
404 cd08241 QOR1 Quinone oxidoredu 39.1 1.8E+02 0.0039 29.1 9.2 90 389-491 139-238 (323)
405 PRK13855 type IV secretion sys 38.6 28 0.00062 38.1 3.3 68 5-90 15-84 (376)
406 PRK09489 rsmC 16S ribosomal RN 37.3 2E+02 0.0043 31.2 9.5 93 390-492 20-113 (342)
407 cd08260 Zn_ADH6 Alcohol dehydr 37.2 1.5E+02 0.0032 30.9 8.4 91 389-491 165-264 (345)
408 PF03446 NAD_binding_2: NAD bi 37.1 1.2E+02 0.0025 28.8 7.0 110 392-522 3-118 (163)
409 cd08287 FDH_like_ADH3 formalde 36.9 2E+02 0.0043 29.9 9.4 91 389-492 168-269 (345)
410 COG0287 TyrA Prephenate dehydr 36.6 98 0.0021 32.6 6.9 86 391-488 4-95 (279)
411 KOG2912 Predicted DNA methylas 36.4 86 0.0019 34.1 6.3 110 356-465 67-190 (419)
412 cd08235 iditol_2_DH_like L-idi 36.3 1.9E+02 0.0042 29.9 9.1 90 389-491 165-265 (343)
413 cd08270 MDR4 Medium chain dehy 36.3 2.2E+02 0.0048 28.7 9.4 85 390-491 133-222 (305)
414 cd05284 arabinose_DH_like D-ar 36.2 1.7E+02 0.0036 30.4 8.6 90 389-491 167-266 (340)
415 COG5271 MDN1 AAA ATPase contai 35.8 50 0.0011 43.3 5.0 17 472-488 4419-4435(4600)
416 PRK06701 short chain dehydroge 35.7 1.8E+02 0.004 29.9 8.7 102 390-491 46-181 (290)
417 COG0863 DNA modification methy 34.4 99 0.0021 31.7 6.5 50 472-540 80-129 (302)
418 COG1255 Uncharacterized protei 34.1 1.2E+02 0.0026 28.2 6.1 82 390-487 14-100 (129)
419 PF11312 DUF3115: Protein of u 34.0 4.8E+02 0.01 28.2 11.5 23 471-493 222-244 (315)
420 PF05206 TRM13: Methyltransfer 34.0 39 0.00085 35.2 3.4 32 388-419 17-57 (259)
421 cd05289 MDR_like_2 alcohol deh 33.6 3.1E+02 0.0067 27.2 9.8 88 389-491 144-238 (309)
422 cd08297 CAD3 Cinnamyl alcohol 32.9 2.2E+02 0.0048 29.5 8.9 90 389-491 165-265 (341)
423 COG0373 HemA Glutamyl-tRNA red 32.8 1.4E+02 0.0029 33.5 7.4 68 389-461 177-246 (414)
424 PRK10499 PTS system N,N'-diace 32.5 2.7E+02 0.0058 25.0 8.1 98 392-514 5-102 (106)
425 PF03686 UPF0146: Uncharacteri 32.3 1.3E+02 0.0029 28.2 6.2 83 390-490 14-101 (127)
426 cd08266 Zn_ADH_like1 Alcohol d 32.1 2.1E+02 0.0045 29.1 8.4 90 389-491 166-265 (342)
427 cd08264 Zn_ADH_like2 Alcohol d 32.0 1.5E+02 0.0032 30.5 7.4 84 389-492 162-254 (325)
428 PTZ00354 alcohol dehydrogenase 31.9 2.5E+02 0.0055 28.6 9.1 90 389-491 140-240 (334)
429 PLN02494 adenosylhomocysteinas 31.7 1.1E+02 0.0023 34.9 6.5 98 374-492 241-342 (477)
430 PRK08306 dipicolinate synthase 31.0 1.2E+02 0.0027 31.9 6.6 86 389-490 151-240 (296)
431 cd08258 Zn_ADH4 Alcohol dehydr 31.0 2.7E+02 0.0059 28.7 9.1 34 452-492 232-265 (306)
432 PRK09422 ethanol-active dehydr 29.9 1.8E+02 0.004 30.0 7.7 91 388-491 161-261 (338)
433 PRK07806 short chain dehydroge 29.9 3.3E+02 0.0071 26.7 9.2 20 472-491 115-134 (248)
434 cd08256 Zn_ADH2 Alcohol dehydr 29.1 3.3E+02 0.0071 28.5 9.5 90 389-491 174-274 (350)
435 PRK07502 cyclohexadienyl dehyd 28.7 2.1E+02 0.0045 30.0 7.8 87 390-489 6-98 (307)
436 cd08262 Zn_ADH8 Alcohol dehydr 28.6 3E+02 0.0066 28.4 9.1 33 452-491 232-264 (341)
437 cd08269 Zn_ADH9 Alcohol dehydr 28.5 3.6E+02 0.0077 27.2 9.4 34 452-492 197-230 (312)
438 COG1987 FliQ Flagellar biosynt 28.4 40 0.00086 29.7 1.9 16 24-39 56-71 (89)
439 cd05286 QOR2 Quinone oxidoredu 28.4 2.9E+02 0.0062 27.5 8.6 89 389-491 136-235 (320)
440 PF14258 DUF4350: Domain of un 28.2 2.2E+02 0.0048 22.9 6.3 60 426-490 10-69 (70)
441 COG3414 SgaB Phosphotransferas 27.8 2.1E+02 0.0045 25.3 6.4 55 392-461 3-57 (93)
442 cd05282 ETR_like 2-enoyl thioe 27.7 2.1E+02 0.0046 29.1 7.6 89 389-491 138-237 (323)
443 COG2933 Predicted SAM-dependen 27.1 3.4E+02 0.0075 28.9 8.7 132 372-520 191-335 (358)
444 cd08299 alcohol_DH_class_I_II_ 26.6 2.6E+02 0.0057 29.9 8.3 92 389-492 190-293 (373)
445 cd08284 FDH_like_2 Glutathione 26.4 4.1E+02 0.0089 27.4 9.6 33 452-491 234-266 (344)
446 PF07172 GRP: Glycine rich pro 26.3 29 0.00062 30.9 0.7 15 25-39 6-20 (95)
447 PF13800 Sigma_reg_N: Sigma fa 26.2 34 0.00074 29.9 1.2 24 18-41 13-36 (96)
448 cd05280 MDR_yhdh_yhfp Yhdh and 25.4 2.6E+02 0.0056 28.5 7.7 89 390-492 147-244 (325)
449 cd05288 PGDH Prostaglandin deh 25.2 4.1E+02 0.0089 27.1 9.2 88 389-491 145-244 (329)
450 cd08292 ETR_like_2 2-enoyl thi 25.0 2.8E+02 0.006 28.3 7.9 89 389-491 139-238 (324)
451 COG1893 ApbA Ketopantoate redu 24.6 4E+02 0.0086 28.3 9.1 91 391-490 1-100 (307)
452 COG5379 BtaA S-adenosylmethion 24.4 1.4E+02 0.0031 32.1 5.5 49 389-437 63-113 (414)
453 COG5353 Uncharacterized protei 24.2 50 0.0011 31.8 2.0 26 24-53 13-38 (161)
454 COG0275 Predicted S-adenosylme 24.0 3.6E+02 0.0077 29.1 8.4 40 388-427 22-66 (314)
455 COG0771 MurD UDP-N-acetylmuram 23.9 3.6E+02 0.0077 30.6 8.8 73 390-467 7-83 (448)
456 cd08282 PFDH_like Pseudomonas 23.6 3.7E+02 0.008 28.7 8.7 96 389-491 176-285 (375)
457 PF11599 AviRa: RRNA methyltra 23.4 1.4E+02 0.003 30.9 5.0 39 388-426 50-94 (246)
458 PF01558 POR: Pyruvate ferredo 23.1 1E+02 0.0023 29.3 4.0 37 447-492 50-87 (173)
459 COG4889 Predicted helicase [Ge 23.1 3.9E+02 0.0085 33.2 9.1 96 394-492 185-287 (1518)
460 KOG0821 Predicted ribosomal RN 23.1 7.6E+02 0.016 25.8 10.1 50 373-426 38-90 (326)
461 KOG4075 Cytochrome c oxidase, 22.8 66 0.0014 31.5 2.5 28 12-39 92-122 (167)
462 PRK05708 2-dehydropantoate 2-r 22.4 6E+02 0.013 26.7 9.9 90 391-490 3-103 (305)
463 COG1062 AdhC Zn-dependent alco 22.3 4.3E+02 0.0093 29.1 8.7 93 388-492 184-286 (366)
464 PRK06522 2-dehydropantoate 2-r 22.0 5.9E+02 0.013 26.0 9.6 90 392-491 2-100 (304)
465 PF11253 DUF3052: Protein of u 21.9 6.8E+02 0.015 23.6 8.9 66 451-523 43-110 (127)
466 cd08291 ETR_like_1 2-enoyl thi 21.9 4.8E+02 0.01 26.9 9.0 88 390-491 143-242 (324)
467 cd08267 MDR1 Medium chain dehy 21.5 5.7E+02 0.012 25.7 9.3 91 389-491 143-240 (319)
468 cd08290 ETR 2-enoyl thioester 21.2 4.2E+02 0.0091 27.3 8.4 94 389-491 146-251 (341)
469 KOG3924 Putative protein methy 20.9 4.3E+02 0.0093 29.6 8.4 103 388-492 191-309 (419)
470 PTZ00075 Adenosylhomocysteinas 20.8 1.3E+02 0.0028 34.2 4.7 82 389-491 253-341 (476)
471 TIGR02817 adh_fam_1 zinc-bindi 20.7 4E+02 0.0088 27.3 8.1 89 390-490 149-246 (336)
472 PRK07066 3-hydroxybutyryl-CoA 20.6 9.1E+02 0.02 25.9 10.9 94 390-488 7-116 (321)
473 cd08276 MDR7 Medium chain dehy 20.5 5.9E+02 0.013 25.8 9.3 90 389-491 160-259 (336)
474 PF08351 DUF1726: Domain of un 20.3 1.2E+02 0.0025 26.7 3.4 39 452-494 10-48 (92)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=4.2e-79 Score=655.81 Aligned_cols=315 Identities=59% Similarity=1.120 Sum_probs=302.2
Q ss_pred CccCCCCHHHHHHhcccccccccccCCCCC--CCCCCccCCCCCcccCCCCcchhhhhhhcCCCchhhhhhhcccchhhh
Q 007641 275 DFIPCLDNLQAIKKLRSTKHYEHRERHCPE--EPPTCLVPLPEGYKRSIEWPTSREKIWYYNVPHTKLAKIKGHQNWVKV 352 (595)
Q Consensus 275 ~~~pc~d~~~~~~~~~~~~~~~~~erhCp~--~~~~Clvp~P~~Yk~P~~wP~srd~iW~~Nvp~~~La~~k~~q~W~~~ 352 (595)
|||||+|+.+++++++++.+|+|||||||+ ++++||||+|++|+.||+||+||+++||+|+||++|+.+|+.|+|+++
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~ 80 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRV 80 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceee
Confidence 799999999999998899999999999997 899999999999999999999999999999999999999999999999
Q ss_pred cCceeecCCCCccccCchHHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhCCcEEEeCCchhHHHHHHHHHHH
Q 007641 353 TGEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALE 432 (595)
Q Consensus 353 ~g~~~~Fpggg~~F~~ga~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r~V~giDisp~di~~aqvq~A~e 432 (595)
.|+++.||||+++|.+|+.+|+++|.++++.+.+++..+++||||||+|+|+++|+.++|++|.+++.+.+++|+|+|++
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence 99999999999999999999999999999987777889999999999999999999999999999999999999999999
Q ss_pred cCCCeeEeecCCCCCCCCCCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeCCCCC-cCchhHHHHHHHHHH
Q 007641 433 RGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQ-KLPEDVEIWNAMSQL 511 (595)
Q Consensus 433 rgi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~-~l~e~i~~w~~le~L 511 (595)
||+++++.+++.++||||+++||+|||++|++.|+.+.+.+|.+++|+|||||||+++.||+|. ...+....|..|+.+
T Consensus 161 RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l 240 (506)
T PF03141_consen 161 RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDL 240 (506)
T ss_pred cCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998899999999999999999999999994 445667789999999
Q ss_pred HHHcCCEEEEEeecccCceEEEEEEeCCChhHHhhhcC-CCCCCcCCCCCCCCccccccccccccCCccccccCCcCCCC
Q 007641 512 IKAMCWELVSISKDTINKVGIAVYRKPTSNECYEKRSQ-QQPPVCLGSDDPNAAWHVPLQACMHKVPEESLERGSQWPEQ 590 (595)
Q Consensus 512 ak~~Gw~~v~~~~~~l~~~giaI~~KP~~~~Cy~~r~~-~~p~lC~~~~d~d~aWY~~L~~Ci~~~p~~~~~~~~~~~~~ 590 (595)
++++||+++..+.+ ++||+||.++.||.+|+. ..|+||...++++++||++|++|||++|++....++.|+++
T Consensus 241 ~~~lCW~~va~~~~------~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~ 314 (506)
T PF03141_consen 241 AKSLCWKKVAEKGD------TAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPK 314 (506)
T ss_pred HHHHHHHHheeeCC------EEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCC
Confidence 99999999999877 799999999999999886 78999998899999999999999999999987889999999
Q ss_pred CCCCC
Q 007641 591 WPARL 595 (595)
Q Consensus 591 wp~rl 595 (595)
||+||
T Consensus 315 WP~RL 319 (506)
T PF03141_consen 315 WPERL 319 (506)
T ss_pred Chhhh
Confidence 99998
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.75 E-value=1.3e-17 Score=168.57 Aligned_cols=151 Identities=25% Similarity=0.292 Sum_probs=111.6
Q ss_pred HHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCC
Q 007641 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL 447 (595)
Q Consensus 372 ~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~L 447 (595)
.|.+.+...+.. .++.+|||||||||.++..+++. .|+++|+++.|+..++.+........+.+.+++++.|
T Consensus 38 ~Wr~~~i~~~~~----~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L 113 (238)
T COG2226 38 LWRRALISLLGI----KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL 113 (238)
T ss_pred HHHHHHHHhhCC----CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC
Confidence 344555544432 26899999999999999999985 7999999999888776443332222366788889999
Q ss_pred CCCCCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeCCC--------------------------------C
Q 007641 448 PFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPV--------------------------------Y 495 (595)
Q Consensus 448 Pfpd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~--------------------------------~ 495 (595)
||+|++||+|.+++ .+.+..+...+|+|++|||||||++++..... |
T Consensus 114 Pf~D~sFD~vt~~f-glrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y 192 (238)
T COG2226 114 PFPDNSFDAVTISF-GLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAY 192 (238)
T ss_pred CCCCCccCEEEeee-hhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHH
Confidence 99999999999987 35555688999999999999999998874210 1
Q ss_pred CcCchhHHHH---HHHHHHHHHcCCEEEEEeeccc
Q 007641 496 QKLPEDVEIW---NAMSQLIKAMCWELVSISKDTI 527 (595)
Q Consensus 496 ~~l~e~i~~w---~~le~Lak~~Gw~~v~~~~~~l 527 (595)
.++.+.+..+ ..+..++...||..+.....++
T Consensus 193 ~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~ 227 (238)
T COG2226 193 EYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTF 227 (238)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeee
Confidence 1222222222 6788889999999888655543
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.73 E-value=7.8e-18 Score=170.02 Aligned_cols=139 Identities=27% Similarity=0.373 Sum_probs=76.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEeccc
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARC 462 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c 462 (595)
.++.+|||||||||.++..|+++ .|+++|+++.|+..++.+........+.+...+++.|||++++||+|+|+++
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fg 125 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFG 125 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhh
Confidence 35789999999999999999874 6899999999998887655544344667788889999999999999999873
Q ss_pred CcccccCHHHHHHHHHHhccCCcEEEEEeC-------------------------------CCCCcCchhHHHH---HHH
Q 007641 463 RVPWHIEGGKLLLELNRVLRPGGFFIWSAT-------------------------------PVYQKLPEDVEIW---NAM 508 (595)
Q Consensus 463 ~v~~h~d~~~lL~El~RvLKPGG~Lvis~p-------------------------------p~~~~l~e~i~~w---~~l 508 (595)
++...+...+|+|++|+|||||+|+|... ..|.++++.+..| ..+
T Consensus 126 -lrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~ 204 (233)
T PF01209_consen 126 -LRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEEL 204 (233)
T ss_dssp -GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH------------------------------------
T ss_pred -HHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeecccccccccccccccccccccccccccccccccc
Confidence 44455889999999999999999998731 1245566666655 677
Q ss_pred HHHHHHcCCEEEEEeeccc
Q 007641 509 SQLIKAMCWELVSISKDTI 527 (595)
Q Consensus 509 e~Lak~~Gw~~v~~~~~~l 527 (595)
.++++++||..+..+..++
T Consensus 205 ~~~l~~~Gf~~v~~~~~~~ 223 (233)
T PF01209_consen 205 KELLEEAGFKNVEYRPLTF 223 (233)
T ss_dssp -------------------
T ss_pred ccccccccccccccccccc
Confidence 7888999999877765543
No 4
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.65 E-value=5.8e-15 Score=151.25 Aligned_cols=138 Identities=19% Similarity=0.217 Sum_probs=100.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHH--HcCC-CeeEeecCCCCCCCCCCceeEEEe
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFAL--ERGI-PAISAVMGTERLPFPGIVFDAVHC 459 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~--ergi-~~~~~v~d~~~LPfpd~sFDlV~~ 459 (595)
.++.+|||||||+|.++..|+.+ .|+|+|+++.|+..++.+... .... .+.+...+...+||++++||+|++
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~ 151 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM 151 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence 35789999999999999888763 699999999888777643321 1122 355677778999999999999999
Q ss_pred cccCcccccCHHHHHHHHHHhccCCcEEEEEeCCCCC------------------------------cCchhHHHH---H
Q 007641 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQ------------------------------KLPEDVEIW---N 506 (595)
Q Consensus 460 ~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~------------------------------~l~e~i~~w---~ 506 (595)
+.+ +++..++..+|.+++|+|||||+|++....... ++...+..| .
T Consensus 152 ~~~-l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~ 230 (261)
T PLN02233 152 GYG-LRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGE 230 (261)
T ss_pred ecc-cccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHH
Confidence 863 444457899999999999999999987432100 011111222 6
Q ss_pred HHHHHHHHcCCEEEEEeecc
Q 007641 507 AMSQLIKAMCWELVSISKDT 526 (595)
Q Consensus 507 ~le~Lak~~Gw~~v~~~~~~ 526 (595)
++.++++.+||..+......
T Consensus 231 el~~ll~~aGF~~~~~~~~~ 250 (261)
T PLN02233 231 ELEKLALEAGFSSAKHYEIS 250 (261)
T ss_pred HHHHHHHHCCCCEEEEEEcC
Confidence 78889999999988765543
No 5
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.58 E-value=9.4e-14 Score=138.28 Aligned_cols=145 Identities=19% Similarity=0.260 Sum_probs=103.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCC-CeeEeecCCCCCCCCCCceeEEEecc
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTERLPFPGIVFDAVHCAR 461 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi-~~~~~v~d~~~LPfpd~sFDlV~~~~ 461 (595)
.++.+|||||||+|.++..|+++ .|+|+|+++.++..++.+.+ ..++ .+.+...+...+++++++||+|++..
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVK-DAGLHNVELVHGNAMELPFDDNSFDYVTIGF 122 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-hcCCCceEEEEechhcCCCCCCCccEEEEec
Confidence 35789999999999999888763 78999999988777665443 3333 34556667778888889999999975
Q ss_pred cCcccccCHHHHHHHHHHhccCCcEEEEEeCCCCCc--------------Cc-----------------hhHHH---HHH
Q 007641 462 CRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQK--------------LP-----------------EDVEI---WNA 507 (595)
Q Consensus 462 c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~--------------l~-----------------e~i~~---w~~ 507 (595)
.+++..+...+|.++.|+|+|||+|++..+..... .+ ..+.. ...
T Consensus 123 -~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (231)
T TIGR02752 123 -GLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDE 201 (231)
T ss_pred -ccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHH
Confidence 34444577899999999999999999875421100 00 00000 156
Q ss_pred HHHHHHHcCCEEEEEeecccCceEEEE
Q 007641 508 MSQLIKAMCWELVSISKDTINKVGIAV 534 (595)
Q Consensus 508 le~Lak~~Gw~~v~~~~~~l~~~giaI 534 (595)
+..+++.+||..+......+....+.+
T Consensus 202 l~~~l~~aGf~~~~~~~~~~g~~~~~~ 228 (231)
T TIGR02752 202 LAEMFQEAGFKDVEVKSYTGGVAAMHM 228 (231)
T ss_pred HHHHHHHcCCCeeEEEEcccceEEEEE
Confidence 788999999999887776654444443
No 6
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.58 E-value=3e-14 Score=143.47 Aligned_cols=144 Identities=25% Similarity=0.238 Sum_probs=108.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----------CcEEEeCCchhHHHHHHHHHHHcCCC----eeEeecCCCCCCCCCCc
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR----------GVLTMSFAPKDEHEAQVQFALERGIP----AISAVMGTERLPFPGIV 453 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r----------~V~giDisp~di~~aqvq~A~ergi~----~~~~v~d~~~LPfpd~s 453 (595)
..+.+|||++||||.++..++++ +|+++||+|.|+..+. +.|.++++. +.+...+++.|||++.+
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgk-qRa~~~~l~~~~~~~w~~~dAE~LpFdd~s 177 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGK-QRAKKRPLKASSRVEWVEGDAEDLPFDDDS 177 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHH-HHHhhcCCCcCCceEEEeCCcccCCCCCCc
Confidence 45799999999999999888773 7999999999998887 445456543 44555689999999999
Q ss_pred eeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeCCC-------------------------------CCcCchhH
Q 007641 454 FDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPV-------------------------------YQKLPEDV 502 (595)
Q Consensus 454 FDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~-------------------------------~~~l~e~i 502 (595)
||+..+++ .+....+++..|+|++|||||||+|.+...+. |+++.+.+
T Consensus 178 ~D~yTiaf-GIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI 256 (296)
T KOG1540|consen 178 FDAYTIAF-GIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESI 256 (296)
T ss_pred ceeEEEec-ceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhh
Confidence 99999986 35556689999999999999999999874321 22333333
Q ss_pred HHH---HHHHHHHHHcCCEEEE-EeecccCceEEEEE
Q 007641 503 EIW---NAMSQLIKAMCWELVS-ISKDTINKVGIAVY 535 (595)
Q Consensus 503 ~~w---~~le~Lak~~Gw~~v~-~~~~~l~~~giaI~ 535 (595)
..+ ..+..+...+||..+. ....+ .+-++|+
T Consensus 257 ~rfp~qe~f~~miedaGF~~~~~ye~lt--~Gv~aIH 291 (296)
T KOG1540|consen 257 RRFPPQEEFASMIEDAGFSSVNGYENLT--FGVVAIH 291 (296)
T ss_pred hcCCCHHHHHHHHHHcCCccccccccce--eeeeeee
Confidence 332 6788899999999886 33332 2345554
No 7
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.57 E-value=5.1e-14 Score=144.48 Aligned_cols=165 Identities=16% Similarity=0.194 Sum_probs=110.2
Q ss_pred ccchhhhcCceeecCCCCccccCchHHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhH
Q 007641 346 HQNWVKVTGEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDE 422 (595)
Q Consensus 346 ~q~W~~~~g~~~~Fpggg~~F~~ga~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di 422 (595)
...|..+.|..+.-||| ......+...+.. .++.+|||||||+|.++.+|+.. .|+++|+++.++
T Consensus 21 ~~~~e~~~g~~~~~~gg--------~~~~~~~l~~l~l----~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~ 88 (263)
T PTZ00098 21 IKAYEFIFGEDYISSGG--------IEATTKILSDIEL----NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMV 88 (263)
T ss_pred chhHHHHhCCCCCCCCc--------hHHHHHHHHhCCC----CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHH
Confidence 35566666644433333 2223444444432 35789999999999999888763 799999998776
Q ss_pred HHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCccccc-CHHHHHHHHHHhccCCcEEEEEeCCCCC--cCc
Q 007641 423 HEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHI-EGGKLLLELNRVLRPGGFFIWSATPVYQ--KLP 499 (595)
Q Consensus 423 ~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h~-d~~~lL~El~RvLKPGG~Lvis~pp~~~--~l~ 499 (595)
..+...... ...+.+...+...+||++++||+|++..++++... +...+|++++|+|||||+|++....... ...
T Consensus 89 ~~a~~~~~~--~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~ 166 (263)
T PTZ00098 89 NIAKLRNSD--KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWD 166 (263)
T ss_pred HHHHHHcCc--CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcH
Confidence 665533221 22355666777788999999999999763333222 5689999999999999999998642211 111
Q ss_pred hhHH-----------HHHHHHHHHHHcCCEEEEEee
Q 007641 500 EDVE-----------IWNAMSQLIKAMCWELVSISK 524 (595)
Q Consensus 500 e~i~-----------~w~~le~Lak~~Gw~~v~~~~ 524 (595)
.... .-..+..+++.+||..+....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~d 202 (263)
T PTZ00098 167 EEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAKD 202 (263)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEEe
Confidence 1110 115788899999999887654
No 8
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.57 E-value=2.8e-14 Score=150.57 Aligned_cols=134 Identities=19% Similarity=0.224 Sum_probs=100.9
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCC--CeeEeecCCCCCCCCCCceeEEEecccCc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi--~~~~~v~d~~~LPfpd~sFDlV~~~~c~v 464 (595)
++.+|||||||+|.++..|++. .|+|+|+++.++..++... ...+. .+.+...+++.+|+++++||+|+|.. +
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~-~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~--v 207 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHA-DMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLE--V 207 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH-HhcCcccceeEEecCHHHhhhccCCCCEEEEhh--H
Confidence 4679999999999999999885 7999999998887776432 22222 34566666788888888999999987 5
Q ss_pred cccc-CHHHHHHHHHHhccCCcEEEEEeCCCC---------------CcCchhHHHH------HHHHHHHHHcCCEEEEE
Q 007641 465 PWHI-EGGKLLLELNRVLRPGGFFIWSATPVY---------------QKLPEDVEIW------NAMSQLIKAMCWELVSI 522 (595)
Q Consensus 465 ~~h~-d~~~lL~El~RvLKPGG~Lvis~pp~~---------------~~l~e~i~~w------~~le~Lak~~Gw~~v~~ 522 (595)
++|+ ++..+|.++.|+|||||+|+|...... ..++...+.| .++..+++..||.++..
T Consensus 208 LeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 208 IEHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred HHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 5555 789999999999999999999864321 1122221222 78899999999998877
Q ss_pred eec
Q 007641 523 SKD 525 (595)
Q Consensus 523 ~~~ 525 (595)
...
T Consensus 288 ~G~ 290 (322)
T PLN02396 288 AGF 290 (322)
T ss_pred eee
Confidence 433
No 9
>PLN02244 tocopherol O-methyltransferase
Probab=99.57 E-value=5.7e-14 Score=149.17 Aligned_cols=135 Identities=22% Similarity=0.331 Sum_probs=99.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCC--CeeEeecCCCCCCCCCCceeEEEeccc
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLPFPGIVFDAVHCARC 462 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi--~~~~~v~d~~~LPfpd~sFDlV~~~~c 462 (595)
.++.+|||||||+|.++.+|+++ .|+|+|+++.++..+.. .+...++ .+.+.+.+...+||++++||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~-~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANA-LAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 35789999999999999999874 79999999988776653 3344444 356777788889999999999999863
Q ss_pred CcccccCHHHHHHHHHHhccCCcEEEEEeCCC--C----CcCch-h-------HH--------HHHHHHHHHHHcCCEEE
Q 007641 463 RVPWHIEGGKLLLELNRVLRPGGFFIWSATPV--Y----QKLPE-D-------VE--------IWNAMSQLIKAMCWELV 520 (595)
Q Consensus 463 ~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~--~----~~l~e-~-------i~--------~w~~le~Lak~~Gw~~v 520 (595)
+++..+...+|.+++|+|||||+|+|..... . ..+.. . .. .-..+..+++.+||..+
T Consensus 196 -~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v 274 (340)
T PLN02244 196 -GEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDI 274 (340)
T ss_pred -hhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCee
Confidence 3333477899999999999999999875321 0 00100 0 00 12577888999999988
Q ss_pred EEee
Q 007641 521 SISK 524 (595)
Q Consensus 521 ~~~~ 524 (595)
...+
T Consensus 275 ~~~d 278 (340)
T PLN02244 275 KTED 278 (340)
T ss_pred Eeee
Confidence 7643
No 10
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.56 E-value=1.4e-14 Score=134.40 Aligned_cols=135 Identities=27% Similarity=0.445 Sum_probs=95.2
Q ss_pred HHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCC
Q 007641 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFP 450 (595)
Q Consensus 373 yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfp 450 (595)
+.+.+...++. ..+..+|||||||+|.++..|+.. .|+|+|+++.++.. .............+++
T Consensus 9 ~~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~ 75 (161)
T PF13489_consen 9 YADLLERLLPR---LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----------RNVVFDNFDAQDPPFP 75 (161)
T ss_dssp HHHHHHHHHTC---TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----------TTSEEEEEECHTHHCH
T ss_pred HHHHHHHHhcc---cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----------hhhhhhhhhhhhhhcc
Confidence 44455544432 235789999999999999999886 89999999776544 2222333323455567
Q ss_pred CCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeCCCCC----------cCch---hHH--HHHHHHHHHHHc
Q 007641 451 GIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQ----------KLPE---DVE--IWNAMSQLIKAM 515 (595)
Q Consensus 451 d~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~----------~l~e---~i~--~w~~le~Lak~~ 515 (595)
+++||+|+|.. .+.|..++..+|.++.++|||||+|++..+.... .... ... .-..+..+++.+
T Consensus 76 ~~~fD~i~~~~-~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 154 (161)
T PF13489_consen 76 DGSFDLIICND-VLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQA 154 (161)
T ss_dssp SSSEEEEEEES-SGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHT
T ss_pred ccchhhHhhHH-HHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHC
Confidence 78999999986 3343447799999999999999999999875421 1000 000 117899999999
Q ss_pred CCEEEE
Q 007641 516 CWELVS 521 (595)
Q Consensus 516 Gw~~v~ 521 (595)
||+++.
T Consensus 155 G~~iv~ 160 (161)
T PF13489_consen 155 GFEIVE 160 (161)
T ss_dssp TEEEEE
T ss_pred CCEEEE
Confidence 999875
No 11
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.55 E-value=1.5e-14 Score=122.13 Aligned_cols=89 Identities=33% Similarity=0.480 Sum_probs=68.2
Q ss_pred EEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCC--CeeEeecCCCCCCCCCCceeEEEecccCccccc
Q 007641 394 LDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLPFPGIVFDAVHCARCRVPWHI 468 (595)
Q Consensus 394 LDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi--~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h~ 468 (595)
||||||+|.++..|+++ .|+++|+++.++. .++++.. ...+...+...+||++++||+|++.. +++|.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~-----~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~--~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLE-----QARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNS--VLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHH-----HHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEES--HGGGS
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHH-----HHHhcccccCchheeehHHhCcccccccccccccc--ceeec
Confidence 89999999999999986 6899999966544 4444322 23367777899999999999999986 34444
Q ss_pred -CHHHHHHHHHHhccCCcEEEE
Q 007641 469 -EGGKLLLELNRVLRPGGFFIW 489 (595)
Q Consensus 469 -d~~~lL~El~RvLKPGG~Lvi 489 (595)
+...+|++++|+|||||+|+|
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 779999999999999999986
No 12
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.54 E-value=2e-14 Score=144.25 Aligned_cols=181 Identities=23% Similarity=0.302 Sum_probs=123.6
Q ss_pred CCCchhhhhhh-cccchhhhcCceeecCCCCccccCchHHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC--
Q 007641 334 NVPHTKLAKIK-GHQNWVKVTGEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-- 410 (595)
Q Consensus 334 Nvp~~~La~~k-~~q~W~~~~g~~~~Fpggg~~F~~ga~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r-- 410 (595)
|+++..+..+. -.+.|....+.+... ..+...+..|+......-.. -++.+|||||||-|.++..|++.
T Consensus 11 ~id~~e~~~F~~la~~wwd~~g~f~~L----H~~N~~rl~~i~~~~~~~~~----l~g~~vLDvGCGgG~Lse~mAr~Ga 82 (243)
T COG2227 11 NVDYKELDKFEALASRWWDPEGEFKPL----HKINPLRLDYIREVARLRFD----LPGLRVLDVGCGGGILSEPLARLGA 82 (243)
T ss_pred cCCHHHHHHHHHHHhhhcCCCCceeee----eeeccchhhhhhhhhhcccC----CCCCeEEEecCCccHhhHHHHHCCC
Confidence 45555554443 234555555544322 23445555555444332111 25889999999999999999995
Q ss_pred CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCccccc-CHHHHHHHHHHhccCCcEEEE
Q 007641 411 GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHI-EGGKLLLELNRVLRPGGFFIW 489 (595)
Q Consensus 411 ~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h~-d~~~lL~El~RvLKPGG~Lvi 489 (595)
.|+|+|++...+..|+ ..|.+.++.+.+.....++|-...++||+|+|.. +++|. ++..+++.+.++|||||.+++
T Consensus 83 ~VtgiD~se~~I~~Ak-~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmE--VlEHv~dp~~~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 83 SVTGIDASEKPIEVAK-LHALESGVNIDYRQATVEDLASAGGQFDVVTCME--VLEHVPDPESFLRACAKLVKPGGILFL 159 (243)
T ss_pred eeEEecCChHHHHHHH-HhhhhccccccchhhhHHHHHhcCCCccEEEEhh--HHHccCCHHHHHHHHHHHcCCCcEEEE
Confidence 8999999999998887 5567778776666666677766668999999998 66665 789999999999999999999
Q ss_pred EeCCC---------------CCcCchhHHHH------HHHHHHHHHcCCEEEEEeec
Q 007641 490 SATPV---------------YQKLPEDVEIW------NAMSQLIKAMCWELVSISKD 525 (595)
Q Consensus 490 s~pp~---------------~~~l~e~i~~w------~~le~Lak~~Gw~~v~~~~~ 525 (595)
++... .+.+|...+.+ .++..++...+|........
T Consensus 160 STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~ 216 (243)
T COG2227 160 STINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGL 216 (243)
T ss_pred eccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecce
Confidence 96542 23344444444 45555555667776655433
No 13
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.48 E-value=1.1e-12 Score=132.62 Aligned_cols=98 Identities=27% Similarity=0.416 Sum_probs=79.6
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCccc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~ 466 (595)
+..+|||||||+|.++..|+.. .|+++|+++.++.. ++.+.....+...+...+|+++++||+|+++. .++|
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~-----a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~-~l~~ 115 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQ-----ARQKDAADHYLAGDIESLPLATATFDLAWSNL-AVQW 115 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHH-----HHhhCCCCCEEEcCcccCcCCCCcEEEEEECc-hhhh
Confidence 4678999999999999988874 79999999766544 44443333456677888999999999999986 4566
Q ss_pred ccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 467 HIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 467 h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
..++..+|.++.|+|||||+|+++..
T Consensus 116 ~~d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 116 CGNLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred cCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 67889999999999999999999854
No 14
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.47 E-value=7.7e-13 Score=135.46 Aligned_cols=133 Identities=21% Similarity=0.243 Sum_probs=96.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCCCCCCCCceeEEEeccc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCARC 462 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~LPfpd~sFDlV~~~~c 462 (595)
++.+|||||||+|.++..++.. .|+++|+++.++..++... ...++. +.+...+...+|+++++||+|++..
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~-~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~- 154 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANA-RKAGYTNVEFRLGEIEALPVADNSVDVIISNC- 154 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHH-HHcCCCCEEEEEcchhhCCCCCCceeEEEEcC-
Confidence 5789999999999877665552 5999999998887776443 334443 4455567788899889999999874
Q ss_pred CcccccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchh----HH----------HHHHHHHHHHHcCCEEEEEe
Q 007641 463 RVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPED----VE----------IWNAMSQLIKAMCWELVSIS 523 (595)
Q Consensus 463 ~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~----i~----------~w~~le~Lak~~Gw~~v~~~ 523 (595)
.+++..+...+|.+++|+|||||+|++........++.. .. ....+..+++..||..+...
T Consensus 155 v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~ 229 (272)
T PRK11873 155 VINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQ 229 (272)
T ss_pred cccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEE
Confidence 455555778999999999999999999754322222211 11 12567888999999987653
No 15
>PRK05785 hypothetical protein; Provisional
Probab=99.46 E-value=1.1e-12 Score=131.82 Aligned_cols=128 Identities=19% Similarity=0.160 Sum_probs=91.0
Q ss_pred CCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCccc
Q 007641 390 TRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~ 466 (595)
+.+|||||||+|.++..|+++ .|+|+|+++.|+..+. .+. .....+.+.+||++++||+|+++. .+++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~-----~~~---~~~~~d~~~lp~~d~sfD~v~~~~-~l~~ 122 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNL-----VAD---DKVVGSFEALPFRDKSFDVVMSSF-ALHA 122 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHH-----hcc---ceEEechhhCCCCCCCEEEEEecC-hhhc
Confidence 679999999999999999875 7999999988766554 222 234567788999999999999987 3444
Q ss_pred ccCHHHHHHHHHHhccCCcEEE-EEeCC----------------------------CCCcCchhHHHH---HHHHHHHHH
Q 007641 467 HIEGGKLLLELNRVLRPGGFFI-WSATP----------------------------VYQKLPEDVEIW---NAMSQLIKA 514 (595)
Q Consensus 467 h~d~~~lL~El~RvLKPGG~Lv-is~pp----------------------------~~~~l~e~i~~w---~~le~Lak~ 514 (595)
..++..+|++++|+|||.+.++ +..|. .|.+++..+..| ..+.++++.
T Consensus 123 ~~d~~~~l~e~~RvLkp~~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~ 202 (226)
T PRK05785 123 SDNIEKVIAEFTRVSRKQVGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEK 202 (226)
T ss_pred cCCHHHHHHHHHHHhcCceEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4588999999999999954233 22221 123344444444 677788888
Q ss_pred cCCEEEEEeeccc
Q 007641 515 MCWELVSISKDTI 527 (595)
Q Consensus 515 ~Gw~~v~~~~~~l 527 (595)
.+ ..+..+..++
T Consensus 203 ~~-~~~~~~~~~~ 214 (226)
T PRK05785 203 YA-DIKVYEERGL 214 (226)
T ss_pred Hh-CceEEEEccc
Confidence 63 5466655554
No 16
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.46 E-value=2.4e-12 Score=126.21 Aligned_cols=123 Identities=23% Similarity=0.137 Sum_probs=93.9
Q ss_pred CCCEEEEECCCCchhHHHHhh----CCcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCCCCCCCCceeEEEecccC
Q 007641 389 RTRVVLDVGCGVASFGGFLFD----RGVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCARCR 463 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~----r~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~LPfpd~sFDlV~~~~c~ 463 (595)
++.+|||||||+|.++..++. ..|+++|+++.++..++.. +...+++ +.+...+...++. .++||+|++..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~-~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~-- 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREV-AAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA-- 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHH-HHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc--
Confidence 478999999999999988875 2799999999988877644 3444554 5556666666766 67899999964
Q ss_pred cccccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEEeeccc
Q 007641 464 VPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKDTI 527 (595)
Q Consensus 464 v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~~~~~l 527 (595)
+ .+...++..++++|||||+|++.... ..-..+..++...||.+......++
T Consensus 121 ~---~~~~~~l~~~~~~LkpGG~lv~~~~~---------~~~~~l~~~~~~~~~~~~~~~~~~~ 172 (187)
T PRK00107 121 V---ASLSDLVELCLPLLKPGGRFLALKGR---------DPEEEIAELPKALGGKVEEVIELTL 172 (187)
T ss_pred c---cCHHHHHHHHHHhcCCCeEEEEEeCC---------ChHHHHHHHHHhcCceEeeeEEEec
Confidence 2 25678999999999999999988643 1235678888889999776654443
No 17
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.46 E-value=1e-12 Score=133.59 Aligned_cols=95 Identities=25% Similarity=0.389 Sum_probs=74.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v 464 (595)
++.+|||||||+|.++..|+.+ .|+|+|+++.++.. |+++++ .+...+...++ ++++||+|+|+. .+
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~-----a~~~~~--~~~~~d~~~~~-~~~~fD~v~~~~-~l 99 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAA-----ARERGV--DARTGDVRDWK-PKPDTDVVVSNA-AL 99 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHH-----HHhcCC--cEEEcChhhCC-CCCCceEEEEeh-hh
Confidence 5789999999999999999874 79999999776544 444544 34556666664 567999999986 34
Q ss_pred ccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 465 PWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 465 ~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
+|..++..+|++++|+|||||+|++..+
T Consensus 100 ~~~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 100 QWVPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred hhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 5555789999999999999999998753
No 18
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.45 E-value=2.2e-12 Score=142.33 Aligned_cols=134 Identities=19% Similarity=0.239 Sum_probs=97.9
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCcc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~ 465 (595)
++.+|||||||+|.++..|+.+ .|+|+|+++.++..+..+. ......+.+...+...+++++++||+|+|..+ ++
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~-~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~-l~ 343 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERA-IGRKCSVEFEVADCTKKTYPDNSFDVIYSRDT-IL 343 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHh-hcCCCceEEEEcCcccCCCCCCCEEEEEECCc-cc
Confidence 5789999999999999888874 7999999988776665332 22233456667777888888899999999863 44
Q ss_pred cccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCch-h-----------HHHHHHHHHHHHHcCCEEEEEee
Q 007641 466 WHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPE-D-----------VEIWNAMSQLIKAMCWELVSISK 524 (595)
Q Consensus 466 ~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e-~-----------i~~w~~le~Lak~~Gw~~v~~~~ 524 (595)
|..++..+|.+++|+|||||+|++.....-...+. . ...-..+.++++.+||..+....
T Consensus 344 h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d 414 (475)
T PLN02336 344 HIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAED 414 (475)
T ss_pred ccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeeec
Confidence 44578999999999999999999985422111000 0 01125678899999999875543
No 19
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.44 E-value=1.7e-12 Score=137.06 Aligned_cols=144 Identities=21% Similarity=0.186 Sum_probs=98.4
Q ss_pred HHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHH-cCCCeeEeecCCCCCCCC
Q 007641 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALE-RGIPAISAVMGTERLPFP 450 (595)
Q Consensus 375 d~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~e-rgi~~~~~v~d~~~LPfp 450 (595)
+.+...+.. ..+++|||||||+|.++..|+.. .|+|+|+++.++..+....... ....+.+...+...+|+
T Consensus 112 ~~l~~~l~~----l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~- 186 (322)
T PRK15068 112 DRVLPHLSP----LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA- 186 (322)
T ss_pred HHHHHhhCC----CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-
Confidence 344445543 24689999999999999999875 5999999987765432211111 12345666777888888
Q ss_pred CCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeCCCC-----CcCchhH-----H-----HHHHHHHHHHHc
Q 007641 451 GIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVY-----QKLPEDV-----E-----IWNAMSQLIKAM 515 (595)
Q Consensus 451 d~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~-----~~l~e~i-----~-----~w~~le~Lak~~ 515 (595)
++.||+|+|.. .++|..++..+|++++++|+|||.|++....+. ...+... . .-..+..++.++
T Consensus 187 ~~~FD~V~s~~-vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~a 265 (322)
T PRK15068 187 LKAFDTVFSMG-VLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERA 265 (322)
T ss_pred cCCcCEEEECC-hhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHc
Confidence 78899999975 233334788999999999999999998632110 0011100 0 125788999999
Q ss_pred CCEEEEEee
Q 007641 516 CWELVSISK 524 (595)
Q Consensus 516 Gw~~v~~~~ 524 (595)
||..+....
T Consensus 266 GF~~i~~~~ 274 (322)
T PRK15068 266 GFKDVRIVD 274 (322)
T ss_pred CCceEEEEe
Confidence 999887643
No 20
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.44 E-value=5.9e-13 Score=117.15 Aligned_cols=102 Identities=24% Similarity=0.255 Sum_probs=76.5
Q ss_pred CCCEEEEECCCCchhHHHHhh--C--CcEEEeCCchhHHHHHHHHHHHc-CCCeeEeecCC-CCCCCCCCceeEEEecc-
Q 007641 389 RTRVVLDVGCGVASFGGFLFD--R--GVLTMSFAPKDEHEAQVQFALER-GIPAISAVMGT-ERLPFPGIVFDAVHCAR- 461 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~--r--~V~giDisp~di~~aqvq~A~er-gi~~~~~v~d~-~~LPfpd~sFDlV~~~~- 461 (595)
|+.+|||||||+|.++.+|++ . .|+|+|+++.++..++.+..... ...+.+...+. ....+. ..||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCC
Confidence 467999999999999999998 2 89999999999988876663433 34455666666 333333 5699999986
Q ss_pred cC--cccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 462 CR--VPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 462 c~--v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
+. ++.+.+...+|..+.+.|+|||+|+|..
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 21 1111244789999999999999999974
No 21
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.43 E-value=1.2e-12 Score=133.12 Aligned_cols=132 Identities=18% Similarity=0.170 Sum_probs=95.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCC--eeEeecCCCCC-CCCCCceeEEEecccC
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERL-PFPGIVFDAVHCARCR 463 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~--~~~~v~d~~~L-Pfpd~sFDlV~~~~c~ 463 (595)
++.+|||||||+|.++..|+.+ .|+++|+++.++..++.. +...++. +.+...+...+ ++++++||+|+|..
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~-~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~-- 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQA-AEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA-- 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh--
Confidence 4679999999999999999986 799999999988877644 3344442 34555555555 36678999999986
Q ss_pred cccc-cCHHHHHHHHHHhccCCcEEEEEeCCCCC------------c----C---------chhHHHHHHHHHHHHHcCC
Q 007641 464 VPWH-IEGGKLLLELNRVLRPGGFFIWSATPVYQ------------K----L---------PEDVEIWNAMSQLIKAMCW 517 (595)
Q Consensus 464 v~~h-~d~~~lL~El~RvLKPGG~Lvis~pp~~~------------~----l---------~e~i~~w~~le~Lak~~Gw 517 (595)
+++| .++..+|.++.|+|||||+|++....... . + +.....-..+..+++.+||
T Consensus 121 vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf 200 (255)
T PRK11036 121 VLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGW 200 (255)
T ss_pred HHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCC
Confidence 4344 47889999999999999999886432110 0 0 0000112678888999999
Q ss_pred EEEEEe
Q 007641 518 ELVSIS 523 (595)
Q Consensus 518 ~~v~~~ 523 (595)
.++...
T Consensus 201 ~~~~~~ 206 (255)
T PRK11036 201 QIMGKT 206 (255)
T ss_pred eEeeee
Confidence 988654
No 22
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.42 E-value=2.7e-12 Score=126.19 Aligned_cols=98 Identities=18% Similarity=0.270 Sum_probs=75.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCCCCCCCCceeEEEecccCcc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCARCRVP 465 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~LPfpd~sFDlV~~~~c~v~ 465 (595)
+..+|||||||+|.++.+|+++ .|+|+|+++.++..++... ...++. +.+.+.+...++++ ..||+|+|..+ +
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~-~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~--~ 105 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIK-AAENLDNLHTAVVDLNNLTFD-GEYDFILSTVV--L 105 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-HHcCCCcceEEecChhhCCcC-CCcCEEEEecc--h
Confidence 3579999999999999999986 7999999999887776443 344544 44555666666664 57999999863 2
Q ss_pred ccc---CHHHHHHHHHHhccCCcEEEEE
Q 007641 466 WHI---EGGKLLLELNRVLRPGGFFIWS 490 (595)
Q Consensus 466 ~h~---d~~~lL~El~RvLKPGG~Lvis 490 (595)
++. +...++.++.|+|||||++++.
T Consensus 106 ~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 106 MFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 333 3479999999999999997654
No 23
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.41 E-value=5.5e-12 Score=134.06 Aligned_cols=134 Identities=18% Similarity=0.111 Sum_probs=97.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccC
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCR 463 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~ 463 (595)
.++.+|||||||+|.++..++++ .|+++|+++.++..++.+.. ...+.+...+...+|+++++||+|++.. .
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~~~sFDvVIs~~-~ 187 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFPTDYADRYVSAG-S 187 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCCCCceeEEEEcC-h
Confidence 35679999999999998888763 69999999887766654322 1123456677788999999999999975 3
Q ss_pred cccccCHHHHHHHHHHhccCCcEEEEEeCCCCC-cCch-hHH------HHHHHHHHHHHcCCEEEEEeec
Q 007641 464 VPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQ-KLPE-DVE------IWNAMSQLIKAMCWELVSISKD 525 (595)
Q Consensus 464 v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~-~l~e-~i~------~w~~le~Lak~~Gw~~v~~~~~ 525 (595)
+++..+...+|++++|+|||||+|++..+.... +... ... ...++.++++.+||..+.....
T Consensus 188 L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i 257 (340)
T PLN02490 188 IEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRI 257 (340)
T ss_pred hhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEc
Confidence 444457789999999999999999887542211 1110 011 1267889999999999877654
No 24
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.41 E-value=5.1e-12 Score=133.11 Aligned_cols=131 Identities=18% Similarity=0.190 Sum_probs=90.8
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHH---cCCCeeEeecCCCCCCCCCCceeEEEeccc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALE---RGIPAISAVMGTERLPFPGIVFDAVHCARC 462 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~e---rgi~~~~~v~d~~~LPfpd~sFDlV~~~~c 462 (595)
++++|||||||+|.++..++.. .|+|+|+++.++..+. .++. ....+.+...+...+|+. .+||+|+|..+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~--~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gv 197 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFE--AVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGV 197 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHH--HHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcch
Confidence 4789999999999998888775 5899999987765432 1211 122344555667777764 47999999862
Q ss_pred CcccccCHHHHHHHHHHhccCCcEEEEEeCCCCC----c-CchhH-----H-----HHHHHHHHHHHcCCEEEEEe
Q 007641 463 RVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQ----K-LPEDV-----E-----IWNAMSQLIKAMCWELVSIS 523 (595)
Q Consensus 463 ~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~----~-l~e~i-----~-----~w~~le~Lak~~Gw~~v~~~ 523 (595)
++|..++..+|.+++|+|||||.|++....+.. . .+... . .-..+..+++++||..+...
T Consensus 198 -L~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~ 272 (314)
T TIGR00452 198 -LYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRIL 272 (314)
T ss_pred -hhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEE
Confidence 333347889999999999999999986422110 0 01100 0 12678889999999988654
No 25
>PRK08317 hypothetical protein; Provisional
Probab=99.39 E-value=1.1e-11 Score=121.95 Aligned_cols=148 Identities=24% Similarity=0.291 Sum_probs=101.6
Q ss_pred HHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCC
Q 007641 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER 446 (595)
Q Consensus 372 ~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~ 446 (595)
.|.+.+...+.. .++.+|||||||+|.++..++.+ .|+++|+++.++..++.+ .......+.+...+...
T Consensus 6 ~~~~~~~~~~~~----~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~~~~~~~~~~~d~~~ 80 (241)
T PRK08317 6 RYRARTFELLAV----QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAGLGPNVEFVRGDADG 80 (241)
T ss_pred HHHHHHHHHcCC----CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhCCCCceEEEeccccc
Confidence 344445444442 35789999999999999888763 699999998776655433 11123345556667777
Q ss_pred CCCCCCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeCCCC----Cc-----CchhHHHH----------HH
Q 007641 447 LPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVY----QK-----LPEDVEIW----------NA 507 (595)
Q Consensus 447 LPfpd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~----~~-----l~e~i~~w----------~~ 507 (595)
++++++.||+|++..+ +.+..++..++.++.++|||||+|++..+... .. .......| ..
T Consensus 81 ~~~~~~~~D~v~~~~~-~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (241)
T PRK08317 81 LPFPDGSFDAVRSDRV-LQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRR 159 (241)
T ss_pred CCCCCCCceEEEEech-hhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHH
Confidence 8888899999999863 33344789999999999999999998764311 10 01111111 46
Q ss_pred HHHHHHHcCCEEEEEeec
Q 007641 508 MSQLIKAMCWELVSISKD 525 (595)
Q Consensus 508 le~Lak~~Gw~~v~~~~~ 525 (595)
+..+++..||..+.....
T Consensus 160 ~~~~l~~aGf~~~~~~~~ 177 (241)
T PRK08317 160 LPGLFREAGLTDIEVEPY 177 (241)
T ss_pred HHHHHHHcCCCceeEEEE
Confidence 778899999998766443
No 26
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.37 E-value=8.6e-12 Score=125.51 Aligned_cols=100 Identities=14% Similarity=0.117 Sum_probs=76.6
Q ss_pred CCCEEEEECCCCchhHHHHhhC------CcEEEeCCchhHHHHHHHHHHHc-CCCeeEeecCCCCCCCCCCceeEEEecc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR------GVLTMSFAPKDEHEAQVQFALER-GIPAISAVMGTERLPFPGIVFDAVHCAR 461 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r------~V~giDisp~di~~aqvq~A~er-gi~~~~~v~d~~~LPfpd~sFDlV~~~~ 461 (595)
++.+|||||||+|.++..|+++ .|+|+|+++.++..++.+..... ...+.+...+...++++ .||+|++..
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 5779999999999999888763 59999999998877765443221 23456667777777775 489999876
Q ss_pred cCccccc---CHHHHHHHHHHhccCCcEEEEEeC
Q 007641 462 CRVPWHI---EGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 462 c~v~~h~---d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
++++. +...+|.+++|+|+|||+|++..+
T Consensus 131 --~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 131 --TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred --chhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 33333 347899999999999999999864
No 27
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.37 E-value=3.9e-12 Score=124.86 Aligned_cols=97 Identities=15% Similarity=0.238 Sum_probs=74.8
Q ss_pred CCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCcccc
Q 007641 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWH 467 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h 467 (595)
..+|||||||+|.++.+|+++ .|+|+|+++.++..++. .+...++++.....+...++++ .+||+|+++. ++++
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~--~~~~ 106 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLD-MKARENLPLRTDAYDINAAALN-EDYDFIFSTV--VFMF 106 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHHhCCCceeEeccchhcccc-CCCCEEEEec--cccc
Confidence 569999999999999999986 79999999988877764 3445566655555555555554 5799999976 3334
Q ss_pred c---CHHHHHHHHHHhccCCcEEEEE
Q 007641 468 I---EGGKLLLELNRVLRPGGFFIWS 490 (595)
Q Consensus 468 ~---d~~~lL~El~RvLKPGG~Lvis 490 (595)
. +...++.+++|+|||||+|++.
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3 3368999999999999996654
No 28
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.37 E-value=3.5e-12 Score=119.47 Aligned_cols=102 Identities=24% Similarity=0.314 Sum_probs=81.0
Q ss_pred CCCEEEEECCCCchhHHHHhh-----CCcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCCCC--CCCCceeEEEec
Q 007641 389 RTRVVLDVGCGVASFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLP--FPGIVFDAVHCA 460 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~-----r~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~LP--fpd~sFDlV~~~ 460 (595)
.+.+|||||||+|.++..|++ ..|+|+|+++.++..+.. .+.+.+++ +.+.+.+...++ ++ +.||+|++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~-~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKK-RAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHH-HHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhc-ccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 467999999999999999993 379999999998877764 44555665 667777777777 66 889999998
Q ss_pred ccCcccccCHHHHHHHHHHhccCCcEEEEEeCC
Q 007641 461 RCRVPWHIEGGKLLLELNRVLRPGGFFIWSATP 493 (595)
Q Consensus 461 ~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp 493 (595)
. .+++..++..+|.++.++|++||.|++....
T Consensus 81 ~-~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 G-VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp S-TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred C-chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 5 3343446679999999999999999988654
No 29
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.37 E-value=1.5e-12 Score=127.71 Aligned_cols=126 Identities=25% Similarity=0.223 Sum_probs=91.6
Q ss_pred cCchHHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhh---CCcEEEeCCchhHHHHHHHHHHHcCCCee-Eeec
Q 007641 367 KNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD---RGVLTMSFAPKDEHEAQVQFALERGIPAI-SAVM 442 (595)
Q Consensus 367 ~~ga~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~---r~V~giDisp~di~~aqvq~A~ergi~~~-~~v~ 442 (595)
...+..|-..|-.-+..+........||+||||||..-.++-. ..|+++|.++.|...+...++..+...+. +.++
T Consensus 54 ne~~~~ykrelFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva 133 (252)
T KOG4300|consen 54 NEIADSYKRELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVA 133 (252)
T ss_pred HHHHHHHHHHHHhhhHHHhcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEee
Confidence 3344445444433322222122345689999999986666553 37999999999988887677666666666 6667
Q ss_pred CCCCCC-CCCCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeCC
Q 007641 443 GTERLP-FPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATP 493 (595)
Q Consensus 443 d~~~LP-fpd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp 493 (595)
+.+++| ++++++|+|+|..+ +..+.++...|.++.|+|||||++++..+.
T Consensus 134 ~ge~l~~l~d~s~DtVV~Tlv-LCSve~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 134 DGENLPQLADGSYDTVVCTLV-LCSVEDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred chhcCcccccCCeeeEEEEEE-EeccCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 789998 89999999999874 233558899999999999999999998653
No 30
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.36 E-value=2.3e-12 Score=132.55 Aligned_cols=92 Identities=27% Similarity=0.434 Sum_probs=72.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC-------CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR-------GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCAR 461 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r-------~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~ 461 (595)
...+|||||||+|.++..|+.. .|+|+|+++.++. .|.++...+.+.+.+...+||++++||+|++..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~-----~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~ 159 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIK-----YAAKRYPQVTFCVASSHRLPFADQSLDAIIRIY 159 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHH-----HHHHhCCCCeEEEeecccCCCcCCceeEEEEec
Confidence 4578999999999999888763 4799999976554 444444456677778888999999999999864
Q ss_pred cCcccccCHHHHHHHHHHhccCCcEEEEEeCC
Q 007641 462 CRVPWHIEGGKLLLELNRVLRPGGFFIWSATP 493 (595)
Q Consensus 462 c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp 493 (595)
.+ ..+.+++|+|||||+|++..+.
T Consensus 160 --~~------~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 160 --AP------CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred --CC------CCHHHHHhhccCCCEEEEEeCC
Confidence 21 3468999999999999998764
No 31
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.36 E-value=9e-12 Score=126.48 Aligned_cols=100 Identities=15% Similarity=0.161 Sum_probs=76.9
Q ss_pred CCCEEEEECCCCchhHHHHhh------CCcEEEeCCchhHHHHHHHHHHHcC-CCeeEeecCCCCCCCCCCceeEEEecc
Q 007641 389 RTRVVLDVGCGVASFGGFLFD------RGVLTMSFAPKDEHEAQVQFALERG-IPAISAVMGTERLPFPGIVFDAVHCAR 461 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~------r~V~giDisp~di~~aqvq~A~erg-i~~~~~v~d~~~LPfpd~sFDlV~~~~ 461 (595)
++.+|||||||+|.++..|++ ..|+++|+++.++..++.+.+.... ..+.+...+...+|++ .||+|+++.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~ 133 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 133 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh
Confidence 578999999999999888876 2799999999999888766544322 2355666667777765 499999876
Q ss_pred cCcccccC---HHHHHHHHHHhccCCcEEEEEeC
Q 007641 462 CRVPWHIE---GGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 462 c~v~~h~d---~~~lL~El~RvLKPGG~Lvis~p 492 (595)
++++++ ...+|.+++|+|||||.|++...
T Consensus 134 --~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 134 --TLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred --HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 344443 36899999999999999999863
No 32
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.34 E-value=9.5e-12 Score=128.70 Aligned_cols=157 Identities=18% Similarity=0.302 Sum_probs=95.3
Q ss_pred cCCCCccccCchHHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCC
Q 007641 359 FPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI 435 (595)
Q Consensus 359 Fpggg~~F~~ga~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi 435 (595)
|+.+...+.......++.+.+.+.. +++.+|||||||.|.++.+++++ .|+|+.+|+.....++ +.+.+.|+
T Consensus 36 ~~~~~~~Le~AQ~~k~~~~~~~~~l----~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~-~~~~~~gl 110 (273)
T PF02353_consen 36 FDEGDDTLEEAQERKLDLLCEKLGL----KPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYAR-ERIREAGL 110 (273)
T ss_dssp -SSTT--HHHHHHHHHHHHHTTTT------TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHH-HHHHCSTS
T ss_pred cCCchhhHHHHHHHHHHHHHHHhCC----CCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHH-HHHHhcCC
Confidence 3444444444445556666666543 57899999999999999999996 7899999876555544 33445566
Q ss_pred C--eeEeecCCCCCCCCCCceeEEEecccCccccc---CHHHHHHHHHHhccCCcEEEEEeCCC-------CCc------
Q 007641 436 P--AISAVMGTERLPFPGIVFDAVHCARCRVPWHI---EGGKLLLELNRVLRPGGFFIWSATPV-------YQK------ 497 (595)
Q Consensus 436 ~--~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h~---d~~~lL~El~RvLKPGG~Lvis~pp~-------~~~------ 497 (595)
. +.+...+...++. +||.|++.. +..|. +...++..+.|+|||||.|++..-.. +..
T Consensus 111 ~~~v~v~~~D~~~~~~---~fD~IvSi~--~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i 185 (273)
T PF02353_consen 111 EDRVEVRLQDYRDLPG---KFDRIVSIE--MFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFI 185 (273)
T ss_dssp SSTEEEEES-GGG------S-SEEEEES--EGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHH
T ss_pred CCceEEEEeeccccCC---CCCEEEEEe--chhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEE
Confidence 4 4455555566553 899999987 55665 34799999999999999998652110 000
Q ss_pred ----Cch-hHHHHHHHHHHHHHcCCEEEEEeec
Q 007641 498 ----LPE-DVEIWNAMSQLIKAMCWELVSISKD 525 (595)
Q Consensus 498 ----l~e-~i~~w~~le~Lak~~Gw~~v~~~~~ 525 (595)
.|. .+.....+...+...||++......
T Consensus 186 ~kyiFPgg~lps~~~~~~~~~~~~l~v~~~~~~ 218 (273)
T PF02353_consen 186 RKYIFPGGYLPSLSEILRAAEDAGLEVEDVENL 218 (273)
T ss_dssp HHHTSTTS---BHHHHHHHHHHTT-EEEEEEE-
T ss_pred EEeeCCCCCCCCHHHHHHHHhcCCEEEEEEEEc
Confidence 011 0111256667788999998766443
No 33
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.34 E-value=5.7e-11 Score=117.62 Aligned_cols=148 Identities=24% Similarity=0.221 Sum_probs=100.8
Q ss_pred CCCEEEEECCCCchhHHHHhh-----CCcEEEeCCchhHHHHHHHHHHHc-CCCeeEeecCCCCCCCCCCceeEEEeccc
Q 007641 389 RTRVVLDVGCGVASFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALER-GIPAISAVMGTERLPFPGIVFDAVHCARC 462 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~-----r~V~giDisp~di~~aqvq~A~er-gi~~~~~v~d~~~LPfpd~sFDlV~~~~c 462 (595)
++.+|||||||+|.++..++. ..|+++|+++.++..++.++.... ...+.+...+...++++.+.||+|++...
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 467999999999999988876 368999999887776665443321 12345566667777777789999999762
Q ss_pred CcccccCHHHHHHHHHHhccCCcEEEEEeCCCCCc--C----------------------chhH-------HH---HHHH
Q 007641 463 RVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQK--L----------------------PEDV-------EI---WNAM 508 (595)
Q Consensus 463 ~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~--l----------------------~e~i-------~~---w~~l 508 (595)
+++..+...+|..+.++|+|||+|++........ . .... .. -..+
T Consensus 131 -l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (239)
T PRK00216 131 -LRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEEL 209 (239)
T ss_pred -cccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHH
Confidence 3333477899999999999999998864321100 0 0000 00 1457
Q ss_pred HHHHHHcCCEEEEEeecccCceEEEEEEe
Q 007641 509 SQLIKAMCWELVSISKDTINKVGIAVYRK 537 (595)
Q Consensus 509 e~Lak~~Gw~~v~~~~~~l~~~giaI~~K 537 (595)
..++..+||..+........-..+.+..|
T Consensus 210 ~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 210 AAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 78999999998888765433333444444
No 34
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.33 E-value=1.8e-11 Score=124.18 Aligned_cols=97 Identities=22% Similarity=0.327 Sum_probs=74.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v 464 (595)
++.+|||||||+|.++..|+++ .|+|+|+++.++..+ +++...+.+...+...++ +..+||+|+++. .+
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a-----~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~-~l 103 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEA-----RSRLPDCQFVEADIASWQ-PPQALDLIFANA-SL 103 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHH-----HHhCCCCeEEECchhccC-CCCCccEEEEcc-Ch
Confidence 5789999999999999999874 699999997765444 333333455556665554 456899999986 34
Q ss_pred ccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 465 PWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 465 ~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
+|..+...+|.+++++|||||+|++..+
T Consensus 104 ~~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 104 QWLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred hhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 5555778999999999999999999754
No 35
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.31 E-value=3.3e-11 Score=124.53 Aligned_cols=156 Identities=15% Similarity=0.271 Sum_probs=106.6
Q ss_pred cCCCCccccCchHHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCC
Q 007641 359 FPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI 435 (595)
Q Consensus 359 Fpggg~~F~~ga~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi 435 (595)
|+.....+......-++.+.+.+.. .++.+|||||||.|.++.+++++ .|+|+++|+.....++. .++.+|+
T Consensus 46 f~~~~~tL~eAQ~~k~~~~~~kl~L----~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~-r~~~~gl 120 (283)
T COG2230 46 FEDPDMTLEEAQRAKLDLILEKLGL----KPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEK-RIAARGL 120 (283)
T ss_pred eCCCCCChHHHHHHHHHHHHHhcCC----CCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHH-HHHHcCC
Confidence 5555555555555566777776654 57999999999999999999996 78999999887766663 3455666
Q ss_pred C--eeEeecCCCCCCCCCCceeEEEecccCccccc---CHHHHHHHHHHhccCCcEEEEEeCCCCC----cCchhHH---
Q 007641 436 P--AISAVMGTERLPFPGIVFDAVHCARCRVPWHI---EGGKLLLELNRVLRPGGFFIWSATPVYQ----KLPEDVE--- 503 (595)
Q Consensus 436 ~--~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h~---d~~~lL~El~RvLKPGG~Lvis~pp~~~----~l~e~i~--- 503 (595)
. +.+...|...+. +.||.|++.. +++|. +-..+|..++++|+|||.+++-.-.... ..+.-+.
T Consensus 121 ~~~v~v~l~d~rd~~---e~fDrIvSvg--mfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yi 195 (283)
T COG2230 121 EDNVEVRLQDYRDFE---EPFDRIVSVG--MFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYI 195 (283)
T ss_pred CcccEEEeccccccc---cccceeeehh--hHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhC
Confidence 5 334444444443 4599999987 55666 3489999999999999999875322111 1111111
Q ss_pred -------HHHHHHHHHHHcCCEEEEEee
Q 007641 504 -------IWNAMSQLIKAMCWELVSISK 524 (595)
Q Consensus 504 -------~w~~le~Lak~~Gw~~v~~~~ 524 (595)
....+...+...||.+.....
T Consensus 196 FPgG~lPs~~~i~~~~~~~~~~v~~~~~ 223 (283)
T COG2230 196 FPGGELPSISEILELASEAGFVVLDVES 223 (283)
T ss_pred CCCCcCCCHHHHHHHHHhcCcEEehHhh
Confidence 115666668888988766543
No 36
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.31 E-value=1.6e-11 Score=127.52 Aligned_cols=140 Identities=23% Similarity=0.339 Sum_probs=97.8
Q ss_pred HHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHc-CCCeeEee--cCCCCCC
Q 007641 375 DFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALER-GIPAISAV--MGTERLP 448 (595)
Q Consensus 375 d~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~er-gi~~~~~v--~d~~~LP 448 (595)
++|..+++.+ .+++|||||||.|.++..|+.+ .|+|+|-++.. ..|-++++.. +....... .+.+.||
T Consensus 105 ~rl~p~l~~L----~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf--~~QF~~i~~~lg~~~~~~~lplgvE~Lp 178 (315)
T PF08003_consen 105 DRLLPHLPDL----KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLF--YLQFEAIKHFLGQDPPVFELPLGVEDLP 178 (315)
T ss_pred HHHHhhhCCc----CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHH--HHHHHHHHHHhCCCccEEEcCcchhhcc
Confidence 4466666543 4899999999999999888885 68888877543 4443443332 33332222 4678898
Q ss_pred CCCCceeEEEecccCccccc-CHHHHHHHHHHhccCCcEEEEEeCCC----------CCcCchhHHHH-----HHHHHHH
Q 007641 449 FPGIVFDAVHCARCRVPWHI-EGGKLLLELNRVLRPGGFFIWSATPV----------YQKLPEDVEIW-----NAMSQLI 512 (595)
Q Consensus 449 fpd~sFDlV~~~~c~v~~h~-d~~~lL~El~RvLKPGG~Lvis~pp~----------~~~l~e~i~~w-----~~le~La 512 (595)
. .+.||+|+|.. |++|. +|-..|.++...|+|||.||+-.-.+ ..+.......| ..|..++
T Consensus 179 ~-~~~FDtVF~MG--VLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl 255 (315)
T PF08003_consen 179 N-LGAFDTVFSMG--VLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWL 255 (315)
T ss_pred c-cCCcCEEEEee--ehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHH
Confidence 7 78999999986 55665 88999999999999999999753110 01111111222 7899999
Q ss_pred HHcCCEEEEEe
Q 007641 513 KAMCWELVSIS 523 (595)
Q Consensus 513 k~~Gw~~v~~~ 523 (595)
+++||..+...
T Consensus 256 ~r~gF~~v~~v 266 (315)
T PF08003_consen 256 ERAGFKDVRCV 266 (315)
T ss_pred HHcCCceEEEe
Confidence 99999988764
No 37
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.30 E-value=1.9e-11 Score=120.68 Aligned_cols=122 Identities=19% Similarity=0.182 Sum_probs=91.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCC-CeeEeecCC-CCCC--CCCCceeEEEec
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGT-ERLP--FPGIVFDAVHCA 460 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi-~~~~~v~d~-~~LP--fpd~sFDlV~~~ 460 (595)
+..+|||||||+|.++..|+.+ .|+++|+++.++..+..+... .++ .+.+...++ ..++ +++++||+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~-~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEE-EGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHH-cCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 4679999999999999988774 699999999988877754433 343 355666666 6666 778899999987
Q ss_pred ccCccccc--------CHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEE
Q 007641 461 RCRVPWHI--------EGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELV 520 (595)
Q Consensus 461 ~c~v~~h~--------d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v 520 (595)
++ .+|+. ....+|.+++++|||||+|+|..+. ......+...++..||...
T Consensus 119 ~~-~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~--------~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 119 FP-DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW--------EGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CC-CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC--------HHHHHHHHHHHHhCccccc
Confidence 53 23322 1368999999999999999997532 2344567777888888644
No 38
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.30 E-value=1.1e-10 Score=114.51 Aligned_cols=100 Identities=28% Similarity=0.313 Sum_probs=76.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccC
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCR 463 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~ 463 (595)
++.+|||+|||+|.++..++.. .++++|+++..+..+..+.. ....+.+...+...++++.+.||+|++.. .
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D~i~~~~-~ 115 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNSFDAVTIAF-G 115 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCcEEEEEEee-e
Confidence 5789999999999999888774 68999999776655543332 22234556666777888778999999975 2
Q ss_pred cccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 464 VPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 464 v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
+++..+...+|+.+.++|+|||+|++..
T Consensus 116 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 116 LRNVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred eCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 3334477899999999999999999864
No 39
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.30 E-value=2.6e-11 Score=119.72 Aligned_cols=128 Identities=24% Similarity=0.419 Sum_probs=88.9
Q ss_pred CCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCcc
Q 007641 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~ 465 (595)
..+|||||||+|.++..|++. .|+++|+++.++..+..... ..+.+...+...+++++++||+|++..+ ++
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~vi~~~~-l~ 109 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPLEDSSFDLIVSNLA-LQ 109 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCCCCCceeEEEEhhh-hh
Confidence 478999999999999999874 57999999766544432211 1345566777888888899999999862 34
Q ss_pred cccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHH----------HHHHHHHHHHcCCEEEEEee
Q 007641 466 WHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEI----------WNAMSQLIKAMCWELVSISK 524 (595)
Q Consensus 466 ~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~----------w~~le~Lak~~Gw~~v~~~~ 524 (595)
|..++..+|.++.++|+|||+|++..+.. ..+...... -..+..++... |..+....
T Consensus 110 ~~~~~~~~l~~~~~~L~~~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~ 176 (240)
T TIGR02072 110 WCDDLSQALSELARVLKPGGLLAFSTFGP-GTLHELRQSFGQHGLRYLSLDELKALLKNS-FELLTLEE 176 (240)
T ss_pred hccCHHHHHHHHHHHcCCCcEEEEEeCCc-cCHHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEEEE
Confidence 44478899999999999999999985422 111111111 13456667776 77655443
No 40
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.29 E-value=9.2e-11 Score=114.25 Aligned_cols=126 Identities=16% Similarity=0.100 Sum_probs=89.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCCCCCCCCceeEEEecccC
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCARCR 463 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~LPfpd~sFDlV~~~~c~ 463 (595)
++.+|||||||+|.++..|+.. .|+++|+++.++..+... +.+.++. +.+...+...++ ..+.||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~-~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-- 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREV-KAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-- 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHH-HHHhCCCCeEEEecchhhcc-ccCCccEEEehh--
Confidence 3789999999999998887752 699999999887666533 3444554 455556666654 357899999863
Q ss_pred cccccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEEeeccc
Q 007641 464 VPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKDTI 527 (595)
Q Consensus 464 v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~~~~~l 527 (595)
+. +...++..++++|+|||+|++...+ ........+.+-+...|++.+.....++
T Consensus 118 ~~---~~~~~~~~~~~~LkpgG~lvi~~~~------~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 172 (181)
T TIGR00138 118 LA---SLNVLLELTLNLLKVGGYFLAYKGK------KYLDEIEEAKRKCQVLGVEPLEVPPLTG 172 (181)
T ss_pred hh---CHHHHHHHHHHhcCCCCEEEEEcCC------CcHHHHHHHHHhhhhcCceEeeccccCC
Confidence 22 4567889999999999999987432 2223334444555668999888766654
No 41
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.29 E-value=1.9e-11 Score=121.38 Aligned_cols=175 Identities=17% Similarity=0.218 Sum_probs=106.5
Q ss_pred cccchhhhcCceeecCCCCccccCchHHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhH
Q 007641 345 GHQNWVKVTGEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDE 422 (595)
Q Consensus 345 ~~q~W~~~~g~~~~Fpggg~~F~~ga~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di 422 (595)
.++.|..+.+.+.....-......+...+...+...+.. ...++.+|||||||+|.++.+|+.+ .|+|+|+++.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i 90 (219)
T TIGR02021 13 AFQRWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPK--DPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMV 90 (219)
T ss_pred hHHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHH
Confidence 356777776653211000011112233344445555442 0124789999999999999999875 799999999988
Q ss_pred HHHHHHHHHHcCC--CeeEeecCCCCCCCCCCceeEEEecccCccccc-CHHHHHHHHHHhccCCcEEEEEeCCCCC---
Q 007641 423 HEAQVQFALERGI--PAISAVMGTERLPFPGIVFDAVHCARCRVPWHI-EGGKLLLELNRVLRPGGFFIWSATPVYQ--- 496 (595)
Q Consensus 423 ~~aqvq~A~ergi--~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h~-d~~~lL~El~RvLKPGG~Lvis~pp~~~--- 496 (595)
..++.+.. ..+. .+.+.+.+...++ ++||+|++...+.++.. +...++.++.+++++|+++.+.....+.
T Consensus 91 ~~a~~~~~-~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~ 166 (219)
T TIGR02021 91 QMARNRAQ-GRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFL 166 (219)
T ss_pred HHHHHHHH-hcCCCCceEEEECChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHH
Confidence 77765443 2332 4556666666655 78999999763222211 3468899999999988777654211100
Q ss_pred -----cCch-------hHHHHHHHHHHHHHcCCEEEEEeec
Q 007641 497 -----KLPE-------DVEIWNAMSQLIKAMCWELVSISKD 525 (595)
Q Consensus 497 -----~l~e-------~i~~w~~le~Lak~~Gw~~v~~~~~ 525 (595)
..+. ....-..+..+++.+||.++.....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~ 207 (219)
T TIGR02021 167 KMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLV 207 (219)
T ss_pred HHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecc
Confidence 0000 0001267888999999998877543
No 42
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.29 E-value=3.3e-11 Score=119.51 Aligned_cols=131 Identities=21% Similarity=0.293 Sum_probs=91.1
Q ss_pred CEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCC--eeEeecCCCCCCCCCCceeEEEecccCc
Q 007641 391 RVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 391 ~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~--~~~~v~d~~~LPfpd~sFDlV~~~~c~v 464 (595)
.+|||||||+|.++..+++. .|+|+|+++.++..+..++. ..++. +.+...+....|++ ++||+|++.. +
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~-~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~--~ 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIR-ALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFE--V 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hcCCCcceEEEecccccCCCC-CCCCEeehHH--H
Confidence 37999999999999988874 68999999887766654433 33432 34555565555665 5899999976 3
Q ss_pred cccc-CHHHHHHHHHHhccCCcEEEEEeCCC--CCcC-chh----HHHHHHHHHHHHHcCCEEEEEeec
Q 007641 465 PWHI-EGGKLLLELNRVLRPGGFFIWSATPV--YQKL-PED----VEIWNAMSQLIKAMCWELVSISKD 525 (595)
Q Consensus 465 ~~h~-d~~~lL~El~RvLKPGG~Lvis~pp~--~~~l-~e~----i~~w~~le~Lak~~Gw~~v~~~~~ 525 (595)
++|. +...+|.+++++|||||+|++..... +... ... ...-..+..++...||.++.....
T Consensus 77 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~ 145 (224)
T smart00828 77 IHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDA 145 (224)
T ss_pred HHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEEC
Confidence 3444 67899999999999999999876421 1000 000 011256777889999999876554
No 43
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.28 E-value=1.4e-10 Score=116.44 Aligned_cols=139 Identities=20% Similarity=0.276 Sum_probs=96.1
Q ss_pred HHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCC
Q 007641 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTE 445 (595)
Q Consensus 371 ~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~ 445 (595)
..++..+...+.. ...+|||+|||+|.++..++.. .|+++|+++.++..++... ...++. +.+...+..
T Consensus 74 ~~l~~~~l~~~~~-----~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~-~~~~~~~~~~~~~d~~ 147 (251)
T TIGR03534 74 EELVEAALERLKK-----GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNA-ARLGLDNVTFLQSDWF 147 (251)
T ss_pred HHHHHHHHHhccc-----CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHcCCCeEEEEECchh
Confidence 4455555554432 3568999999999999999874 7899999998887776443 344554 445555543
Q ss_pred CCCCCCCceeEEEecccCcccc----cC---------------------HHHHHHHHHHhccCCcEEEEEeCCCCCcCch
Q 007641 446 RLPFPGIVFDAVHCARCRVPWH----IE---------------------GGKLLLELNRVLRPGGFFIWSATPVYQKLPE 500 (595)
Q Consensus 446 ~LPfpd~sFDlV~~~~c~v~~h----~d---------------------~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e 500 (595)
. +++.++||+|+|+.+++... .. ...++..+.++|+|||++++....
T Consensus 148 ~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~------- 219 (251)
T TIGR03534 148 E-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY------- 219 (251)
T ss_pred c-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc-------
Confidence 3 55678999999976443211 00 126788999999999999987431
Q ss_pred hHHHHHHHHHHHHHcCCEEEEEeec
Q 007641 501 DVEIWNAMSQLIKAMCWELVSISKD 525 (595)
Q Consensus 501 ~i~~w~~le~Lak~~Gw~~v~~~~~ 525 (595)
..-..+.+++...||..+....+
T Consensus 220 --~~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 220 --DQGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred --cHHHHHHHHHHhCCCCceEEEeC
Confidence 12256778888999987766554
No 44
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.28 E-value=4.3e-12 Score=110.86 Aligned_cols=91 Identities=31% Similarity=0.502 Sum_probs=70.8
Q ss_pred EEEECCCCchhHHHHhh-------CCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCcc
Q 007641 393 VLDVGCGVASFGGFLFD-------RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (595)
Q Consensus 393 VLDIGCGtG~~a~~La~-------r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~ 465 (595)
|||||||+|..+..|+. ..++++|+++.++..+..+. ...+.++.+.+.+...+++.+++||+|+|..+.+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~-~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRF-SEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHS-HHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhc-hhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 79999999999988875 37899999998887776443 33567888888998889988899999999764333
Q ss_pred cccC---HHHHHHHHHHhccCCc
Q 007641 466 WHIE---GGKLLLELNRVLRPGG 485 (595)
Q Consensus 466 ~h~d---~~~lL~El~RvLKPGG 485 (595)
|.. ...+|+++.++|||||
T Consensus 80 -~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 -HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -GSSHHHHHHHHHHHHHTEEEEE
T ss_pred -CCCHHHHHHHHHHHHHHhCCCC
Confidence 344 3799999999999998
No 45
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.27 E-value=2.1e-10 Score=110.60 Aligned_cols=125 Identities=14% Similarity=0.111 Sum_probs=89.2
Q ss_pred CCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCcccc
Q 007641 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWH 467 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h 467 (595)
+.+|||+|||+|.++..++.+ .|+++|+++.++..++.+.. ..+..+.+...+....+ .++||+|+++.++++..
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAK-LNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCceEEEEccccccc--CCcccEEEECCCCCCCc
Confidence 568999999999999999886 58999999998877765544 33455555555554433 35899999986433221
Q ss_pred cC--------------------HHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEEeec
Q 007641 468 IE--------------------GGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKD 525 (595)
Q Consensus 468 ~d--------------------~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~~~~ 525 (595)
.. ...+|.++.|+|+|||.|++..+...+ -..+..+++..||........
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~--------~~~~~~~l~~~gf~~~~~~~~ 166 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNG--------EPDTFDKLDERGFRYEIVAER 166 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCC--------hHHHHHHHHhCCCeEEEEEEe
Confidence 10 246799999999999999987542111 246677888899987666544
No 46
>PRK04266 fibrillarin; Provisional
Probab=99.26 E-value=2.8e-10 Score=114.82 Aligned_cols=133 Identities=16% Similarity=0.179 Sum_probs=89.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCC----CCCCCCceeEEEe
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER----LPFPGIVFDAVHC 459 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~----LPfpd~sFDlV~~ 459 (595)
.++.+|||+|||+|.++.+|++. .|+++|+++.++.... +.|+.+ .++.....+... .+++ .+||+|++
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~D~i~~ 147 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEER-KNIIPILADARKPERYAHVV-EKVDVIYQ 147 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhc-CCcEEEECCCCCcchhhhcc-ccCCEEEE
Confidence 46789999999999999999885 5999999998876554 334433 234445555432 2233 46999997
Q ss_pred cccCcccccCHHHHHHHHHHhccCCcEEEEEeCCC-CCcCchhHHHHHHHHHHHHHcCCEEEEEeecc
Q 007641 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPV-YQKLPEDVEIWNAMSQLIKAMCWELVSISKDT 526 (595)
Q Consensus 460 ~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~-~~~l~e~i~~w~~le~Lak~~Gw~~v~~~~~~ 526 (595)
.. ........+|.+++|+|||||+|+|+.+-. ..........+.....+++.+||+.+......
T Consensus 148 d~---~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~ 212 (226)
T PRK04266 148 DV---AQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLE 212 (226)
T ss_pred CC---CChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 43 111122457899999999999999964311 11111222334556688999999998876653
No 47
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.25 E-value=2.3e-12 Score=111.77 Aligned_cols=92 Identities=24% Similarity=0.330 Sum_probs=55.9
Q ss_pred EEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCC--CCCCceeEEEecccCcccc
Q 007641 394 LDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP--FPGIVFDAVHCARCRVPWH 467 (595)
Q Consensus 394 LDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LP--fpd~sFDlV~~~~c~v~~h 467 (595)
||||||+|.++.+|+.+ .++++|+++.++..++.++.................+. .+.++||+|++.. +++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~--vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASN--VLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE---TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhh--hHhh
Confidence 89999999999888774 79999999999866655554433333333333322221 2226899999986 4444
Q ss_pred c-CHHHHHHHHHHhccCCcEE
Q 007641 468 I-EGGKLLLELNRVLRPGGFF 487 (595)
Q Consensus 468 ~-d~~~lL~El~RvLKPGG~L 487 (595)
. +...+|+.++++|||||+|
T Consensus 79 l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 LEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhHHHHHHHHHHHcCCCCCC
Confidence 4 7799999999999999986
No 48
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.25 E-value=2.9e-11 Score=125.48 Aligned_cols=97 Identities=14% Similarity=0.230 Sum_probs=76.0
Q ss_pred CCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCcccc
Q 007641 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWH 467 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h 467 (595)
..+|||||||+|.++.+|+.+ .|+|+|+++.++..++ +.+...++.+.+...+....++ +++||+|++.. ++++
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~-~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~--vl~~ 196 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQ-EIAEKENLNIRTGLYDINSASI-QEEYDFILSTV--VLMF 196 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHHcCCceEEEEechhcccc-cCCccEEEEcc--hhhh
Confidence 459999999999999999885 7999999998887665 4455567666666666555554 57899999986 3344
Q ss_pred cC---HHHHHHHHHHhccCCcEEEEE
Q 007641 468 IE---GGKLLLELNRVLRPGGFFIWS 490 (595)
Q Consensus 468 ~d---~~~lL~El~RvLKPGG~Lvis 490 (595)
.+ ...+|.++.|+|+|||++++.
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 43 368999999999999997765
No 49
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.25 E-value=2.3e-10 Score=116.50 Aligned_cols=128 Identities=22% Similarity=0.241 Sum_probs=88.4
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCcc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~ 465 (595)
++.+|||||||+|.++..++.. .|+++|+++.++..++.+.. ..++...+. ++..+.+||+|+++. ..
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~-~~~~~~~~~------~~~~~~~fD~Vvani--~~ 189 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAE-LNGVELNVY------LPQGDLKADVIVANI--LA 189 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHH-HcCCCceEE------EccCCCCcCEEEEcC--cH
Confidence 4789999999999988877764 59999999988877765543 334321111 222223799999864 21
Q ss_pred cccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEEeecccCceEEEEEEe
Q 007641 466 WHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKDTINKVGIAVYRK 537 (595)
Q Consensus 466 ~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~~~~~l~~~giaI~~K 537 (595)
.....++.++.++|||||+|+++... ......+...+...||.++..... .++...+++|
T Consensus 190 --~~~~~l~~~~~~~LkpgG~lilsgi~--------~~~~~~v~~~l~~~Gf~~~~~~~~--~~W~~~~~~~ 249 (250)
T PRK00517 190 --NPLLELAPDLARLLKPGGRLILSGIL--------EEQADEVLEAYEEAGFTLDEVLER--GEWVALVGKK 249 (250)
T ss_pred --HHHHHHHHHHHHhcCCCcEEEEEECc--------HhhHHHHHHHHHHCCCEEEEEEEe--CCEEEEEEEe
Confidence 12357889999999999999998532 123456778889999998776554 3444445554
No 50
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.25 E-value=6.9e-11 Score=115.83 Aligned_cols=124 Identities=19% Similarity=0.257 Sum_probs=86.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCCCC---CCCCceeEEEec
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLP---FPGIVFDAVHCA 460 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~LP---fpd~sFDlV~~~ 460 (595)
...+|||||||+|.++..|+.+ .|+|+|+++.++..+..+. ...++. +.+...++..++ +++++||.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~-~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKA-NKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHH-HHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4569999999999999999875 7999999998887776443 344444 445555554443 566799999987
Q ss_pred ccCcccccC--------HHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcC-CEEEEE
Q 007641 461 RCRVPWHIE--------GGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMC-WELVSI 522 (595)
Q Consensus 461 ~c~v~~h~d--------~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~G-w~~v~~ 522 (595)
++ .+|+.. ...+|.++.|+|||||.|++.... ...+..+...+...+ |..+..
T Consensus 95 ~p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~--------~~~~~~~~~~~~~~~~f~~~~~ 156 (194)
T TIGR00091 95 FP-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN--------EPLFEDMLKVLSENDLFENTSK 156 (194)
T ss_pred CC-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC--------HHHHHHHHHHHHhCCCeEeccc
Confidence 53 455322 157999999999999999987532 223444555555544 776543
No 51
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.23 E-value=7.5e-11 Score=115.48 Aligned_cols=127 Identities=21% Similarity=0.275 Sum_probs=91.8
Q ss_pred CCCEEEEECCCCchhHHHHhh-C--CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCcc
Q 007641 389 RTRVVLDVGCGVASFGGFLFD-R--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~-r--~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~ 465 (595)
++.+|||+|||.|.++.+|.+ + ..+|+++++ +.+..+..+|++++....+..-..|++++||.|+++. .+.
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~-----~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsq-tLQ 86 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDP-----DNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQ-TLQ 86 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCH-----HHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHh-HHH
Confidence 589999999999999999988 3 457777774 4566777899987655554432358999999999997 344
Q ss_pred cccCHHHHHHHHHHhccCCcEEEEEeCCC----------------------C-CcCchhHH--HHHHHHHHHHHcCCEEE
Q 007641 466 WHIEGGKLLLELNRVLRPGGFFIWSATPV----------------------Y-QKLPEDVE--IWNAMSQLIKAMCWELV 520 (595)
Q Consensus 466 ~h~d~~~lL~El~RvLKPGG~Lvis~pp~----------------------~-~~l~e~i~--~w~~le~Lak~~Gw~~v 520 (595)
....+..+|.||.|+ |...|++-|+. | ++.-.+++ ...+++.+.+..|++++
T Consensus 87 ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~ 163 (193)
T PF07021_consen 87 AVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIE 163 (193)
T ss_pred hHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEE
Confidence 344789999999777 55777775542 1 11112222 23899999999999988
Q ss_pred EEee
Q 007641 521 SISK 524 (595)
Q Consensus 521 ~~~~ 524 (595)
....
T Consensus 164 ~~~~ 167 (193)
T PF07021_consen 164 ERVF 167 (193)
T ss_pred EEEE
Confidence 7643
No 52
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.23 E-value=3.1e-11 Score=133.23 Aligned_cols=130 Identities=14% Similarity=0.140 Sum_probs=88.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC--CCCCCCCCceeEEEecccCc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT--ERLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~--~~LPfpd~sFDlV~~~~c~v 464 (595)
++.+|||||||+|.++..|+++ .|+|+|+++.++..+.. .......+.+...+. ..+|+++++||+|+|.. +
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~--~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~--~ 112 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES--INGHYKNVKFMCADVTSPDLNISDGSVDLIFSNW--L 112 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH--HhccCCceEEEEecccccccCCCCCCEEEEehhh--h
Confidence 4679999999999999999985 79999999887755431 111122334455554 35788889999999987 3
Q ss_pred ccccC---HHHHHHHHHHhccCCcEEEEEeCCCCCc-------CchhHHHHHHHHHHHHHcCCEEEEE
Q 007641 465 PWHIE---GGKLLLELNRVLRPGGFFIWSATPVYQK-------LPEDVEIWNAMSQLIKAMCWELVSI 522 (595)
Q Consensus 465 ~~h~d---~~~lL~El~RvLKPGG~Lvis~pp~~~~-------l~e~i~~w~~le~Lak~~Gw~~v~~ 522 (595)
.+|.. ...+|.+++|+|||||+|++........ .+........+..++..+||.....
T Consensus 113 l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 180 (475)
T PLN02336 113 LMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDG 180 (475)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCC
Confidence 33443 3689999999999999999875432211 1111111245556677777765543
No 53
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.23 E-value=5.8e-10 Score=108.23 Aligned_cols=120 Identities=14% Similarity=0.039 Sum_probs=86.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCCCCCCCCceeEEEecccC
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCARCR 463 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~LPfpd~sFDlV~~~~c~ 463 (595)
++.+|||||||+|.++..++++ .|+++|+++.++..++.+... .++. +.+...+. ..+++ ..||+|++..
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~-~~~~~i~~~~~d~-~~~~~-~~~D~v~~~~-- 105 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQR-FGCGNIDIIPGEA-PIELP-GKADAIFIGG-- 105 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-hCCCCeEEEecCc-hhhcC-cCCCEEEECC--
Confidence 5789999999999999988874 799999999888777654433 3333 33333333 23443 5799999875
Q ss_pred cccccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEEe
Q 007641 464 VPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSIS 523 (595)
Q Consensus 464 v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~~ 523 (595)
.. .....++..+.++|+|||+|++.... ......+..+++..||..+...
T Consensus 106 ~~--~~~~~~l~~~~~~Lk~gG~lv~~~~~--------~~~~~~~~~~l~~~g~~~~~~~ 155 (187)
T PRK08287 106 SG--GNLTAIIDWSLAHLHPGGRLVLTFIL--------LENLHSALAHLEKCGVSELDCV 155 (187)
T ss_pred Cc--cCHHHHHHHHHHhcCCCeEEEEEEec--------HhhHHHHHHHHHHCCCCcceEE
Confidence 22 13467899999999999999986421 2345677788999999876653
No 54
>PRK14968 putative methyltransferase; Provisional
Probab=99.22 E-value=4.5e-10 Score=107.49 Aligned_cols=127 Identities=18% Similarity=0.229 Sum_probs=89.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCC---eeEeecCCCCCCCCCCceeEEEecccC
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP---AISAVMGTERLPFPGIVFDAVHCARCR 463 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~---~~~~v~d~~~LPfpd~sFDlV~~~~c~ 463 (595)
++.+|||+|||+|.++..|+.+ .|+++|+++.++..++.+.. ..+.. +.+...+... +++...||+|+++..+
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~-~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAK-LNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPY 100 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHH-HcCCCCcceEEEeccccc-cccccCceEEEECCCc
Confidence 4679999999999999998875 89999999988777654443 33332 4455555433 4455689999987643
Q ss_pred ccccc--------------------CHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEEe
Q 007641 464 VPWHI--------------------EGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSIS 523 (595)
Q Consensus 464 v~~h~--------------------d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~~ 523 (595)
.+... ....++.++.++|||||++++..+.... ...+..++..+||.++...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~--------~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTG--------EDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCC--------HHHHHHHHHHCCCeeeeee
Confidence 32110 1246899999999999999987643221 2467788999999877654
Q ss_pred ec
Q 007641 524 KD 525 (595)
Q Consensus 524 ~~ 525 (595)
..
T Consensus 173 ~~ 174 (188)
T PRK14968 173 EE 174 (188)
T ss_pred ec
Confidence 44
No 55
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.22 E-value=1.1e-11 Score=125.84 Aligned_cols=145 Identities=21% Similarity=0.307 Sum_probs=98.4
Q ss_pred CCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHc----CCCe--eEeecCCCCCCCCCCceeEEEecc
Q 007641 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALER----GIPA--ISAVMGTERLPFPGIVFDAVHCAR 461 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~er----gi~~--~~~v~d~~~LPfpd~sFDlV~~~~ 461 (595)
+++|||||||.|.++..|++. .|+|+|++..++..|....+... ++.. .+...+.+.+- +.||+|+|+.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHH
Confidence 578999999999999999994 89999999888877765522111 1111 12222233332 3499999998
Q ss_pred cCccccc-CHHHHHHHHHHhccCCcEEEEEeCC---------C------CCcCchhHHHH------HHHHHHHHHcCCEE
Q 007641 462 CRVPWHI-EGGKLLLELNRVLRPGGFFIWSATP---------V------YQKLPEDVEIW------NAMSQLIKAMCWEL 519 (595)
Q Consensus 462 c~v~~h~-d~~~lL~El~RvLKPGG~Lvis~pp---------~------~~~l~e~i~~w------~~le~Lak~~Gw~~ 519 (595)
+.+|. ++..++..+.++|||||.|+|+.-. + .+..|.+.+.| ..+..++...++.+
T Consensus 167 --vleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v 244 (282)
T KOG1270|consen 167 --VLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQV 244 (282)
T ss_pred --HHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcch
Confidence 66676 7899999999999999999998421 1 12234444455 56777888888887
Q ss_pred EEEeecccCceE-EEEEEeCC
Q 007641 520 VSISKDTINKVG-IAVYRKPT 539 (595)
Q Consensus 520 v~~~~~~l~~~g-iaI~~KP~ 539 (595)
.......++... -..|.++.
T Consensus 245 ~~v~G~~y~p~s~~w~~~~~~ 265 (282)
T KOG1270|consen 245 NDVVGEVYNPISGQWLWSKNT 265 (282)
T ss_pred hhhhccccccccceeEecccc
Confidence 776665544332 24444443
No 56
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.22 E-value=2.2e-10 Score=114.41 Aligned_cols=145 Identities=19% Similarity=0.289 Sum_probs=97.4
Q ss_pred HHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCC-C
Q 007641 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP-F 449 (595)
Q Consensus 373 yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LP-f 449 (595)
.+.++...+.. .++.+|||||||+|.++..+++. .|+++|+++..+..++.++. ..+..+.+...+...++ .
T Consensus 36 ~~~~l~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~ 110 (233)
T PRK05134 36 RLNYIREHAGG----LFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHAL-ESGLKIDYRQTTAEELAAE 110 (233)
T ss_pred HHHHHHHhccC----CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHH-HcCCceEEEecCHHHhhhh
Confidence 34455554432 35789999999999999888875 68999999887766654433 23444445555554443 3
Q ss_pred CCCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeCCCCCc---------------Cchh---HHH---HHHH
Q 007641 450 PGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQK---------------LPED---VEI---WNAM 508 (595)
Q Consensus 450 pd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~---------------l~e~---i~~---w~~l 508 (595)
..+.||+|++... +.+..++..+|..+.++|+|||+|++..+..... .+.. ... -..+
T Consensus 111 ~~~~fD~Ii~~~~-l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (233)
T PRK05134 111 HPGQFDVVTCMEM-LEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSEL 189 (233)
T ss_pred cCCCccEEEEhhH-hhccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHH
Confidence 4578999999862 3333477899999999999999999885421100 0000 011 1467
Q ss_pred HHHHHHcCCEEEEEe
Q 007641 509 SQLIKAMCWELVSIS 523 (595)
Q Consensus 509 e~Lak~~Gw~~v~~~ 523 (595)
..++...||.++...
T Consensus 190 ~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 190 AAWLRQAGLEVQDIT 204 (233)
T ss_pred HHHHHHCCCeEeeee
Confidence 889999999988664
No 57
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.21 E-value=8.4e-11 Score=128.52 Aligned_cols=208 Identities=23% Similarity=0.405 Sum_probs=135.2
Q ss_pred Hhccccccccccc-----CCCCC----------CCCCCccCCCCC-----cccCCCCcchhhhhhhcCCCchhhhhhhcc
Q 007641 287 KKLRSTKHYEHRE-----RHCPE----------EPPTCLVPLPEG-----YKRSIEWPTSREKIWYYNVPHTKLAKIKGH 346 (595)
Q Consensus 287 ~~~~~~~~~~~~e-----rhCp~----------~~~~Clvp~P~~-----Yk~P~~wP~srd~iW~~Nvp~~~La~~k~~ 346 (595)
+|+.++.+|..|. .-|.. +-..|+.|.|.. -..+.+||+....+... |....
T Consensus 259 qKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~WP~RL~~~P~r------l~~~~-- 330 (506)
T PF03141_consen 259 QKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPKWPERLNAVPPR------LSSGS-- 330 (506)
T ss_pred eccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCCChhhhccCchh------hhcCC--
Confidence 5566666776655 34552 446899999974 66788999875544321 11100
Q ss_pred cchhhhcCceeecCCCCccccCchHHHHHHHHHhc---c-cccCCCCCCEEEEECCCCchhHHHHhhCCcEEEeCCchhH
Q 007641 347 QNWVKVTGEYLTFPGGGTQFKNGALHYIDFIQESV---P-DVAWGKRTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDE 422 (595)
Q Consensus 347 q~W~~~~g~~~~Fpggg~~F~~ga~~yid~L~~~L---~-~l~~~~~~~rVLDIGCGtG~~a~~La~r~V~giDisp~di 422 (595)
........|......+...+..+. . .+.+ ...+.|||+.+|.|.|+++|....|+.|.+.|..
T Consensus 331 -----------~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~-~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~- 397 (506)
T PF03141_consen 331 -----------IPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKW-GRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVS- 397 (506)
T ss_pred -----------cCCCCHHHHHHHHHHHHHHHHHHHHhhcccccc-cceeeeeeecccccHHHHHhccCCceEEEecccC-
Confidence 000001113333333333332222 1 1222 3588999999999999999999999999998873
Q ss_pred HHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCcccc--cCHHHHHHHHHHhccCCcEEEEEeCCCCCcCch
Q 007641 423 HEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWH--IEGGKLLLELNRVLRPGGFFIWSATPVYQKLPE 500 (595)
Q Consensus 423 ~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h--~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e 500 (595)
....+.....||+-.++... .+.+++.+++||+||+...+-.+. -+...+|.||+|+|||||++||...
T Consensus 398 ~~ntL~vIydRGLIG~yhDW-CE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~-------- 468 (506)
T PF03141_consen 398 GPNTLPVIYDRGLIGVYHDW-CEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT-------- 468 (506)
T ss_pred CCCcchhhhhcccchhccch-hhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc--------
Confidence 34445666777764333222 577787789999999987322221 2457999999999999999999743
Q ss_pred hHHHHHHHHHHHHHcCCEEEEEeec
Q 007641 501 DVEIWNAMSQLIKAMCWELVSISKD 525 (595)
Q Consensus 501 ~i~~w~~le~Lak~~Gw~~v~~~~~ 525 (595)
...-..+..+++++.|+.......
T Consensus 469 -~~vl~~v~~i~~~lrW~~~~~d~e 492 (506)
T PF03141_consen 469 -VDVLEKVKKIAKSLRWEVRIHDTE 492 (506)
T ss_pred -HHHHHHHHHHHHhCcceEEEEecC
Confidence 456688999999999997655444
No 58
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.21 E-value=1.2e-10 Score=114.58 Aligned_cols=106 Identities=21% Similarity=0.399 Sum_probs=80.5
Q ss_pred HHHhcccccCCCCCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCce
Q 007641 377 IQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVF 454 (595)
Q Consensus 377 L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sF 454 (595)
+.+.+..+ +..+|||||||.|..+.+|+++ .|+++|+++..+... .++|.+.++++.....|.....++ ..|
T Consensus 22 v~~a~~~~----~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l-~~~a~~~~l~i~~~~~Dl~~~~~~-~~y 95 (192)
T PF03848_consen 22 VLEAVPLL----KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKL-QRLAEEEGLDIRTRVADLNDFDFP-EEY 95 (192)
T ss_dssp HHHHCTTS-----SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHH-HHHHHHTT-TEEEEE-BGCCBS-T-TTE
T ss_pred HHHHHhhc----CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHH-HHHHhhcCceeEEEEecchhcccc-CCc
Confidence 44445432 3679999999999999999997 799999999887665 467888899988888887767665 679
Q ss_pred eEEEecccCcccccC---HHHHHHHHHHhccCCcEEEEE
Q 007641 455 DAVHCARCRVPWHIE---GGKLLLELNRVLRPGGFFIWS 490 (595)
Q Consensus 455 DlV~~~~c~v~~h~d---~~~lL~El~RvLKPGG~Lvis 490 (595)
|+|++.. ++.+++ ...++..|...|+|||++++.
T Consensus 96 D~I~st~--v~~fL~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 96 DFIVSTV--VFMFLQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp EEEEEES--SGGGS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CEEEEEE--EeccCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 9999864 334443 368999999999999999885
No 59
>PRK14967 putative methyltransferase; Provisional
Probab=99.20 E-value=6.8e-10 Score=110.96 Aligned_cols=123 Identities=16% Similarity=0.098 Sum_probs=85.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCcc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~ 465 (595)
++.+|||+|||+|.++..++.. .|+++|+++.++..++.+. ...++.+.+...+... .++++.||+|+++.+++.
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~-~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNA-LLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVP 113 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH-HHhCCeeEEEECchhh-hccCCCeeEEEECCCCCC
Confidence 4679999999999999988874 7899999998877666443 3345555555555433 345678999999864443
Q ss_pred cccC--------------------HHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEE
Q 007641 466 WHIE--------------------GGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVS 521 (595)
Q Consensus 466 ~h~d--------------------~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~ 521 (595)
.+.. ...++.++.++|||||+|++...... ....+..+++..||....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~--------~~~~~~~~l~~~g~~~~~ 181 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS--------GVERTLTRLSEAGLDAEV 181 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc--------CHHHHHHHHHHCCCCeEE
Confidence 2111 24578889999999999998754321 123455667778886443
No 60
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.19 E-value=3.2e-10 Score=100.81 Aligned_cols=98 Identities=19% Similarity=0.113 Sum_probs=71.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCC-CCCCCCceeEEEeccc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTER-LPFPGIVFDAVHCARC 462 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~-LPfpd~sFDlV~~~~c 462 (595)
++.+|||||||+|.++.+++++ .|+++|+++.++..+...... .++. +.+...+... ++....+||+|++..+
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARR-FGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHH-hCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence 4679999999999999999884 699999999888777644433 3333 4444444332 3333468999998652
Q ss_pred CcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 463 RVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 463 ~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
.. ....++..++|+|+|||+|++..
T Consensus 98 --~~--~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 98 --GG--LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred --ch--hHHHHHHHHHHHcCCCCEEEEEe
Confidence 11 23689999999999999999864
No 61
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.18 E-value=1.4e-10 Score=125.11 Aligned_cols=113 Identities=18% Similarity=0.277 Sum_probs=78.4
Q ss_pred HHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcC--C-CeeEeecCCCC
Q 007641 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERG--I-PAISAVMGTER 446 (595)
Q Consensus 374 id~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~erg--i-~~~~~v~d~~~ 446 (595)
.+++.+.++. ....+|||||||+|.++..++++ .|+++|+++.++..++.+.+.... . .+.+...+...
T Consensus 217 trllL~~lp~----~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~ 292 (378)
T PRK15001 217 ARFFMQHLPE----NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS 292 (378)
T ss_pred HHHHHHhCCc----ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence 4456666654 22469999999999999999875 799999999888887766543321 1 23334333321
Q ss_pred CCCCCCceeEEEecccCcccc-cC---HHHHHHHHHHhccCCcEEEEEe
Q 007641 447 LPFPGIVFDAVHCARCRVPWH-IE---GGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 447 LPfpd~sFDlV~~~~c~v~~h-~d---~~~lL~El~RvLKPGG~Lvis~ 491 (595)
.++..+||+|+|+.++..-+ .. ...+|..++++|+|||.|+|..
T Consensus 293 -~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 293 -GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred -cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 23446899999987432222 11 2578999999999999999985
No 62
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.18 E-value=3.4e-10 Score=117.81 Aligned_cols=121 Identities=17% Similarity=0.194 Sum_probs=82.9
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCcc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~ 465 (595)
++.+|||||||+|.++..++.. .|+++|+++.++..++.+... .++...........+++..+.||+|+++. +.
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~-n~~~~~~~~~~~~~~~~~~~~fDlVvan~--~~ 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAEL-NQVSDRLQVKLIYLEQPIEGKADVIVANI--LA 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH-cCCCcceEEEecccccccCCCceEEEEec--CH
Confidence 4689999999999998888764 699999999988877755443 34432221111112344567899999974 21
Q ss_pred cccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEEe
Q 007641 466 WHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSIS 523 (595)
Q Consensus 466 ~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~~ 523 (595)
.....++.++.++|||||+|+++... ......+...++.. |.++...
T Consensus 236 --~~l~~ll~~~~~~LkpgG~li~sgi~--------~~~~~~v~~~~~~~-f~~~~~~ 282 (288)
T TIGR00406 236 --EVIKELYPQFSRLVKPGGWLILSGIL--------ETQAQSVCDAYEQG-FTVVEIR 282 (288)
T ss_pred --HHHHHHHHHHHHHcCCCcEEEEEeCc--------HhHHHHHHHHHHcc-CceeeEe
Confidence 12357899999999999999998631 12335666666665 8776543
No 63
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.18 E-value=1.6e-10 Score=122.18 Aligned_cols=125 Identities=18% Similarity=0.128 Sum_probs=92.4
Q ss_pred CCCCEEEEECCCCchhHHHHhh--CCcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCCCCCCCCceeEEEecccCc
Q 007641 388 KRTRVVLDVGCGVASFGGFLFD--RGVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~--r~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~LPfpd~sFDlV~~~~c~v 464 (595)
.++.+|||+|||+|.++..++. ..|+|+|+++.++..++.+.. ..++. +.+...+...+|+++++||+|++..++-
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~-~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg 259 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLE-HYGIEDFFVKRGDATKLPLSSESVDAIATDPPYG 259 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHH-HhCCCCCeEEecchhcCCcccCCCCEEEECCCCc
Confidence 3578999999999998876655 389999999998887765543 34443 4566777888998888999999975321
Q ss_pred cc-----cc--C-HHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEEeec
Q 007641 465 PW-----HI--E-GGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKD 525 (595)
Q Consensus 465 ~~-----h~--d-~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~~~~ 525 (595)
.. +. + ...+|.++.|+|||||++++..+.. ..+..+++.+|| ++.....
T Consensus 260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~-----------~~~~~~~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR-----------IDLESLAEDAFR-VVKRFEV 316 (329)
T ss_pred CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC-----------CCHHHHHhhcCc-chheeee
Confidence 11 11 1 2689999999999999999887541 244567888999 7665443
No 64
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.17 E-value=4.8e-11 Score=114.59 Aligned_cols=101 Identities=20% Similarity=0.233 Sum_probs=72.9
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCCCCCCCCceeEEEecccC
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCARCR 463 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~LPfpd~sFDlV~~~~c~ 463 (595)
+..+|||||||+|.++..++.+ .|+++|+++..+..++.+.. ..++. +.+...+... +++...||+|+|+.++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~-~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~ 108 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAE-RNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPF 108 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHH-HTTCTTEEEEESSTTT-TCCTTCEEEEEE---S
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHH-hcCccccccccccccc-cccccceeEEEEccch
Confidence 4679999999999999999985 49999999998877765544 34444 5555555422 3346899999999742
Q ss_pred cccccC-----HHHHHHHHHHhccCCcEEEEEeC
Q 007641 464 VPWHIE-----GGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 464 v~~h~d-----~~~lL~El~RvLKPGG~Lvis~p 492 (595)
+...+ ...++..+.++|+|||.|++...
T Consensus 109 -~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 109 -HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp -BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -hcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 21212 26889999999999999987653
No 65
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.17 E-value=3.2e-10 Score=118.50 Aligned_cols=155 Identities=23% Similarity=0.266 Sum_probs=99.0
Q ss_pred CccccCchHHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeE
Q 007641 363 GTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAIS 439 (595)
Q Consensus 363 g~~F~~ga~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~ 439 (595)
+..|..|.+.-.....++|..+. .++.+|||||||+|.++...+.. .|+++|++|..+..++.+. ...++...+
T Consensus 137 g~AFGTG~H~TT~lcl~~l~~~~--~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~-~~N~~~~~~ 213 (295)
T PF06325_consen 137 GMAFGTGHHPTTRLCLELLEKYV--KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENA-ELNGVEDRI 213 (295)
T ss_dssp TSSS-SSHCHHHHHHHHHHHHHS--STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHH-HHTT-TTCE
T ss_pred CCcccCCCCHHHHHHHHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHH-HHcCCCeeE
Confidence 34577776554444333333221 34789999999999988777763 7999999999888877554 445554444
Q ss_pred eecCCCCCCCCCCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEE
Q 007641 440 AVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWEL 519 (595)
Q Consensus 440 ~v~d~~~LPfpd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~ 519 (595)
.+..... +....||+|+++- +. . -...++..+.++|+|||+|++++-. . .....+.+.++. ||.+
T Consensus 214 ~v~~~~~--~~~~~~dlvvANI--~~-~-vL~~l~~~~~~~l~~~G~lIlSGIl-----~---~~~~~v~~a~~~-g~~~ 278 (295)
T PF06325_consen 214 EVSLSED--LVEGKFDLVVANI--LA-D-VLLELAPDIASLLKPGGYLILSGIL-----E---EQEDEVIEAYKQ-GFEL 278 (295)
T ss_dssp EESCTSC--TCCS-EEEEEEES---H-H-HHHHHHHHCHHHEEEEEEEEEEEEE-----G---GGHHHHHHHHHT-TEEE
T ss_pred EEEEecc--cccccCCEEEECC--CH-H-HHHHHHHHHHHhhCCCCEEEEcccc-----H---HHHHHHHHHHHC-CCEE
Confidence 3332222 3348899999974 11 1 2357888899999999999998631 1 223566666766 9998
Q ss_pred EEEeecccCceEEEEEEe
Q 007641 520 VSISKDTINKVGIAVYRK 537 (595)
Q Consensus 520 v~~~~~~l~~~giaI~~K 537 (595)
+..... +++...+++|
T Consensus 279 ~~~~~~--~~W~~l~~~K 294 (295)
T PF06325_consen 279 VEEREE--GEWVALVFKK 294 (295)
T ss_dssp EEEEEE--TTEEEEEEEE
T ss_pred EEEEEE--CCEEEEEEEe
Confidence 777654 4555555554
No 66
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.17 E-value=3.8e-10 Score=111.62 Aligned_cols=134 Identities=17% Similarity=0.239 Sum_probs=92.9
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCC-CeeEeecCCCCCCCC-CCceeEEEecccCc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTERLPFP-GIVFDAVHCARCRV 464 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi-~~~~~v~d~~~LPfp-d~sFDlV~~~~c~v 464 (595)
.+.+|||||||+|.++..+++. .++++|+++.++..++.+.. ..++ .+.+...+...++.. .+.||+|++.. .+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~-~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAK-KDPLLKIEYRCTSVEDLAEKGAKSFDVVTCME-VL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH-HcCCCceEEEeCCHHHhhcCCCCCccEEEehh-HH
Confidence 3679999999999999888774 78999999887766654433 2344 345555555555543 37899999986 23
Q ss_pred ccccCHHHHHHHHHHhccCCcEEEEEeCCCC---------------CcCchh---HH---HHHHHHHHHHHcCCEEEEEe
Q 007641 465 PWHIEGGKLLLELNRVLRPGGFFIWSATPVY---------------QKLPED---VE---IWNAMSQLIKAMCWELVSIS 523 (595)
Q Consensus 465 ~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~---------------~~l~e~---i~---~w~~le~Lak~~Gw~~v~~~ 523 (595)
.+..++..+|..+.++|+|||++++.....- ...+.. .. ....+..++...||.++...
T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeee
Confidence 3334778999999999999999998754210 000110 00 11468889999999998765
Q ss_pred e
Q 007641 524 K 524 (595)
Q Consensus 524 ~ 524 (595)
.
T Consensus 203 ~ 203 (224)
T TIGR01983 203 G 203 (224)
T ss_pred e
Confidence 3
No 67
>PRK06922 hypothetical protein; Provisional
Probab=99.16 E-value=1e-10 Score=132.27 Aligned_cols=102 Identities=16% Similarity=0.123 Sum_probs=78.6
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCC--CCCCceeEEEeccc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP--FPGIVFDAVHCARC 462 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LP--fpd~sFDlV~~~~c 462 (595)
++.+|||||||+|.++..|+++ .|+|+|+++.++..++.+. ...+..+.+...+...+| |++++||+|+++.+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl-~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKK-QNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHh-hhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 4789999999999998888763 8999999998887776443 233455556667777777 88899999998752
Q ss_pred Ccccc-------------cCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 463 RVPWH-------------IEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 463 ~v~~h-------------~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
+++. .+...+|++++|+|||||+|+|...
T Consensus 497 -LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 -LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred -HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 2211 1347899999999999999999854
No 68
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.16 E-value=1.1e-10 Score=115.68 Aligned_cols=118 Identities=21% Similarity=0.315 Sum_probs=88.6
Q ss_pred CCCEEEEECCCCchhHHHHhh--CCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC-CCCCCCCCceeEEEecccCcc
Q 007641 389 RTRVVLDVGCGVASFGGFLFD--RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT-ERLPFPGIVFDAVHCARCRVP 465 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~--r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~-~~LPfpd~sFDlV~~~~c~v~ 465 (595)
..+-|||||||+|..+..|.+ +.++|+|||+.|++.|+.+ .+...+..+++ +.+||+.++||.|++.. ++.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~-----e~egdlil~DMG~GlpfrpGtFDg~ISIS-AvQ 123 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVER-----ELEGDLILCDMGEGLPFRPGTFDGVISIS-AVQ 123 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHh-----hhhcCeeeeecCCCCCCCCCccceEEEee-eee
Confidence 478899999999999998887 4789999999988877642 22223344443 89999999999999874 456
Q ss_pred cccC-------H----HHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCE
Q 007641 466 WHIE-------G----GKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWE 518 (595)
Q Consensus 466 ~h~d-------~----~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~ 518 (595)
|..+ + ..++..++.+|++|+..++- +.+++...-..|..-+..+||.
T Consensus 124 WLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q------fYpen~~q~d~i~~~a~~aGF~ 181 (270)
T KOG1541|consen 124 WLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ------FYPENEAQIDMIMQQAMKAGFG 181 (270)
T ss_pred eecccCccccChHHHHHHHhhhhhhhhccCceeEEE------ecccchHHHHHHHHHHHhhccC
Confidence 6431 1 26788899999999999975 3445555566777778888875
No 69
>PRK06202 hypothetical protein; Provisional
Probab=99.16 E-value=4.3e-10 Score=112.75 Aligned_cols=129 Identities=18% Similarity=0.188 Sum_probs=83.9
Q ss_pred CCCEEEEECCCCchhHHHHhh--------CCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEec
Q 007641 389 RTRVVLDVGCGVASFGGFLFD--------RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCA 460 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~--------r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~ 460 (595)
++.+|||||||+|.++..|+. ..|+|+|+++.++..++... ...++ .+...+...+++++++||+|+|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~-~~~~~--~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP-RRPGV--TFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc-ccCCC--eEEEEecccccccCCCccEEEEC
Confidence 467999999999999888864 17999999988776654332 11233 33334445566777899999998
Q ss_pred ccCcccccCH---HHHHHHHHHhccCCcEEEEEeCC---------------CC-C-----cCchhHHHH---HHHHHHHH
Q 007641 461 RCRVPWHIEG---GKLLLELNRVLRPGGFFIWSATP---------------VY-Q-----KLPEDVEIW---NAMSQLIK 513 (595)
Q Consensus 461 ~c~v~~h~d~---~~lL~El~RvLKPGG~Lvis~pp---------------~~-~-----~l~e~i~~w---~~le~Lak 513 (595)
. +++|... ..+|++++|+|+ |.+++.... .+ . .....+..+ .++..+++
T Consensus 137 ~--~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~ 212 (232)
T PRK06202 137 H--FLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAP 212 (232)
T ss_pred C--eeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhh
Confidence 7 4556543 479999999999 444443211 00 0 001111111 67888888
Q ss_pred HcCCEEEEEeec
Q 007641 514 AMCWELVSISKD 525 (595)
Q Consensus 514 ~~Gw~~v~~~~~ 525 (595)
+ ||.+......
T Consensus 213 ~-Gf~~~~~~~~ 223 (232)
T PRK06202 213 Q-GWRVERQWPF 223 (232)
T ss_pred C-CCeEEeccce
Confidence 8 9997766544
No 70
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.16 E-value=2.1e-09 Score=109.79 Aligned_cols=127 Identities=21% Similarity=0.222 Sum_probs=86.9
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v 464 (595)
+..+|||+|||+|.++..|+.. .|+++|+++.++..++.+........+.+...+... +++.++||+|+++.+++
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYI 186 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcC
Confidence 4678999999999999999874 699999999888777655441122234445554422 33457899999976443
Q ss_pred cccc-------------------------CHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEE
Q 007641 465 PWHI-------------------------EGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWEL 519 (595)
Q Consensus 465 ~~h~-------------------------d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~ 519 (595)
.... ....++.++.++|+|||+|++.... .....+..++...||..
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~---------~~~~~~~~~l~~~gf~~ 257 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY---------DQGEAVRALLAAAGFAD 257 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc---------hHHHHHHHHHHhCCCce
Confidence 2110 0146788888999999999986421 12245777888899986
Q ss_pred EEEeec
Q 007641 520 VSISKD 525 (595)
Q Consensus 520 v~~~~~ 525 (595)
+....+
T Consensus 258 v~~~~d 263 (275)
T PRK09328 258 VETRKD 263 (275)
T ss_pred eEEecC
Confidence 665443
No 71
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.15 E-value=9.8e-10 Score=108.04 Aligned_cols=118 Identities=21% Similarity=0.403 Sum_probs=76.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCCCCCCCCceeEEEecccCc
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~LPfpd~sFDlV~~~~c~v 464 (595)
..-+++||+|||.|.|+..|+.+ .++++|+++..+..++.+.+ +.+ +.+.+.+... ..|.+.||+||++. +
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~---~~~~V~~~~~dvp~-~~P~~~FDLIV~SE--V 115 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA---GLPHVEWIQADVPE-FWPEGRFDLIVLSE--V 115 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT---T-SSEEEEES-TTT----SS-EEEEEEES---
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC---CCCCeEEEECcCCC-CCCCCCeeEEEEeh--H
Confidence 34678999999999999999997 89999999876655543332 223 4445554433 35789999999998 4
Q ss_pred ccccC----HHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHH------HHHHHHHHHcC
Q 007641 465 PWHIE----GGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIW------NAMSQLIKAMC 516 (595)
Q Consensus 465 ~~h~d----~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w------~~le~Lak~~G 516 (595)
.+.++ ...++..+...|+|||.||+.... ...+..| ..+..+++..=
T Consensus 116 lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r-----d~~c~~wgh~~ga~tv~~~~~~~~ 172 (201)
T PF05401_consen 116 LYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR-----DANCRRWGHAAGAETVLEMLQEHL 172 (201)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE------HHHHHHTT-S--HHHHHHHHHHHS
T ss_pred hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec-----CCcccccCcccchHHHHHHHHHHh
Confidence 44442 357899999999999999997532 2233344 55666666554
No 72
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.15 E-value=2.7e-10 Score=113.06 Aligned_cols=93 Identities=16% Similarity=0.110 Sum_probs=69.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v 464 (595)
++.+|||||||+|.++..|+.. .|+|+|+++.++..++ +....+.+...++.. |+++++||+|++.. +
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~-----~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~--v 114 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAK-----AYLPNINIIQGSLFD-PFKDNFFDLVLTKG--V 114 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHH-----hhCCCCcEEEeeccC-CCCCCCEEEEEECC--h
Confidence 4678999999999999988763 6999999987665543 322233445555555 88899999999986 4
Q ss_pred ccccCH---HHHHHHHHHhccCCcEEEEEe
Q 007641 465 PWHIEG---GKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 465 ~~h~d~---~~lL~El~RvLKPGG~Lvis~ 491 (595)
++|+++ ..++++++|++ +++++|..
T Consensus 115 L~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 115 LIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred hhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 455543 68899999998 56777764
No 73
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=7.1e-10 Score=115.63 Aligned_cols=133 Identities=21% Similarity=0.283 Sum_probs=91.6
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCC-CceeEEEecccCc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPG-IVFDAVHCARCRV 464 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd-~sFDlV~~~~c~v 464 (595)
++++|||+|||+|.++...+.. .|+|+|++|..+..++-+ ++..+++..........+.++. +.||+|+++-
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eN-a~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI--- 237 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAAREN-ARLNGVELLVQAKGFLLLEVPENGPFDVIVANI--- 237 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHH-HHHcCCchhhhcccccchhhcccCcccEEEehh---
Confidence 5899999999999999888774 699999999988777754 4445555311222122233333 5899999974
Q ss_pred ccccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEEeecccCceEEEEEE
Q 007641 465 PWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKDTINKVGIAVYR 536 (595)
Q Consensus 465 ~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~~~~~l~~~giaI~~ 536 (595)
+ .--...+...+.++|||||+|++++- +. ..-..+...+...||.++..... .++-..+++
T Consensus 238 L-A~vl~~La~~~~~~lkpgg~lIlSGI--l~------~q~~~V~~a~~~~gf~v~~~~~~--~eW~~i~~k 298 (300)
T COG2264 238 L-AEVLVELAPDIKRLLKPGGRLILSGI--LE------DQAESVAEAYEQAGFEVVEVLER--EEWVAIVGK 298 (300)
T ss_pred h-HHHHHHHHHHHHHHcCCCceEEEEee--hH------hHHHHHHHHHHhCCCeEeEEEec--CCEEEEEEE
Confidence 1 11235888899999999999999962 11 12356677788899998877655 334333344
No 74
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.14 E-value=2.3e-10 Score=117.73 Aligned_cols=101 Identities=20% Similarity=0.265 Sum_probs=72.3
Q ss_pred CCCEEEEECCCCch----hHHHHhh---------CCcEEEeCCchhHHHHHHHHH---HHcCC-----------------
Q 007641 389 RTRVVLDVGCGVAS----FGGFLFD---------RGVLTMSFAPKDEHEAQVQFA---LERGI----------------- 435 (595)
Q Consensus 389 ~~~rVLDIGCGtG~----~a~~La~---------r~V~giDisp~di~~aqvq~A---~ergi----------------- 435 (595)
+..+|||+|||+|. ++..|++ ..|+|+|+++.++..|+...- .-+++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 35799999999995 4444443 269999999888876653210 00111
Q ss_pred -------CeeEeecCCCCCCCCCCceeEEEecccCcccccC---HHHHHHHHHHhccCCcEEEEEe
Q 007641 436 -------PAISAVMGTERLPFPGIVFDAVHCARCRVPWHIE---GGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 436 -------~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h~d---~~~lL~El~RvLKPGG~Lvis~ 491 (595)
.+.+.+.+....+++.+.||+|+|.. ++++.+ ...++.+++++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crn--vl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRN--VLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEech--hHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 24556677777777788999999986 333443 3589999999999999999974
No 75
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.14 E-value=3.1e-10 Score=113.45 Aligned_cols=100 Identities=16% Similarity=0.020 Sum_probs=72.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHH------------HcCCCeeEeecCCCCCCCC-CCc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFAL------------ERGIPAISAVMGTERLPFP-GIV 453 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~------------ergi~~~~~v~d~~~LPfp-d~s 453 (595)
++.+|||+|||.|..+.+|+++ .|+|+|+|+..+..++.+... .++..+.+.+.|...++.. ...
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~ 113 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGP 113 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCC
Confidence 4679999999999999999997 899999999877654221100 0233455677777666532 357
Q ss_pred eeEEEecccCcccccCH---HHHHHHHHHhccCCcEEEEE
Q 007641 454 FDAVHCARCRVPWHIEG---GKLLLELNRVLRPGGFFIWS 490 (595)
Q Consensus 454 FDlV~~~~c~v~~h~d~---~~lL~El~RvLKPGG~Lvis 490 (595)
||+|+...+++ |+.+ ..++..|.++|||||++++.
T Consensus 114 fD~i~D~~~~~--~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 114 VDAVYDRAALI--ALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred cCEEEechhhc--cCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 99999865333 4433 67999999999999976554
No 76
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.12 E-value=9.8e-10 Score=115.98 Aligned_cols=128 Identities=18% Similarity=0.171 Sum_probs=80.5
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHc-----CCCeeEeecCCCCCCCCCCceeEEEecc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALER-----GIPAISAVMGTERLPFPGIVFDAVHCAR 461 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~er-----gi~~~~~v~d~~~LPfpd~sFDlV~~~~ 461 (595)
++.+|||||||+|.++..|+++ .|+|+|+++.++..++.+..... ...+.+...+...+ +++||+|+|..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcC
Confidence 4679999999999999999985 69999999999888775543221 12234444444333 57899999987
Q ss_pred cCccccc-CH--HHHHHHHHHhccCCcEEEEEeCCCCCc---------Cchh---HH----HHHHHHHHHHHcCCEEEEE
Q 007641 462 CRVPWHI-EG--GKLLLELNRVLRPGGFFIWSATPVYQK---------LPED---VE----IWNAMSQLIKAMCWELVSI 522 (595)
Q Consensus 462 c~v~~h~-d~--~~lL~El~RvLKPGG~Lvis~pp~~~~---------l~e~---i~----~w~~le~Lak~~Gw~~v~~ 522 (595)
. ++|. +. ..++..+.+ |.+||.++...+..+.+ ++.. .. .-..+..+++.+||.++..
T Consensus 221 v--L~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~ 297 (315)
T PLN02585 221 V--LIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARR 297 (315)
T ss_pred E--EEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEE
Confidence 3 3343 22 345666665 45666655433321100 0000 00 1267888999999997654
No 77
>PTZ00146 fibrillarin; Provisional
Probab=99.12 E-value=2.4e-09 Score=111.54 Aligned_cols=152 Identities=14% Similarity=0.119 Sum_probs=95.2
Q ss_pred ccCchHHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCCeeEe
Q 007641 366 FKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISA 440 (595)
Q Consensus 366 F~~ga~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~~~~~ 440 (595)
|...+..+...|..-+..+. -.++.+|||||||+|.++.+|++. .|+++|+++.+.. .++..+..+ ..+..+
T Consensus 110 w~p~rSKlaa~i~~g~~~l~-IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~-dLl~~ak~r-~NI~~I 186 (293)
T PTZ00146 110 WNPFRSKLAAAIIGGVANIP-IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGR-DLTNMAKKR-PNIVPI 186 (293)
T ss_pred eCCcccHHHHHHHCCcceec-cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHH-HHHHHhhhc-CCCEEE
Confidence 33444444545544444332 246789999999999999999985 5999999976442 234444443 234555
Q ss_pred ecCCCC---CCCCCCceeEEEecccCcccccC-HHHHHHHHHHhccCCcEEEEEeCCC-CCcCchhHHHH-HHHHHHHHH
Q 007641 441 VMGTER---LPFPGIVFDAVHCARCRVPWHIE-GGKLLLELNRVLRPGGFFIWSATPV-YQKLPEDVEIW-NAMSQLIKA 514 (595)
Q Consensus 441 v~d~~~---LPfpd~sFDlV~~~~c~v~~h~d-~~~lL~El~RvLKPGG~Lvis~pp~-~~~l~e~i~~w-~~le~Lak~ 514 (595)
..++.. ++++..+||+|++.. . .++ ...++.++.++|||||+|+|..... -...+..-..+ .++ .+++.
T Consensus 187 ~~Da~~p~~y~~~~~~vDvV~~Dv-a---~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev-~~L~~ 261 (293)
T PTZ00146 187 IEDARYPQKYRMLVPMVDVIFADV-A---QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEV-QKLKK 261 (293)
T ss_pred ECCccChhhhhcccCCCCEEEEeC-C---CcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHH-HHHHH
Confidence 555432 222345799999974 2 233 3567779999999999999964321 11111111223 334 77899
Q ss_pred cCCEEEEEeec
Q 007641 515 MCWELVSISKD 525 (595)
Q Consensus 515 ~Gw~~v~~~~~ 525 (595)
.||..+.....
T Consensus 262 ~GF~~~e~v~L 272 (293)
T PTZ00146 262 EGLKPKEQLTL 272 (293)
T ss_pred cCCceEEEEec
Confidence 99998776554
No 78
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.11 E-value=4.2e-10 Score=111.96 Aligned_cols=91 Identities=14% Similarity=0.080 Sum_probs=66.8
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCC--------CCCCCcee
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL--------PFPGIVFD 455 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~L--------Pfpd~sFD 455 (595)
++.+|||||||+|.++..++++ .|+++|+++. . ....+.+..++.... ++.+.+||
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~------~-----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM------D-----PIVGVDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc------c-----CCCCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 5779999999999999988874 5999999872 1 112345566666554 36678999
Q ss_pred EEEecccCcccccCH-----------HHHHHHHHHhccCCcEEEEEe
Q 007641 456 AVHCARCRVPWHIEG-----------GKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 456 lV~~~~c~v~~h~d~-----------~~lL~El~RvLKPGG~Lvis~ 491 (595)
+|+|..+ .+++..+ ..+|.++.|+|||||+|++..
T Consensus 120 ~V~S~~~-~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 120 VVMSDMA-PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred EEecCCC-CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 9999752 2232221 358999999999999999964
No 79
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=3.2e-10 Score=117.79 Aligned_cols=129 Identities=22% Similarity=0.285 Sum_probs=87.8
Q ss_pred eecCCCCccccCchHHH-HHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHH
Q 007641 357 LTFPGGGTQFKNGALHY-IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFAL 431 (595)
Q Consensus 357 ~~Fpggg~~F~~ga~~y-id~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ 431 (595)
++|-...-.|......+ .+.|.+.++. ..+.+|||+|||.|.++..|++. .|+-+|++...+..++.+.+.
T Consensus 129 ~~~~t~pGVFS~~~lD~GS~lLl~~l~~----~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~ 204 (300)
T COG2813 129 LTFKTLPGVFSRDKLDKGSRLLLETLPP----DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAA 204 (300)
T ss_pred eEEEeCCCCCcCCCcChHHHHHHHhCCc----cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHH
Confidence 33333334466555443 5667777765 22449999999999999999985 789999998888777766554
Q ss_pred HcCCCeeEeecCCCCCCCCCCceeEEEecccCcccccC-H----HHHHHHHHHhccCCcEEEEEeC
Q 007641 432 ERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIE-G----GKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 432 ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h~d-~----~~lL~El~RvLKPGG~Lvis~p 492 (595)
. ++....+..+..-.+..+ +||+|+|+.++ +--.. . ..++....+.|++||.|+|...
T Consensus 205 N-~~~~~~v~~s~~~~~v~~-kfd~IisNPPf-h~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 205 N-GVENTEVWASNLYEPVEG-KFDLIISNPPF-HAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred c-CCCccEEEEecccccccc-cccEEEeCCCc-cCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 3 444322333333344444 89999999742 22111 1 4899999999999999999865
No 80
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.10 E-value=3.7e-10 Score=120.42 Aligned_cols=111 Identities=17% Similarity=0.168 Sum_probs=79.7
Q ss_pred HHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCC
Q 007641 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF 449 (595)
Q Consensus 374 id~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPf 449 (595)
...+...++. ....+|||||||+|.++..++++ .|+++|+++.++..++.... ..++...+...+... .
T Consensus 185 t~lLl~~l~~----~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~-~n~l~~~~~~~D~~~--~ 257 (342)
T PRK09489 185 SQLLLSTLTP----HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLA-ANGLEGEVFASNVFS--D 257 (342)
T ss_pred HHHHHHhccc----cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCEEEEccccc--c
Confidence 3455555543 12458999999999999999874 69999999998888775544 345555555444332 2
Q ss_pred CCCceeEEEecccCccccc-----CHHHHHHHHHHhccCCcEEEEEeC
Q 007641 450 PGIVFDAVHCARCRVPWHI-----EGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 450 pd~sFDlV~~~~c~v~~h~-----d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
..+.||+|+|+.+ +++.. ....+|.++.++|||||.|+|...
T Consensus 258 ~~~~fDlIvsNPP-FH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 258 IKGRFDMIISNPP-FHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred cCCCccEEEECCC-ccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 3578999999863 33222 236899999999999999999864
No 81
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.10 E-value=4e-10 Score=121.86 Aligned_cols=107 Identities=21% Similarity=0.376 Sum_probs=76.9
Q ss_pred HHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCC
Q 007641 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF 449 (595)
Q Consensus 373 yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPf 449 (595)
.++.+.+.+.. .++.+|||||||+|.++.+++++ .|+|+|+++.++..++.+. .++.+.+...+...+
T Consensus 155 k~~~l~~~l~l----~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~---~~l~v~~~~~D~~~l-- 225 (383)
T PRK11705 155 KLDLICRKLQL----KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERC---AGLPVEIRLQDYRDL-- 225 (383)
T ss_pred HHHHHHHHhCC----CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---ccCeEEEEECchhhc--
Confidence 34445444432 35789999999999999999874 6999999987666554332 234444455554444
Q ss_pred CCCceeEEEecccCccccc---CHHHHHHHHHHhccCCcEEEEEe
Q 007641 450 PGIVFDAVHCARCRVPWHI---EGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 450 pd~sFDlV~~~~c~v~~h~---d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
+++||+|++.. +++|. +...+|.++.|+|||||+|++..
T Consensus 226 -~~~fD~Ivs~~--~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 226 -NGQFDRIVSVG--MFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred -CCCCCEEEEeC--chhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 47899999976 34454 33789999999999999999864
No 82
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.10 E-value=1.9e-09 Score=112.60 Aligned_cols=128 Identities=13% Similarity=0.254 Sum_probs=85.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCC--eeEeecCCCCCCCCCCceeEEEecc
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCAR 461 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~--~~~~v~d~~~LPfpd~sFDlV~~~~ 461 (595)
.+..+|||||||+|.++..++++ .++++|+ +.++..+. +.+.+.++. +.+...+....+++. +|+|++.+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVN-ENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHH-HHHHhCCccceEEEEecCccCCCCCC--CCEEEeEh
Confidence 35689999999999999999885 5889997 55555544 334444543 345556665556653 79998876
Q ss_pred cCcccccCH---HHHHHHHHHhccCCcEEEEEeCCCCCcCchhHH-------------------HHHHHHHHHHHcCCEE
Q 007641 462 CRVPWHIEG---GKLLLELNRVLRPGGFFIWSATPVYQKLPEDVE-------------------IWNAMSQLIKAMCWEL 519 (595)
Q Consensus 462 c~v~~h~d~---~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~-------------------~w~~le~Lak~~Gw~~ 519 (595)
++++.+. ..+|++++++|+|||+|+|.............. .-..+..+++.+||+.
T Consensus 224 --~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~ 301 (306)
T TIGR02716 224 --ILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKD 301 (306)
T ss_pred --hhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCe
Confidence 4444433 579999999999999999885422111100000 0146777888888876
Q ss_pred EE
Q 007641 520 VS 521 (595)
Q Consensus 520 v~ 521 (595)
+.
T Consensus 302 v~ 303 (306)
T TIGR02716 302 VT 303 (306)
T ss_pred eE
Confidence 64
No 83
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.10 E-value=1e-09 Score=111.66 Aligned_cols=125 Identities=20% Similarity=0.266 Sum_probs=94.5
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCCC--CCCCCceeEEEecc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERL--PFPGIVFDAVHCAR 461 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~L--Pfpd~sFDlV~~~~ 461 (595)
...+|||||||+|.++..|+++ .|+++++.+.+...|+...+....-. +.+...|...+ ++.-.+||+|+|+.
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 3789999999999999999986 79999999998888877766644333 33444554333 23345799999998
Q ss_pred cCcccccC-----------------HHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEE
Q 007641 462 CRVPWHIE-----------------GGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSI 522 (595)
Q Consensus 462 c~v~~h~d-----------------~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~ 522 (595)
+++.-... ...+++-+.++|||||+|.+..++ +...++..++++.+|.....
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~---------erl~ei~~~l~~~~~~~k~i 192 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP---------ERLAEIIELLKSYNLEPKRI 192 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH---------HHHHHHHHHHHhcCCCceEE
Confidence 65432221 247899999999999999999764 55678888999999987665
No 84
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.09 E-value=4.9e-09 Score=113.94 Aligned_cols=136 Identities=15% Similarity=0.066 Sum_probs=94.6
Q ss_pred CCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCC-CCceeEEEecccCc
Q 007641 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFP-GIVFDAVHCARCRV 464 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfp-d~sFDlV~~~~c~v 464 (595)
+.+|||||||+|.++..|+.+ .|+++|+++.++..++.+.. ..+..+.+...+.....++ ..+||+|+|+.+++
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~-~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAA-DLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 568999999999999888753 69999999999888775543 4455666666665433332 35799999988654
Q ss_pred cccc--------------------CH----HHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEE
Q 007641 465 PWHI--------------------EG----GKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELV 520 (595)
Q Consensus 465 ~~h~--------------------d~----~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v 520 (595)
.... +. ..++..+.+.|+|||++++.... ..-..+..++...||..+
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~---------~Q~e~V~~ll~~~Gf~~v 401 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF---------DQGAAVRGVLAENGFSGV 401 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc---------cHHHHHHHHHHHCCCcEE
Confidence 3210 00 25667778899999999876431 223578888899999887
Q ss_pred EEeecccCceEEEEE
Q 007641 521 SISKDTINKVGIAVY 535 (595)
Q Consensus 521 ~~~~~~l~~~giaI~ 535 (595)
....+.....-+.+.
T Consensus 402 ~v~kDl~G~dR~v~~ 416 (423)
T PRK14966 402 ETLPDLAGLDRVTLG 416 (423)
T ss_pred EEEEcCCCCcEEEEE
Confidence 776665443334433
No 85
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.09 E-value=1.6e-09 Score=105.88 Aligned_cols=124 Identities=20% Similarity=0.221 Sum_probs=81.9
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCC-C-CCCCCceeEEEecccC
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER-L-PFPGIVFDAVHCARCR 463 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~-L-Pfpd~sFDlV~~~~c~ 463 (595)
++.+|||||||+|.++..|++. .++|+|+++.++. .+..+++.. ...+... + ++++++||+|+|+.+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~-----~a~~~~~~~--~~~d~~~~l~~~~~~sfD~Vi~~~~- 84 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVL-----ACVARGVNV--IQGDLDEGLEAFPDKSFDYVILSQT- 84 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHH-----HHHHcCCeE--EEEEhhhcccccCCCCcCEEEEhhH-
Confidence 3679999999999999988764 5689999866543 344455543 3344432 4 477889999999862
Q ss_pred cccccCHHHHHHHHHHhccCCcEEEEEeCCC----------------------CCcC---chhHHHHHHHHHHHHHcCCE
Q 007641 464 VPWHIEGGKLLLELNRVLRPGGFFIWSATPV----------------------YQKL---PEDVEIWNAMSQLIKAMCWE 518 (595)
Q Consensus 464 v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~----------------------~~~l---~e~i~~w~~le~Lak~~Gw~ 518 (595)
++|..++..+|+++.|++++ ++++.|.. +.+. .........+.++++.+||+
T Consensus 85 l~~~~d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~ 161 (194)
T TIGR02081 85 LQATRNPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLR 161 (194)
T ss_pred hHcCcCHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCE
Confidence 34344778999999888765 33332211 0000 00112347888999999999
Q ss_pred EEEEe
Q 007641 519 LVSIS 523 (595)
Q Consensus 519 ~v~~~ 523 (595)
++...
T Consensus 162 v~~~~ 166 (194)
T TIGR02081 162 ILDRA 166 (194)
T ss_pred EEEEE
Confidence 87764
No 86
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.08 E-value=1.7e-09 Score=116.65 Aligned_cols=101 Identities=16% Similarity=0.265 Sum_probs=79.0
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCe-eEeecCCCCC--CCCCCceeEEEecc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPA-ISAVMGTERL--PFPGIVFDAVHCAR 461 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~-~~~v~d~~~L--Pfpd~sFDlV~~~~ 461 (595)
.+..+||||||+|.++..|+.+ .++|+|+++.++..+..+. ...++.. .+...++..+ .+++++||.|++++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka-~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQI-ELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHH-HHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 4679999999999999999985 7999999999887776444 4556554 4455555433 57889999999975
Q ss_pred cCcccccCH------HHHHHHHHHhccCCcEEEEEe
Q 007641 462 CRVPWHIEG------GKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 462 c~v~~h~d~------~~lL~El~RvLKPGG~Lvis~ 491 (595)
..+|.... ..+|.++.|+|+|||.|.+.+
T Consensus 201 -PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 201 -PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred -CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 36775432 589999999999999999874
No 87
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.07 E-value=1.6e-09 Score=104.96 Aligned_cols=143 Identities=17% Similarity=0.194 Sum_probs=100.4
Q ss_pred HHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCC--eeEeecCC
Q 007641 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGT 444 (595)
Q Consensus 371 ~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~--~~~~v~d~ 444 (595)
...+++|...+....-.....+|||+|||.|.++..|++. .++|+|.++..+..|+ ++|...+.+ +.+.+.|+
T Consensus 49 ~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~-niAe~~~~~n~I~f~q~DI 127 (227)
T KOG1271|consen 49 ERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQ-NIAERDGFSNEIRFQQLDI 127 (227)
T ss_pred HHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHH-HHHHhcCCCcceeEEEeec
Confidence 3456666666552222333459999999999999999985 5899999999888775 778888877 56777776
Q ss_pred CCCCCCCCceeEEEecc--cCcccccC-----HHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCC
Q 007641 445 ERLPFPGIVFDAVHCAR--CRVPWHIE-----GGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCW 517 (595)
Q Consensus 445 ~~LPfpd~sFDlV~~~~--c~v~~h~d-----~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw 517 (595)
..-.|..+.||+|+--. -++..+.+ +..++.-+.++|+|||+|+|+.-+ ....+|.......+|
T Consensus 128 ~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN---------~T~dELv~~f~~~~f 198 (227)
T KOG1271|consen 128 TDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN---------FTKDELVEEFENFNF 198 (227)
T ss_pred cCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC---------ccHHHHHHHHhcCCe
Confidence 65567778899998432 11222221 246888999999999999998532 123566667777777
Q ss_pred EEEEEe
Q 007641 518 ELVSIS 523 (595)
Q Consensus 518 ~~v~~~ 523 (595)
......
T Consensus 199 ~~~~tv 204 (227)
T KOG1271|consen 199 EYLSTV 204 (227)
T ss_pred EEEEee
Confidence 765543
No 88
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.07 E-value=2.3e-10 Score=101.59 Aligned_cols=103 Identities=23% Similarity=0.305 Sum_probs=74.2
Q ss_pred CCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcC-CCeeEeecCCCCCC--CCCCceeEEEecccC
Q 007641 390 TRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERG-IPAISAVMGTERLP--FPGIVFDAVHCARCR 463 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~erg-i~~~~~v~d~~~LP--fpd~sFDlV~~~~c~ 463 (595)
+.+|||+|||+|.++..++++ .++++|+++..+..+...+..... .++.+...+...+. ++++.||+|+++..+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 358999999999999888863 799999998877666644443222 24566667665543 778999999999865
Q ss_pred cccccC-------HHHHHHHHHHhccCCcEEEEEeC
Q 007641 464 VPWHIE-------GGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 464 v~~h~d-------~~~lL~El~RvLKPGG~Lvis~p 492 (595)
+..... ...+++.+.++|||||.+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 543211 15889999999999999998754
No 89
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.06 E-value=1.4e-09 Score=107.94 Aligned_cols=130 Identities=23% Similarity=0.314 Sum_probs=83.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCC--CeeEeecCCCCCCCCCCceeEEEecccCc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi--~~~~~v~d~~~LPfpd~sFDlV~~~~c~v 464 (595)
++.+|||||||+|.++..|+++ .|+++|+++.++..++..+.. .+. .+.+...+ ++..+++||+|++.. +
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~-~~~~~~i~~~~~d---~~~~~~~fD~v~~~~--~ 136 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPE-AGLAGNITFEVGD---LESLLGRFDTVVCLD--V 136 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh-cCCccCcEEEEcC---chhccCCcCEEEEcc--h
Confidence 4679999999999999999875 699999999988877755433 333 23444444 455568899999976 3
Q ss_pred ccc-c--CHHHHHHHHHHhccCCcEEEEEeC-CCC-------CcCc---hh--HH--HHHHHHHHHHHcCCEEEEEee
Q 007641 465 PWH-I--EGGKLLLELNRVLRPGGFFIWSAT-PVY-------QKLP---ED--VE--IWNAMSQLIKAMCWELVSISK 524 (595)
Q Consensus 465 ~~h-~--d~~~lL~El~RvLKPGG~Lvis~p-p~~-------~~l~---e~--i~--~w~~le~Lak~~Gw~~v~~~~ 524 (595)
++| . ....++..+.+++++++++.+... +.+ ...+ .. .. .-..+..++...||.++....
T Consensus 137 l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 214 (230)
T PRK07580 137 LIHYPQEDAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTER 214 (230)
T ss_pred hhcCCHHHHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeee
Confidence 333 2 236788888888765554433211 000 0000 00 00 115677888999999777643
No 90
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.06 E-value=1.4e-09 Score=107.51 Aligned_cols=107 Identities=17% Similarity=0.136 Sum_probs=74.4
Q ss_pred HHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCC--eeEeecCCC
Q 007641 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTE 445 (595)
Q Consensus 373 yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~--~~~~v~d~~ 445 (595)
....+.+.+.. .++.+|||||||+|.++..|++. .|+++|+++.++..++.++. ..++. +.+...+..
T Consensus 60 ~~~~~~~~l~~----~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~-~~~~~~~v~~~~~d~~ 134 (205)
T PRK13944 60 MVAMMCELIEP----RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIE-RLGYWGVVEVYHGDGK 134 (205)
T ss_pred HHHHHHHhcCC----CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEEECCcc
Confidence 34445554432 35789999999999999888763 69999999988777664443 34443 455556654
Q ss_pred CCCCCCCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 446 RLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 446 ~LPfpd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
........||+|++.. ...+ +..++.++|+|||+|++..
T Consensus 135 ~~~~~~~~fD~Ii~~~--~~~~-----~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 135 RGLEKHAPFDAIIVTA--AAST-----IPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCCccCCCccEEEEcc--Ccch-----hhHHHHHhcCcCcEEEEEE
Confidence 4433457899999975 2222 3357889999999999864
No 91
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.06 E-value=3.3e-09 Score=104.13 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=83.5
Q ss_pred CCCEEEEECCCCchhHHHHhh-----CCcEEEeCCchhHHHHHHHHHHHcCC--CeeEeecCCCC-CCCCCCceeEEEec
Q 007641 389 RTRVVLDVGCGVASFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTER-LPFPGIVFDAVHCA 460 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~-----r~V~giDisp~di~~aqvq~A~ergi--~~~~~v~d~~~-LPfpd~sFDlV~~~ 460 (595)
++.+|||+|||+|.++..++. ..|+++|+++.++..++.+.. ..++ .+.+...+... ++.....||+|++.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~-~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~ 118 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAE-KFGVLNNIVLIKGEAPEILFTINEKFDRIFIG 118 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence 578999999999999987765 269999999988877664443 3442 33444444433 33334689999985
Q ss_pred ccCcccccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCE
Q 007641 461 RCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWE 518 (595)
Q Consensus 461 ~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~ 518 (595)
. .......+|..+.++|||||+|++... .......+..+++.+||.
T Consensus 119 ~----~~~~~~~~l~~~~~~LkpgG~lv~~~~--------~~~~~~~~~~~l~~~g~~ 164 (198)
T PRK00377 119 G----GSEKLKEIISASWEIIKKGGRIVIDAI--------LLETVNNALSALENIGFN 164 (198)
T ss_pred C----CcccHHHHHHHHHHHcCCCcEEEEEee--------cHHHHHHHHHHHHHcCCC
Confidence 3 123567899999999999999998543 123446777778889984
No 92
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.04 E-value=1.6e-09 Score=107.86 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=76.3
Q ss_pred HHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCC
Q 007641 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGT 444 (595)
Q Consensus 371 ~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~ 444 (595)
......+.+.+.. .++.+|||||||+|.++..|++. .|+++|+++.++..++.+.. ..++. +.+...+.
T Consensus 62 p~~~~~~~~~l~~----~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~-~~g~~~v~~~~gd~ 136 (212)
T PRK13942 62 IHMVAIMCELLDL----KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLK-KLGYDNVEVIVGDG 136 (212)
T ss_pred HHHHHHHHHHcCC----CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCeEEEECCc
Confidence 3444555555442 35789999999999999888763 79999999988877764443 34443 45555565
Q ss_pred CCCCCCCCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 445 ERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 445 ~~LPfpd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
...+.+.+.||+|++.. .+. .+...+.+.|||||+|++..
T Consensus 137 ~~~~~~~~~fD~I~~~~-~~~------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 137 TLGYEENAPYDRIYVTA-AGP------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ccCCCcCCCcCEEEECC-Ccc------cchHHHHHhhCCCcEEEEEE
Confidence 55455667899999874 222 23346778999999999864
No 93
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.04 E-value=1.6e-09 Score=107.62 Aligned_cols=106 Identities=19% Similarity=0.228 Sum_probs=73.7
Q ss_pred HHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC--C---cEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCCC
Q 007641 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--G---VLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERL 447 (595)
Q Consensus 374 id~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r--~---V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~L 447 (595)
...+.+.+.. .++.+|||||||+|.++..|+.. . |+++|+++.++..++.++ ...++. +.+...+....
T Consensus 66 ~~~~~~~l~~----~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~-~~~g~~~v~~~~~d~~~~ 140 (215)
T TIGR00080 66 VAMMTELLEL----KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRL-RKLGLDNVIVIVGDGTQG 140 (215)
T ss_pred HHHHHHHhCC----CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH-HHCCCCCeEEEECCcccC
Confidence 3445444432 35789999999999999988874 3 999999998887776443 344554 44455555443
Q ss_pred CCCCCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 448 PFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 448 Pfpd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
......||+|++..+ . ..+...+.+.|+|||+|++..
T Consensus 141 ~~~~~~fD~Ii~~~~--~-----~~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 141 WEPLAPYDRIYVTAA--G-----PKIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CcccCCCCEEEEcCC--c-----ccccHHHHHhcCcCcEEEEEE
Confidence 333468999998752 1 123456889999999999864
No 94
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.03 E-value=9.3e-10 Score=104.86 Aligned_cols=114 Identities=17% Similarity=0.138 Sum_probs=81.0
Q ss_pred EEEeCCchhHHHHHHHHHHHc---CCCeeEeecCCCCCCCCCCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEE
Q 007641 413 LTMSFAPKDEHEAQVQFALER---GIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIW 489 (595)
Q Consensus 413 ~giDisp~di~~aqvq~A~er---gi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvi 489 (595)
+|+|+++.|+..|+.+..... ...+.+.+.+...+|+++++||+|++.. .+++..++..+|++++|+|||||+|+|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~-~l~~~~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGY-GLRNVVDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecc-hhhcCCCHHHHHHHHHHHcCcCeEEEE
Confidence 489999988877754432211 1235677788899999999999999986 344445889999999999999999987
Q ss_pred EeCCC------------------------------CCcCchhHHHH---HHHHHHHHHcCCEEEEEeeccc
Q 007641 490 SATPV------------------------------YQKLPEDVEIW---NAMSQLIKAMCWELVSISKDTI 527 (595)
Q Consensus 490 s~pp~------------------------------~~~l~e~i~~w---~~le~Lak~~Gw~~v~~~~~~l 527 (595)
..... |.+++..+..| .++..+++.+||..+......+
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~ 150 (160)
T PLN02232 80 LDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISG 150 (160)
T ss_pred EECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcc
Confidence 74311 11222222222 7788899999999887766554
No 95
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.03 E-value=2.7e-10 Score=113.63 Aligned_cols=145 Identities=23% Similarity=0.304 Sum_probs=99.5
Q ss_pred HHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCC-CCC-CCC
Q 007641 376 FIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTE-RLP-FPG 451 (595)
Q Consensus 376 ~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~-~LP-fpd 451 (595)
.|.++|.....+ +-+++||+|||||.++..|..+ .++|+|||. .|+..|.++++--...+.+.. -++ ...
T Consensus 113 ~l~emI~~~~~g-~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~-----nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~ 186 (287)
T COG4976 113 LLAEMIGKADLG-PFRRMLDLGCGTGLTGEALRDMADRLTGVDISE-----NMLAKAHEKGLYDTLYVAEAVLFLEDLTQ 186 (287)
T ss_pred HHHHHHHhccCC-ccceeeecccCcCcccHhHHHHHhhccCCchhH-----HHHHHHHhccchHHHHHHHHHHHhhhccC
Confidence 344444433322 3789999999999999998875 789999985 456677777764334444332 222 345
Q ss_pred CceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeCCCC--C--cCchh---HHHHHHHHHHHHHcCCEEEEEee
Q 007641 452 IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVY--Q--KLPED---VEIWNAMSQLIKAMCWELVSISK 524 (595)
Q Consensus 452 ~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~--~--~l~e~---i~~w~~le~Lak~~Gw~~v~~~~ 524 (595)
..||+|++.. .+++.-+...++.-+...|+|||.|.++....- . .+.+. .+.-..+..++...||+++....
T Consensus 187 er~DLi~AaD-Vl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ 265 (287)
T COG4976 187 ERFDLIVAAD-VLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIED 265 (287)
T ss_pred Ccccchhhhh-HHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeec
Confidence 7899999987 334444778999999999999999999954321 1 11111 11236788899999999998876
Q ss_pred ccc
Q 007641 525 DTI 527 (595)
Q Consensus 525 ~~l 527 (595)
.++
T Consensus 266 tti 268 (287)
T COG4976 266 TTI 268 (287)
T ss_pred ccc
Confidence 643
No 96
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.03 E-value=3.5e-09 Score=105.00 Aligned_cols=127 Identities=18% Similarity=0.304 Sum_probs=78.9
Q ss_pred CCCEEEEECCCCchhHHHHhhC-CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCcccc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR-GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWH 467 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r-~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h 467 (595)
+...|.|+|||.+.++..+... .|...|+.+.. -.+..+++..+|+++++.|+|++ |+.+..
T Consensus 72 ~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n---------------~~Vtacdia~vPL~~~svDv~Vf--cLSLMG 134 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPN---------------PRVTACDIANVPLEDESVDVAVF--CLSLMG 134 (219)
T ss_dssp TTS-EEEES-TT-HHHHH--S---EEEEESS-SS---------------TTEEES-TTS-S--TT-EEEEEE--ES---S
T ss_pred CCEEEEECCCchHHHHHhcccCceEEEeeccCCC---------------CCEEEecCccCcCCCCceeEEEE--EhhhhC
Confidence 3579999999999999877653 68899986431 13566888999999999999998 556667
Q ss_pred cCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEEeecccCceEEEEEEeCC
Q 007641 468 IEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKDTINKVGIAVYRKPT 539 (595)
Q Consensus 468 ~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~~~~~l~~~giaI~~KP~ 539 (595)
.+-..+|.|++|+|||||.|+|.... ........+...++.+||.+....... +...+-.|.|..
T Consensus 135 Tn~~~fi~EA~RvLK~~G~L~IAEV~------SRf~~~~~F~~~~~~~GF~~~~~d~~n-~~F~~f~F~K~~ 199 (219)
T PF05148_consen 135 TNWPDFIREANRVLKPGGILKIAEVK------SRFENVKQFIKALKKLGFKLKSKDESN-KHFVLFEFKKIR 199 (219)
T ss_dssp S-HHHHHHHHHHHEEEEEEEEEEEEG------GG-S-HHHHHHHHHCTTEEEEEEE--S-TTEEEEEEEE-S
T ss_pred CCcHHHHHHHHheeccCcEEEEEEec------ccCcCHHHHHHHHHHCCCeEEecccCC-CeEEEEEEEEcC
Confidence 78899999999999999999998421 111123577778899999988764322 222344455444
No 97
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.00 E-value=6.2e-09 Score=108.31 Aligned_cols=122 Identities=14% Similarity=0.144 Sum_probs=85.8
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCC--eeEeecCCCCCCCCCCceeEEEeccc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARC 462 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~--~~~~v~d~~~LPfpd~sFDlV~~~~c 462 (595)
+..+|||+|||+|.++..|+.+ .|+++|+++.++..++.+. ...++. +.+...+... +++..+||+|+++.+
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~-~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINI-ERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPP 198 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEECchhh-ccCCCCccEEEECCC
Confidence 3568999999999999999874 6999999999888777554 444543 4455555422 345568999999865
Q ss_pred Cccccc----------C--------------HHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCE
Q 007641 463 RVPWHI----------E--------------GGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWE 518 (595)
Q Consensus 463 ~v~~h~----------d--------------~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~ 518 (595)
++.... + ...++..+.++|+|||+|++.... .+..+..++...||.
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~----------~~~~v~~~~~~~~~~ 268 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN----------SMEALEEAYPDVPFT 268 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc----------CHHHHHHHHHhCCCc
Confidence 432110 1 146788899999999999987531 124677778888876
Q ss_pred EEEE
Q 007641 519 LVSI 522 (595)
Q Consensus 519 ~v~~ 522 (595)
-...
T Consensus 269 ~~~~ 272 (284)
T TIGR03533 269 WLEF 272 (284)
T ss_pred eeee
Confidence 5544
No 98
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.00 E-value=2e-08 Score=104.21 Aligned_cols=124 Identities=15% Similarity=0.184 Sum_probs=86.2
Q ss_pred CEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCC--eeEeecCCCCCCCCCCceeEEEecccCc
Q 007641 391 RVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 391 ~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~--~~~~v~d~~~LPfpd~sFDlV~~~~c~v 464 (595)
.+|||+|||+|.++..|+.. .|+++|+++.++..++.+. ...++. +.+...+... +++...||+|+++.+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~-~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENA-EKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 68999999999999999873 7999999998887776543 344443 4455555432 44445899999986444
Q ss_pred ccc-----------c-------------CHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHH-HcCCEE
Q 007641 465 PWH-----------I-------------EGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIK-AMCWEL 519 (595)
Q Consensus 465 ~~h-----------~-------------d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak-~~Gw~~ 519 (595)
... . ....++..+.++|+|||+|++.... ..-..+..++. ..||..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~---------~q~~~~~~~~~~~~~~~~ 264 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN---------WQQKSLKELLRIKFTWYD 264 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc---------cHHHHHHHHHHhcCCCce
Confidence 321 0 1136788899999999999987532 11245666666 468877
Q ss_pred EEEeec
Q 007641 520 VSISKD 525 (595)
Q Consensus 520 v~~~~~ 525 (595)
+....+
T Consensus 265 ~~~~~D 270 (284)
T TIGR00536 265 VENGRD 270 (284)
T ss_pred eEEecC
Confidence 666555
No 99
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.00 E-value=2.4e-09 Score=107.46 Aligned_cols=95 Identities=17% Similarity=0.042 Sum_probs=70.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCC----------------CeeEeecCCCCCCCC
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI----------------PAISAVMGTERLPFP 450 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi----------------~~~~~v~d~~~LPfp 450 (595)
++.+|||+|||.|..+.+|+++ .|+|+|+++..+..++ .++++ .+.+.+.|...++..
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~----~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFF----AENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHH----HHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 4679999999999999999997 8999999988766543 23332 345566666666432
Q ss_pred -CCceeEEEecccCcccccC---HHHHHHHHHHhccCCcEEEE
Q 007641 451 -GIVFDAVHCARCRVPWHIE---GGKLLLELNRVLRPGGFFIW 489 (595)
Q Consensus 451 -d~sFDlV~~~~c~v~~h~d---~~~lL~El~RvLKPGG~Lvi 489 (595)
...||+|+-..++ +|+. ...++..+.++|+|||++++
T Consensus 113 ~~~~fd~v~D~~~~--~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 113 DLADVDAVYDRAAL--IALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred cCCCeeEEEehHhH--hhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 2579999976533 3443 36899999999999997544
No 100
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.99 E-value=1.6e-09 Score=107.46 Aligned_cols=118 Identities=20% Similarity=0.244 Sum_probs=91.5
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v 464 (595)
+.++|.|||||+|..+..|+++ .|+|+|-|+.| +..|+.+.+++.+...|+...- |...+|+|+++. .+
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~M-----la~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNA-vl 102 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAM-----LAKAAQRLPDATFEEADLRTWK-PEQPTDLLFANA-VL 102 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHH-----HHHHHHhCCCCceecccHhhcC-CCCccchhhhhh-hh
Confidence 5789999999999999999996 78999998665 4555678888888887765553 456799999984 67
Q ss_pred ccccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCE
Q 007641 465 PWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWE 518 (595)
Q Consensus 465 ~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~ 518 (595)
+|-.+...+|..+...|.|||.|.+-.|..+.. .....|.+.+...-|.
T Consensus 103 qWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~de-----psH~~mr~~A~~~p~~ 151 (257)
T COG4106 103 QWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDE-----PSHRLMRETADEAPFA 151 (257)
T ss_pred hhccccHHHHHHHHHhhCCCceEEEECCCccCc-----hhHHHHHHHHhcCchh
Confidence 888899999999999999999999987753322 1124555566555554
No 101
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.95 E-value=2.8e-08 Score=101.64 Aligned_cols=125 Identities=18% Similarity=0.139 Sum_probs=85.6
Q ss_pred CCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCC-CCC-CCCceeEEEecccC
Q 007641 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER-LPF-PGIVFDAVHCARCR 463 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~-LPf-pd~sFDlV~~~~c~ 463 (595)
..+|||+|||+|.++..|+.. .|+++|+++.++..++.+.. ..++ .+...+... ++. ..+.||+|+++.++
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~-~~~~--~~~~~D~~~~l~~~~~~~fDlVv~NPPy 163 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLA-DAGG--TVHEGDLYDALPTALRGRVDILAANAPY 163 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCC--EEEEeechhhcchhcCCCEeEEEECCCC
Confidence 458999999999999998763 69999999998877765543 3333 344444322 221 12579999999765
Q ss_pred cccc------------c---------C----HHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCE
Q 007641 464 VPWH------------I---------E----GGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWE 518 (595)
Q Consensus 464 v~~h------------~---------d----~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~ 518 (595)
+... . + ...++..+.++|+|||+|++.... .....+..+++..||.
T Consensus 164 ~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~---------~~~~~v~~~l~~~g~~ 234 (251)
T TIGR03704 164 VPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE---------RQAPLAVEAFARAGLI 234 (251)
T ss_pred CCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---------chHHHHHHHHHHCCCC
Confidence 5321 0 0 126777788999999999987532 2235677888889988
Q ss_pred EEEEeecc
Q 007641 519 LVSISKDT 526 (595)
Q Consensus 519 ~v~~~~~~ 526 (595)
........
T Consensus 235 ~~~~~~~~ 242 (251)
T TIGR03704 235 ARVASSEE 242 (251)
T ss_pred ceeeEccc
Confidence 75554443
No 102
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.94 E-value=6.4e-09 Score=105.46 Aligned_cols=126 Identities=14% Similarity=0.259 Sum_probs=90.0
Q ss_pred CCCEEEEECCCCchhHHHHhhCCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCccccc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHI 468 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h~ 468 (595)
....|.|+|||-+.++.. ....|..+|+.+. .-.+..+|+.++|+++++.|++++ |+.+...
T Consensus 180 ~~~vIaD~GCGEakiA~~-~~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDvaV~--CLSLMgt 241 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIASS-ERHKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDVAVF--CLSLMGT 241 (325)
T ss_pred CceEEEecccchhhhhhc-cccceeeeeeecC---------------CCceeeccccCCcCccCcccEEEe--eHhhhcc
Confidence 467899999999988751 1237999998643 124567888899999999999998 6667677
Q ss_pred CHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEEeecccCceEEEEEEeCC
Q 007641 469 EGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKDTINKVGIAVYRKPT 539 (595)
Q Consensus 469 d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~~~~~l~~~giaI~~KP~ 539 (595)
+...++.|++|+|||||.|+|..-. .+ ...-..+.+.+..+||.+...... -....+-.|+|+.
T Consensus 242 n~~df~kEa~RiLk~gG~l~IAEv~--SR----f~dv~~f~r~l~~lGF~~~~~d~~-n~~F~lfefkK~~ 305 (325)
T KOG3045|consen 242 NLADFIKEANRILKPGGLLYIAEVK--SR----FSDVKGFVRALTKLGFDVKHKDVS-NKYFTLFEFKKTP 305 (325)
T ss_pred cHHHHHHHHHHHhccCceEEEEehh--hh----cccHHHHHHHHHHcCCeeeehhhh-cceEEEEEEecCC
Confidence 8899999999999999999997421 11 112245777889999997665332 2223344455443
No 103
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.94 E-value=1.2e-09 Score=109.89 Aligned_cols=115 Identities=19% Similarity=0.291 Sum_probs=74.5
Q ss_pred CCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCeeEee-----cCCCCCCCC--CCceeEEEec
Q 007641 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAV-----MGTERLPFP--GIVFDAVHCA 460 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~~~~~v-----~d~~~LPfp--d~sFDlV~~~ 460 (595)
.+.++|||||+|.-++.++.+ +|+|+|+++. |+++|...- ++.... ......++. +++.|+|+|.
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~-----mL~~a~k~~-~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYKEVIATDVSEA-----MLKVAKKHP-PVTYCHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhhhheeecCCHH-----HHHHhhcCC-CcccccCCccccccccccccCCCcceeeehhh
Confidence 448999999999766777774 8999999954 555555432 222211 112234443 7999999999
Q ss_pred ccCcccccCHHHHHHHHHHhccCCc-EEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCE
Q 007641 461 RCRVPWHIEGGKLLLELNRVLRPGG-FFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWE 518 (595)
Q Consensus 461 ~c~v~~h~d~~~lL~El~RvLKPGG-~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~ 518 (595)
.| +||. +...++++++|+||+.| .+.+-. |. . +.-.|.++..++.+.++.
T Consensus 108 qa-~HWF-dle~fy~~~~rvLRk~Gg~iavW~---Y~--d-d~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 108 QA-VHWF-DLERFYKEAYRVLRKDGGLIAVWN---YN--D-DFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hh-HHhh-chHHHHHHHHHHcCCCCCEEEEEE---cc--C-CCcCCHHHHHHHHHHhhc
Confidence 85 5665 88999999999999877 443321 11 1 223344555555555554
No 104
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.92 E-value=8.1e-09 Score=108.15 Aligned_cols=103 Identities=13% Similarity=0.178 Sum_probs=70.0
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHc-CCCeeEeecCCCC-CCCCCCc---eeEEE
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALER-GIPAISAVMGTER-LPFPGIV---FDAVH 458 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~er-gi~~~~~v~d~~~-LPfpd~s---FDlV~ 458 (595)
++.+|||+|||+|..+..|+++ .|+++|+|+.|+..++.+..... ++.+.....+... ++++... .++|+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 4678999999999998888764 69999999999888876554332 3455555666543 4444332 23333
Q ss_pred ecccCcccccC---HHHHHHHHHHhccCCcEEEEEeC
Q 007641 459 CARCRVPWHIE---GGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 459 ~~~c~v~~h~d---~~~lL~El~RvLKPGG~Lvis~p 492 (595)
+.. ....+.+ ...+|++++++|+|||+|+|...
T Consensus 143 ~~g-s~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 143 FPG-STIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred Eec-ccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 221 1222333 36899999999999999998753
No 105
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.91 E-value=1.4e-08 Score=100.45 Aligned_cols=96 Identities=18% Similarity=0.160 Sum_probs=67.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCCCCCCCCceeEEEecccCc
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~LPfpd~sFDlV~~~~c~v 464 (595)
.++.+|||||||+|.++..|+.. .|+++|+++.++..++.++.+ .++. +.+...+......+.+.||+|++..+ +
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~-~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~-~ 154 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQ-LGLHNVSVRHGDGWKGWPAYAPFDRILVTAA-A 154 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHH-CCCCceEEEECCcccCCCcCCCcCEEEEccC-c
Confidence 35789999999999998877764 799999998877766644443 3443 44444444322123478999998752 2
Q ss_pred ccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 465 PWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 465 ~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
. .+...+.+.|+|||+|++..
T Consensus 155 ~------~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 155 P------EIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred h------hhhHHHHHhcCCCcEEEEEE
Confidence 1 23456789999999999864
No 106
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.90 E-value=3.3e-08 Score=96.75 Aligned_cols=99 Identities=15% Similarity=0.096 Sum_probs=69.2
Q ss_pred CCCCEEEEECCCCchhHHHHhh----CCcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCC-CCCCCCceeEEEecc
Q 007641 388 KRTRVVLDVGCGVASFGGFLFD----RGVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTER-LPFPGIVFDAVHCAR 461 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~----r~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~-LPfpd~sFDlV~~~~ 461 (595)
.++.+|||||||+|.++..++. ..|+++|+++.++..++.+.. ..++. +.+...++.. ++.....+|.|+...
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~-~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~ 117 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCD-RFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG 117 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HhCCCCeEEEECchHHHHhhCCCCCCEEEEEC
Confidence 3578999999999999988875 379999999998877765443 34443 3444444422 222223467765532
Q ss_pred cCcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 462 CRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 462 c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
......+|.++.++|+|||+|++..+
T Consensus 118 -----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 118 -----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred -----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 12457899999999999999998864
No 107
>PLN03075 nicotianamine synthase; Provisional
Probab=98.90 E-value=9.9e-09 Score=107.24 Aligned_cols=102 Identities=16% Similarity=0.156 Sum_probs=74.9
Q ss_pred CCCEEEEECCCCchhH-HHHhh-C----CcEEEeCCchhHHHHHHHHHHHcCC--CeeEeecCCCCCCCCCCceeEEEec
Q 007641 389 RTRVVLDVGCGVASFG-GFLFD-R----GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLPFPGIVFDAVHCA 460 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a-~~La~-r----~V~giDisp~di~~aqvq~A~ergi--~~~~~v~d~~~LPfpd~sFDlV~~~ 460 (595)
+.++|||||||.|.++ ..|+. + .++|+|+++.++..|+..+....++ .+.+...++..++-..+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 5789999999977543 33332 2 5999999999888877555333444 2556666665554334789999998
Q ss_pred ccCcccc-cCHHHHHHHHHHhccCCcEEEEEe
Q 007641 461 RCRVPWH-IEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 461 ~c~v~~h-~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
+++.|. .+...+|..+.+.|+|||+|++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 555554 477999999999999999999974
No 108
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.89 E-value=1.5e-08 Score=111.31 Aligned_cols=127 Identities=17% Similarity=0.230 Sum_probs=87.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCCCC----CCCCceeEE
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLP----FPGIVFDAV 457 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~LP----fpd~sFDlV 457 (595)
.++.+|||+|||+|..+.+|++. .|+++|+++.++..++.+. ...|+. +.+...+...++ +..++||.|
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~-~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENA-QRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHH-HHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 35789999999999999888873 6999999998887776444 445654 455556666554 446789999
Q ss_pred Eecc-c----CcccccC----------------HHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHc-
Q 007641 458 HCAR-C----RVPWHIE----------------GGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAM- 515 (595)
Q Consensus 458 ~~~~-c----~v~~h~d----------------~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~- 515 (595)
++.. | .+..+++ ...+|.++.++|||||+|+.++-.++.. +.-..+..++++.
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~-----Ene~~v~~~l~~~~ 404 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPA-----ENEAQIEQFLARHP 404 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh-----hHHHHHHHHHHhCC
Confidence 9642 2 2222222 2478999999999999999886543332 2224555666665
Q ss_pred CCEEE
Q 007641 516 CWELV 520 (595)
Q Consensus 516 Gw~~v 520 (595)
+|.+.
T Consensus 405 ~~~~~ 409 (434)
T PRK14901 405 DWKLE 409 (434)
T ss_pred CcEec
Confidence 57644
No 109
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.87 E-value=1.3e-08 Score=84.85 Aligned_cols=98 Identities=23% Similarity=0.281 Sum_probs=68.3
Q ss_pred EEEEECCCCchhHHHHhh---CCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCC-CCCceeEEEecccCccc-
Q 007641 392 VVLDVGCGVASFGGFLFD---RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF-PGIVFDAVHCARCRVPW- 466 (595)
Q Consensus 392 rVLDIGCGtG~~a~~La~---r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPf-pd~sFDlV~~~~c~v~~- 466 (595)
+|||+|||.|.++..++. ..++++|+++..+..++............+...+...... ....||+|++..+ +.+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~-~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPP-LHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccc-eeeh
Confidence 489999999999988887 3899999998766555421111112233444455444432 4578999999863 222
Q ss_pred ccCHHHHHHHHHHhccCCcEEEEE
Q 007641 467 HIEGGKLLLELNRVLRPGGFFIWS 490 (595)
Q Consensus 467 h~d~~~lL~El~RvLKPGG~Lvis 490 (595)
......++..+.++|+|||++++.
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 335689999999999999999976
No 110
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.87 E-value=6.1e-08 Score=96.20 Aligned_cols=161 Identities=16% Similarity=0.226 Sum_probs=98.4
Q ss_pred cCchHHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeE--e
Q 007641 367 KNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAIS--A 440 (595)
Q Consensus 367 ~~ga~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~--~ 440 (595)
.+.+..+.+.|.+.++. .+.+||+||||||.-+.+++++ .....|+++.... .....+.+.+++.+. .
T Consensus 8 eRNk~pIl~vL~~~l~~-----~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~-sI~a~~~~~~~~Nv~~P~ 81 (204)
T PF06080_consen 8 ERNKDPILEVLKQYLPD-----SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRP-SIRAWIAEAGLPNVRPPL 81 (204)
T ss_pred hhCHhHHHHHHHHHhCc-----cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHh-hHHHHHHhcCCcccCCCe
Confidence 34556677778877764 2336999999999999999885 3334455433211 112233344443221 1
Q ss_pred ecCCCC--CC------CCCCceeEEEecccCccccc---CHHHHHHHHHHhccCCcEEEEEeCCCCC--cCch-------
Q 007641 441 VMGTER--LP------FPGIVFDAVHCARCRVPWHI---EGGKLLLELNRVLRPGGFFIWSATPVYQ--KLPE------- 500 (595)
Q Consensus 441 v~d~~~--LP------fpd~sFDlV~~~~c~v~~h~---d~~~lL~El~RvLKPGG~Lvis~pp~~~--~l~e------- 500 (595)
..|... .| +....||+|+|.. +.|.. ....+|..+.++|+|||.|++.+|..+. ...+
T Consensus 82 ~lDv~~~~w~~~~~~~~~~~~~D~i~~~N--~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~ 159 (204)
T PF06080_consen 82 ALDVSAPPWPWELPAPLSPESFDAIFCIN--MLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDA 159 (204)
T ss_pred EeecCCCCCccccccccCCCCcceeeehh--HHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHH
Confidence 222211 22 2356899999987 33222 2378999999999999999999886543 1111
Q ss_pred ---------hHHHHHHHHHHHHHcCCEEEEEeecccCceEEEEEE
Q 007641 501 ---------DVEIWNAMSQLIKAMCWELVSISKDTINKVGIAVYR 536 (595)
Q Consensus 501 ---------~i~~w~~le~Lak~~Gw~~v~~~~~~l~~~giaI~~ 536 (595)
+++....+..++...|+.++....+- -.-.+.||+
T Consensus 160 sLr~rdp~~GiRD~e~v~~lA~~~GL~l~~~~~MP-ANN~~Lvfr 203 (204)
T PF06080_consen 160 SLRSRDPEWGIRDIEDVEALAAAHGLELEEDIDMP-ANNLLLVFR 203 (204)
T ss_pred HHhcCCCCcCccCHHHHHHHHHHCCCccCcccccC-CCCeEEEEe
Confidence 22334789999999999977654432 222344454
No 111
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.87 E-value=2.5e-08 Score=109.35 Aligned_cols=128 Identities=16% Similarity=0.292 Sum_probs=86.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCC--CCCCceeEEEecc
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP--FPGIVFDAVHCAR 461 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LP--fpd~sFDlV~~~~ 461 (595)
.++.+|||+|||+|..+.+++.+ .|+++|+++.++..++.+ +...|+.+.+...+...++ ++..+||+|++..
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n-~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVREN-LQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH-HHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 35789999999999999888874 699999999988777644 3445666666666665543 3457899999654
Q ss_pred -cCc----------ccccCH----------HHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHc-CCEE
Q 007641 462 -CRV----------PWHIEG----------GKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAM-CWEL 519 (595)
Q Consensus 462 -c~v----------~~h~d~----------~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~-Gw~~ 519 (595)
|.- .|.... ..+|..+.++|||||+|++++..++..-.+ ..+..++++. +|.+
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene-----~~v~~~l~~~~~~~~ 396 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENE-----QQIKAFLARHPDAEL 396 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCH-----HHHHHHHHhCCCCEE
Confidence 211 121111 368999999999999999887544332111 3444555544 5654
Q ss_pred EE
Q 007641 520 VS 521 (595)
Q Consensus 520 v~ 521 (595)
+.
T Consensus 397 ~~ 398 (427)
T PRK10901 397 LD 398 (427)
T ss_pred ec
Confidence 43
No 112
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.87 E-value=2.9e-08 Score=111.17 Aligned_cols=127 Identities=14% Similarity=0.106 Sum_probs=87.7
Q ss_pred CCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCC--eeEeecCCCCCCCCCCceeEEEecccC
Q 007641 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARCR 463 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~--~~~~v~d~~~LPfpd~sFDlV~~~~c~ 463 (595)
..+|||||||+|.++..|+.+ .|+++|+++.++..++.+.. ..++. +.+...+... +++.+.||+|+|+.++
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~-~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAI-KYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHH-HcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 468999999999999888753 79999999988887775543 33432 3344444321 3345689999998755
Q ss_pred ccccc---------------------CH----HHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCE
Q 007641 464 VPWHI---------------------EG----GKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWE 518 (595)
Q Consensus 464 v~~h~---------------------d~----~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~ 518 (595)
+.... +. ..++..+.++|+|||.|++.... ..-..+..++...||.
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~---------~q~~~v~~~~~~~g~~ 287 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF---------KQEEAVTQIFLDHGYN 287 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC---------chHHHHHHHHHhcCCC
Confidence 54211 00 24677889999999999986421 2235777888889998
Q ss_pred EEEEeeccc
Q 007641 519 LVSISKDTI 527 (595)
Q Consensus 519 ~v~~~~~~l 527 (595)
.+....+..
T Consensus 288 ~~~~~~D~~ 296 (506)
T PRK01544 288 IESVYKDLQ 296 (506)
T ss_pred ceEEEecCC
Confidence 776655543
No 113
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.86 E-value=3e-08 Score=104.43 Aligned_cols=120 Identities=13% Similarity=0.119 Sum_probs=83.3
Q ss_pred CEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCC--eeEeecCCCCCCCCCCceeEEEecccCc
Q 007641 391 RVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 391 ~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~--~~~~v~d~~~LPfpd~sFDlV~~~~c~v 464 (595)
.+|||+|||+|.++..|+.+ .|+++|+++.++..++.+. ...++. +.+...+... +++..+||+|+++.+++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~-~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINI-ERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH-HHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 68999999999999999874 7999999999888877554 344442 4455555422 33456899999986543
Q ss_pred ccc------------c--------C----HHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEE
Q 007641 465 PWH------------I--------E----GGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELV 520 (595)
Q Consensus 465 ~~h------------~--------d----~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v 520 (595)
... + + ...++..+.++|+|||+|++.... ....+..++...+|.-.
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~----------~~~~~~~~~~~~~~~~~ 282 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN----------SRVHLEEAYPDVPFTWL 282 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc----------CHHHHHHHHhhCCCEEE
Confidence 210 0 0 146788999999999999986431 12346667777776554
Q ss_pred EE
Q 007641 521 SI 522 (595)
Q Consensus 521 ~~ 522 (595)
..
T Consensus 283 ~~ 284 (307)
T PRK11805 283 EF 284 (307)
T ss_pred Ee
Confidence 44
No 114
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.86 E-value=3.6e-08 Score=100.67 Aligned_cols=155 Identities=15% Similarity=0.218 Sum_probs=103.5
Q ss_pred cCCCCccccCchHHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCC
Q 007641 359 FPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP 436 (595)
Q Consensus 359 Fpggg~~F~~ga~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~ 436 (595)
+-|.|.||.-...++...|...-..........++||||+|.|..+..|+.. .|++.++|+.| +....++|..
T Consensus 64 ~LgRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~M-----r~rL~~kg~~ 138 (265)
T PF05219_consen 64 ILGRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPM-----RWRLSKKGFT 138 (265)
T ss_pred hhcCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHH-----HHHHHhCCCe
Confidence 4566777777777777766533211111125678999999999999999884 89999999664 4555678875
Q ss_pred eeEeecCCCCCCCCCCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeCCCCC-----------cCchhH---
Q 007641 437 AISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQ-----------KLPEDV--- 502 (595)
Q Consensus 437 ~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~-----------~l~e~i--- 502 (595)
++... ...-.+..||+|.|.. ++-.+..|..+|+.|++.|+|+|+++|...-.|. ...+.+
T Consensus 139 vl~~~----~w~~~~~~fDvIscLN-vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~ 213 (265)
T PF05219_consen 139 VLDID----DWQQTDFKFDVISCLN-VLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVK 213 (265)
T ss_pred EEehh----hhhccCCceEEEeehh-hhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCC
Confidence 43221 1222245799999986 3444568899999999999999999987421111 111101
Q ss_pred -HHH----HHHHHHHHHcCCEEEEEe
Q 007641 503 -EIW----NAMSQLIKAMCWELVSIS 523 (595)
Q Consensus 503 -~~w----~~le~Lak~~Gw~~v~~~ 523 (595)
..| ..+.++++.+||+++...
T Consensus 214 g~~~E~~v~~l~~v~~p~GF~v~~~t 239 (265)
T PF05219_consen 214 GATFEEQVSSLVNVFEPAGFEVERWT 239 (265)
T ss_pred CCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 122 455588999999977653
No 115
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.85 E-value=1.8e-08 Score=101.67 Aligned_cols=103 Identities=17% Similarity=0.046 Sum_probs=77.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHH------------HHHcCCCeeEeecCCCCCCCC---C
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQF------------ALERGIPAISAVMGTERLPFP---G 451 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~------------A~ergi~~~~~v~d~~~LPfp---d 451 (595)
++.+||..|||.|.-+.+|+++ .|+|+|+|+..+..+..+. ...++..+.+.++|...++.. .
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 4679999999999999999996 8999999988776543211 112355677888888877642 2
Q ss_pred CceeEEEecccCcccccC-HHHHHHHHHHhccCCcEEEEEe
Q 007641 452 IVFDAVHCARCRVPWHIE-GGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 452 ~sFDlV~~~~c~v~~h~d-~~~lL~El~RvLKPGG~Lvis~ 491 (595)
+.||+|+-..+++..+.+ ...++..|.++|+|||.+++..
T Consensus 123 ~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 123 PVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred CCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 579999876544333333 3799999999999999988764
No 116
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.84 E-value=2e-08 Score=97.67 Aligned_cols=92 Identities=17% Similarity=0.182 Sum_probs=63.5
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCC--------CCCCcee
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP--------FPGIVFD 455 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LP--------fpd~sFD 455 (595)
++.+|||||||+|.++..++.+ .|+++|+++.+ ...+ +.+...+....+ ++.+.||
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~--i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIEN--VDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCC--ceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 5789999999999998888763 49999999742 1112 233334443322 4567899
Q ss_pred EEEecccC---cccccC-------HHHHHHHHHHhccCCcEEEEEe
Q 007641 456 AVHCARCR---VPWHIE-------GGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 456 lV~~~~c~---v~~h~d-------~~~lL~El~RvLKPGG~Lvis~ 491 (595)
+|++..+. -.|..+ ...+|..++++|+|||+|++..
T Consensus 101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 99986421 011121 2578999999999999999864
No 117
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=9.7e-08 Score=99.38 Aligned_cols=131 Identities=21% Similarity=0.300 Sum_probs=90.6
Q ss_pred EEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCCCCCCCCceeEEEecccCccc
Q 007641 392 VVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (595)
Q Consensus 392 rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~ 466 (595)
+|||||||+|.++..|+.+ .|+++|+++..+..|+.+ |...++. +.+...+ .--++. +.||+|+|+.+++..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~N-a~~~~l~~~~~~~~d-lf~~~~-~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAREN-AERNGLVRVLVVQSD-LFEPLR-GKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHH-HHHcCCccEEEEeee-cccccC-CceeEEEeCCCCCCC
Confidence 8999999999999999884 799999999988877754 4445542 2333332 111223 389999999987766
Q ss_pred c---c-------CH--------------HHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcC-CEEEE
Q 007641 467 H---I-------EG--------------GKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMC-WELVS 521 (595)
Q Consensus 467 h---~-------d~--------------~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~G-w~~v~ 521 (595)
. . ++ ..++.++.+.|+|||++++-.-. ..-..+.+++...| |..+.
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~---------~q~~~v~~~~~~~~~~~~v~ 260 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL---------TQGEAVKALFEDTGFFEIVE 260 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC---------CcHHHHHHHHHhcCCceEEE
Confidence 4 1 11 16788899999999999987421 12367888899999 66666
Q ss_pred EeecccCceEEEE
Q 007641 522 ISKDTINKVGIAV 534 (595)
Q Consensus 522 ~~~~~l~~~giaI 534 (595)
...+......+.+
T Consensus 261 ~~~d~~g~~rv~~ 273 (280)
T COG2890 261 TLKDLFGRDRVVL 273 (280)
T ss_pred EEecCCCceEEEE
Confidence 6555443333333
No 118
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.79 E-value=1.7e-08 Score=101.74 Aligned_cols=158 Identities=18% Similarity=0.232 Sum_probs=96.1
Q ss_pred cccCchHHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC------CcEEEeCCchhHHHHHHHHHHHcCCCee
Q 007641 365 QFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR------GVLTMSFAPKDEHEAQVQFALERGIPAI 438 (595)
Q Consensus 365 ~F~~ga~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r------~V~giDisp~di~~aqvq~A~ergi~~~ 438 (595)
.|...+.-....+-.+++.. .....+||+||||.|.....|++- .|.++|++|..+..-..+..... ..+.
T Consensus 49 rFfkdR~wL~~Efpel~~~~--~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~ 125 (264)
T KOG2361|consen 49 RFFKDRNWLLREFPELLPVD--EKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVE 125 (264)
T ss_pred cccchhHHHHHhhHHhhCcc--ccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhc
Confidence 34344433344444444321 122338999999999988888773 68999999986654432211100 1122
Q ss_pred EeecC--C--CCCCCCCCceeEEEecccCcccccC-HHHHHHHHHHhccCCcEEEEEeCCCCCcC----------c----
Q 007641 439 SAVMG--T--ERLPFPGIVFDAVHCARCRVPWHIE-GGKLLLELNRVLRPGGFFIWSATPVYQKL----------P---- 499 (595)
Q Consensus 439 ~~v~d--~--~~LPfpd~sFDlV~~~~c~v~~h~d-~~~lL~El~RvLKPGG~Lvis~pp~~~~l----------~---- 499 (595)
..+.| . ..-|...+++|+|++.+++.--+++ ...+|..++++|||||.|++..-..|... .
T Consensus 126 afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfY 205 (264)
T KOG2361|consen 126 AFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFY 205 (264)
T ss_pred ccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceE
Confidence 22333 2 2346677999999998733322332 37899999999999999999854333210 0
Q ss_pred ---hhH----HHHHHHHHHHHHcCCEEEEEeec
Q 007641 500 ---EDV----EIWNAMSQLIKAMCWELVSISKD 525 (595)
Q Consensus 500 ---e~i----~~w~~le~Lak~~Gw~~v~~~~~ 525 (595)
.+. ..-..+..++..+||..+.....
T Consensus 206 VRgDGT~~YfF~~eeL~~~f~~agf~~~~~~~~ 238 (264)
T KOG2361|consen 206 VRGDGTRAYFFTEEELDELFTKAGFEEVQLEVD 238 (264)
T ss_pred EccCCceeeeccHHHHHHHHHhcccchhcccce
Confidence 000 11267888999999988766544
No 119
>PRK00811 spermidine synthase; Provisional
Probab=98.78 E-value=8.2e-08 Score=99.91 Aligned_cols=103 Identities=11% Similarity=0.058 Sum_probs=72.8
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHc-----CCCeeEeecCCCC-CCCCCCceeEEE
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER-----GIPAISAVMGTER-LPFPGIVFDAVH 458 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~er-----gi~~~~~v~d~~~-LPfpd~sFDlV~ 458 (595)
..++||+||||.|.++..++++ .|+++|+++..+..++..+..-. ...+.+...|... +....+.||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4679999999999999998885 68999999988877765443211 1234455555432 333467899999
Q ss_pred ecccCccccc----CHHHHHHHHHHhccCCcEEEEEeC
Q 007641 459 CARCRVPWHI----EGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 459 ~~~c~v~~h~----d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
+.. .-++.. ....+++.+.++|+|||+|++...
T Consensus 156 ~D~-~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 156 VDS-TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred ECC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 863 122221 236788999999999999998643
No 120
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.78 E-value=6.3e-08 Score=106.15 Aligned_cols=107 Identities=11% Similarity=0.164 Sum_probs=75.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeE--eecCCCCCCC--CCCceeEEEe
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAIS--AVMGTERLPF--PGIVFDAVHC 459 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~--~v~d~~~LPf--pd~sFDlV~~ 459 (595)
.++.+|||+|||+|..+.++++. .|+++|+++.++..++.+. ...|+.+.+ ...+...+++ +.++||+|++
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~-~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENL-KRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHH-HHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 35789999999999999888873 7999999998887776444 345665333 3334443443 5678999996
Q ss_pred cc-----cCcccccC----------------HHHHHHHHHHhccCCcEEEEEeCCCC
Q 007641 460 AR-----CRVPWHIE----------------GGKLLLELNRVLRPGGFFIWSATPVY 495 (595)
Q Consensus 460 ~~-----c~v~~h~d----------------~~~lL~El~RvLKPGG~Lvis~pp~~ 495 (595)
.. +.+..+++ ...+|.++.++|||||+|++++..+.
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 32 12222222 24799999999999999999875443
No 121
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.76 E-value=3.4e-08 Score=105.00 Aligned_cols=136 Identities=22% Similarity=0.312 Sum_probs=88.9
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHc----------CCCeeEeecCCC------CCCC
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALER----------GIPAISAVMGTE------RLPF 449 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~er----------gi~~~~~v~d~~------~LPf 449 (595)
++.+|||||||-|.-+..+... .++|+||+...+.+|..++..-. ...+.+...+.. .++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 6889999999998866666553 78999999999998887762211 123445555532 1232
Q ss_pred CCCceeEEEecccCcccccC----HHHHHHHHHHhccCCcEEEEEeCCC-----------------------C-------
Q 007641 450 PGIVFDAVHCARCRVPWHIE----GGKLLLELNRVLRPGGFFIWSATPV-----------------------Y------- 495 (595)
Q Consensus 450 pd~sFDlV~~~~c~v~~h~d----~~~lL~El~RvLKPGG~Lvis~pp~-----------------------~------- 495 (595)
....||+|-|.++ +|+... ...+|..+...|||||+||.+.|.. |
T Consensus 142 ~~~~FDvVScQFa-lHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~ 220 (331)
T PF03291_consen 142 RSRKFDVVSCQFA-LHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSD 220 (331)
T ss_dssp TTS-EEEEEEES--GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESCC
T ss_pred cCCCcceeehHHH-HHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEeccc
Confidence 3359999999873 454442 2579999999999999999885420 0
Q ss_pred ------------------CcCchhHHHHHHHHHHHHHcCCEEEEEeec
Q 007641 496 ------------------QKLPEDVEIWNAMSQLIKAMCWELVSISKD 525 (595)
Q Consensus 496 ------------------~~l~e~i~~w~~le~Lak~~Gw~~v~~~~~ 525 (595)
...++.+-.|..|.++++..|++++.....
T Consensus 221 ~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~F 268 (331)
T PF03291_consen 221 DFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKKNF 268 (331)
T ss_dssp SS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEEEH
T ss_pred CCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeCCh
Confidence 012334456899999999999998876443
No 122
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.74 E-value=2.5e-07 Score=102.10 Aligned_cols=126 Identities=16% Similarity=0.270 Sum_probs=84.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCCCCCCCCceeEEEecc
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCAR 461 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~LPfpd~sFDlV~~~~ 461 (595)
.++.+|||+|||+|..+.++++. .|+++|+++.++..++.+ +...|+. +.+...+...++ ++.+||+|++..
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~-~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~ 326 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSH-ASALGITIIETIEGDARSFS-PEEQPDAILLDA 326 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHH-HHHhCCCeEEEEeCcccccc-cCCCCCEEEEcC
Confidence 35789999999999988887752 699999999988777644 4455665 345555565554 457899999632
Q ss_pred -c----C------cccccCH----------HHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHc-CCEE
Q 007641 462 -C----R------VPWHIEG----------GKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAM-CWEL 519 (595)
Q Consensus 462 -c----~------v~~h~d~----------~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~-Gw~~ 519 (595)
| . +.|+..+ ..+|..+.++|||||+|++++..+... +.-..+..+++.. +|..
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~-----Ene~~v~~~l~~~~~~~~ 401 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPE-----ENELQIEAFLQRHPEFSA 401 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh-----hHHHHHHHHHHhCCCCEE
Confidence 1 1 1122222 368999999999999999986543322 1123445556555 4654
Q ss_pred E
Q 007641 520 V 520 (595)
Q Consensus 520 v 520 (595)
+
T Consensus 402 ~ 402 (445)
T PRK14904 402 E 402 (445)
T ss_pred e
Confidence 3
No 123
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.74 E-value=9.2e-08 Score=94.47 Aligned_cols=122 Identities=24% Similarity=0.336 Sum_probs=81.9
Q ss_pred CCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCee-EeecCCCC-C--CCCCCceeEEEecc
Q 007641 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAI-SAVMGTER-L--PFPGIVFDAVHCAR 461 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~-~~v~d~~~-L--Pfpd~sFDlV~~~~ 461 (595)
...+||||||.|.+...+|.. +++|+|+...-+..+..+ +...++.++ +...++.. + -++++++|.|+..+
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~-~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRK-AEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHH-HHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHH-HHhhcccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 348999999999999999884 899999998877776544 444566654 44445543 2 25678999999876
Q ss_pred cCcccccC--------HHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHH--cCCEEEE
Q 007641 462 CRVPWHIE--------GGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKA--MCWELVS 521 (595)
Q Consensus 462 c~v~~h~d--------~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~--~Gw~~v~ 521 (595)
+ -+|... ...+|..+.++|+|||.|.+.+ .....+..+...+.. .+|..+.
T Consensus 97 P-DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T--------D~~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 97 P-DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT--------DVEEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp ------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE--------S-HHHHHHHHHHHHHHSTTEEEE-
T ss_pred C-CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe--------CCHHHHHHHHHHHHhcCcCeEEcc
Confidence 3 455431 1589999999999999999875 223445566666665 4777654
No 124
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.72 E-value=2.8e-08 Score=103.53 Aligned_cols=105 Identities=23% Similarity=0.308 Sum_probs=78.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHc------CCCeeEeecCC------CCCCCCCC
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALER------GIPAISAVMGT------ERLPFPGI 452 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~er------gi~~~~~v~d~------~~LPfpd~ 452 (595)
.++..+||+|||-|.-+..+..+ .++|+||+...+..|+.++-.-+ ..++.++.+|. ..+++++.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 35788999999999877666554 78999999988888876653222 22456666662 34567777
Q ss_pred ceeEEEecccCccccc----CHHHHHHHHHHhccCCcEEEEEeCC
Q 007641 453 VFDAVHCARCRVPWHI----EGGKLLLELNRVLRPGGFFIWSATP 493 (595)
Q Consensus 453 sFDlV~~~~c~v~~h~----d~~~lL~El~RvLKPGG~Lvis~pp 493 (595)
+||+|-|.+| +|+.. ....+|+.+.+.|||||+||-+.|.
T Consensus 196 ~fDivScQF~-~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 196 RFDIVSCQFA-FHYAFETEESARIALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred Ccceeeeeee-EeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence 7999999874 34433 2368999999999999999988653
No 125
>PHA03411 putative methyltransferase; Provisional
Probab=98.72 E-value=1.3e-07 Score=97.83 Aligned_cols=121 Identities=15% Similarity=0.123 Sum_probs=83.1
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v 464 (595)
...+|||+|||+|.++..++.+ .|+++|+++.++..++ ++...+.+...+...+. ....||+|+++.++.
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar-----~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~ 137 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGK-----RLLPEAEWITSDVFEFE-SNEKFDVVISNPPFG 137 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHH-----HhCcCCEEEECchhhhc-ccCCCcEEEEcCCcc
Confidence 3568999999999998888663 6999999987654443 33223455666665554 346899999987655
Q ss_pred ccccC-------------------HHHHHHHHHHhccCCcEEEEE--eCCCCCc-CchhHHHHHHHHHHHHHcCCEEE
Q 007641 465 PWHIE-------------------GGKLLLELNRVLRPGGFFIWS--ATPVYQK-LPEDVEIWNAMSQLIKAMCWELV 520 (595)
Q Consensus 465 ~~h~d-------------------~~~lL~El~RvLKPGG~Lvis--~pp~~~~-l~e~i~~w~~le~Lak~~Gw~~v 520 (595)
+.... ...++..+.++|+|+|.+++. ..|+|+. +.. .++..+++..||...
T Consensus 138 ~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~-----~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 138 KINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKS-----NKYLKWSKQTGLVTY 210 (279)
T ss_pred ccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCH-----HHHHHHHHhcCcEec
Confidence 42211 135677788999999987765 3344432 222 578889999999753
No 126
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.71 E-value=1.2e-07 Score=100.57 Aligned_cols=108 Identities=17% Similarity=0.090 Sum_probs=72.6
Q ss_pred HHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCC
Q 007641 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTE 445 (595)
Q Consensus 372 ~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~ 445 (595)
.+...+.+.+.. .++.+|||||||+|.++..|++. .|+++|+++.++..++... ...++. +.+...+..
T Consensus 67 ~l~a~ll~~L~i----~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l-~~~g~~nV~~i~gD~~ 141 (322)
T PRK13943 67 SLMALFMEWVGL----DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNV-RRLGIENVIFVCGDGY 141 (322)
T ss_pred HHHHHHHHhcCC----CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHH-HHcCCCcEEEEeCChh
Confidence 344444444432 35789999999999999999873 3899999998877666433 344554 344445544
Q ss_pred CCCCCCCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 446 RLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 446 ~LPfpd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
..+.....||+|++.. .+. .+...+.+.|+|||++++..
T Consensus 142 ~~~~~~~~fD~Ii~~~-g~~------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 142 YGVPEFAPYDVIFVTV-GVD------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hcccccCCccEEEECC-chH------HhHHHHHHhcCCCCEEEEEe
Confidence 4444446799999864 121 22345778999999998853
No 127
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.70 E-value=4.3e-07 Score=100.07 Aligned_cols=127 Identities=15% Similarity=0.251 Sum_probs=83.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCCCC--CCCCceeEEEe
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLP--FPGIVFDAVHC 459 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~LP--fpd~sFDlV~~ 459 (595)
.++.+|||+|||+|.++.+++.+ .|+++|+++..+..++.+ +...|+. +.+...+...++ ++ +.||+|++
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n-~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~ 326 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEEN-AKRLGLTNIETKALDARKVHEKFA-EKFDKILV 326 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCeEEEEeCCcccccchhc-ccCCEEEE
Confidence 35789999999999999888873 699999999887776644 3445554 445555555442 34 78999997
Q ss_pred cc-cC----cccc------cCH----------HHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHc-CC
Q 007641 460 AR-CR----VPWH------IEG----------GKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAM-CW 517 (595)
Q Consensus 460 ~~-c~----v~~h------~d~----------~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~-Gw 517 (595)
.. |. +..+ ... ..+|..+.++|||||+|++++..++..- .-..+..+++.. .|
T Consensus 327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~E-----ne~vv~~~l~~~~~~ 401 (444)
T PRK14902 327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEE-----NEEVIEAFLEEHPEF 401 (444)
T ss_pred cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhh-----hHHHHHHHHHhCCCc
Confidence 54 21 1111 111 3579999999999999998754333221 113445556655 37
Q ss_pred EEEE
Q 007641 518 ELVS 521 (595)
Q Consensus 518 ~~v~ 521 (595)
+++.
T Consensus 402 ~~~~ 405 (444)
T PRK14902 402 ELVP 405 (444)
T ss_pred EEec
Confidence 6654
No 128
>PRK01581 speE spermidine synthase; Validated
Probab=98.67 E-value=3.3e-07 Score=98.28 Aligned_cols=160 Identities=13% Similarity=0.072 Sum_probs=97.0
Q ss_pred cCCCCccccCchHH-HHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHH--
Q 007641 359 FPGGGTQFKNGALH-YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFAL-- 431 (595)
Q Consensus 359 Fpggg~~F~~ga~~-yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~-- 431 (595)
|-.|..++...... |...|.. .+... ....++||+||||.|..++.+++. .|+++|+++.++..|......
T Consensus 121 ~LDG~~Q~se~DE~iYHE~Lvh-p~m~~-h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~ 198 (374)
T PRK01581 121 YLDKQLQFSSVDEQIYHEALVH-PIMSK-VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVS 198 (374)
T ss_pred EECCeeccccccHHHHHHHHHH-HHHHh-CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccch
Confidence 44444455443333 4444433 22222 234679999999999998888874 699999998776665521110
Q ss_pred -Hc----CCCeeEeecCCCC-CCCCCCceeEEEecccCccc-----ccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCch
Q 007641 432 -ER----GIPAISAVMGTER-LPFPGIVFDAVHCARCRVPW-----HIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPE 500 (595)
Q Consensus 432 -er----gi~~~~~v~d~~~-LPfpd~sFDlV~~~~c~v~~-----h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e 500 (595)
.+ ...+.+.+.|+.. +.-..+.||+|++... -+. ......++..+++.|+|||+|++.....+.
T Consensus 199 ~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~---- 273 (374)
T PRK01581 199 LNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPAD---- 273 (374)
T ss_pred hccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhh----
Confidence 01 2234455555432 3444568999998741 111 112257899999999999999886432211
Q ss_pred hHHHHHHHHHHHHHcCCEEEEEeec
Q 007641 501 DVEIWNAMSQLIKAMCWELVSISKD 525 (595)
Q Consensus 501 ~i~~w~~le~Lak~~Gw~~v~~~~~ 525 (595)
....+..+...++..++........
T Consensus 274 ~~~~~~~i~~tL~~af~~v~~y~t~ 298 (374)
T PRK01581 274 APLVYWSIGNTIEHAGLTVKSYHTI 298 (374)
T ss_pred hHHHHHHHHHHHHHhCCceEEEEEe
Confidence 1233344777788889887665554
No 129
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.66 E-value=1.2e-06 Score=85.70 Aligned_cols=120 Identities=19% Similarity=0.188 Sum_probs=87.1
Q ss_pred CCCCEEEEECCCCchhHHHHhh----CCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecC-C-CCCCCCCCceeEEEecc
Q 007641 388 KRTRVVLDVGCGVASFGGFLFD----RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMG-T-ERLPFPGIVFDAVHCAR 461 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~----r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d-~-~~LPfpd~sFDlV~~~~ 461 (595)
.++.+++|||||+|+++..++. ..|+++|-++..+...+.+ +...+++.+..+.+ + +-|+-.+ +||.|+...
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N-~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGG 110 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERN-AARFGVDNLEVVEGDAPEALPDLP-SPDAIFIGG 110 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHH-HHHhCCCcEEEEeccchHhhcCCC-CCCEEEECC
Confidence 4788999999999999998884 2899999988776555544 34446776555544 3 3444222 799999976
Q ss_pred cCcccccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCC-EEEEE
Q 007641 462 CRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCW-ELVSI 522 (595)
Q Consensus 462 c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw-~~v~~ 522 (595)
. .....+|..+...|||||++++..- .++....+.+.++..|| +++..
T Consensus 111 g-----~~i~~ile~~~~~l~~ggrlV~nai--------tlE~~~~a~~~~~~~g~~ei~~v 159 (187)
T COG2242 111 G-----GNIEEILEAAWERLKPGGRLVANAI--------TLETLAKALEALEQLGGREIVQV 159 (187)
T ss_pred C-----CCHHHHHHHHHHHcCcCCeEEEEee--------cHHHHHHHHHHHHHcCCceEEEE
Confidence 2 3567999999999999999998742 13444566677888899 55544
No 130
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.65 E-value=5.9e-08 Score=106.64 Aligned_cols=128 Identities=15% Similarity=0.197 Sum_probs=85.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCCCC-CCCCceeEEEec
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLP-FPGIVFDAVHCA 460 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~LP-fpd~sFDlV~~~ 460 (595)
.++.+|||+|||+|..+.+++.. .|+++|+++..+..+..+ +...|+. +.+...+...++ +..+.||+|++.
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n-~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKH-AKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHH-HHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 45789999999999988888763 699999999988777644 4455665 345566666665 456789999974
Q ss_pred c-cC----cccccC----------------HHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHH-cCCE
Q 007641 461 R-CR----VPWHIE----------------GGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKA-MCWE 518 (595)
Q Consensus 461 ~-c~----v~~h~d----------------~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~-~Gw~ 518 (595)
. |. +..+++ ...+|..+.++|||||++++++..+...- .-..+..++.. .+|.
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eE-----ne~vv~~fl~~~~~~~ 389 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEE-----NTEVVKRFVYEQKDAE 389 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhh-----CHHHHHHHHHhCCCcE
Confidence 3 21 111111 13678999999999999999875433221 11344455543 3565
Q ss_pred EEE
Q 007641 519 LVS 521 (595)
Q Consensus 519 ~v~ 521 (595)
++.
T Consensus 390 ~~~ 392 (431)
T PRK14903 390 VID 392 (431)
T ss_pred Eec
Confidence 443
No 131
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.64 E-value=9.4e-08 Score=98.37 Aligned_cols=105 Identities=14% Similarity=0.196 Sum_probs=74.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCCCCCCCCceeEEEecc
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCAR 461 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~LPfpd~sFDlV~~~~ 461 (595)
.++.+|||+|||+|..+.+|+++ .|+++|+++..+..++.++. ..++. +.+...+...++.....||+|++..
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~-~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANIN-RCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHH-HcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 35789999999999999888763 69999999988877765544 34554 4455556555555556799999743
Q ss_pred -cC----cccc------cC----------HHHHHHHHHHhccCCcEEEEEeCC
Q 007641 462 -CR----VPWH------IE----------GGKLLLELNRVLRPGGFFIWSATP 493 (595)
Q Consensus 462 -c~----v~~h------~d----------~~~lL~El~RvLKPGG~Lvis~pp 493 (595)
|. +..+ .. ...+|..+.++|||||+|++++-.
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 21 1111 10 135899999999999999988654
No 132
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.63 E-value=4.9e-07 Score=93.34 Aligned_cols=103 Identities=14% Similarity=0.086 Sum_probs=69.5
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcC----CCeeEeecCCCC-CCCCCCceeEEEe
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERG----IPAISAVMGTER-LPFPGIVFDAVHC 459 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~erg----i~~~~~v~d~~~-LPfpd~sFDlV~~ 459 (595)
..++||+||||+|.++..++++ .|+++|+++..+..++..+....+ ..+.+...+... +....+.||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 3569999999999999888764 689999998877766644322211 123334444321 2222468999998
Q ss_pred cccCcccccC----HHHHHHHHHHhccCCcEEEEEeC
Q 007641 460 ARCRVPWHIE----GGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 460 ~~c~v~~h~d----~~~lL~El~RvLKPGG~Lvis~p 492 (595)
... .+.... ...+++.+.++|+|||+|++...
T Consensus 152 D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 152 DST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred eCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 642 222221 36888999999999999998743
No 133
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.62 E-value=9.3e-08 Score=95.54 Aligned_cols=109 Identities=22% Similarity=0.266 Sum_probs=70.0
Q ss_pred HHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCC-CeeEeecCC
Q 007641 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGT 444 (595)
Q Consensus 371 ~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi-~~~~~v~d~ 444 (595)
......+.+.+.. .++.+|||||||+|++++.|+.. .|+++|+.+.....|+.+++. .++ ++.+...+.
T Consensus 58 P~~~a~~l~~L~l----~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~-~~~~nv~~~~gdg 132 (209)
T PF01135_consen 58 PSMVARMLEALDL----KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLAR-LGIDNVEVVVGDG 132 (209)
T ss_dssp HHHHHHHHHHTTC-----TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHH-HTTHSEEEEES-G
T ss_pred HHHHHHHHHHHhc----CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHH-hccCceeEEEcch
Confidence 4445556566553 46899999999999999888873 488999998877777655443 344 445555553
Q ss_pred C-CCCCCCCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 445 E-RLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 445 ~-~LPfpd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
. .++ ....||.|++.. .+. . +-..+.+.||+||+|++-..
T Consensus 133 ~~g~~-~~apfD~I~v~~-a~~-~-----ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 133 SEGWP-EEAPFDRIIVTA-AVP-E-----IPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GGTTG-GG-SEEEEEESS-BBS-S-------HHHHHTEEEEEEEEEEES
T ss_pred hhccc-cCCCcCEEEEee-ccc-h-----HHHHHHHhcCCCcEEEEEEc
Confidence 2 222 336799999975 232 1 12346777999999998643
No 134
>PRK04457 spermidine synthase; Provisional
Probab=98.62 E-value=9.1e-08 Score=98.56 Aligned_cols=103 Identities=15% Similarity=0.186 Sum_probs=70.9
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHc-CCCeeEeecCCCC-CCCCCCceeEEEecc-
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER-GIPAISAVMGTER-LPFPGIVFDAVHCAR- 461 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~er-gi~~~~~v~d~~~-LPfpd~sFDlV~~~~- 461 (595)
..++|||||||.|.++.+|+.+ .|+++|+++..+..++..+.... ...+.+...|... +.-....||+|++..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~ 145 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGF 145 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCC
Confidence 4679999999999999988774 79999999887776664443221 1234455555422 222236799999853
Q ss_pred --cCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 462 --CRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 462 --c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
..++.+.....++..+.++|+|||+|++..
T Consensus 146 ~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 146 DGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 011112233799999999999999999853
No 135
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.62 E-value=4.6e-08 Score=97.84 Aligned_cols=134 Identities=16% Similarity=0.279 Sum_probs=101.5
Q ss_pred CCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCccc
Q 007641 390 TRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~ 466 (595)
...++|||||.|.+..+|... .++-+|.+..|+..++ -+...++....++.|-+.|+|.+++||+|+++. .+||
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~--~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSl-slHW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCR--DAQDPSIETSYFVGDEEFLDFKENSVDLIISSL-SLHW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhh--ccCCCceEEEEEecchhcccccccchhhhhhhh-hhhh
Confidence 568999999999999999886 5788899876654432 233346667778888899999999999999985 5788
Q ss_pred ccCHHHHHHHHHHhccCCcEEEEEeC---CCCC--------------cCchhHHH---HHHHHHHHHHcCCEEEEEeecc
Q 007641 467 HIEGGKLLLELNRVLRPGGFFIWSAT---PVYQ--------------KLPEDVEI---WNAMSQLIKAMCWELVSISKDT 526 (595)
Q Consensus 467 h~d~~~lL~El~RvLKPGG~Lvis~p---p~~~--------------~l~e~i~~---w~~le~Lak~~Gw~~v~~~~~~ 526 (595)
.-+....+..+...|||+|.|+-+.. ..|. -...++.. -+++..|+.++||..+....+.
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDtDE 229 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDTDE 229 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceecccc
Confidence 88889999999999999999986521 1111 01111222 2678889999999998877664
No 136
>PLN02366 spermidine synthase
Probab=98.59 E-value=8.1e-07 Score=93.72 Aligned_cols=104 Identities=17% Similarity=0.091 Sum_probs=71.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHc----CCCeeEeecCCCC-C-CCCCCceeEEE
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER----GIPAISAVMGTER-L-PFPGIVFDAVH 458 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~er----gi~~~~~v~d~~~-L-Pfpd~sFDlV~ 458 (595)
..++||+||||.|.++.+++++ .|+.+||++..+..++..+.... ...+.+...|+.. + ..+.+.||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 4789999999999999999885 68899999887776654443211 1224445555321 1 12356899999
Q ss_pred ecccCccccc----CHHHHHHHHHHhccCCcEEEEEeCC
Q 007641 459 CARCRVPWHI----EGGKLLLELNRVLRPGGFFIWSATP 493 (595)
Q Consensus 459 ~~~c~v~~h~----d~~~lL~El~RvLKPGG~Lvis~pp 493 (595)
+.. .-++.. -...+++.+.++|+|||+|++....
T Consensus 171 ~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s 208 (308)
T PLN02366 171 VDS-SDPVGPAQELFEKPFFESVARALRPGGVVCTQAES 208 (308)
T ss_pred EcC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCC
Confidence 853 222222 2357899999999999999875443
No 137
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.58 E-value=4e-07 Score=87.19 Aligned_cols=96 Identities=17% Similarity=0.210 Sum_probs=67.8
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCccc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPW 466 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~ 466 (595)
++.+|||||||+|.++..|+++ .|+++|+++.++..++..++. ...+.+...++..+++++..||+|+++. ++
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~d~vi~n~---Py 87 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQPYKVVGNL---PY 87 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCCCEEEECC---Cc
Confidence 4679999999999999999986 799999998876666543322 1235566777888888877899999874 44
Q ss_pred ccCHHHHHHHHHHh--ccCCcEEEEE
Q 007641 467 HIEGGKLLLELNRV--LRPGGFFIWS 490 (595)
Q Consensus 467 h~d~~~lL~El~Rv--LKPGG~Lvis 490 (595)
+... .++..+... +.++|+|++-
T Consensus 88 ~~~~-~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 88 NIST-PILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred ccHH-HHHHHHHhcCCCcceEEEEEE
Confidence 4422 333333322 4578888775
No 138
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.57 E-value=6.5e-07 Score=90.76 Aligned_cols=98 Identities=10% Similarity=0.006 Sum_probs=69.4
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCC--eeEeecCCCC-CC-----CCCCcee
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTER-LP-----FPGIVFD 455 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~--~~~~v~d~~~-LP-----fpd~sFD 455 (595)
+.++|||||||+|..+..|+.. .|+++|+++..+..++..+++ .++. +.+...++.. |+ .+...||
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~-~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKK-AGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 3679999999999987777653 799999999887777655544 4443 3445555422 22 1246899
Q ss_pred EEEecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 456 AVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 456 lV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
+|++.. .......++..+.++|||||++++..
T Consensus 147 ~VfiDa----~k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 147 FAFVDA----DKPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEEECC----CHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 999863 11233588999999999999988753
No 139
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.55 E-value=1.3e-07 Score=94.54 Aligned_cols=137 Identities=15% Similarity=0.109 Sum_probs=82.8
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCcc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~ 465 (595)
...++||.|||.|..+..|+-. .|..++..+..+..|+..+.....--..++..+++..-.+.+.||+|.+.+|+.+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 4679999999999999888764 6777777766665554322221122234555666666444579999999996543
Q ss_pred ccc-CHHHHHHHHHHhccCCcEEEEEeCC------CCCcCchh-HHHHHHHHHHHHHcCCEEEEEeec
Q 007641 466 WHI-EGGKLLLELNRVLRPGGFFIWSATP------VYQKLPED-VEIWNAMSQLIKAMCWELVSISKD 525 (595)
Q Consensus 466 ~h~-d~~~lL~El~RvLKPGG~Lvis~pp------~~~~l~e~-i~~w~~le~Lak~~Gw~~v~~~~~ 525 (595)
.+- +...+|..+...|+|+|+++|-... .|+..... .+.-..+.++++++|+.++.....
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 332 3479999999999999999986321 12111111 112367888999999999887544
No 140
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.55 E-value=5.3e-07 Score=90.64 Aligned_cols=131 Identities=18% Similarity=0.137 Sum_probs=82.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCC----------------CeeEeecCCCCCCC
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI----------------PAISAVMGTERLPF 449 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi----------------~~~~~v~d~~~LPf 449 (595)
.++.+||..|||.|..+.+|+++ .|+|+|+++..+..+. .+.++ .+.+.++|...++-
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~----~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAF----EENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHH----HHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHH----HHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 35679999999999999999997 7999999987654442 22221 12345566666653
Q ss_pred CC-CceeEEEecccCccccc-CHHHHHHHHHHhccCCcEEEEE-e-CCCCCc-CchhHHHHHHHHHHHHHcCCEEEEEe
Q 007641 450 PG-IVFDAVHCARCRVPWHI-EGGKLLLELNRVLRPGGFFIWS-A-TPVYQK-LPEDVEIWNAMSQLIKAMCWELVSIS 523 (595)
Q Consensus 450 pd-~sFDlV~~~~c~v~~h~-d~~~lL~El~RvLKPGG~Lvis-~-pp~~~~-l~e~i~~w~~le~Lak~~Gw~~v~~~ 523 (595)
.. +.||+|+=..+++-.++ ....+...|.++|+|||.+++. . .+.... -|.-.-.-..+..++. .+|++....
T Consensus 112 ~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEE
T ss_pred hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEe
Confidence 33 47999996544333333 3479999999999999994433 2 111111 1111112267777777 788876654
No 141
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.54 E-value=3.9e-06 Score=83.32 Aligned_cols=131 Identities=14% Similarity=0.068 Sum_probs=77.9
Q ss_pred CceeecCCCCccccCchHHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHH
Q 007641 354 GEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFA 430 (595)
Q Consensus 354 g~~~~Fpggg~~F~~ga~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A 430 (595)
|..+..|.+. .++.........+...+... ..+.+|||+|||+|.++..++.+ .|+++|+++..+..+..+..
T Consensus 22 g~~l~~~~~~-~~Rp~~d~v~e~l~~~l~~~---~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~ 97 (199)
T PRK10909 22 GRKLPVPDSP-GLRPTTDRVRETLFNWLAPV---IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLA 97 (199)
T ss_pred CCEeCCCCCC-CcCcCCHHHHHHHHHHHhhh---cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHH
Confidence 3444444422 22344444444444444321 23579999999999999865442 79999999887766654433
Q ss_pred HHcCCC-eeEeecCCCC-CCCCCCceeEEEecccCcccccC-HHHHHHHHHH--hccCCcEEEEEeC
Q 007641 431 LERGIP-AISAVMGTER-LPFPGIVFDAVHCARCRVPWHIE-GGKLLLELNR--VLRPGGFFIWSAT 492 (595)
Q Consensus 431 ~ergi~-~~~~v~d~~~-LPfpd~sFDlV~~~~c~v~~h~d-~~~lL~El~R--vLKPGG~Lvis~p 492 (595)
. .++. +.+...+... ++.....||+|++..++ ... ...++..+.. +|+|+|.+++..+
T Consensus 98 ~-~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy---~~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 98 T-LKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF---RKGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred H-hCCCcEEEEEchHHHHHhhcCCCceEEEECCCC---CCChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 3 3443 4455555432 33234569999998742 222 2344454444 4899999998854
No 142
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.54 E-value=1e-06 Score=97.21 Aligned_cols=133 Identities=18% Similarity=0.145 Sum_probs=88.0
Q ss_pred HHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCC----
Q 007641 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTE---- 445 (595)
Q Consensus 373 yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~---- 445 (595)
+++.+.+.+.. .++.+|||+|||+|.++..|+.+ .|+|+|+++.++..+..+. ...++. +.+...+..
T Consensus 285 l~~~vl~~l~~----~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~-~~~~~~~v~~~~~d~~~~l~ 359 (443)
T PRK13168 285 MVARALEWLDP----QPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENA-RRNGLDNVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHhcC----CCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHH-HHcCCCceEEEEeChHHhhh
Confidence 44444444432 35689999999999999999885 7999999999988877543 344443 455555543
Q ss_pred CCCCCCCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHH-HHHHHHHHHcCCEEEEEee
Q 007641 446 RLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIW-NAMSQLIKAMCWELVSISK 524 (595)
Q Consensus 446 ~LPfpd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w-~~le~Lak~~Gw~~v~~~~ 524 (595)
.+++.+.+||+|++..++. ....++..+.+ |+|+++++++-.| ..+ +++..| ...||++.....
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~----g~~~~~~~l~~-~~~~~ivyvSCnp---------~tlaRDl~~L-~~~gY~l~~i~~ 424 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRA----GAAEVMQALAK-LGPKRIVYVSCNP---------ATLARDAGVL-VEAGYRLKRAGM 424 (443)
T ss_pred hhhhhcCCCCEEEECcCCc----ChHHHHHHHHh-cCCCeEEEEEeCh---------HHhhccHHHH-hhCCcEEEEEEE
Confidence 2345567899999986432 23355555555 6999999998543 122 344433 457898876654
Q ss_pred c
Q 007641 525 D 525 (595)
Q Consensus 525 ~ 525 (595)
.
T Consensus 425 ~ 425 (443)
T PRK13168 425 L 425 (443)
T ss_pred e
Confidence 3
No 143
>PHA03412 putative methyltransferase; Provisional
Probab=98.53 E-value=4e-07 Score=92.45 Aligned_cols=91 Identities=12% Similarity=0.101 Sum_probs=64.5
Q ss_pred CCEEEEECCCCchhHHHHhhC-------CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEeccc
Q 007641 390 TRVVLDVGCGVASFGGFLFDR-------GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARC 462 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r-------~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c 462 (595)
+.+|||+|||+|.++..++.+ .|+++||++.++..++ .....+.+...+....++ +.+||+|+++.+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar-----~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPP 123 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGK-----RIVPEATWINADALTTEF-DTLFDMAISNPP 123 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHH-----hhccCCEEEEcchhcccc-cCCccEEEECCC
Confidence 679999999999999887652 6999999977655554 222234556666655554 468999999986
Q ss_pred Cccccc-C----------HHHHHHHHHHhccCCcE
Q 007641 463 RVPWHI-E----------GGKLLLELNRVLRPGGF 486 (595)
Q Consensus 463 ~v~~h~-d----------~~~lL~El~RvLKPGG~ 486 (595)
++.... + ...++..+.|+|+||+.
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 653221 1 23688888898887775
No 144
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.52 E-value=8.3e-07 Score=103.18 Aligned_cols=124 Identities=15% Similarity=0.114 Sum_probs=85.9
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCC---CeeEeecCCCC-CCCCCCceeEEEecc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI---PAISAVMGTER-LPFPGIVFDAVHCAR 461 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi---~~~~~v~d~~~-LPfpd~sFDlV~~~~ 461 (595)
++++|||+|||+|.++.+++.. .|+++|+++.++..++.+++.. ++ .+.+...+... +.-....||+|++..
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~n-g~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALN-GLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh-CCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 3679999999999999999975 5999999999998887666543 33 24555566432 211146899999987
Q ss_pred cCccccc----------CHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEE
Q 007641 462 CRVPWHI----------EGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSI 522 (595)
Q Consensus 462 c~v~~h~----------d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~ 522 (595)
+.+.... +...++..+.++|+|||+|++.... .... .....+...||.+...
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~--~~~~-------~~~~~~~~~g~~~~~i 678 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK--RGFK-------MDEEGLAKLGLKAEEI 678 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC--ccCC-------hhHHHHHhCCCeEEEE
Confidence 5443211 1246788899999999999887532 1111 1255667788876554
No 145
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=1.8e-06 Score=88.04 Aligned_cols=120 Identities=15% Similarity=0.098 Sum_probs=86.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCCCCCCCCceeEEEecc
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCAR 461 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~LPfpd~sFDlV~~~~ 461 (595)
.++.+|||.|.|+|.++.+|+.. .|+++++-......|+.++..-.-.+ +.+...|....-+++ .||+|+.-.
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~LDm 171 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVFLDL 171 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEEEcC
Confidence 46899999999999999999963 89999999877777766654432223 444445555444444 899998752
Q ss_pred cCcccccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEE
Q 007641 462 CRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSI 522 (595)
Q Consensus 462 c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~ 522 (595)
++|..+|..++.+|+|||.+++..|. ++.-......++..||..+..
T Consensus 172 ------p~PW~~le~~~~~Lkpgg~~~~y~P~--------veQv~kt~~~l~~~g~~~ie~ 218 (256)
T COG2519 172 ------PDPWNVLEHVSDALKPGGVVVVYSPT--------VEQVEKTVEALRERGFVDIEA 218 (256)
T ss_pred ------CChHHHHHHHHHHhCCCcEEEEEcCC--------HHHHHHHHHHHHhcCccchhh
Confidence 37889999999999999999998764 233344445566668875543
No 146
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.49 E-value=8.3e-07 Score=89.90 Aligned_cols=122 Identities=15% Similarity=0.114 Sum_probs=76.8
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCee-EeecCCC-----CCCCCCCceeEEEe
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAI-SAVMGTE-----RLPFPGIVFDAVHC 459 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~-~~v~d~~-----~LPfpd~sFDlV~~ 459 (595)
.+.+|||||||+|.|+..|+++ .|+++|+++.+++.... ....+. +...+.. .++..-..||++++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~-----~~~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsfi 149 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLR-----QDERVKVLERTNIRYVTPADIFPDFATFDVSFI 149 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHh-----cCCCeeEeecCCcccCCHhHcCCCceeeeEEEe
Confidence 5779999999999999999886 69999999876654222 222211 1111222 22222236787777
Q ss_pred cccCcccccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCch-------------hHHHHHHHHHHHHHcCCEEEEEeec
Q 007641 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPE-------------DVEIWNAMSQLIKAMCWELVSISKD 525 (595)
Q Consensus 460 ~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e-------------~i~~w~~le~Lak~~Gw~~v~~~~~ 525 (595)
+.. .+|..+.++|+| |.+++..-|-|.--++ ....-..+...+...||.+.....-
T Consensus 150 S~~---------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 218 (228)
T TIGR00478 150 SLI---------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKIIFS 218 (228)
T ss_pred ehH---------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeEEEC
Confidence 641 357889999999 8888776554432111 1122356666778889987765443
No 147
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.49 E-value=7.2e-07 Score=90.25 Aligned_cols=99 Identities=19% Similarity=0.274 Sum_probs=78.9
Q ss_pred CEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCC-CeeEeecCCCCC---CCCCCceeEEEeccc
Q 007641 391 RVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTERL---PFPGIVFDAVHCARC 462 (595)
Q Consensus 391 ~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi-~~~~~v~d~~~L---Pfpd~sFDlV~~~~c 462 (595)
..+||||||.|.+...+|++ +++||++...-+..+. +.+.+.++ .+.+...++..+ -+++++.|.|+..++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l-~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKAL-KKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHH-HHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 58999999999999999996 8999999987775554 66778888 666666664322 245669999999874
Q ss_pred CcccccCH--------HHHHHHHHHhccCCcEEEEEe
Q 007641 463 RVPWHIEG--------GKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 463 ~v~~h~d~--------~~lL~El~RvLKPGG~Lvis~ 491 (595)
-+|+... ..+|..+.++|+|||.|.+.+
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 6887532 489999999999999999874
No 148
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.1e-06 Score=87.52 Aligned_cols=96 Identities=19% Similarity=0.251 Sum_probs=66.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCC-CceeEEEecccCc
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPG-IVFDAVHCARCRV 464 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd-~sFDlV~~~~c~v 464 (595)
.++.+||+||||+|+.++-|++. .|+++++.+.-...|..++ ...|+..+....+.-...++. ..||.|+... .+
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L-~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vta-aa 148 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNL-ETLGYENVTVRHGDGSKGWPEEAPYDRIIVTA-AA 148 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHH-HHcCCCceEEEECCcccCCCCCCCcCEEEEee-cc
Confidence 46899999999999999999884 8999999876555555433 344664444444433333333 6799999874 33
Q ss_pred ccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 465 PWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 465 ~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
...+ ..+.+-|||||++++-.
T Consensus 149 ~~vP------~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 149 PEVP------EALLDQLKPGGRLVIPV 169 (209)
T ss_pred CCCC------HHHHHhcccCCEEEEEE
Confidence 3221 24567899999999864
No 149
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.47 E-value=2.7e-06 Score=90.24 Aligned_cols=98 Identities=16% Similarity=0.189 Sum_probs=66.6
Q ss_pred CchHHHHHHHHHhcccc----cCCCCCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCC--e
Q 007641 368 NGALHYIDFIQESVPDV----AWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP--A 437 (595)
Q Consensus 368 ~ga~~yid~L~~~L~~l----~~~~~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~--~ 437 (595)
.++..|+..|..+|... .......+|||||||+|.+...|+.+ .++|+||++..+..|+...+...++. +
T Consensus 89 P~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 89 PGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred CcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 56788998888886431 11224679999999999888777763 79999999999988887766552333 2
Q ss_pred eEeec-CCCCC----CCCCCceeEEEecccCcc
Q 007641 438 ISAVM-GTERL----PFPGIVFDAVHCARCRVP 465 (595)
Q Consensus 438 ~~~v~-d~~~L----Pfpd~sFDlV~~~~c~v~ 465 (595)
.+... +...+ ..+...||+|+|+.+++.
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~ 201 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCNPPFHA 201 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeCCCCcC
Confidence 22221 21111 124678999999985543
No 150
>PRK03612 spermidine synthase; Provisional
Probab=98.46 E-value=2.5e-06 Score=96.04 Aligned_cols=125 Identities=17% Similarity=0.135 Sum_probs=83.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHH--HHH-Hc----CCCeeEeecCCCC-CCCCCCceeE
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQ--FAL-ER----GIPAISAVMGTER-LPFPGIVFDA 456 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq--~A~-er----gi~~~~~v~d~~~-LPfpd~sFDl 456 (595)
+.++|||||||+|..+..++++ .|+++|+++.++..++.. +.. .. ...+.+...|... +....++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 4689999999999999988874 689999998877666542 111 00 1223445555433 2333468999
Q ss_pred EEecccCcccc-----cCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCE
Q 007641 457 VHCARCRVPWH-----IEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWE 518 (595)
Q Consensus 457 V~~~~c~v~~h-----~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~ 518 (595)
|++.. ..++. .....+++.+.++|||||.|++...+.+.. ...+..+.+.+++.||.
T Consensus 377 Ii~D~-~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~----~~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 377 IIVDL-PDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA----PKAFWSIEATLEAAGLA 438 (521)
T ss_pred EEEeC-CCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccc----hHHHHHHHHHHHHcCCE
Confidence 99974 22221 122578999999999999999875432221 23456778888899993
No 151
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.46 E-value=2.2e-06 Score=94.03 Aligned_cols=121 Identities=19% Similarity=0.239 Sum_probs=80.0
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCC----CCCCCCceeEEEecc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTER----LPFPGIVFDAVHCAR 461 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~----LPfpd~sFDlV~~~~ 461 (595)
++.+|||+|||+|.++..|+.. .|+++|+++.++..++.+.. ..++. +.+...+... +++.+.+||+|++..
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~-~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAE-LNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHH-HhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence 4679999999999999999884 79999999998887775443 34454 4455555432 234456799999876
Q ss_pred cCcccccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEEe
Q 007641 462 CRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSIS 523 (595)
Q Consensus 462 c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~~ 523 (595)
+... -...++..+.+ |+|++.++++..| ..+..-..++...||.+....
T Consensus 371 Pr~G---~~~~~l~~l~~-l~~~~ivyvsc~p---------~tlard~~~l~~~gy~~~~~~ 419 (431)
T TIGR00479 371 PRKG---CAAEVLRTIIE-LKPERIVYVSCNP---------ATLARDLEFLCKEGYGITWVQ 419 (431)
T ss_pred CCCC---CCHHHHHHHHh-cCCCEEEEEcCCH---------HHHHHHHHHHHHCCeeEEEEE
Confidence 3221 12455665554 8999988887432 223222334556788765543
No 152
>PLN02672 methionine S-methyltransferase
Probab=98.45 E-value=1.6e-06 Score=103.91 Aligned_cols=126 Identities=14% Similarity=0.184 Sum_probs=87.4
Q ss_pred CCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHc---------------CC-CeeEeecCCCCCCC
Q 007641 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER---------------GI-PAISAVMGTERLPF 449 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~er---------------gi-~~~~~v~d~~~LPf 449 (595)
+.+|||||||+|.++..|+.+ .|+++|+++.++..+..+..+.. .. .+.+...|.... +
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~-~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY-C 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh-c
Confidence 468999999999999999874 69999999999888876655421 11 244455554322 2
Q ss_pred CC--CceeEEEecccCcccc--------------------------c-------CH----HHHHHHHHHhccCCcEEEEE
Q 007641 450 PG--IVFDAVHCARCRVPWH--------------------------I-------EG----GKLLLELNRVLRPGGFFIWS 490 (595)
Q Consensus 450 pd--~sFDlV~~~~c~v~~h--------------------------~-------d~----~~lL~El~RvLKPGG~Lvis 490 (595)
.. ..||+|+++.+++... + +. ..++.++.++|+|||++++-
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 22 3699999998765321 0 00 36778888999999999986
Q ss_pred eCCCCCcCchhHHHHHHHH-HHHHHcCCEEEEEeec
Q 007641 491 ATPVYQKLPEDVEIWNAMS-QLIKAMCWELVSISKD 525 (595)
Q Consensus 491 ~pp~~~~l~e~i~~w~~le-~Lak~~Gw~~v~~~~~ 525 (595)
.-. ..-..+. +++...||..+.....
T Consensus 278 iG~---------~q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 278 MGG---------RPGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred ECc---------cHHHHHHHHHHHHCCCCeeEEeee
Confidence 431 2235677 6889999987655443
No 153
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.45 E-value=4.2e-06 Score=85.77 Aligned_cols=120 Identities=19% Similarity=0.212 Sum_probs=85.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCC--eeEeecCCCCCCCC---CCceeEE
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFP---GIVFDAV 457 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~--~~~~v~d~~~LPfp---d~sFDlV 457 (595)
.++.+||+.|.|+|.++.+|++. .|+.+|+.......|+.++.. .|+. +.+...|...-.|. +..||+|
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~-~gl~~~v~~~~~Dv~~~g~~~~~~~~~Dav 117 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFER-HGLDDNVTVHHRDVCEEGFDEELESDFDAV 117 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-TTCCTTEEEEES-GGCG--STT-TTSEEEE
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHH-cCCCCCceeEecceecccccccccCcccEE
Confidence 47999999999999999999983 799999998877777766554 4553 44555665444442 3679999
Q ss_pred EecccCcccccCHHHHHHHHHHhc-cCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEE
Q 007641 458 HCARCRVPWHIEGGKLLLELNRVL-RPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSI 522 (595)
Q Consensus 458 ~~~~c~v~~h~d~~~lL~El~RvL-KPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~ 522 (595)
+.-. ++|..+|..+.++| ||||+|++..|. ++.-..+...++..||..+..
T Consensus 118 fLDl------p~Pw~~i~~~~~~L~~~gG~i~~fsP~--------ieQv~~~~~~L~~~gf~~i~~ 169 (247)
T PF08704_consen 118 FLDL------PDPWEAIPHAKRALKKPGGRICCFSPC--------IEQVQKTVEALREHGFTDIET 169 (247)
T ss_dssp EEES------SSGGGGHHHHHHHE-EEEEEEEEEESS--------HHHHHHHHHHHHHTTEEEEEE
T ss_pred EEeC------CCHHHHHHHHHHHHhcCCceEEEECCC--------HHHHHHHHHHHHHCCCeeeEE
Confidence 8753 26678999999999 999999988764 444456666778889987754
No 154
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.43 E-value=2.2e-06 Score=91.11 Aligned_cols=137 Identities=17% Similarity=0.132 Sum_probs=94.2
Q ss_pred HHHhcccccCCCCCCEEEEECCCCchhHHHHhh--CCcEEEeCCchhHHHHHHHHHHHcCCCee-EeecCCCCCCCCCCc
Q 007641 377 IQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD--RGVLTMSFAPKDEHEAQVQFALERGIPAI-SAVMGTERLPFPGIV 453 (595)
Q Consensus 377 L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~--r~V~giDisp~di~~aqvq~A~ergi~~~-~~v~d~~~LPfpd~s 453 (595)
+++.+-.++..+++..|||-=||||.++....- ..++|.||+..|+..+..++-.-+--+.. ...+|+..+||++++
T Consensus 185 lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~ 264 (347)
T COG1041 185 LARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNS 264 (347)
T ss_pred HHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCc
Confidence 333333344456788999999999998865544 58899999988777766555433222332 334489999999999
Q ss_pred eeEEEecccCcccc---cC-----HHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEEeec
Q 007641 454 FDAVHCARCRVPWH---IE-----GGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKD 525 (595)
Q Consensus 454 FDlV~~~~c~v~~h---~d-----~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~~~~ 525 (595)
||.|++-.++=... .. -..+|..+.++|++||++++..|. .....+...+|.++.....
T Consensus 265 vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~-------------~~~~~~~~~~f~v~~~~~~ 331 (347)
T COG1041 265 VDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR-------------DPRHELEELGFKVLGRFTM 331 (347)
T ss_pred cceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC-------------cchhhHhhcCceEEEEEEE
Confidence 99999976321111 11 157899999999999999998761 1223456679998877555
Q ss_pred c
Q 007641 526 T 526 (595)
Q Consensus 526 ~ 526 (595)
.
T Consensus 332 ~ 332 (347)
T COG1041 332 R 332 (347)
T ss_pred e
Confidence 4
No 155
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.39 E-value=2.8e-06 Score=85.67 Aligned_cols=93 Identities=22% Similarity=0.179 Sum_probs=65.5
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v 464 (595)
+.++|||||+|.|.++..++++ .++.+|+ |.. +..+.+ ...+.+...+.. -++|. +|+|++.+ +
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v-----~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~--v 167 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEV-----IEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRH--V 167 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHH-----HCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEES--S
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhh-----hhcccc-ccccccccccHH-hhhcc--ccceeeeh--h
Confidence 4679999999999999999885 6788888 332 233333 333445555555 66775 99999987 4
Q ss_pred ccccC---HHHHHHHHHHhccCC--cEEEEEeCC
Q 007641 465 PWHIE---GGKLLLELNRVLRPG--GFFIWSATP 493 (595)
Q Consensus 465 ~~h~d---~~~lL~El~RvLKPG--G~Lvis~pp 493 (595)
+|+.. ...+|+.+++.|+|| |+|+|..+.
T Consensus 168 Lh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 168 LHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp GGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 44432 268999999999999 999998654
No 156
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.36 E-value=2.3e-06 Score=88.59 Aligned_cols=148 Identities=20% Similarity=0.214 Sum_probs=97.8
Q ss_pred HHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcC----------------
Q 007641 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERG---------------- 434 (595)
Q Consensus 373 yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~erg---------------- 434 (595)
.++.|.+.++.........+||=-|||.|.++..++.+ .+.|.++|..|+-.. ++.....
T Consensus 40 I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s--~fiLn~~~~~~~~~I~Pf~~~~s 117 (270)
T PF07942_consen 40 ILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLAS--NFILNHCSQPNQFTIYPFVHSFS 117 (270)
T ss_pred HHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHH--HHHHcccCCCCcEEEecceeccc
Confidence 45556666553222344678999999999999999997 678899988775332 2332210
Q ss_pred -------------CC------------eeEee-cCCCCCCCCC---CceeEEEecccCcccc-cCHHHHHHHHHHhccCC
Q 007641 435 -------------IP------------AISAV-MGTERLPFPG---IVFDAVHCARCRVPWH-IEGGKLLLELNRVLRPG 484 (595)
Q Consensus 435 -------------i~------------~~~~v-~d~~~LPfpd---~sFDlV~~~~c~v~~h-~d~~~lL~El~RvLKPG 484 (595)
+| .+... ++...+..++ ++||+|++.+ +.-. .+.-.+|..|.++||||
T Consensus 118 n~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F--FIDTA~Ni~~Yi~tI~~lLkpg 195 (270)
T PF07942_consen 118 NQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF--FIDTAENIIEYIETIEHLLKPG 195 (270)
T ss_pred CCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE--EeechHHHHHHHHHHHHHhccC
Confidence 00 00011 1111222223 6899999853 3322 25679999999999999
Q ss_pred cEEEEEeCCCCCcCch------hHH-HHHHHHHHHHHcCCEEEEEee
Q 007641 485 GFFIWSATPVYQKLPE------DVE-IWNAMSQLIKAMCWELVSISK 524 (595)
Q Consensus 485 G~Lvis~pp~~~~l~e------~i~-~w~~le~Lak~~Gw~~v~~~~ 524 (595)
|+||=.+|-.|..-+. .++ .|.+|..++..+||+++....
T Consensus 196 G~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 196 GYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 9888777777765443 133 489999999999999887654
No 157
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.36 E-value=1.6e-06 Score=94.50 Aligned_cols=102 Identities=15% Similarity=0.087 Sum_probs=71.6
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCC---CeeEeecCCCCC----CCCCCceeEEE
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI---PAISAVMGTERL----PFPGIVFDAVH 458 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi---~~~~~v~d~~~L----Pfpd~sFDlV~ 458 (595)
++.+|||+|||+|.++..++.. .|+++|+++.++..++.+++. .++ .+.+...|+..+ .....+||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~-Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVEL-NKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 3689999999999998876553 799999999998887755544 344 245555665332 11345799999
Q ss_pred ecccCccccc--------CHHHHHHHHHHhccCCcEEEEEe
Q 007641 459 CARCRVPWHI--------EGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 459 ~~~c~v~~h~--------d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
+..+++.-.. .-..++..+.++|+|||+|++..
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 9875433221 11355567889999999999864
No 158
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.36 E-value=1.2e-06 Score=88.03 Aligned_cols=152 Identities=18% Similarity=0.173 Sum_probs=97.4
Q ss_pred HHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHH-HHHHcC-CCeeEeecCCC
Q 007641 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQ-FALERG-IPAISAVMGTE 445 (595)
Q Consensus 371 ~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq-~A~erg-i~~~~~v~d~~ 445 (595)
..|.+.+.+.-. ...+.+.+|||...|-|.++...+.+ .|++++.+|.-+..|.++ ..++.. ..+.++..|+.
T Consensus 118 dP~~Dt~~Kv~~--V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~ 195 (287)
T COG2521 118 DPLEDTLAKVEL--VKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAY 195 (287)
T ss_pred CcHHHHHhhhhe--eccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHH
Confidence 345555544422 11235889999999999999988885 788999888766554432 111111 11233444443
Q ss_pred CC--CCCCCceeEEEecccCccccc--CHHHHHHHHHHhccCCcEEEEE-eCCCCCcCchhHHHHHHHHHHHHHcCCEEE
Q 007641 446 RL--PFPGIVFDAVHCARCRVPWHI--EGGKLLLELNRVLRPGGFFIWS-ATPVYQKLPEDVEIWNAMSQLIKAMCWELV 520 (595)
Q Consensus 446 ~L--Pfpd~sFDlV~~~~c~v~~h~--d~~~lL~El~RvLKPGG~Lvis-~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v 520 (595)
.+ .|+|.+||+|+-..+.+...- ....+.+|++|+|||||.++=- ..|--.+-. ......+.+.+++.||.++
T Consensus 196 e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG--~d~~~gVa~RLr~vGF~~v 273 (287)
T COG2521 196 EVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRG--LDLPKGVAERLRRVGFEVV 273 (287)
T ss_pred HHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccccc--CChhHHHHHHHHhcCceee
Confidence 32 478999999998765544332 3479999999999999999843 333211111 1224677788999999988
Q ss_pred EEeecc
Q 007641 521 SISKDT 526 (595)
Q Consensus 521 ~~~~~~ 526 (595)
......
T Consensus 274 ~~~~~~ 279 (287)
T COG2521 274 KKVREA 279 (287)
T ss_pred eeehhc
Confidence 776553
No 159
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.35 E-value=9.2e-06 Score=83.56 Aligned_cols=120 Identities=17% Similarity=0.226 Sum_probs=80.9
Q ss_pred HHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCC----eeEeec
Q 007641 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP----AISAVM 442 (595)
Q Consensus 371 ~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~----~~~~v~ 442 (595)
..+.+.+.+.+....+.. ...|||+|||+|.++..|+.. .|+++|.++..+..+..+ |...++. ++...+
T Consensus 131 EE~V~~Vid~~~~~~~~~-~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN-~qr~~l~g~i~v~~~~m 208 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSK-HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKEN-AQRLKLSGRIEVIHNIM 208 (328)
T ss_pred HHHHHHHHHHHhhhhhcc-cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHH-HHHHhhcCceEEEeccc
Confidence 456777777766555443 458999999999999888763 799999998877666533 3333222 222212
Q ss_pred C---CCCCCCCCCceeEEEecccCcccccCHH-------------------------HHHHHHHHhccCCcEEEEEeC
Q 007641 443 G---TERLPFPGIVFDAVHCARCRVPWHIEGG-------------------------KLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 443 d---~~~LPfpd~sFDlV~~~~c~v~~h~d~~-------------------------~lL~El~RvLKPGG~Lvis~p 492 (595)
. ....+.+.+.+|+++|+..++...-..+ .++.-+.|.|+|||.+++..-
T Consensus 209 e~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 209 ESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 2 2344566789999999987665321110 456667899999999998753
No 160
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.34 E-value=3.4e-06 Score=94.71 Aligned_cols=103 Identities=15% Similarity=0.170 Sum_probs=77.3
Q ss_pred CCCCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecC-CCC--CCCCCCceeEEEe
Q 007641 387 GKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMG-TER--LPFPGIVFDAVHC 459 (595)
Q Consensus 387 ~~~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d-~~~--LPfpd~sFDlV~~ 459 (595)
+.....+||||||.|.|+..+|.. .++|+++...-+..+. +.+...++.++..... +.. --|+++++|.|+.
T Consensus 345 ~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~-~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i 423 (506)
T PRK01544 345 NEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVL-KLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYI 423 (506)
T ss_pred CCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHH-HHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEE
Confidence 345789999999999999999985 8999999987665554 3445667765544433 221 2378899999999
Q ss_pred cccCcccccCH--------HHHHHHHHHhccCCcEEEEEe
Q 007641 460 ARCRVPWHIEG--------GKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 460 ~~c~v~~h~d~--------~~lL~El~RvLKPGG~Lvis~ 491 (595)
.++ -+|.... ..+|..+.++|||||.|.+.+
T Consensus 424 ~FP-DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 424 LFP-DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred ECC-CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 863 5774311 589999999999999999874
No 161
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.32 E-value=2.6e-06 Score=86.17 Aligned_cols=101 Identities=19% Similarity=0.388 Sum_probs=65.7
Q ss_pred CCEEEEECCCCchhHHHHhh----CCcEEEeCCchhHHHHHHHHHH----HcCCC-------------------------
Q 007641 390 TRVVLDVGCGVASFGGFLFD----RGVLTMSFAPKDEHEAQVQFAL----ERGIP------------------------- 436 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~----r~V~giDisp~di~~aqvq~A~----ergi~------------------------- 436 (595)
...+|||||-.|.++..++. +.|+|+||++.-+..|....-. +..+.
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t 138 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFT 138 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccccc
Confidence 56899999999999988887 4899999999887776533210 00000
Q ss_pred -----ee-E----eecC-CCCCCCCCCceeEEEeccc----CcccccC-HHHHHHHHHHhccCCcEEEEE
Q 007641 437 -----AI-S----AVMG-TERLPFPGIVFDAVHCARC----RVPWHIE-GGKLLLELNRVLRPGGFFIWS 490 (595)
Q Consensus 437 -----~~-~----~v~d-~~~LPfpd~sFDlV~~~~c----~v~~h~d-~~~lL~El~RvLKPGG~Lvis 490 (595)
.+ + .++. ..-|.+....||+|+|.-. .+-|+-+ ...+|+.++++|.|||+||+-
T Consensus 139 ~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 139 TDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 00 0 0000 1112234457999998631 1223322 269999999999999999986
No 162
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.29 E-value=6.6e-06 Score=70.26 Aligned_cols=98 Identities=31% Similarity=0.395 Sum_probs=65.4
Q ss_pred EEEECCCCchhH--HHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCC--CCCCC-CceeEEEecccCc
Q 007641 393 VLDVGCGVASFG--GFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTER--LPFPG-IVFDAVHCARCRV 464 (595)
Q Consensus 393 VLDIGCGtG~~a--~~La~r--~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~--LPfpd-~sFDlV~~~~c~v 464 (595)
|||+|||+|... ..+... .++++|+++.++..+...... .... +.+...+... +++.. ..||++ +..+..
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999843 333332 578889988766553222222 2222 3445555443 78877 489999 654333
Q ss_pred ccccCHHHHHHHHHHhccCCcEEEEEeCC
Q 007641 465 PWHIEGGKLLLELNRVLRPGGFFIWSATP 493 (595)
Q Consensus 465 ~~h~d~~~lL~El~RvLKPGG~Lvis~pp 493 (595)
++.....++.++.++|+|+|.+++....
T Consensus 130 -~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 130 -HLLPPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred -hcCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 2333789999999999999999988653
No 163
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.27 E-value=3.7e-06 Score=88.73 Aligned_cols=120 Identities=18% Similarity=0.209 Sum_probs=78.5
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCCCCC-CCCceeEEEecccCc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPF-PGIVFDAVHCARCRV 464 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~LPf-pd~sFDlV~~~~c~v 464 (595)
++.+|||+|||+|.++..|+.+ .|+|+|+++.++..++.+ +...++. +.+...++..+.. ..+.||+|++....
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n-~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr- 250 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQS-AAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPR- 250 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHH-HHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCC-
Confidence 3579999999999999999985 799999999988877644 4445554 5566666544432 34579999998632
Q ss_pred ccccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEEee
Q 007641 465 PWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISK 524 (595)
Q Consensus 465 ~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~~~ 524 (595)
. .....+.++..-++|++.++++..|.- +. +++..+ .||++.....
T Consensus 251 --~-G~~~~~~~~l~~~~~~~ivyvsc~p~t--~~------rd~~~l---~~y~~~~~~~ 296 (315)
T PRK03522 251 --R-GIGKELCDYLSQMAPRFILYSSCNAQT--MA------KDLAHL---PGYRIERVQL 296 (315)
T ss_pred --C-CccHHHHHHHHHcCCCeEEEEECCccc--ch------hHHhhc---cCcEEEEEEE
Confidence 1 112233344445789988888754311 11 233333 4888766543
No 164
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.27 E-value=2.9e-06 Score=88.72 Aligned_cols=102 Identities=13% Similarity=0.143 Sum_probs=66.7
Q ss_pred CCEEEEECCCCch----hHHHHhh--------CCcEEEeCCchhHHHHHHHH-H--HHcCC-------------------
Q 007641 390 TRVVLDVGCGVAS----FGGFLFD--------RGVLTMSFAPKDEHEAQVQF-A--LERGI------------------- 435 (595)
Q Consensus 390 ~~rVLDIGCGtG~----~a~~La~--------r~V~giDisp~di~~aqvq~-A--~ergi------------------- 435 (595)
.-+|+-.||++|- ++..|.+ -.|+|+||+...+..|+.-. . .-+++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4699999999993 4444444 15999999988877665321 0 00011
Q ss_pred ---------CeeEeecCCCCCCCC-CCceeEEEecccCccccc-CHHHHHHHHHHhccCCcEEEEEe
Q 007641 436 ---------PAISAVMGTERLPFP-GIVFDAVHCARCRVPWHI-EGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 436 ---------~~~~~v~d~~~LPfp-d~sFDlV~~~~c~v~~h~-d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
.+.+...+....+++ .+.||+|+|..++++... ....++..+++.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 023334444443443 578999999874333322 24799999999999999998874
No 165
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.25 E-value=1.7e-06 Score=85.66 Aligned_cols=104 Identities=21% Similarity=0.360 Sum_probs=59.6
Q ss_pred CCCEEEEECCCCc----hhHHHHhh------C---CcEEEeCCchhHHHHHHHH---HHHcCC-----------------
Q 007641 389 RTRVVLDVGCGVA----SFGGFLFD------R---GVLTMSFAPKDEHEAQVQF---ALERGI----------------- 435 (595)
Q Consensus 389 ~~~rVLDIGCGtG----~~a~~La~------r---~V~giDisp~di~~aqvq~---A~ergi----------------- 435 (595)
+.-+|+-+||++| +++..|.+ . .|+|.||++..+..|..-. ..-+++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4678999999999 35555544 1 6899999988776664210 000011
Q ss_pred --------CeeEeecCCCCCCCCCCceeEEEecccCcccccC-HHHHHHHHHHhccCCcEEEEEeC
Q 007641 436 --------PAISAVMGTERLPFPGIVFDAVHCARCRVPWHIE-GGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 436 --------~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h~d-~~~lL~El~RvLKPGG~Lvis~p 492 (595)
.+.+...+....+.+.+.||+|+|...++.+... ...++..+++.|+|||+|++...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 1334445544433445789999999844443332 27999999999999999999743
No 166
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.21 E-value=7.6e-06 Score=82.37 Aligned_cols=111 Identities=14% Similarity=0.127 Sum_probs=78.7
Q ss_pred chHHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCCee-Eee-
Q 007641 369 GALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAI-SAV- 441 (595)
Q Consensus 369 ga~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~~~-~~v- 441 (595)
....++..|.+.. +.++||+||.+.|..+.+|+.. .++++|+++.....|+..+++..-.+.+ ...
T Consensus 46 e~g~~L~~L~~~~-------~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~ 118 (219)
T COG4122 46 ETGALLRLLARLS-------GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG 118 (219)
T ss_pred hHHHHHHHHHHhc-------CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec
Confidence 3344555555443 4789999999999999999884 5999999999888887666543333323 333
Q ss_pred cCC-CCCC-CCCCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEE
Q 007641 442 MGT-ERLP-FPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (595)
Q Consensus 442 ~d~-~~LP-fpd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis 490 (595)
.+. ..+- +..++||+|+.-. .-.+-..+|..+.++|||||.+++.
T Consensus 119 gdal~~l~~~~~~~fDliFIDa----dK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 119 GDALDVLSRLLDGSFDLVFIDA----DKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred CcHHHHHHhccCCCccEEEEeC----ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 232 2222 4568999999853 2234479999999999999999976
No 167
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.21 E-value=1.4e-05 Score=86.46 Aligned_cols=119 Identities=15% Similarity=0.129 Sum_probs=79.0
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCC-CeeEeecCCCCC-CCCCCceeEEEecccCc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI-PAISAVMGTERL-PFPGIVFDAVHCARCRV 464 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi-~~~~~v~d~~~L-Pfpd~sFDlV~~~~c~v 464 (595)
++.+|||+|||+|.++..|+.+ .|+++|+++..+..++.+. ...++ .+.+...+...+ +.....||+|++..++-
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~-~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSA-QMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHH-HHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 3579999999999999999875 7999999999887776443 34455 345555555332 21124599999987432
Q ss_pred ccccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHH-HHHHHHHHHcCCEEEEEee
Q 007641 465 PWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIW-NAMSQLIKAMCWELVSISK 524 (595)
Q Consensus 465 ~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w-~~le~Lak~~Gw~~v~~~~ 524 (595)
. -...++..+. .|+|++.++++..| ..+ +++..| .||.+.....
T Consensus 312 G---~~~~~l~~l~-~~~p~~ivyvsc~p---------~TlaRDl~~L---~gy~l~~~~~ 356 (374)
T TIGR02085 312 G---IGKELCDYLS-QMAPKFILYSSCNA---------QTMAKDIAEL---SGYQIERVQL 356 (374)
T ss_pred C---CcHHHHHHHH-hcCCCeEEEEEeCH---------HHHHHHHHHh---cCceEEEEEE
Confidence 1 1234555554 47999999998543 222 444444 5888766543
No 168
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.17 E-value=3.2e-05 Score=77.46 Aligned_cols=144 Identities=14% Similarity=0.186 Sum_probs=91.0
Q ss_pred HHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhh-CCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCC--
Q 007641 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD-RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF-- 449 (595)
Q Consensus 373 yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~-r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPf-- 449 (595)
.+.+|.............-++|||||=.......... ..|+.||+.+.. . -+...|....|+
T Consensus 35 lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~fdvt~IDLns~~-----------~----~I~qqDFm~rplp~ 99 (219)
T PF11968_consen 35 LVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGWFDVTRIDLNSQH-----------P----GILQQDFMERPLPK 99 (219)
T ss_pred HHHHhhhhccccccccccceEEeecccCCCCcccccCceeeEEeecCCCC-----------C----CceeeccccCCCCC
Confidence 4455555443322222346999999875543322222 269999998631 1 124445545554
Q ss_pred -CCCceeEEEecccCcccc-c---CHHHHHHHHHHhccCCcE-----EEEEeCCC----CCcCchhHHHHHHHHHHHHHc
Q 007641 450 -PGIVFDAVHCARCRVPWH-I---EGGKLLLELNRVLRPGGF-----FIWSATPV----YQKLPEDVEIWNAMSQLIKAM 515 (595)
Q Consensus 450 -pd~sFDlV~~~~c~v~~h-~---d~~~lL~El~RvLKPGG~-----Lvis~pp~----~~~l~e~i~~w~~le~Lak~~ 515 (595)
+.+.||+|+|+. |+.. + ..+.+++.+++.|+|+|. |+|..|.. -+++. ...+..++..+
T Consensus 100 ~~~e~FdvIs~SL--VLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~-----~~~l~~im~~L 172 (219)
T PF11968_consen 100 NESEKFDVISLSL--VLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMT-----EERLREIMESL 172 (219)
T ss_pred CcccceeEEEEEE--EEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccC-----HHHHHHHHHhC
Confidence 357899999986 3333 2 347999999999999999 88886631 11111 25777889999
Q ss_pred CCEEEEEeecccCceEEEEEEeCCC
Q 007641 516 CWELVSISKDTINKVGIAVYRKPTS 540 (595)
Q Consensus 516 Gw~~v~~~~~~l~~~giaI~~KP~~ 540 (595)
||..+..+.. ......+|++...
T Consensus 173 Gf~~~~~~~~--~Kl~y~l~r~~~~ 195 (219)
T PF11968_consen 173 GFTRVKYKKS--KKLAYWLFRKSGK 195 (219)
T ss_pred CcEEEEEEec--CeEEEEEEeecCC
Confidence 9999887654 4556677776543
No 169
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.15 E-value=4.7e-05 Score=79.24 Aligned_cols=138 Identities=20% Similarity=0.306 Sum_probs=93.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhC------CcEEEeCCchhHHHHHHHHHHHcCCCe--eEeecCCCC---CCCCCCceeE
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR------GVLTMSFAPKDEHEAQVQFALERGIPA--ISAVMGTER---LPFPGIVFDA 456 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r------~V~giDisp~di~~aqvq~A~ergi~~--~~~v~d~~~---LPfpd~sFDl 456 (595)
...-+||||.||.|....-.+.. .|...|+++..+...+ +.+.++|+.. .+...++.+ +.--.-..++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~-~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR-ALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH-HHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 35678999999999876555442 6888899988877665 5566777764 344455422 2211234688
Q ss_pred EEecccCcccccCH---HHHHHHHHHhccCCcEEEEEeCCCCCcCch---------hHHHH-------HHHHHHHHHcCC
Q 007641 457 VHCARCRVPWHIEG---GKLLLELNRVLRPGGFFIWSATPVYQKLPE---------DVEIW-------NAMSQLIKAMCW 517 (595)
Q Consensus 457 V~~~~c~v~~h~d~---~~lL~El~RvLKPGG~Lvis~pp~~~~l~e---------~i~~w-------~~le~Lak~~Gw 517 (595)
++.+. ++-...+. ...|..+.++|.|||+||.+..|.+..+.- .-..| .+|.+|+..+||
T Consensus 213 ~iVsG-L~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF 291 (311)
T PF12147_consen 213 AIVSG-LYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGF 291 (311)
T ss_pred EEEec-chhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCC
Confidence 88875 22223332 467888999999999999998775443211 11234 789999999999
Q ss_pred EEEEEeeccc
Q 007641 518 ELVSISKDTI 527 (595)
Q Consensus 518 ~~v~~~~~~l 527 (595)
..+....+..
T Consensus 292 ~K~~q~ID~~ 301 (311)
T PF12147_consen 292 EKIDQRIDEW 301 (311)
T ss_pred chhhheeccC
Confidence 9888776653
No 170
>PLN02476 O-methyltransferase
Probab=98.15 E-value=8.2e-06 Score=84.93 Aligned_cols=98 Identities=12% Similarity=0.048 Sum_probs=70.8
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCC--eeEeecCC-CCCC-C----CCCcee
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGT-ERLP-F----PGIVFD 455 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~--~~~~v~d~-~~LP-f----pd~sFD 455 (595)
+.++|||||+|+|..+.+|+.. .|+++|+++.....|+..+. +.|+. +.+...++ .-|+ + ..++||
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~-~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYE-LAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 3679999999999999999873 58999999987777765554 34553 44444443 2232 1 136899
Q ss_pred EEEecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 456 AVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 456 lV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
+|+.-. ....-..++..+.++|+|||.+++..
T Consensus 197 ~VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 197 FAFVDA----DKRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EEEECC----CHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 999864 22234788999999999999998763
No 171
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.10 E-value=1e-05 Score=80.68 Aligned_cols=98 Identities=20% Similarity=0.185 Sum_probs=69.7
Q ss_pred CCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCC--eeEeecCCC-CCC-----CCCCceeE
Q 007641 390 TRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTE-RLP-----FPGIVFDA 456 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~--~~~~v~d~~-~LP-----fpd~sFDl 456 (595)
.++||+|||++|..+.+|+.. .|+++|+++.....|+..+ ...|+. +.+...++. -|+ .+.+.||+
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~-~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENF-RKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHH-HHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHH-HhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 679999999999999999973 7999999998776665433 444442 444445432 222 12358999
Q ss_pred EEecccCcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 457 VHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 457 V~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
|+.-. ...+-..++..+.++|+|||.+++...
T Consensus 125 VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 125 VFIDA----DKRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp EEEES----TGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred EEEcc----cccchhhHHHHHhhhccCCeEEEEccc
Confidence 99864 223446888899999999999998743
No 172
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.09 E-value=6.7e-06 Score=87.12 Aligned_cols=98 Identities=17% Similarity=0.263 Sum_probs=67.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeE--eecCCCCCCCCCCceeEEEeccc-
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAIS--AVMGTERLPFPGIVFDAVHCARC- 462 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~--~v~d~~~LPfpd~sFDlV~~~~c- 462 (595)
.+++|||||||+|.++...+++ .|++++.+... .-..+.++..+...++ .....+.+-+|-.+.|+|++-+.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia--~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA--DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH--HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 4789999999999988887774 89999998543 3334556666665433 23335555555678999998651
Q ss_pred CcccccC-HHHHHHHHHHhccCCcEEE
Q 007641 463 RVPWHIE-GGKLLLELNRVLRPGGFFI 488 (595)
Q Consensus 463 ~v~~h~d-~~~lL~El~RvLKPGG~Lv 488 (595)
+.+.+.. ...+|-.=.+.|+|||.++
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 1121212 2566667789999999887
No 173
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.06 E-value=1.5e-05 Score=77.20 Aligned_cols=103 Identities=17% Similarity=0.131 Sum_probs=60.4
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHc---CCCeeEeecCC-CCC---CCCCCceeEE
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER---GIPAISAVMGT-ERL---PFPGIVFDAV 457 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~er---gi~~~~~v~d~-~~L---Pfpd~sFDlV 457 (595)
++.+|||||||+|..+..++.. .|+..|+.+ .+...+.+..... ...+.+...+= ..+ .+....||+|
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 5789999999999888777765 799999987 4443333322211 12223333221 111 1234689999
Q ss_pred EecccCcccccCHHHHHHHHHHhccCCcEEEEEeCC
Q 007641 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATP 493 (595)
Q Consensus 458 ~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp 493 (595)
+++.|++ .......++.-+.++|+|+|.+++..+.
T Consensus 124 lasDv~Y-~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 124 LASDVLY-DEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp EEES--S--GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred EEecccc-hHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 9998543 2334588999999999999998877543
No 174
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.04 E-value=9.3e-06 Score=87.51 Aligned_cols=100 Identities=27% Similarity=0.337 Sum_probs=76.8
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCC--eeEeecCCCCCCCCCCceeEEEecccC
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARCR 463 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~--~~~~v~d~~~LPfpd~sFDlV~~~~c~ 463 (595)
++..+||+|||.|....+++.. +++|++.++..+..+...... .++. ..+...+....||+++.||.|.+.. .
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~-~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld-~ 187 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKK-AYLDNKCNFVVADFGKMPFEDNTFDGVRFLE-V 187 (364)
T ss_pred ccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHH-HHhhhhcceehhhhhcCCCCccccCcEEEEe-e
Confidence 4568999999999988888763 889999998766666543332 2222 2335556788899999999999987 2
Q ss_pred cccccCHHHHHHHHHHhccCCcEEEEE
Q 007641 464 VPWHIEGGKLLLELNRVLRPGGFFIWS 490 (595)
Q Consensus 464 v~~h~d~~~lL~El~RvLKPGG~Lvis 490 (595)
+.+..+...++.|++|+|+|||+++..
T Consensus 188 ~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 188 VCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cccCCcHHHHHHHHhcccCCCceEEeH
Confidence 344457899999999999999999964
No 175
>PLN02823 spermine synthase
Probab=98.02 E-value=0.00015 Score=77.48 Aligned_cols=103 Identities=16% Similarity=0.188 Sum_probs=69.6
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHc----CCCeeEeecCC-CCCCCCCCceeEEEe
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER----GIPAISAVMGT-ERLPFPGIVFDAVHC 459 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~er----gi~~~~~v~d~-~~LPfpd~sFDlV~~ 459 (595)
..++||.||+|.|..+.++++. .|+++||++..+..++..+.... ...+.+.+.|. .-+....+.||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4679999999999999988874 68999999887766654332211 12234455553 223334578999998
Q ss_pred cccCcc------cccCHHHHHH-HHHHhccCCcEEEEEeC
Q 007641 460 ARCRVP------WHIEGGKLLL-ELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 460 ~~c~v~------~h~d~~~lL~-El~RvLKPGG~Lvis~p 492 (595)
-. .-+ .++-...+++ .+.++|+|||+|++-..
T Consensus 183 D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 183 DL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred cC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 62 111 1223357887 89999999999987643
No 176
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.02 E-value=4e-05 Score=78.69 Aligned_cols=83 Identities=18% Similarity=0.153 Sum_probs=59.4
Q ss_pred HHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCC
Q 007641 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF 449 (595)
Q Consensus 372 ~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPf 449 (595)
.+++.|.+.+.. .++.+|||||||+|.++..|+++ .|+++|+++.++..+...++. ...+.+...|...+++
T Consensus 16 ~~~~~iv~~~~~----~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~ 89 (258)
T PRK14896 16 RVVDRIVEYAED----TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDL 89 (258)
T ss_pred HHHHHHHHhcCC----CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCc
Confidence 445556555542 35789999999999999999985 799999998877665533322 2235566677777777
Q ss_pred CCCceeEEEeccc
Q 007641 450 PGIVFDAVHCARC 462 (595)
Q Consensus 450 pd~sFDlV~~~~c 462 (595)
+ .||+|+++.+
T Consensus 90 ~--~~d~Vv~NlP 100 (258)
T PRK14896 90 P--EFNKVVSNLP 100 (258)
T ss_pred h--hceEEEEcCC
Confidence 5 4899999863
No 177
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.01 E-value=3.6e-05 Score=79.68 Aligned_cols=82 Identities=15% Similarity=0.098 Sum_probs=58.1
Q ss_pred HHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCC
Q 007641 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFP 450 (595)
Q Consensus 373 yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfp 450 (595)
.++.+.+.+.. .++.+|||||||+|.++..|+++ .|+++|+++.++..++..++ ...+.+...|...++++
T Consensus 30 i~~~i~~~l~~----~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~ 102 (272)
T PRK00274 30 ILDKIVDAAGP----QPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKVDLS 102 (272)
T ss_pred HHHHHHHhcCC----CCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcCCHH
Confidence 34455554432 35679999999999999999985 79999999887766653332 13456677777777766
Q ss_pred CCceeEEEecc
Q 007641 451 GIVFDAVHCAR 461 (595)
Q Consensus 451 d~sFDlV~~~~ 461 (595)
+-.+|.|+++.
T Consensus 103 ~~~~~~vv~Nl 113 (272)
T PRK00274 103 ELQPLKVVANL 113 (272)
T ss_pred HcCcceEEEeC
Confidence 43358888875
No 178
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.01 E-value=3.7e-05 Score=74.93 Aligned_cols=124 Identities=19% Similarity=0.222 Sum_probs=80.7
Q ss_pred CCCCEEEEECCCCchhHHHHhh--CC-----------cEEEeCCchhHHHHHHHHHHHcCCC--eeEeecCCCCCCCCCC
Q 007641 388 KRTRVVLDVGCGVASFGGFLFD--RG-----------VLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTERLPFPGI 452 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~--r~-----------V~giDisp~di~~aqvq~A~ergi~--~~~~v~d~~~LPfpd~ 452 (595)
.++..|||--||+|.+....+. .. ++|.|+++.++..+..+. ...++. +.+...+...+++.++
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~-~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENL-KAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHH-HHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHH-HhcccCCceEEEecchhhcccccC
Confidence 3578999999999998855544 23 569999999988777554 344443 4566677888998888
Q ss_pred ceeEEEecccCcccccC---H----HHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEEeec
Q 007641 453 VFDAVHCARCRVPWHIE---G----GKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKD 525 (595)
Q Consensus 453 sFDlV~~~~c~v~~h~d---~----~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~~~~ 525 (595)
+||+|+++.++=.-... . ..++.++.|+|+|..++++... ..+...+...+|........
T Consensus 106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~-------------~~~~~~~~~~~~~~~~~~~~ 172 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSN-------------RELEKALGLKGWRKRKLYNG 172 (179)
T ss_dssp BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESC-------------CCHHHHHTSTTSEEEEEEET
T ss_pred CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECC-------------HHHHHHhcchhhceEEEEEe
Confidence 99999998632111111 1 3678899999999555555432 24556667778887666544
No 179
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.00 E-value=3.5e-05 Score=79.91 Aligned_cols=132 Identities=19% Similarity=0.286 Sum_probs=79.4
Q ss_pred CCCccccCchHHHHHHHHHhcccccCCC--CCCEEEEECCCCc----hhHHHHhhC---------CcEEEeCCchhHHHH
Q 007641 361 GGGTQFKNGALHYIDFIQESVPDVAWGK--RTRVVLDVGCGVA----SFGGFLFDR---------GVLTMSFAPKDEHEA 425 (595)
Q Consensus 361 ggg~~F~~ga~~yid~L~~~L~~l~~~~--~~~rVLDIGCGtG----~~a~~La~r---------~V~giDisp~di~~a 425 (595)
-..+.|.+...++..+-...+|.+.... ..-+|+-+||++| +++..|.+. .|+|.||+...+..|
T Consensus 66 in~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A 145 (268)
T COG1352 66 INVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKA 145 (268)
T ss_pred hccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHH
Confidence 3345566666665444444444332211 3678999999999 344444432 689999998877666
Q ss_pred HHHH----HHHcCCC-------------------------eeEeecCCCCCCCCCCceeEEEecccCcccccC-HHHHHH
Q 007641 426 QVQF----ALERGIP-------------------------AISAVMGTERLPFPGIVFDAVHCARCRVPWHIE-GGKLLL 475 (595)
Q Consensus 426 qvq~----A~ergi~-------------------------~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h~d-~~~lL~ 475 (595)
..-. ...++++ +.+...+...-++..+.||+|+|...++..... ...++.
T Consensus 146 ~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~ 225 (268)
T COG1352 146 RAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILR 225 (268)
T ss_pred hcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHH
Confidence 4311 1112221 122222322222244679999998844444332 379999
Q ss_pred HHHHhccCCcEEEEEeC
Q 007641 476 ELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 476 El~RvLKPGG~Lvis~p 492 (595)
.++..|+|||+|++...
T Consensus 226 ~f~~~L~~gG~LflG~s 242 (268)
T COG1352 226 RFADSLKPGGLLFLGHS 242 (268)
T ss_pred HHHHHhCCCCEEEEccC
Confidence 99999999999999743
No 180
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=0.00014 Score=71.13 Aligned_cols=123 Identities=18% Similarity=0.216 Sum_probs=84.1
Q ss_pred CCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC-CCCCCCCCceeEEEecccC
Q 007641 390 TRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT-ERLPFPGIVFDAVHCARCR 463 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~-~~LPfpd~sFDlV~~~~c~ 463 (595)
...+||||||+|..+..|++. -..+.||+|.... +....|+..+..+..+..+. ..+ ..++.|+++.+..+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~-~Tl~TA~~n~~~~~~V~tdl~~~l--~~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALE-ATLETARCNRVHIDVVRTDLLSGL--RNESVDVLVFNPPY 120 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHH-HHHHHHHhcCCccceeehhHHhhh--ccCCccEEEECCCc
Confidence 568999999999999999885 3688999997653 34466666666555555553 222 22889999999877
Q ss_pred cccccCH--------------------HHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEEe
Q 007641 464 VPWHIEG--------------------GKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSIS 523 (595)
Q Consensus 464 v~~h~d~--------------------~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~~ 523 (595)
++-...+ ..+|..+-.+|.|.|.|++..-. ... -.++-.+++..||......
T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~--~N~------p~ei~k~l~~~g~~~~~~~ 192 (209)
T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR--ANK------PKEILKILEKKGYGVRIAM 192 (209)
T ss_pred CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh--hcC------HHHHHHHHhhcccceeEEE
Confidence 6533211 25677788889999999987421 001 1456667888888764443
No 181
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.99 E-value=0.00011 Score=76.86 Aligned_cols=118 Identities=16% Similarity=0.077 Sum_probs=77.0
Q ss_pred HHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHc---C-CCeeEeecCC
Q 007641 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER---G-IPAISAVMGT 444 (595)
Q Consensus 373 yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~er---g-i~~~~~v~d~ 444 (595)
....+..+++.+.++.+ ++||-||-|.|..++.++++ .++.++|++..+..+..-+..-. . ..+.+...|.
T Consensus 61 ~yhEml~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg 139 (282)
T COG0421 61 IYHEMLAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDG 139 (282)
T ss_pred HHHHHHHhchhhhCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccH
Confidence 44555566666666665 79999999999999999996 78999999765544432221111 1 1123344443
Q ss_pred -CCCCCCCCceeEEEecccCccccc----CHHHHHHHHHHhccCCcEEEEEeC
Q 007641 445 -ERLPFPGIVFDAVHCARCRVPWHI----EGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 445 -~~LPfpd~sFDlV~~~~c~v~~h~----d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
.-+.-...+||+|++.- .-+..+ -...+++.++|+|+|+|.++.-..
T Consensus 140 ~~~v~~~~~~fDvIi~D~-tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~ 191 (282)
T COG0421 140 VEFLRDCEEKFDVIIVDS-TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAG 191 (282)
T ss_pred HHHHHhCCCcCCEEEEcC-CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecC
Confidence 22222224899999853 212111 227999999999999999998743
No 182
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.95 E-value=3.8e-05 Score=85.06 Aligned_cols=97 Identities=21% Similarity=0.235 Sum_probs=62.8
Q ss_pred CCEEEEECCCCchhHHHHhhC--------CcEEEeCCchhHHHHHHHHHHHcC--CCeeEeecCCCCCCCCCCceeEEEe
Q 007641 390 TRVVLDVGCGVASFGGFLFDR--------GVLTMSFAPKDEHEAQVQFALERG--IPAISAVMGTERLPFPGIVFDAVHC 459 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r--------~V~giDisp~di~~aqvq~A~erg--i~~~~~v~d~~~LPfpd~sFDlV~~ 459 (595)
...|||||||+|.++...+++ .|++++-++..+...+.. ....+ -.+.++..+++.+..| ...|+||+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~-v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKR-VNANGWGDKVTVIHGDMREVELP-EKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHH-HHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHH-HHhcCCCCeEEEEeCcccCCCCC-CceeEEEE
Confidence 568999999999987655442 799999998765444322 23333 3456666777777665 48999998
Q ss_pred cc-cCcccccCHHHHHHHHHHhccCCcEEE
Q 007641 460 AR-CRVPWHIEGGKLLLELNRVLRPGGFFI 488 (595)
Q Consensus 460 ~~-c~v~~h~d~~~lL~El~RvLKPGG~Lv 488 (595)
=. +.+..+.-....|..+.|.|||||.+|
T Consensus 265 ElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 ELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 54 112222223577899999999999887
No 183
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.92 E-value=3.5e-05 Score=79.06 Aligned_cols=96 Identities=10% Similarity=-0.039 Sum_probs=67.7
Q ss_pred CCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCC-C-eeEeecCC-CCCCC------CCCcee
Q 007641 390 TRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGI-P-AISAVMGT-ERLPF------PGIVFD 455 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi-~-~~~~v~d~-~~LPf------pd~sFD 455 (595)
.++||+||+++|..+.+|+.. .|+++|+.+.....|+..+.+ .|+ . +.+...++ +-|+- ..++||
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~-ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQK-AGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH-CCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 679999999999999988873 699999998776666555543 343 2 33444443 22321 136899
Q ss_pred EEEecccCcccccCHHHHHHHHHHhccCCcEEEEE
Q 007641 456 AVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (595)
Q Consensus 456 lV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis 490 (595)
+|+.-. +...-..++..+.++|+|||+|++.
T Consensus 159 ~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 159 FIFVDA----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred EEEecC----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 999864 2323467888889999999998875
No 184
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.91 E-value=2e-05 Score=78.23 Aligned_cols=121 Identities=18% Similarity=0.269 Sum_probs=84.8
Q ss_pred ecCCCCccccCchHHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCC
Q 007641 358 TFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGI 435 (595)
Q Consensus 358 ~Fpggg~~F~~ga~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi 435 (595)
-|-|.|.||.-...++..+|.--- -.|+....++||+|+|.|.++..++.. .|.+.++|.. |+......+.
T Consensus 83 G~lgrGsMFifSe~QF~klL~i~~--p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~t-----Mr~rL~kk~y 155 (288)
T KOG3987|consen 83 GFLGRGSMFIFSEEQFRKLLVIGG--PAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWT-----MRDRLKKKNY 155 (288)
T ss_pred cccccCceEEecHHHHHHHHhcCC--CccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHH-----HHHHHhhcCC
Confidence 366777887766666666553222 346667789999999999999999885 6777777744 4444455555
Q ss_pred CeeEeecCCCCCCCCCCceeEEEecccCcccccCHHHHHHHHHHhccC-CcEEEEE
Q 007641 436 PAISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRP-GGFFIWS 490 (595)
Q Consensus 436 ~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKP-GG~Lvis 490 (595)
.+....... + .+-.||+|.|.. ++--+.++..+|..++.+|+| .|..|+.
T Consensus 156 nVl~~~ew~-~---t~~k~dli~clN-lLDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 156 NVLTEIEWL-Q---TDVKLDLILCLN-LLDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred ceeeehhhh-h---cCceeehHHHHH-HHHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 543332211 1 223599999975 344466889999999999999 8888876
No 185
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.91 E-value=7.5e-05 Score=78.46 Aligned_cols=94 Identities=21% Similarity=0.286 Sum_probs=63.1
Q ss_pred HHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHc-CCCeeEeecCCCCCC
Q 007641 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALER-GIPAISAVMGTERLP 448 (595)
Q Consensus 372 ~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~er-gi~~~~~v~d~~~LP 448 (595)
..++.|.+.+.. .++.+|||||||+|.++..|+.+ .|+++|+++.++..+...++... ...+.+...|...++
T Consensus 23 ~i~~~Iv~~~~~----~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 23 LVLDKIVEKAAI----KPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE 98 (294)
T ss_pred HHHHHHHHhcCC----CCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc
Confidence 345555555432 35789999999999999999885 79999999988877765544322 123556666665555
Q ss_pred CCCCceeEEEecccCcccccCHHHHH
Q 007641 449 FPGIVFDAVHCARCRVPWHIEGGKLL 474 (595)
Q Consensus 449 fpd~sFDlV~~~~c~v~~h~d~~~lL 474 (595)
++ .||+|+++. ++++....++
T Consensus 99 ~~--~~d~VvaNl---PY~Istpil~ 119 (294)
T PTZ00338 99 FP--YFDVCVANV---PYQISSPLVF 119 (294)
T ss_pred cc--ccCEEEecC---CcccCcHHHH
Confidence 53 689999874 4454433333
No 186
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.91 E-value=8e-05 Score=76.08 Aligned_cols=81 Identities=20% Similarity=0.192 Sum_probs=55.1
Q ss_pred HHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCC
Q 007641 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFP 450 (595)
Q Consensus 373 yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfp 450 (595)
..+.+.+.+.. .++.+|||||||+|.++..|+++ .|+++|+++.++..++..+.. ...+.+...|...++++
T Consensus 17 i~~~i~~~~~~----~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 17 VIQKIVEAANV----LEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP 90 (253)
T ss_pred HHHHHHHhcCC----CCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh
Confidence 34445554432 35789999999999999999985 799999998776555433211 22345666677777765
Q ss_pred CCcee---EEEecc
Q 007641 451 GIVFD---AVHCAR 461 (595)
Q Consensus 451 d~sFD---lV~~~~ 461 (595)
.|| +|+++.
T Consensus 91 --~~d~~~~vvsNl 102 (253)
T TIGR00755 91 --DFPKQLKVVSNL 102 (253)
T ss_pred --HcCCcceEEEcC
Confidence 466 777653
No 187
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.87 E-value=0.00018 Score=70.77 Aligned_cols=101 Identities=16% Similarity=0.028 Sum_probs=65.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCC--eeEeecCCCC-CC-C--CCCceeEEEe
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTER-LP-F--PGIVFDAVHC 459 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~--~~~~v~d~~~-LP-f--pd~sFDlV~~ 459 (595)
.+.+|||++||+|.++..++.+ .|+++|+++..+..++.+... .++. +.+...+... +. + ....||+|+.
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~-~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLAL-LKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-hCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 3679999999999999999986 699999998877666544433 3332 3455555422 22 1 1224788888
Q ss_pred cccCcccccCHHHHHHHH--HHhccCCcEEEEEeC
Q 007641 460 ARCRVPWHIEGGKLLLEL--NRVLRPGGFFIWSAT 492 (595)
Q Consensus 460 ~~c~v~~h~d~~~lL~El--~RvLKPGG~Lvis~p 492 (595)
-..+.. . ....++..+ ..+|+++|.+++-.+
T Consensus 128 DPPy~~-~-~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 128 DPPFFN-G-ALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred CcCCCC-C-cHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 763321 1 223444433 347899998888653
No 188
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=0.00013 Score=71.80 Aligned_cols=118 Identities=17% Similarity=0.100 Sum_probs=77.4
Q ss_pred CCCEEEEECCCCchhHHHHhh---CCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCcc
Q 007641 389 RTRVVLDVGCGVASFGGFLFD---RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~---r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~ 465 (595)
.+++|||+|||||.++...+- +.|+++|+++..+..+..+ +.+.+..+.+.+.+..++. ..||.|+++.++=.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N-~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARAN-AEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHH-HHhhCCceEEEEcchhhcC---CccceEEECCCCcc
Confidence 478999999999987755444 4899999999888766533 4445556777887776665 56899999874322
Q ss_pred c--ccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEEe
Q 007641 466 W--HIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSIS 523 (595)
Q Consensus 466 ~--h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~~ 523 (595)
+ |.| ..+|..+.++- -++.+.+. .....-++..+..+|+.+....
T Consensus 121 ~~rhaD-r~Fl~~Ale~s----~vVYsiH~--------a~~~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 121 QRRHAD-RPFLLKALEIS----DVVYSIHK--------AGSRDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred ccccCC-HHHHHHHHHhh----heEEEeec--------cccHHHHHHHHHhcCCeEEEEE
Confidence 2 323 45555555544 23333211 0133566778888998877664
No 189
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.85 E-value=0.00042 Score=68.17 Aligned_cols=141 Identities=21% Similarity=0.157 Sum_probs=86.5
Q ss_pred hHHHHHHHHHhcccccCCCCCC-EEEEECCCCchhHHHHhh----CCcEEEeCCchhHHHHHHHHHHHcCCCe-eEeecC
Q 007641 370 ALHYIDFIQESVPDVAWGKRTR-VVLDVGCGVASFGGFLFD----RGVLTMSFAPKDEHEAQVQFALERGIPA-ISAVMG 443 (595)
Q Consensus 370 a~~yid~L~~~L~~l~~~~~~~-rVLDIGCGtG~~a~~La~----r~V~giDisp~di~~aqvq~A~ergi~~-~~~v~d 443 (595)
...+..++.+.+..+..-.... +|||||+|.|.-|..|+= ..|+.+|-...-+.- ....+.+.++.. .+....
T Consensus 28 ~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~F-L~~~~~~L~L~nv~v~~~R 106 (184)
T PF02527_consen 28 EEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAF-LKEVVRELGLSNVEVINGR 106 (184)
T ss_dssp HHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHH-HHHHHHHHT-SSEEEEES-
T ss_pred HHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHH-HHHHHHHhCCCCEEEEEee
Confidence 3445555555554433322233 899999999987766654 378899988654322 223455668874 444444
Q ss_pred CCCCCCCCCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEEe
Q 007641 444 TERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSIS 523 (595)
Q Consensus 444 ~~~LPfpd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~~ 523 (595)
++. +.....||+|++.. +. ....++.-+.++|++||++++.--+ ................++......
T Consensus 107 ~E~-~~~~~~fd~v~aRA--v~---~l~~l~~~~~~~l~~~G~~l~~KG~------~~~~El~~~~~~~~~~~~~~~~v~ 174 (184)
T PF02527_consen 107 AEE-PEYRESFDVVTARA--VA---PLDKLLELARPLLKPGGRLLAYKGP------DAEEELEEAKKAWKKLGLKVLSVP 174 (184)
T ss_dssp HHH-TTTTT-EEEEEEES--SS---SHHHHHHHHGGGEEEEEEEEEEESS--------HHHHHTHHHHHHCCCEEEEEEE
T ss_pred ecc-cccCCCccEEEeeh--hc---CHHHHHHHHHHhcCCCCEEEEEcCC------ChHHHHHHHHhHHHHhCCEEeeec
Confidence 555 44567899999964 32 4568899999999999999987422 111233445555666777665543
No 190
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.82 E-value=1.1e-05 Score=83.48 Aligned_cols=98 Identities=29% Similarity=0.301 Sum_probs=69.8
Q ss_pred CCCEEEEECCCCchhHHHHhhCCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCccccc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHI 468 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h~ 468 (595)
.+..+||+|||.|-.+..--.-.++|+|++-. .+..++..+.. ...++++..+|+++.+||.+++.. +.+|+
T Consensus 45 ~gsv~~d~gCGngky~~~~p~~~~ig~D~c~~-----l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsia--vihhl 116 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGVNPLCLIIGCDLCTG-----LLGGAKRSGGD-NVCRADALKLPFREESFDAALSIA--VIHHL 116 (293)
T ss_pred CcceeeecccCCcccCcCCCcceeeecchhhh-----hccccccCCCc-eeehhhhhcCCCCCCccccchhhh--hhhhh
Confidence 37899999999996532211125778888743 33344444433 466777899999999999999975 55565
Q ss_pred C----HHHHHHHHHHhccCCcEEEEEeCCC
Q 007641 469 E----GGKLLLELNRVLRPGGFFIWSATPV 494 (595)
Q Consensus 469 d----~~~lL~El~RvLKPGG~Lvis~pp~ 494 (595)
. ...+|+++.|+|||||...|..-..
T Consensus 117 sT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 117 STRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred hhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 2 3699999999999999877765433
No 191
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.82 E-value=5.7e-05 Score=82.09 Aligned_cols=97 Identities=19% Similarity=0.116 Sum_probs=69.8
Q ss_pred CCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCCCCCCCCceeEEEecccCc
Q 007641 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~LPfpd~sFDlV~~~~c~v 464 (595)
..+|||++||+|.++..++.. .|+++|+++..+..++.+... .++. ..+...++..+......||+|++.. .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~-N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP--~ 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLEL-NGLENEKVFNKDANALLHEERKFDVVDIDP--F 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-hCCCceEEEhhhHHHHHhhcCCCCEEEECC--C
Confidence 458999999999999998763 599999999888777655433 3444 3345555433211135699999975 1
Q ss_pred ccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 465 PWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 465 ~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
-.+..+|..+.+.++|||+++++.+
T Consensus 135 ---Gs~~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 135 ---GSPAPFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred ---CCcHHHHHHHHHHhcCCCEEEEEec
Confidence 2346788887888999999999954
No 192
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.81 E-value=3.7e-05 Score=80.42 Aligned_cols=117 Identities=16% Similarity=0.143 Sum_probs=73.0
Q ss_pred HHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhh-----------CCcEEEeCCchhHHHHHHHHHHHcCCCe---
Q 007641 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD-----------RGVLTMSFAPKDEHEAQVQFALERGIPA--- 437 (595)
Q Consensus 372 ~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~-----------r~V~giDisp~di~~aqvq~A~ergi~~--- 437 (595)
...+++.+++. ..++.+|||..||+|.|+..+.. ..++|+|+++..+..++.+.... ++..
T Consensus 33 ~i~~l~~~~~~----~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~-~~~~~~~ 107 (311)
T PF02384_consen 33 EIVDLMVKLLN----PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLH-GIDNSNI 107 (311)
T ss_dssp HHHHHHHHHHT----T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHT-THHCBGC
T ss_pred HHHHHHHhhhh----ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhh-ccccccc
Confidence 34455555553 24567899999999999877765 27899999988877777665543 3222
Q ss_pred eEeecCCCCCCC-C-CCceeEEEecccCccc--cc-----------------C-HHHHHHHHHHhccCCcEEEEEeCC
Q 007641 438 ISAVMGTERLPF-P-GIVFDAVHCARCRVPW--HI-----------------E-GGKLLLELNRVLRPGGFFIWSATP 493 (595)
Q Consensus 438 ~~~v~d~~~LPf-p-d~sFDlV~~~~c~v~~--h~-----------------d-~~~lL~El~RvLKPGG~Lvis~pp 493 (595)
.+...+....+. . ...||+|+++.++... .. . ...++..+.+.|++||++++..|.
T Consensus 108 ~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 108 NIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp EEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred cccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 244444433332 2 4789999998755443 00 0 026888899999999999888764
No 193
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.79 E-value=9.1e-05 Score=76.34 Aligned_cols=136 Identities=15% Similarity=0.229 Sum_probs=75.2
Q ss_pred CCCEEEEECCCCchhHHHHhh---CCcEEEeCCchhHHHHHHHHHH---------------HcCCC-------------e
Q 007641 389 RTRVVLDVGCGVASFGGFLFD---RGVLTMSFAPKDEHEAQVQFAL---------------ERGIP-------------A 437 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~---r~V~giDisp~di~~aqvq~A~---------------ergi~-------------~ 437 (595)
.+.++||||||.-.+-..-+. .+|+..|+.+....+-+..... -.|.. +
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 467999999998654322222 2788889887655432211111 00100 1
Q ss_pred -eEeecCCC-CCCCCC-----CceeEEEecccCcccccCH---HHHHHHHHHhccCCcEEEEEeCC---CCC----cCch
Q 007641 438 -ISAVMGTE-RLPFPG-----IVFDAVHCARCRVPWHIEG---GKLLLELNRVLRPGGFFIWSATP---VYQ----KLPE 500 (595)
Q Consensus 438 -~~~v~d~~-~LPfpd-----~sFDlV~~~~c~v~~h~d~---~~lL~El~RvLKPGG~Lvis~pp---~~~----~l~e 500 (595)
.++.+|.. .-|+.. ..||+|++.+|+-.-..+. ..+++.+.++|||||+|++..-- .|. +++-
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~ 215 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPC 215 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE-
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEeccc
Confidence 13334542 233332 3599999988643333344 68899999999999999987421 111 0111
Q ss_pred hHHHHHHHHHHHHHcCCEEEEEee
Q 007641 501 DVEIWNAMSQLIKAMCWELVSISK 524 (595)
Q Consensus 501 ~i~~w~~le~Lak~~Gw~~v~~~~ 524 (595)
..-.-..+.+.++.+||.++....
T Consensus 216 l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 216 LPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp --B-HHHHHHHHHHTTEEEEEEEG
T ss_pred ccCCHHHHHHHHHHcCCEEEeccc
Confidence 001125777889999999877763
No 194
>PRK04148 hypothetical protein; Provisional
Probab=97.74 E-value=0.00026 Score=66.24 Aligned_cols=94 Identities=18% Similarity=0.197 Sum_probs=60.5
Q ss_pred HHHHHHhcccccCCCCCCEEEEECCCCch-hHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCC
Q 007641 374 IDFIQESVPDVAWGKRTRVVLDVGCGVAS-FGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFP 450 (595)
Q Consensus 374 id~L~~~L~~l~~~~~~~rVLDIGCGtG~-~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfp 450 (595)
.++|.+.++. ..+.+|||||||+|. ++..|++. .|+++|+++.. ++.+++.++.+ ...|...-.+.
T Consensus 5 ~~~l~~~~~~----~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~a-----V~~a~~~~~~~--v~dDlf~p~~~ 73 (134)
T PRK04148 5 AEFIAENYEK----GKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKA-----VEKAKKLGLNA--FVDDLFNPNLE 73 (134)
T ss_pred HHHHHHhccc----ccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHH-----HHHHHHhCCeE--EECcCCCCCHH
Confidence 3445555543 246789999999996 88888885 89999999763 45556666543 33443332221
Q ss_pred -CCceeEEEecccCcccccCHHHHHHHHHHhcc
Q 007641 451 -GIVFDAVHCARCRVPWHIEGGKLLLELNRVLR 482 (595)
Q Consensus 451 -d~sFDlV~~~~c~v~~h~d~~~lL~El~RvLK 482 (595)
-..+|+|++.++ ..+....+.++.+-+.
T Consensus 74 ~y~~a~liysirp----p~el~~~~~~la~~~~ 102 (134)
T PRK04148 74 IYKNAKLIYSIRP----PRDLQPFILELAKKIN 102 (134)
T ss_pred HHhcCCEEEEeCC----CHHHHHHHHHHHHHcC
Confidence 246999999772 2344566666666554
No 195
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.71 E-value=0.00017 Score=71.79 Aligned_cols=119 Identities=17% Similarity=0.118 Sum_probs=71.7
Q ss_pred eecCCCCccccCchHHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhh--C--CcEEEeCCchhHHHHHHHHHHH
Q 007641 357 LTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD--R--GVLTMSFAPKDEHEAQVQFALE 432 (595)
Q Consensus 357 ~~Fpggg~~F~~ga~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~--r--~V~giDisp~di~~aqvq~A~e 432 (595)
+.++-...+|..+-..-..+|.+.+. ++.+|||+.||.|.|+..++. + .|+++|+.|..+.....+..+.
T Consensus 75 f~~D~~kvyfs~rl~~Er~Ri~~~v~------~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lN 148 (200)
T PF02475_consen 75 FKVDLSKVYFSPRLSTERRRIANLVK------PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLN 148 (200)
T ss_dssp EEEETTTS---GGGHHHHHHHHTC--------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHT
T ss_pred EEEccceEEEccccHHHHHHHHhcCC------cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHc
Confidence 34444445555544444455555433 588999999999999999988 2 6999999998876665444433
Q ss_pred cCCC--eeEeecCCCCCCCCCCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEE
Q 007641 433 RGIP--AISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFI 488 (595)
Q Consensus 433 rgi~--~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lv 488 (595)
++. +.....|...++. ...||.|++.. +. ....+|..+.+++|+||.+.
T Consensus 149 -kv~~~i~~~~~D~~~~~~-~~~~drvim~l---p~--~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 149 -KVENRIEVINGDAREFLP-EGKFDRVIMNL---PE--SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -T-TTTEEEEES-GGG----TT-EEEEEE-----TS--SGGGGHHHHHHHEEEEEEEE
T ss_pred -CCCCeEEEEcCCHHHhcC-ccccCEEEECC---hH--HHHHHHHHHHHHhcCCcEEE
Confidence 443 3345566655543 68899999875 21 22368888999999999874
No 196
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.68 E-value=0.00022 Score=79.57 Aligned_cols=104 Identities=15% Similarity=0.195 Sum_probs=70.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCCe-eEeecCCCCCC-CCCCceeEEE--
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPA-ISAVMGTERLP-FPGIVFDAVH-- 458 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~~-~~~v~d~~~LP-fpd~sFDlV~-- 458 (595)
.++.+|||++||.|.-+.+|+.. .|++.|+++.-+...+ ..+.+.|+.. .+...+...++ .....||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~-~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLH-ANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 46889999999999988888774 6899999987665444 3334457765 34445554442 2236799999
Q ss_pred --eccc-CcccccC------H----------HHHHHHHHHhccCCcEEEEEeC
Q 007641 459 --CARC-RVPWHIE------G----------GKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 459 --~~~c-~v~~h~d------~----------~~lL~El~RvLKPGG~Lvis~p 492 (595)
|+.- .+.-+++ . ..+|..+.++|||||+||.++-
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 4421 1111111 0 3789999999999999988754
No 197
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.60 E-value=0.00055 Score=73.86 Aligned_cols=116 Identities=17% Similarity=0.181 Sum_probs=74.0
Q ss_pred CEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCC-CC-CC--------------C
Q 007641 391 RVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTER-LP-FP--------------G 451 (595)
Q Consensus 391 ~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~-LP-fp--------------d 451 (595)
.+|||++||+|.++..|++. .|+++|+++.++..++.+ +...++. +.+...++.. ++ +. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N-~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYN-IAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHH-HHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 57999999999999999884 799999999988777644 3344554 4455555432 11 10 1
Q ss_pred CceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHH-HHHHHHHHHcCCEEEEEee
Q 007641 452 IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIW-NAMSQLIKAMCWELVSISK 524 (595)
Q Consensus 452 ~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w-~~le~Lak~~Gw~~v~~~~ 524 (595)
..||+|+...++.- -...++..+. +|++.++++-.| ..+ +++..|.. ||++.....
T Consensus 287 ~~~D~v~lDPPR~G---~~~~~l~~l~---~~~~ivyvSC~p---------~tlarDl~~L~~--gY~l~~v~~ 343 (362)
T PRK05031 287 YNFSTIFVDPPRAG---LDDETLKLVQ---AYERILYISCNP---------ETLCENLETLSQ--THKVERFAL 343 (362)
T ss_pred CCCCEEEECCCCCC---CcHHHHHHHH---ccCCEEEEEeCH---------HHHHHHHHHHcC--CcEEEEEEE
Confidence 25899999874321 1234444443 478888888543 222 34555542 888766543
No 198
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00023 Score=70.97 Aligned_cols=95 Identities=19% Similarity=0.191 Sum_probs=62.4
Q ss_pred CCCEEEEECCCCchhHHHHhhC------CcEEEeCCchhHHHHHHHHHHHc----------CCCeeEeecCCCCCCCCCC
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR------GVLTMSFAPKDEHEAQVQFALER----------GIPAISAVMGTERLPFPGI 452 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r------~V~giDisp~di~~aqvq~A~er----------gi~~~~~v~d~~~LPfpd~ 452 (595)
++.+.||||.|+|.++..++.. .++||+.-+..+..+..++-... .-...+.+.+....--+..
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a 161 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQA 161 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccC
Confidence 6889999999999988777752 33788887665544433221111 0112344555544444557
Q ss_pred ceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEE
Q 007641 453 VFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (595)
Q Consensus 453 sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis 490 (595)
.||.|||.. ....+..++...|+|||.++|-
T Consensus 162 ~YDaIhvGA-------aa~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 162 PYDAIHVGA-------AASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CcceEEEcc-------CccccHHHHHHhhccCCeEEEe
Confidence 899999974 2335666778889999999985
No 199
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.57 E-value=0.00024 Score=72.71 Aligned_cols=142 Identities=13% Similarity=0.160 Sum_probs=86.9
Q ss_pred HHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcC----CCeeEeec
Q 007641 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERG----IPAISAVM 442 (595)
Q Consensus 371 ~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~erg----i~~~~~v~ 442 (595)
..|...|. +++.+.. ...++||=||-|.|..+..|++. .|+.+||++..+..++.-+..... ..+.+...
T Consensus 60 ~~y~e~l~-h~~~~~~-~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~ 137 (246)
T PF01564_consen 60 FIYHEMLV-HPPLLLH-PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIG 137 (246)
T ss_dssp HHHHHHHH-HHHHHHS-SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEES
T ss_pred HHHHHHHh-hhHhhcC-CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEh
Confidence 34444443 3332222 25889999999999999999885 689999998877766544433222 23445555
Q ss_pred CCCC-CCCCCC-ceeEEEecccCccccc----CHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcC
Q 007641 443 GTER-LPFPGI-VFDAVHCARCRVPWHI----EGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMC 516 (595)
Q Consensus 443 d~~~-LPfpd~-sFDlV~~~~c~v~~h~----d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~G 516 (595)
|... +--... .||+|+.-.. -+... -...+++.+.++|+|||.|++-....+. .......+...++..+
T Consensus 138 Dg~~~l~~~~~~~yDvIi~D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~----~~~~~~~i~~tl~~~F 212 (246)
T PF01564_consen 138 DGRKFLKETQEEKYDVIIVDLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFL----HPELFKSILKTLRSVF 212 (246)
T ss_dssp THHHHHHTSSST-EEEEEEESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTT----THHHHHHHHHHHHTTS
T ss_pred hhHHHHHhccCCcccEEEEeCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCccc----chHHHHHHHHHHHHhC
Confidence 5321 111223 8999998531 12111 2369999999999999999987532221 1234566667777777
Q ss_pred CEE
Q 007641 517 WEL 519 (595)
Q Consensus 517 w~~ 519 (595)
..+
T Consensus 213 ~~v 215 (246)
T PF01564_consen 213 PQV 215 (246)
T ss_dssp SEE
T ss_pred Cce
Confidence 644
No 200
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.56 E-value=0.00021 Score=69.10 Aligned_cols=97 Identities=16% Similarity=0.136 Sum_probs=68.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCC-----CCCCCceeEEE
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL-----PFPGIVFDAVH 458 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~L-----Pfpd~sFDlV~ 458 (595)
.+.-||++|.|||.++..++++ .+++++.++...+.-+ ++-..+.++.+++..+ -+.+..||.|+
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~-----~~~p~~~ii~gda~~l~~~l~e~~gq~~D~vi 122 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLN-----QLYPGVNIINGDAFDLRTTLGEHKGQFFDSVI 122 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHH-----HhCCCccccccchhhHHHHHhhcCCCeeeeEE
Confidence 4778999999999999999996 6789999876543322 3322233444444333 25667899999
Q ss_pred ecccCcccccC-HHHHHHHHHHhccCCcEEEEE
Q 007641 459 CARCRVPWHIE-GGKLLLELNRVLRPGGFFIWS 490 (595)
Q Consensus 459 ~~~c~v~~h~d-~~~lL~El~RvLKPGG~Lvis 490 (595)
|...+...... .-++|..+...|++||.|+-.
T Consensus 123 S~lPll~~P~~~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 123 SGLPLLNFPMHRRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred eccccccCcHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 97544333333 368999999999999999865
No 201
>PRK00536 speE spermidine synthase; Provisional
Probab=97.53 E-value=0.0012 Score=68.48 Aligned_cols=136 Identities=13% Similarity=0.004 Sum_probs=84.0
Q ss_pred HHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHH---HHHcCCCeeEeecCCCCC
Q 007641 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQF---ALERGIPAISAVMGTERL 447 (595)
Q Consensus 373 yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~---A~ergi~~~~~v~d~~~L 447 (595)
.+..+.-+++.+..+ ..++||=||.|-|..++.++++ .|+-+||++..+..++.-+ +.....|.+..+.....
T Consensus 57 iYHEmLvHppl~~h~-~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~- 134 (262)
T PRK00536 57 IESELLAHMGGCTKK-ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLD- 134 (262)
T ss_pred hHHHHHHHHHHhhCC-CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhh-
Confidence 344455555554444 4789999999999999999997 7999999987665554211 11111222222211111
Q ss_pred CCCCCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEE
Q 007641 448 PFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSI 522 (595)
Q Consensus 448 Pfpd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~ 522 (595)
-..++||+|++-. . ....+++.++|+|+|||.|+.-....+-. ...+..+.+.++. .|..+..
T Consensus 135 -~~~~~fDVIIvDs--~----~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~----~~~~~~i~~~l~~-~F~~v~~ 197 (262)
T PRK00536 135 -LDIKKYDLIICLQ--E----PDIHKIDGLKRMLKEDGVFISVAKHPLLE----HVSMQNALKNMGD-FFSIAMP 197 (262)
T ss_pred -ccCCcCCEEEEcC--C----CChHHHHHHHHhcCCCcEEEECCCCcccC----HHHHHHHHHHHHh-hCCceEE
Confidence 1236899999863 1 34688899999999999999865433322 2334455555555 5664433
No 202
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.52 E-value=0.00045 Score=75.29 Aligned_cols=103 Identities=17% Similarity=0.030 Sum_probs=76.5
Q ss_pred CCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcC--CCeeEeecCCC-CCC---CCCCceeEEEec
Q 007641 390 TRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERG--IPAISAVMGTE-RLP---FPGIVFDAVHCA 460 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~erg--i~~~~~v~d~~-~LP---fpd~sFDlV~~~ 460 (595)
+++|||+=|=||.|+.+.+.. .|++||+|...+.-++.++....- ..+.+++.|+. -|. -....||+|++-
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD 297 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD 297 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence 789999999999999998883 899999999988888877665442 22456666642 222 233489999997
Q ss_pred ccCccccc--------CHHHHHHHHHHhccCCcEEEEEeC
Q 007641 461 RCRVPWHI--------EGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 461 ~c~v~~h~--------d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
.+.+.-.. +-..++..+.++|+|||.|+++..
T Consensus 298 PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 298 PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred CcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 75443322 224788899999999999998854
No 203
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.49 E-value=0.0022 Score=64.91 Aligned_cols=97 Identities=14% Similarity=0.058 Sum_probs=67.6
Q ss_pred CCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCC--eeEeecCC-CCCC-----CCCCceeE
Q 007641 390 TRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGT-ERLP-----FPGIVFDA 456 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~--~~~~v~d~-~~LP-----fpd~sFDl 456 (595)
.+++||||.=||..+..++.+ .|+++|+.+.....+. ++.+..|+. +.+....+ +.|+ ...++||+
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~-~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGL-ELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhH-HHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 679999999999877777664 8999999987666663 444444443 22333322 2221 35688999
Q ss_pred EEecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 457 VHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 457 V~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
|+.-. |-.+-..++.++.++||+||+|++..
T Consensus 153 aFvDa----dK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 153 AFVDA----DKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEEcc----chHHHHHHHHHHHhhcccccEEEEec
Confidence 99754 33333588999999999999999863
No 204
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.47 E-value=0.00047 Score=77.75 Aligned_cols=105 Identities=10% Similarity=0.021 Sum_probs=65.3
Q ss_pred CCEEEEECCCCchhHHHHhhC------------CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC-CC-C---CCCCC
Q 007641 390 TRVVLDVGCGVASFGGFLFDR------------GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT-ER-L---PFPGI 452 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r------------~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~-~~-L---Pfpd~ 452 (595)
..+|||.|||+|.|+..++.+ .++|+|+++..+..+.........+...+...+. .. + .-..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 568999999999998777652 5688888887766665444332212222222221 10 1 11125
Q ss_pred ceeEEEecccCcccccCH---------------------------------------------HHHH-HHHHHhccCCcE
Q 007641 453 VFDAVHCARCRVPWHIEG---------------------------------------------GKLL-LELNRVLRPGGF 486 (595)
Q Consensus 453 sFDlV~~~~c~v~~h~d~---------------------------------------------~~lL-~El~RvLKPGG~ 486 (595)
.||+|+++.++.....+. ..++ ..+.++|+|||+
T Consensus 112 ~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G~ 191 (524)
T TIGR02987 112 LFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNGY 191 (524)
T ss_pred cccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCCE
Confidence 799999998766432110 0133 457899999999
Q ss_pred EEEEeCCC
Q 007641 487 FIWSATPV 494 (595)
Q Consensus 487 Lvis~pp~ 494 (595)
+.+..|.-
T Consensus 192 ~~~I~P~s 199 (524)
T TIGR02987 192 VSIISPAS 199 (524)
T ss_pred EEEEEChH
Confidence 99988753
No 205
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.44 E-value=0.0019 Score=69.29 Aligned_cols=143 Identities=13% Similarity=0.084 Sum_probs=95.3
Q ss_pred ccccCchHHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCC-eeE
Q 007641 364 TQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP-AIS 439 (595)
Q Consensus 364 ~~F~~ga~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~-~~~ 439 (595)
.+|..+-..-...+.+.+. .+.+|||+=||.|.|+..++.. .|+++||.|..+...+.+..+.+--. +..
T Consensus 169 v~Fsprl~~ER~Rva~~v~------~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~ 242 (341)
T COG2520 169 VYFSPRLSTERARVAELVK------EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEP 242 (341)
T ss_pred eEECCCchHHHHHHHhhhc------CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeE
Confidence 3344443333344555544 3889999999999999999884 49999999988877765555544333 445
Q ss_pred eecCCCCCCCCCCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEE
Q 007641 440 AVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWEL 519 (595)
Q Consensus 440 ~v~d~~~LPfpd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~ 519 (595)
+.+|...++..-+.||-|++.. .. ....++..+.++|++||.+.+-.........+ .....+...+..+|+..
T Consensus 243 i~gD~rev~~~~~~aDrIim~~--p~---~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~--~~~~~i~~~~~~~~~~~ 315 (341)
T COG2520 243 ILGDAREVAPELGVADRIIMGL--PK---SAHEFLPLALELLKDGGIIHYYEFVPEDDIEE--RPEKRIKSAARKGGYKV 315 (341)
T ss_pred EeccHHHhhhccccCCEEEeCC--CC---cchhhHHHHHHHhhcCcEEEEEeccchhhccc--chHHHHHHHHhhccCcc
Confidence 6666666665548899999875 21 34588889999999999888653211111110 13467777788887643
No 206
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.44 E-value=0.0029 Score=63.92 Aligned_cols=154 Identities=15% Similarity=0.155 Sum_probs=92.9
Q ss_pred ccCchHHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCCeeEe
Q 007641 366 FKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISA 440 (595)
Q Consensus 366 F~~ga~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~~~~~ 440 (595)
|...+..+...|..-+..+ +-.++.+||-+|+.+|....++++- -|+++++++..... .+..|..|. +++-+
T Consensus 51 W~P~RSKLaAai~~Gl~~~-~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rd-L~~la~~R~-NIiPI 127 (229)
T PF01269_consen 51 WNPFRSKLAAAILKGLENI-PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRD-LLNLAKKRP-NIIPI 127 (229)
T ss_dssp E-TTT-HHHHHHHTT-S---S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHH-HHHHHHHST-TEEEE
T ss_pred cCchhhHHHHHHHcCcccc-CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHH-HHHHhccCC-ceeee
Confidence 4444555555555444322 2346899999999999999999872 68999999875533 346666663 34444
Q ss_pred ecCCCC---CCCCCCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeCCC-CCcCchhHHHHHHHHHHHHHcC
Q 007641 441 VMGTER---LPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPV-YQKLPEDVEIWNAMSQLIKAMC 516 (595)
Q Consensus 441 v~d~~~---LPfpd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~-~~~l~e~i~~w~~le~Lak~~G 516 (595)
..|+.. ...--...|+|++. +...-....++..+...||+||+|+|+.... ..-....-..|..-...++..+
T Consensus 128 l~DAr~P~~Y~~lv~~VDvI~~D---VaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~ 204 (229)
T PF01269_consen 128 LEDARHPEKYRMLVEMVDVIFQD---VAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEG 204 (229)
T ss_dssp ES-TTSGGGGTTTS--EEEEEEE----SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTT
T ss_pred eccCCChHHhhcccccccEEEec---CCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcC
Confidence 554421 11122479999985 3323344688888999999999999985321 1111122256766677778889
Q ss_pred CEEEEEeec
Q 007641 517 WELVSISKD 525 (595)
Q Consensus 517 w~~v~~~~~ 525 (595)
|+++.....
T Consensus 205 ~~~~e~i~L 213 (229)
T PF01269_consen 205 FKPLEQITL 213 (229)
T ss_dssp CEEEEEEE-
T ss_pred CChheEecc
Confidence 998776544
No 207
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.42 E-value=0.00046 Score=67.69 Aligned_cols=102 Identities=19% Similarity=0.124 Sum_probs=64.5
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCC--eeEeecCC-CCC---CCCCCceeEEEe
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGT-ERL---PFPGIVFDAVHC 459 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~--~~~~v~d~-~~L---Pfpd~sFDlV~~ 459 (595)
.+.+|||+-||+|.++...++| .|+.+|.++..+...+.+.. ..++. +.+...+. ..+ ......||+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~-~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLE-KLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHH-HHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHH-HhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 4789999999999999988886 78999999876655443433 33333 34455553 222 124578999999
Q ss_pred cccCcccccCHHHHHHHHH--HhccCCcEEEEEeC
Q 007641 460 ARCRVPWHIEGGKLLLELN--RVLRPGGFFIWSAT 492 (595)
Q Consensus 460 ~~c~v~~h~d~~~lL~El~--RvLKPGG~Lvis~p 492 (595)
..++.... ....+|..+. .+|+++|.+++-..
T Consensus 121 DPPY~~~~-~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 121 DPPYAKGL-YYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp --STTSCH-HHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CCCcccch-HHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 87432211 1256777766 79999999998764
No 208
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.40 E-value=0.00048 Score=72.74 Aligned_cols=98 Identities=18% Similarity=0.257 Sum_probs=60.3
Q ss_pred CCCEEEEECCCCchhHHHHhh---CCcEEEeCCchhHHHHHHHHHHHcCCCeeEee-cCCCCCCCCCCceeEEEecccCc
Q 007641 389 RTRVVLDVGCGVASFGGFLFD---RGVLTMSFAPKDEHEAQVQFALERGIPAISAV-MGTERLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~---r~V~giDisp~di~~aqvq~A~ergi~~~~~v-~d~~~LPfpd~sFDlV~~~~c~v 464 (595)
.++.|||||||.|.++...++ ++|++++.+. |...|+.-.+.......+..+ ...+.+.+| ...|+|++-. +
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEP--M 252 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEP--M 252 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEecc--c
Confidence 478999999999988877776 3899999864 222222222211111223333 335666666 6799999876 2
Q ss_pred ccccCHH---HHHHHHHHhccCCcEEEEE
Q 007641 465 PWHIEGG---KLLLELNRVLRPGGFFIWS 490 (595)
Q Consensus 465 ~~h~d~~---~lL~El~RvLKPGG~Lvis 490 (595)
-..+-.. .....++|.|+|.|.++-+
T Consensus 253 G~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 253 GYMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 2222222 3334567999999998844
No 209
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.39 E-value=0.0016 Score=67.67 Aligned_cols=136 Identities=17% Similarity=0.132 Sum_probs=76.8
Q ss_pred HHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhh-----CCcEEEeCCchhHHHHHHHHHHHc-CCCeeEeecC--CC
Q 007641 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALER-GIPAISAVMG--TE 445 (595)
Q Consensus 374 id~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~-----r~V~giDisp~di~~aqvq~A~er-gi~~~~~v~d--~~ 445 (595)
+..|...++. -..++|||+|||+|.-+..+.. ..++++|.++.++..++. ++... .......... ..
T Consensus 22 l~El~~r~p~----f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~-l~~~~~~~~~~~~~~~~~~~ 96 (274)
T PF09243_consen 22 LSELRKRLPD----FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKR-LLRAGPNNRNAEWRRVLYRD 96 (274)
T ss_pred HHHHHHhCcC----CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHH-HHhcccccccchhhhhhhcc
Confidence 3444444443 2467999999999975544443 278899999887765542 22211 1111111111 12
Q ss_pred CCCCCCCceeEEEecccCccccc---CHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEE
Q 007641 446 RLPFPGIVFDAVHCARCRVPWHI---EGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSI 522 (595)
Q Consensus 446 ~LPfpd~sFDlV~~~~c~v~~h~---d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~ 522 (595)
.+++. ..|+|++++ ++..+ ....++..+.+.+.+ +|||+.|. .+.+......+.+.+...|+.++.-
T Consensus 97 ~~~~~--~~DLvi~s~--~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpG----t~~Gf~~i~~aR~~l~~~~~~v~AP 166 (274)
T PF09243_consen 97 FLPFP--PDDLVIASY--VLNELPSAARAELVRSLWNKTAP--VLVLVEPG----TPAGFRRIAEARDQLLEKGAHVVAP 166 (274)
T ss_pred cccCC--CCcEEEEeh--hhhcCCchHHHHHHHHHHHhccC--cEEEEcCC----ChHHHHHHHHHHHHHhhCCCceECC
Confidence 23333 249999988 33333 235677777777766 88887653 2233334456666677777777655
Q ss_pred ee
Q 007641 523 SK 524 (595)
Q Consensus 523 ~~ 524 (595)
-.
T Consensus 167 Cp 168 (274)
T PF09243_consen 167 CP 168 (274)
T ss_pred Cc
Confidence 43
No 210
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.34 E-value=0.00074 Score=72.70 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=72.3
Q ss_pred CEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCC-CC-------C---C-----C
Q 007641 391 RVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTER-LP-------F---P-----G 451 (595)
Q Consensus 391 ~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~-LP-------f---p-----d 451 (595)
.+|||+|||+|.|+..|++. .|+++|+++.++..+..+. ...++. +.+...+... ++ + . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~-~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNI-AANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHH-HHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 46999999999999999884 8999999999887776443 344553 4455555432 11 1 0 1
Q ss_pred CceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHH-HHHHHHHHHHcCCEEEEEe
Q 007641 452 IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEI-WNAMSQLIKAMCWELVSIS 523 (595)
Q Consensus 452 ~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~-w~~le~Lak~~Gw~~v~~~ 523 (595)
..||+|+...+..- -...++..+ ++|++.++++-.| .. -+++..|. .+|++....
T Consensus 278 ~~~d~v~lDPPR~G---~~~~~l~~l---~~~~~ivYvsC~p---------~tlaRDl~~L~--~~Y~l~~v~ 333 (353)
T TIGR02143 278 YNCSTIFVDPPRAG---LDPDTCKLV---QAYERILYISCNP---------ETLKANLEQLS--ETHRVERFA 333 (353)
T ss_pred CCCCEEEECCCCCC---CcHHHHHHH---HcCCcEEEEEcCH---------HHHHHHHHHHh--cCcEEEEEE
Confidence 23899998764221 123444444 3488999988543 22 24555554 247766554
No 211
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.34 E-value=0.00062 Score=65.64 Aligned_cols=97 Identities=26% Similarity=0.356 Sum_probs=53.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCC--ee-EeecC-CCC-CCCCCCceeEEE
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AI-SAVMG-TER-LPFPGIVFDAVH 458 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~--~~-~~v~d-~~~-LPfpd~sFDlV~ 458 (595)
.+.+||||||++|.|+.+++++ .|+|+|+.+.... + .-..+. .. ..... ... ++-....||+|+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~----~--~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL----Q--NVSFIQGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-----T--TEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccc----c--ceeeeecccchhhHHHhhhhhccccccCcceec
Confidence 4689999999999999999986 5899999875110 0 000000 00 00000 111 111226899999
Q ss_pred ecccCc-c--cccCH-------HHHHHHHHHhccCCcEEEEEe
Q 007641 459 CARCRV-P--WHIEG-------GKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 459 ~~~c~v-~--~h~d~-------~~lL~El~RvLKPGG~Lvis~ 491 (595)
|-.+.- . +..+. ...|.-+..+|+|||.|++-.
T Consensus 97 ~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 97 SDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp E-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred cccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 964111 0 01111 234445667899999998865
No 212
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.31 E-value=0.0041 Score=62.72 Aligned_cols=148 Identities=16% Similarity=0.053 Sum_probs=92.4
Q ss_pred ccCchHHHHHHHHHhcccccCCCC-CCEEEEECCCCchhHHHHhh----CCcEEEeCCchhHHHHHHHHHHHcCCC-eeE
Q 007641 366 FKNGALHYIDFIQESVPDVAWGKR-TRVVLDVGCGVASFGGFLFD----RGVLTMSFAPKDEHEAQVQFALERGIP-AIS 439 (595)
Q Consensus 366 F~~ga~~yid~L~~~L~~l~~~~~-~~rVLDIGCGtG~~a~~La~----r~V~giDisp~di~~aqvq~A~ergi~-~~~ 439 (595)
......-|.+++...+........ ..+++|||.|.|.-+..|+= ..|+-+|-...-+.- ....+.+.+++ +.+
T Consensus 43 ~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~F-L~~~~~eL~L~nv~i 121 (215)
T COG0357 43 IRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAF-LREVKKELGLENVEI 121 (215)
T ss_pred CCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHH-HHHHHHHhCCCCeEE
Confidence 334445566666666553332222 58999999999988877662 368888876553221 12334566888 444
Q ss_pred eecCCCCCCCCCCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEE
Q 007641 440 AVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWEL 519 (595)
Q Consensus 440 ~v~d~~~LPfpd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~ 519 (595)
....++.+.-....||+|.|.. +- ....++.-+..+||+||+|++.. .......+...+......+|.+
T Consensus 122 ~~~RaE~~~~~~~~~D~vtsRA--va---~L~~l~e~~~pllk~~g~~~~~k------~~~~~~e~~e~~~a~~~~~~~~ 190 (215)
T COG0357 122 VHGRAEEFGQEKKQYDVVTSRA--VA---SLNVLLELCLPLLKVGGGFLAYK------GLAGKDELPEAEKAILPLGGQV 190 (215)
T ss_pred ehhhHhhcccccccCcEEEeeh--cc---chHHHHHHHHHhcccCCcchhhh------HHhhhhhHHHHHHHHHhhcCcE
Confidence 5555666652211199999864 22 44577778899999999987431 1122245567777788888887
Q ss_pred EEEeec
Q 007641 520 VSISKD 525 (595)
Q Consensus 520 v~~~~~ 525 (595)
......
T Consensus 191 ~~~~~~ 196 (215)
T COG0357 191 EKVFSL 196 (215)
T ss_pred EEEEEe
Confidence 766443
No 213
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.0034 Score=69.42 Aligned_cols=120 Identities=24% Similarity=0.275 Sum_probs=79.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCCCCC---CCCceeEEEecc
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPF---PGIVFDAVHCAR 461 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~LPf---pd~sFDlV~~~~ 461 (595)
.++.+|||+=||.|.|+.+|+.+ .|+|+++++.++..|+.+ |+..++. +.+...+++.+.. ....||+|+...
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~N-A~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDP 370 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQEN-AAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDP 370 (432)
T ss_pred cCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHH-HHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECC
Confidence 35689999999999999999974 899999999999888754 4455555 4455555555432 235789999876
Q ss_pred cCcccccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEE
Q 007641 462 CRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVS 521 (595)
Q Consensus 462 c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~ 521 (595)
+.-- -...+++.+. -++|-.+++++-.| ..+..=...+...|+.+..
T Consensus 371 PR~G---~~~~~lk~l~-~~~p~~IvYVSCNP---------~TlaRDl~~L~~~gy~i~~ 417 (432)
T COG2265 371 PRAG---ADREVLKQLA-KLKPKRIVYVSCNP---------ATLARDLAILASTGYEIER 417 (432)
T ss_pred CCCC---CCHHHHHHHH-hcCCCcEEEEeCCH---------HHHHHHHHHHHhCCeEEEE
Confidence 3211 1235555544 45778888888543 3333333456667776433
No 214
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.27 E-value=0.0074 Score=64.72 Aligned_cols=137 Identities=12% Similarity=0.057 Sum_probs=80.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCcc
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~ 465 (595)
.++.++|||||++|.|+..|+++ .|++||..+.+- .......+.....+......+.+.||+|+|-. +
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~-------~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDm--v- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQ-------SLMDTGQVEHLRADGFKFRPPRKNVDWLVCDM--V- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCH-------hhhCCCCEEEEeccCcccCCCCCCCCEEEEec--c-
Confidence 46899999999999999999997 589999654321 11122234444444433321257899999964 2
Q ss_pred cccCHHHHHHHHHHhccCC--cEEEEEeCCCCCc-CchhHHHHHHHHHHHHHcCCE-EEEEeecccCceEEEEEE
Q 007641 466 WHIEGGKLLLELNRVLRPG--GFFIWSATPVYQK-LPEDVEIWNAMSQLIKAMCWE-LVSISKDTINKVGIAVYR 536 (595)
Q Consensus 466 ~h~d~~~lL~El~RvLKPG--G~Lvis~pp~~~~-l~e~i~~w~~le~Lak~~Gw~-~v~~~~~~l~~~giaI~~ 536 (595)
..|..++.-|.+.|..| ..+|+..-..... ..+-......|...+...|.. .+..+...-+...++++-
T Consensus 280 --e~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~~~l~~~g~~~~~~~khLyHdReEiTv~~ 352 (357)
T PRK11760 280 --EKPARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIEEQLDENGINAQIQAKQLYHDREEVTVHL 352 (357)
T ss_pred --cCHHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCccceeeeeeecCCceEEEEE
Confidence 25667778888888766 3666654322222 222222334566667777752 223323333334455554
No 215
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.0077 Score=62.44 Aligned_cols=131 Identities=17% Similarity=0.170 Sum_probs=86.4
Q ss_pred HHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCC--eeEeecCCCC
Q 007641 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTER 446 (595)
Q Consensus 374 id~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~--~~~~v~d~~~ 446 (595)
+.+|..+|.. .++.+||+-|.|+|+++.+|++. +++.+|+...-...|...| ++.|+. +.+.+-|...
T Consensus 94 ia~I~~~L~i----~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeF-r~hgi~~~vt~~hrDVc~ 168 (314)
T KOG2915|consen 94 IAMILSMLEI----RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEF-REHGIGDNVTVTHRDVCG 168 (314)
T ss_pred HHHHHHHhcC----CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHH-HHhCCCcceEEEEeeccc
Confidence 4555555543 57899999999999999999884 7899999644333333222 334443 4555566655
Q ss_pred CCCC--CCceeEEEecccCcccccCHHHHHHHHHHhccCCc-EEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEEe
Q 007641 447 LPFP--GIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGG-FFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSIS 523 (595)
Q Consensus 447 LPfp--d~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG-~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~~ 523 (595)
..|. +..+|+|+.-. +.|..++-.++.+||-+| +|+-..| =++.-..--+++.++||..+...
T Consensus 169 ~GF~~ks~~aDaVFLDl------PaPw~AiPha~~~lk~~g~r~csFSP--------CIEQvqrtce~l~~~gf~~i~~v 234 (314)
T KOG2915|consen 169 SGFLIKSLKADAVFLDL------PAPWEAIPHAAKILKDEGGRLCSFSP--------CIEQVQRTCEALRSLGFIEIETV 234 (314)
T ss_pred CCccccccccceEEEcC------CChhhhhhhhHHHhhhcCceEEeccH--------HHHHHHHHHHHHHhCCCceEEEE
Confidence 5554 57899998753 245577777888999877 5543322 13344455667888999877663
No 216
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.23 E-value=0.003 Score=73.97 Aligned_cols=106 Identities=16% Similarity=0.021 Sum_probs=70.1
Q ss_pred CCCCCCEEEEECCCCchhHHHHhh----------------------------------------------CCcEEEeCCc
Q 007641 386 WGKRTRVVLDVGCGVASFGGFLFD----------------------------------------------RGVLTMSFAP 419 (595)
Q Consensus 386 ~~~~~~rVLDIGCGtG~~a~~La~----------------------------------------------r~V~giDisp 419 (595)
|..++..++|.+||+|.++...+. ..|+|+|+++
T Consensus 187 w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~ 266 (702)
T PRK11783 187 WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDP 266 (702)
T ss_pred CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCH
Confidence 434578999999999998855432 1489999999
Q ss_pred hhHHHHHHHHHHHcCCC--eeEeecCCCCCCCC--CCceeEEEecccCccccc---CHHHHHHHHHHhc---cCCcEEEE
Q 007641 420 KDEHEAQVQFALERGIP--AISAVMGTERLPFP--GIVFDAVHCARCRVPWHI---EGGKLLLELNRVL---RPGGFFIW 489 (595)
Q Consensus 420 ~di~~aqvq~A~ergi~--~~~~v~d~~~LPfp--d~sFDlV~~~~c~v~~h~---d~~~lL~El~RvL---KPGG~Lvi 489 (595)
.++..+..+.. ..|+. +.+...+...++.+ .++||+|+++.++..-.. +...+...+.+.| .||+.+++
T Consensus 267 ~av~~A~~N~~-~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~l 345 (702)
T PRK11783 267 RVIQAARKNAR-RAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAAL 345 (702)
T ss_pred HHHHHHHHHHH-HcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 99888875544 44553 45566676666544 357999999975433222 2234444444444 49998877
Q ss_pred EeC
Q 007641 490 SAT 492 (595)
Q Consensus 490 s~p 492 (595)
..+
T Consensus 346 lt~ 348 (702)
T PRK11783 346 FSS 348 (702)
T ss_pred EeC
Confidence 654
No 217
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.22 E-value=0.0015 Score=68.58 Aligned_cols=103 Identities=17% Similarity=0.084 Sum_probs=68.4
Q ss_pred CCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcC--CCeeEeecCCCC-CC--CCCCceeEEEecc
Q 007641 390 TRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERG--IPAISAVMGTER-LP--FPGIVFDAVHCAR 461 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~erg--i~~~~~v~d~~~-LP--fpd~sFDlV~~~~ 461 (595)
+++|||+=|=||.|+.+.+.. .|+.+|+|...+..++.+++...- -.+.+...|... +. -..+.||+|++-.
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDP 203 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDP 203 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECC
Confidence 689999999999999987764 699999999998888877665431 123455555422 11 1235899999987
Q ss_pred cCccccc-----CHHHHHHHHHHhccCCcEEEEEeC
Q 007641 462 CRVPWHI-----EGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 462 c~v~~h~-----d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
+.+.-.. +-..++..+.++|+|||+|+++..
T Consensus 204 PsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 204 PSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 5442211 225788889999999999987753
No 218
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.21 E-value=0.00084 Score=70.53 Aligned_cols=149 Identities=14% Similarity=0.082 Sum_probs=91.8
Q ss_pred HHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHc----C-C---Cee--
Q 007641 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALER----G-I---PAI-- 438 (595)
Q Consensus 371 ~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~er----g-i---~~~-- 438 (595)
..+++.|..+.+.....+...+||=-|||.|.++..|+.. .+.|=++|-.|+--. .|++.. + . |.+
T Consensus 132 kpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S--~FiLN~~~~~nq~~IYPfIh~ 209 (369)
T KOG2798|consen 132 KPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICS--SFILNYCKQENQFTIYPFIHQ 209 (369)
T ss_pred hhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHH--HHHHHhhccCCcEEEEeeeec
Confidence 3457777777775444445678999999999999999875 344445554443211 222211 0 0 000
Q ss_pred ------------------------------Ee-e-cCCCC-CC--CCCCceeEEEecccCccccc-CHHHHHHHHHHhcc
Q 007641 439 ------------------------------SA-V-MGTER-LP--FPGIVFDAVHCARCRVPWHI-EGGKLLLELNRVLR 482 (595)
Q Consensus 439 ------------------------------~~-v-~d~~~-LP--fpd~sFDlV~~~~c~v~~h~-d~~~lL~El~RvLK 482 (595)
+. . +|... .+ -..++||+|+..+ +.-.. +.-.+|..+..+||
T Consensus 210 ~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcf--FIDTa~NileYi~tI~~iLk 287 (369)
T KOG2798|consen 210 YSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCF--FIDTAHNILEYIDTIYKILK 287 (369)
T ss_pred cccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEE--EeechHHHHHHHHHHHHhcc
Confidence 00 0 00000 01 1123699998743 33222 45799999999999
Q ss_pred CCcEEEEEeCCCCCcCch-------hHH-HHHHHHHHHHHcCCEEEEEe
Q 007641 483 PGGFFIWSATPVYQKLPE-------DVE-IWNAMSQLIKAMCWELVSIS 523 (595)
Q Consensus 483 PGG~Lvis~pp~~~~l~e-------~i~-~w~~le~Lak~~Gw~~v~~~ 523 (595)
|||+|+=.+|-.|..-+. .++ ....+..++...||.++..+
T Consensus 288 ~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 288 PGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 999999888877764332 222 35889999999999988875
No 219
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.19 E-value=0.0019 Score=68.86 Aligned_cols=93 Identities=22% Similarity=0.222 Sum_probs=66.6
Q ss_pred CCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC-CCCCCCCCceeEEEecccCccc
Q 007641 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT-ERLPFPGIVFDAVHCARCRVPW 466 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~-~~LPfpd~sFDlV~~~~c~v~~ 466 (595)
...++|+|.|.|..+..++.. +|-+++++...+-.+...++ .|+ .....+. ..+|- -|+|++-++ ++
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~gV--~~v~gdmfq~~P~----~daI~mkWi--Lh 247 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PGV--EHVAGDMFQDTPK----GDAIWMKWI--LH 247 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CCc--ceecccccccCCC----cCeEEEEee--cc
Confidence 578999999999999998885 68888888665544443333 333 2333333 44553 369999884 44
Q ss_pred cc---CHHHHHHHHHHhccCCcEEEEEeC
Q 007641 467 HI---EGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 467 h~---d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
|. +...+|+.++..|+|||.+++...
T Consensus 248 dwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 248 DWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred cCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 54 237999999999999999999854
No 220
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.0037 Score=64.68 Aligned_cols=96 Identities=21% Similarity=0.232 Sum_probs=65.1
Q ss_pred HHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCC
Q 007641 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPG 451 (595)
Q Consensus 374 id~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd 451 (595)
++.|.+.+.. .++.+||+||+|.|.++..|+++ .|+++++++..+..-...++ ......+...|+...+|+.
T Consensus 19 ~~kIv~~a~~----~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 19 IDKIVEAANI----SPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHhcCC----CCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchh
Confidence 5555555443 34789999999999999999996 79999999775543332222 2334566777787787775
Q ss_pred C-ceeEEEecccCcccccCHHHHHHHHH
Q 007641 452 I-VFDAVHCARCRVPWHIEGGKLLLELN 478 (595)
Q Consensus 452 ~-sFDlV~~~~c~v~~h~d~~~lL~El~ 478 (595)
. .++.|+++ +++.+....+++-+.
T Consensus 93 l~~~~~vVaN---lPY~Isspii~kll~ 117 (259)
T COG0030 93 LAQPYKVVAN---LPYNISSPILFKLLE 117 (259)
T ss_pred hcCCCEEEEc---CCCcccHHHHHHHHh
Confidence 4 68999987 466665444443333
No 221
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.15 E-value=0.0018 Score=71.66 Aligned_cols=98 Identities=26% Similarity=0.349 Sum_probs=73.5
Q ss_pred EEEEECCCCchhHHHHhh---CCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCccccc
Q 007641 392 VVLDVGCGVASFGGFLFD---RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHI 468 (595)
Q Consensus 392 rVLDIGCGtG~~a~~La~---r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h~ 468 (595)
++|-+|||.-.+...+.. +.|+.+|+|+..+...++..++++ .-..+...+...+.|++.+||+|+.-.. +....
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~-~~~~~~~~d~~~l~fedESFdiVIdkGt-lDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER-PEMQMVEMDMDQLVFEDESFDIVIDKGT-LDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC-cceEEEEecchhccCCCcceeEEEecCc-ccccc
Confidence 899999999998888877 489999999998877766665322 2234566678899999999999997541 11110
Q ss_pred ----------CHHHHHHHHHHhccCCcEEEEEe
Q 007641 469 ----------EGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 469 ----------d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
.....+.+++|+|+|||.++...
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 12367889999999999987653
No 222
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.14 E-value=0.00066 Score=64.34 Aligned_cols=85 Identities=18% Similarity=0.179 Sum_probs=61.2
Q ss_pred HHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhh---CCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCC
Q 007641 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD---RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF 449 (595)
Q Consensus 373 yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~---r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPf 449 (595)
....|...+..+ .+..|+|+|||.|.+.....- ..|+|+||.|..+..+. +.|.+..+.+.+..++...+-+
T Consensus 36 M~~~Ih~Tygdi----Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~-rNaeEfEvqidlLqcdildle~ 110 (185)
T KOG3420|consen 36 MLYTIHNTYGDI----EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFT-RNAEEFEVQIDLLQCDILDLEL 110 (185)
T ss_pred HHHHHHhhhccc----cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHh-hchHHhhhhhheeeeeccchhc
Confidence 334444444443 378999999999987643332 48999999998776654 4455666666777787777777
Q ss_pred CCCceeEEEeccc
Q 007641 450 PGIVFDAVHCARC 462 (595)
Q Consensus 450 pd~sFDlV~~~~c 462 (595)
..+.||.++.+..
T Consensus 111 ~~g~fDtaviNpp 123 (185)
T KOG3420|consen 111 KGGIFDTAVINPP 123 (185)
T ss_pred cCCeEeeEEecCC
Confidence 7799999999873
No 223
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.13 E-value=0.0041 Score=67.14 Aligned_cols=129 Identities=20% Similarity=0.312 Sum_probs=80.9
Q ss_pred CCCCCEEEEECCCCchhHHHHhhC--C----cEEEeCCchhHHHHHHHHHHHcCCCe-eEeecCCCCCC---CCCCceeE
Q 007641 387 GKRTRVVLDVGCGVASFGGFLFDR--G----VLTMSFAPKDEHEAQVQFALERGIPA-ISAVMGTERLP---FPGIVFDA 456 (595)
Q Consensus 387 ~~~~~rVLDIGCGtG~~a~~La~r--~----V~giDisp~di~~aqvq~A~ergi~~-~~~v~d~~~LP---fpd~sFDl 456 (595)
+.++.+|||+.++.|.=+.+|++. + |+++|+++.-+... .....+.|+.. .....+...++ .....||.
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l-~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRL-RENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHH-HHHHHHcCCCceEEEecccccccccccccCcCcE
Confidence 457899999999999988888774 2 59999997644333 23444557764 45555554443 22235999
Q ss_pred EEecc-c----Ccc------cccCH----------HHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHc
Q 007641 457 VHCAR-C----RVP------WHIEG----------GKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAM 515 (595)
Q Consensus 457 V~~~~-c----~v~------~h~d~----------~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~ 515 (595)
|++-. | .+. |.... ..+|..+.++|||||+|+.++-.+... +.-..+..++++.
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e-----ENE~vV~~~L~~~ 307 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE-----ENEEVVERFLERH 307 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh-----cCHHHHHHHHHhC
Confidence 99532 2 121 22111 278999999999999999886443322 1123455566554
Q ss_pred -CCEEEE
Q 007641 516 -CWELVS 521 (595)
Q Consensus 516 -Gw~~v~ 521 (595)
+|..+.
T Consensus 308 ~~~~~~~ 314 (355)
T COG0144 308 PDFELEP 314 (355)
T ss_pred CCceeec
Confidence 555443
No 224
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.13 E-value=0.0028 Score=67.51 Aligned_cols=103 Identities=11% Similarity=0.132 Sum_probs=64.4
Q ss_pred CCCEEEEECCCCchhHHHHhhC--------CcEEEeCCchhHHHHHHHHHHHc--CCCeeEeecCC----CCCCC--CCC
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR--------GVLTMSFAPKDEHEAQVQFALER--GIPAISAVMGT----ERLPF--PGI 452 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r--------~V~giDisp~di~~aqvq~A~er--gi~~~~~v~d~----~~LPf--pd~ 452 (595)
++.+|+|+|||.|.-...|++. .++++|||...+..+..+..... .+.+.-+.++. ..++- ...
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 3668999999999765555442 48999999888877765554222 12222223321 12321 123
Q ss_pred ceeEEEecccCccccc--CHHHHHHHHHH-hccCCcEEEEEe
Q 007641 453 VFDAVHCARCRVPWHI--EGGKLLLELNR-VLRPGGFFIWSA 491 (595)
Q Consensus 453 sFDlV~~~~c~v~~h~--d~~~lL~El~R-vLKPGG~Lvis~ 491 (595)
...+|++....+.... ....+|+.+.+ +|+|||.|+|..
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 4677776543343322 23689999999 999999999874
No 225
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.0063 Score=62.01 Aligned_cols=128 Identities=20% Similarity=0.305 Sum_probs=86.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEee-cCCCCCC---CCCCceeEEEec
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAV-MGTERLP---FPGIVFDAVHCA 460 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v-~d~~~LP---fpd~sFDlV~~~ 460 (595)
.+++++||||+-||.|+..|+++ .|+++|+.-..+ ....+....++... .....+. |. ...|+|+|-
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql-----~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~D 151 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQL-----HWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVID 151 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCcc-----CHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEE
Confidence 46899999999999999999996 899999985533 33333333332222 2222221 22 256899986
Q ss_pred ccCcccccCHHHHHHHHHHhccCCcEEEEEeCCCCCc------------Cch-hHHHHHHHHHHHHHcCCEEEEEeec
Q 007641 461 RCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQK------------LPE-DVEIWNAMSQLIKAMCWELVSISKD 525 (595)
Q Consensus 461 ~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~------------l~e-~i~~w~~le~Lak~~Gw~~v~~~~~ 525 (595)
-. .+....+|-.+..+|+|+|.+++..-|-|.- .+. ....-..+..++...||.+......
T Consensus 152 vS----FISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~S 225 (245)
T COG1189 152 VS----FISLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKS 225 (245)
T ss_pred ee----hhhHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEcc
Confidence 42 2356789999999999999999886664421 111 1234478888999999998776544
No 226
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.04 E-value=0.0016 Score=70.73 Aligned_cols=96 Identities=8% Similarity=0.027 Sum_probs=69.7
Q ss_pred CEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCCC-CCCCCceeEEEecccC
Q 007641 391 RVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERL-PFPGIVFDAVHCARCR 463 (595)
Q Consensus 391 ~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~L-Pfpd~sFDlV~~~~c~ 463 (595)
-+|||+.||+|.++..++.+ .|+++|+++..+...+.+... .++. +.+...++..+ ......||+|+...
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~-N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEY-NSVENIEVPNEDAANVLRYRNRKFHVIDIDP-- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH-hCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--
Confidence 58999999999999988874 589999999887766555433 3333 44555554322 22235799999864
Q ss_pred cccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 464 VPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 464 v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
+ -.+..+|..+.+.+++||+|+++.+
T Consensus 123 f---Gs~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 123 F---GTPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred C---CCcHHHHHHHHHhcccCCEEEEEec
Confidence 2 1446899999999999999999954
No 227
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.00 E-value=0.0031 Score=62.55 Aligned_cols=106 Identities=20% Similarity=0.198 Sum_probs=68.6
Q ss_pred CCCEEEEECCCCchhHHHHhh---CCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCcc
Q 007641 389 RTRVVLDVGCGVASFGGFLFD---RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~---r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~ 465 (595)
.+++|||+|.|.|..+...+. ..|+..|+.|..+.... -.+...|+.+.+...+... .+..||+|+... ++.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~-lNa~angv~i~~~~~d~~g---~~~~~Dl~LagD-lfy 153 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIR-LNAAANGVSILFTHADLIG---SPPAFDLLLAGD-LFY 153 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhh-cchhhccceeEEeeccccC---CCcceeEEEeec-eec
Confidence 488999999999987765555 37899999865432222 2344456555444433322 567899999987 233
Q ss_pred cccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCch
Q 007641 466 WHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPE 500 (595)
Q Consensus 466 ~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e 500 (595)
.|.....++. ..+.|+-.|..++...|.-.++++
T Consensus 154 ~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~~lpk 187 (218)
T COG3897 154 NHTEADRLIP-WKDRLAEAGAAVLVGDPGRAYLPK 187 (218)
T ss_pred CchHHHHHHH-HHHHHHhCCCEEEEeCCCCCCCch
Confidence 3433456666 777777777777766665555555
No 228
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.97 E-value=0.0097 Score=58.77 Aligned_cols=103 Identities=20% Similarity=0.121 Sum_probs=67.5
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcC--CCeeEeecCCC-CCCCCCC--ceeEEEec
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERG--IPAISAVMGTE-RLPFPGI--VFDAVHCA 460 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~erg--i~~~~~v~d~~-~LPfpd~--sFDlV~~~ 460 (595)
.+.++||+=+|+|.++...++| .++.+|.+.........+. ...+ ..+.++..++. -|+-... .||+|+.-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~-~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENL-KALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHH-HHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 5789999999999999999887 7899999876654444332 2333 34555555543 2222223 49999998
Q ss_pred ccCcccccCHHHHHHH--HHHhccCCcEEEEEeC
Q 007641 461 RCRVPWHIEGGKLLLE--LNRVLRPGGFFIWSAT 492 (595)
Q Consensus 461 ~c~v~~h~d~~~lL~E--l~RvLKPGG~Lvis~p 492 (595)
.++-.-..+....+.. -..+|+|+|.+++-..
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 7432112222333333 5678999999998754
No 229
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.0078 Score=60.20 Aligned_cols=111 Identities=18% Similarity=0.184 Sum_probs=68.6
Q ss_pred cCchHHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCCeeEee
Q 007641 367 KNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAV 441 (595)
Q Consensus 367 ~~ga~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~~~~~v 441 (595)
...+..-+..|.+....+ .++.+|+|||+-.|+++..++++ .|+++|+.|..... + +.++.
T Consensus 26 RSRAa~KL~el~~k~~i~---~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~---------~--V~~iq 91 (205)
T COG0293 26 RSRAAYKLLELNEKFKLF---KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIP---------G--VIFLQ 91 (205)
T ss_pred cchHHHHHHHHHHhcCee---cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCC---------C--ceEEe
Confidence 333433344555554432 35889999999999999999885 49999998864322 1 34444
Q ss_pred cCCCCC--------CCCCCceeEEEecccC---cccccCH-------HHHHHHHHHhccCCcEEEEEe
Q 007641 442 MGTERL--------PFPGIVFDAVHCARCR---VPWHIEG-------GKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 442 ~d~~~L--------Pfpd~sFDlV~~~~c~---v~~h~d~-------~~lL~El~RvLKPGG~Lvis~ 491 (595)
.+...- -+....+|+|++-... -++..|. ..++.-+..+|+|||.|++-.
T Consensus 92 ~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 92 GDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred eeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 443211 1334457999975411 1122222 245556778999999999864
No 230
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.91 E-value=0.0074 Score=64.78 Aligned_cols=174 Identities=18% Similarity=0.169 Sum_probs=106.4
Q ss_pred eecCCCCccccCchHH-HHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHH
Q 007641 357 LTFPGGGTQFKNGALH-YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFAL 431 (595)
Q Consensus 357 ~~Fpggg~~F~~ga~~-yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ 431 (595)
-.|-.|+-+|...... |.+.+. .+.+..-+..++||-+|.|.|.-++.|.+. +|+-+|++|.|++.+.-..+.
T Consensus 258 rLYldG~LQfsTrDe~RYhEsLV--~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vl 335 (508)
T COG4262 258 RLYLDGGLQFSTRDEYRYHESLV--YPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVL 335 (508)
T ss_pred EEEEcCceeeeechhhhhhheee--ecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHh
Confidence 3455666777654433 333221 122222345789999999999999999885 799999999998777533332
Q ss_pred Hc---C---CC-eeEeecCCC-CCCCCCCceeEEEecccCccccc-----CHHHHHHHHHHhccCCcEEEEEeCCCCCcC
Q 007641 432 ER---G---IP-AISAVMGTE-RLPFPGIVFDAVHCARCRVPWHI-----EGGKLLLELNRVLRPGGFFIWSATPVYQKL 498 (595)
Q Consensus 432 er---g---i~-~~~~v~d~~-~LPfpd~sFDlV~~~~c~v~~h~-----d~~~lL~El~RvLKPGG~Lvis~pp~~~~l 498 (595)
.. + .+ +.++..|+. -+--....||+|+.... -+... ....+..-+.|.|+++|.+++.....|..
T Consensus 336 r~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~-DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~t- 413 (508)
T COG4262 336 RALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLP-DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFT- 413 (508)
T ss_pred hhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCC-CCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccC-
Confidence 22 1 12 233334432 22233458999997531 11111 12477888899999999999986544432
Q ss_pred chhHHHHHHHHHHHHHcCCEEEE--EeecccCceEEEEEEe
Q 007641 499 PEDVEIWNAMSQLIKAMCWELVS--ISKDTINKVGIAVYRK 537 (595)
Q Consensus 499 ~e~i~~w~~le~Lak~~Gw~~v~--~~~~~l~~~giaI~~K 537 (595)
...|-.+..-++++||...- ...-++..+|+.+-.+
T Consensus 414 ---p~vfw~i~aTik~AG~~~~Pyhv~VPTFGeWGf~l~~~ 451 (508)
T COG4262 414 ---PRVFWRIDATIKSAGYRVWPYHVHVPTFGEWGFILAAP 451 (508)
T ss_pred ---CceeeeehhHHHhCcceeeeeEEecCcccccceeeccc
Confidence 12344566778999988743 3344566777776553
No 231
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.00093 Score=64.35 Aligned_cols=127 Identities=13% Similarity=0.128 Sum_probs=75.4
Q ss_pred CCCEEEEECCCCchhH-HHHhhC----CcEEEeCCchhHHHHHHHHHHHcC----CCee-EeecC--CCCCCCCCCceeE
Q 007641 389 RTRVVLDVGCGVASFG-GFLFDR----GVLTMSFAPKDEHEAQVQFALERG----IPAI-SAVMG--TERLPFPGIVFDA 456 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a-~~La~r----~V~giDisp~di~~aqvq~A~erg----i~~~-~~v~d--~~~LPfpd~sFDl 456 (595)
.+++||++|.|.-.++ .+++-. .|...|-. +.+...++....+. +... ..... ..+.......||+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgn--e~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDi 106 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGN--EESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDI 106 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCC--HHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccE
Confidence 3689999999954444 444432 55555544 44444444433332 1111 11111 1122233468999
Q ss_pred EEecccCcccccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEEeec
Q 007641 457 VHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKD 525 (595)
Q Consensus 457 V~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~~~~ 525 (595)
|+|+.|+++ ......++.-|.++|||.|..++..|..- .....+.+.....||.+......
T Consensus 107 IlaADClFf-dE~h~sLvdtIk~lL~p~g~Al~fsPRRg-------~sL~kF~de~~~~gf~v~l~eny 167 (201)
T KOG3201|consen 107 ILAADCLFF-DEHHESLVDTIKSLLRPSGRALLFSPRRG-------QSLQKFLDEVGTVGFTVCLEENY 167 (201)
T ss_pred EEeccchhH-HHHHHHHHHHHHHHhCcccceeEecCccc-------chHHHHHHHHHhceeEEEecccH
Confidence 999998654 44457899999999999999888765311 23345666677778876554433
No 232
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.85 E-value=0.0069 Score=62.82 Aligned_cols=69 Identities=25% Similarity=0.323 Sum_probs=51.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCC----eeEeecCCCCCCCCCCceeEEEecc
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP----AISAVMGTERLPFPGIVFDAVHCAR 461 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~----~~~~v~d~~~LPfpd~sFDlV~~~~ 461 (595)
++...||+||.|||.++..|+++ .|++++++|.++.+-+.++ .|.+ ..+..+|...+++| .||+++++.
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv---~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsNl 131 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRV---QGTPKSGKLQVLHGDFLKTDLP--RFDGCVSNL 131 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHh---cCCCccceeeEEecccccCCCc--ccceeeccC
Confidence 57899999999999999999985 8999999999876655333 3444 34455665555544 599999863
No 233
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.83 E-value=0.0049 Score=62.01 Aligned_cols=109 Identities=18% Similarity=0.292 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCC---CeeEeecCC
Q 007641 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI---PAISAVMGT 444 (595)
Q Consensus 371 ~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi---~~~~~v~d~ 444 (595)
..++..+++.+. .++++||.||-|-|.....+.++ .-+.|+..|.-+ ..| +..|. ..++...+.
T Consensus 88 tpiMha~A~ai~-----tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~-krm----r~~gw~ek~nViil~g~ 157 (271)
T KOG1709|consen 88 TPIMHALAEAIS-----TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVL-KRM----RDWGWREKENVIILEGR 157 (271)
T ss_pred hHHHHHHHHHHh-----hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHH-HHH----HhcccccccceEEEecc
Confidence 455666666554 36899999999999888888776 345666665422 222 22222 123333332
Q ss_pred -CC-C-CCCCCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEE
Q 007641 445 -ER-L-PFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (595)
Q Consensus 445 -~~-L-Pfpd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis 490 (595)
++ + .++++.||.|+--. +-.+..+...+...+.|+|||+|+|-+.
T Consensus 158 WeDvl~~L~d~~FDGI~yDT-y~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 158 WEDVLNTLPDKHFDGIYYDT-YSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hHhhhccccccCcceeEeec-hhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 11 2 35788899999753 2233446678888999999999999865
No 234
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.79 E-value=0.017 Score=57.93 Aligned_cols=123 Identities=13% Similarity=0.010 Sum_probs=78.3
Q ss_pred EEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCC-CCCCCCCCc-eeEEEecccCcc
Q 007641 393 VLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGT-ERLPFPGIV-FDAVHCARCRVP 465 (595)
Q Consensus 393 VLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~-~~LPfpd~s-FDlV~~~~c~v~ 465 (595)
|.||||--|.+..+|+++ .++++|+++.-+..|+...++..... +.+...+. ..+ +.+. .|+|+.+. +-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l--~~~e~~d~ivIAG--MG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVL--KPGEDVDTIVIAG--MG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG----GGG---EEEEEE--E-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccccc--CCCCCCCEEEEec--CC
Confidence 689999999999999996 68999999998888876665533223 33444442 333 3333 78888765 22
Q ss_pred cccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEEeecccCce
Q 007641 466 WHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKDTINKV 530 (595)
Q Consensus 466 ~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~~~~~l~~~ 530 (595)
- .-...+|......++..-.|++.-. .....+.+++...||.++...-..-++.
T Consensus 77 G-~lI~~ILe~~~~~~~~~~~lILqP~----------~~~~~LR~~L~~~gf~I~~E~lv~e~~~ 130 (205)
T PF04816_consen 77 G-ELIIEILEAGPEKLSSAKRLILQPN----------THAYELRRWLYENGFEIIDEDLVEENGR 130 (205)
T ss_dssp H-HHHHHHHHHTGGGGTT--EEEEEES----------S-HHHHHHHHHHTTEEEEEEEEEEETTE
T ss_pred H-HHHHHHHHhhHHHhccCCeEEEeCC----------CChHHHHHHHHHCCCEEEEeEEEeECCE
Confidence 1 1235667777777777677887621 3456888999999999988766544333
No 235
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.71 E-value=0.0061 Score=61.03 Aligned_cols=118 Identities=16% Similarity=0.081 Sum_probs=59.1
Q ss_pred ccCchHHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhh----CCcEEEeCCchhHHHHHHHHH--H----HcCC
Q 007641 366 FKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD----RGVLTMSFAPKDEHEAQVQFA--L----ERGI 435 (595)
Q Consensus 366 F~~ga~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~----r~V~giDisp~di~~aqvq~A--~----ergi 435 (595)
|.......+..|.+.+.. .+....+|||||.|......+- +..+||++.+.-...+..... . ..|.
T Consensus 23 YGEi~~~~~~~il~~~~l----~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~ 98 (205)
T PF08123_consen 23 YGEISPEFVSKILDELNL----TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK 98 (205)
T ss_dssp GGGCHHHHHHHHHHHTT------TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB
T ss_pred eeecCHHHHHHHHHHhCC----CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444445555555542 4578999999999986544443 258999999865544432211 1 1232
Q ss_pred C---eeEeecCCCCCCCCC---CceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEE
Q 007641 436 P---AISAVMGTERLPFPG---IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIW 489 (595)
Q Consensus 436 ~---~~~~v~d~~~LPfpd---~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvi 489 (595)
. +.+...+....++.. ..-|+|+++. +.+..+.-..|.++..-||||-++|-
T Consensus 99 ~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn--~~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 99 RPGKVELIHGDFLDPDFVKDIWSDADVVFVNN--TCFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp ---EEEEECS-TTTHHHHHHHGHC-SEEEE----TTT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred ccccceeeccCccccHhHhhhhcCCCEEEEec--cccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 2 223333322221110 2359999986 33344455667788888998877653
No 236
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.69 E-value=0.017 Score=53.97 Aligned_cols=103 Identities=20% Similarity=0.104 Sum_probs=61.7
Q ss_pred CCCCEEEEECCCCchhHHHHhh-----C---CcEEEeCCchhHHHHHHHHHHHcCCC----eeEeecCCCCCCCCCCcee
Q 007641 388 KRTRVVLDVGCGVASFGGFLFD-----R---GVLTMSFAPKDEHEAQVQFALERGIP----AISAVMGTERLPFPGIVFD 455 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~-----r---~V~giDisp~di~~aqvq~A~ergi~----~~~~v~d~~~LPfpd~sFD 455 (595)
.+..+|+|+|||.|.++..|+. . .|+++|..+..+..++ ..+...+.. ..+......... .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQ-KRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHH-HHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 4678999999999999998888 3 8999999987765554 333333311 111111111111 134567
Q ss_pred EEEecccCcccccCH-HHHHHHHHHhccCCcEEEEEeCCCCCcCc
Q 007641 456 AVHCARCRVPWHIEG-GKLLLELNRVLRPGGFFIWSATPVYQKLP 499 (595)
Q Consensus 456 lV~~~~c~v~~h~d~-~~lL~El~RvLKPGG~Lvis~pp~~~~l~ 499 (595)
+++..+ ---+. ..+|+-+.+ |+-.+++..|-.|..+.
T Consensus 102 ~~vgLH----aCG~Ls~~~l~~~~~---~~~~~l~~vpCCyh~l~ 139 (141)
T PF13679_consen 102 ILVGLH----ACGDLSDRALRLFIR---PNARFLVLVPCCYHKLT 139 (141)
T ss_pred EEEEee----cccchHHHHHHHHHH---cCCCEEEEcCCccchhh
Confidence 776543 11132 455555554 77777777777776543
No 237
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.59 E-value=0.0032 Score=67.78 Aligned_cols=117 Identities=21% Similarity=0.228 Sum_probs=64.0
Q ss_pred CEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCe-eEeecCCCCC----------------CCCC
Q 007641 391 RVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPA-ISAVMGTERL----------------PFPG 451 (595)
Q Consensus 391 ~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~~-~~~v~d~~~L----------------Pfpd 451 (595)
..|||+-||+|.|+..|+.. .|+|+++.+.++..|..+ |...++.. .+...++..+ ....
T Consensus 198 ~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~N-a~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 276 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDAREN-AKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLKS 276 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHH-HHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGC
T ss_pred CcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHH-HHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhhh
Confidence 38999999999999999995 899999999988877644 44555554 3433332221 1122
Q ss_pred CceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEEee
Q 007641 452 IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISK 524 (595)
Q Consensus 452 ~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~~~ 524 (595)
..||+|+...++--.+ ..++..+. ++.=.++++-.| . -.-+++..|. .||++.....
T Consensus 277 ~~~d~vilDPPR~G~~---~~~~~~~~---~~~~ivYvSCnP------~--tlaRDl~~L~--~~y~~~~v~~ 333 (352)
T PF05958_consen 277 FKFDAVILDPPRAGLD---EKVIELIK---KLKRIVYVSCNP------A--TLARDLKILK--EGYKLEKVQP 333 (352)
T ss_dssp TTESEEEE---TT-SC---HHHHHHHH---HSSEEEEEES-H------H--HHHHHHHHHH--CCEEEEEEEE
T ss_pred cCCCEEEEcCCCCCch---HHHHHHHh---cCCeEEEEECCH------H--HHHHHHHHHh--hcCEEEEEEE
Confidence 3689998865332211 24444333 344455565321 1 1224555553 3888765543
No 238
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.53 E-value=0.079 Score=53.07 Aligned_cols=153 Identities=14% Similarity=0.162 Sum_probs=96.2
Q ss_pred ccCchHHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEee
Q 007641 366 FKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAV 441 (595)
Q Consensus 366 F~~ga~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v 441 (595)
|...+..+...|..-+..+. -+++.+||=+|+.+|....++++- .|+++++++.....- +..|.+|. +++-..
T Consensus 54 Wnp~RSKLaAaIl~Gl~~~p-i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reL-l~~a~~R~-Ni~PIL 130 (231)
T COG1889 54 WNPRRSKLAAAILKGLKNFP-IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMREL-LDVAEKRP-NIIPIL 130 (231)
T ss_pred eCcchhHHHHHHHcCcccCC-cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHH-HHHHHhCC-Cceeee
Confidence 44445455555544443222 246899999999999999999883 589999999876443 45666552 122222
Q ss_pred cCCCCCC----CCCCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeCCC-CCcCchhHHHHHHHHHHHHHcC
Q 007641 442 MGTERLP----FPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPV-YQKLPEDVEIWNAMSQLIKAMC 516 (595)
Q Consensus 442 ~d~~~LP----fpd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~-~~~l~e~i~~w~~le~Lak~~G 516 (595)
.|+ +.| +--...|+|++-- --.-....++.++...||+||++++..-.. -.-..+.-..|..-...+...+
T Consensus 131 ~DA-~~P~~Y~~~Ve~VDviy~DV---AQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~ 206 (231)
T COG1889 131 EDA-RKPEKYRHLVEKVDVIYQDV---AQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGG 206 (231)
T ss_pred ccc-CCcHHhhhhcccccEEEEec---CCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcC
Confidence 222 222 2224589998752 212234677888999999999988874211 1222333456776677778889
Q ss_pred CEEEEEeec
Q 007641 517 WELVSISKD 525 (595)
Q Consensus 517 w~~v~~~~~ 525 (595)
|+++.....
T Consensus 207 f~i~e~~~L 215 (231)
T COG1889 207 FEILEVVDL 215 (231)
T ss_pred ceeeEEecc
Confidence 998776544
No 239
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.52 E-value=0.0017 Score=62.13 Aligned_cols=74 Identities=26% Similarity=0.291 Sum_probs=55.2
Q ss_pred CCCCCCCCCceeEEEecccCccccc---CHHHHHHHHHHhccCCcEEEEEeCCCC------Cc-----------Cc--hh
Q 007641 444 TERLPFPGIVFDAVHCARCRVPWHI---EGGKLLLELNRVLRPGGFFIWSATPVY------QK-----------LP--ED 501 (595)
Q Consensus 444 ~~~LPfpd~sFDlV~~~~c~v~~h~---d~~~lL~El~RvLKPGG~Lvis~pp~~------~~-----------l~--e~ 501 (595)
....+|.+++.|+|++.+ +..|+ ....++++++|+|||||+|-+..|... .. -| ..
T Consensus 38 s~e~~F~dns~d~iyaeH--vlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpgpndhP~~r~ 115 (185)
T COG4627 38 SNESMFEDNSVDAIYAEH--VLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPGPNDHPLHRI 115 (185)
T ss_pred hhhccCCCcchHHHHHHH--HHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhhccCCCCCCCcHHHH
Confidence 456789999999999987 66776 346899999999999999999987531 11 11 12
Q ss_pred HHHHHHHHHHHHHcCCEE
Q 007641 502 VEIWNAMSQLIKAMCWEL 519 (595)
Q Consensus 502 i~~w~~le~Lak~~Gw~~ 519 (595)
+..+..|..++.++||.+
T Consensus 116 v~t~r~m~n~~m~~~~~~ 133 (185)
T COG4627 116 VKTMRMMFNGFMDAGFVV 133 (185)
T ss_pred HHHHHHHHHHHHhhhhee
Confidence 234577777788888764
No 240
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.40 E-value=0.11 Score=53.24 Aligned_cols=171 Identities=17% Similarity=0.173 Sum_probs=86.2
Q ss_pred CCCEEEEECCCCc-hhHHHHhh--CCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC-CCCCC-CCCceeEEEecccC
Q 007641 389 RTRVVLDVGCGVA-SFGGFLFD--RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT-ERLPF-PGIVFDAVHCARCR 463 (595)
Q Consensus 389 ~~~rVLDIGCGtG-~~a~~La~--r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~-~~LPf-pd~sFDlV~~~~c~ 463 (595)
.+++||=||=+-- +++..|.. +.|+.+||+...+..- .+.|.+.|+++.....|. ..||- --++||++++..
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI-~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDP-- 120 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFI-NRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDP-- 120 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHH-HHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHH-HHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCC--
Confidence 4789999996544 34444433 4899999998766443 367788899976666664 34442 137899999987
Q ss_pred cccccCH-HHHHHHHHHhccCCc-EEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEEeecccCceEEEEEEeCCCh
Q 007641 464 VPWHIEG-GKLLLELNRVLRPGG-FFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKDTINKVGIAVYRKPTSN 541 (595)
Q Consensus 464 v~~h~d~-~~lL~El~RvLKPGG-~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~~~~~l~~~giaI~~KP~~~ 541 (595)
++.+.. ..++......||.-| ..++.. ......+..|..+++++..+||-+...... +..|..-...
T Consensus 121 -PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~----~~~~~s~~~~~~~Q~~l~~~gl~i~dii~~------Fn~Y~ga~~i 189 (243)
T PF01861_consen 121 -PYTPEGLKLFLSRGIEALKGEGCAGYFGF----THKEASPDKWLEVQRFLLEMGLVITDIIPD------FNRYEGAEII 189 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEEEEE-----TTT--HHHHHHHHHHHHTS--EEEEEEEE------EEEB---S-G
T ss_pred -CCCHHHHHHHHHHHHHHhCCCCceEEEEE----ecCcCcHHHHHHHHHHHHHCCcCHHHHHhh------hcccccchhh
Confidence 455543 678888888998766 434432 122234678999999999999988777554 3444432221
Q ss_pred hHHhhhcCCCCCCcCCCCCCCCccccccccccccCCc
Q 007641 542 ECYEKRSQQQPPVCLGSDDPNAAWHVPLQACMHKVPE 578 (595)
Q Consensus 542 ~Cy~~r~~~~p~lC~~~~d~d~aWY~~L~~Ci~~~p~ 578 (595)
...... ...+. ...++..||......|..+..
T Consensus 190 ~~~~~~--~~l~v---~~~~~~~~y~s~~~rie~~~~ 221 (243)
T PF01861_consen 190 GNTRFW--QVLPV---KKRPEKIWYRSTMPRIETVRG 221 (243)
T ss_dssp GGSHHH--HHSSS-------SS---EEEEEEEE--TT
T ss_pred ccccee--EEecc---ccccccccccceeEEEEEecC
Confidence 111110 01111 125667899988887776654
No 241
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.26 E-value=0.029 Score=60.88 Aligned_cols=102 Identities=14% Similarity=0.068 Sum_probs=71.5
Q ss_pred CCCEEEEECCCCchhHHHHhhCC-------------------------------------------cEEEeCCchhHHHH
Q 007641 389 RTRVVLDVGCGVASFGGFLFDRG-------------------------------------------VLTMSFAPKDEHEA 425 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r~-------------------------------------------V~giDisp~di~~a 425 (595)
++..++|-=||+|.++...+-.. ++|+|+++.++..|
T Consensus 191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~A 270 (381)
T COG0116 191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGA 270 (381)
T ss_pred CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHH
Confidence 45799999999999886554421 67999999999888
Q ss_pred HHHHHHHcCCC--eeEeecCCCCCCCCCCceeEEEecccCccccc-C---H----HHHHHHHHHhccCCcEEEEEeC
Q 007641 426 QVQFALERGIP--AISAVMGTERLPFPGIVFDAVHCARCRVPWHI-E---G----GKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 426 qvq~A~ergi~--~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h~-d---~----~~lL~El~RvLKPGG~Lvis~p 492 (595)
. ..|+..|+. +.+.+.+...++-+-..+|+|+|+.++ -.-+ + . ..+...+.++|+--++++|+.+
T Consensus 271 k-~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPY-GeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 271 K-ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPY-GERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred H-HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCc-chhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 6 446667765 566777777775443789999999732 1111 1 1 2444556677777788888864
No 242
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.26 E-value=0.0086 Score=63.17 Aligned_cols=72 Identities=10% Similarity=0.009 Sum_probs=48.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCC--CCC--CceeEEEe
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP--FPG--IVFDAVHC 459 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LP--fpd--~sFDlV~~ 459 (595)
++..+||.+||.|..+..|+++ .|+|+|.++.++..++..... .-.+.+...+...+. .+. .+||.|++
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~ 96 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGLGKVDGILL 96 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCCCccCEEEE
Confidence 5779999999999999999885 599999999887776644322 223444444433221 111 26999987
Q ss_pred ccc
Q 007641 460 ARC 462 (595)
Q Consensus 460 ~~c 462 (595)
...
T Consensus 97 DLG 99 (296)
T PRK00050 97 DLG 99 (296)
T ss_pred CCC
Confidence 653
No 243
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.95 E-value=0.0082 Score=62.79 Aligned_cols=127 Identities=20% Similarity=0.320 Sum_probs=79.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCCeeEee-cCCCCC-C-CCCCceeEEEe
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAV-MGTERL-P-FPGIVFDAVHC 459 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~~~~~v-~d~~~L-P-fpd~sFDlV~~ 459 (595)
.++.+|||+.+|.|.-+.+|++. .|++.|+++.-+.... ..+.+.|+..+... .+...+ + .+...||.|+.
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~-~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLK-ENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHH-HHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHH-HHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 46889999999999988888773 6999999976554433 33445577655444 443333 2 23346999996
Q ss_pred cc-cC----cccccCH----------------HHHHHHHHHhc----cCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHH
Q 007641 460 AR-CR----VPWHIEG----------------GKLLLELNRVL----RPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKA 514 (595)
Q Consensus 460 ~~-c~----v~~h~d~----------------~~lL~El~RvL----KPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~ 514 (595)
-. |. +..+++. ..+|..+.+.| ||||+++.++-.+... +.-..+..++++
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~e-----ENE~vV~~fl~~ 237 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPE-----ENEEVVEKFLKR 237 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGG-----GTHHHHHHHHHH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHH-----HHHHHHHHHHHh
Confidence 32 21 1212211 27899999999 9999999987543322 112355566666
Q ss_pred c-CCEEE
Q 007641 515 M-CWELV 520 (595)
Q Consensus 515 ~-Gw~~v 520 (595)
. .|.++
T Consensus 238 ~~~~~l~ 244 (283)
T PF01189_consen 238 HPDFELV 244 (283)
T ss_dssp STSEEEE
T ss_pred CCCcEEE
Confidence 5 45543
No 244
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=95.81 E-value=0.039 Score=58.28 Aligned_cols=96 Identities=18% Similarity=0.217 Sum_probs=52.4
Q ss_pred CchHHHHHHHHHhcccccCC-CCCCEEEEECCCCchhHHHHhh----CCcEEEeCCchhHHHHHHHHHHHcCCC--eeEe
Q 007641 368 NGALHYIDFIQESVPDVAWG-KRTRVVLDVGCGVASFGGFLFD----RGVLTMSFAPKDEHEAQVQFALERGIP--AISA 440 (595)
Q Consensus 368 ~ga~~yid~L~~~L~~l~~~-~~~~rVLDIGCGtG~~a~~La~----r~V~giDisp~di~~aqvq~A~ergi~--~~~~ 440 (595)
.++..|+..|..+|...... ...-++||||||...+-..|.. -.++|.||++..+..|+....+..++. +.+.
T Consensus 80 P~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~ 159 (299)
T PF05971_consen 80 PNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELR 159 (299)
T ss_dssp HHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEE
T ss_pred chhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEE
Confidence 46678999998887642211 1256899999998854433333 389999999999988887776653443 2222
Q ss_pred ec-CC----CCCCCCCCceeEEEecccC
Q 007641 441 VM-GT----ERLPFPGIVFDAVHCARCR 463 (595)
Q Consensus 441 v~-d~----~~LPfpd~sFDlV~~~~c~ 463 (595)
.. .. ..+-.+...||+.+|+.++
T Consensus 160 ~~~~~~~i~~~i~~~~e~~dftmCNPPF 187 (299)
T PF05971_consen 160 KQKNPDNIFDGIIQPNERFDFTMCNPPF 187 (299)
T ss_dssp E--ST-SSTTTSTT--S-EEEEEE----
T ss_pred EcCCccccchhhhcccceeeEEecCCcc
Confidence 22 11 1222334689999999743
No 245
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.77 E-value=0.11 Score=51.83 Aligned_cols=135 Identities=15% Similarity=0.085 Sum_probs=71.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHH-------HHHHHHHHHcCCCeeEeec-CCCCCC-------
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEH-------EAQVQFALERGIPAISAVM-GTERLP------- 448 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~-------~aqvq~A~ergi~~~~~v~-d~~~LP------- 448 (595)
+++.+|+|+=.|.|.|++-|+.. + ....+.|.+.. ..+...+++........+. ....++
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G-~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~ 125 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKG-KVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDL 125 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCce-eEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccc
Confidence 47899999999999999988774 2 22233333220 1111222222221111111 111222
Q ss_pred CCCCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCc-hhHH-----HHHHHHHHHHHcCCEEEEE
Q 007641 449 FPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLP-EDVE-----IWNAMSQLIKAMCWELVSI 522 (595)
Q Consensus 449 fpd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~-e~i~-----~w~~le~Lak~~Gw~~v~~ 522 (595)
.+..++|.++... ..+......+.+.+++.|||||.+++..+....-.. .+.. .-..+.......||.+...
T Consensus 126 ~~~~~~yhdmh~k--~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~ae 203 (238)
T COG4798 126 VPTAQNYHDMHNK--NIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAE 203 (238)
T ss_pred cccchhhhhhhcc--ccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeee
Confidence 1223344433332 121223478999999999999999998654322111 1100 1145667788899998877
Q ss_pred eec
Q 007641 523 SKD 525 (595)
Q Consensus 523 ~~~ 525 (595)
...
T Consensus 204 S~i 206 (238)
T COG4798 204 SEI 206 (238)
T ss_pred ehh
Confidence 543
No 246
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=95.62 E-value=0.026 Score=54.62 Aligned_cols=69 Identities=23% Similarity=0.196 Sum_probs=42.5
Q ss_pred CEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCC--eeEeecCCC----CCCCCCCceeEEEecc
Q 007641 391 RVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTE----RLPFPGIVFDAVHCAR 461 (595)
Q Consensus 391 ~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~--~~~~v~d~~----~LPfpd~sFDlV~~~~ 461 (595)
..|||+.||.|..+..|++. .|+++|+++.-+.-++ .-|.-.|+. +.+...|.. .+.... .||+|+++.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~-hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~-~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAK-HNAEVYGVADNIDFICGDFFELLKRLKSNK-IFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHH-HHHHHTT-GGGEEEEES-HHHHGGGB-------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEeCCHHHHHhhccccc-cccEEEECC
Confidence 37999999999999999996 7999999988776655 345555653 455555532 222222 289999875
No 247
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=95.46 E-value=0.065 Score=55.24 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=63.9
Q ss_pred HHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCC
Q 007641 371 LHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP 448 (595)
Q Consensus 371 ~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LP 448 (595)
...++.|.+.+.. .++..|||||+|.|.++..|+++ .|+++++++.....-...+. ....+.+...|...+.
T Consensus 16 ~~~~~~Iv~~~~~----~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~ 89 (262)
T PF00398_consen 16 PNIADKIVDALDL----SEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWD 89 (262)
T ss_dssp HHHHHHHHHHHTC----GTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSC
T ss_pred HHHHHHHHHhcCC----CCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh--hcccceeeecchhccc
Confidence 3455666666543 25789999999999999999884 79999999764333221111 2334566667776666
Q ss_pred CCC---CceeEEEecccCcccccCHHHHHHHHHHhccC
Q 007641 449 FPG---IVFDAVHCARCRVPWHIEGGKLLLELNRVLRP 483 (595)
Q Consensus 449 fpd---~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKP 483 (595)
++. .....|+++ +++.. ...+|..+...-+.
T Consensus 90 ~~~~~~~~~~~vv~N---lPy~i-s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 90 LYDLLKNQPLLVVGN---LPYNI-SSPILRKLLELYRF 123 (262)
T ss_dssp GGGHCSSSEEEEEEE---ETGTG-HHHHHHHHHHHGGG
T ss_pred cHHhhcCCceEEEEE---ecccc-hHHHHHHHhhcccc
Confidence 543 345666665 34432 24566666554444
No 248
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=95.37 E-value=0.051 Score=60.77 Aligned_cols=70 Identities=24% Similarity=0.321 Sum_probs=51.6
Q ss_pred HHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecC-CCC
Q 007641 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMG-TER 446 (595)
Q Consensus 372 ~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~~~~~v~d-~~~ 446 (595)
-++..+.+++.. ..+..+||+-||||.++..|+++ .|+|+++++..+..|.. -|...|+.+..++.+ +++
T Consensus 370 vLys~i~e~~~l----~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~-nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 370 VLYSTIGEWAGL----PADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEK-NAQINGISNATFIVGQAED 442 (534)
T ss_pred HHHHHHHHHhCC----CCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhh-cchhcCccceeeeecchhh
Confidence 345555555443 45689999999999999999996 89999999998888764 456677765544444 443
No 249
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=95.37 E-value=0.14 Score=48.54 Aligned_cols=109 Identities=16% Similarity=0.191 Sum_probs=65.3
Q ss_pred CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecC-CCCCC--CCCCceeEEEecccCccccc-----CH---HHHHHHHHH
Q 007641 411 GVLTMSFAPKDEHEAQVQFALERGIPAISAVMG-TERLP--FPGIVFDAVHCARCRVPWHI-----EG---GKLLLELNR 479 (595)
Q Consensus 411 ~V~giDisp~di~~aqvq~A~ergi~~~~~v~d-~~~LP--fpd~sFDlV~~~~c~v~~h~-----d~---~~lL~El~R 479 (595)
+|+++||-...+...+.+.........+..+.+ -+.+. .+.+.+|+|+.+..+++-.- .+ -.+|..+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 388999998877777655544433333333433 33332 23358999999876665421 11 388999999
Q ss_pred hccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcC---CEEEEE
Q 007641 480 VLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMC---WELVSI 522 (595)
Q Consensus 480 vLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~G---w~~v~~ 522 (595)
+|+|||.++|.. |.--+.+.+....+..+++.+. |.+...
T Consensus 81 lL~~gG~i~iv~---Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~ 123 (140)
T PF06962_consen 81 LLKPGGIITIVV---YPGHPGGKEESEAVEEFLASLDQKEFNVLKY 123 (140)
T ss_dssp HEEEEEEEEEEE-----STCHHHHHHHHHHHHHHTS-TTTEEEEEE
T ss_pred hhccCCEEEEEE---eCCCCCCHHHHHHHHHHHHhCCcceEEEEEE
Confidence 999999999985 4433455566677777776654 665444
No 250
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.31 E-value=0.0061 Score=53.49 Aligned_cols=93 Identities=16% Similarity=0.141 Sum_probs=37.1
Q ss_pred EEECCCCchhHHHHhhC-------CcEEEeCCchhHHHHHHHHHHHcCCC--eeEeecCCC-CCC-CCCCceeEEEeccc
Q 007641 394 LDVGCGVASFGGFLFDR-------GVLTMSFAPKDEHEAQVQFALERGIP--AISAVMGTE-RLP-FPGIVFDAVHCARC 462 (595)
Q Consensus 394 LDIGCGtG~~a~~La~r-------~V~giDisp~di~~aqvq~A~ergi~--~~~~v~d~~-~LP-fpd~sFDlV~~~~c 462 (595)
|+||+..|..+..|++. .++++|..+. . ....+..++.++. +.+...+.. .++ ++...||+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~-~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-D-EQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG- 77 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-c-cccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-
Confidence 68999999888777762 5899999874 1 1112223323322 344444432 121 2357899999865
Q ss_pred CcccccCHHHHHHHHHHhccCCcEEEEE
Q 007641 463 RVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (595)
Q Consensus 463 ~v~~h~d~~~lL~El~RvLKPGG~Lvis 490 (595)
-|........|..+.+.|+|||++++-
T Consensus 78 -~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 78 -DHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred -CCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 222223467888999999999999874
No 251
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=95.02 E-value=0.33 Score=47.02 Aligned_cols=122 Identities=19% Similarity=0.200 Sum_probs=75.8
Q ss_pred ECCCCchhHHHHhhC-----CcEEEeCCchhHHH-------HHHHHHHHcCCCeeEeecCCCCC----CCCCCceeEEEe
Q 007641 396 VGCGVASFGGFLFDR-----GVLTMSFAPKDEHE-------AQVQFALERGIPAISAVMGTERL----PFPGIVFDAVHC 459 (595)
Q Consensus 396 IGCGtG~~a~~La~r-----~V~giDisp~di~~-------aqvq~A~ergi~~~~~v~d~~~L----Pfpd~sFDlV~~ 459 (595)
||=|.=+|+..|+.. .|++..+.....-. ..++..+..|+.+.+.+ |+..| .+....||.|+.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~V-Dat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGV-DATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCC-CCCcccccccccCCcCCEEEE
Confidence 566666788888874 67777776543211 12223345566555444 33333 235688999999
Q ss_pred cccCcccccC------------HHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEEee
Q 007641 460 ARCRVPWHIE------------GGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISK 524 (595)
Q Consensus 460 ~~c~v~~h~d------------~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~~~ 524 (595)
+++.+-.... ...+|..+.++|+++|.+.|+......+ ..| .+..+++..|+.++....
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py-----~~W-~i~~lA~~~gl~l~~~~~ 152 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY-----DSW-NIEELAAEAGLVLVRKVP 152 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC-----ccc-cHHHHHHhcCCEEEEEec
Confidence 8744431110 0378888999999999999986432111 223 456899999999877643
No 252
>PRK13699 putative methylase; Provisional
Probab=94.98 E-value=0.098 Score=53.07 Aligned_cols=73 Identities=16% Similarity=0.163 Sum_probs=47.9
Q ss_pred CCCCCceeEEEecccCccc---c----c--C-----HHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHH
Q 007641 448 PFPGIVFDAVHCARCRVPW---H----I--E-----GGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIK 513 (595)
Q Consensus 448 Pfpd~sFDlV~~~~c~v~~---h----~--d-----~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak 513 (595)
.++++++|+|++..++..- . . + ...++.+++|+|||||.+++... ++. ...+..++.
T Consensus 15 ~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~--~~~-------~~~~~~al~ 85 (227)
T PRK13699 15 RFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYG--WNR-------VDRFMAAWK 85 (227)
T ss_pred hCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEec--ccc-------HHHHHHHHH
Confidence 4678999999998755310 0 0 0 13788999999999999986432 111 123455677
Q ss_pred HcCCEEEEEeecccCceEEEEEEeCC
Q 007641 514 AMCWELVSISKDTINKVGIAVYRKPT 539 (595)
Q Consensus 514 ~~Gw~~v~~~~~~l~~~giaI~~KP~ 539 (595)
..||.+... .||.|+.
T Consensus 86 ~~GF~l~~~----------IiW~K~~ 101 (227)
T PRK13699 86 NAGFSVVGH----------LVFTKNY 101 (227)
T ss_pred HCCCEEeeE----------EEEECCC
Confidence 889986543 4677654
No 253
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=94.96 E-value=0.22 Score=52.16 Aligned_cols=101 Identities=16% Similarity=0.137 Sum_probs=55.1
Q ss_pred CCEEEEECCCCchhH-HHHhhC-----CcEEEeCCchhHHHHHHHHHH--HcCCCeeEeecCCCCCCCCCCceeEEEecc
Q 007641 390 TRVVLDVGCGVASFG-GFLFDR-----GVLTMSFAPKDEHEAQVQFAL--ERGIPAISAVMGTERLPFPGIVFDAVHCAR 461 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a-~~La~r-----~V~giDisp~di~~aqvq~A~--ergi~~~~~v~d~~~LPfpd~sFDlV~~~~ 461 (595)
.++|+=||||.=-++ ..|+++ .|+++|+++..+..++.-.+. ..+....+...+...++..-..||+|+.+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 469999999976544 444432 478999998877666422221 123334455555555554446899999874
Q ss_pred cCccccc-CHHHHHHHHHHhccCCcEEEEEe
Q 007641 462 CRVPWHI-EGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 462 c~v~~h~-d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
++.... +...+|..+.+.++||..+++..
T Consensus 201 -lVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 201 -LVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -T-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred -hcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 343232 45899999999999999999874
No 254
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.77 E-value=0.94 Score=46.02 Aligned_cols=153 Identities=14% Similarity=0.060 Sum_probs=98.5
Q ss_pred HHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCC
Q 007641 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF 449 (595)
Q Consensus 374 id~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPf 449 (595)
+..+...+.. +.+|.||||--|++..+|.+. .+++.|+.+.-+..|..++......+.+....+.-..++
T Consensus 7 L~~va~~V~~------~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l 80 (226)
T COG2384 7 LTTVANLVKQ------GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL 80 (226)
T ss_pred HHHHHHHHHc------CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc
Confidence 4555566553 556999999999999999985 689999999988888777766665555444444333344
Q ss_pred CC-CceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEEeecccC
Q 007641 450 PG-IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKDTIN 528 (595)
Q Consensus 450 pd-~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~~~~~l~ 528 (595)
.. ..+|+|+... +- ..-...+|.+-..-|+-=-+|++. |. . .-..+..++...+|.++...-..-+
T Consensus 81 ~~~d~~d~ivIAG--MG-G~lI~~ILee~~~~l~~~~rlILQ-Pn-~--------~~~~LR~~L~~~~~~I~~E~ileE~ 147 (226)
T COG2384 81 ELEDEIDVIVIAG--MG-GTLIREILEEGKEKLKGVERLILQ-PN-I--------HTYELREWLSANSYEIKAETILEED 147 (226)
T ss_pred CccCCcCEEEEeC--Cc-HHHHHHHHHHhhhhhcCcceEEEC-CC-C--------CHHHHHHHHHhCCceeeeeeeeccc
Confidence 33 3799998865 21 112246666666666633355543 21 1 1246788899999999887665544
Q ss_pred ceE--EEEEEeCCChhHHh
Q 007641 529 KVG--IAVYRKPTSNECYE 545 (595)
Q Consensus 529 ~~g--iaI~~KP~~~~Cy~ 545 (595)
+.. +.+..+.....||.
T Consensus 148 ~kiYEIlv~e~~~~~~~~~ 166 (226)
T COG2384 148 GKIYEILVVEKSSKPALYA 166 (226)
T ss_pred CeEEEEEEEecCCchhhhh
Confidence 443 44455554556774
No 255
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.65 E-value=0.15 Score=54.96 Aligned_cols=93 Identities=18% Similarity=0.206 Sum_probs=64.0
Q ss_pred CCCCEEEEECCC-CchhHHHHhh---CCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccC
Q 007641 388 KRTRVVLDVGCG-VASFGGFLFD---RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCR 463 (595)
Q Consensus 388 ~~~~rVLDIGCG-tG~~a~~La~---r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~ 463 (595)
+++.+|+=+|+| .|..+..++. +.|+++|.++ ...++|++.|....+...+...+.--...||+|+..-
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~-----~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv-- 237 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSE-----EKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV-- 237 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCCh-----HHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC--
Confidence 468899999988 3456666666 4899999984 4567788888765544332222211112399998742
Q ss_pred cccccCHHHHHHHHHHhccCCcEEEEEeCC
Q 007641 464 VPWHIEGGKLLLELNRVLRPGGFFIWSATP 493 (595)
Q Consensus 464 v~~h~d~~~lL~El~RvLKPGG~Lvis~pp 493 (595)
. ...+....+.||+||.+++..-+
T Consensus 238 -----~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 -----G-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -----C-hhhHHHHHHHHhcCCEEEEECCC
Confidence 2 46778888999999999998644
No 256
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.59 E-value=0.061 Score=57.70 Aligned_cols=114 Identities=21% Similarity=0.236 Sum_probs=59.6
Q ss_pred HHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCCe---eEeecCCC
Q 007641 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPA---ISAVMGTE 445 (595)
Q Consensus 374 id~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~~---~~~v~d~~ 445 (595)
++.|....+.+. ..+|||+|.|.|.-+.++-.- .++.++.++.. ..---..+....... ........
T Consensus 102 L~~L~~~~~dfa----pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~l-rkV~~tl~~nv~t~~td~r~s~vt~d 176 (484)
T COG5459 102 LDELQKRVPDFA----PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPAL-RKVGDTLAENVSTEKTDWRASDVTED 176 (484)
T ss_pred HHHHHHhCCCcC----cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHH-HHHHHHHHhhcccccCCCCCCccchh
Confidence 344555555433 456999999998655444432 44555555421 111001111111110 00111123
Q ss_pred CCCCCC-CceeEEEecccCccccc--CHHHHHHHHHHhccCCcEEEEEeC
Q 007641 446 RLPFPG-IVFDAVHCARCRVPWHI--EGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 446 ~LPfpd-~sFDlV~~~~c~v~~h~--d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
+++++. ..|++|+...-+++... ....+++.+..+|.|||.|+|..+
T Consensus 177 Rl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 177 RLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred ccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 555543 45787777653222111 124588999999999999999854
No 257
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=94.36 E-value=0.075 Score=48.71 Aligned_cols=39 Identities=18% Similarity=0.298 Sum_probs=31.8
Q ss_pred EEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHH
Q 007641 392 VVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFA 430 (595)
Q Consensus 392 rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A 430 (595)
+|||||||.|.++.+++.+ .|++++.++......+..++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~ 43 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVK 43 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHH
Confidence 4899999999999988874 59999999887766654444
No 258
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=94.20 E-value=0.33 Score=53.35 Aligned_cols=130 Identities=16% Similarity=0.189 Sum_probs=77.4
Q ss_pred CCCCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCCeeE-eecCCCCCC---CCCCceeEE
Q 007641 387 GKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAIS-AVMGTERLP---FPGIVFDAV 457 (595)
Q Consensus 387 ~~~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~~~~-~v~d~~~LP---fpd~sFDlV 457 (595)
+.++.||||+.+..|.=+.+++.. -|++.|....-+..- .+.+.+.|+...+ ...+...+| |+. +||-|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l-~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSL-KANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHH-HHHHHHhCCCceEEEccCcccccccccCc-cccee
Confidence 457899999999999766666552 567888765433222 2334455766443 444554444 554 89999
Q ss_pred Eecc-c---Cccccc----------------C-HHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHH-HHHHHHHHHc
Q 007641 458 HCAR-C---RVPWHI----------------E-GGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIW-NAMSQLIKAM 515 (595)
Q Consensus 458 ~~~~-c---~v~~h~----------------d-~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w-~~le~Lak~~ 515 (595)
+.-. | .+.+-. . ..++|..+..+++|||+|+.++-.+.-. .. ..+..++++.
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~------ENE~vV~yaL~K~ 390 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVE------ENEAVVDYALKKR 390 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchh------hhHHHHHHHHHhC
Confidence 8422 2 122111 0 1378888999999999999885433221 12 2333345555
Q ss_pred -CCEEEEEee
Q 007641 516 -CWELVSISK 524 (595)
Q Consensus 516 -Gw~~v~~~~ 524 (595)
+++++....
T Consensus 391 p~~kL~p~~~ 400 (460)
T KOG1122|consen 391 PEVKLVPTGL 400 (460)
T ss_pred CceEeccccc
Confidence 676665543
No 259
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.07 E-value=0.12 Score=52.70 Aligned_cols=96 Identities=13% Similarity=0.208 Sum_probs=60.3
Q ss_pred cCchHHHHHHHHHhcccccC--CCCCCEEEEECCCCchhHHHH----hhCCcEEEeCCchhHHHHHHHHHHHcCCCeeE-
Q 007641 367 KNGALHYIDFIQESVPDVAW--GKRTRVVLDVGCGVASFGGFL----FDRGVLTMSFAPKDEHEAQVQFALERGIPAIS- 439 (595)
Q Consensus 367 ~~ga~~yid~L~~~L~~l~~--~~~~~rVLDIGCGtG~~a~~L----a~r~V~giDisp~di~~aqvq~A~ergi~~~~- 439 (595)
..++..|+++|..+|..-.. ..+..++||||.|.--+--.+ -...++|.||++..++.|+..+....++...+
T Consensus 54 vPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~ 133 (292)
T COG3129 54 VPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIR 133 (292)
T ss_pred CCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhhee
Confidence 46788999999998864322 124678999999876432222 22378999999988888876665543443211
Q ss_pred ee--cCCC----CCCCCCCceeEEEeccc
Q 007641 440 AV--MGTE----RLPFPGIVFDAVHCARC 462 (595)
Q Consensus 440 ~v--~d~~----~LPfpd~sFDlV~~~~c 462 (595)
.. -+.. .+--....||++.|+..
T Consensus 134 lr~qk~~~~if~giig~nE~yd~tlCNPP 162 (292)
T COG3129 134 LRRQKDSDAIFNGIIGKNERYDATLCNPP 162 (292)
T ss_pred EEeccCccccccccccccceeeeEecCCC
Confidence 11 1111 11122467999999973
No 260
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=93.78 E-value=0.15 Score=51.25 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=24.9
Q ss_pred CCEEEEECCCCchhHHHHhhC----CcEEEeCCc
Q 007641 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAP 419 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r----~V~giDisp 419 (595)
.-.+.|||||.|.++..|+.. -|+|++|--
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~ 94 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRD 94 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhH
Confidence 346899999999999999885 688888853
No 261
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=93.72 E-value=0.27 Score=48.84 Aligned_cols=92 Identities=23% Similarity=0.288 Sum_probs=55.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCCeeEe--ecCC---CC--CCCCCCcee
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISA--VMGT---ER--LPFPGIVFD 455 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~~~~~--v~d~---~~--LPfpd~sFD 455 (595)
+++.+|||+||..|+++.-..++ .|.|+||-+.. --.|...+.. +.+. .. -.+|+...|
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~---------p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~Vd 138 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE---------PPEGATIIQGNDVTDPETYRKIFEALPNRPVD 138 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc---------CCCCcccccccccCCHHHHHHHHHhCCCCccc
Confidence 46899999999999999877775 58899885321 1122221111 0010 00 124678899
Q ss_pred EEEecccCccccc-----CHH-------HHHHHHHHhccCCcEEEEE
Q 007641 456 AVHCARCRVPWHI-----EGG-------KLLLELNRVLRPGGFFIWS 490 (595)
Q Consensus 456 lV~~~~c~v~~h~-----d~~-------~lL~El~RvLKPGG~Lvis 490 (595)
+|++-. .+... |.. .+|.-....|+|+|.|+.-
T Consensus 139 vVlSDM--apnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK 183 (232)
T KOG4589|consen 139 VVLSDM--APNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK 183 (232)
T ss_pred EEEecc--CCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE
Confidence 999864 22211 211 3444455678899999975
No 262
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=93.51 E-value=0.83 Score=50.10 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=15.3
Q ss_pred CCEEEEECCCCchhHHHHh
Q 007641 390 TRVVLDVGCGVASFGGFLF 408 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La 408 (595)
..+|+|+|||+|.++..+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~v 82 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHII 82 (386)
T ss_pred ceeEEEecCCCCccHHHHH
Confidence 5689999999997765553
No 263
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=93.51 E-value=0.73 Score=47.48 Aligned_cols=129 Identities=16% Similarity=0.152 Sum_probs=76.7
Q ss_pred CCCCCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCC----CCCCceeE
Q 007641 386 WGKRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP----FPGIVFDA 456 (595)
Q Consensus 386 ~~~~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LP----fpd~sFDl 456 (595)
|-+++.+||=+|++.|....++.+- -|+++++++..-. ..+..|+.| .+++-++.|+. .| +.-.-.|+
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGR-dL~nmAkkR-tNiiPIiEDAr-hP~KYRmlVgmVDv 229 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGR-DLINMAKKR-TNIIPIIEDAR-HPAKYRMLVGMVDV 229 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchH-HHHHHhhcc-CCceeeeccCC-CchheeeeeeeEEE
Confidence 3457899999999999988888773 6899999876432 234555555 23344444432 22 11234677
Q ss_pred EEecccCcccccCHHHHHHHHHHhccCCcEEEEEeC-CCCCcCchhHHHHHHHHHHHHHcCCEEE
Q 007641 457 VHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT-PVYQKLPEDVEIWNAMSQLIKAMCWELV 520 (595)
Q Consensus 457 V~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p-p~~~~l~e~i~~w~~le~Lak~~Gw~~v 520 (595)
|++. +........+..++.-.||+||.|+|+.. +..+.....-..|..-.+.|+.--++..
T Consensus 230 IFaD---vaqpdq~RivaLNA~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqee~lkP~ 291 (317)
T KOG1596|consen 230 IFAD---VAQPDQARIVALNAQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQEEQLKPK 291 (317)
T ss_pred Eecc---CCCchhhhhhhhhhhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHhccCch
Confidence 7764 22222235667788999999999999853 2333222222334444444555444443
No 264
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=93.16 E-value=0.11 Score=51.55 Aligned_cols=90 Identities=19% Similarity=0.161 Sum_probs=60.7
Q ss_pred CCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHc----CC-CeeEeecCCCCCCCCCCceeEEEeccc
Q 007641 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALER----GI-PAISAVMGTERLPFPGIVFDAVHCARC 462 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~er----gi-~~~~~v~d~~~LPfpd~sFDlV~~~~c 462 (595)
...+.|+|+|+|.++...+.+ .|++++.+|.-. +.|.+. |. ...+...|+....| ...|+|+|-.
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a-----~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEm- 104 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRA-----RLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEM- 104 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHH-----HHhhhcCCCCCCcceEEEecccccccc--cccceeHHHH-
Confidence 358999999999877666553 799999998632 333333 22 34456667777777 4579999854
Q ss_pred Ccccc---cCHHHHHHHHHHhccCCcEEE
Q 007641 463 RVPWH---IEGGKLLLELNRVLRPGGFFI 488 (595)
Q Consensus 463 ~v~~h---~d~~~lL~El~RvLKPGG~Lv 488 (595)
+--. .....++..+...||-.+.++
T Consensus 105 -lDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 105 -LDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred -hhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 1111 122467777777889988887
No 265
>PRK11524 putative methyltransferase; Provisional
Probab=93.12 E-value=0.27 Score=51.37 Aligned_cols=44 Identities=16% Similarity=0.068 Sum_probs=31.8
Q ss_pred CCCCCceeEEEecccCccc----cc----C-------HHHHHHHHHHhccCCcEEEEEe
Q 007641 448 PFPGIVFDAVHCARCRVPW----HI----E-------GGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 448 Pfpd~sFDlV~~~~c~v~~----h~----d-------~~~lL~El~RvLKPGG~Lvis~ 491 (595)
.+++++||+|++..++..- .. . ...+|.++.|+|||||.|+|..
T Consensus 22 ~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 22 KIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred hcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 3567899999998654220 00 0 1368899999999999999864
No 266
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=92.97 E-value=1.8 Score=44.79 Aligned_cols=101 Identities=19% Similarity=0.110 Sum_probs=55.5
Q ss_pred CCEEEEECCCCchhHHHHhh---CCcEEEeCCchhHHHHHH----HHH-HHcCCCeeE--eecCC-CCCCCCCCc-eeEE
Q 007641 390 TRVVLDVGCGVASFGGFLFD---RGVLTMSFAPKDEHEAQV----QFA-LERGIPAIS--AVMGT-ERLPFPGIV-FDAV 457 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~---r~V~giDisp~di~~aqv----q~A-~ergi~~~~--~v~d~-~~LPfpd~s-FDlV 457 (595)
..+||++|.|+|..+..++- ..|+..|+.......... +.+ ...|..+.. .+.+. ...-+-... ||+|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 56899999999976655444 366666665432211111 111 122323322 22221 111111112 9999
Q ss_pred EecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 458 ~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
+++.|++..+ ....++.-+..+|-.+|.+++..
T Consensus 167 lasDvvy~~~-~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 167 LASDVVYEEE-SFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred EEeeeeecCC-cchhHHHHHHHHHhcCCeEEEEE
Confidence 9998644322 45788888888999999555553
No 267
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=92.84 E-value=0.53 Score=50.58 Aligned_cols=78 Identities=15% Similarity=0.151 Sum_probs=38.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC--------------------CcEEEeCCchhHHHHHHHHHHH-----cCCCe-eEeec
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR--------------------GVLTMSFAPKDEHEAQVQFALE-----RGIPA-ISAVM 442 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r--------------------~V~giDisp~di~~aqvq~A~e-----rgi~~-~~~v~ 442 (595)
..-+|+|+||..|..+..+... .|.--|+-.+|...-....... ...++ ...+.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 4568999999999877665441 2444577666654332221111 11222 22233
Q ss_pred C-CCCCCCCCCceeEEEecccCcccc
Q 007641 443 G-TERLPFPGIVFDAVHCARCRVPWH 467 (595)
Q Consensus 443 d-~~~LPfpd~sFDlV~~~~c~v~~h 467 (595)
+ ...-=||+++.|++|++. .+||.
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~-alHWL 120 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSY-ALHWL 120 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES--TTB-
T ss_pred chhhhccCCCCceEEEEEec-hhhhc
Confidence 3 233347899999999986 35663
No 268
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=92.56 E-value=0.74 Score=48.07 Aligned_cols=101 Identities=17% Similarity=0.157 Sum_probs=49.8
Q ss_pred CCCEEEEECCCCc--hhHHHHhh-----CCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCC-------------CC
Q 007641 389 RTRVVLDVGCGVA--SFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER-------------LP 448 (595)
Q Consensus 389 ~~~rVLDIGCGtG--~~a~~La~-----r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~-------------LP 448 (595)
..+..||||||.- ...-.+++ ..|+=+|.+|.-+..++.-.+....-...+...|..+ |.
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 4789999999944 23444544 3799999998765444322222211113444444321 11
Q ss_pred CCCCceeEEEecccCccccc---CHHHHHHHHHHhccCCcEEEEEeC
Q 007641 449 FPGIVFDAVHCARCRVPWHI---EGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 449 fpd~sFDlV~~~~c~v~~h~---d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
| +...=++++. .+++.. ++..++..+...|.||.||+|+..
T Consensus 148 ~-~rPVavll~~--vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 148 F-DRPVAVLLVA--VLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp T-TS--EEEECT---GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred C-CCCeeeeeee--eeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 1 2333344432 233332 458999999999999999999953
No 269
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=92.07 E-value=2.1 Score=46.55 Aligned_cols=116 Identities=20% Similarity=0.206 Sum_probs=65.8
Q ss_pred HHHHHhcccccC-CCCCCEEEEECCCCchhHHHHhhC--------CcEEEeCCchhHHHHHHHHHHHcC-CCe-eEeecC
Q 007641 375 DFIQESVPDVAW-GKRTRVVLDVGCGVASFGGFLFDR--------GVLTMSFAPKDEHEAQVQFALERG-IPA-ISAVMG 443 (595)
Q Consensus 375 d~L~~~L~~l~~-~~~~~rVLDIGCGtG~~a~~La~r--------~V~giDisp~di~~aqvq~A~erg-i~~-~~~v~d 443 (595)
.....++|.+.. -.++.+|||+.+..|+-++.|++. .|++=|+++.-++ ++.....+- .+. .+...+
T Consensus 140 qeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~--~L~~q~~~l~~~~~~v~~~~ 217 (375)
T KOG2198|consen 140 QEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLN--MLVHQLKRLPSPNLLVTNHD 217 (375)
T ss_pred hhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHH--HHHHHHhccCCcceeeeccc
Confidence 334455554433 357899999999999988777762 4667777755332 222222331 111 111122
Q ss_pred CCCC---------CCCCCceeEEEecc-cC---ccccc-C-----------------HHHHHHHHHHhccCCcEEEEEeC
Q 007641 444 TERL---------PFPGIVFDAVHCAR-CR---VPWHI-E-----------------GGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 444 ~~~L---------Pfpd~sFDlV~~~~-c~---v~~h~-d-----------------~~~lL~El~RvLKPGG~Lvis~p 492 (595)
+... +...-.||-|+|-- |. .+.+. + ...+|+.-.|+||+||.+|.++-
T Consensus 218 ~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTC 297 (375)
T KOG2198|consen 218 ASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTC 297 (375)
T ss_pred ceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 1111 22334699999732 21 00000 0 02678889999999999998854
No 270
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=91.74 E-value=0.08 Score=48.04 Aligned_cols=40 Identities=28% Similarity=0.772 Sum_probs=27.9
Q ss_pred ceeEEEecccCccc-cc---CH--HHHHHHHHHhccCCcEEEEEeCC
Q 007641 453 VFDAVHCARCRVPW-HI---EG--GKLLLELNRVLRPGGFFIWSATP 493 (595)
Q Consensus 453 sFDlV~~~~c~v~~-h~---d~--~~lL~El~RvLKPGG~Lvis~pp 493 (595)
.||+|+|.. ..-| |+ |. ..+++.++++|+|||+||+--.|
T Consensus 1 ~yDvilclS-VtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~ 46 (110)
T PF06859_consen 1 QYDVILCLS-VTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQP 46 (110)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---
T ss_pred CccEEEEEE-eeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 499999974 2333 33 22 47999999999999999998544
No 271
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=91.60 E-value=1.3 Score=50.11 Aligned_cols=117 Identities=18% Similarity=0.104 Sum_probs=72.9
Q ss_pred HHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhh--------CCcEEEeCCchhHHHHHHHHHHHcCCC--eeEee
Q 007641 372 HYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFD--------RGVLTMSFAPKDEHEAQVQFALERGIP--AISAV 441 (595)
Q Consensus 372 ~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~--------r~V~giDisp~di~~aqvq~A~ergi~--~~~~v 441 (595)
.....|.+++.. .+..+|+|..||+|.+.....+ ..++|.++.+.....+..+.... ++. +....
T Consensus 173 ~v~~liv~~l~~----~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lh-gi~~~~~i~~ 247 (489)
T COG0286 173 EVSELIVELLDP----EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILH-GIEGDANIRH 247 (489)
T ss_pred HHHHHHHHHcCC----CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHh-CCCccccccc
Confidence 345555555542 3466999999999986644433 23788898877666665554443 333 33444
Q ss_pred cCCCCCCC-----CCCceeEEEecccCc--cccc---------------------CH-HHHHHHHHHhccCCcEEEEEeC
Q 007641 442 MGTERLPF-----PGIVFDAVHCARCRV--PWHI---------------------EG-GKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 442 ~d~~~LPf-----pd~sFDlV~~~~c~v--~~h~---------------------d~-~~lL~El~RvLKPGG~Lvis~p 492 (595)
.+...-|. ....||+|+++..+. .|.. .. ..++..+.+.|+|||+..|..+
T Consensus 248 ~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 248 GDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred cccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 44333332 336799999987543 1110 01 3789999999999997777665
Q ss_pred C
Q 007641 493 P 493 (595)
Q Consensus 493 p 493 (595)
.
T Consensus 328 ~ 328 (489)
T COG0286 328 D 328 (489)
T ss_pred C
Confidence 4
No 272
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=91.44 E-value=0.51 Score=48.76 Aligned_cols=129 Identities=18% Similarity=0.141 Sum_probs=69.5
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCc
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v 464 (595)
...+|||||||.=-++..+... .++|+||+...+.... .+....+++....+.|...-+ +....|+++..- +
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~-~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK--~ 180 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLN-AFLAVLGVPHDARVRDLLSDP-PKEPADLALLLK--T 180 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHH-HHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET---
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHH-HHHHhhCCCcceeEeeeeccC-CCCCcchhhHHH--H
Confidence 4789999999999888877663 6899999977654432 344455777666776653332 345789998764 2
Q ss_pred ccccCH--HHHHHHHHHhccCCcEEEEEeCCCC-CcCchhHH--HHHHHHHHHHHcCCEEEEE
Q 007641 465 PWHIEG--GKLLLELNRVLRPGGFFIWSATPVY-QKLPEDVE--IWNAMSQLIKAMCWELVSI 522 (595)
Q Consensus 465 ~~h~d~--~~lL~El~RvLKPGG~Lvis~pp~~-~~l~e~i~--~w~~le~Lak~~Gw~~v~~ 522 (595)
...++. .....++...|+ .=+++|+-|..- ..-..... .-..|+.++..-+|.+-..
T Consensus 181 lp~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~~ 242 (251)
T PF07091_consen 181 LPCLERQRRGAGLELLDALR-SPHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDRL 242 (251)
T ss_dssp HHHHHHHSTTHHHHHHHHSC-ESEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEEE
T ss_pred HHHHHHHhcchHHHHHHHhC-CCeEEEeccccccccCccccccCHHHHHHHhcccCCceeeee
Confidence 222222 122222333333 224555543211 11111111 2267788888889984433
No 273
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=91.41 E-value=0.92 Score=47.92 Aligned_cols=92 Identities=13% Similarity=0.130 Sum_probs=55.7
Q ss_pred CCCEEEEECCC-CchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecC--CCCCCCCCCceeEEEecc
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMG--TERLPFPGIVFDAVHCAR 461 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d--~~~LPfpd~sFDlV~~~~ 461 (595)
++.+||=+||| .|.++..+++. .|++++.++ ...+++++.|...++.... ...+....+.||+|+-.-
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~-----~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~ 243 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSP-----RSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVS 243 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCH-----HHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECC
Confidence 47789989875 34455555552 467777764 3456777777654332111 111111123589888632
Q ss_pred cCcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 462 CRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 462 c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
.....+..+.++|||||.+++...
T Consensus 244 -------G~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 244 -------GHPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred -------CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 123567888999999999998753
No 274
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=90.55 E-value=1.2 Score=51.75 Aligned_cols=56 Identities=16% Similarity=0.126 Sum_probs=39.7
Q ss_pred CceeEEEecccCcccccCH----HHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEE
Q 007641 452 IVFDAVHCARCRVPWHIEG----GKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVS 521 (595)
Q Consensus 452 ~sFDlV~~~~c~v~~h~d~----~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~ 521 (595)
..||+|+.-. +.+ ..++ ..+|..|.|+++|||.|+-... -..+..-|..+||.+-.
T Consensus 165 ~~~d~~~lD~-FsP-~~np~~W~~~~~~~l~~~~~~~~~~~t~t~------------a~~vr~~l~~~GF~v~~ 224 (662)
T PRK01747 165 ARADAWFLDG-FAP-AKNPDMWSPNLFNALARLARPGATLATFTS------------AGFVRRGLQEAGFTVRK 224 (662)
T ss_pred ccccEEEeCC-CCC-ccChhhccHHHHHHHHHHhCCCCEEEEeeh------------HHHHHHHHHHcCCeeee
Confidence 5699999864 333 2233 6999999999999999984321 24666778888887653
No 275
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=90.54 E-value=1.3 Score=45.80 Aligned_cols=91 Identities=15% Similarity=0.214 Sum_probs=55.6
Q ss_pred CCCEEEEECCC-CchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCC---CC-CCCCCceeEEEec
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTE---RL-PFPGIVFDAVHCA 460 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~---~L-Pfpd~sFDlV~~~ 460 (595)
++.+||..|+| .|..+..++++ .|++++.++ .+..+++..++..++...... .+ ....+.+|+|+..
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~ 239 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKE-----EKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDF 239 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCH-----HHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEEC
Confidence 46788888876 46666667663 566666653 344555556654332221110 00 1234569988853
Q ss_pred ccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 461 RCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 461 ~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
. .....+.++.++|+++|.|+...
T Consensus 240 ~-------g~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 240 V-------GTQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred C-------CCHHHHHHHHHHhhcCCEEEEEC
Confidence 2 12367888999999999999764
No 276
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=90.54 E-value=0.28 Score=47.58 Aligned_cols=70 Identities=14% Similarity=0.230 Sum_probs=44.2
Q ss_pred CCceeEEEecccCccccc---------CH---HHHHHHHHHhccCCcEEEEEeCCCCCcCchhH-HHHHHHHHHHHHcCC
Q 007641 451 GIVFDAVHCARCRVPWHI---------EG---GKLLLELNRVLRPGGFFIWSATPVYQKLPEDV-EIWNAMSQLIKAMCW 517 (595)
Q Consensus 451 d~sFDlV~~~~c~v~~h~---------d~---~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i-~~w~~le~Lak~~Gw 517 (595)
.++||.+.|.. ...|. ++ ...+.++.++|||||.|++..|---+.+.-+. +.+..+.-.+--.||
T Consensus 61 ~~~fD~~as~~--siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gf 138 (177)
T PF03269_consen 61 AGSFDFAASFS--SIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGF 138 (177)
T ss_pred hccchhhheec--hhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCc
Confidence 36799988864 22332 22 48889999999999999999874333222221 234444444556788
Q ss_pred EEEEE
Q 007641 518 ELVSI 522 (595)
Q Consensus 518 ~~v~~ 522 (595)
+.+..
T Consensus 139 e~i~t 143 (177)
T PF03269_consen 139 EWIDT 143 (177)
T ss_pred EEEee
Confidence 86654
No 277
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=90.44 E-value=1 Score=48.55 Aligned_cols=98 Identities=20% Similarity=0.177 Sum_probs=58.0
Q ss_pred CCCEEEEECCCC-chhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHc-CCCeeEeecC--C-CCC-CC-CCCceeEE
Q 007641 389 RTRVVLDVGCGV-ASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER-GIPAISAVMG--T-ERL-PF-PGIVFDAV 457 (595)
Q Consensus 389 ~~~rVLDIGCGt-G~~a~~La~r----~V~giDisp~di~~aqvq~A~er-gi~~~~~v~d--~-~~L-Pf-pd~sFDlV 457 (595)
++.+||.+|||. |.++..++++ .|++++.++ .+.+++++. +..++..... . ..+ .+ ....+|+|
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~-----~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~v 258 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVP-----ERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVC 258 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCH-----HHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEE
Confidence 578999999986 7777777763 367777764 345556655 3321111110 0 001 12 22368988
Q ss_pred EecccC--------------cccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 458 HCARCR--------------VPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 458 ~~~~c~--------------v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
+-.-.. +..+.+....+.++.++|+|+|.+++..
T Consensus 259 ld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 259 IDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred EECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 763100 0011234678999999999999999875
No 278
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=90.39 E-value=0.11 Score=54.40 Aligned_cols=127 Identities=18% Similarity=0.299 Sum_probs=61.9
Q ss_pred chHHHHHHHHHhc-ccccCCCCCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhH------------HHHHHHHHHH
Q 007641 369 GALHYIDFIQESV-PDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDE------------HEAQVQFALE 432 (595)
Q Consensus 369 ga~~yid~L~~~L-~~l~~~~~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di------------~~aqvq~A~e 432 (595)
......+.+.+.+ ..+. ..+.+|||+|||.|..+...... .+...|++..-+ +... +....
T Consensus 97 cS~dl~~~l~~e~~~~~~--~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~-~~~e~ 173 (282)
T KOG2920|consen 97 CSVDLLPYLKEEIGAQMS--FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGV-EEKEN 173 (282)
T ss_pred cHHHHHHHHHHHhhhheE--ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhh-hhhhc
Confidence 3444455555443 2222 24789999999999877666554 345555543222 0000 00000
Q ss_pred cCCCeeEeec---CCCCCCCCC-CceeEEEecccCcccccCH-HHH-HHHHHHhccCCcEEEEEeCCCCCcCchhH
Q 007641 433 RGIPAISAVM---GTERLPFPG-IVFDAVHCARCRVPWHIEG-GKL-LLELNRVLRPGGFFIWSATPVYQKLPEDV 502 (595)
Q Consensus 433 rgi~~~~~v~---d~~~LPfpd-~sFDlV~~~~c~v~~h~d~-~~l-L~El~RvLKPGG~Lvis~pp~~~~l~e~i 502 (595)
.... .+... +. .+-+.. ..||+|.++. ..+.++. ..+ +....+++++.|.+++..-..|--....+
T Consensus 174 ~~~~-~i~~s~l~dg-~~~~t~~~~ydlIlsSe--tiy~~~~~~~~~~~~r~~l~~~D~~~~~aAK~~yFgVgg~i 245 (282)
T KOG2920|consen 174 HKVD-EILNSLLSDG-VFNHTERTHYDLILSSE--TIYSIDSLAVLYLLHRPCLLKTDGVFYVAAKKLYFGVGGGI 245 (282)
T ss_pred ccce-eccccccccc-hhhhccccchhhhhhhh--hhhCcchhhhhHhhhhhhcCCccchhhhhhHhhccCcCcch
Confidence 0000 00000 00 010111 1578887765 3333333 223 55677788999998877554444444433
No 279
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=90.34 E-value=1.6 Score=49.63 Aligned_cols=98 Identities=17% Similarity=0.129 Sum_probs=59.6
Q ss_pred CCCCEEEEECCCCc-hhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCC---------CC--C----
Q 007641 388 KRTRVVLDVGCGVA-SFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTE---------RL--P---- 448 (595)
Q Consensus 388 ~~~~rVLDIGCGtG-~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~---------~L--P---- 448 (595)
.++.+||=+|||.- ..+...+.+ .|+++|+.+. ..+.+++.|........... .+ .
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~-----rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~ 237 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE-----VAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKA 237 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHcCCeEEEeccccccccccchhhhcchhHHHH
Confidence 36889999999954 455555542 6888888743 44566666655322211000 00 0
Q ss_pred ----CCC--CceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 449 ----FPG--IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 449 ----fpd--~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
|.. +.+|+|+..- .++....+..+.+++.+.+||||.++...
T Consensus 238 ~~~~~~~~~~gaDVVIeta-g~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 238 EMALFAEQAKEVDIIITTA-LIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHHhccCCCCEEEECC-CCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 111 3599999853 22222234444699999999999998764
No 280
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=89.28 E-value=2.1 Score=45.12 Aligned_cols=168 Identities=18% Similarity=0.194 Sum_probs=99.1
Q ss_pred CCCEEEEECCCCchhHHHH--hh--CCcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCCCCCCC---CceeEEEec
Q 007641 389 RTRVVLDVGCGVASFGGFL--FD--RGVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERLPFPG---IVFDAVHCA 460 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~L--a~--r~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~LPfpd---~sFDlV~~~ 460 (595)
.++.||=+| -.-.++.++ -. ..|..+||+...+.-- .++|.+.|+. +..++.|. +-|||. +.||+++.-
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi-~k~aee~g~~~ie~~~~Dl-r~plpe~~~~kFDvfiTD 228 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFI-EKVAEELGYNNIEAFVFDL-RNPLPEDLKRKFDVFITD 228 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHH-HHHHHHhCccchhheeehh-cccChHHHHhhCCeeecC
Confidence 467899998 333343333 33 3799999997765433 3567788887 44555544 334543 689999886
Q ss_pred ccCcccccC-HHHHHHHHHHhccCC---cEEEEEeCCCCCcCchhHHHHHHHHH-HHHHcCCEEEEEeecccCceEEEEE
Q 007641 461 RCRVPWHIE-GGKLLLELNRVLRPG---GFFIWSATPVYQKLPEDVEIWNAMSQ-LIKAMCWELVSISKDTINKVGIAVY 535 (595)
Q Consensus 461 ~c~v~~h~d-~~~lL~El~RvLKPG---G~Lvis~pp~~~~l~e~i~~w~~le~-Lak~~Gw~~v~~~~~~l~~~giaI~ 535 (595)
. +.... ...+|..=...||-- |||.|+. ....+..|..+++ +...+||-+....... ..|
T Consensus 229 P---peTi~alk~FlgRGI~tLkg~~~aGyfgiT~------ressidkW~eiQr~lIn~~gvVITdiirnF------N~Y 293 (354)
T COG1568 229 P---PETIKALKLFLGRGIATLKGEGCAGYFGITR------RESSIDKWREIQRILINEMGVVITDIIRNF------NEY 293 (354)
T ss_pred c---hhhHHHHHHHHhccHHHhcCCCccceEeeee------ccccHHHHHHHHHHHHHhcCeeeHhhhhhh------hcc
Confidence 5 23333 255666555666655 8998874 2345678999999 8999998766554432 222
Q ss_pred EeCCChhHHhhhcCCCCCCcCCCCCCCCccccccccccccCCcc
Q 007641 536 RKPTSNECYEKRSQQQPPVCLGSDDPNAAWHVPLQACMHKVPEE 579 (595)
Q Consensus 536 ~KP~~~~Cy~~r~~~~p~lC~~~~d~d~aWY~~L~~Ci~~~p~~ 579 (595)
..-.. ....+..+-++. ...+..-||....-.|..++..
T Consensus 294 ~nwey--~~et~a~~l~pv---Kklpe~iwy~s~~frIetlk~~ 332 (354)
T COG1568 294 VNWEY--IEETRAWKLAPV---KKLPEDIWYKSYMFRIETLKGS 332 (354)
T ss_pred ccccc--chhhhhhhhccc---ccCchhhhhhhheeeeeeeccc
Confidence 11110 001111112222 1233567998877777766654
No 281
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=88.49 E-value=5.3 Score=41.59 Aligned_cols=124 Identities=12% Similarity=0.126 Sum_probs=67.1
Q ss_pred EEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCC--CCceeEEEecccCccc
Q 007641 392 VVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFP--GIVFDAVHCARCRVPW 466 (595)
Q Consensus 392 rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfp--d~sFDlV~~~~c~v~~ 466 (595)
+|||+-||.|.+..-|.+. .|.++|+++..+...+. ..+......|...+... ...+|+|+...+.-.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~------N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~f 75 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEA------NFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPF 75 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHH------hCCCCCccCccccCchhhcCCCCCEEEeCCCChhh
Confidence 6999999999997777764 46888998754322221 11222334444443211 2469999987521111
Q ss_pred cc--------CH-HHHHHHHH---HhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEEe
Q 007641 467 HI--------EG-GKLLLELN---RVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSIS 523 (595)
Q Consensus 467 h~--------d~-~~lL~El~---RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~~ 523 (595)
.. +. ..++.++. +.++|. +|++-..+-+... ..-..+..+...++.+||.+....
T Consensus 76 S~ag~~~~~~d~r~~L~~~~~~~i~~~~P~-~~v~ENV~g~~~~-~~~~~~~~i~~~l~~~GY~~~~~~ 142 (275)
T cd00315 76 SIAGKRKGFEDTRGTLFFEIIRILKEKKPK-YFLLENVKGLLTH-DNGNTLKVILNTLEELGYNVYWKL 142 (275)
T ss_pred hHHhhcCCCCCchHHHHHHHHHHHHhcCCC-EEEEEcCcchhcc-CchHHHHHHHHHHHhCCcEEEEEE
Confidence 11 11 23444444 445676 3333322211111 122457788888899998864443
No 282
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=87.25 E-value=1.3 Score=50.08 Aligned_cols=97 Identities=14% Similarity=0.093 Sum_probs=64.8
Q ss_pred CCEEEEECCCCchhHHHHhh------C--CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecc
Q 007641 390 TRVVLDVGCGVASFGGFLFD------R--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCAR 461 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~------r--~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~ 461 (595)
.-+|+=+|+|.|-++...++ + .+++++-.|..+.--+...-....-.+.++..|+...+-|....|++++-.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL 447 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSEL 447 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHh
Confidence 45788999999987755544 2 678999888765433321111223345566667777765557899999743
Q ss_pred cCcccccCH---HHHHHHHHHhccCCcEEE
Q 007641 462 CRVPWHIEG---GKLLLELNRVLRPGGFFI 488 (595)
Q Consensus 462 c~v~~h~d~---~~lL~El~RvLKPGG~Lv 488 (595)
+--..+. ...|..+.+.|||.|+.|
T Consensus 448 --LGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 448 --LGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred --hccccCccCCHHHHHHHHhhcCCCceEc
Confidence 2222222 689999999999999877
No 283
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=87.08 E-value=0.82 Score=41.58 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCchhHHHHhhCCcEEEeCC
Q 007641 389 RTRVVLDVGCGVASFGGFLFDRGVLTMSFA 418 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r~V~giDis 418 (595)
+....+|||||.|.+.--|..-+..|..|+
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD 87 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPGWGID 87 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCccccc
Confidence 456799999999988877777777666665
No 284
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=86.65 E-value=2.4 Score=41.21 Aligned_cols=51 Identities=22% Similarity=0.227 Sum_probs=31.7
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcC-CEEEEEeecccCceEEEEEEeC
Q 007641 471 GKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMC-WELVSISKDTINKVGIAVYRKP 538 (595)
Q Consensus 471 ~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~G-w~~v~~~~~~l~~~giaI~~KP 538 (595)
..+|.+++|+|||||.++|......... ..+..++...| |..... .||.|+
T Consensus 36 ~~~~~~~~rvLk~~g~~~i~~~~~~~~~-------~~~~~~~~~~g~~~~~~~----------iiW~K~ 87 (231)
T PF01555_consen 36 EEWLKECYRVLKPGGSIFIFIDDREIAG-------FLFELALEIFGGFFLRNE----------IIWNKP 87 (231)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE-CCEECT-------HHHHHHHHHHTT-EEEEE----------EEEE-S
T ss_pred HHHHHHHHhhcCCCeeEEEEecchhhhH-------HHHHHHHHHhhhhheecc----------ceeEec
Confidence 4789999999999999998865322221 12334455556 776543 577776
No 285
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=86.54 E-value=4.3 Score=42.81 Aligned_cols=88 Identities=19% Similarity=0.128 Sum_probs=54.0
Q ss_pred CCCCEEEEECCC-CchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccC
Q 007641 388 KRTRVVLDVGCG-VASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCR 463 (595)
Q Consensus 388 ~~~~rVLDIGCG-tG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~ 463 (595)
.++.+||=+|+| .|.++..+++. .|++++.++ ...+++++.|...++... .. ....||+++-..+
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~-----~~~~~a~~~Ga~~vi~~~---~~--~~~~~d~~i~~~~- 232 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGA-----AARRLALALGAASAGGAY---DT--PPEPLDAAILFAP- 232 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCCh-----HHHHHHHHhCCceecccc---cc--CcccceEEEECCC-
Confidence 357899999975 33444555552 466666653 345677777765433211 11 1235887654321
Q ss_pred cccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 464 VPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 464 v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
....+....++|++||++++...
T Consensus 233 ------~~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 233 ------AGGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ------cHHHHHHHHHhhCCCcEEEEEec
Confidence 12478889999999999998753
No 286
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=86.51 E-value=3.7 Score=41.42 Aligned_cols=101 Identities=10% Similarity=0.005 Sum_probs=48.8
Q ss_pred CCCEEEEECCCCchhHHHHhh--------CCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCC----CC----CCC
Q 007641 389 RTRVVLDVGCGVASFGGFLFD--------RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL----PF----PGI 452 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~--------r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~L----Pf----pd~ 452 (595)
+..+|+++|.-.|..+.+++. ..|+|+||..........+. .-....+.+..++.... +. ...
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~-hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIES-HPMSPRITFIQGDSIDPEIVDQVRELASPP 110 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhh-ccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence 357999999999877766654 38999999654332221110 00012234444442211 10 112
Q ss_pred ceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 453 VFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 453 sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
.-.+|+--. -|.|.+....|.....+|.||+|+|+..+
T Consensus 111 ~~vlVilDs--~H~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 111 HPVLVILDS--SHTHEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp SSEEEEESS------SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred CceEEEECC--CccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 345666533 34455677888889999999999998643
No 287
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=86.44 E-value=1.3 Score=45.38 Aligned_cols=88 Identities=23% Similarity=0.303 Sum_probs=55.6
Q ss_pred CCEEEEECCCCchhHHHHhhC-------------CcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecCCCCC--------
Q 007641 390 TRVVLDVGCGVASFGGFLFDR-------------GVLTMSFAPKDEHEAQVQFALERGIP-AISAVMGTERL-------- 447 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r-------------~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d~~~L-------- 447 (595)
..||+|+.+..|+++..|.++ .|+++|+.+.. .++ ++....|+...
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma------------PI~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA------------PIEGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC------------ccCceEEeecccCCHhHHHHHHH
Confidence 578999999999999888763 38889886531 111 22333332211
Q ss_pred CCCCCceeEEEecccC-c--ccccCH-------HHHHHHHHHhccCCcEEEE
Q 007641 448 PFPGIVFDAVHCARCR-V--PWHIEG-------GKLLLELNRVLRPGGFFIW 489 (595)
Q Consensus 448 Pfpd~sFDlV~~~~c~-v--~~h~d~-------~~lL~El~RvLKPGG~Lvi 489 (595)
.|....-|+|+|-..- + +|.++. ..+|.-..++|||||.|+-
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 2555578999996511 1 111221 2455667799999999984
No 288
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=85.72 E-value=3.7 Score=44.11 Aligned_cols=92 Identities=24% Similarity=0.235 Sum_probs=59.0
Q ss_pred CCEEEEECCC-CchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHc-CCCeeEeecCC----CCCCCCC-CceeEEE
Q 007641 390 TRVVLDVGCG-VASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALER-GIPAISAVMGT----ERLPFPG-IVFDAVH 458 (595)
Q Consensus 390 ~~rVLDIGCG-tG~~a~~La~r----~V~giDisp~di~~aqvq~A~er-gi~~~~~v~d~----~~LPfpd-~sFDlV~ 458 (595)
+.+||=+||| .|.++..+++. .|+++|+++ .++++|++. +.......... ..+.... ..||+|+
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~-----~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP-----ERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH-----HHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEE
Confidence 4499999999 56666666663 788888884 456677663 33332222110 0011112 3699988
Q ss_pred ecccCcccccCHHHHHHHHHHhccCCcEEEEEeCC
Q 007641 459 CARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATP 493 (595)
Q Consensus 459 ~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp 493 (595)
=.-. ....+..+.+++||||.+++...+
T Consensus 244 e~~G-------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 244 EAVG-------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred ECCC-------CHHHHHHHHHHhcCCCEEEEEecc
Confidence 5421 335889999999999999988643
No 289
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=85.13 E-value=3.6 Score=43.58 Aligned_cols=93 Identities=18% Similarity=0.179 Sum_probs=55.3
Q ss_pred CCCEEEEECCC-CchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCC--CCCCCceeEEEeccc
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL--PFPGIVFDAVHCARC 462 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~L--Pfpd~sFDlV~~~~c 462 (595)
++.+||=+|+| .|.++..+++. .|++++.+. ......+++++.|...+ ......+ ......||+|+-.-
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~--~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~~- 246 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRD--PPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEAT- 246 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCC--CCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEECc-
Confidence 47789999986 35566666653 566666531 11344566777776432 1111110 00124589888642
Q ss_pred CcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 463 RVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 463 ~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
.....+..+.++|++||.+++...
T Consensus 247 ------g~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 247 ------GVPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred ------CCHHHHHHHHHHccCCcEEEEEec
Confidence 122478889999999999987753
No 290
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=85.04 E-value=6.7 Score=40.86 Aligned_cols=99 Identities=16% Similarity=0.217 Sum_probs=62.1
Q ss_pred CCEEEEECCCCchhHHHHhhC--------CcEEEeCCchhHHHHHHHHHHHc-CCCeeEeecCC----CCCCCCCCceeE
Q 007641 390 TRVVLDVGCGVASFGGFLFDR--------GVLTMSFAPKDEHEAQVQFALER-GIPAISAVMGT----ERLPFPGIVFDA 456 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r--------~V~giDisp~di~~aqvq~A~er-gi~~~~~v~d~----~~LPfpd~sFDl 456 (595)
...++|+|.|+-.-++.|++. .++.+|++...+.....+++.+. ++++.-...+. ..+| ...--+
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~--~~~~Rl 156 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP--RGGRRL 156 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--CCCeEE
Confidence 678999999999877777662 67899999877666555555444 44443333321 2233 222233
Q ss_pred EEecccCccccc---CHHHHHHHHHHhccCCcEEEEEe
Q 007641 457 VHCARCRVPWHI---EGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 457 V~~~~c~v~~h~---d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
++.... .+-.. +...+|..+..+|+||-+|++.+
T Consensus 157 ~~flGS-tlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 157 FVFLGS-TLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEecc-cccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 332221 12222 23689999999999999999874
No 291
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=84.15 E-value=0.73 Score=48.82 Aligned_cols=130 Identities=22% Similarity=0.281 Sum_probs=81.5
Q ss_pred cccchhhhcCc--eeecCCCCccccCchHHHHHHHHHhcccccCCCCCCEEEEECCCCchhHH-HHhh---CCcEEEeCC
Q 007641 345 GHQNWVKVTGE--YLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGG-FLFD---RGVLTMSFA 418 (595)
Q Consensus 345 ~~q~W~~~~g~--~~~Fpggg~~F~~ga~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~-~La~---r~V~giDis 418 (595)
+...|..+-.+ +..|..-.+||..+...-..++..+.. .+..|.|+=+|.|+|+. .|.. +.|.++++.
T Consensus 154 Gd~gWV~~v~NGI~~~~d~t~~MFS~GN~~EK~Rv~~~sc------~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwN 227 (351)
T KOG1227|consen 154 GDLGWVKHVQNGITQIWDPTKTMFSRGNIKEKKRVLNTSC------DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWN 227 (351)
T ss_pred ccccceeehhcCeEEEechhhhhhhcCcHHHHHHhhhccc------ccchhhhhhcccceEEeehhhccCccEEEEEecC
Confidence 44556655333 444555567787776554444544433 36899999999999988 5555 379999999
Q ss_pred chhHHHHHHHHHHHcCCC-eeEeecCCCCCCCCCCceeEEEecccCcccccCHHHHHHHHHHhccCCcE
Q 007641 419 PKDEHEAQVQFALERGIP-AISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGF 486 (595)
Q Consensus 419 p~di~~aqvq~A~ergi~-~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~ 486 (595)
|-.+ ++.++-+...++. ......+..+.+-+....|-|.... ++- -..-.--+..+|||.|-
T Consensus 228 p~sv-EaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGL--lPS---se~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 228 PWSV-EALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGL--LPS---SEQGWPTAIKALKPEGG 290 (351)
T ss_pred HHHH-HHHHHHHHhcchHHHHHhhhccccccCccccchheeecc--ccc---cccchHHHHHHhhhcCC
Confidence 8765 3333444433332 2234445667777888899998754 442 23444456778888665
No 292
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=83.94 E-value=2.1 Score=38.30 Aligned_cols=82 Identities=23% Similarity=0.270 Sum_probs=54.3
Q ss_pred CCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCC---CC--CCCCCceeEEEecccCcccccCH
Q 007641 399 GVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTE---RL--PFPGIVFDAVHCARCRVPWHIEG 470 (595)
Q Consensus 399 GtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~---~L--Pfpd~sFDlV~~~~c~v~~h~d~ 470 (595)
|.|.++..+++. .|++++.+ ....+++++.|....+...... .+ .++...+|+|+-.- ..
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~-----~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~-------g~ 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRS-----EEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCV-------GS 68 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESS-----HHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESS-------SS
T ss_pred ChHHHHHHHHHHcCCEEEEEECC-----HHHHHHHHhhcccccccccccccccccccccccccceEEEEec-------Cc
Confidence 457777777763 78888877 4456778888854433332210 11 12335799998632 22
Q ss_pred HHHHHHHHHhccCCcEEEEEeC
Q 007641 471 GKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 471 ~~lL~El~RvLKPGG~Lvis~p 492 (595)
...+.....+|+|||.+++..-
T Consensus 69 ~~~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 69 GDTLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp HHHHHHHHHHEEEEEEEEEESS
T ss_pred HHHHHHHHHHhccCCEEEEEEc
Confidence 5789999999999999999854
No 293
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.61 E-value=5.9 Score=42.61 Aligned_cols=92 Identities=15% Similarity=0.207 Sum_probs=59.0
Q ss_pred CCCCEEEEECCCC-chhHHHHhh----CCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCC---------CCCCCc
Q 007641 388 KRTRVVLDVGCGV-ASFGGFLFD----RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL---------PFPGIV 453 (595)
Q Consensus 388 ~~~~rVLDIGCGt-G~~a~~La~----r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~L---------Pfpd~s 453 (595)
+.+.+||=+|+|. |..+...++ .+|+.+|+++. +++.|++.|..++........+ -+-...
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~-----Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~ 242 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVAN-----RLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQ 242 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHH-----HHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccC
Confidence 3588999999994 555555555 38999999854 5667777776655443321101 122234
Q ss_pred eeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 454 FDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 454 FDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
||+.+- |.. ....++.....||+||.+++..
T Consensus 243 ~d~~~d--CsG-----~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 243 PDVTFD--CSG-----AEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred CCeEEE--ccC-----chHHHHHHHHHhccCCEEEEec
Confidence 787774 222 2356677788999999988764
No 294
>PRK10742 putative methyltransferase; Provisional
Probab=83.57 E-value=3.9 Score=42.36 Aligned_cols=68 Identities=16% Similarity=0.005 Sum_probs=42.9
Q ss_pred EEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHc-------C--C-C-eeEeecCC-CCCCCCCCceeEE
Q 007641 392 VVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALER-------G--I-P-AISAVMGT-ERLPFPGIVFDAV 457 (595)
Q Consensus 392 rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~er-------g--i-~-~~~~v~d~-~~LPfpd~sFDlV 457 (595)
+|||+=+|.|..+..++.+ .|++++-++..... ++...++ + + . +.+...+. .-|.-...+||+|
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaal--L~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVV 168 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAAL--LDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHH--HHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEE
Confidence 8999999999999999986 68999998864332 2222222 1 1 1 22333332 2222122379999
Q ss_pred Eecc
Q 007641 458 HCAR 461 (595)
Q Consensus 458 ~~~~ 461 (595)
++-.
T Consensus 169 YlDP 172 (250)
T PRK10742 169 YLDP 172 (250)
T ss_pred EECC
Confidence 9986
No 295
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=82.62 E-value=7.6 Score=40.20 Aligned_cols=91 Identities=14% Similarity=0.094 Sum_probs=52.0
Q ss_pred CCCEEEEECCC-CchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCc
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v 464 (595)
++.+||-+||| .|..+..+++. .|++++.+. .+..++...+....+.........-..+.||+|+... .
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~--~ 234 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSP-----DKRELARKLGADEVVDSGAELDEQAAAGGADVILVTV--V 234 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECC--C
Confidence 46788889886 55555555554 566665553 3344444455432222111100000124589888631 1
Q ss_pred ccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 465 PWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 465 ~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
....+..+.+.|+++|.++...
T Consensus 235 -----~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 -----SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred -----cHHHHHHHHHhcccCCEEEEEC
Confidence 2357788899999999999764
No 296
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=82.41 E-value=2.4 Score=44.88 Aligned_cols=65 Identities=15% Similarity=0.239 Sum_probs=45.5
Q ss_pred CCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeC-CCCCcCchhHHHH-HHHHHHHHHcCCEEEE
Q 007641 451 GIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT-PVYQKLPEDVEIW-NAMSQLIKAMCWELVS 521 (595)
Q Consensus 451 d~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p-p~~~~l~e~i~~w-~~le~Lak~~Gw~~v~ 521 (595)
.+.||+|+.+.. +.+.+.+. +.++|+|||.|++-.. .+.....+.+..+ ..+.+|++.+||+.+.
T Consensus 220 ~~~Fd~ifvs~s-~vh~L~p~-----l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 220 QNFFDLIFVSCS-MVHFLKPE-----LFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKPVT 286 (289)
T ss_pred cCCCCEEEEhhh-hHhhcchH-----HHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCcccc
Confidence 367999998753 33333333 8889999999998764 2233445555555 7899999999998653
No 297
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.16 E-value=13 Score=36.09 Aligned_cols=101 Identities=11% Similarity=-0.002 Sum_probs=58.0
Q ss_pred CCCCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCC--CeeEeecCCCCCCCCCCceeEEEecc
Q 007641 387 GKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI--PAISAVMGTERLPFPGIVFDAVHCAR 461 (595)
Q Consensus 387 ~~~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi--~~~~~v~d~~~LPfpd~sFDlV~~~~ 461 (595)
+.+.++.+|||.|.|.+....++. ..+|+++.|-.+..+....- ..|. ...+..-+.....+.+-.|=+|+-..
T Consensus 70 ~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~-R~g~~k~trf~RkdlwK~dl~dy~~vviFgae 148 (199)
T KOG4058|consen 70 GNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAW-RAGCAKSTRFRRKDLWKVDLRDYRNVVIFGAE 148 (199)
T ss_pred CCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHH-HHhcccchhhhhhhhhhccccccceEEEeehH
Confidence 356689999999999988777774 67899999876655544332 2232 23344444444444433333333322
Q ss_pred cCcccccCHHHHHHHHHHhccCCcEEEEEeCCC
Q 007641 462 CRVPWHIEGGKLLLELNRVLRPGGFFIWSATPV 494 (595)
Q Consensus 462 c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~ 494 (595)
.. .+.+-..+..-|..+-.++-...|.
T Consensus 149 s~------m~dLe~KL~~E~p~nt~vvacRFPL 175 (199)
T KOG4058|consen 149 SV------MPDLEDKLRTELPANTRVVACRFPL 175 (199)
T ss_pred HH------HhhhHHHHHhhCcCCCeEEEEecCC
Confidence 11 1233344555566777777665543
No 298
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=81.50 E-value=7.4 Score=41.32 Aligned_cols=92 Identities=20% Similarity=0.156 Sum_probs=54.5
Q ss_pred CCCCEEEEECCC-CchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC------CCCCCCCCceeE
Q 007641 388 KRTRVVLDVGCG-VASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT------ERLPFPGIVFDA 456 (595)
Q Consensus 388 ~~~~rVLDIGCG-tG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~------~~LPfpd~sFDl 456 (595)
.++.+||=+||| .|.++..+++. .|++++.++ .+.+++++.|....+..... ..+ .....+|+
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~-----~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~-~~~~g~d~ 248 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDD-----RKLEWAREFGATHTVNSSGTDPVEAIRAL-TGGFGADV 248 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH-----HHHHHHHHcCCceEEcCCCcCHHHHHHHH-hCCCCCCE
Confidence 357899989875 34445555553 377777663 35566777776433221110 011 12235898
Q ss_pred EEecccCcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 457 VHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 457 V~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
|+-.- .....+....++||+||.+++...
T Consensus 249 vid~~-------g~~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 249 VIDAV-------GRPETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred EEECC-------CCHHHHHHHHHHhccCCEEEEECC
Confidence 87532 113567778899999999998754
No 299
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=81.33 E-value=6.6 Score=40.26 Aligned_cols=90 Identities=20% Similarity=0.169 Sum_probs=53.4
Q ss_pred CCCEEEEECCC-CchhHHHHhhC---C-cEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC----CCCCCCCCceeEEEe
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR---G-VLTMSFAPKDEHEAQVQFALERGIPAISAVMGT----ERLPFPGIVFDAVHC 459 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r---~-V~giDisp~di~~aqvq~A~ergi~~~~~v~d~----~~LPfpd~sFDlV~~ 459 (595)
++.+||=+|+| .|.++..+++. . |++++.++ ...+++++.|....+..... ..+. ....||+|+-
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~-----~r~~~a~~~Ga~~~i~~~~~~~~~~~~~-~~~g~d~vid 193 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSP-----DRRELALSFGATALAEPEVLAERQGGLQ-NGRGVDVALE 193 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH-----HHHHHHHHcCCcEecCchhhHHHHHHHh-CCCCCCEEEE
Confidence 57789989875 34444555552 3 67776653 34566667665433221110 1111 1235888875
Q ss_pred cccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 460 ~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
.- -....+..+.++|+|||++++..
T Consensus 194 ~~-------G~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 194 FS-------GATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CC-------CChHHHHHHHHHhcCCCEEEEec
Confidence 32 12357788899999999999875
No 300
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=80.52 E-value=8.9 Score=40.05 Aligned_cols=92 Identities=17% Similarity=0.148 Sum_probs=53.0
Q ss_pred CCCEEEEECCC-CchhHHHHhhC---C-cEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC--CCC-CC-CCCceeEEEe
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR---G-VLTMSFAPKDEHEAQVQFALERGIPAISAVMGT--ERL-PF-PGIVFDAVHC 459 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r---~-V~giDisp~di~~aqvq~A~ergi~~~~~v~d~--~~L-Pf-pd~sFDlV~~ 459 (595)
++.+||=+|+| .|.++..++++ . |++++.++ .+.+++++.|....+...+. ..+ .+ ....||+|+-
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~-----~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid 237 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSP-----ERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIE 237 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH-----HHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEE
Confidence 47788888875 33344444442 4 77776653 34566666675433222110 001 11 2236899885
Q ss_pred cccCcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 460 ~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
.. .....+..+.+.|+++|.+++...
T Consensus 238 ~~-------g~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 238 CS-------GNTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CC-------CCHHHHHHHHHHhhcCCEEEEEcC
Confidence 32 123456778899999999997653
No 301
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=80.44 E-value=5.4 Score=42.68 Aligned_cols=92 Identities=13% Similarity=0.023 Sum_probs=50.6
Q ss_pred CCCEEEEECCC-CchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCc
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v 464 (595)
++.+||=+|+| .|.++..+++. .|++++.+... ....+++.|...++.......+.-..+.+|+|+-.-
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~----~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~--- 255 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNK----EDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTV--- 255 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcch----hhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECC---
Confidence 46788889886 44555555553 56666665421 123344556543321111101100012478887532
Q ss_pred ccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 465 PWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 465 ~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
.....+..+.++|++||.+++..
T Consensus 256 ----g~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 256 ----SAVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred ----CCHHHHHHHHHHhcCCcEEEEeC
Confidence 12346778899999999999764
No 302
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=80.30 E-value=9.2 Score=37.66 Aligned_cols=92 Identities=24% Similarity=0.241 Sum_probs=53.4
Q ss_pred CCCEEEEECCCC-chhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCC---CC-CCCCCceeEEEec
Q 007641 389 RTRVVLDVGCGV-ASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTE---RL-PFPGIVFDAVHCA 460 (595)
Q Consensus 389 ~~~rVLDIGCGt-G~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~---~L-Pfpd~sFDlV~~~ 460 (595)
++.+||-+|+|. |..+..++.. .|++++.++. ...++...+....+...... .+ ......||+|+..
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 208 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDE-----KLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDA 208 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHH-----HHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEEC
Confidence 578999999985 5555555553 6777776642 23444444432221111100 00 1123569999864
Q ss_pred ccCcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 461 RCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 461 ~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
. . ....+..+.+.|+++|.++....
T Consensus 209 ~---~----~~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 209 V---G----GPETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred C---C----CHHHHHHHHHhcccCCEEEEEcc
Confidence 2 1 11567778899999999997753
No 303
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=80.26 E-value=7.4 Score=41.18 Aligned_cols=88 Identities=10% Similarity=0.100 Sum_probs=51.0
Q ss_pred CCCEEEEECCC-CchhHHHHhh-----CCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEeccc
Q 007641 389 RTRVVLDVGCG-VASFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARC 462 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~-----r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c 462 (595)
++.+||=+||| .|.++..++. ..|++++.++. ++++++..+. ..... .+. ....||+|+-.-
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~-----k~~~a~~~~~--~~~~~---~~~-~~~g~d~viD~~- 230 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQE-----KLDLFSFADE--TYLID---DIP-EDLAVDHAFECV- 230 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHh-----HHHHHhhcCc--eeehh---hhh-hccCCcEEEECC-
Confidence 57899999986 4445444443 25888887643 3444443222 11111 111 111489888532
Q ss_pred CcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 463 RVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 463 ~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
- .......+....++||+||.+++..
T Consensus 231 --G-~~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 231 --G-GRGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred --C-CCccHHHHHHHHHhCcCCcEEEEEe
Confidence 1 1112457888999999999999875
No 304
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=79.35 E-value=9.6 Score=35.31 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=40.0
Q ss_pred CceeEEEecccCcccccCH----HHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEEe
Q 007641 452 IVFDAVHCARCRVPWHIEG----GKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSIS 523 (595)
Q Consensus 452 ~sFDlV~~~~c~v~~h~d~----~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~~ 523 (595)
..||+|+... +. -..++ ..+|..|+|+++|||.|.-... -..+..-+..+||.+....
T Consensus 49 ~~~Da~ylDg-Fs-P~~nPelWs~e~~~~l~~~~~~~~~l~Tys~------------a~~Vr~~L~~aGF~v~~~~ 110 (124)
T PF05430_consen 49 ARFDAWYLDG-FS-PAKNPELWSEELFKKLARLSKPGGTLATYSS------------AGAVRRALQQAGFEVEKVP 110 (124)
T ss_dssp T-EEEEEE-S-S--TTTSGGGSSHHHHHHHHHHEEEEEEEEES--------------BHHHHHHHHHCTEEEEEEE
T ss_pred ccCCEEEecC-CC-CcCCcccCCHHHHHHHHHHhCCCcEEEEeec------------hHHHHHHHHHcCCEEEEcC
Confidence 5699999864 22 22233 6899999999999999885321 1467788999999975543
No 305
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=79.03 E-value=8.2 Score=41.26 Aligned_cols=91 Identities=19% Similarity=0.120 Sum_probs=53.6
Q ss_pred CCCEEEEECCC-CchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC---CCC-CCCCCceeEEEe
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT---ERL-PFPGIVFDAVHC 459 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~---~~L-Pfpd~sFDlV~~ 459 (595)
++.+||=+|+| .|.++..+++. .|++++.++ .+.+++++.|....+..... ..+ ....+.+|+|+-
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~-----~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid 265 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNE-----DKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFE 265 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCH-----HHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEE
Confidence 56788889875 34455555552 477777663 35566766676433222110 000 011125898885
Q ss_pred cccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 460 ~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
.- .....+..+.++|++||.+++..
T Consensus 266 ~~-------G~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 266 MA-------GSVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CC-------CChHHHHHHHHHHhcCCEEEEEc
Confidence 32 11356778889999999999765
No 306
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=78.75 E-value=12 Score=38.60 Aligned_cols=91 Identities=21% Similarity=0.129 Sum_probs=51.9
Q ss_pred CCCCEEEEECCC-CchhHHHHhhC---C-cEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCC----CCCCCCceeEEE
Q 007641 388 KRTRVVLDVGCG-VASFGGFLFDR---G-VLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER----LPFPGIVFDAVH 458 (595)
Q Consensus 388 ~~~~rVLDIGCG-tG~~a~~La~r---~-V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~----LPfpd~sFDlV~ 458 (595)
.++.+||-+|+| .|..+..+++. . |++++-++. +..++.+.+....+.. .... .......+|+|+
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~-----~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~vd~v~ 231 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEE-----KLELAKKLGATETVDP-SREDPEAQKEDNPYGFDVVI 231 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHH-----HHHHHHHhCCeEEecC-CCCCHHHHHHhcCCCCcEEE
Confidence 357799999865 24444445553 3 555555532 3344455565422111 1111 011335689998
Q ss_pred ecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 459 CARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 459 ~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
... .....+.++.++|+++|+|+...
T Consensus 232 ~~~-------~~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 232 EAT-------GVPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred ECC-------CChHHHHHHHHHHhcCCEEEEEe
Confidence 632 12367888899999999998764
No 307
>PRK11524 putative methyltransferase; Provisional
Probab=78.46 E-value=5.7 Score=41.48 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=32.5
Q ss_pred CCCCEEEEECCCCchhHHHHhh--CCcEEEeCCchhHHHHHHHH
Q 007641 388 KRTRVVLDVGCGVASFGGFLFD--RGVLTMSFAPKDEHEAQVQF 429 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~--r~V~giDisp~di~~aqvq~ 429 (595)
.++..|||.=||+|..+....+ |+.+|+|+++..+..+..++
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl 250 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRL 250 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHH
Confidence 4689999999999987765554 69999999987655554443
No 308
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=78.07 E-value=5.6 Score=44.61 Aligned_cols=102 Identities=19% Similarity=0.254 Sum_probs=58.2
Q ss_pred CCCEEEEECCCCch--hHHHHhhC----CcEEEeCCchhHHHHHHHHHH--HcCCCeeEe-ecCCCCCCCCCC-ceeEEE
Q 007641 389 RTRVVLDVGCGVAS--FGGFLFDR----GVLTMSFAPKDEHEAQVQFAL--ERGIPAISA-VMGTERLPFPGI-VFDAVH 458 (595)
Q Consensus 389 ~~~rVLDIGCGtG~--~a~~La~r----~V~giDisp~di~~aqvq~A~--ergi~~~~~-v~d~~~LPfpd~-sFDlV~ 458 (595)
....++|+|.|.|. +++.++-+ .+..||.+-.|......+.-. +.|-+.+.- ++-...+|.+.. .||+|+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 35678889888764 44444333 678888886655444332211 222222222 222356676544 499999
Q ss_pred ecccCccccc-C---HHHHHHH-HHHhccCCcEEEEEeC
Q 007641 459 CARCRVPWHI-E---GGKLLLE-LNRVLRPGGFFIWSAT 492 (595)
Q Consensus 459 ~~~c~v~~h~-d---~~~lL~E-l~RvLKPGG~Lvis~p 492 (595)
|++ .+++. . .....+. ..+..++||++++...
T Consensus 280 ~ah--~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 280 CAH--KLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred eee--eeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence 987 33333 2 2344444 4456789999998853
No 309
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=78.07 E-value=5.2 Score=45.61 Aligned_cols=94 Identities=15% Similarity=0.114 Sum_probs=56.6
Q ss_pred CCCEEEEECCCCc-hhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC-------------CC-----
Q 007641 389 RTRVVLDVGCGVA-SFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT-------------ER----- 446 (595)
Q Consensus 389 ~~~rVLDIGCGtG-~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~-------------~~----- 446 (595)
++.+||=+|||.- ..+..++.. .|+++|..+. ..+.++..|...+...... ..
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~-----rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~ 237 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE-----VKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAE 237 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHcCCeEEeccccccccccccceeecCHHHHHHH
Confidence 5689999999954 455545442 5778888754 3444555554332111100 00
Q ss_pred ---CCCCCCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEE
Q 007641 447 ---LPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFI 488 (595)
Q Consensus 447 ---LPfpd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lv 488 (595)
++-.-..+|+|++. .+++-...+..+.+++.+.+|||+.++
T Consensus 238 ~~~~~e~~~~~DIVI~T-alipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 238 MELFAAQAKEVDIIITT-ALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHhCCCCEEEEC-cccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 11112459999875 234444455568889999999999987
No 310
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=77.70 E-value=20 Score=36.92 Aligned_cols=125 Identities=14% Similarity=0.199 Sum_probs=68.1
Q ss_pred EEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCC---CCCCceeEEEecc-cCc
Q 007641 392 VVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP---FPGIVFDAVHCAR-CRV 464 (595)
Q Consensus 392 rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LP---fpd~sFDlV~~~~-c~v 464 (595)
+|||+=||.|.+..-|... -|.++|+++....-...++ . .....|...+. ++. .+|+++... |--
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~----~---~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~ 73 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANF----P---EVICGDITEIDPSDLPK-DVDLLIGGPPCQG 73 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHH----T---EEEESHGGGCHHHHHHH-T-SEEEEE---TT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhcc----c---ccccccccccccccccc-cceEEEeccCCce
Confidence 6999999999998888886 5688899876433222222 2 44444444332 443 499999764 321
Q ss_pred cccc-------CH-HHHH---HHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEEeecc
Q 007641 465 PWHI-------EG-GKLL---LELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKDT 526 (595)
Q Consensus 465 ~~h~-------d~-~~lL---~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~~~~~ 526 (595)
+-.. +. ..++ .++.+.++|.-+|+=-++.+... .....+..+...+..+||.+....-..
T Consensus 74 fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~~--~~~~~~~~i~~~l~~lGY~v~~~vlna 144 (335)
T PF00145_consen 74 FSIAGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLLSS--KNGEVFKEILEELEELGYNVQWRVLNA 144 (335)
T ss_dssp TSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGGTG--GGHHHHHHHHHHHHHTTEEEEEEEEEG
T ss_pred EeccccccccccccchhhHHHHHHHhhccceEEEecccceeecc--ccccccccccccccccceeehhccccH
Confidence 1111 11 1233 34455578864333222222222 122567888888999998876554443
No 311
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=77.63 E-value=3.8 Score=39.75 Aligned_cols=38 Identities=16% Similarity=0.071 Sum_probs=27.0
Q ss_pred CCCCEEEEECCCCchhHHHHhh--CCcEEEeCCchhHHHH
Q 007641 388 KRTRVVLDVGCGVASFGGFLFD--RGVLTMSFAPKDEHEA 425 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~--r~V~giDisp~di~~a 425 (595)
.++..|||.=||+|..+.+... |..+|+|+++.....|
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a 229 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIA 229 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHh
Confidence 4689999999999987766655 6799999997654433
No 312
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=77.60 E-value=13 Score=38.81 Aligned_cols=91 Identities=21% Similarity=0.192 Sum_probs=51.2
Q ss_pred CCCEEEEECCCC-chhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecC--CCCCCCCCCceeEEEecc
Q 007641 389 RTRVVLDVGCGV-ASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMG--TERLPFPGIVFDAVHCAR 461 (595)
Q Consensus 389 ~~~rVLDIGCGt-G~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d--~~~LPfpd~sFDlV~~~~ 461 (595)
++.+||-.|||. |..+..++++ .|++++.++. +...+...+...++.... ...+....+.||+|+...
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~-----~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~ 239 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADA-----PLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEAS 239 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHH-----HHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECC
Confidence 477888888764 4555555553 3556655433 333444455432221111 111221223489988632
Q ss_pred cCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 462 CRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 462 c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
.....+..+.+.|+++|.|+...
T Consensus 240 -------g~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 240 -------GAPAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred -------CCHHHHHHHHHHHhcCCEEEEEe
Confidence 11356788999999999999764
No 313
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=77.59 E-value=8.5 Score=40.11 Aligned_cols=84 Identities=21% Similarity=0.178 Sum_probs=48.5
Q ss_pred CCCEEEEECCC-CchhHHHHhhC---C-cEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccC
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR---G-VLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCR 463 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r---~-V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~ 463 (595)
++.+||=+||| .|.++..+++. . |+++|..+. +++.|.... ..+.... ....||+|+-.-
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~-----rl~~a~~~~------~i~~~~~--~~~g~Dvvid~~-- 208 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPR-----RRDGATGYE------VLDPEKD--PRRDYRAIYDAS-- 208 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH-----HHHhhhhcc------ccChhhc--cCCCCCEEEECC--
Confidence 35678888886 55666666653 3 455665432 233333221 1111110 124589888642
Q ss_pred cccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 464 VPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 464 v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
.....+..+.++|+|||++++...
T Consensus 209 -----G~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 209 -----GDPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred -----CCHHHHHHHHHhhhcCcEEEEEee
Confidence 123567888999999999998753
No 314
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=77.58 E-value=9.9 Score=42.25 Aligned_cols=97 Identities=15% Similarity=0.092 Sum_probs=57.0
Q ss_pred HHHHHHhcccccCCCCCCEEEEECCCC-chhHHHHhh---CCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCC
Q 007641 374 IDFIQESVPDVAWGKRTRVVLDVGCGV-ASFGGFLFD---RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF 449 (595)
Q Consensus 374 id~L~~~L~~l~~~~~~~rVLDIGCGt-G~~a~~La~---r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPf 449 (595)
.+.|.+.... ...+.+|+=+|||. |.....+++ ..|+++|+++. ....|...|..... .. ..+
T Consensus 189 ~~~i~r~t~~---~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~-----R~~~A~~~G~~~~~--~~-e~v-- 255 (413)
T cd00401 189 IDGIKRATDV---MIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI-----CALQAAMEGYEVMT--ME-EAV-- 255 (413)
T ss_pred HHHHHHhcCC---CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh-----hHHHHHhcCCEEcc--HH-HHH--
Confidence 3445444432 12578999999994 444444444 26888888754 33455556653221 11 111
Q ss_pred CCCceeEEEecccCcccccCHHHHHH-HHHHhccCCcEEEEEeC
Q 007641 450 PGIVFDAVHCARCRVPWHIEGGKLLL-ELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 450 pd~sFDlV~~~~c~v~~h~d~~~lL~-El~RvLKPGG~Lvis~p 492 (595)
..+|+|+..- ....++. ...+++|+||+|+....
T Consensus 256 --~~aDVVI~at-------G~~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 256 --KEGDIFVTTT-------GNKDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred --cCCCEEEECC-------CCHHHHHHHHHhcCCCCcEEEEeCC
Confidence 2479998742 1223444 45899999999988764
No 315
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=77.42 E-value=5.5 Score=43.39 Aligned_cols=65 Identities=11% Similarity=0.197 Sum_probs=42.2
Q ss_pred cCceeecCCCCccccCchHHHHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC------------CcEEEeCCch
Q 007641 353 TGEYLTFPGGGTQFKNGALHYIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR------------GVLTMSFAPK 420 (595)
Q Consensus 353 ~g~~~~Fpggg~~F~~ga~~yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r------------~V~giDisp~ 420 (595)
.|++++-|.-+..|......+.-.+-+.+.. +....|++||.|.|.++..|++. .+..+++++.
T Consensus 45 ~GDFiTApels~lFGella~~~~~~wq~~g~----p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~ 120 (370)
T COG1565 45 KGDFITAPELSQLFGELLAEQFLQLWQELGR----PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPE 120 (370)
T ss_pred cCCeeechhHHHHHHHHHHHHHHHHHHHhcC----CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHH
Confidence 4677776666666665544443333232221 23567999999999998877662 5788889876
Q ss_pred h
Q 007641 421 D 421 (595)
Q Consensus 421 d 421 (595)
-
T Consensus 121 L 121 (370)
T COG1565 121 L 121 (370)
T ss_pred H
Confidence 3
No 316
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=76.41 E-value=16 Score=36.84 Aligned_cols=90 Identities=21% Similarity=0.118 Sum_probs=50.9
Q ss_pred CCCCEEEEECCCC-chhHHHHhhC---C-cEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEeccc
Q 007641 388 KRTRVVLDVGCGV-ASFGGFLFDR---G-VLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARC 462 (595)
Q Consensus 388 ~~~~rVLDIGCGt-G~~a~~La~r---~-V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c 462 (595)
.++.+||=.|||. |..+..++++ . |++++.++. +..++.+.|....+... ...+ .....+|+|+...
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~-----~~~~~~~~g~~~~~~~~-~~~~-~~~~~~d~vl~~~- 167 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAA-----RRELAEALGPADPVAAD-TADE-IGGRGADVVIEAS- 167 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHH-----HHHHHHHcCCCcccccc-chhh-hcCCCCCEEEEcc-
Confidence 3577888888763 4444555553 4 777766533 33455555511111110 0011 1234589888531
Q ss_pred CcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 463 RVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 463 ~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
.....+..+.+.|+++|.|+...
T Consensus 168 ------~~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 168 ------GSPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred ------CChHHHHHHHHHhcCCcEEEEEe
Confidence 11346788899999999998764
No 317
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=75.76 E-value=6 Score=43.37 Aligned_cols=97 Identities=16% Similarity=0.098 Sum_probs=60.5
Q ss_pred CCEEEEECCCCchhHHHHhh-----CCcEEEeCCchhHHHHHHHHHHHcCCCe---eEeecCCCCC-CCCCCceeEEEec
Q 007641 390 TRVVLDVGCGVASFGGFLFD-----RGVLTMSFAPKDEHEAQVQFALERGIPA---ISAVMGTERL-PFPGIVFDAVHCA 460 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~-----r~V~giDisp~di~~aqvq~A~ergi~~---~~~v~d~~~L-Pfpd~sFDlV~~~ 460 (595)
..+|||.=+|+|.=+..++. ..|+.-|+++..+...+.+. ...++.. .+...|+..+ ......||+|-.-
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~-~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNL-ELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHH-HHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhH-hhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 45899999999986655444 26788899988766555443 3445443 3444454222 2345789999875
Q ss_pred ccCcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 461 RCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 461 ~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
. .-.+..+|..+.+.+|.||+|.++.+
T Consensus 129 P-----fGSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 129 P-----FGSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp ------SS--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred C-----CCCccHhHHHHHHHhhcCCEEEEecc
Confidence 4 22567899999999999999999965
No 318
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=75.58 E-value=7.3 Score=41.48 Aligned_cols=102 Identities=14% Similarity=0.039 Sum_probs=62.2
Q ss_pred CCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHH--c---CCCeeEeecCCCC-C-CCCCCceeEE
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALE--R---GIPAISAVMGTER-L-PFPGIVFDAV 457 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~e--r---gi~~~~~v~d~~~-L-Pfpd~sFDlV 457 (595)
..++||=||-|.|.+.+..+.+ +++-+++...-+... .++-.. . +..+.+..+|... + -.+.+.||+|
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~s-k~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESS-KQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHH-HHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 4689999999999998877775 667777764433222 222211 1 2234444444211 1 1336889999
Q ss_pred EecccCccccc----CHHHHHHHHHHhccCCcEEEEEeC
Q 007641 458 HCARCRVPWHI----EGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 458 ~~~~c~v~~h~----d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
+.--. -+..+ -...++.-+.+.|||||++++...
T Consensus 200 i~dss-dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 200 ITDSS-DPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred EEecC-CccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 96420 01111 124677789999999999998753
No 319
>PLN02740 Alcohol dehydrogenase-like
Probab=75.22 E-value=13 Score=40.06 Aligned_cols=93 Identities=17% Similarity=0.126 Sum_probs=53.8
Q ss_pred CCCCEEEEECCC-CchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC-----CCC-CCCCCceeE
Q 007641 388 KRTRVVLDVGCG-VASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT-----ERL-PFPGIVFDA 456 (595)
Q Consensus 388 ~~~~rVLDIGCG-tG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~-----~~L-Pfpd~sFDl 456 (595)
.++.+||=+||| .|.++..+++. .|++++.++ ...+++++.|....+..... ..+ .+..+.||+
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~-----~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dv 271 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINP-----EKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDY 271 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCCh-----HHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCE
Confidence 357899999875 33344444442 477777763 35566767776543321110 000 011225898
Q ss_pred EEecccCcccccCHHHHHHHHHHhccCC-cEEEEEeC
Q 007641 457 VHCARCRVPWHIEGGKLLLELNRVLRPG-GFFIWSAT 492 (595)
Q Consensus 457 V~~~~c~v~~h~d~~~lL~El~RvLKPG-G~Lvis~p 492 (595)
|+-.- .....+....++|++| |.+++...
T Consensus 272 vid~~-------G~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 272 SFECA-------GNVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred EEECC-------CChHHHHHHHHhhhcCCCEEEEEcc
Confidence 88632 1235777888899997 99887653
No 320
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=75.16 E-value=5.1 Score=43.42 Aligned_cols=106 Identities=21% Similarity=0.187 Sum_probs=64.9
Q ss_pred CCCCEEEEECCCCchhHHHHhh--CCcEEEeCCchhHHHH---H----HHHHHHcC-CC--eeEeecCCCCCCCC-CCce
Q 007641 388 KRTRVVLDVGCGVASFGGFLFD--RGVLTMSFAPKDEHEA---Q----VQFALERG-IP--AISAVMGTERLPFP-GIVF 454 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~--r~V~giDisp~di~~a---q----vq~A~erg-i~--~~~~v~d~~~LPfp-d~sF 454 (595)
+++..|+|-=.|||++....+. ..|+|.||+..+++.. . .++ ++-| .+ ..++.+|...-|+- ...|
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNF-kQYg~~~~fldvl~~D~sn~~~rsn~~f 285 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANF-KQYGSSSQFLDVLTADFSNPPLRSNLKF 285 (421)
T ss_pred CCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhH-HHhCCcchhhheeeecccCcchhhccee
Confidence 5789999999999998766665 4799999998776521 1 111 1122 11 22344444444443 3579
Q ss_pred eEEEecccC-ccc---------------------cc---CH-------HHHHHHHHHhccCCcEEEEEeCCC
Q 007641 455 DAVHCARCR-VPW---------------------HI---EG-------GKLLLELNRVLRPGGFFIWSATPV 494 (595)
Q Consensus 455 DlV~~~~c~-v~~---------------------h~---d~-------~~lL~El~RvLKPGG~Lvis~pp~ 494 (595)
|+|+|-.++ |.. |. .. ..+|.=.+|.|.-||+|++-.|++
T Consensus 286 DaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~ 357 (421)
T KOG2671|consen 286 DAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI 357 (421)
T ss_pred eEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence 999997421 000 00 00 145666778999999999876643
No 321
>PHA01634 hypothetical protein
Probab=74.97 E-value=11 Score=35.73 Aligned_cols=34 Identities=21% Similarity=0.128 Sum_probs=28.7
Q ss_pred CCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhH
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDE 422 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di 422 (595)
.+++|||||++.|..+.+++-+ .|++++.++...
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~ 64 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLR 64 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHH
Confidence 4789999999999999888774 799999987643
No 322
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=74.91 E-value=20 Score=37.17 Aligned_cols=91 Identities=14% Similarity=0.090 Sum_probs=54.7
Q ss_pred CCCCEEEEECC--CCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCC-----CCCCCceeEE
Q 007641 388 KRTRVVLDVGC--GVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL-----PFPGIVFDAV 457 (595)
Q Consensus 388 ~~~~rVLDIGC--GtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~L-----Pfpd~sFDlV 457 (595)
.++.+||=.|+ |.|.++..|++. .|++++-+ .....++++.|....+...+...+ ....+.||+|
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s-----~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv 211 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGS-----DEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCY 211 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEE
Confidence 35789998885 466777777764 45555544 234566666676443322211000 1112458988
Q ss_pred EecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 458 ~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
+-.- ....+..+.++|++||+|++..
T Consensus 212 ~d~~--------G~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 212 FDNV--------GGEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred EECC--------CHHHHHHHHHHhCcCcEEEEec
Confidence 8532 1245688899999999999764
No 323
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=73.71 E-value=35 Score=37.54 Aligned_cols=94 Identities=16% Similarity=0.066 Sum_probs=58.6
Q ss_pred EEEEECCCCchhHHHHhhCCcEEEeCCchhHHHHHHHHHHHcCCCee-EeecCCCCCCCCCCceeEEEecccCccccc-C
Q 007641 392 VVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAI-SAVMGTERLPFPGIVFDAVHCARCRVPWHI-E 469 (595)
Q Consensus 392 rVLDIGCGtG~~a~~La~r~V~giDisp~di~~aqvq~A~ergi~~~-~~v~d~~~LPfpd~sFDlV~~~~c~v~~h~-d 469 (595)
+||=|+=..|.++..|+...++.+ -+....+.+..+.+...+++.. +...+. .-++| ..||+|+.. ++-.. .
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~~-~ds~~~~~~~~~n~~~n~~~~~~~~~~~~-~~~~~-~~~d~vl~~---~PK~~~~ 120 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYSI-GDSYISELATRENLRLNGIDESSVKFLDS-TADYP-QQPGVVLIK---VPKTLAL 120 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCee-ehHHHHHHHHHHHHHHcCCCcccceeecc-ccccc-CCCCEEEEE---eCCCHHH
Confidence 789999999999999997766544 2223334444444555566532 112211 12233 449998864 23222 2
Q ss_pred HHHHHHHHHHhccCCcEEEEEe
Q 007641 470 GGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 470 ~~~lL~El~RvLKPGG~Lvis~ 491 (595)
....|..+.++|.||+.+++..
T Consensus 121 l~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 121 LEQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred HHHHHHHHHhhCCCCCEEEEEE
Confidence 3678888999999999987653
No 324
>PRK13699 putative methylase; Provisional
Probab=73.32 E-value=11 Score=38.14 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=32.8
Q ss_pred CCCCEEEEECCCCchhHHHHhh--CCcEEEeCCchhHHHHHHHH
Q 007641 388 KRTRVVLDVGCGVASFGGFLFD--RGVLTMSFAPKDEHEAQVQF 429 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~--r~V~giDisp~di~~aqvq~ 429 (595)
.++..|||.=||+|+.+....+ +.++|+++++.....+..++
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~ 205 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRL 205 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHH
Confidence 3688999999999998766655 68999999987665554443
No 325
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=73.15 E-value=12 Score=37.70 Aligned_cols=124 Identities=13% Similarity=0.077 Sum_probs=69.1
Q ss_pred CCCCCCEEEEECCCCchhHHHHhh--------CCcEEEeCCchhHHHHHHHHHHHcCCCee-EeecCCCCCC-------C
Q 007641 386 WGKRTRVVLDVGCGVASFGGFLFD--------RGVLTMSFAPKDEHEAQVQFALERGIPAI-SAVMGTERLP-------F 449 (595)
Q Consensus 386 ~~~~~~rVLDIGCGtG~~a~~La~--------r~V~giDisp~di~~aqvq~A~ergi~~~-~~v~d~~~LP-------f 449 (595)
|....+.|+++|.-.|..+.+++. ..|+++||+-.....+.++ .+.+ ++..+..... .
T Consensus 66 w~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egss~dpai~eqi~~~ 139 (237)
T COG3510 66 WELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGSSTDPAIAEQIRRL 139 (237)
T ss_pred HhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCCCCCHHHHHHHHHH
Confidence 444578999999998887777766 2799999987655444322 2323 3332222110 1
Q ss_pred CCCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeCCCCCcCc-hhH-----HHHHHHHHHHHHcC
Q 007641 450 PGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQKLP-EDV-----EIWNAMSQLIKAMC 516 (595)
Q Consensus 450 pd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~-e~i-----~~w~~le~Lak~~G 516 (595)
..+.--+.+|.. .-|.|...-+-|+-+.++|-.|-|+++....+..... ..+ ....+++..++..+
T Consensus 140 ~~~y~kIfvilD-sdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g~gP~~AVe~ylr~~p 211 (237)
T COG3510 140 KNEYPKIFVILD-SDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFGGGPYEAVEAYLREFP 211 (237)
T ss_pred hcCCCcEEEEec-CCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCCcccchhcCCChHHHHHHHHHhCC
Confidence 111112223322 2344434456777788999999999988654332211 100 12356666666665
No 326
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=73.02 E-value=9.8 Score=41.57 Aligned_cols=98 Identities=20% Similarity=0.129 Sum_probs=69.6
Q ss_pred CCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCC-CCCCCceeEEEecccCc
Q 007641 390 TRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL-PFPGIVFDAVHCARCRV 464 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~L-Pfpd~sFDlV~~~~c~v 464 (595)
..+|||.=+|+|.=+..++-- .|+.=||+|..+...+.+.....+..+.....|+..+ .-....||+|=.-.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiDP--- 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDIDP--- 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecCC---
Confidence 578999999999877666652 5778899998887777666655455555555453222 11126799886643
Q ss_pred ccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 465 PWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 465 ~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
.-.+.-++..+.|.+|.||++.++.+
T Consensus 130 --FGSPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 130 --FGSPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred --CCCCchHHHHHHHHhhcCCEEEEEec
Confidence 12456788889999999999999965
No 327
>PLN02827 Alcohol dehydrogenase-like
Probab=72.24 E-value=17 Score=39.28 Aligned_cols=92 Identities=13% Similarity=0.057 Sum_probs=52.4
Q ss_pred CCCEEEEECCC-CchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC-CC----C-CCCCCceeEE
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT-ER----L-PFPGIVFDAV 457 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~-~~----L-Pfpd~sFDlV 457 (595)
++.+||=+|+| .|.++..+++. .|++++.++ .+.+++++.|....+..... .. + .+..+.||+|
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~-----~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~v 267 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINP-----EKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYS 267 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH-----HHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEE
Confidence 57899999875 33444444442 366666653 34566777776433221110 00 0 0111258988
Q ss_pred EecccCcccccCHHHHHHHHHHhccCC-cEEEEEeC
Q 007641 458 HCARCRVPWHIEGGKLLLELNRVLRPG-GFFIWSAT 492 (595)
Q Consensus 458 ~~~~c~v~~h~d~~~lL~El~RvLKPG-G~Lvis~p 492 (595)
+-.- .....+....++||+| |.+++...
T Consensus 268 id~~-------G~~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 268 FECV-------GDTGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred EECC-------CChHHHHHHHHhhccCCCEEEEECC
Confidence 7532 1224677888999999 99987643
No 328
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=72.13 E-value=13 Score=39.72 Aligned_cols=73 Identities=10% Similarity=0.068 Sum_probs=46.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCC----CC-CCCCceeEEE
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER----LP-FPGIVFDAVH 458 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~----LP-fpd~sFDlV~ 458 (595)
.++..+||.=||.|.-+..|+.+ .|+|+|.++..+..+...... .+-.+.+....... +. ....+||.|+
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~-~~~R~~~i~~nF~~l~~~l~~~~~~~vDgIl 97 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD-FEGRVVLIHDNFANFFEHLDELLVTKIDGIL 97 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh-cCCcEEEEeCCHHHHHHHHHhcCCCcccEEE
Confidence 35789999999999999888874 699999998877666543321 12123333333222 11 1234688887
Q ss_pred ecc
Q 007641 459 CAR 461 (595)
Q Consensus 459 ~~~ 461 (595)
+..
T Consensus 98 ~DL 100 (305)
T TIGR00006 98 VDL 100 (305)
T ss_pred Eec
Confidence 653
No 329
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=71.79 E-value=22 Score=37.91 Aligned_cols=91 Identities=14% Similarity=0.039 Sum_probs=54.7
Q ss_pred CCCCEEEEECC--CCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHH-HcCCCeeEeec---CC-CCC-CCCCCceeE
Q 007641 388 KRTRVVLDVGC--GVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFAL-ERGIPAISAVM---GT-ERL-PFPGIVFDA 456 (595)
Q Consensus 388 ~~~~rVLDIGC--GtG~~a~~La~r---~V~giDisp~di~~aqvq~A~-ergi~~~~~v~---d~-~~L-Pfpd~sFDl 456 (595)
.++.+||=.|+ |.|.++..+++. .|++++.++ ....+++ +.|....+... +. ..+ .+..+.+|+
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~-----~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~ 231 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSS-----QKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDI 231 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCH-----HHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEE
Confidence 35789999998 367777777774 456665543 2344444 45654433221 10 001 011235898
Q ss_pred EEecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 457 VHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 457 V~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
|+-.- . ...+..+.++|++||.|++..
T Consensus 232 v~d~v-------G-~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 232 YFDNV-------G-GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred EEECC-------C-HHHHHHHHHHhccCCEEEEEC
Confidence 88532 1 257788999999999999764
No 330
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=71.50 E-value=22 Score=37.37 Aligned_cols=92 Identities=11% Similarity=0.074 Sum_probs=50.4
Q ss_pred CCCEEEEECCC-CchhHHHHhhC---C-cEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC--CCC--CCCCCcee-EEE
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR---G-VLTMSFAPKDEHEAQVQFALERGIPAISAVMGT--ERL--PFPGIVFD-AVH 458 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r---~-V~giDisp~di~~aqvq~A~ergi~~~~~v~d~--~~L--Pfpd~sFD-lV~ 458 (595)
++.+||=+||| .|.++..+++. . |++++.++ ...+++++.|....+..... ..+ -.....+| +|+
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~-----~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~ 234 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINS-----EKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLIL 234 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH-----HHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEE
Confidence 57789988875 33344444442 3 56666653 33455555565332211110 000 01223577 555
Q ss_pred ecccCcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 459 CARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 459 ~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
-.- -....+....++|++||.+++...
T Consensus 235 d~~-------G~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 235 ETA-------GVPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred ECC-------CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 321 124578889999999999998753
No 331
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=71.32 E-value=23 Score=37.50 Aligned_cols=93 Identities=12% Similarity=0.133 Sum_probs=51.7
Q ss_pred CCCCEEEEECCCC-chhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC--CCC----C-C-CCCcee
Q 007641 388 KRTRVVLDVGCGV-ASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT--ERL----P-F-PGIVFD 455 (595)
Q Consensus 388 ~~~~rVLDIGCGt-G~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~--~~L----P-f-pd~sFD 455 (595)
.++.+||=+|||. |.++..+++. .|++++.++ ...+++++.|....+..... ..+ . + ....+|
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~-----~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d 239 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDP-----EKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLR 239 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH-----HHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCC
Confidence 3578999999853 4455555553 567777664 34566666665433221110 000 0 0 112344
Q ss_pred ----EEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 456 ----AVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 456 ----lV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
+|+-.- .....+..+.++|++||++++...
T Consensus 240 ~~~d~v~d~~-------g~~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 240 STGWKIFECS-------GSKPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred CCcCEEEECC-------CChHHHHHHHHHHhcCCeEEEECc
Confidence 444211 123567778889999999998753
No 332
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=70.80 E-value=3.9 Score=46.11 Aligned_cols=99 Identities=15% Similarity=0.141 Sum_probs=65.5
Q ss_pred CCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHHHHHHHcCCCee--EeecCC----CCCCCCCCceeEE
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQVQFALERGIPAI--SAVMGT----ERLPFPGIVFDAV 457 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqvq~A~ergi~~~--~~v~d~----~~LPfpd~sFDlV 457 (595)
.+-+|||.=|++|.-+...+.. .|++-|+++..+...+.+.-. .++..+ ....|+ ...+-....||+|
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~-N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVEL-NGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhh-cCchhhcccccchHHHHHHhccccccccceE
Confidence 4668999999999877766662 788888887766544433222 122211 111221 2334446789999
Q ss_pred EecccCcccccCHHHHHHHHHHhccCCcEEEEEeCC
Q 007641 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATP 493 (595)
Q Consensus 458 ~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp 493 (595)
..-. + -.+..+|..+.+.++.||.|+++.+.
T Consensus 188 DLDP--y---Gs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 188 DLDP--Y---GSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred ecCC--C---CCccHHHHHHHHHhhcCCEEEEEecc
Confidence 9764 1 24568999999999999999999654
No 333
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=70.53 E-value=13 Score=40.14 Aligned_cols=91 Identities=12% Similarity=0.067 Sum_probs=50.9
Q ss_pred CCCEEEEECCC-CchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCC-CCCCCceeEEEecccC
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL-PFPGIVFDAVHCARCR 463 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~L-Pfpd~sFDlV~~~~c~ 463 (595)
++.+||=.|+| .|.++..+++. .|++++.+.. ....++++.|....+...+...+ ... ..+|+|+-.-
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~----~~~~~a~~lGa~~~i~~~~~~~v~~~~-~~~D~vid~~-- 250 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSE----KEREAIDRLGADSFLVTTDSQKMKEAV-GTMDFIIDTV-- 250 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChH----HhHHHHHhCCCcEEEcCcCHHHHHHhh-CCCcEEEECC--
Confidence 57788888875 34455555553 5666665532 22345555665433221111000 001 2478887531
Q ss_pred cccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 464 VPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 464 v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
.....+..+.++|++||.+++..
T Consensus 251 -----G~~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 251 -----SAEHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred -----CcHHHHHHHHHhhcCCCEEEEEc
Confidence 12346788889999999999764
No 334
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=69.03 E-value=12 Score=33.46 Aligned_cols=78 Identities=26% Similarity=0.140 Sum_probs=52.6
Q ss_pred EEEEECCCCchhHHHHhhCCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCcccccCHH
Q 007641 392 VVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGG 471 (595)
Q Consensus 392 rVLDIGCGtG~~a~~La~r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h~d~~ 471 (595)
+|| +-||.|..+..+++ .+.+.+.++|+++.+.......++-.-..||+|+... ...
T Consensus 2 ~Il-l~C~~GaSSs~la~---------------km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~P-------Qv~ 58 (99)
T cd05565 2 NVL-VLCAGGGTSGLLAN---------------ALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAP-------QMA 58 (99)
T ss_pred EEE-EECCCCCCHHHHHH---------------HHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcC-------hHH
Confidence 355 66888866555544 3557788899988777666555544445689888764 345
Q ss_pred HHHHHHHHhccCCcEEEEEeC
Q 007641 472 KLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 472 ~lL~El~RvLKPGG~Lvis~p 492 (595)
-.+.++...+.+-|.-+...+
T Consensus 59 ~~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 59 SYYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred HHHHHHHHHhhhcCCCEEEeC
Confidence 677788888888887665543
No 335
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=67.73 E-value=25 Score=36.56 Aligned_cols=90 Identities=21% Similarity=0.173 Sum_probs=49.3
Q ss_pred CCCEEEEECCC-CchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC------CCCCCCCCceeEE
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT------ERLPFPGIVFDAV 457 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~------~~LPfpd~sFDlV 457 (595)
++.+||-.|+| .|..+..++++ .|++++... ....++++.+...++..... ..+ .+.+.||+|
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~-----~~~~~~~~~g~~~vi~~~~~~~~~~i~~~-~~~~~~d~v 240 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNP-----ERLDLAKEAGATDIINPKNGDIVEQILEL-TGGRGVDCV 240 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCH-----HHHHHHHHhCCcEEEcCCcchHHHHHHHH-cCCCCCcEE
Confidence 56788887765 34555555553 355554432 23334444443222211110 111 123568988
Q ss_pred EecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 458 ~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
+-.. .....+..+.+.|+++|.|+...
T Consensus 241 ld~~-------g~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 241 IEAV-------GFEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred EEcc-------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 8532 11257888999999999998764
No 336
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=67.18 E-value=36 Score=37.18 Aligned_cols=100 Identities=21% Similarity=0.230 Sum_probs=57.4
Q ss_pred CCCEEEEECCCCch----hHHHHhhC-------CcEEEeC----CchhHHHH---HHHHHHHcCCCeeEeec--C-CCCC
Q 007641 389 RTRVVLDVGCGVAS----FGGFLFDR-------GVLTMSF----APKDEHEA---QVQFALERGIPAISAVM--G-TERL 447 (595)
Q Consensus 389 ~~~rVLDIGCGtG~----~a~~La~r-------~V~giDi----sp~di~~a---qvq~A~ergi~~~~~v~--d-~~~L 447 (595)
..-.|+|+|.|.|. +...|+.+ .|++|+. ....+... ..++|+..|++..+... . .+.+
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 45689999999996 44445544 6899988 44333333 34577888998766553 1 2222
Q ss_pred -----CCCCCceeEEEecccCccccc--------CHHHHHHHHHHhccCCcEEEEE
Q 007641 448 -----PFPGIVFDAVHCARCRVPWHI--------EGGKLLLELNRVLRPGGFFIWS 490 (595)
Q Consensus 448 -----Pfpd~sFDlV~~~~c~v~~h~--------d~~~lL~El~RvLKPGG~Lvis 490 (595)
....+-+=+|.|.. -++|+ ++...+....|-|+|.-+.++-
T Consensus 190 ~~~~l~~~~~E~laVn~~~--~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 190 DPSMLRLRPGEALAVNCMF--QLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred CHHHhCccCCcEEEEEeeh--hhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 22223333333332 22332 1344566777899999555543
No 337
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=66.64 E-value=27 Score=37.19 Aligned_cols=93 Identities=15% Similarity=0.097 Sum_probs=52.0
Q ss_pred CCCCEEEEECCC-CchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC-CC----C-CCCCCceeE
Q 007641 388 KRTRVVLDVGCG-VASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT-ER----L-PFPGIVFDA 456 (595)
Q Consensus 388 ~~~~rVLDIGCG-tG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~-~~----L-Pfpd~sFDl 456 (595)
.++.+||=+|+| .|.++..+++. .|++++.+ ..+.+++++.|...++..... .. + .+..+.+|+
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~-----~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~ 257 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDIN-----EDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDY 257 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCE
Confidence 357888888875 33344444542 46677665 334556666665432211110 00 0 011245898
Q ss_pred EEecccCcccccCHHHHHHHHHHhccCC-cEEEEEeC
Q 007641 457 VHCARCRVPWHIEGGKLLLELNRVLRPG-GFFIWSAT 492 (595)
Q Consensus 457 V~~~~c~v~~h~d~~~lL~El~RvLKPG-G~Lvis~p 492 (595)
|+-.- .....+..+.+.|+|| |.+++...
T Consensus 258 vid~~-------g~~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 258 SFECT-------GNADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred EEECC-------CChHHHHHHHHhcccCCCEEEEEcC
Confidence 88532 1135778889999986 99987753
No 338
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=66.50 E-value=30 Score=36.03 Aligned_cols=91 Identities=22% Similarity=0.160 Sum_probs=51.5
Q ss_pred CCCEEEEECCCC-chhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC---CCC--CCCCCceeEEEe
Q 007641 389 RTRVVLDVGCGV-ASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT---ERL--PFPGIVFDAVHC 459 (595)
Q Consensus 389 ~~~rVLDIGCGt-G~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~---~~L--Pfpd~sFDlV~~ 459 (595)
++.+||-+|+|. |..+..|++. .|+++..+ ..+..+++..+...++..... ..+ -.+...+|+|+.
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s-----~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld 233 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKARGARVIVVDID-----DERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVID 233 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCC-----HHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEE
Confidence 577899998763 5566666664 45555433 223344445553322211110 111 013345899986
Q ss_pred cccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 460 ~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
.. .....+..+.+.|+++|.++...
T Consensus 234 ~~-------g~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 234 AT-------GNPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CC-------CCHHHHHHHHHHHhcCCEEEEEc
Confidence 32 12356788999999999998654
No 339
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=66.49 E-value=31 Score=36.25 Aligned_cols=91 Identities=24% Similarity=0.252 Sum_probs=52.3
Q ss_pred CCCEEEEECCC-CchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC---CCC-CC-CCCceeEEE
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT---ERL-PF-PGIVFDAVH 458 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~---~~L-Pf-pd~sFDlV~ 458 (595)
++.+||=.|+| .|.++..+++. .|++++..+ .....++..|....+..... ..+ .+ ....+|+|+
T Consensus 166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~-----~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vl 240 (351)
T cd08285 166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRP-----NRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVI 240 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH-----HHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEE
Confidence 57788888875 34444555553 366666653 23455556665433221110 000 11 224589888
Q ss_pred ecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 459 CARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 459 ~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
... .....+..+.++|+++|+++...
T Consensus 241 d~~-------g~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 241 IAG-------GGQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred ECC-------CCHHHHHHHHHHhhcCCEEEEec
Confidence 532 11357889999999999998654
No 340
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=65.77 E-value=10 Score=42.46 Aligned_cols=64 Identities=16% Similarity=0.177 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcccccCC--CCCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCC
Q 007641 371 LHYIDFIQESVPDVAWG--KRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGI 435 (595)
Q Consensus 371 ~~yid~L~~~L~~l~~~--~~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi 435 (595)
..|..-|...+...... .....|||||.|||.++.+.++. .|+++++-..|...|. .+....|.
T Consensus 46 iky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~ar-kI~~kng~ 114 (636)
T KOG1501|consen 46 IKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLAR-KIMHKNGM 114 (636)
T ss_pred HHHHHHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHH-HHHhcCCC
Confidence 45556666666543222 12346899999999998887775 6889988777765443 44334443
No 341
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=64.97 E-value=40 Score=34.67 Aligned_cols=84 Identities=19% Similarity=0.151 Sum_probs=49.4
Q ss_pred CCCEEEEECCCCchhHHHHhh---C---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEeccc
Q 007641 389 RTRVVLDVGCGVASFGGFLFD---R---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARC 462 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~---r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c 462 (595)
++.+||=+|+ |.++..+++ . .|+++..++ .+..+++..|....+... .. .....||+|+-..
T Consensus 155 ~g~~vlV~g~--g~vg~~~~q~a~~~G~~vi~~~~~~-----~~~~~~~~~g~~~~~~~~---~~-~~~~~~d~vid~~- 222 (319)
T cd08242 155 PGDKVAVLGD--GKLGLLIAQVLALTGPDVVLVGRHS-----EKLALARRLGVETVLPDE---AE-SEGGGFDVVVEAT- 222 (319)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCCeEEEEcCCH-----HHHHHHHHcCCcEEeCcc---cc-ccCCCCCEEEECC-
Confidence 4678888875 455544433 2 455555442 344556666654322221 11 2335689888632
Q ss_pred CcccccCHHHHHHHHHHhccCCcEEEEE
Q 007641 463 RVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (595)
Q Consensus 463 ~v~~h~d~~~lL~El~RvLKPGG~Lvis 490 (595)
.....+..+.+.|+++|.+++.
T Consensus 223 ------g~~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 223 ------GSPSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred ------CChHHHHHHHHHhhcCCEEEEE
Confidence 1235677888999999999974
No 342
>KOG2730 consensus Methylase [General function prediction only]
Probab=64.91 E-value=5 Score=41.08 Aligned_cols=92 Identities=23% Similarity=0.257 Sum_probs=50.7
Q ss_pred CCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCe--eEeecCCC----CCCCCCCceeEEEecc
Q 007641 390 TRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPA--ISAVMGTE----RLPFPGIVFDAVHCAR 461 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~~--~~~v~d~~----~LPfpd~sFDlV~~~~ 461 (595)
..+|+|.-||.|..+..++.+ .|+++|++|.-+.-|. ..|.--|++- .+..+|.. .|.|.-..+|+|+.+.
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~Ak-hNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACAR-HNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHh-ccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence 568999999999877766664 7899999986543332 2233336652 33444422 2333333456666554
Q ss_pred cCccccc--CHHHHHHHHHHhccCCc
Q 007641 462 CRVPWHI--EGGKLLLELNRVLRPGG 485 (595)
Q Consensus 462 c~v~~h~--d~~~lL~El~RvLKPGG 485 (595)
+|.- ....-+-.+...+.|-|
T Consensus 174 ---pwggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 174 ---PWGGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred ---CCCCcchhhhhhhhhhhhcchhH
Confidence 3332 11233334445555554
No 343
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=64.74 E-value=1.8e+02 Score=30.20 Aligned_cols=101 Identities=15% Similarity=0.059 Sum_probs=58.5
Q ss_pred CCEEEEECCCCchhHHHHhhC-CcEEEeCCchhHHHHHHHHHHHcCC----CeeEeecCCC-----CC---CCCCCceeE
Q 007641 390 TRVVLDVGCGVASFGGFLFDR-GVLTMSFAPKDEHEAQVQFALERGI----PAISAVMGTE-----RL---PFPGIVFDA 456 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r-~V~giDisp~di~~aqvq~A~ergi----~~~~~v~d~~-----~L---Pfpd~sFDl 456 (595)
...|+.+|||-=..+..|... ++..++++-.++.....+...+.+. ...++..+.. .| .|....-=+
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl 161 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTA 161 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCee
Confidence 457999999988777777543 5778888766655555444443321 2233333322 11 121122223
Q ss_pred EEecccCccccc--CHHHHHHHHHHhccCCcEEEEEe
Q 007641 457 VHCARCRVPWHI--EGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 457 V~~~~c~v~~h~--d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
++ ..|++.+.. ....+|..+.+...||+.+++..
T Consensus 162 ~i-~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~ 197 (260)
T TIGR00027 162 WL-WEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDY 197 (260)
T ss_pred ee-ecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 44 344443332 23678888988888999999864
No 344
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=64.61 E-value=84 Score=30.54 Aligned_cols=93 Identities=16% Similarity=0.044 Sum_probs=56.1
Q ss_pred CCCEEEEECCCCchhHHHH---hhCCcEEEeCCchhHHHHHHHHHHHcCCC-eeEeecC-CCCCC-CCCCceeEEEeccc
Q 007641 389 RTRVVLDVGCGVASFGGFL---FDRGVLTMSFAPKDEHEAQVQFALERGIP-AISAVMG-TERLP-FPGIVFDAVHCARC 462 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~L---a~r~V~giDisp~di~~aqvq~A~ergi~-~~~~v~d-~~~LP-fpd~sFDlV~~~~c 462 (595)
...+|+=|||=+-.....- ....++.+|++. +++. -+.+ .++.... ...+| .-.++||+|++-.+
T Consensus 25 ~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~--------RF~~-~~~~~F~fyD~~~p~~~~~~l~~~~d~vv~DPP 95 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDR--------RFEQ-FGGDEFVFYDYNEPEELPEELKGKFDVVVIDPP 95 (162)
T ss_pred CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecc--------hHHh-cCCcceEECCCCChhhhhhhcCCCceEEEECCC
Confidence 3679999999876655444 223788899974 3443 2322 2332222 23344 11578999999875
Q ss_pred CcccccCH-HHHHHHHHHhccCCcEEEEEeC
Q 007641 463 RVPWHIEG-GKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 463 ~v~~h~d~-~~lL~El~RvLKPGG~Lvis~p 492 (595)
++. .+. ..+..-+.-++|+++.++++..
T Consensus 96 Fl~--~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 96 FLS--EECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred CCC--HHHHHHHHHHHHHHhCccceEEEecH
Confidence 421 122 3445566666789899888753
No 345
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=64.34 E-value=22 Score=31.30 Aligned_cols=77 Identities=18% Similarity=0.081 Sum_probs=47.2
Q ss_pred CEEEEECCCCchhHHHHhhCCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCcccccCH
Q 007641 391 RVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIEG 470 (595)
Q Consensus 391 ~rVLDIGCGtG~~a~~La~r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h~d~ 470 (595)
.+|| |-||+|.-+..|+. .+.+.+.++|+++.+.......++-....||+|+... ..
T Consensus 4 ~~IL-l~C~~G~sSS~l~~---------------k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~p-------qi 60 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVN---------------KMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAP-------QV 60 (95)
T ss_pred cEEE-EECCCchhHHHHHH---------------HHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECc-------hH
Confidence 4677 67999965554443 2346678889988777666544432224589998864 23
Q ss_pred HHHHHHHHHhccCCcEEEEE
Q 007641 471 GKLLLELNRVLRPGGFFIWS 490 (595)
Q Consensus 471 ~~lL~El~RvLKPGG~Lvis 490 (595)
...+.++...+.+-|.=+..
T Consensus 61 ~~~~~~i~~~~~~~~ipv~~ 80 (95)
T TIGR00853 61 AYMLPDLKKETDKKGIPVEV 80 (95)
T ss_pred HHHHHHHHHHhhhcCCCEEE
Confidence 34566677666654443333
No 346
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=64.32 E-value=46 Score=34.34 Aligned_cols=86 Identities=19% Similarity=0.165 Sum_probs=47.2
Q ss_pred CCCEEEEECCC-CchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCc
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v 464 (595)
++.+||=.||| .|.++..++++ .|++++-+. ....++...|....+.. ... +...+|+++..-
T Consensus 167 ~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~-----~~~~~~~~~g~~~~~~~---~~~--~~~~vD~vi~~~--- 233 (329)
T cd08298 167 PGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSG-----EHQELARELGADWAGDS---DDL--PPEPLDAAIIFA--- 233 (329)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCCh-----HHHHHHHHhCCcEEecc---Ccc--CCCcccEEEEcC---
Confidence 46677778765 22233333332 455554442 24455555564322211 111 234588877531
Q ss_pred ccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 465 PWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 465 ~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
.....+..+.+.|+++|.+++..
T Consensus 234 ----~~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 234 ----PVGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred ----CcHHHHHHHHHHhhcCCEEEEEc
Confidence 11257889999999999999764
No 347
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=64.17 E-value=13 Score=37.89 Aligned_cols=33 Identities=9% Similarity=0.216 Sum_probs=25.0
Q ss_pred CCEEEEECCCCchhHHHHhhC------------CcEEEeCCchhH
Q 007641 390 TRVVLDVGCGVASFGGFLFDR------------GVLTMSFAPKDE 422 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r------------~V~giDisp~di 422 (595)
.-+|+++|+|.|.++..+++. .++.++++|...
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~ 63 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLR 63 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCH
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHH
Confidence 368999999999999888762 588999998753
No 348
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=63.98 E-value=25 Score=37.53 Aligned_cols=92 Identities=24% Similarity=0.250 Sum_probs=58.2
Q ss_pred CCCCEEEEECC--CCchhHHHHhhC-C--cEEEeCCchhHHHHHHHHHHHcCCCeeEeecC---CCCC--CCCCCceeEE
Q 007641 388 KRTRVVLDVGC--GVASFGGFLFDR-G--VLTMSFAPKDEHEAQVQFALERGIPAISAVMG---TERL--PFPGIVFDAV 457 (595)
Q Consensus 388 ~~~~rVLDIGC--GtG~~a~~La~r-~--V~giDisp~di~~aqvq~A~ergi~~~~~v~d---~~~L--Pfpd~sFDlV 457 (595)
+++.+||=.|+ |.|.++..|+++ + ++++--+. ....++++.|....+...+ ...+ ......+|+|
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~-----~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv 215 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSS-----EKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVV 215 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCH-----HHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEE
Confidence 35889999984 577888888885 3 44444332 2334677777665443211 1111 1122359999
Q ss_pred EecccCcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 458 ~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
+..- ....+....+.|+++|.++....
T Consensus 216 ~D~v--------G~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 216 LDTV--------GGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred EECC--------CHHHHHHHHHHhccCCEEEEEec
Confidence 8742 34677789999999999998754
No 349
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=63.19 E-value=9.1 Score=39.37 Aligned_cols=69 Identities=23% Similarity=0.147 Sum_probs=35.5
Q ss_pred CEEEEECCCCchhHHHHhh--CCcEEEeCCchhHHHHHHHHHHHc-----CC------CeeEeecCC-CCCCCCCCceeE
Q 007641 391 RVVLDVGCGVASFGGFLFD--RGVLTMSFAPKDEHEAQVQFALER-----GI------PAISAVMGT-ERLPFPGIVFDA 456 (595)
Q Consensus 391 ~rVLDIGCGtG~~a~~La~--r~V~giDisp~di~~aqvq~A~er-----gi------~~~~~v~d~-~~LPfpd~sFDl 456 (595)
.+|||.=+|-|.-+.-|+. ..|++++-+|... +.++.+..+ .. .+.+...+. .-|..++.+||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia--~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIA--ALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHH--HHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHH--HHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence 4899999999987766655 4899999998642 222222211 11 123344443 445566789999
Q ss_pred EEecc
Q 007641 457 VHCAR 461 (595)
Q Consensus 457 V~~~~ 461 (595)
|++-.
T Consensus 155 VY~DP 159 (234)
T PF04445_consen 155 VYFDP 159 (234)
T ss_dssp EEE--
T ss_pred EEECC
Confidence 99976
No 350
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=62.97 E-value=36 Score=36.33 Aligned_cols=92 Identities=12% Similarity=0.043 Sum_probs=52.9
Q ss_pred CCCCEEEEECCC-CchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCC-CC-----CCCCCceeE
Q 007641 388 KRTRVVLDVGCG-VASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTE-RL-----PFPGIVFDA 456 (595)
Q Consensus 388 ~~~~rVLDIGCG-tG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~-~L-----Pfpd~sFDl 456 (595)
.++.+||=+|+| .|.++..+++. .|++++.++ .+.++++..|....+...... .+ .+..+.+|+
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~-----~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~ 259 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINP-----DKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDY 259 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH-----HHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcE
Confidence 357889988875 33444445542 477777763 345566666654332211110 00 011235898
Q ss_pred EEecccCcccccCHHHHHHHHHHhccCC-cEEEEEe
Q 007641 457 VHCARCRVPWHIEGGKLLLELNRVLRPG-GFFIWSA 491 (595)
Q Consensus 457 V~~~~c~v~~h~d~~~lL~El~RvLKPG-G~Lvis~ 491 (595)
|+-.- .....+..+.++|+++ |.+++..
T Consensus 260 vid~~-------g~~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 260 TFECI-------GNVKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred EEECC-------CChHHHHHHHHhhccCCCeEEEEc
Confidence 88532 1135777888999997 9998764
No 351
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=62.49 E-value=26 Score=37.48 Aligned_cols=93 Identities=12% Similarity=0.028 Sum_probs=53.8
Q ss_pred CCCCEEEEECCC-CchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecC-CC----CC-CCCCCceeE
Q 007641 388 KRTRVVLDVGCG-VASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMG-TE----RL-PFPGIVFDA 456 (595)
Q Consensus 388 ~~~~rVLDIGCG-tG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d-~~----~L-Pfpd~sFDl 456 (595)
.++.+||=+||| .|.++..+++. .|++++.++ .+.+++++.|....+...+ .. .+ ....+.+|+
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~-----~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~ 258 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINP-----AKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDY 258 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH-----HHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCE
Confidence 357889999985 34455555552 477777663 3456666667643332111 00 00 011125888
Q ss_pred EEecccCcccccCHHHHHHHHHHhccCC-cEEEEEeC
Q 007641 457 VHCARCRVPWHIEGGKLLLELNRVLRPG-GFFIWSAT 492 (595)
Q Consensus 457 V~~~~c~v~~h~d~~~lL~El~RvLKPG-G~Lvis~p 492 (595)
|+-.- .....+..+.++|++| |.+++...
T Consensus 259 vid~~-------G~~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 259 SFECI-------GNVNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred EEECC-------CCHHHHHHHHHHhhcCCCeEEEEec
Confidence 87532 1235678888999997 99887653
No 352
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=62.25 E-value=47 Score=34.78 Aligned_cols=92 Identities=20% Similarity=0.246 Sum_probs=50.5
Q ss_pred CCCCEEEEECCCC-chhHHHHhhC---C-cEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCC------CC--CCCCCce
Q 007641 388 KRTRVVLDVGCGV-ASFGGFLFDR---G-VLTMSFAPKDEHEAQVQFALERGIPAISAVMGTE------RL--PFPGIVF 454 (595)
Q Consensus 388 ~~~~rVLDIGCGt-G~~a~~La~r---~-V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~------~L--Pfpd~sF 454 (595)
.++.+||-.|+|. |.++..|++. . |+++.-+.. +..++++.+...++...... .+ ......|
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~-----~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPS-----RLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGP 235 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHH-----HHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCC
Confidence 3577888887653 4455555553 3 555544422 33444444543322211100 00 1233458
Q ss_pred eEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 455 DAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 455 DlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
|+|+-.. .....+..+.++|+++|.|+...
T Consensus 236 d~vld~~-------g~~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 236 DVVIECT-------GAESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CEEEECC-------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 9998532 11247788999999999998764
No 353
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=61.26 E-value=47 Score=34.60 Aligned_cols=91 Identities=18% Similarity=0.165 Sum_probs=50.2
Q ss_pred CCCEEEEECCCC-chhHHHHhhC---C-cEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC--CC-CCC-CCCceeEEEe
Q 007641 389 RTRVVLDVGCGV-ASFGGFLFDR---G-VLTMSFAPKDEHEAQVQFALERGIPAISAVMGT--ER-LPF-PGIVFDAVHC 459 (595)
Q Consensus 389 ~~~rVLDIGCGt-G~~a~~La~r---~-V~giDisp~di~~aqvq~A~ergi~~~~~v~d~--~~-LPf-pd~sFDlV~~ 459 (595)
++.+||-.|+|. |.++..+++. . |+++.-+. .+..++...+...++..... .. ..+ +...||+|+.
T Consensus 159 ~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~-----~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld 233 (343)
T cd08236 159 LGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDD-----EKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIE 233 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCH-----HHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEE
Confidence 567898888653 4455555553 3 55555442 23344444454222211110 00 011 2234898885
Q ss_pred cccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 460 ~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
.. .....+..+.++|+++|.++...
T Consensus 234 ~~-------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 234 AA-------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CC-------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 31 22457788999999999998765
No 354
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=60.98 E-value=33 Score=36.49 Aligned_cols=92 Identities=14% Similarity=-0.004 Sum_probs=47.5
Q ss_pred CCCEEEEECCC-CchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCc
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v 464 (595)
++.+||=+|+| .|.++..+++. .|++++.++. .....++..|....+.......+.-....+|+|+-.-
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~----~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~--- 252 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDK----KREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTV--- 252 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHH----HHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECC---
Confidence 56788877764 44455555553 4555555432 1112223345432221111111100012478887531
Q ss_pred ccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 465 PWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 465 ~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
.....+..+.++|++||++++..
T Consensus 253 ----g~~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 253 ----PVFHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred ----CchHHHHHHHHHhccCCEEEEEC
Confidence 11356777889999999999865
No 355
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=60.96 E-value=35 Score=35.14 Aligned_cols=90 Identities=17% Similarity=0.074 Sum_probs=53.1
Q ss_pred CCCEEEEECC--CCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC---CCC-CCCCCceeEEEe
Q 007641 389 RTRVVLDVGC--GVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT---ERL-PFPGIVFDAVHC 459 (595)
Q Consensus 389 ~~~rVLDIGC--GtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~---~~L-Pfpd~sFDlV~~ 459 (595)
++.+||=.|+ |.|.++..|++. .|+++.-++ ....+++..|...++..... ..+ .+..+.||+|+-
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~-----~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld 217 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSD-----DKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFD 217 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEE
Confidence 5788988884 456666666663 455555442 23455666665433322110 000 111245898885
Q ss_pred cccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 460 ~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
.- . ...+..+.++|+++|.|+...
T Consensus 218 ~~-------g-~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 218 NV-------G-GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred CC-------C-HHHHHHHHHhhccCCEEEEEc
Confidence 32 1 256788999999999998764
No 356
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=60.92 E-value=27 Score=37.34 Aligned_cols=120 Identities=13% Similarity=0.162 Sum_probs=65.9
Q ss_pred CCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCC---CCCCceeEEEecccC
Q 007641 390 TRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP---FPGIVFDAVHCARCR 463 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LP---fpd~sFDlV~~~~c~ 463 (595)
..++||+=||.|.+..-|... -+.++|+.+..+. -+...... ..+...+...+. ++...+|+|+...+-
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~----ty~~n~~~-~~~~~~di~~~~~~~~~~~~~DvligGpPC 77 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVA----TYKANFPH-GDIILGDIKELDGEALRKSDVDVLIGGPPC 77 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHH----HHHHhCCC-CceeechHhhcChhhccccCCCEEEeCCCC
Confidence 458999999999988878775 4577788765322 22222221 222223322221 111179999976521
Q ss_pred ccccc--------CH-H---HHHHHHHHhccCCcEEEEEeC-CCCCcCchhHHHHHHHHHHHHHcCCE
Q 007641 464 VPWHI--------EG-G---KLLLELNRVLRPGGFFIWSAT-PVYQKLPEDVEIWNAMSQLIKAMCWE 518 (595)
Q Consensus 464 v~~h~--------d~-~---~lL~El~RvLKPGG~Lvis~p-p~~~~l~e~i~~w~~le~Lak~~Gw~ 518 (595)
-.+.. ++ . .-+.++...++| -+|++-.. .+... ....|..+...++.+||.
T Consensus 78 Q~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~gl~~~---~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 78 QDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVKGLLSS---KGQTFDEIKKELEELGYG 141 (328)
T ss_pred cchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCchHHhc---CchHHHHHHHHHHHcCCc
Confidence 11111 11 2 334456666788 44444322 11222 334688888999999987
No 357
>PF12553 DUF3742: Protein of unknown function (DUF3742); InterPro: IPR022213 This domain family is found in bacteria, and is approximately 50 amino acids in length. There is a single completely conserved residue Y that may be functionally important.
Probab=60.85 E-value=6.8 Score=31.29 Aligned_cols=17 Identities=12% Similarity=0.593 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHhhhcC
Q 007641 25 TVFVALCLVGVWMMTSS 41 (595)
Q Consensus 25 ~~~~~~~~~g~w~~~~~ 41 (595)
|+.+++.+|++||++++
T Consensus 2 aLll~f~~iaaw~~~~~ 18 (54)
T PF12553_consen 2 ALLLVFAAIAAWMARNP 18 (54)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 34477788999999988
No 358
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=60.26 E-value=63 Score=36.64 Aligned_cols=104 Identities=15% Similarity=0.095 Sum_probs=61.1
Q ss_pred CCCEEEEECCCCchhHHHHhh--------CCcEEEeCCchhHHHHHHHHHHHcCCC---eeEeecCCCCC-CC-CCCcee
Q 007641 389 RTRVVLDVGCGVASFGGFLFD--------RGVLTMSFAPKDEHEAQVQFALERGIP---AISAVMGTERL-PF-PGIVFD 455 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~--------r~V~giDisp~di~~aqvq~A~ergi~---~~~~v~d~~~L-Pf-pd~sFD 455 (595)
++..|.|.-||+|.+...... ..++|.++.+.+...+...... +++. ......+...- .+ ....||
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l-~~~~~~t~~~~~~dtl~~~d~~~~~~~D 295 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMIL-HNIDYANFNIINADTLTTKEWENENGFE 295 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHH-cCCCccccCcccCCcCCCccccccccCC
Confidence 467899999999998765432 1468888877765555443322 2221 11112222211 12 235689
Q ss_pred EEEecccCcc-c-----------------cc------CHHHHHHHHHHhccCCcEEEEEeCC
Q 007641 456 AVHCARCRVP-W-----------------HI------EGGKLLLELNRVLRPGGFFIWSATP 493 (595)
Q Consensus 456 lV~~~~c~v~-~-----------------h~------d~~~lL~El~RvLKPGG~Lvis~pp 493 (595)
+|+++..+-. | |. ....++..+..+|++||...+..+.
T Consensus 296 ~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~ 357 (501)
T TIGR00497 296 VVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFP 357 (501)
T ss_pred EEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecC
Confidence 8887652211 1 10 1247888899999999998777664
No 359
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=59.98 E-value=57 Score=34.39 Aligned_cols=90 Identities=20% Similarity=0.199 Sum_probs=49.0
Q ss_pred CCCEEEEECCC-CchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC---------CCCCCCCCce
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT---------ERLPFPGIVF 454 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~---------~~LPfpd~sF 454 (595)
++.+||=.|+| .|..+..+++. .|++++.++ ....+++..|...++..... ..+. ....|
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~-----~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~-~~~~~ 250 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSP-----ERLELAREFGADATIDIDELPDPQRRAIVRDIT-GGRGA 250 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH-----HHHHHHHHcCCCeEEcCcccccHHHHHHHHHHh-CCCCC
Confidence 56788888864 23333444442 455555442 23445555565432211110 0111 22458
Q ss_pred eEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 455 DAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 455 DlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
|+|+-.. .....+..+.++|+++|.|++..
T Consensus 251 d~vid~~-------g~~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 251 DVVIEAS-------GHPAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred cEEEECC-------CChHHHHHHHHHhccCCEEEEEc
Confidence 9888532 11356778899999999999765
No 360
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=59.91 E-value=59 Score=35.47 Aligned_cols=98 Identities=16% Similarity=0.073 Sum_probs=53.1
Q ss_pred CCCEEEEECCC-CchhHHHHhhC---C-cEEEeCCchhHHHHHHHHHHHcCCCeeEeecC--C-CCC-C-CCCCceeEEE
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR---G-VLTMSFAPKDEHEAQVQFALERGIPAISAVMG--T-ERL-P-FPGIVFDAVH 458 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r---~-V~giDisp~di~~aqvq~A~ergi~~~~~v~d--~-~~L-P-fpd~sFDlV~ 458 (595)
++.+||=+|+| .|.++..+++. . |+++|.+ .....++++.|...+..... . ..+ . .....+|+|+
T Consensus 185 ~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~-----~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dvvi 259 (393)
T TIGR02819 185 PGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLN-----PARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDCAV 259 (393)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCC-----HHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcEEE
Confidence 46677767775 33444445552 2 3444554 33556777777642211111 0 001 0 1223589888
Q ss_pred ecccCccc--------ccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 459 CARCRVPW--------HIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 459 ~~~c~v~~--------h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
-.-. ... .......|..+.++||+||.+++...
T Consensus 260 d~~G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 260 DCVG-FEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred ECCC-CccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 5321 110 01223588999999999999998764
No 361
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=59.14 E-value=52 Score=34.40 Aligned_cols=91 Identities=15% Similarity=0.049 Sum_probs=53.0
Q ss_pred CCCCEEEEECC--CCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHH-cCCCeeEeecCCCC----C-CCCCCceeE
Q 007641 388 KRTRVVLDVGC--GVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALE-RGIPAISAVMGTER----L-PFPGIVFDA 456 (595)
Q Consensus 388 ~~~~rVLDIGC--GtG~~a~~La~r---~V~giDisp~di~~aqvq~A~e-rgi~~~~~v~d~~~----L-Pfpd~sFDl 456 (595)
.++.+||=.|+ |.|.++..+++. .|+++..++ ....+++. .|....+....... + ....+.+|+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~-----~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~ 224 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSD-----EKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDI 224 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEE
Confidence 35789998886 466666666663 455555442 33455555 56543322111000 0 011246898
Q ss_pred EEecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 457 VHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 457 V~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
|+-.- . ...+..+.++|+++|.|++..
T Consensus 225 v~d~~-------g-~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 225 YFDNV-------G-GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred EEECC-------C-HHHHHHHHHHhccCcEEEEec
Confidence 87532 1 256788999999999999764
No 362
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=58.26 E-value=15 Score=40.51 Aligned_cols=52 Identities=23% Similarity=0.200 Sum_probs=34.8
Q ss_pred HHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHH
Q 007641 374 IDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEA 425 (595)
Q Consensus 374 id~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~a 425 (595)
++.|.+.+..+..-.+...|+|||.|.|.++.+|.=. .|.+||-+......|
T Consensus 138 i~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra 192 (476)
T KOG2651|consen 138 IRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERA 192 (476)
T ss_pred HHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHH
Confidence 3444444443333345789999999999999988764 678888775544333
No 363
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.33 E-value=46 Score=35.37 Aligned_cols=122 Identities=13% Similarity=0.196 Sum_probs=63.2
Q ss_pred EEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCC-CCceeEEEecccCccccc
Q 007641 393 VLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFP-GIVFDAVHCARCRVPWHI 468 (595)
Q Consensus 393 VLDIGCGtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfp-d~sFDlV~~~~c~v~~h~ 468 (595)
|||+-||.|.+..-|.+. -+.++|+++......+.++ +..+...|...+... -..+|+++....--.+..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~------~~~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ 74 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANF------GNKVPFGDITKISPSDIPDFDILLGGFPCQPFSI 74 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhC------CCCCCccChhhhhhhhCCCcCEEEecCCCcccch
Confidence 689999999988888775 3467888765332222221 112233444333211 124899987641111111
Q ss_pred --------CH-HHHHHHHHHhc---cCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEE
Q 007641 469 --------EG-GKLLLELNRVL---RPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSI 522 (595)
Q Consensus 469 --------d~-~~lL~El~RvL---KPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~ 522 (595)
+. ..++.++.|+| +|. +|++-..+-+.... ....+..+...++.+||.+...
T Consensus 75 ag~~~~~~d~r~~L~~~~~r~i~~~~P~-~~v~ENV~~l~~~~-~~~~~~~i~~~l~~~GY~v~~~ 138 (315)
T TIGR00675 75 AGKRKGFEDTRGTLFFEIVRILKEKKPK-FFLLENVKGLVSHD-KGRTFKVIIETLEELGYKVYYK 138 (315)
T ss_pred hcccCCCCCchhhHHHHHHHHHhhcCCC-EEEeeccHHHHhcc-cchHHHHHHHHHHhCCCEEEEE
Confidence 22 34555555555 775 33332211111111 1134677777788899986444
No 364
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=56.86 E-value=29 Score=38.14 Aligned_cols=59 Identities=22% Similarity=0.367 Sum_probs=39.6
Q ss_pred cCCCeeEeecC-CCC-C-CCCCCceeEEEecccCcccccC--HHHHHHHHHHhccCCcEEEEEeC
Q 007641 433 RGIPAISAVMG-TER-L-PFPGIVFDAVHCARCRVPWHIE--GGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 433 rgi~~~~~v~d-~~~-L-Pfpd~sFDlV~~~~c~v~~h~d--~~~lL~El~RvLKPGG~Lvis~p 492 (595)
.++..+..+.+ ... | -.++++||.++... .+-|..+ ....+.+|.|+++|||++++-..
T Consensus 272 ~~~drv~i~t~si~~~L~~~~~~s~~~~vL~D-~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa 335 (380)
T PF11899_consen 272 ARLDRVRIHTDSIEEVLRRLPPGSFDRFVLSD-HMDWMDPEQLNEEWQELARTARPGARVLWRSA 335 (380)
T ss_pred cCCCeEEEEeccHHHHHHhCCCCCeeEEEecc-hhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeC
Confidence 34455444444 222 2 24678999999876 3445432 26889999999999999998743
No 365
>PTZ00357 methyltransferase; Provisional
Probab=55.98 E-value=33 Score=40.67 Aligned_cols=94 Identities=10% Similarity=0.043 Sum_probs=56.3
Q ss_pred CEEEEECCCCchhHHHHhhC--------CcEEEeCCchhHHHHHHHHHHH-cC--------CCeeEeecCCCCCCCC---
Q 007641 391 RVVLDVGCGVASFGGFLFDR--------GVLTMSFAPKDEHEAQVQFALE-RG--------IPAISAVMGTERLPFP--- 450 (595)
Q Consensus 391 ~rVLDIGCGtG~~a~~La~r--------~V~giDisp~di~~aqvq~A~e-rg--------i~~~~~v~d~~~LPfp--- 450 (595)
-.|+=+|+|.|-+....++. .|++|+-.+..+.....+.... .+ ..+.++..|+..+..+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 36899999999776555442 6788888865432333332221 12 1245555665544222
Q ss_pred --------CCceeEEEecccCcccccCH---HHHHHHHHHhccC----CcE
Q 007641 451 --------GIVFDAVHCARCRVPWHIEG---GKLLLELNRVLRP----GGF 486 (595)
Q Consensus 451 --------d~sFDlV~~~~c~v~~h~d~---~~lL~El~RvLKP----GG~ 486 (595)
-+.+|+||+-. +--.-+. ...|..+.|.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSEL--LGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSEL--LGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhh--hcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 24799999843 2212222 6888889999987 776
No 366
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=55.77 E-value=75 Score=33.20 Aligned_cols=92 Identities=15% Similarity=0.108 Sum_probs=49.8
Q ss_pred CCCEEEEECCC-CchhHHHHhhC---C-cEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC---CCC--CCCCCceeEEE
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR---G-VLTMSFAPKDEHEAQVQFALERGIPAISAVMGT---ERL--PFPGIVFDAVH 458 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r---~-V~giDisp~di~~aqvq~A~ergi~~~~~v~d~---~~L--Pfpd~sFDlV~ 458 (595)
++.+||-.|+| .|..+..+++. . |++++-++ .....+.+.+...++..... ..+ ......||+|+
T Consensus 161 ~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~-----~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vl 235 (340)
T TIGR00692 161 SGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNE-----YRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFL 235 (340)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH-----HHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEE
Confidence 46777777764 33444445552 3 55554432 23344455565322211110 001 11234689988
Q ss_pred ecccCcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 459 CARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 459 ~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
-.. .....+..+.+.|+++|.|+....
T Consensus 236 d~~-------g~~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 236 EMS-------GAPKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred ECC-------CCHHHHHHHHHhhcCCCEEEEEcc
Confidence 632 123568889999999999987754
No 367
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=55.63 E-value=26 Score=30.76 Aligned_cols=80 Identities=18% Similarity=0.043 Sum_probs=47.0
Q ss_pred ECCCCchhHHHHhhCCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCcccccCHHHHHH
Q 007641 396 VGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLL 475 (595)
Q Consensus 396 IGCGtG~~a~~La~r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h~d~~~lL~ 475 (595)
+-||+|.-+..|++ ...+.+.++++++.+.......+.-....||+|++.. .....+.
T Consensus 4 ~~Cg~G~sTS~~~~---------------ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~P-------qv~~~~~ 61 (96)
T cd05564 4 LVCSAGMSTSILVK---------------KMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGP-------QVRYMLD 61 (96)
T ss_pred EEcCCCchHHHHHH---------------HHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEECh-------hHHHHHH
Confidence 55888865554443 2346677888887666665443432234689999865 3345666
Q ss_pred HHHHhccCCcE-EEEEeCCCCCc
Q 007641 476 ELNRVLRPGGF-FIWSATPVYQK 497 (595)
Q Consensus 476 El~RvLKPGG~-Lvis~pp~~~~ 497 (595)
++.+.+.+.+. +.+..+..|..
T Consensus 62 ~i~~~~~~~~~pv~~I~~~~Y~~ 84 (96)
T cd05564 62 EVKKKAAEYGIPVAVIDMMDYGM 84 (96)
T ss_pred HHHHHhccCCCcEEEcChHhccc
Confidence 77765544444 44444444543
No 368
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=54.66 E-value=43 Score=35.62 Aligned_cols=93 Identities=13% Similarity=0.115 Sum_probs=52.3
Q ss_pred CCCCEEEEECCC-CchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC-CC----C-CCCCCceeE
Q 007641 388 KRTRVVLDVGCG-VASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT-ER----L-PFPGIVFDA 456 (595)
Q Consensus 388 ~~~~rVLDIGCG-tG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~-~~----L-Pfpd~sFDl 456 (595)
.++.+||=+|+| .|.++..+++. .|++++.++ ....++++.|....+..... .. + ....+.+|+
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~-----~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~ 260 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNP-----SKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDY 260 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH-----HHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCE
Confidence 357889988875 33344444442 466776653 34556666665433221110 00 0 011235888
Q ss_pred EEecccCcccccCHHHHHHHHHHhccCC-cEEEEEeC
Q 007641 457 VHCARCRVPWHIEGGKLLLELNRVLRPG-GFFIWSAT 492 (595)
Q Consensus 457 V~~~~c~v~~h~d~~~lL~El~RvLKPG-G~Lvis~p 492 (595)
|+-.- .....+..+.+.|++| |.+++...
T Consensus 261 vid~~-------G~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 261 SFECT-------GNIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred EEECC-------CChHHHHHHHHHhhcCCCEEEEECc
Confidence 87531 1235777788999996 99987653
No 369
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=54.40 E-value=49 Score=34.49 Aligned_cols=88 Identities=11% Similarity=0.078 Sum_probs=51.1
Q ss_pred CCEEEEECC--CCchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHH-cCCCeeEeecCCCCC-----CCCCCceeEE
Q 007641 390 TRVVLDVGC--GVASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALE-RGIPAISAVMGTERL-----PFPGIVFDAV 457 (595)
Q Consensus 390 ~~rVLDIGC--GtG~~a~~La~r----~V~giDisp~di~~aqvq~A~e-rgi~~~~~v~d~~~L-----Pfpd~sFDlV 457 (595)
+.+||=.|+ |.|.++..+++. .|++++-++ ....+++. .|...++.... ..+ .+..+.+|+|
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~-----~~~~~~~~~lGa~~vi~~~~-~~~~~~i~~~~~~gvd~v 228 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSD-----EKCQLLKSELGFDAAINYKT-DNVAERLRELCPEGVDVY 228 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCH-----HHHHHHHHhcCCcEEEECCC-CCHHHHHHHHCCCCceEE
Confidence 378998886 466677666663 366665542 23344443 56543332211 110 0112469999
Q ss_pred EecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 458 ~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
+..- . ...+..+.++|++||.|+...
T Consensus 229 id~~---g-----~~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 229 FDNV---G-----GEISDTVISQMNENSHIILCG 254 (345)
T ss_pred EECC---C-----cHHHHHHHHHhccCCEEEEEe
Confidence 8532 1 123578899999999999764
No 370
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=53.61 E-value=85 Score=33.28 Aligned_cols=91 Identities=16% Similarity=0.126 Sum_probs=50.2
Q ss_pred CCCEEEEECCC-CchhHHHHhhC---C-cEEEeCCchhHHHHHHHHHHHcCCCeeEeecC--C-CCC-C-CCCCceeEEE
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR---G-VLTMSFAPKDEHEAQVQFALERGIPAISAVMG--T-ERL-P-FPGIVFDAVH 458 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r---~-V~giDisp~di~~aqvq~A~ergi~~~~~v~d--~-~~L-P-fpd~sFDlV~ 458 (595)
++.+||-.|+| .|..+..+++. . |++++-+. .+..++...++..++.... . ..+ . .+...||+|+
T Consensus 182 ~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~-----~~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~~~~vd~vl 256 (363)
T cd08279 182 PGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVP-----EKLELARRFGATHTVNASEDDAVEAVRDLTDGRGADYAF 256 (363)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCH-----HHHHHHHHhCCeEEeCCCCccHHHHHHHHcCCCCCCEEE
Confidence 46788888874 34454555553 3 55555442 2334444555432221110 0 001 1 1235689888
Q ss_pred ecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 459 CARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 459 ~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
... .....+..+.+.|+++|+|++..
T Consensus 257 d~~-------~~~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 257 EAV-------GRAATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred EcC-------CChHHHHHHHHHhhcCCeEEEEe
Confidence 532 11357788999999999998764
No 371
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=53.54 E-value=36 Score=30.57 Aligned_cols=87 Identities=9% Similarity=0.108 Sum_probs=53.0
Q ss_pred EEEEECCCCchhHHHHhhCCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCC--CCCceeEEEecccCcccccC
Q 007641 392 VVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF--PGIVFDAVHCARCRVPWHIE 469 (595)
Q Consensus 392 rVLDIGCGtG~~a~~La~r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPf--pd~sFDlV~~~~c~v~~h~d 469 (595)
+|| +-||.|..+..|+.+ ..+.+.++|+++.+.......++. ....||+|++.. +
T Consensus 3 kIL-lvCg~G~STSlla~k---------------~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~P-------Q 59 (104)
T PRK09590 3 KAL-IICAAGMSSSMMAKK---------------TTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSP-------Q 59 (104)
T ss_pred EEE-EECCCchHHHHHHHH---------------HHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEECh-------H
Confidence 455 669999766655443 346677889887766665444432 234589998864 3
Q ss_pred HHHHHHHHHHhccCCcEEE-EEeCCCCCcCchh
Q 007641 470 GGKLLLELNRVLRPGGFFI-WSATPVYQKLPED 501 (595)
Q Consensus 470 ~~~lL~El~RvLKPGG~Lv-is~pp~~~~l~e~ 501 (595)
....+.++...+.+.|.-+ +..+..|...+-+
T Consensus 60 i~~~~~~i~~~~~~~~ipv~~I~~~~Y~~~~~~ 92 (104)
T PRK09590 60 TKMYFKQFEEAGAKVGKPVVQIPPQAYIPIPMG 92 (104)
T ss_pred HHHHHHHHHHHhhhcCCCEEEeCHHHcCCCccC
Confidence 4456677777777666544 4444445544443
No 372
>PRK10083 putative oxidoreductase; Provisional
Probab=53.33 E-value=60 Score=33.69 Aligned_cols=93 Identities=18% Similarity=0.094 Sum_probs=49.7
Q ss_pred CCCCEEEEECCC-CchhHHHHhh-C----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecC--C-CCCCCCCCceeEEE
Q 007641 388 KRTRVVLDVGCG-VASFGGFLFD-R----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMG--T-ERLPFPGIVFDAVH 458 (595)
Q Consensus 388 ~~~~rVLDIGCG-tG~~a~~La~-r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d--~-~~LPfpd~sFDlV~ 458 (595)
.++.+||=+|+| .|..+..+++ . .|++++.++ .....+++.|...++.... . ..+.-....+|+|+
T Consensus 159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~-----~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vi 233 (339)
T PRK10083 159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRID-----ERLALAKESGADWVINNAQEPLGEALEEKGIKPTLII 233 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCH-----HHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEE
Confidence 357788889965 2334444444 2 245555542 3445556666543322111 0 11111112245666
Q ss_pred ecccCcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 459 CARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 459 ~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
... .....+..+.++|+++|.++....
T Consensus 234 d~~-------g~~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 234 DAA-------CHPSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred ECC-------CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 432 113578888999999999998754
No 373
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=53.24 E-value=1.5e+02 Score=30.73 Aligned_cols=43 Identities=21% Similarity=0.226 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEE
Q 007641 470 GGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWEL 519 (595)
Q Consensus 470 ~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~ 519 (595)
...+|..++..|.|||+++|.. |.. . ..-+++.+.....|...
T Consensus 191 T~~aLe~lyprl~~GGiIi~DD---Y~~--~--gcr~AvdeF~~~~gi~~ 233 (248)
T PF05711_consen 191 TKDALEFLYPRLSPGGIIIFDD---YGH--P--GCRKAVDEFRAEHGITD 233 (248)
T ss_dssp HHHHHHHHGGGEEEEEEEEESS---TTT--H--HHHHHHHHHHHHTT--S
T ss_pred HHHHHHHHHhhcCCCeEEEEeC---CCC--h--HHHHHHHHHHHHcCCCC
Confidence 3689999999999999999864 333 2 23456777777888654
No 374
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=53.13 E-value=67 Score=33.58 Aligned_cols=92 Identities=20% Similarity=0.190 Sum_probs=47.7
Q ss_pred CCCEEEEECCC-CchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCc
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v 464 (595)
++.+||=.||| .|..+..++++ .|++++.+.. ...++...+...++............+.+|+|+...
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~-----~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~--- 240 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPS-----KKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTV--- 240 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHH-----HHHHHHHcCCcEEecCcchhhhhhccCCceEEEECC---
Confidence 45667667763 33333444443 4555555432 334555555433222111100000135688888532
Q ss_pred ccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 465 PWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 465 ~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
. ....+..+.++|+++|.++....
T Consensus 241 g----~~~~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 241 S----ASHDLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred C----CcchHHHHHHHhcCCCEEEEEec
Confidence 1 11347788999999999997653
No 375
>PRK10458 DNA cytosine methylase; Provisional
Probab=53.00 E-value=2.5e+02 Score=31.90 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=31.8
Q ss_pred HHHHHHHHhccccc--CCCCCCEEEEECCCCchhHHHHhhC---CcEEEeCCch
Q 007641 372 HYIDFIQESVPDVA--WGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPK 420 (595)
Q Consensus 372 ~yid~L~~~L~~l~--~~~~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~ 420 (595)
.....|..+++... .....-+++|+=||.|.+..-|-.. -|.++|+++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~ 121 (467)
T PRK10458 68 AEFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKH 121 (467)
T ss_pred HHHHHHHHhcccCcccCcCCCceEEEeCcCccHHHHHHHHcCCEEEEEEechHH
Confidence 33455666554321 1223568999999999988888775 3566777654
No 376
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=52.63 E-value=68 Score=34.00 Aligned_cols=91 Identities=19% Similarity=0.106 Sum_probs=49.3
Q ss_pred CCCEEEEECCC-CchhHHHHhhC---C-cEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC---CCC--CCCCCceeEEE
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR---G-VLTMSFAPKDEHEAQVQFALERGIPAISAVMGT---ERL--PFPGIVFDAVH 458 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r---~-V~giDisp~di~~aqvq~A~ergi~~~~~v~d~---~~L--Pfpd~sFDlV~ 458 (595)
++.+||=.|+| .|..+..+++. . |++++-++ .+..++...++..++..... ..+ ......||+|+
T Consensus 187 ~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~-----~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~d~vl 261 (367)
T cd08263 187 PGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRD-----EKLAKAKELGATHTVNAAKEDAVAAIREITGGRGVDVVV 261 (367)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCH-----HHHHHHHHhCCceEecCCcccHHHHHHHHhCCCCCCEEE
Confidence 46677766654 33444444442 3 66665542 33445555554322211110 000 11235699998
Q ss_pred ecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 459 CARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 459 ~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
..- . ....+..+.++|+++|.|+...
T Consensus 262 d~v---g----~~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 262 EAL---G----KPETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred EeC---C----CHHHHHHHHHHHhcCCEEEEEc
Confidence 632 1 1136788999999999998764
No 377
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=52.63 E-value=13 Score=37.87 Aligned_cols=29 Identities=10% Similarity=0.188 Sum_probs=19.5
Q ss_pred ccCCcccceehhhhHHHHHHHHHHhhhcC
Q 007641 13 RSASSYCSTVTITVFVALCLVGVWMMTSS 41 (595)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~g~w~~~~~ 41 (595)
||=++--..|.|.|.+.|.+|=+|||...
T Consensus 9 rRK~N~iLNiaI~IV~lLIiiva~~lf~~ 37 (217)
T PF07423_consen 9 RRKTNKILNIAIGIVSLLIIIVAYQLFFG 37 (217)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhhheec
Confidence 34556667777777777777777776653
No 378
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=52.60 E-value=87 Score=27.31 Aligned_cols=100 Identities=22% Similarity=0.204 Sum_probs=56.3
Q ss_pred CCCchhHHHHhhC------CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC----CCCCCCCCceeEEEecccCcccc
Q 007641 398 CGVASFGGFLFDR------GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT----ERLPFPGIVFDAVHCARCRVPWH 467 (595)
Q Consensus 398 CGtG~~a~~La~r------~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~----~~LPfpd~sFDlV~~~~c~v~~h 467 (595)
||.|.++..+++. .|+.+|.++. .+..+...+..++...... ..+.+ ...|.|++.. . .
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~-----~~~~~~~~~~~~i~gd~~~~~~l~~a~i--~~a~~vv~~~---~-~ 72 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPE-----RVEELREEGVEVIYGDATDPEVLERAGI--EKADAVVILT---D-D 72 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHH-----HHHHHHHTTSEEEES-TTSHHHHHHTTG--GCESEEEEES---S-S
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcH-----HHHHHHhcccccccccchhhhHHhhcCc--cccCEEEEcc---C-C
Confidence 5556777776662 5899999854 3455667775544433321 22232 4588887753 1 1
Q ss_pred cCHHHHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEE
Q 007641 468 IEGGKLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELV 520 (595)
Q Consensus 468 ~d~~~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v 520 (595)
......+....|-|-|...++..... ....++++.+|...+
T Consensus 73 d~~n~~~~~~~r~~~~~~~ii~~~~~------------~~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 73 DEENLLIALLARELNPDIRIIARVND------------PENAELLRQAGADHV 113 (116)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEEESS------------HHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEECC------------HHHHHHHHHCCcCEE
Confidence 12234555666778888888876532 234556666776543
No 379
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.36 E-value=1.8e+02 Score=30.63 Aligned_cols=128 Identities=19% Similarity=0.125 Sum_probs=80.3
Q ss_pred CCCEEEEECCCCchhHHHHhhC------CcEEEeCCchhH--------HHHHHHHHHHcCCCeeEeecCCCCC----CCC
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR------GVLTMSFAPKDE--------HEAQVQFALERGIPAISAVMGTERL----PFP 450 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r------~V~giDisp~di--------~~aqvq~A~ergi~~~~~v~d~~~L----Pfp 450 (595)
...+||-+|=|.=+|+..|+.+ +|++..+...+. ....++.....|..++..+- ...+ .+.
T Consensus 56 ~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~I~h~Vd-v~sl~~~~~~~ 134 (282)
T KOG4174|consen 56 KKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGTILHGVD-VTSLKFHADLR 134 (282)
T ss_pred ccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCceEeccc-ceeEEeccccc
Confidence 3568999998888888888874 567776665441 12334444445665544332 2222 234
Q ss_pred CCceeEEEecccCcccccC-------------H-HHHHHHHHHhcc-CCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHc
Q 007641 451 GIVFDAVHCARCRVPWHIE-------------G-GKLLLELNRVLR-PGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAM 515 (595)
Q Consensus 451 d~sFDlV~~~~c~v~~h~d-------------~-~~lL~El~RvLK-PGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~ 515 (595)
-..||-|+.+++.---++. . ..+|..+..+|+ ..|.++++....|.+.+ ..+.-|++..
T Consensus 135 ~~~~d~IiFNFPH~G~g~~~e~d~~~i~~~qkL~rgFle~akemL~~edGeI~itlk~t~P~~~------W~ik~Lak~~ 208 (282)
T KOG4174|consen 135 LQRYDNIIFNFPHSGKGIKFEQDRNIIPLHQKLFRGFLESAKEMLKDEDGEIHITLKTTYPFNP------WNIKFLAKEF 208 (282)
T ss_pred ccccceEEEcCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccCCCCch------hhhhHhhhhc
Confidence 4679999987532211111 1 367778888999 89999998655455544 2567788889
Q ss_pred CCEEEEEe
Q 007641 516 CWELVSIS 523 (595)
Q Consensus 516 Gw~~v~~~ 523 (595)
|++++...
T Consensus 209 gl~L~~~s 216 (282)
T KOG4174|consen 209 GLTLLEDS 216 (282)
T ss_pred cccchhcc
Confidence 98877653
No 380
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=52.18 E-value=87 Score=32.66 Aligned_cols=91 Identities=13% Similarity=0.071 Sum_probs=50.2
Q ss_pred CCCEEEEECCC-CchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCC---CCCCceeEEEecc
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP---FPGIVFDAVHCAR 461 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LP---fpd~sFDlV~~~~ 461 (595)
++.+||=.|+| .|..+..+++. .|++++.+. ....++.+.|....+.... ..+. .....+|+|+...
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~-----~~~~~~~~~g~~~~i~~~~-~~~~~~~~~~~~~d~vi~~~ 236 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGS-----DKADLARKLGAHHYIDTSK-EDVAEALQELGGAKLILATA 236 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCh-----HHHHHHHHcCCcEEecCCC-ccHHHHHHhcCCCCEEEECC
Confidence 57789989854 23333334442 566666542 3445666666532221111 0100 0012478887521
Q ss_pred cCcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 462 CRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 462 c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
.....+..+.+.|+++|.++....
T Consensus 237 -------g~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 237 -------PNAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred -------CchHHHHHHHHHcccCCEEEEEec
Confidence 123578889999999999997653
No 381
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=51.86 E-value=87 Score=32.72 Aligned_cols=90 Identities=18% Similarity=0.157 Sum_probs=48.2
Q ss_pred CCCEEEEECCCC-chhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecC-----CCCCCCCCCceeEEE
Q 007641 389 RTRVVLDVGCGV-ASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMG-----TERLPFPGIVFDAVH 458 (595)
Q Consensus 389 ~~~rVLDIGCGt-G~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d-----~~~LPfpd~sFDlV~ 458 (595)
++.+||-.|+|. |.++..|++. .|++++-+ ......+.+.+...++.... ...+ .+.+.+|+|+
T Consensus 163 ~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~vd~vl 236 (341)
T cd05281 163 SGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPN-----PYRLELAKKMGADVVINPREEDVVEVKSV-TDGTGVDVVL 236 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCC-----HHHHHHHHHhCcceeeCcccccHHHHHHH-cCCCCCCEEE
Confidence 467777777652 4454555553 24454332 22333444555432221110 0111 1234689998
Q ss_pred ecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 459 CARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 459 ~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
... .....+..+.++|+++|.|++..
T Consensus 237 d~~-------g~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 237 EMS-------GNPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred ECC-------CCHHHHHHHHHHhccCCEEEEEc
Confidence 632 12356778899999999998764
No 382
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=51.71 E-value=79 Score=33.18 Aligned_cols=92 Identities=16% Similarity=0.105 Sum_probs=49.7
Q ss_pred CCCEEEEECCC-CchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC---CCC-C-CCCCceeEEE
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT---ERL-P-FPGIVFDAVH 458 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~---~~L-P-fpd~sFDlV~ 458 (595)
++.+||=.|+| .|.++..+++. .|++++.++ ....++.+.|....+..... ..+ . ...+.+|+|+
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~-----~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vi 246 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSE-----ARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSF 246 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH-----HHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEE
Confidence 56788888864 23344444442 345555443 23345555565433221110 001 0 1223489888
Q ss_pred ecccCcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 459 CARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 459 ~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
-.. .....+..+.++|++||.++....
T Consensus 247 d~~-------g~~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 247 DCA-------GVQATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred ECC-------CCHHHHHHHHHhccCCCEEEEEcc
Confidence 532 113567889999999999987653
No 383
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=50.36 E-value=71 Score=34.01 Aligned_cols=92 Identities=12% Similarity=0.110 Sum_probs=52.0
Q ss_pred CCCEEEEECCC-CchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC---CCC-CCCCCceeEEEe
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT---ERL-PFPGIVFDAVHC 459 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~---~~L-Pfpd~sFDlV~~ 459 (595)
++.+||=.|+| .|..+..+++. .|++++.++ ....++...+...++..... ..+ .+....||+|+-
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~-----~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld 260 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVD-----SRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALD 260 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH-----HHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEE
Confidence 56788888865 24454555553 367777663 23445555554322211110 000 011345898885
Q ss_pred cccCcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 460 ~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
.. . ....+..+.++|+++|.+++...
T Consensus 261 ~~---g----~~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 261 TT---G----VPAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred CC---C----CcHHHHHHHHHhccCCEEEEeCc
Confidence 32 1 12567889999999999998754
No 384
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=49.99 E-value=41 Score=37.35 Aligned_cols=85 Identities=14% Similarity=0.069 Sum_probs=50.4
Q ss_pred CCCEEEEECCCC-chhHHHHhh---CCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCc
Q 007641 389 RTRVVLDVGCGV-ASFGGFLFD---RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 389 ~~~rVLDIGCGt-G~~a~~La~---r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v 464 (595)
.+.+|+=+|+|. |...+.+++ ..|+++|.++.- ...|...|..+. ....+ . ...|+|++..
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r-----~~~A~~~G~~v~----~leea-l--~~aDVVItaT--- 258 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIR-----ALEAAMDGFRVM----TMEEA-A--KIGDIFITAT--- 258 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhh-----HHHHHhcCCEeC----CHHHH-H--hcCCEEEECC---
Confidence 478999999994 444444444 278889888642 123333443211 11111 1 2469988742
Q ss_pred ccccCHHHHHH-HHHHhccCCcEEEEEeC
Q 007641 465 PWHIEGGKLLL-ELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 465 ~~h~d~~~lL~-El~RvLKPGG~Lvis~p 492 (595)
....++. +...++|+|++|+....
T Consensus 259 ----G~~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 259 ----GNKDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred ----CCHHHHHHHHHhcCCCCcEEEEECC
Confidence 1234444 58889999999998754
No 385
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=49.15 E-value=81 Score=34.37 Aligned_cols=91 Identities=19% Similarity=0.143 Sum_probs=51.0
Q ss_pred CCCCEEEEEC-CC-CchhHHHHhhC------CcEEEeCCchhHHHHHHHHHHHc--------CCCeeEeecCC-CCC---
Q 007641 388 KRTRVVLDVG-CG-VASFGGFLFDR------GVLTMSFAPKDEHEAQVQFALER--------GIPAISAVMGT-ERL--- 447 (595)
Q Consensus 388 ~~~~rVLDIG-CG-tG~~a~~La~r------~V~giDisp~di~~aqvq~A~er--------gi~~~~~v~d~-~~L--- 447 (595)
.++.+||=+| +| .|.++..+++. .|++++.++. +++++++. |.......... ..+
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~-----r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~ 248 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDE-----RLARAQRLFPPEAASRGIELLYVNPATIDDLHAT 248 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHH-----HHHHHHHhccccccccCceEEEECCCccccHHHH
Confidence 3567888887 34 66677666664 4778887743 34455543 32211111100 110
Q ss_pred --C-CCCCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEE
Q 007641 448 --P-FPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (595)
Q Consensus 448 --P-fpd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis 490 (595)
. .....||+|+..- .....+....++|+++|.+++.
T Consensus 249 v~~~t~g~g~D~vid~~-------g~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 249 LMELTGGQGFDDVFVFV-------PVPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHHHhCCCCCCEEEEcC-------CCHHHHHHHHHHhccCCeEEEE
Confidence 0 1223588887631 1236778889999988876544
No 386
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=49.07 E-value=40 Score=36.46 Aligned_cols=94 Identities=15% Similarity=0.068 Sum_probs=59.1
Q ss_pred CCEEEEECCC-CchhHHHHhh---CCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCcc
Q 007641 390 TRVVLDVGCG-VASFGGFLFD---RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (595)
Q Consensus 390 ~~rVLDIGCG-tG~~a~~La~---r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~ 465 (595)
..+|.=||-| .|..+..++- ..|+.+|++..-+ .+.-...+..+.........+--.-...|+|+.. .+++
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl----~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIga-VLIp 242 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRL----RQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGA-VLIP 242 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHH----hhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEE-EEec
Confidence 4567778988 4566666665 4899999985321 1222222333333333222222122468999976 3455
Q ss_pred cccCHHHHHHHHHHhccCCcEEE
Q 007641 466 WHIEGGKLLLELNRVLRPGGFFI 488 (595)
Q Consensus 466 ~h~d~~~lL~El~RvLKPGG~Lv 488 (595)
-...|..+.+++...+|||.+++
T Consensus 243 gakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 243 GAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred CCCCceehhHHHHHhcCCCcEEE
Confidence 55577889999999999999988
No 387
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=48.90 E-value=39 Score=37.78 Aligned_cols=85 Identities=15% Similarity=0.101 Sum_probs=48.8
Q ss_pred CCCEEEEECCCC-chhHHHHhh---CCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCc
Q 007641 389 RTRVVLDVGCGV-ASFGGFLFD---RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 389 ~~~rVLDIGCGt-G~~a~~La~---r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v 464 (595)
.+++|+=+|+|. |.....++. ..|+++|+++.-. ..+...|..+. ....+ + ..+|+|+..-
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra-----~~A~~~G~~v~----~l~ea-l--~~aDVVI~aT--- 275 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICA-----LQAAMDGFRVM----TMEEA-A--ELGDIFVTAT--- 275 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhh-----HHHHhcCCEec----CHHHH-H--hCCCEEEECC---
Confidence 478999999983 322222222 2788888876421 22233343211 11111 1 2589998742
Q ss_pred ccccCHHHHHH-HHHHhccCCcEEEEEeC
Q 007641 465 PWHIEGGKLLL-ELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 465 ~~h~d~~~lL~-El~RvLKPGG~Lvis~p 492 (595)
....++. +..+.+|+|++++....
T Consensus 276 ----G~~~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 276 ----GNKDVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred ----CCHHHHHHHHHhcCCCCCEEEEcCC
Confidence 1233554 78899999999987754
No 388
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=47.95 E-value=83 Score=32.94 Aligned_cols=91 Identities=16% Similarity=0.179 Sum_probs=48.8
Q ss_pred CCCEEEEECCC-CchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC---CCC-CCCCCceeEEEe
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT---ERL-PFPGIVFDAVHC 459 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~---~~L-Pfpd~sFDlV~~ 459 (595)
++.+||-+|+| .|..+..+++. .|++++.++ .+...+...|+..++..... ..+ .+..+.+|+|+.
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vid 249 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDE-----AKLEAAKAAGADVVVNGSDPDAAKRIIKAAGGGVDAVID 249 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCH-----HHHHHHHHhCCcEEecCCCccHHHHHHHHhCCCCcEEEE
Confidence 46788888764 33344444442 455665543 23344445565322211110 000 011125888886
Q ss_pred cccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 460 ~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
.. .....+..+.+.|+++|+++...
T Consensus 250 ~~-------g~~~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 250 FV-------NNSATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred CC-------CCHHHHHHHHHHhhcCCeEEEEC
Confidence 32 12357889999999999999754
No 389
>PLN02702 L-idonate 5-dehydrogenase
Probab=47.45 E-value=1.2e+02 Score=32.16 Aligned_cols=92 Identities=15% Similarity=0.102 Sum_probs=51.7
Q ss_pred CCCEEEEECCC-CchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecC----C-CC---C-CCCCCce
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMG----T-ER---L-PFPGIVF 454 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d----~-~~---L-Pfpd~sF 454 (595)
++.+||=+|+| .|..+..++++ .|++++.+. .....++..+....+.... . .. + ....+.+
T Consensus 181 ~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (364)
T PLN02702 181 PETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDD-----ERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGI 255 (364)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH-----HHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCC
Confidence 46788888864 34444555552 356666542 2334455566554332210 0 00 1 0122458
Q ss_pred eEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 455 DAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 455 DlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
|+|+-.- .....+..+.+.|+++|.|++...
T Consensus 256 d~vid~~-------g~~~~~~~~~~~l~~~G~~v~~g~ 286 (364)
T PLN02702 256 DVSFDCV-------GFNKTMSTALEATRAGGKVCLVGM 286 (364)
T ss_pred CEEEECC-------CCHHHHHHHHHHHhcCCEEEEEcc
Confidence 9888632 113568899999999999987653
No 390
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=46.59 E-value=32 Score=37.25 Aligned_cols=96 Identities=17% Similarity=0.083 Sum_probs=55.1
Q ss_pred CCCEEEEECC-CCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeec-CCCCCCCCCCceeEEEecccC
Q 007641 389 RTRVVLDVGC-GVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVM-GTERLPFPGIVFDAVHCARCR 463 (595)
Q Consensus 389 ~~~rVLDIGC-GtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~-d~~~LPfpd~sFDlV~~~~c~ 463 (595)
++.+|-=+|. |.|.++..++.+ +|+++|-+...-.++ ....|.+..+... +...+----+++|.++-.-
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea----~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v-- 254 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEA----IKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTV-- 254 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHH----HHhcCcceeEEecCCHHHHHHHHHhhcCcceee--
Confidence 5777777774 589999888885 899999885432222 2334555433332 1111110113455443211
Q ss_pred cccccCHHHHHHHHHHhccCCcEEEEEeCC
Q 007641 464 VPWHIEGGKLLLELNRVLRPGGFFIWSATP 493 (595)
Q Consensus 464 v~~h~d~~~lL~El~RvLKPGG~Lvis~pp 493 (595)
... ....|.-+.++||++|.+++..-|
T Consensus 255 ~~~---a~~~~~~~~~~lk~~Gt~V~vg~p 281 (360)
T KOG0023|consen 255 SNL---AEHALEPLLGLLKVNGTLVLVGLP 281 (360)
T ss_pred eec---cccchHHHHHHhhcCCEEEEEeCc
Confidence 100 234566788999999999988644
No 391
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=46.16 E-value=27 Score=38.04 Aligned_cols=97 Identities=14% Similarity=0.041 Sum_probs=47.7
Q ss_pred CCCEEEEECCC-CchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCc
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v 464 (595)
+..+||=||+| .|..+...+.+ .|+++|..+.... +.+...+..+.........+.-.-..+|+|+..- .+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~----~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~-~~ 240 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLR----QLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAV-LI 240 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHH----HHHHhcCceeEeccCCHHHHHHHHccCCEEEEcc-cc
Confidence 45679999998 44444444442 6888888653211 1222222221111111111110013589999742 11
Q ss_pred ccccCHHHHHHHHHHhccCCcEEEEE
Q 007641 465 PWHIEGGKLLLELNRVLRPGGFFIWS 490 (595)
Q Consensus 465 ~~h~d~~~lL~El~RvLKPGG~Lvis 490 (595)
.-...+..+-.++.+.+|||++++-.
T Consensus 241 ~g~~~p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 241 PGAKAPKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred CCCCCCcCcCHHHHhcCCCCCEEEEE
Confidence 11111222346666778999888754
No 392
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=45.05 E-value=1.1e+02 Score=31.87 Aligned_cols=90 Identities=17% Similarity=0.102 Sum_probs=47.5
Q ss_pred CCCEEEEECCC-CchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC------CCCCCCCCceeEE
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT------ERLPFPGIVFDAV 457 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~------~~LPfpd~sFDlV 457 (595)
++.+||=.|+| .|..+..+++. .|++++.+. .+..+++..|...++..... ..+ .+...||+|
T Consensus 166 ~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~-----~~~~~~~~~g~~~~v~~~~~~~~~~i~~~-~~~~~~d~v 239 (345)
T cd08286 166 PGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDD-----NRLEVAKKLGATHTVNSAKGDAIEQVLEL-TDGRGVDVV 239 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH-----HHHHHHHHhCCCceeccccccHHHHHHHH-hCCCCCCEE
Confidence 46677767763 22233334442 356655542 23344555554322221110 111 123458988
Q ss_pred EecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 458 ~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
+..- .....+..+.+.|+++|.|+...
T Consensus 240 ld~~-------g~~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 240 IEAV-------GIPATFELCQELVAPGGHIANVG 266 (345)
T ss_pred EECC-------CCHHHHHHHHHhccCCcEEEEec
Confidence 8531 12346788889999999999764
No 393
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=44.89 E-value=1.1e+02 Score=31.92 Aligned_cols=91 Identities=15% Similarity=0.075 Sum_probs=50.7
Q ss_pred CCCEEEEECCCC-chhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC------CCCCCCCCceeEE
Q 007641 389 RTRVVLDVGCGV-ASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT------ERLPFPGIVFDAV 457 (595)
Q Consensus 389 ~~~rVLDIGCGt-G~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~------~~LPfpd~sFDlV 457 (595)
++.+||-.|+|. |.++..+++. .|++++.+ .....++.+.|...++..... ..+ .....+|+|
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~-----~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~-~~~~~~d~v 236 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVN-----EYRLELARKMGATRAVNVAKEDLRDVMAEL-GMTEGFDVG 236 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC-----HHHHHHHHHhCCcEEecCccccHHHHHHHh-cCCCCCCEE
Confidence 467777777652 4444445542 34555433 223345556665432211110 011 123458988
Q ss_pred EecccCcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 458 ~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
+... . ....+..+.++|+++|.+++...
T Consensus 237 ~d~~--g-----~~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 237 LEMS--G-----APSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred EECC--C-----CHHHHHHHHHHHhcCCEEEEEec
Confidence 8632 1 24577888999999999998764
No 394
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=44.75 E-value=1e+02 Score=31.58 Aligned_cols=90 Identities=20% Similarity=0.201 Sum_probs=51.4
Q ss_pred CCEEEEECC--CCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC--CCC-CCCCCceeEEEecc
Q 007641 390 TRVVLDVGC--GVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT--ERL-PFPGIVFDAVHCAR 461 (595)
Q Consensus 390 ~~rVLDIGC--GtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~--~~L-Pfpd~sFDlV~~~~ 461 (595)
+.+||=+|+ +.|..+..+++. .|++++.++ ....++++.|+..++...+. ..+ .+....+|+|+-..
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~-----~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~ 221 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKA-----DAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPV 221 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCH-----HHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECC
Confidence 568888887 244455555553 455555543 34455555665332221111 000 11234588887532
Q ss_pred cCcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 462 CRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 462 c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
. ...+..+.+.|+++|.++....
T Consensus 222 -------g-~~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 222 -------G-GKTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred -------c-HHHHHHHHHHhhcCCEEEEEee
Confidence 1 2567889999999999998764
No 395
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=44.47 E-value=1e+02 Score=32.05 Aligned_cols=88 Identities=26% Similarity=0.283 Sum_probs=50.0
Q ss_pred CCCEEEEECC--CCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCC---CC-CCCCceeEEEe
Q 007641 389 RTRVVLDVGC--GVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER---LP-FPGIVFDAVHC 459 (595)
Q Consensus 389 ~~~rVLDIGC--GtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~---LP-fpd~sFDlV~~ 459 (595)
++.+||=+|+ +.|..+..+++. .|++++-+ . +...+++.++... ....... .. .....||+|+.
T Consensus 177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~-----~-~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~d~vi~ 249 (350)
T cd08274 177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA-----A-KEEAVRALGADTV-ILRDAPLLADAKALGGEPVDVVAD 249 (350)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc-----h-hhHHHHhcCCeEE-EeCCCccHHHHHhhCCCCCcEEEe
Confidence 5789999997 344455555553 45555432 1 3455555665322 1111100 11 12346999886
Q ss_pred cccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 460 ~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
.. . ...+..+.++|+++|.++...
T Consensus 250 ~~---g-----~~~~~~~~~~l~~~G~~v~~g 273 (350)
T cd08274 250 VV---G-----GPLFPDLLRLLRPGGRYVTAG 273 (350)
T ss_pred cC---C-----HHHHHHHHHHhccCCEEEEec
Confidence 32 1 246788899999999998654
No 396
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=44.04 E-value=1e+02 Score=32.81 Aligned_cols=90 Identities=11% Similarity=0.001 Sum_probs=49.3
Q ss_pred CCCEEEEECCC-CchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC--------CCCCCCCCcee
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT--------ERLPFPGIVFD 455 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~--------~~LPfpd~sFD 455 (595)
++.+||=+|+| .|..+..+++. .|++++.+ ..+..++.+.|....+..... ..+ . .+.||
T Consensus 183 ~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~-----~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~-~-~~~~d 255 (365)
T cd05279 183 PGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDIN-----KDKFEKAKQLGATECINPRDQDKPIVEVLTEM-T-DGGVD 255 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHhCCCeecccccccchHHHHHHHH-h-CCCCc
Confidence 46788878764 22333334442 25565554 234455555565322211111 111 1 24589
Q ss_pred EEEecccCcccccCHHHHHHHHHHhcc-CCcEEEEEeC
Q 007641 456 AVHCARCRVPWHIEGGKLLLELNRVLR-PGGFFIWSAT 492 (595)
Q Consensus 456 lV~~~~c~v~~h~d~~~lL~El~RvLK-PGG~Lvis~p 492 (595)
+|+-.. . ....+..+.+.|+ ++|.+++...
T Consensus 256 ~vid~~---g----~~~~~~~~~~~l~~~~G~~v~~g~ 286 (365)
T cd05279 256 YAFEVI---G----SADTLKQALDATRLGGGTSVVVGV 286 (365)
T ss_pred EEEECC---C----CHHHHHHHHHHhccCCCEEEEEec
Confidence 888532 1 2357778899999 9999997753
No 397
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=43.90 E-value=1e+02 Score=31.16 Aligned_cols=90 Identities=23% Similarity=0.169 Sum_probs=52.8
Q ss_pred CCCEEEEECC--CCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC--CCC-CCCCCceeEEEec
Q 007641 389 RTRVVLDVGC--GVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT--ERL-PFPGIVFDAVHCA 460 (595)
Q Consensus 389 ~~~rVLDIGC--GtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~--~~L-Pfpd~sFDlV~~~ 460 (595)
++.+||=.|+ +.|..+..+++. .|+++..++ ....++...|+..++..... ..+ .+ .+.+|+|+..
T Consensus 142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~~~d~vl~~ 215 (320)
T cd08243 142 PGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSP-----ERAALLKELGADEVVIDDGAIAEQLRAA-PGGFDKVLEL 215 (320)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHhcCCcEEEecCccHHHHHHHh-CCCceEEEEC
Confidence 4678988886 355566666663 555555543 23455555665433221110 000 12 3568988853
Q ss_pred ccCcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 461 RCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 461 ~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
. . ...+.++.+.|+++|.|+....
T Consensus 216 ~---~-----~~~~~~~~~~l~~~g~~v~~g~ 239 (320)
T cd08243 216 V---G-----TATLKDSLRHLRPGGIVCMTGL 239 (320)
T ss_pred C---C-----hHHHHHHHHHhccCCEEEEEcc
Confidence 2 1 2568888999999999987653
No 398
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=42.55 E-value=1.2e+02 Score=30.18 Aligned_cols=74 Identities=23% Similarity=0.368 Sum_probs=46.6
Q ss_pred CCCCceeEEEecccCccccc-------------CHHHHHHHHHHhccCCcEEEEEeC-CCCC-----cC-----------
Q 007641 449 FPGIVFDAVHCARCRVPWHI-------------EGGKLLLELNRVLRPGGFFIWSAT-PVYQ-----KL----------- 498 (595)
Q Consensus 449 fpd~sFDlV~~~~c~v~~h~-------------d~~~lL~El~RvLKPGG~Lvis~p-p~~~-----~l----------- 498 (595)
...+..|+||++.|+ |.+ +...++..+..+|+|+-.|||..+ |+-. ++
T Consensus 46 l~gg~~DVIi~Ns~L--WDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~Pv~~~~~ggfl~~~~~~~~~~l 123 (183)
T cd01842 46 LEGGRLDLVIMNSCL--WDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMPVAEEIKGGFLLPELHDLSKSL 123 (183)
T ss_pred ecCCceeEEEEecce--ecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCCCCcCCcCceeccccccccccc
Confidence 345678999998864 433 124777788888899999998754 3211 11
Q ss_pred chhHH-HHHHHHHHHHHcCCEEEEEee
Q 007641 499 PEDVE-IWNAMSQLIKAMCWELVSISK 524 (595)
Q Consensus 499 ~e~i~-~w~~le~Lak~~Gw~~v~~~~ 524 (595)
+.++- ....-..++++.||.+.....
T Consensus 124 r~dv~eaN~~A~~va~~~~~dVlDLh~ 150 (183)
T cd01842 124 RYDVLEGNFYSATLAKCYGFDVLDLHY 150 (183)
T ss_pred hhHHHHHHHHHHHHHHHcCceeeehHH
Confidence 12222 224445678899998776543
No 399
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=42.09 E-value=36 Score=38.56 Aligned_cols=104 Identities=18% Similarity=0.167 Sum_probs=65.4
Q ss_pred CCEEEEECCCCchhHHHHhh----CCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecC-C---CCC---CCCCCceeEEE
Q 007641 390 TRVVLDVGCGVASFGGFLFD----RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMG-T---ERL---PFPGIVFDAVH 458 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~----r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d-~---~~L---Pfpd~sFDlV~ 458 (595)
...+|=||-|.|.+..+|.. ..++++.+.|.++..+...+.......+.+.+.+ . .++ --.+..||++.
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~ 375 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLM 375 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEE
Confidence 56788899998988877755 3899999999998888766654333222222221 1 111 11455799887
Q ss_pred ecccCcccc-c--CH-----HHHHHHHHHhccCCcEEEEEeCC
Q 007641 459 CARCRVPWH-I--EG-----GKLLLELNRVLRPGGFFIWSATP 493 (595)
Q Consensus 459 ~~~c~v~~h-~--d~-----~~lL~El~RvLKPGG~Lvis~pp 493 (595)
.---.-.-| . .+ ..+|..+..+|.|-|.|+|-.-.
T Consensus 376 ~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~ 418 (482)
T KOG2352|consen 376 VDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVT 418 (482)
T ss_pred EECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEec
Confidence 531000011 1 11 57888899999999999987543
No 400
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=41.77 E-value=25 Score=40.94 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=27.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CcEEEeCCch
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPK 420 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~ 420 (595)
.+...|||+||..|.+..-..+. -|+||||.|.
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 36789999999999998766663 6899999874
No 401
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=41.34 E-value=1.3e+02 Score=32.36 Aligned_cols=89 Identities=15% Similarity=0.134 Sum_probs=50.6
Q ss_pred CCCEEEEECCCCchhHHH---HhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecC---------CCCCCCCCC
Q 007641 389 RTRVVLDVGCGVASFGGF---LFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMG---------TERLPFPGI 452 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~---La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d---------~~~LPfpd~ 452 (595)
++.+||=.|+| .++.. +++. .|++++.++. ....+.+.|+..++.... ...+ ....
T Consensus 203 ~g~~VlV~g~g--~vG~~ai~lA~~~G~~~vi~~~~~~~-----~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~-~~g~ 274 (384)
T cd08265 203 PGAYVVVYGAG--PIGLAAIALAKAAGASKVIAFEISEE-----RRNLAKEMGADYVFNPTKMRDCLSGEKVMEV-TKGW 274 (384)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHHcCCCEEEEEcCCHH-----HHHHHHHcCCCEEEcccccccccHHHHHHHh-cCCC
Confidence 46778777764 44443 3332 3566655432 345556666644332211 1111 1234
Q ss_pred ceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 453 VFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 453 sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
.+|+|+... . .....+..+.++|+++|.|+...
T Consensus 275 gvDvvld~~---g---~~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 275 GADIQVEAA---G---APPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred CCCEEEECC---C---CcHHHHHHHHHHHHcCCEEEEEC
Confidence 589888632 1 22457888899999999999764
No 402
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=40.94 E-value=1.8e+02 Score=31.10 Aligned_cols=89 Identities=17% Similarity=0.097 Sum_probs=49.9
Q ss_pred CCCEEEEECC--CCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC-------------------
Q 007641 389 RTRVVLDVGC--GVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT------------------- 444 (595)
Q Consensus 389 ~~~rVLDIGC--GtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~------------------- 444 (595)
++.+||=.|+ +.|..+..+++. .+++++.+ .....++++.|....+.....
T Consensus 193 ~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s-----~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
T cd08246 193 PGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSS-----EEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTK 267 (393)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCC-----HHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhh
Confidence 5678998997 344555555553 45555544 334456666664322211000
Q ss_pred ---------CCCCCCCC-ceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 445 ---------ERLPFPGI-VFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 445 ---------~~LPfpd~-sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
..+ .... .+|+|+... - ...+..+.++|+++|.|++..
T Consensus 268 ~~~~~~~~v~~l-~~~~~g~d~vid~~---g-----~~~~~~~~~~l~~~G~~v~~g 315 (393)
T cd08246 268 EARRFGKAIWDI-LGGREDPDIVFEHP---G-----RATFPTSVFVCDRGGMVVICA 315 (393)
T ss_pred ccchHHHHHHHH-hCCCCCCeEEEECC---c-----hHhHHHHHHHhccCCEEEEEc
Confidence 000 0112 488887531 1 145777889999999999864
No 403
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=40.29 E-value=15 Score=30.49 Aligned_cols=20 Identities=35% Similarity=0.690 Sum_probs=16.4
Q ss_pred ehhhhHHHHHHHHHHhhhcC
Q 007641 22 VTITVFVALCLVGVWMMTSS 41 (595)
Q Consensus 22 ~~~~~~~~~~~~g~w~~~~~ 41 (595)
++|+|.|||.|||..-+-|-
T Consensus 4 ~Si~VLlaLvLIg~fAVqSd 23 (71)
T PF04202_consen 4 LSIAVLLALVLIGSFAVQSD 23 (71)
T ss_pred hhHHHHHHHHHHhhheeeec
Confidence 67999999999997766644
No 404
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=39.09 E-value=1.8e+02 Score=29.14 Aligned_cols=90 Identities=20% Similarity=0.148 Sum_probs=49.6
Q ss_pred CCCEEEEECCC--CchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC---CCC--CCCCCceeEEE
Q 007641 389 RTRVVLDVGCG--VASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT---ERL--PFPGIVFDAVH 458 (595)
Q Consensus 389 ~~~rVLDIGCG--tG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~---~~L--Pfpd~sFDlV~ 458 (595)
++.+||-+||. .|..+..++.. .|++++.++. +..++...+....+..... ..+ -.....+|+++
T Consensus 139 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~ 213 (323)
T cd08241 139 PGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEE-----KLALARALGADHVIDYRDPDLRERVKALTGGRGVDVVY 213 (323)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHH-----HHHHHHHcCCceeeecCCccHHHHHHHHcCCCCcEEEE
Confidence 57899999982 44444444443 5666655532 3445555554332221110 000 01224589887
Q ss_pred ecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 459 CARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 459 ~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
... . ...+..+.+.|+++|.++...
T Consensus 214 ~~~---g-----~~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 214 DPV---G-----GDVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred ECc---c-----HHHHHHHHHhhccCCEEEEEc
Confidence 632 1 245667788999999998764
No 405
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=38.61 E-value=28 Score=38.12 Aligned_cols=68 Identities=21% Similarity=0.293 Sum_probs=43.6
Q ss_pred cccccCCcc--cCCcccceehhhhHHHHHHHHHHhhhcCCCCcccccccCCCchhhhHHHhhhhccccCCCCcchhhhcC
Q 007641 5 KYTRVDGRR--SASSYCSTVTITVFVALCLVGVWMMTSSSSSSVVPVQNVDEPAQEKKSEAKEQLTESNESSSNQQFEDN 82 (595)
Q Consensus 5 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ed~ 82 (595)
+.+-|+|++ +.|.----+.+.++|||||.-+|.|.++ ...+.+.+.+. -|-.|+ +.||-.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~w~~~~~--------~~~~~~~~~~~-~v~~~t---------~~f~p~ 76 (376)
T PRK13855 15 SGSLVSDTHRRRLSGSQKLIVAGLVLALSLSLIWLGGRS--------KKENEPAPPST-MIATNT---------KPFHPA 76 (376)
T ss_pred CcccccCcccccCccchhhhHHHHHHHHHHHHHHhccCC--------CcccCCCCCCc-ceeccc---------CCCCCC
Confidence 345566654 3444444556667899999999999977 22233333332 345555 789988
Q ss_pred CCCCchhh
Q 007641 83 NADLPEDA 90 (595)
Q Consensus 83 ~~d~~~~~ 90 (595)
+-..+.++
T Consensus 77 ~~~~~~~~ 84 (376)
T PRK13855 77 PIDVPPDP 84 (376)
T ss_pred CCCCCCCC
Confidence 88888777
No 406
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=37.29 E-value=2e+02 Score=31.15 Aligned_cols=93 Identities=18% Similarity=0.002 Sum_probs=52.7
Q ss_pred CCEEEEECCCCchhHHHHhhCCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCccccc-
Q 007641 390 TRVVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHI- 468 (595)
Q Consensus 390 ~~rVLDIGCGtG~~a~~La~r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h~- 468 (595)
+++||=+|--...+...|....+.+.-. ..+..+ .+....+..+.+.. .. ..++ ...||+|+... +-..
T Consensus 20 ~~~~l~~~~~~d~~~~~l~~~~~~~~~~---~~~~~~-~~~~~~~~~~~f~~-~~-~~~~-~~~~d~~~~~~---pk~k~ 89 (342)
T PRK09489 20 QRRVLFAGDLQDDLPAQLDAASVRVHTQ---QFHHWQ-VLSRQMGDNARFSL-VA-TAED-VADCDTLIYYW---PKNKQ 89 (342)
T ss_pred CCcEEEEcCcchhhHHhhhccceEEehh---hhHHHH-HHHhhcCCceEecc-cc-CCcc-CCCCCEEEEEC---CCCHH
Confidence 5689999988777777776433333321 111111 22222233332221 11 1121 25799998642 2222
Q ss_pred CHHHHHHHHHHhccCCcEEEEEeC
Q 007641 469 EGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 469 d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
.....|..+.+.|+|||.+++.+.
T Consensus 90 ~~~~~l~~~~~~l~~g~~i~~~G~ 113 (342)
T PRK09489 90 EAQFQLMNLLSLLPVGTDIFVVGE 113 (342)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEe
Confidence 236788999999999999999874
No 407
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=37.25 E-value=1.5e+02 Score=30.93 Aligned_cols=91 Identities=18% Similarity=0.100 Sum_probs=48.7
Q ss_pred CCCEEEEECCC-CchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCC-----CCCCCceeEEEe
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL-----PFPGIVFDAVHC 459 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~L-----Pfpd~sFDlV~~ 459 (595)
++.+||=.|+| .|..+..+++. .|+++.-++ ....++...|+..++.......+ .+..+.+|+|+.
T Consensus 165 ~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~-----~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~ 239 (345)
T cd08260 165 PGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDD-----DKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVSVD 239 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCH-----HHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEEEE
Confidence 46788888864 23333444442 455554442 23344445555322211110011 111126898886
Q ss_pred cccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 460 ~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
.. .....+..+.+.|+++|.++...
T Consensus 240 ~~-------g~~~~~~~~~~~l~~~g~~i~~g 264 (345)
T cd08260 240 AL-------GIPETCRNSVASLRKRGRHVQVG 264 (345)
T ss_pred cC-------CCHHHHHHHHHHhhcCCEEEEeC
Confidence 32 11356778999999999998764
No 408
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=37.06 E-value=1.2e+02 Score=28.76 Aligned_cols=110 Identities=19% Similarity=0.136 Sum_probs=55.7
Q ss_pred EEEEECCCCc--hhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCcccc
Q 007641 392 VVLDVGCGVA--SFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWH 467 (595)
Q Consensus 392 rVLDIGCGtG--~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h 467 (595)
+|-=||+|.= .++..|++. .|++.|.++. ..+.....+. ........+- ...|+|++. +...
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~-----~~~~~~~~g~---~~~~s~~e~~---~~~dvvi~~---v~~~ 68 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE-----KAEALAEAGA---EVADSPAEAA---EQADVVILC---VPDD 68 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH-----HHHHHHHTTE---EEESSHHHHH---HHBSEEEE----SSSH
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccchh-----hhhhhHHhhh---hhhhhhhhHh---hcccceEee---cccc
Confidence 3555676521 233444443 6788888753 2233333341 1121112221 235888874 2322
Q ss_pred cCHHHHHHH--HHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEE
Q 007641 468 IEGGKLLLE--LNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSI 522 (595)
Q Consensus 468 ~d~~~lL~E--l~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~ 522 (595)
.....++.. +...|++|..|+-..+. .+..-..+.+.+...|...+.-
T Consensus 69 ~~v~~v~~~~~i~~~l~~g~iiid~sT~-------~p~~~~~~~~~~~~~g~~~vda 118 (163)
T PF03446_consen 69 DAVEAVLFGENILAGLRPGKIIIDMSTI-------SPETSRELAERLAAKGVRYVDA 118 (163)
T ss_dssp HHHHHHHHCTTHGGGS-TTEEEEE-SS---------HHHHHHHHHHHHHTTEEEEEE
T ss_pred hhhhhhhhhhHHhhccccceEEEecCCc-------chhhhhhhhhhhhhccceeeee
Confidence 234677777 88888888888766431 2344467777788888665443
No 409
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=36.95 E-value=2e+02 Score=29.86 Aligned_cols=91 Identities=25% Similarity=0.249 Sum_probs=49.4
Q ss_pred CCCEEEEECCC-CchhHHHHhhC---C-cEEEeCCchhHHHHHHHHHHHcCCCeeEeecC------CCCCCCCCCceeEE
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR---G-VLTMSFAPKDEHEAQVQFALERGIPAISAVMG------TERLPFPGIVFDAV 457 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r---~-V~giDisp~di~~aqvq~A~ergi~~~~~v~d------~~~LPfpd~sFDlV 457 (595)
++.+||=.||| .|..+..++++ . |++++..+ .....+...|....+.... ...+. +...+|+|
T Consensus 168 ~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~-----~~~~~~~~~ga~~v~~~~~~~~~~~i~~~~-~~~~~d~i 241 (345)
T cd08287 168 PGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHE-----DRQALAREFGATDIVAERGEEAVARVRELT-GGVGADAV 241 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH-----HHHHHHHHcCCceEecCCcccHHHHHHHhc-CCCCCCEE
Confidence 45666667765 33344444442 2 55555442 2334555556533222111 01111 23357888
Q ss_pred EecccCcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 458 ~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
+... .....+..+.+.|+++|.|++...
T Consensus 242 l~~~-------g~~~~~~~~~~~l~~~g~~v~~g~ 269 (345)
T cd08287 242 LECV-------GTQESMEQAIAIARPGGRVGYVGV 269 (345)
T ss_pred EECC-------CCHHHHHHHHHhhccCCEEEEecc
Confidence 7531 124678899999999999998653
No 410
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=36.55 E-value=98 Score=32.61 Aligned_cols=86 Identities=27% Similarity=0.224 Sum_probs=46.2
Q ss_pred CEEEEECCC--CchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCc
Q 007641 391 RVVLDVGCG--VASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 391 ~rVLDIGCG--tG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v 464 (595)
.+|+=+|.| -|+++..|..+ .|++.|.+ .+....+.+.++........ .--.....|+|+.+-
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~-----~~~~~~a~~lgv~d~~~~~~---~~~~~~~aD~Vivav--- 72 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRS-----AATLKAALELGVIDELTVAG---LAEAAAEADLVIVAV--- 72 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCc-----HHHHHHHhhcCcccccccch---hhhhcccCCEEEEec---
Confidence 467778866 34566666554 34555554 44445555555432211110 011224579998752
Q ss_pred ccccCHHHHHHHHHHhccCCcEEE
Q 007641 465 PWHIEGGKLLLELNRVLRPGGFFI 488 (595)
Q Consensus 465 ~~h~d~~~lL~El~RvLKPGG~Lv 488 (595)
+- .....+|.++..-|+||..+.
T Consensus 73 Pi-~~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 73 PI-EATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred cH-HHHHHHHHHhcccCCCCCEEE
Confidence 21 134677788887788776554
No 411
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=36.45 E-value=86 Score=34.07 Aligned_cols=110 Identities=17% Similarity=0.168 Sum_probs=57.5
Q ss_pred eeecCCCCcc-ccCchHHHHHHHHHhcccccCCC-CCCEEEEECCCCchhHHHHhh----CCcEEEeCCchhHHHHHHHH
Q 007641 356 YLTFPGGGTQ-FKNGALHYIDFIQESVPDVAWGK-RTRVVLDVGCGVASFGGFLFD----RGVLTMSFAPKDEHEAQVQF 429 (595)
Q Consensus 356 ~~~Fpggg~~-F~~ga~~yid~L~~~L~~l~~~~-~~~rVLDIGCGtG~~a~~La~----r~V~giDisp~di~~aqvq~ 429 (595)
+..+|.|-.- ....+..|+.+|..+|..-..++ ..++-+|||.|+--+-..+.. ...+++++....+..|..+.
T Consensus 67 ~veiP~grLcPtVPnR~nYihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV 146 (419)
T KOG2912|consen 67 SVEIPLGRLCPTVPNRLNYIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNV 146 (419)
T ss_pred eEecCccccCCCCccchhhHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccc
Confidence 3445554322 34566788988888887533222 123468999887654333333 36788888766555554433
Q ss_pred HHHcC---CCeeEeecCCCCC----C-CCCCceeEEEecccCcc
Q 007641 430 ALERG---IPAISAVMGTERL----P-FPGIVFDAVHCARCRVP 465 (595)
Q Consensus 430 A~erg---i~~~~~v~d~~~L----P-fpd~sFDlV~~~~c~v~ 465 (595)
+.... +.++....-..-| . -++..||.+.|+..++-
T Consensus 147 ~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNPPFfe 190 (419)
T KOG2912|consen 147 EQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCNPPFFE 190 (419)
T ss_pred cccccccceeeEEecchhhcchhhhccCccceeeEEecCCchhh
Confidence 32221 1111110100111 1 12456999999975443
No 412
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=36.31 E-value=1.9e+02 Score=29.92 Aligned_cols=90 Identities=19% Similarity=0.221 Sum_probs=48.6
Q ss_pred CCCEEEEECCC-CchhHHHHhhC---C-cEEEeCCchhHHHHHHHHHHHcCCCeeEeecC------CCCCCCCCCceeEE
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR---G-VLTMSFAPKDEHEAQVQFALERGIPAISAVMG------TERLPFPGIVFDAV 457 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r---~-V~giDisp~di~~aqvq~A~ergi~~~~~v~d------~~~LPfpd~sFDlV 457 (595)
++.+||=.|+| .|.++..++++ . |+++.-++. ...++...++...+.... ...+ .....+|+|
T Consensus 165 ~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~-----~~~~~~~~g~~~~~~~~~~~~~~~i~~~-~~~~~vd~v 238 (343)
T cd08235 165 PGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEF-----RLEFAKKLGADYTIDAAEEDLVEKVREL-TDGRGADVV 238 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHH-----HHHHHHHhCCcEEecCCccCHHHHHHHH-hCCcCCCEE
Confidence 56788878865 44455555553 4 555544432 223333445432221111 0011 123458988
Q ss_pred EecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 458 ~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
+-.. - ....+..+.+.|+++|.|+...
T Consensus 239 ld~~--~-----~~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 239 IVAT--G-----SPEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred EECC--C-----ChHHHHHHHHHhhcCCEEEEEe
Confidence 8532 1 1357788889999999998764
No 413
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=36.27 E-value=2.2e+02 Score=28.70 Aligned_cols=85 Identities=26% Similarity=0.254 Sum_probs=49.9
Q ss_pred CCEEEEECCC--CchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCc
Q 007641 390 TRVVLDVGCG--VASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 390 ~~rVLDIGCG--tG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v 464 (595)
+.+||=.|++ .|..+..+++. .|++++-++ ....++++.|....+.. ...+ ..+.+|+|+-.-
T Consensus 133 ~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~-----~~~~~~~~~g~~~~~~~--~~~~--~~~~~d~vl~~~--- 200 (305)
T cd08270 133 GRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSP-----ARAEGLRELGAAEVVVG--GSEL--SGAPVDLVVDSV--- 200 (305)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHHcCCcEEEec--cccc--cCCCceEEEECC---
Confidence 6788888884 44454445542 555555442 33455555665422211 1111 224689888532
Q ss_pred ccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 465 PWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 465 ~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
- ...+..+.+.|+++|+++...
T Consensus 201 g-----~~~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 201 G-----GPQLARALELLAPGGTVVSVG 222 (305)
T ss_pred C-----cHHHHHHHHHhcCCCEEEEEe
Confidence 1 135788999999999999765
No 414
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=36.19 E-value=1.7e+02 Score=30.36 Aligned_cols=90 Identities=17% Similarity=0.174 Sum_probs=48.0
Q ss_pred CCCEEEEECCCC-chhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecC-----CCCCCCCCCceeEEE
Q 007641 389 RTRVVLDVGCGV-ASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMG-----TERLPFPGIVFDAVH 458 (595)
Q Consensus 389 ~~~rVLDIGCGt-G~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d-----~~~LPfpd~sFDlV~ 458 (595)
++.+||=+|+|. |..+..++++ .|+++.-++ ...+++++.|+..++.... ...+ .+...+|+|+
T Consensus 167 ~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~~~~~dvvl 240 (340)
T cd05284 167 PGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSE-----EALKLAERLGADHVLNASDDVVEEVREL-TGGRGADAVI 240 (340)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCH-----HHHHHHHHhCCcEEEcCCccHHHHHHHH-hCCCCCCEEE
Confidence 467888888552 2233333332 455554443 2334445555432222111 0111 1223589888
Q ss_pred ecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 459 CARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 459 ~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
..- .....+..+.+.|+++|.|+...
T Consensus 241 d~~-------g~~~~~~~~~~~l~~~g~~i~~g 266 (340)
T cd05284 241 DFV-------GSDETLALAAKLLAKGGRYVIVG 266 (340)
T ss_pred EcC-------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 532 11356888899999999999764
No 415
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=35.84 E-value=50 Score=43.28 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=7.6
Q ss_pred HHHHHHHHhccCCcEEE
Q 007641 472 KLLLELNRVLRPGGFFI 488 (595)
Q Consensus 472 ~lL~El~RvLKPGG~Lv 488 (595)
.++.....+|.-||.-+
T Consensus 4419 ~lvtkals~le~g~iav 4435 (4600)
T COG5271 4419 ALVTKALSLLEVGQIAV 4435 (4600)
T ss_pred HHHHHHHHHHhhccEEE
Confidence 33444444444444444
No 416
>PRK06701 short chain dehydrogenase; Provisional
Probab=35.71 E-value=1.8e+02 Score=29.92 Aligned_cols=102 Identities=10% Similarity=-0.011 Sum_probs=48.3
Q ss_pred CCEEEEECCCCch---hHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCC-----CC-----CCce
Q 007641 390 TRVVLDVGCGVAS---FGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLP-----FP-----GIVF 454 (595)
Q Consensus 390 ~~rVLDIGCGtG~---~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LP-----fp-----d~sF 454 (595)
+++||=+|++.|. ++..|+++ .|+.++.................+..+.+..+|..... +. -+.+
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~i 125 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGRL 125 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 5689988875542 44444443 56666665322111111222233444445555532211 10 1347
Q ss_pred eEEEecccCccc--c---cC--------------HHHHHHHHHHhccCCcEEEEEe
Q 007641 455 DAVHCARCRVPW--H---IE--------------GGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 455 DlV~~~~c~v~~--h---~d--------------~~~lL~El~RvLKPGG~Lvis~ 491 (595)
|+|+.+...... . .+ .-.+++.+.+.++++|.|++..
T Consensus 126 D~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 126 DILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred CEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 877754321110 0 11 1245556666677888887764
No 417
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=34.38 E-value=99 Score=31.68 Aligned_cols=50 Identities=24% Similarity=0.461 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHHcCCEEEEEeecccCceEEEEEEeCCC
Q 007641 472 KLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKAMCWELVSISKDTINKVGIAVYRKPTS 540 (595)
Q Consensus 472 ~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~~Gw~~v~~~~~~l~~~giaI~~KP~~ 540 (595)
..+.++.|+|+++|.+++..+. .....+...++..||..+.. .||.|+..
T Consensus 80 ~~~~~~~rvl~~~~~~~v~~~~---------~~~~~~~~~~~~~gf~~~~~----------iiw~k~~~ 129 (302)
T COG0863 80 QWLAEQKRVLKPGGSLYVIDPF---------SNLARIEDIAKKLGFEILGK----------IIWKKPSP 129 (302)
T ss_pred HHHHHhhheecCCCEEEEECCc---------hhhhHHHHHHHhCCCeEeee----------EEEeCCCC
No 418
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.06 E-value=1.2e+02 Score=28.25 Aligned_cols=82 Identities=20% Similarity=0.180 Sum_probs=48.0
Q ss_pred CCEEEEECCCCch-hHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCC--CCCCCCCceeEEEecccCc
Q 007641 390 TRVVLDVGCGVAS-FGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTE--RLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 390 ~~rVLDIGCGtG~-~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~--~LPfpd~sFDlV~~~~c~v 464 (595)
.++|++||-|.=. .+.+|+++ .|+++||.+. .|. .|+. +.+-|.. .+..- ...|+|++.+|
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~--------~a~-~g~~--~v~DDitnP~~~iY-~~A~lIYSiRp-- 79 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK--------TAP-EGLR--FVVDDITNPNISIY-EGADLIYSIRP-- 79 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCCcEEEEecccc--------cCc-ccce--EEEccCCCccHHHh-hCccceeecCC--
Confidence 3489999988654 56677776 7889998753 222 3332 2332222 12111 34799999773
Q ss_pred ccccCHHHHHHHHHHhccCCcEE
Q 007641 465 PWHIEGGKLLLELNRVLRPGGFF 487 (595)
Q Consensus 465 ~~h~d~~~lL~El~RvLKPGG~L 487 (595)
.++....+..+.+.++-.-++
T Consensus 80 --ppEl~~~ildva~aVga~l~I 100 (129)
T COG1255 80 --PPELQSAILDVAKAVGAPLYI 100 (129)
T ss_pred --CHHHHHHHHHHHHhhCCCEEE
Confidence 334456777777766644433
No 419
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=34.05 E-value=4.8e+02 Score=28.22 Aligned_cols=23 Identities=30% Similarity=0.638 Sum_probs=20.1
Q ss_pred HHHHHHHHHhccCCcEEEEEeCC
Q 007641 471 GKLLLELNRVLRPGGFFIWSATP 493 (595)
Q Consensus 471 ~~lL~El~RvLKPGG~Lvis~pp 493 (595)
..+|..+..+++||-+|+|...|
T Consensus 222 t~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 222 TKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred HHHHHHHHhhcCCCcEEEEEcCC
Confidence 48999999999999999988654
No 420
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=34.03 E-value=39 Score=35.24 Aligned_cols=32 Identities=9% Similarity=0.250 Sum_probs=25.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhC---------CcEEEeCCc
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR---------GVLTMSFAP 419 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r---------~V~giDisp 419 (595)
.+...++|+|||.|.++.+++.. .++.||-..
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 35679999999999999888773 467777754
No 421
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=33.59 E-value=3.1e+02 Score=27.25 Aligned_cols=88 Identities=23% Similarity=0.205 Sum_probs=47.3
Q ss_pred CCCEEEEECCC--CchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCC--CCCCCceeEEEecc
Q 007641 389 RTRVVLDVGCG--VASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERL--PFPGIVFDAVHCAR 461 (595)
Q Consensus 389 ~~~rVLDIGCG--tG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~L--Pfpd~sFDlV~~~~ 461 (595)
++.+||=+|+. .|..+..++.. .|+++..+. ...++...+....+.... ..+ ......+|+|+...
T Consensus 144 ~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~d~v~~~~ 216 (309)
T cd05289 144 AGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA------NADFLRSLGADEVIDYTK-GDFERAAAPGGVDAVLDTV 216 (309)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch------hHHHHHHcCCCEEEeCCC-CchhhccCCCCceEEEECC
Confidence 57789888862 44444444442 444444322 234444455422222111 111 12234588887532
Q ss_pred cCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 462 CRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 462 c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
. ...+..+.+.|+++|.|+...
T Consensus 217 ---~-----~~~~~~~~~~l~~~g~~v~~g 238 (309)
T cd05289 217 ---G-----GETLARSLALVKPGGRLVSIA 238 (309)
T ss_pred ---c-----hHHHHHHHHHHhcCcEEEEEc
Confidence 1 136778889999999998764
No 422
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=32.92 E-value=2.2e+02 Score=29.47 Aligned_cols=90 Identities=20% Similarity=0.222 Sum_probs=51.5
Q ss_pred CCCEEEEECCC--CchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC------CCCCCCCCceeEE
Q 007641 389 RTRVVLDVGCG--VASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT------ERLPFPGIVFDAV 457 (595)
Q Consensus 389 ~~~rVLDIGCG--tG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~------~~LPfpd~sFDlV 457 (595)
++.+||=.|+| .|..+..++++ .|+++.-++ ....++...+...++..... ..+ .+...+|+|
T Consensus 165 ~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~-----~~~~~~~~~g~~~v~~~~~~~~~~~~~~~-~~~~~vd~v 238 (341)
T cd08297 165 PGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGD-----EKLELAKELGADAFVDFKKSDDVEAVKEL-TGGGGAHAV 238 (341)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCH-----HHHHHHHHcCCcEEEcCCCccHHHHHHHH-hcCCCCCEE
Confidence 47788888876 55666666664 455554442 23344444554332221111 011 123458988
Q ss_pred EecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 458 ~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
+... -....+..+.+.|+++|+|+...
T Consensus 239 l~~~-------~~~~~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 239 VVTA-------VSAAAYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred EEcC-------CchHHHHHHHHHhhcCCEEEEec
Confidence 8421 11356788899999999999764
No 423
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=32.76 E-value=1.4e+02 Score=33.50 Aligned_cols=68 Identities=24% Similarity=0.327 Sum_probs=45.4
Q ss_pred CCCEEEEECCC-Cch-hHHHHhhCCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecc
Q 007641 389 RTRVVLDVGCG-VAS-FGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCAR 461 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~-~a~~La~r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~ 461 (595)
.+.+||=||.| .|. .+.+|+.+++..+-|..+....|+ ++|.+.+..+.. ...++-.-..+|+|+++-
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~-~La~~~~~~~~~----l~el~~~l~~~DvVissT 246 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAE-ELAKKLGAEAVA----LEELLEALAEADVVISST 246 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHH-HHHHHhCCeeec----HHHHHHhhhhCCEEEEec
Confidence 47899999999 664 567788887777777777766665 667776632221 222222224699999975
No 424
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=32.47 E-value=2.7e+02 Score=24.96 Aligned_cols=98 Identities=17% Similarity=0.139 Sum_probs=48.0
Q ss_pred EEEEECCCCchhHHHHhhCCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCcccccCHH
Q 007641 392 VVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGG 471 (595)
Q Consensus 392 rVLDIGCGtG~~a~~La~r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h~d~~ 471 (595)
+|| +-||.|.-+..|+++ +...+.+.++++.+..............+|+|+... +..
T Consensus 5 kIl-lvC~~G~sTSll~~k---------------m~~~~~~~gi~~~V~A~~~~~~~~~~~~~DviLl~P-------qi~ 61 (106)
T PRK10499 5 HIY-LFCSAGMSTSLLVSK---------------MRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGP-------QIA 61 (106)
T ss_pred EEE-EECCCCccHHHHHHH---------------HHHHHHHCCCCEEEEEeecchhhccccCCCEEEECH-------HHH
Confidence 455 458888777766643 223345677776554422211111223579998864 223
Q ss_pred HHHHHHHHhccCCcEEEEEeCCCCCcCchhHHHHHHHHHHHHH
Q 007641 472 KLLLELNRVLRPGGFFIWSATPVYQKLPEDVEIWNAMSQLIKA 514 (595)
Q Consensus 472 ~lL~El~RvLKPGG~Lvis~pp~~~~l~e~i~~w~~le~Lak~ 514 (595)
..+.++.+...+ -.+++..+..|..+.. ......+..+++.
T Consensus 62 ~~~~~i~~~~~~-~pV~~I~~~~Yg~~dg-~~vl~~a~~~~~~ 102 (106)
T PRK10499 62 YMLPEIQRLLPN-KPVEVIDSLLYGKVDG-LGVLKAAVAAIKK 102 (106)
T ss_pred HHHHHHHhhcCC-CCEEEEChHhhhcCCH-HHHHHHHHHHHHH
Confidence 444555544443 3444444444543332 2233344444443
No 425
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=32.28 E-value=1.3e+02 Score=28.22 Aligned_cols=83 Identities=22% Similarity=0.202 Sum_probs=43.0
Q ss_pred CCEEEEECCCCch-hHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCC--CCCCCCceeEEEecccCc
Q 007641 390 TRVVLDVGCGVAS-FGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER--LPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 390 ~~rVLDIGCGtG~-~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~--LPfpd~sFDlV~~~~c~v 464 (595)
.++|++||-|.=. .+..|.++ .|+++|+.+. .+. .|++++ .-|... +.+- ...|+|++.++
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~--------~a~-~g~~~v--~DDif~P~l~iY-~~a~lIYSiRP-- 79 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR--------KAP-EGVNFV--VDDIFNPNLEIY-EGADLIYSIRP-- 79 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S-------------STTEE-----SSS--HHHH-TTEEEEEEES---
T ss_pred CCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc--------ccc-cCccee--eecccCCCHHHh-cCCcEEEEeCC--
Confidence 4599999999764 56666665 7899999865 222 455443 222221 1111 35899999873
Q ss_pred ccccCHHHHHHHHHHhccCCcEEEEE
Q 007641 465 PWHIEGGKLLLELNRVLRPGGFFIWS 490 (595)
Q Consensus 465 ~~h~d~~~lL~El~RvLKPGG~Lvis 490 (595)
..+....|.++.+.+. .-|+|.
T Consensus 80 --P~El~~~il~lA~~v~--adlii~ 101 (127)
T PF03686_consen 80 --PPELQPPILELAKKVG--ADLIIR 101 (127)
T ss_dssp ---TTSHHHHHHHHHHHT---EEEEE
T ss_pred --ChHHhHHHHHHHHHhC--CCEEEE
Confidence 3345566666666554 445543
No 426
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=32.15 E-value=2.1e+02 Score=29.07 Aligned_cols=90 Identities=17% Similarity=0.047 Sum_probs=48.7
Q ss_pred CCCEEEEECCC--CchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC---CCC--CCCCCceeEEE
Q 007641 389 RTRVVLDVGCG--VASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT---ERL--PFPGIVFDAVH 458 (595)
Q Consensus 389 ~~~rVLDIGCG--tG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~---~~L--Pfpd~sFDlV~ 458 (595)
++.+||=+|++ .|..+..++.. .|+.++.+.. ..+.+...+....+..... ..+ -.....+|+++
T Consensus 166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 240 (342)
T cd08266 166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSED-----KLERAKELGADYVIDYRKEDFVREVRELTGKRGVDVVV 240 (342)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHH-----HHHHHHHcCCCeEEecCChHHHHHHHHHhCCCCCcEEE
Confidence 46789988875 44444444442 5566655432 3344444443322211110 000 01224589888
Q ss_pred ecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 459 CARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 459 ~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
.... ...+..+.+.|+++|.++...
T Consensus 241 ~~~g--------~~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 241 EHVG--------AATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred ECCc--------HHHHHHHHHHhhcCCEEEEEe
Confidence 6431 245677889999999998764
No 427
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=32.03 E-value=1.5e+02 Score=30.50 Aligned_cols=84 Identities=18% Similarity=0.116 Sum_probs=47.5
Q ss_pred CCCEEEEECC--CCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecC----CCCCCCCCCceeEEEe
Q 007641 389 RTRVVLDVGC--GVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMG----TERLPFPGIVFDAVHC 459 (595)
Q Consensus 389 ~~~rVLDIGC--GtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d----~~~LPfpd~sFDlV~~ 459 (595)
++.+||=+|+ +.|..+..++++ .|+++.. ..++...|+...+.... ...+. +.||+|+.
T Consensus 162 ~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~---------~~~~~~~g~~~~~~~~~~~~~l~~~~---~~~d~vl~ 229 (325)
T cd08264 162 PGETVVVFGASGNTGIFAVQLAKMMGAEVIAVSR---------KDWLKEFGADEVVDYDEVEEKVKEIT---KMADVVIN 229 (325)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeH---------HHHHHHhCCCeeecchHHHHHHHHHh---CCCCEEEE
Confidence 5788998987 344555555553 4444431 13344444432221111 11121 45898875
Q ss_pred cccCcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 460 ~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
.. . ...+..+.+.|+++|.|+....
T Consensus 230 ~~-------g-~~~~~~~~~~l~~~g~~v~~g~ 254 (325)
T cd08264 230 SL-------G-SSFWDLSLSVLGRGGRLVTFGT 254 (325)
T ss_pred CC-------C-HHHHHHHHHhhccCCEEEEEec
Confidence 32 1 2578899999999999997653
No 428
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=31.87 E-value=2.5e+02 Score=28.57 Aligned_cols=90 Identities=20% Similarity=0.186 Sum_probs=51.1
Q ss_pred CCCEEEEECC--CCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCC----CC--CCCCCceeEE
Q 007641 389 RTRVVLDVGC--GVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTE----RL--PFPGIVFDAV 457 (595)
Q Consensus 389 ~~~rVLDIGC--GtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~----~L--Pfpd~sFDlV 457 (595)
++.+||=.|+ +.|..+..+++. .++.+.-+ ..+.+++...|....+...... .+ ......+|+|
T Consensus 140 ~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (334)
T PTZ00354 140 KGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSS-----EEKVDFCKKLAAIILIRYPDEEGFAPKVKKLTGEKGVNLV 214 (334)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHcCCcEEEecCChhHHHHHHHHHhCCCCceEE
Confidence 4678888885 356666666663 33444333 2344555555653222211100 00 0123458988
Q ss_pred EecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 458 ~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
+... ....+..+.+.|+++|.++...
T Consensus 215 i~~~--------~~~~~~~~~~~l~~~g~~i~~~ 240 (334)
T PTZ00354 215 LDCV--------GGSYLSETAEVLAVDGKWIVYG 240 (334)
T ss_pred EECC--------chHHHHHHHHHhccCCeEEEEe
Confidence 8632 1357788999999999999764
No 429
>PLN02494 adenosylhomocysteinase
Probab=31.65 E-value=1.1e+02 Score=34.93 Aligned_cols=98 Identities=12% Similarity=0.074 Sum_probs=54.0
Q ss_pred HHHHHHhcccccCCCCCCEEEEECCCC-chhHHHHhh---CCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCC
Q 007641 374 IDFIQESVPDVAWGKRTRVVLDVGCGV-ASFGGFLFD---RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPF 449 (595)
Q Consensus 374 id~L~~~L~~l~~~~~~~rVLDIGCGt-G~~a~~La~---r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPf 449 (595)
++-|.+....+ ..+++|+=+|+|. |...+.++. ..|++++.++.- ...+...|..+. ....+ +
T Consensus 241 ~d~i~r~t~i~---LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r-----~~eA~~~G~~vv----~leEa-l 307 (477)
T PLN02494 241 PDGLMRATDVM---IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPIC-----ALQALMEGYQVL----TLEDV-V 307 (477)
T ss_pred HHHHHHhcCCc---cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchh-----hHHHHhcCCeec----cHHHH-H
Confidence 44454443321 2478999999983 332222222 268888887642 122333443321 11111 1
Q ss_pred CCCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 450 PGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 450 pd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
...|+|++... ....+..+....||+||+|+....
T Consensus 308 --~~ADVVI~tTG------t~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 308 --SEADIFVTTTG------NKDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred --hhCCEEEECCC------CccchHHHHHhcCCCCCEEEEcCC
Confidence 24799987431 122344778889999999998754
No 430
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=31.04 E-value=1.2e+02 Score=31.90 Aligned_cols=86 Identities=16% Similarity=0.077 Sum_probs=46.3
Q ss_pred CCCEEEEECCCCc-hhHHHHhh-C--CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCc
Q 007641 389 RTRVVLDVGCGVA-SFGGFLFD-R--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRV 464 (595)
Q Consensus 389 ~~~rVLDIGCGtG-~~a~~La~-r--~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v 464 (595)
.+.+||=||+|.- ..+..++. . .|++++.++. ....+...+.... .. ..+.-.-..+|+|+.. +
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~-----~~~~~~~~G~~~~--~~--~~l~~~l~~aDiVI~t---~ 218 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA-----HLARITEMGLSPF--HL--SELAEEVGKIDIIFNT---I 218 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH-----HHHHHHHcCCeee--cH--HHHHHHhCCCCEEEEC---C
Confidence 4789999999842 22222222 2 6778877743 2233444453221 11 1111111358999974 2
Q ss_pred ccccCHHHHHHHHHHhccCCcEEEEE
Q 007641 465 PWHIEGGKLLLELNRVLRPGGFFIWS 490 (595)
Q Consensus 465 ~~h~d~~~lL~El~RvLKPGG~Lvis 490 (595)
+. ..+-.++.+.++||++++-.
T Consensus 219 p~----~~i~~~~l~~~~~g~vIIDl 240 (296)
T PRK08306 219 PA----LVLTKEVLSKMPPEALIIDL 240 (296)
T ss_pred Ch----hhhhHHHHHcCCCCcEEEEE
Confidence 21 23345677889999887744
No 431
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=31.00 E-value=2.7e+02 Score=28.68 Aligned_cols=34 Identities=21% Similarity=0.079 Sum_probs=24.9
Q ss_pred CceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 452 IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 452 ~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
..+|+|+-.. .....+..+.++|+++|.++....
T Consensus 232 ~~vd~vld~~-------g~~~~~~~~~~~l~~~G~~v~~g~ 265 (306)
T cd08258 232 DGADVVIECS-------GAVPALEQALELLRKGGRIVQVGI 265 (306)
T ss_pred CCCCEEEECC-------CChHHHHHHHHHhhcCCEEEEEcc
Confidence 4588887532 124678889999999999997643
No 432
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=29.92 E-value=1.8e+02 Score=30.01 Aligned_cols=91 Identities=14% Similarity=0.104 Sum_probs=48.3
Q ss_pred CCCCEEEEECCC-CchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCC----C-CCCCCceeEE
Q 007641 388 KRTRVVLDVGCG-VASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER----L-PFPGIVFDAV 457 (595)
Q Consensus 388 ~~~~rVLDIGCG-tG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~----L-Pfpd~sFDlV 457 (595)
.++.+||=.|+| .|..+..+++. .|++++-++ ....+++..|+..++....... + ... +.+|++
T Consensus 161 ~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~-----~~~~~~~~~g~~~v~~~~~~~~~~~~v~~~~-~~~d~v 234 (338)
T PRK09422 161 KPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDIND-----DKLALAKEVGADLTINSKRVEDVAKIIQEKT-GGAHAA 234 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCh-----HHHHHHHHcCCcEEecccccccHHHHHHHhc-CCCcEE
Confidence 357789988864 33444444442 455555443 3445555556543222111000 0 011 136743
Q ss_pred EecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 458 ~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
+... . ....+..+.+.|+++|.|+...
T Consensus 235 i~~~--~-----~~~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 235 VVTA--V-----AKAAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred EEeC--C-----CHHHHHHHHHhccCCCEEEEEe
Confidence 3211 1 1356889999999999999764
No 433
>PRK07806 short chain dehydrogenase; Provisional
Probab=29.90 E-value=3.3e+02 Score=26.68 Aligned_cols=20 Identities=10% Similarity=0.177 Sum_probs=13.4
Q ss_pred HHHHHHHHhccCCcEEEEEe
Q 007641 472 KLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 472 ~lL~El~RvLKPGG~Lvis~ 491 (595)
.+++.+.+.++.+|.+++..
T Consensus 115 ~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 115 NLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred HHHHHHHhhccCCceEEEEe
Confidence 56666777766677777653
No 434
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=29.08 E-value=3.3e+02 Score=28.49 Aligned_cols=90 Identities=14% Similarity=0.026 Sum_probs=47.3
Q ss_pred CCCEEEEECCC-CchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC------CCCCCCCCceeEE
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT------ERLPFPGIVFDAV 457 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~------~~LPfpd~sFDlV 457 (595)
++.+||=.|+| .|..+..+++. .|++++-.+ ....++.+.|...++..... ..+ .+...+|+|
T Consensus 174 ~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~-----~~~~~~~~~g~~~v~~~~~~~~~~~~~~~-~~~~~vdvv 247 (350)
T cd08256 174 FDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKD-----ERLALARKFGADVVLNPPEVDVVEKIKEL-TGGYGCDIY 247 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCH-----HHHHHHHHcCCcEEecCCCcCHHHHHHHH-hCCCCCCEE
Confidence 46667666653 33344444442 245666543 23345555565332211100 011 122348988
Q ss_pred EecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 458 ~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
+..- .....+..+.+.|+++|.|+...
T Consensus 248 ld~~-------g~~~~~~~~~~~l~~~G~~v~~g 274 (350)
T cd08256 248 IEAT-------GHPSAVEQGLNMIRKLGRFVEFS 274 (350)
T ss_pred EECC-------CChHHHHHHHHHhhcCCEEEEEc
Confidence 7532 11246788999999999998764
No 435
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=28.73 E-value=2.1e+02 Score=29.97 Aligned_cols=87 Identities=17% Similarity=0.125 Sum_probs=45.2
Q ss_pred CCEEEEECCCC-c-hhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccC
Q 007641 390 TRVVLDVGCGV-A-SFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCR 463 (595)
Q Consensus 390 ~~rVLDIGCGt-G-~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~ 463 (595)
..+|+=||+|. | .++..|... .|+++|.++. ..+.+...++.... ..+.... -...|+|+..-
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~-----~~~~a~~~g~~~~~-~~~~~~~---~~~aDvViiav-- 74 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAE-----TRARARELGLGDRV-TTSAAEA---VKGADLVILCV-- 74 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHH-----HHHHHHhCCCCcee-cCCHHHH---hcCCCEEEECC--
Confidence 35788899885 2 355555554 4677887643 23344444532111 1111111 13478888742
Q ss_pred cccccCHHHHHHHHHHhccCCcEEEE
Q 007641 464 VPWHIEGGKLLLELNRVLRPGGFFIW 489 (595)
Q Consensus 464 v~~h~d~~~lL~El~RvLKPGG~Lvi 489 (595)
+.. ....++.++...|+||..++.
T Consensus 75 -p~~-~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 75 -PVG-ASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred -CHH-HHHHHHHHHHhhCCCCCEEEe
Confidence 111 124556666677777775543
No 436
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=28.60 E-value=3e+02 Score=28.44 Aligned_cols=33 Identities=12% Similarity=0.080 Sum_probs=23.7
Q ss_pred CceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 452 IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 452 ~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
+.+|+|+-.. .....+.++.+.|+++|.++...
T Consensus 232 ~~~d~vid~~-------g~~~~~~~~~~~l~~~g~~v~~g 264 (341)
T cd08262 232 PKPAVIFECV-------GAPGLIQQIIEGAPPGGRIVVVG 264 (341)
T ss_pred CCCCEEEECC-------CCHHHHHHHHHHhccCCEEEEEC
Confidence 4588887532 11246788899999999998764
No 437
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=28.53 E-value=3.6e+02 Score=27.23 Aligned_cols=34 Identities=15% Similarity=-0.107 Sum_probs=24.7
Q ss_pred CceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 452 IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 452 ~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
..+|+|+... .....+..+.++|+++|.|+....
T Consensus 197 ~~vd~vld~~-------g~~~~~~~~~~~l~~~g~~~~~g~ 230 (312)
T cd08269 197 AGADVVIEAV-------GHQWPLDLAGELVAERGRLVIFGY 230 (312)
T ss_pred CCCCEEEECC-------CCHHHHHHHHHHhccCCEEEEEcc
Confidence 4588888532 123577888999999999997653
No 438
>COG1987 FliQ Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=28.45 E-value=40 Score=29.72 Aligned_cols=16 Identities=50% Similarity=1.086 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHhhh
Q 007641 24 ITVFVALCLVGVWMMT 39 (595)
Q Consensus 24 ~~~~~~~~~~g~w~~~ 39 (595)
|++|++|.+.|=||+.
T Consensus 56 iai~~~l~~~gpWm~~ 71 (89)
T COG1987 56 IAVFLVLILLGPWMLN 71 (89)
T ss_pred HHHHHHHHHHhHHHHH
Confidence 6899999999999974
No 439
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=28.40 E-value=2.9e+02 Score=27.53 Aligned_cols=89 Identities=16% Similarity=0.069 Sum_probs=50.6
Q ss_pred CCCEEEEECC--CCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecC------CCCCCCCCCceeEE
Q 007641 389 RTRVVLDVGC--GVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMG------TERLPFPGIVFDAV 457 (595)
Q Consensus 389 ~~~rVLDIGC--GtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d------~~~LPfpd~sFDlV 457 (595)
++.+||=+|+ +.|..+..+++. .|++++.++ .+..++...++...+.... ...+ .....+|+|
T Consensus 136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~d~v 209 (320)
T cd05286 136 PGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSE-----EKAELARAAGADHVINYRDEDFVERVREI-TGGRGVDVV 209 (320)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCH-----HHHHHHHHCCCCEEEeCCchhHHHHHHHH-cCCCCeeEE
Confidence 4678998885 355555555553 455555442 2345555556533222111 0111 123458988
Q ss_pred EecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 458 ~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
+... . ...+..+.+.|+++|.++...
T Consensus 210 l~~~---~-----~~~~~~~~~~l~~~g~~v~~g 235 (320)
T cd05286 210 YDGV---G-----KDTFEGSLDSLRPRGTLVSFG 235 (320)
T ss_pred EECC---C-----cHhHHHHHHhhccCcEEEEEe
Confidence 8532 1 146677889999999999764
No 440
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=28.22 E-value=2.2e+02 Score=22.92 Aligned_cols=60 Identities=13% Similarity=0.033 Sum_probs=32.1
Q ss_pred HHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEE
Q 007641 426 QVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (595)
Q Consensus 426 qvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis 490 (595)
..++..+.|+.+.........++..+..+ +|+... .. .....-+..+.+.++.||.++|.
T Consensus 10 ~~~~L~~~g~~v~~~~~~~~~l~~~~~tl-l~i~~~--~~--~~~~~~~~~l~~~v~~G~~lvl~ 69 (70)
T PF14258_consen 10 LYQLLEEQGVKVERWRKPYEALEADDGTL-LVIGPD--LR--LSEPEEAEALLEWVEAGNTLVLA 69 (70)
T ss_pred HHHHHHHCCCeeEEecccHHHhCCCCCEE-EEEeCC--CC--CCchHHHHHHHHHHHcCCEEEEe
Confidence 33455556666544333333444333333 222222 11 12146677888999999999985
No 441
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=27.78 E-value=2.1e+02 Score=25.29 Aligned_cols=55 Identities=13% Similarity=0.077 Sum_probs=34.5
Q ss_pred EEEEECCCCchhHHHHhhCCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecc
Q 007641 392 VVLDVGCGVASFGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCAR 461 (595)
Q Consensus 392 rVLDIGCGtG~~a~~La~r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~ 461 (595)
+|| +-||.|.-+..+.+. .-.++.+++|+++...+......+-....+|+|+++.
T Consensus 3 KIL-~aCG~GvgSS~~ik~--------------kve~~l~~~gi~~~~~~~~v~~~~~~~~~aDiiv~s~ 57 (93)
T COG3414 3 KIL-AACGNGVGSSTMIKM--------------KVEEVLKELGIDVDVEQCAVDEIKALTDGADIIVTST 57 (93)
T ss_pred EEE-EECCCCccHHHHHHH--------------HHHHHHHHcCCCceeeeEEecccccCCCcccEEEEeh
Confidence 455 459998665555442 2335677888886666655544443335679999875
No 442
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=27.73 E-value=2.1e+02 Score=29.07 Aligned_cols=89 Identities=17% Similarity=0.055 Sum_probs=49.4
Q ss_pred CCCEEEEECCC--CchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecC------CCCCCCCCCceeEE
Q 007641 389 RTRVVLDVGCG--VASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMG------TERLPFPGIVFDAV 457 (595)
Q Consensus 389 ~~~rVLDIGCG--tG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d------~~~LPfpd~sFDlV 457 (595)
++.+||=+|++ .|..+..+++. .++++.-+. ...++++..|+...+.... ...+ .....+|+|
T Consensus 138 ~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~d~v 211 (323)
T cd05282 138 PGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRD-----EQVEELKALGADEVIDSSPEDLAQRVKEA-TGGAGARLA 211 (323)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCh-----HHHHHHHhcCCCEEecccchhHHHHHHHH-hcCCCceEE
Confidence 57789888873 55566666663 455544432 2344555556533222211 0111 122458999
Q ss_pred EecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 458 ~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
+... . . ..+..+.+.|+++|+++...
T Consensus 212 l~~~---g---~--~~~~~~~~~l~~~g~~v~~g 237 (323)
T cd05282 212 LDAV---G---G--ESATRLARSLRPGGTLVNYG 237 (323)
T ss_pred EECC---C---C--HHHHHHHHhhCCCCEEEEEc
Confidence 8632 1 1 23457789999999998654
No 443
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=27.07 E-value=3.4e+02 Score=28.95 Aligned_cols=132 Identities=14% Similarity=0.212 Sum_probs=71.4
Q ss_pred HHHHHHHHhcccccC---CCCCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCC
Q 007641 372 HYIDFIQESVPDVAW---GKRTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER 446 (595)
Q Consensus 372 ~yid~L~~~L~~l~~---~~~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~ 446 (595)
..-..+...|+.-.| ..++....|+|+-.|.++-.|.++ .|+++|-.+. .+-....| .+.....|...
T Consensus 191 KLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~m------a~sL~dtg-~v~h~r~DGfk 263 (358)
T COG2933 191 KLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGPM------AQSLMDTG-QVTHLREDGFK 263 (358)
T ss_pred hHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhcceEEEEeccchh------hhhhhccc-ceeeeeccCcc
Confidence 344445555554333 236899999999999999999997 5777776432 11111222 12223333332
Q ss_pred C-CCCCCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeCCCCC-------cCchhHHHHHHHHHHHHHcCCE
Q 007641 447 L-PFPGIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQ-------KLPEDVEIWNAMSQLIKAMCWE 518 (595)
Q Consensus 447 L-Pfpd~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~-------~l~e~i~~w~~le~Lak~~Gw~ 518 (595)
. | .....|-.+|.. +- .+..+-.-|...|..| |....+++ +..+-......|+..+...|+.
T Consensus 264 ~~P-~r~~idWmVCDm--VE---kP~rv~~li~~Wl~nG----wCre~IfNLKLPMKkRy~Ev~~~L~~~~~~l~~~g~~ 333 (358)
T COG2933 264 FRP-TRSNIDWMVCDM--VE---KPARVAALIAKWLVNG----WCRETIFNLKLPMKKRYEEVRLCLARLEEQLDEHGIN 333 (358)
T ss_pred ccc-CCCCCceEEeeh--hc---CcHHHHHHHHHHHHcc----hHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 2 3 235689999864 32 3445555556666654 22111221 2222222345666667777876
Q ss_pred EE
Q 007641 519 LV 520 (595)
Q Consensus 519 ~v 520 (595)
..
T Consensus 334 ~~ 335 (358)
T COG2933 334 AQ 335 (358)
T ss_pred ee
Confidence 43
No 444
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=26.55 E-value=2.6e+02 Score=29.89 Aligned_cols=92 Identities=10% Similarity=-0.043 Sum_probs=47.4
Q ss_pred CCCEEEEECCC-CchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCC-C-----CCCCCCceeEE
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTE-R-----LPFPGIVFDAV 457 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~-~-----LPfpd~sFDlV 457 (595)
++.+||=+|+| .|..+..+++. .|++++.+ ..+.++++..|....+...... . ..+..+.+|+|
T Consensus 190 ~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~-----~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~~~d~v 264 (373)
T cd08299 190 PGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDIN-----KDKFAKAKELGATECINPQDYKKPIQEVLTEMTDGGVDFS 264 (373)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC-----HHHHHHHHHcCCceEecccccchhHHHHHHHHhCCCCeEE
Confidence 46788888764 22333333332 46666654 3355666666654322221100 0 01112458988
Q ss_pred EecccCcccccCHHHHHHH-HHHhccCCcEEEEEeC
Q 007641 458 HCARCRVPWHIEGGKLLLE-LNRVLRPGGFFIWSAT 492 (595)
Q Consensus 458 ~~~~c~v~~h~d~~~lL~E-l~RvLKPGG~Lvis~p 492 (595)
+-.- .....+.. +..++++||.|++...
T Consensus 265 ld~~-------g~~~~~~~~~~~~~~~~G~~v~~g~ 293 (373)
T cd08299 265 FEVI-------GRLDTMKAALASCHEGYGVSVIVGV 293 (373)
T ss_pred EECC-------CCcHHHHHHHHhhccCCCEEEEEcc
Confidence 7532 11345555 4445678999987753
No 445
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=26.45 E-value=4.1e+02 Score=27.45 Aligned_cols=33 Identities=27% Similarity=0.180 Sum_probs=24.4
Q ss_pred CceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 452 IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 452 ~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
..+|+|+-.. .....+..+.+.|+++|.|+...
T Consensus 234 ~~~dvvid~~-------~~~~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 234 RGADVVLEAV-------GGAAALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred CCCCEEEECC-------CCHHHHHHHHHhcccCCEEEEEC
Confidence 4589887532 12357888999999999998764
No 446
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=26.34 E-value=29 Score=30.86 Aligned_cols=15 Identities=13% Similarity=0.421 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHhhh
Q 007641 25 TVFVALCLVGVWMMT 39 (595)
Q Consensus 25 ~~~~~~~~~g~w~~~ 39 (595)
.||++|+|+=|-++.
T Consensus 6 ~llL~l~LA~lLlis 20 (95)
T PF07172_consen 6 FLLLGLLLAALLLIS 20 (95)
T ss_pred HHHHHHHHHHHHHHH
Confidence 677788777665554
No 447
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=26.19 E-value=34 Score=29.85 Aligned_cols=24 Identities=25% Similarity=0.312 Sum_probs=17.6
Q ss_pred ccceehhhhHHHHHHHHHHhhhcC
Q 007641 18 YCSTVTITVFVALCLVGVWMMTSS 41 (595)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~w~~~~~ 41 (595)
.=.|++|.++++|+|++++++++-
T Consensus 13 ~l~~~~isi~~~lvi~~i~~~~~~ 36 (96)
T PF13800_consen 13 RLRTVVISIISALVIFIISFIISA 36 (96)
T ss_pred HHHHHHHHHhhhhhhHHHHHHhhh
Confidence 345667888888888888887743
No 448
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=25.38 E-value=2.6e+02 Score=28.46 Aligned_cols=89 Identities=17% Similarity=0.216 Sum_probs=50.2
Q ss_pred CCEEEEECC--CCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC----CCCCCCCCceeEEEec
Q 007641 390 TRVVLDVGC--GVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT----ERLPFPGIVFDAVHCA 460 (595)
Q Consensus 390 ~~rVLDIGC--GtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~----~~LPfpd~sFDlV~~~ 460 (595)
+.+||=.|+ +.|.++..+++. .|+.++.++ ....++++.|....+..... ... ...+.+|+|+-.
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~d~vi~~ 220 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKE-----EQADYLKSLGASEVLDREDLLDESKKP-LLKARWAGAIDT 220 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHhcCCcEEEcchhHHHHHHHH-hcCCCccEEEEC
Confidence 457888886 345555555553 466665553 23455555565332221110 000 122348888753
Q ss_pred ccCcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 461 RCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 461 ~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
. ....+..+.+.|+++|.++....
T Consensus 221 ~--------~~~~~~~~~~~l~~~g~~v~~g~ 244 (325)
T cd05280 221 V--------GGDVLANLLKQTKYGGVVASCGN 244 (325)
T ss_pred C--------chHHHHHHHHhhcCCCEEEEEec
Confidence 2 12478889999999999997653
No 449
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=25.20 E-value=4.1e+02 Score=27.12 Aligned_cols=88 Identities=17% Similarity=0.148 Sum_probs=49.3
Q ss_pred CCCEEEEECC--CCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHH-cCCCeeEeecC------CCCCCCCCCceeE
Q 007641 389 RTRVVLDVGC--GVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALE-RGIPAISAVMG------TERLPFPGIVFDA 456 (595)
Q Consensus 389 ~~~rVLDIGC--GtG~~a~~La~r---~V~giDisp~di~~aqvq~A~e-rgi~~~~~v~d------~~~LPfpd~sFDl 456 (595)
++.+||=+|+ +.|..+..++++ .|++++-++ ....++.. .+....+.... ...+. .+.+|+
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~--~~~~d~ 217 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSD-----EKCRWLVEELGFDAAINYKTPDLAEALKEAA--PDGIDV 217 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHhhcCCceEEecCChhHHHHHHHhc--cCCceE
Confidence 4678988884 345555555553 455554442 23344444 45432222211 01111 245888
Q ss_pred EEecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 457 VHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 457 V~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
|+... ....+..+.+.|+++|.|+...
T Consensus 218 vi~~~--------g~~~~~~~~~~l~~~G~~v~~g 244 (329)
T cd05288 218 YFDNV--------GGEILDAALTLLNKGGRIALCG 244 (329)
T ss_pred EEEcc--------hHHHHHHHHHhcCCCceEEEEe
Confidence 87531 1247888999999999998664
No 450
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=24.99 E-value=2.8e+02 Score=28.27 Aligned_cols=89 Identities=18% Similarity=0.138 Sum_probs=48.1
Q ss_pred CCCEEEEECCC--CchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC------CCCCCCCCceeEE
Q 007641 389 RTRVVLDVGCG--VASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT------ERLPFPGIVFDAV 457 (595)
Q Consensus 389 ~~~rVLDIGCG--tG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~------~~LPfpd~sFDlV 457 (595)
++.+||=.|+. .|..+..++++ .++.+.-+. ....+++..|+...+..... ..+ .....+|+|
T Consensus 139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~i~~~-~~~~~~d~v 212 (324)
T cd08292 139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRD-----AGVAELRALGIGPVVSTEQPGWQDKVREA-AGGAPISVA 212 (324)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCH-----HHHHHHHhcCCCEEEcCCCchHHHHHHHH-hCCCCCcEE
Confidence 57788888762 55566666664 344443221 22334444455332221110 011 122358998
Q ss_pred EecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 458 ~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
+... . . ..+..+.+.|+++|.|+...
T Consensus 213 ~d~~---g---~--~~~~~~~~~l~~~g~~v~~g 238 (324)
T cd08292 213 LDSV---G---G--KLAGELLSLLGEGGTLVSFG 238 (324)
T ss_pred EECC---C---C--hhHHHHHHhhcCCcEEEEEe
Confidence 8532 1 1 34578899999999999765
No 451
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=24.65 E-value=4e+02 Score=28.34 Aligned_cols=91 Identities=15% Similarity=0.123 Sum_probs=52.9
Q ss_pred CEEEEECCC-C-chhHHHHhhCC-cEEEeCCchhHHHHHHHHHHHcCCCeeEeec--C----CCCCCCCCCceeEEEecc
Q 007641 391 RVVLDVGCG-V-ASFGGFLFDRG-VLTMSFAPKDEHEAQVQFALERGIPAISAVM--G----TERLPFPGIVFDAVHCAR 461 (595)
Q Consensus 391 ~rVLDIGCG-t-G~~a~~La~r~-V~giDisp~di~~aqvq~A~ergi~~~~~v~--d----~~~LPfpd~sFDlV~~~~ 461 (595)
.+|+=+|+| . +.++.+|++.+ .+.+..-+. +++..++.|+.+..... . ....+.....+|+|+..-
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~-----~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~v 75 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSR-----RLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTV 75 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHH-----HHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEe
Confidence 368889999 3 45778888765 333333221 22333444554322222 0 011112224699998753
Q ss_pred cCcccccCHHHHHHHHHHhccCCcEEEEE
Q 007641 462 CRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (595)
Q Consensus 462 c~v~~h~d~~~lL~El~RvLKPGG~Lvis 490 (595)
-..+...++..+.+.++|.-.+++.
T Consensus 76 ----Ka~q~~~al~~l~~~~~~~t~vl~l 100 (307)
T COG1893 76 ----KAYQLEEALPSLAPLLGPNTVVLFL 100 (307)
T ss_pred ----ccccHHHHHHHhhhcCCCCcEEEEE
Confidence 2235689999999999999887765
No 452
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=24.40 E-value=1.4e+02 Score=32.08 Aligned_cols=49 Identities=14% Similarity=0.270 Sum_probs=39.5
Q ss_pred CCCEEEEECCCCchhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCe
Q 007641 389 RTRVVLDVGCGVASFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPA 437 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~~ 437 (595)
.+.+|.-||.|--....+|.+. .|.++|+.+..+....++.+.-+.++.
T Consensus 63 ~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~lklaA~R~Lp~ 113 (414)
T COG5379 63 IGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNRLKLAAFRHLPS 113 (414)
T ss_pred CCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHHHHHHHHhhccc
Confidence 4789999999988888888874 899999998877777777776666554
No 453
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.19 E-value=50 Score=31.79 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHHhhhcCCCCcccccccCC
Q 007641 24 ITVFVALCLVGVWMMTSSSSSSVVPVQNVD 53 (595)
Q Consensus 24 ~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~ 53 (595)
.|+|+|+.|+++-|+++| ..|.++.-
T Consensus 13 ~viflai~~s~~~~~~~s----~~P~~~~~ 38 (161)
T COG5353 13 LVIFLAIILSIALFFWKS----MKPYHEAE 38 (161)
T ss_pred HHHHHHHHHHHHHHHhHh----cCccchhH
Confidence 389999999999999965 67887764
No 454
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=23.98 E-value=3.6e+02 Score=29.14 Aligned_cols=40 Identities=13% Similarity=0.221 Sum_probs=33.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhC-----CcEEEeCCchhHHHHHH
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR-----GVLTMSFAPKDEHEAQV 427 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r-----~V~giDisp~di~~aqv 427 (595)
.+....||.=-|.|..+.+++.+ .++++|-++..+..++.
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~ 66 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKE 66 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHH
Confidence 45789999999999999999885 49999999887766653
No 455
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=23.91 E-value=3.6e+02 Score=30.57 Aligned_cols=73 Identities=26% Similarity=0.136 Sum_probs=40.9
Q ss_pred CCEEEEECCC-CchhH-HHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEecccCcc
Q 007641 390 TRVVLDVGCG-VASFG-GFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARCRVP 465 (595)
Q Consensus 390 ~~rVLDIGCG-tG~~a-~~La~r--~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c~v~ 465 (595)
+.+|+=+|=| +|.-+ .+|.++ .|++.|..+...... .+.....++.+.... ... +....||+|+.+...-+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~-~~~~~~~~i~~~~g~---~~~-~~~~~~d~vV~SPGi~~ 81 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLA-AQPLLLEGIEVELGS---HDD-EDLAEFDLVVKSPGIPP 81 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchh-hhhhhccCceeecCc---cch-hccccCCEEEECCCCCC
Confidence 5689999977 55433 444443 789999887652222 222233344332222 222 34467999999974333
Q ss_pred cc
Q 007641 466 WH 467 (595)
Q Consensus 466 ~h 467 (595)
-|
T Consensus 82 ~~ 83 (448)
T COG0771 82 TH 83 (448)
T ss_pred CC
Confidence 33
No 456
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=23.62 E-value=3.7e+02 Score=28.67 Aligned_cols=96 Identities=18% Similarity=0.087 Sum_probs=49.9
Q ss_pred CCCEEEEECCC-CchhHHHHhhC----CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCC-----CCCCCCceeEEE
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR----GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER-----LPFPGIVFDAVH 458 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r----~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~-----LPfpd~sFDlV~ 458 (595)
++.+||=.|+| .|..+..+++. .|++++.. ......+++.|.. .+ ...... ..+..+.+|+|+
T Consensus 176 ~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~-----~~~~~~~~~~g~~-~v-~~~~~~~~~~i~~~~~~~~d~v~ 248 (375)
T cd08282 176 PGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHV-----PERLDLAESIGAI-PI-DFSDGDPVEQILGLEPGGVDRAV 248 (375)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHcCCe-Ee-ccCcccHHHHHHHhhCCCCCEEE
Confidence 46777778875 33444444442 35555554 2334455555542 11 111000 011124589888
Q ss_pred ecccCccc----ccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 459 CARCRVPW----HIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 459 ~~~c~v~~----h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
-....-.. .......+.++.++|+++|.+++..
T Consensus 249 d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g 285 (375)
T cd08282 249 DCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVG 285 (375)
T ss_pred ECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEe
Confidence 63211000 0133467889999999999997653
No 457
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=23.43 E-value=1.4e+02 Score=30.87 Aligned_cols=39 Identities=21% Similarity=0.178 Sum_probs=26.0
Q ss_pred CCCCEEEEECCCCchhHHHHh--h----CCcEEEeCCchhHHHHH
Q 007641 388 KRTRVVLDVGCGVASFGGFLF--D----RGVLTMSFAPKDEHEAQ 426 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La--~----r~V~giDisp~di~~aq 426 (595)
...-++-|-.||.|.++--|. . ++|++-||++..+..|+
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~ 94 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELAR 94 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHH
Confidence 446789999999998664432 2 28999999988775554
No 458
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=23.15 E-value=1e+02 Score=29.31 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=26.6
Q ss_pred CCCCC-CceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 447 LPFPG-IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 447 LPfpd-~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
.+.+. ..+|++++.. + ..+......|+|||++++...
T Consensus 50 ~~~~~~~~~Dilv~l~--------~-~~~~~~~~~l~~~g~vi~ns~ 87 (173)
T PF01558_consen 50 IPSPPVGEADILVALD--------P-EALERHLKGLKPGGVVIINSS 87 (173)
T ss_dssp SSSS-TSSESEEEESS--------H-HHHHHCGTTCETTEEEEEETT
T ss_pred ccCcccCCCCEEEEcC--------H-HHHHHHhcCcCcCeEEEEECC
Confidence 34433 7899999853 2 444477888999999999854
No 459
>COG4889 Predicted helicase [General function prediction only]
Probab=23.11 E-value=3.9e+02 Score=33.16 Aligned_cols=96 Identities=14% Similarity=0.203 Sum_probs=54.0
Q ss_pred EEECCCCch------hHHHHhhCCcEEEeCCchhHHHHHHHHHHHcCCCee-EeecCCCCCCCCCCceeEEEecccCccc
Q 007641 394 LDVGCGVAS------FGGFLFDRGVLTMSFAPKDEHEAQVQFALERGIPAI-SAVMGTERLPFPGIVFDAVHCARCRVPW 466 (595)
Q Consensus 394 LDIGCGtG~------~a~~La~r~V~giDisp~di~~aqvq~A~ergi~~~-~~v~d~~~LPfpd~sFDlV~~~~c~v~~ 466 (595)
|=+.||||- ++..|+...++-+=.|-..++......+.+..+++. ..++...... .+-+=|.++..-++-
T Consensus 185 LIMAcGTGKTfTsLkisEala~~~iL~LvPSIsLLsQTlrew~~~~~l~~~a~aVcSD~kvs---rs~eDik~sdl~~p~ 261 (1518)
T COG4889 185 LIMACGTGKTFTSLKISEALAAARILFLVPSISLLSQTLREWTAQKELDFRASAVCSDDKVS---RSAEDIKASDLPIPV 261 (1518)
T ss_pred EEEecCCCccchHHHHHHHHhhhheEeecchHHHHHHHHHHHhhccCccceeEEEecCcccc---ccccccccccCCCCC
Confidence 446788883 334444445554444444555555556655555432 2333333222 223344444422333
Q ss_pred ccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 467 HIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 467 h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
..+...+|.++...-|+.|.+++..+
T Consensus 262 sT~~~~il~~~~~~~k~~~~~vvFsT 287 (1518)
T COG4889 262 STDLEDILSEMEHRQKANGLTVVFST 287 (1518)
T ss_pred cccHHHHHHHHHHhhccCCcEEEEEc
Confidence 44678999999999999999988654
No 460
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=23.06 E-value=7.6e+02 Score=25.80 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=35.3
Q ss_pred HHHHHHHhcccccCCCCCCEEEEECCCCchhHHHHhhC---CcEEEeCCchhHHHHH
Q 007641 373 YIDFIQESVPDVAWGKRTRVVLDVGCGVASFGGFLFDR---GVLTMSFAPKDEHEAQ 426 (595)
Q Consensus 373 yid~L~~~L~~l~~~~~~~rVLDIGCGtG~~a~~La~r---~V~giDisp~di~~aq 426 (595)
+.+.|.+....+ ...-|++||.|.|.+++.++.+ .+..+++++..+..-|
T Consensus 38 lT~KIvK~A~~~----~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ 90 (326)
T KOG0821|consen 38 LTDKIVKKAGNL----TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQ 90 (326)
T ss_pred HHHHHHHhcccc----ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHH
Confidence 344555554432 2567999999999999999875 5677788877765443
No 461
>KOG4075 consensus Cytochrome c oxidase, subunit IV/COX5b [Energy production and conversion]
Probab=22.75 E-value=66 Score=31.48 Aligned_cols=28 Identities=25% Similarity=0.171 Sum_probs=20.8
Q ss_pred cccCCcccceehhh--hHHHHH-HHHHHhhh
Q 007641 12 RRSASSYCSTVTIT--VFVALC-LVGVWMMT 39 (595)
Q Consensus 12 ~~~~~~~~~~~~~~--~~~~~~-~~g~w~~~ 39 (595)
|++.|++--||.+| +|++|| +|++||..
T Consensus 92 ~~~~~~ewKtv~g~~~~f~Gl~~~v~l~~~v 122 (167)
T KOG4075|consen 92 RNRGSNEWKTVFGVAGFFLGLTISVILFGKV 122 (167)
T ss_pred ccCCCCcccchhhHHHHHHHHHHHHHHHHhh
Confidence 46688999998855 455555 58999987
No 462
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=22.36 E-value=6e+02 Score=26.67 Aligned_cols=90 Identities=11% Similarity=0.036 Sum_probs=50.4
Q ss_pred CEEEEECCC-Cc-hhHHHHhhC--CcEEEeCCchhHHHHHHHHHH-HcCCCeeEeecCCCC------CCCCCCceeEEEe
Q 007641 391 RVVLDVGCG-VA-SFGGFLFDR--GVLTMSFAPKDEHEAQVQFAL-ERGIPAISAVMGTER------LPFPGIVFDAVHC 459 (595)
Q Consensus 391 ~rVLDIGCG-tG-~~a~~La~r--~V~giDisp~di~~aqvq~A~-ergi~~~~~v~d~~~------LPfpd~sFDlV~~ 459 (595)
.+|+=|||| .| .++.+|++. .|+.++-... .++..+ +.|+... ....... .+-+...||+|+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~-----~~~~i~~~~Gl~i~-~~g~~~~~~~~~~~~~~~~~~D~viv 76 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQ-----RLAAYQQAGGLTLV-EQGQASLYAIPAETADAAEPIHRLLL 76 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechH-----HHHHHhhcCCeEEe-eCCcceeeccCCCCcccccccCEEEE
Confidence 478999998 34 467777765 5777666431 122122 3343221 0111000 1111246999987
Q ss_pred cccCcccccCHHHHHHHHHHhccCCcEEEEE
Q 007641 460 ARCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (595)
Q Consensus 460 ~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis 490 (595)
.- - ..+...++..+..+|.|+..+++.
T Consensus 77 ~v---K-~~~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 77 AC---K-AYDAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred EC---C-HHhHHHHHHHHHhhCCCCCEEEEE
Confidence 42 1 124568888999999999877665
No 463
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=22.31 E-value=4.3e+02 Score=29.11 Aligned_cols=93 Identities=11% Similarity=0.078 Sum_probs=53.1
Q ss_pred CCCCEEEEECCC-CchhHHHHhh----CCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCC-----CCCCCCceeEE
Q 007641 388 KRTRVVLDVGCG-VASFGGFLFD----RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER-----LPFPGIVFDAV 457 (595)
Q Consensus 388 ~~~~rVLDIGCG-tG~~a~~La~----r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~-----LPfpd~sFDlV 457 (595)
.++.+|.=+||| .|..+..-+. ..|+++|+.+ .....|++.|....+-..+... ..+-++-.|.+
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~-----~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~ 258 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINP-----EKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYA 258 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCH-----HHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEE
Confidence 467889999997 4443333232 2899999985 4556777777543222211100 01112234444
Q ss_pred EecccCcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 458 ~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
+-. ......++....++.++|..++..-
T Consensus 259 ~e~-------~G~~~~~~~al~~~~~~G~~v~iGv 286 (366)
T COG1062 259 FEC-------VGNVEVMRQALEATHRGGTSVIIGV 286 (366)
T ss_pred EEc-------cCCHHHHHHHHHHHhcCCeEEEEec
Confidence 321 1223578888888888999998853
No 464
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=22.05 E-value=5.9e+02 Score=26.01 Aligned_cols=90 Identities=18% Similarity=0.120 Sum_probs=47.9
Q ss_pred EEEEECCCC-c-hhHHHHhhC--CcEEEeCCchhHHHHHHHHHHHcCCCee---Eee--cCCCCCCCCCCceeEEEeccc
Q 007641 392 VVLDVGCGV-A-SFGGFLFDR--GVLTMSFAPKDEHEAQVQFALERGIPAI---SAV--MGTERLPFPGIVFDAVHCARC 462 (595)
Q Consensus 392 rVLDIGCGt-G-~~a~~La~r--~V~giDisp~di~~aqvq~A~ergi~~~---~~v--~d~~~LPfpd~sFDlV~~~~c 462 (595)
+|+=||+|. | .++..|++. .|+.++..+.. .+.....++... ... ....... ....+|+|+..-
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~d~vila~- 74 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAH-----LDALNENGLRLEDGEITVPVLAADDPA-ELGPQDLVILAV- 74 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHH-----HHHHHHcCCcccCCceeecccCCCChh-HcCCCCEEEEec-
Confidence 578899874 3 355555554 67777764322 222233344220 000 0011111 115689998753
Q ss_pred CcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 463 RVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 463 ~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
. ..+...++..+...|.++..+++..
T Consensus 75 --k-~~~~~~~~~~l~~~l~~~~~iv~~~ 100 (304)
T PRK06522 75 --K-AYQLPAALPSLAPLLGPDTPVLFLQ 100 (304)
T ss_pred --c-cccHHHHHHHHhhhcCCCCEEEEec
Confidence 2 2245678888888888877666543
No 465
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=21.91 E-value=6.8e+02 Score=23.61 Aligned_cols=66 Identities=9% Similarity=-0.077 Sum_probs=44.1
Q ss_pred CCceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeCCCCC--cCchhHHHHHHHHHHHHHcCCEEEEEe
Q 007641 451 GIVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPVYQ--KLPEDVEIWNAMSQLIKAMCWELVSIS 523 (595)
Q Consensus 451 d~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~~~--~l~e~i~~w~~le~Lak~~Gw~~v~~~ 523 (595)
+...|+|+..+ --...+....|-.+.+.|..+|.+++..|-.-+ +... ..+.+.+..+|+......
T Consensus 43 ddvvD~vllWw--R~~DgDL~D~LvDa~~~L~d~G~IWvltPK~gr~g~V~~-----~~I~eaA~taGL~~t~~~ 110 (127)
T PF11253_consen 43 DDVVDVVLLWW--RDDDGDLVDALVDARTNLADDGVIWVLTPKAGRPGHVEP-----SDIREAAPTAGLVQTKSC 110 (127)
T ss_pred cccccEEEEEE--ECCcchHHHHHHHHHhhhcCCCEEEEEccCCCCCCCCCH-----HHHHHHHhhcCCeeeeee
Confidence 35678887643 111224568888899999999999988764322 1222 468888999998866553
No 466
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=21.85 E-value=4.8e+02 Score=26.87 Aligned_cols=88 Identities=11% Similarity=0.013 Sum_probs=46.2
Q ss_pred CCEEEEE--CCC-CchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC------CCCCCCCCceeEE
Q 007641 390 TRVVLDV--GCG-VASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT------ERLPFPGIVFDAV 457 (595)
Q Consensus 390 ~~rVLDI--GCG-tG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~------~~LPfpd~sFDlV 457 (595)
+..+|=+ |+| .|.++..+++. .|++++.++ ....++++.|....+..... ..+ .+...+|+|
T Consensus 143 ~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~-----~~~~~~~~~g~~~~i~~~~~~~~~~v~~~-~~~~~~d~v 216 (324)
T cd08291 143 GAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRK-----EQVDLLKKIGAEYVLNSSDPDFLEDLKEL-IAKLNATIF 216 (324)
T ss_pred CCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHHcCCcEEEECCCccHHHHHHHH-hCCCCCcEE
Confidence 3344444 443 44555555553 466665553 34455666665433322110 011 122358988
Q ss_pred EecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 458 HCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 458 ~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
+-.- - ...+..+.+.|++||.|++..
T Consensus 217 id~~---g-----~~~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 217 FDAV---G-----GGLTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred EECC---C-----cHHHHHHHHhhCCCCEEEEEE
Confidence 8532 1 123455688899999998865
No 467
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=21.46 E-value=5.7e+02 Score=25.65 Aligned_cols=91 Identities=19% Similarity=0.200 Sum_probs=46.7
Q ss_pred CCCEEEEECC--CCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCC--CCCCCCCceeEEEecc
Q 007641 389 RTRVVLDVGC--GVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTE--RLPFPGIVFDAVHCAR 461 (595)
Q Consensus 389 ~~~rVLDIGC--GtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~--~LPfpd~sFDlV~~~~ 461 (595)
++.+||-+|+ +.|..+..+++. .|+++.-+ ....++.+.++...+...... ......+.+|+|+...
T Consensus 143 ~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~~~ 216 (319)
T cd08267 143 PGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST------RNAELVRSLGADEVIDYTTEDFVALTAGGEKYDVIFDAV 216 (319)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH------HHHHHHHHcCCCEeecCCCCCcchhccCCCCCcEEEECC
Confidence 5789999997 245555556653 45554421 233555556653222111100 1112335689998632
Q ss_pred cCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 462 CRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 462 c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
-. ....+.. ....|+++|.|+...
T Consensus 217 --~~---~~~~~~~-~~~~l~~~g~~i~~g 240 (319)
T cd08267 217 --GN---SPFSLYR-ASLALKPGGRYVSVG 240 (319)
T ss_pred --Cc---hHHHHHH-hhhccCCCCEEEEec
Confidence 11 1122222 233399999999764
No 468
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=21.20 E-value=4.2e+02 Score=27.34 Aligned_cols=94 Identities=20% Similarity=0.093 Sum_probs=48.0
Q ss_pred CCCEEEEECC--CCchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCC------CCC-CCCCCceeE
Q 007641 389 RTRVVLDVGC--GVASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGT------ERL-PFPGIVFDA 456 (595)
Q Consensus 389 ~~~rVLDIGC--GtG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~------~~L-Pfpd~sFDl 456 (595)
++.+||=+|+ +.|.++..+++. .++++.-..... .....++...|....+..... ..+ ....+.||+
T Consensus 146 ~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~d~ 224 (341)
T cd08290 146 PGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDL-EELKERLKALGADHVLTEEELRSLLATELLKSAPGGRPKL 224 (341)
T ss_pred CCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcc-hhHHHHHHhcCCCEEEeCcccccccHHHHHHHHcCCCceE
Confidence 5788998886 345555555553 344443332110 122344545554432221110 000 111125899
Q ss_pred EEecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 457 VHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 457 V~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
|+... . . ..+..+.+.|+++|.|+...
T Consensus 225 vld~~---g---~--~~~~~~~~~l~~~G~~v~~g 251 (341)
T cd08290 225 ALNCV---G---G--KSATELARLLSPGGTMVTYG 251 (341)
T ss_pred EEECc---C---c--HhHHHHHHHhCCCCEEEEEe
Confidence 88632 1 1 23456789999999999764
No 469
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=20.94 E-value=4.3e+02 Score=29.59 Aligned_cols=103 Identities=18% Similarity=0.157 Sum_probs=54.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhC----CcEEEeCCchhHHHHHH--HHHHHc----CC-C-eeEeecCCCCCC----CCC
Q 007641 388 KRTRVVLDVGCGVASFGGFLFDR----GVLTMSFAPKDEHEAQV--QFALER----GI-P-AISAVMGTERLP----FPG 451 (595)
Q Consensus 388 ~~~~rVLDIGCGtG~~a~~La~r----~V~giDisp~di~~aqv--q~A~er----gi-~-~~~~v~d~~~LP----fpd 451 (595)
++.....|+|.|.|.....++.. .-+|+.+...-..-+.. .+-... |- + .+..+.+..-.| .-.
T Consensus 191 g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI~ 270 (419)
T KOG3924|consen 191 GPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEIQ 270 (419)
T ss_pred CCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHHh
Confidence 46788999999999877666552 34566655432222222 221111 22 1 111111111111 112
Q ss_pred CceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeC
Q 007641 452 IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSAT 492 (595)
Q Consensus 452 ~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~p 492 (595)
...++|+.+. +.+.++...=+.++..-+++|-+++-..+
T Consensus 271 ~eatvi~vNN--~~Fdp~L~lr~~eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 271 TEATVIFVNN--VAFDPELKLRSKEILQKCKDGTRIISSKP 309 (419)
T ss_pred hcceEEEEec--ccCCHHHHHhhHHHHhhCCCcceEecccc
Confidence 3467888776 44444444445588888999988875544
No 470
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=20.77 E-value=1.3e+02 Score=34.23 Aligned_cols=82 Identities=17% Similarity=0.113 Sum_probs=47.9
Q ss_pred CCCEEEEECCCCchhHHHHhh------CCcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCCCCCCCCceeEEEeccc
Q 007641 389 RTRVVLDVGCGVASFGGFLFD------RGVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTERLPFPGIVFDAVHCARC 462 (595)
Q Consensus 389 ~~~rVLDIGCGtG~~a~~La~------r~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~LPfpd~sFDlV~~~~c 462 (595)
.+++|+=||+|. ++..++. ..|++++.++... ..+...|.... ....+ -...|+|++..
T Consensus 253 aGKtVgVIG~G~--IGr~vA~rL~a~Ga~ViV~e~dp~~a-----~~A~~~G~~~~----~leel---l~~ADIVI~at- 317 (476)
T PTZ00075 253 AGKTVVVCGYGD--VGKGCAQALRGFGARVVVTEIDPICA-----LQAAMEGYQVV----TLEDV---VETADIFVTAT- 317 (476)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCchhH-----HHHHhcCceec----cHHHH---HhcCCEEEECC-
Confidence 578999999995 4444433 2688888776421 11222343211 11111 13589998752
Q ss_pred CcccccCHHHHH-HHHHHhccCCcEEEEEe
Q 007641 463 RVPWHIEGGKLL-LELNRVLRPGGFFIWSA 491 (595)
Q Consensus 463 ~v~~h~d~~~lL-~El~RvLKPGG~Lvis~ 491 (595)
....++ .+....||||++|+-+.
T Consensus 318 ------Gt~~iI~~e~~~~MKpGAiLINvG 341 (476)
T PTZ00075 318 ------GNKDIITLEHMRRMKNNAIVGNIG 341 (476)
T ss_pred ------CcccccCHHHHhccCCCcEEEEcC
Confidence 112344 47888999999999764
No 471
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=20.70 E-value=4e+02 Score=27.34 Aligned_cols=89 Identities=21% Similarity=0.224 Sum_probs=49.6
Q ss_pred CCEEEEECC--CCchhHHHHhhC--C--cEEEeCCchhHHHHHHHHHHHcCCCeeEeecC-C-CCC-CCCCCceeEEEec
Q 007641 390 TRVVLDVGC--GVASFGGFLFDR--G--VLTMSFAPKDEHEAQVQFALERGIPAISAVMG-T-ERL-PFPGIVFDAVHCA 460 (595)
Q Consensus 390 ~~rVLDIGC--GtG~~a~~La~r--~--V~giDisp~di~~aqvq~A~ergi~~~~~v~d-~-~~L-Pfpd~sFDlV~~~ 460 (595)
+.+||=.|+ +.|..+..+++. + |+++.-+ ..+.+++++.|...++.... . ..+ ....+.+|+|+-.
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~-----~~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~vd~vl~~ 223 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASR-----PESQEWVLELGAHHVIDHSKPLKAQLEKLGLEAVSYVFSL 223 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCc-----HHHHHHHHHcCCCEEEECCCCHHHHHHHhcCCCCCEEEEc
Confidence 678888885 455566666652 3 4444333 22345555566543322111 0 000 0223458888742
Q ss_pred ccCcccccCHHHHHHHHHHhccCCcEEEEE
Q 007641 461 RCRVPWHIEGGKLLLELNRVLRPGGFFIWS 490 (595)
Q Consensus 461 ~c~v~~h~d~~~lL~El~RvLKPGG~Lvis 490 (595)
. .....+..+.++|+++|+|+..
T Consensus 224 ~-------~~~~~~~~~~~~l~~~G~~v~~ 246 (336)
T TIGR02817 224 T-------HTDQHFKEIVELLAPQGRFALI 246 (336)
T ss_pred C-------CcHHHHHHHHHHhccCCEEEEE
Confidence 1 1235678899999999999865
No 472
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=20.61 E-value=9.1e+02 Score=25.93 Aligned_cols=94 Identities=15% Similarity=0.157 Sum_probs=51.4
Q ss_pred CCEEEEECCCC-c-hhHHHHhhC--CcEEEeCCchhHHHHHHHHH------HHcCCCee-----EeecCCCCCCCCCCce
Q 007641 390 TRVVLDVGCGV-A-SFGGFLFDR--GVLTMSFAPKDEHEAQVQFA------LERGIPAI-----SAVMGTERLPFPGIVF 454 (595)
Q Consensus 390 ~~rVLDIGCGt-G-~~a~~La~r--~V~giDisp~di~~aqvq~A------~ergi~~~-----~~v~d~~~LPfpd~sF 454 (595)
.++|-=||+|+ | .++..++.+ .|+..|+++..+..+..... .+.++... +.. ...+.-.-..-
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~--~~~l~~av~~a 84 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRF--VATIEACVADA 84 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhcee--cCCHHHHhcCC
Confidence 56788899983 2 355555554 78999999865544322111 11221100 000 01110001245
Q ss_pred eEEEecccCcccccCH-HHHHHHHHHhccCCcEEE
Q 007641 455 DAVHCARCRVPWHIEG-GKLLLELNRVLRPGGFFI 488 (595)
Q Consensus 455 DlV~~~~c~v~~h~d~-~~lL~El~RvLKPGG~Lv 488 (595)
|+|+-+ ++..++. ..++.++.++++|+-.|.
T Consensus 85 DlViEa---vpE~l~vK~~lf~~l~~~~~~~aIla 116 (321)
T PRK07066 85 DFIQES---APEREALKLELHERISRAAKPDAIIA 116 (321)
T ss_pred CEEEEC---CcCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 777763 4555544 688899999999987444
No 473
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=20.54 E-value=5.9e+02 Score=25.79 Aligned_cols=90 Identities=21% Similarity=0.192 Sum_probs=47.2
Q ss_pred CCCEEEEECCC-CchhHHHHhhC---CcEEEeCCchhHHHHHHHHHHHcCCCeeEeecCCCC----C-C-CCCCceeEEE
Q 007641 389 RTRVVLDVGCG-VASFGGFLFDR---GVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTER----L-P-FPGIVFDAVH 458 (595)
Q Consensus 389 ~~~rVLDIGCG-tG~~a~~La~r---~V~giDisp~di~~aqvq~A~ergi~~~~~v~d~~~----L-P-fpd~sFDlV~ 458 (595)
++.+||=.|+| .|..+..+++. .|+.++.+ ....+++...+...++....... + . .....+|+|+
T Consensus 160 ~g~~vli~g~g~~g~~~~~~a~~~G~~v~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 234 (336)
T cd08276 160 PGDTVLVQGTGGVSLFALQFAKAAGARVIATSSS-----DEKLERAKALGADHVINYRTTPDWGEEVLKLTGGRGVDHVV 234 (336)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHcCCCEEEcCCcccCHHHHHHHHcCCCCCcEEE
Confidence 46677755543 23333334442 45555544 23345555555443322211010 0 0 1234689888
Q ss_pred ecccCcccccCHHHHHHHHHHhccCCcEEEEEe
Q 007641 459 CARCRVPWHIEGGKLLLELNRVLRPGGFFIWSA 491 (595)
Q Consensus 459 ~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~ 491 (595)
-.. ....+..+.+.|+++|.|+...
T Consensus 235 ~~~--------~~~~~~~~~~~l~~~G~~v~~g 259 (336)
T cd08276 235 EVG--------GPGTLAQSIKAVAPGGVISLIG 259 (336)
T ss_pred ECC--------ChHHHHHHHHhhcCCCEEEEEc
Confidence 531 1246778899999999999764
No 474
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=20.34 E-value=1.2e+02 Score=26.69 Aligned_cols=39 Identities=23% Similarity=0.209 Sum_probs=24.0
Q ss_pred CceeEEEecccCcccccCHHHHHHHHHHhccCCcEEEEEeCCC
Q 007641 452 IVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFIWSATPV 494 (595)
Q Consensus 452 ~sFDlV~~~~c~v~~h~d~~~lL~El~RvLKPGG~Lvis~pp~ 494 (595)
..||++++.. . ..=...+|..+.-.||-||.+++..|+.
T Consensus 10 ~e~~~~i~d~-~---~g~~pnal~a~~gtv~gGGllill~p~~ 48 (92)
T PF08351_consen 10 QEFDLLIFDA-F---EGFDPNALAALAGTVRGGGLLILLLPPW 48 (92)
T ss_dssp --BSSEEEE--S---S---HHHHHHHHTTB-TT-EEEEEES-G
T ss_pred CccCEEEEEc-c---CCCCHHHHHHHhcceecCeEEEEEcCCH
Confidence 5688888753 1 1112577888899999999999998874
Done!