Query 007642
Match_columns 595
No_of_seqs 477 out of 1705
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 06:53:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007642.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007642hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wd2_A Ariadne-1 protein homol 99.8 4.1E-21 1.4E-25 149.1 0.8 57 294-354 1-59 (60)
2 1wim_A KIAA0161 protein; ring 99.6 1E-15 3.5E-20 130.5 5.5 88 139-227 3-93 (94)
3 2ct7_A Ring finger protein 31; 99.2 3.1E-13 1.1E-17 113.1 -3.2 77 210-290 5-85 (86)
4 4ap4_A E3 ubiquitin ligase RNF 99.1 4.3E-12 1.5E-16 114.1 0.3 117 139-312 5-126 (133)
5 2jmo_A Parkin; IBR, E3 ligase, 99.0 4.1E-12 1.4E-16 104.7 -4.8 68 206-277 2-75 (80)
6 3hcs_A TNF receptor-associated 98.7 3.8E-09 1.3E-13 99.4 2.8 84 137-245 14-97 (170)
7 2ecy_A TNF receptor-associated 98.6 5.4E-08 1.9E-12 76.6 5.4 52 138-201 12-63 (66)
8 1rmd_A RAG1; V(D)J recombinati 98.6 5.7E-08 2E-12 85.4 5.8 81 140-244 22-102 (116)
9 2egp_A Tripartite motif-contai 98.6 2.5E-08 8.6E-13 81.2 3.2 57 139-201 10-66 (79)
10 2ecw_A Tripartite motif-contai 98.6 7.5E-08 2.6E-12 79.3 6.0 56 139-201 17-72 (85)
11 2yu4_A E3 SUMO-protein ligase 98.6 4.4E-08 1.5E-12 83.0 4.7 57 139-200 5-63 (94)
12 3ztg_A E3 ubiquitin-protein li 98.6 4.6E-08 1.6E-12 82.3 4.7 49 139-198 11-60 (92)
13 2ecv_A Tripartite motif-contai 98.6 3.9E-08 1.3E-12 81.0 4.2 56 139-201 17-72 (85)
14 3hct_A TNF receptor-associated 98.5 1.3E-07 4.4E-12 83.5 7.5 84 137-245 14-97 (118)
15 1t1h_A Gspef-atpub14, armadill 98.5 6.3E-08 2.2E-12 78.8 4.7 65 139-215 6-71 (78)
16 2ct2_A Tripartite motif protei 98.5 8.4E-08 2.9E-12 79.7 5.3 60 139-206 13-74 (88)
17 2ysl_A Tripartite motif-contai 98.5 6.4E-08 2.2E-12 77.6 4.2 54 138-201 17-70 (73)
18 2d8t_A Dactylidin, ring finger 98.5 7.9E-08 2.7E-12 76.8 4.6 55 138-205 12-66 (71)
19 1jm7_A BRCA1, breast cancer ty 98.5 1.6E-07 5.5E-12 81.7 6.1 69 141-219 21-90 (112)
20 2ysj_A Tripartite motif-contai 98.5 1.6E-07 5.6E-12 73.0 5.4 45 138-190 17-61 (63)
21 3lrq_A E3 ubiquitin-protein li 98.5 9.7E-08 3.3E-12 81.8 4.4 52 140-203 21-73 (100)
22 3knv_A TNF receptor-associated 98.5 2.6E-08 8.9E-13 90.9 0.7 84 139-244 29-118 (141)
23 1e4u_A Transcriptional repress 98.4 1.3E-07 4.3E-12 77.4 4.5 54 139-202 9-64 (78)
24 2djb_A Polycomb group ring fin 98.4 1.7E-07 5.7E-12 75.1 4.8 52 139-203 13-65 (72)
25 3l11_A E3 ubiquitin-protein li 98.4 8E-08 2.7E-12 84.3 3.1 51 138-200 12-62 (115)
26 3fl2_A E3 ubiquitin-protein li 98.4 1.1E-07 3.7E-12 84.7 3.8 49 140-200 51-99 (124)
27 2y43_A E3 ubiquitin-protein li 98.4 1.4E-07 4.7E-12 80.5 4.2 65 140-217 21-87 (99)
28 2csy_A Zinc finger protein 183 98.4 2.8E-07 9.4E-12 75.6 5.8 49 138-199 12-60 (81)
29 2ecj_A Tripartite motif-contai 98.4 3E-07 1E-11 70.1 5.3 44 139-190 13-56 (58)
30 2kr4_A Ubiquitin conjugation f 98.4 2.8E-07 9.5E-12 76.6 5.4 50 139-201 12-61 (85)
31 2yur_A Retinoblastoma-binding 98.4 3.1E-07 1.1E-11 74.0 5.2 49 139-198 13-62 (74)
32 3ng2_A RNF4, snurf, ring finge 98.4 9.7E-08 3.3E-12 76.0 1.8 55 139-204 8-67 (71)
33 4ayc_A E3 ubiquitin-protein li 98.3 1.9E-07 6.5E-12 84.8 3.6 46 141-199 53-98 (138)
34 2xeu_A Ring finger protein 4; 98.3 1.2E-07 4E-12 73.7 1.5 54 140-204 2-60 (64)
35 2kre_A Ubiquitin conjugation f 98.3 2.3E-07 7.7E-12 79.6 3.3 50 139-201 27-76 (100)
36 2ea6_A Ring finger protein 4; 98.3 3E-07 1E-11 72.5 3.7 52 138-200 12-68 (69)
37 1g25_A CDK-activating kinase a 98.3 1.5E-07 5.3E-12 73.7 1.9 54 141-204 3-59 (65)
38 2c2l_A CHIP, carboxy terminus 98.3 5.9E-07 2E-11 90.6 6.3 52 138-201 205-256 (281)
39 2ecm_A Ring finger and CHY zin 98.3 4.7E-07 1.6E-11 68.2 4.0 49 140-199 4-54 (55)
40 1z6u_A NP95-like ring finger p 98.3 3.5E-07 1.2E-11 84.3 3.8 49 141-201 78-126 (150)
41 1wgm_A Ubiquitin conjugation f 98.3 6.2E-07 2.1E-11 76.5 5.0 50 139-201 20-70 (98)
42 2ckl_A Polycomb group ring fin 98.3 3.7E-07 1.3E-11 79.1 3.4 48 140-200 14-62 (108)
43 2kiz_A E3 ubiquitin-protein li 98.3 1.1E-06 3.8E-11 69.5 5.6 51 139-200 12-63 (69)
44 1jm7_B BARD1, BRCA1-associated 98.2 5.2E-07 1.8E-11 79.5 2.4 45 141-200 22-67 (117)
45 2ect_A Ring finger protein 126 98.2 1.1E-06 3.8E-11 71.3 3.9 53 139-202 13-66 (78)
46 3htk_C E3 SUMO-protein ligase 98.1 1.4E-06 4.9E-11 86.3 4.9 53 140-201 180-233 (267)
47 2l0b_A E3 ubiquitin-protein li 98.1 1.4E-06 4.8E-11 73.1 4.1 51 139-200 38-89 (91)
48 1bor_A Transcription factor PM 98.1 6.2E-07 2.1E-11 68.2 1.3 45 139-199 4-48 (56)
49 1iym_A EL5; ring-H2 finger, ub 98.1 1.6E-06 5.3E-11 65.3 3.3 49 140-199 4-54 (55)
50 2ep4_A Ring finger protein 24; 98.1 3.5E-06 1.2E-10 67.5 4.9 51 139-200 13-64 (74)
51 1chc_A Equine herpes virus-1 r 98.1 2.2E-06 7.4E-11 67.5 3.6 47 140-199 4-51 (68)
52 1x4j_A Ring finger protein 38; 98.0 2.3E-06 8E-11 68.9 3.1 51 139-200 21-72 (75)
53 2f42_A STIP1 homology and U-bo 98.0 2.8E-06 9.7E-11 80.1 3.6 51 139-201 104-154 (179)
54 1v87_A Deltex protein 2; ring- 98.0 4.8E-06 1.7E-10 72.6 4.5 54 141-200 25-94 (114)
55 2ecn_A Ring finger protein 141 98.0 1.5E-06 5.3E-11 68.9 1.1 48 139-200 13-60 (70)
56 2ckl_B Ubiquitin ligase protei 97.9 4.6E-06 1.6E-10 77.8 3.8 48 140-199 53-101 (165)
57 4ic3_A E3 ubiquitin-protein li 97.8 9.2E-06 3.2E-10 65.4 2.5 43 141-200 24-67 (74)
58 2ecg_A Baculoviral IAP repeat- 97.7 2E-05 6.7E-10 63.5 3.2 43 141-200 25-68 (75)
59 2ecl_A Ring-box protein 2; RNF 97.7 2.8E-05 9.6E-10 63.7 4.0 51 140-201 14-77 (81)
60 1nj3_A NPL4; NZF domain, rubre 97.7 1.8E-05 6.2E-10 52.5 2.2 27 569-595 4-30 (31)
61 4ap4_A E3 ubiquitin ligase RNF 97.6 1.9E-05 6.4E-10 70.3 2.0 56 138-204 69-129 (133)
62 2vje_A E3 ubiquitin-protein li 97.6 3.6E-05 1.2E-09 60.1 2.9 49 138-199 5-56 (64)
63 3a9j_C Mitogen-activated prote 97.5 4.5E-05 1.5E-09 51.7 2.0 26 570-595 7-32 (34)
64 2vje_B MDM4 protein; proto-onc 97.4 6.1E-05 2.1E-09 58.5 2.9 47 140-199 6-55 (63)
65 2crc_A Ubiquitin conjugating e 97.4 9.4E-05 3.2E-09 54.9 3.5 26 570-595 9-34 (52)
66 2d9g_A YY1-associated factor 2 97.4 7.9E-05 2.7E-09 55.7 3.1 28 568-595 8-35 (53)
67 2yho_A E3 ubiquitin-protein li 97.4 4.6E-05 1.6E-09 62.1 2.0 43 141-200 18-61 (79)
68 2y1n_A E3 ubiquitin-protein li 97.4 8.6E-05 2.9E-09 78.0 4.4 49 141-201 332-380 (389)
69 2ea5_A Cell growth regulator w 97.4 0.00015 5.2E-09 57.2 4.7 45 139-200 13-58 (68)
70 3dpl_R Ring-box protein 1; ubi 97.3 0.00017 5.7E-09 62.2 4.3 49 140-199 36-100 (106)
71 2ct7_A Ring finger protein 31; 97.2 0.00014 4.6E-09 60.3 2.5 48 300-353 26-74 (86)
72 2d8s_A Cellular modulator of i 97.2 0.00042 1.4E-08 56.5 5.4 53 139-200 13-70 (80)
73 3t6p_A Baculoviral IAP repeat- 96.8 0.00029 9.8E-09 73.4 1.5 43 141-200 295-338 (345)
74 2jmo_A Parkin; IBR, E3 ligase, 96.6 0.00097 3.3E-08 54.4 2.9 40 299-338 25-70 (80)
75 4a0k_B E3 ubiquitin-protein li 96.5 0.00046 1.6E-08 60.5 0.4 48 141-199 48-111 (117)
76 2bay_A PRE-mRNA splicing facto 96.5 0.0017 5.6E-08 50.1 3.2 48 141-201 3-51 (61)
77 3gj3_B Nuclear pore complex pr 96.1 0.002 6.7E-08 43.1 1.7 27 569-595 5-31 (33)
78 3b08_B Ranbp-type and C3HC4-ty 95.9 0.0031 1.1E-07 48.7 2.0 26 570-595 7-32 (64)
79 2ct0_A Non-SMC element 1 homol 95.5 0.0091 3.1E-07 47.8 3.6 50 140-199 14-63 (74)
80 3k1l_B Fancl; UBC, ring, RWD, 94.4 0.047 1.6E-06 56.0 6.1 112 66-201 247-374 (381)
81 1v92_A NSFL1 cofactor P47; 3-h 94.0 0.086 2.9E-06 37.7 5.1 41 79-119 5-45 (46)
82 3gj5_B Nuclear pore complex pr 93.8 0.025 8.5E-07 38.0 1.8 26 569-594 5-30 (34)
83 1wd2_A Ariadne-1 protein homol 93.0 0.043 1.5E-06 41.9 2.2 37 229-269 5-44 (60)
84 2ebq_A Nuclear pore complex pr 93.0 0.069 2.4E-06 38.5 3.1 25 570-594 10-34 (47)
85 3vk6_A E3 ubiquitin-protein li 92.7 0.067 2.3E-06 44.9 3.1 46 143-199 3-48 (101)
86 2dal_A Protein KIAA0794; FAS a 92.5 0.2 7E-06 38.4 5.5 42 78-119 14-55 (62)
87 2jun_A Midline-1; B-BOX, TRIM, 92.5 0.06 2.1E-06 45.2 2.6 34 140-174 2-37 (101)
88 2cs3_A Protein C14ORF4, MY039 91.5 0.32 1.1E-05 38.8 5.4 52 136-191 10-63 (93)
89 1vyx_A ORF K3, K3RING; zinc-bi 90.6 0.3 1E-05 37.1 4.5 49 140-199 5-58 (60)
90 2jun_A Midline-1; B-BOX, TRIM, 90.5 0.013 4.4E-07 49.5 -3.8 70 250-334 16-87 (101)
91 2ebr_A Nuclear pore complex pr 88.9 0.4 1.4E-05 34.6 3.8 25 570-594 10-34 (47)
92 2dam_A ETEA protein; KIAA0887, 88.3 0.84 2.9E-05 35.5 5.6 41 79-119 18-59 (67)
93 2dzl_A Protein FAM100B; UBA-li 87.2 0.86 2.9E-05 35.3 5.0 39 81-119 19-57 (66)
94 3e21_A HFAF1, FAS-associated f 86.7 0.72 2.5E-05 32.9 3.9 38 79-116 5-43 (45)
95 3gj7_B Nuclear pore complex pr 85.8 0.15 5.2E-06 42.9 0.0 26 570-595 8-33 (98)
96 1wj7_A Hypothetical protein (R 85.3 1.3 4.3E-05 37.5 5.4 40 79-118 39-78 (104)
97 3gj7_B Nuclear pore complex pr 84.6 0.36 1.2E-05 40.6 1.7 26 570-595 71-96 (98)
98 1g25_A CDK-activating kinase a 82.9 0.43 1.5E-05 36.3 1.5 33 255-312 24-56 (65)
99 3lrq_A E3 ubiquitin-protein li 82.2 0.34 1.2E-05 40.5 0.7 34 300-339 23-56 (100)
100 2di0_A Activating signal coint 81.2 3.4 0.00012 32.4 5.9 41 78-118 12-53 (71)
101 2ebv_A Nuclear pore complex pr 80.7 3.6 0.00012 30.8 5.7 25 570-594 30-54 (57)
102 3nw0_A Non-structural maintena 80.5 0.93 3.2E-05 44.3 3.2 50 141-201 180-230 (238)
103 2jrp_A Putative cytoplasmic pr 80.0 0.75 2.6E-05 37.1 1.9 50 300-352 3-57 (81)
104 2k1p_A Zinc finger RAN-binding 79.4 1.1 3.7E-05 29.7 2.3 25 571-595 6-30 (33)
105 1bor_A Transcription factor PM 78.0 1.4 4.7E-05 32.5 2.7 27 256-311 23-49 (56)
106 1x4j_A Ring finger protein 38; 77.4 1.2 4.1E-05 34.8 2.4 36 253-314 39-75 (75)
107 2jne_A Hypothetical protein YF 76.6 0.71 2.4E-05 38.3 0.8 50 300-352 33-87 (101)
108 1z96_A DNA-damage, UBA-domain 76.0 4.6 0.00016 27.3 4.9 35 80-115 5-39 (40)
109 2lk0_A RNA-binding protein 5; 75.3 1 3.4E-05 29.7 1.2 26 570-595 4-29 (32)
110 2ysl_A Tripartite motif-contai 74.3 1.3 4.4E-05 34.2 1.8 32 300-338 21-52 (73)
111 2ckl_B Ubiquitin ligase protei 73.7 0.82 2.8E-05 41.8 0.6 34 300-339 55-88 (165)
112 2ysj_A Tripartite motif-contai 73.1 0.91 3.1E-05 34.1 0.6 32 300-338 21-52 (63)
113 4ayc_A E3 ubiquitin-protein li 72.2 1.2 4.1E-05 39.4 1.3 34 300-340 54-87 (138)
114 2djb_A Polycomb group ring fin 72.1 0.95 3.3E-05 35.1 0.5 33 300-338 16-48 (72)
115 3bvo_A CO-chaperone protein HS 71.3 55 0.0019 30.9 12.8 11 299-309 10-20 (207)
116 3gj8_B Nuclear pore complex pr 71.0 1.6 5.6E-05 36.0 1.8 26 570-595 64-89 (92)
117 1vq8_Z 50S ribosomal protein L 70.5 1.5 5.2E-05 35.5 1.4 30 299-329 27-56 (83)
118 1e4u_A Transcriptional repress 70.4 1.4 4.7E-05 35.2 1.1 35 300-337 12-46 (78)
119 1pft_A TFIIB, PFTFIIBN; N-term 70.1 2.6 9E-05 30.4 2.5 29 299-328 5-34 (50)
120 2jr6_A UPF0434 protein NMA0874 70.0 2.2 7.6E-05 33.2 2.2 28 300-328 9-36 (68)
121 2ect_A Ring finger protein 126 69.9 1.3 4.5E-05 34.7 0.9 29 256-310 35-63 (78)
122 2ckl_A Polycomb group ring fin 68.2 1.3 4.4E-05 37.3 0.5 34 300-339 16-49 (108)
123 1t1h_A Gspef-atpub14, armadill 68.1 1.5 5.2E-05 34.3 0.9 33 300-339 9-41 (78)
124 2ecw_A Tripartite motif-contai 68.0 1.3 4.4E-05 35.1 0.4 33 300-339 20-52 (85)
125 3l11_A E3 ubiquitin-protein li 67.9 2.6 9E-05 35.7 2.5 34 300-340 16-49 (115)
126 3fl2_A E3 ubiquitin-protein li 67.6 1.4 4.8E-05 38.1 0.7 32 300-338 53-84 (124)
127 2ecy_A TNF receptor-associated 67.5 1.5 5.3E-05 33.1 0.8 32 300-338 16-47 (66)
128 2egp_A Tripartite motif-contai 67.2 2.3 7.9E-05 33.2 1.8 33 300-339 13-45 (79)
129 2did_A Tripartite motif protei 67.1 2.6 8.7E-05 30.7 1.9 27 300-334 9-35 (53)
130 1jm7_A BRCA1, breast cancer ty 66.9 1.6 5.3E-05 36.8 0.8 33 300-339 22-54 (112)
131 1fre_A Nuclear factor XNF7; zi 66.7 3.5 0.00012 28.3 2.5 27 300-334 4-30 (42)
132 2yur_A Retinoblastoma-binding 66.7 1.6 5.4E-05 34.1 0.7 34 300-339 16-49 (74)
133 3gj8_B Nuclear pore complex pr 66.7 1.2 4.1E-05 36.9 0.0 26 570-595 7-32 (92)
134 2y43_A E3 ubiquitin-protein li 66.4 1.6 5.4E-05 36.1 0.7 34 300-339 23-56 (99)
135 3ghg_A Fibrinogen alpha chain; 66.0 31 0.001 37.0 10.5 12 510-521 176-187 (562)
136 3ddt_A E3 ubiquitin-protein li 65.6 2.4 8.3E-05 30.1 1.5 26 300-333 7-33 (48)
137 1iym_A EL5; ring-H2 finger, ub 64.9 3.2 0.00011 29.9 2.1 37 300-339 6-42 (55)
138 2k4x_A 30S ribosomal protein S 64.6 1.9 6.4E-05 32.1 0.7 29 299-328 18-46 (55)
139 2csv_A Tripartite motif protei 64.6 2.6 8.8E-05 32.8 1.6 31 300-340 19-49 (72)
140 2ct2_A Tripartite motif protei 63.5 1.8 6.1E-05 34.6 0.5 37 300-339 16-52 (88)
141 2ecm_A Ring finger and CHY zin 62.8 2.3 8E-05 30.6 1.0 37 300-339 6-42 (55)
142 3j20_Y 30S ribosomal protein S 62.4 3.7 0.00013 29.9 2.0 28 299-328 19-47 (50)
143 2ecj_A Tripartite motif-contai 62.4 1.9 6.3E-05 31.5 0.4 32 300-338 16-47 (58)
144 2kiz_A E3 ubiquitin-protein li 62.3 2 6.9E-05 32.7 0.6 36 300-339 15-50 (69)
145 2yrg_A Tripartite motif-contai 62.3 3.5 0.00012 30.9 1.9 27 300-334 15-41 (59)
146 1n0z_A ZNF265; zinc finger, RN 62.3 9.3 0.00032 27.1 4.0 26 570-595 13-40 (45)
147 2d8v_A Zinc finger FYVE domain 62.3 4.2 0.00014 31.2 2.3 33 139-174 6-39 (67)
148 1w7p_D VPS36P, YLR417W; ESCRT- 61.9 1.6 5.6E-05 47.8 0.0 22 572-593 181-202 (566)
149 3bq3_A Defective in cullin ned 61.6 7.7 0.00026 38.5 4.8 43 78-120 14-56 (270)
150 1jm7_B BARD1, BRCA1-associated 61.5 3.5 0.00012 35.2 2.1 33 300-338 23-55 (117)
151 3ng2_A RNF4, snurf, ring finge 61.5 1.7 5.8E-05 33.2 0.0 37 300-338 11-49 (71)
152 2d8t_A Dactylidin, ring finger 61.0 2.2 7.4E-05 32.9 0.5 33 300-339 16-48 (71)
153 4ic3_A E3 ubiquitin-protein li 60.9 2.4 8.3E-05 33.1 0.8 26 256-311 41-67 (74)
154 1chc_A Equine herpes virus-1 r 60.4 2.4 8.4E-05 32.1 0.8 33 300-338 6-38 (68)
155 2d8u_A Ubiquitin ligase TRIM63 59.7 3.8 0.00013 30.9 1.7 27 300-334 9-36 (64)
156 2yvr_A Transcription intermedi 59.4 3.7 0.00013 29.3 1.6 31 300-340 7-38 (50)
157 2csy_A Zinc finger protein 183 59.4 2.4 8.3E-05 33.5 0.6 33 300-339 16-48 (81)
158 2y1n_A E3 ubiquitin-protein li 57.6 8.9 0.0003 40.1 4.6 32 255-311 348-379 (389)
159 1z6u_A NP95-like ring finger p 57.5 2.7 9.1E-05 37.9 0.6 33 300-339 79-111 (150)
160 2ecv_A Tripartite motif-contai 57.4 2.9 0.0001 32.9 0.8 32 300-338 20-51 (85)
161 3knv_A TNF receptor-associated 56.7 2.8 9.6E-05 37.3 0.6 32 300-338 32-63 (141)
162 2ecn_A Ring finger protein 141 55.8 2.9 9.8E-05 31.9 0.4 31 300-338 16-46 (70)
163 3ztg_A E3 ubiquitin-protein li 55.3 2.2 7.6E-05 34.5 -0.3 32 300-337 14-45 (92)
164 3vk6_A E3 ubiquitin-protein li 55.1 2.7 9.1E-05 35.2 0.2 34 301-335 3-46 (101)
165 2xeu_A Ring finger protein 4; 54.9 2.4 8.3E-05 31.5 -0.1 39 300-339 4-43 (64)
166 2jp7_A MRNA export factor MEX6 54.6 26 0.00091 26.0 5.6 41 77-117 4-44 (57)
167 2g3q_A Protein YBL047C; endocy 54.5 21 0.00071 24.6 4.8 36 81-117 6-41 (43)
168 2ea6_A Ring finger protein 4; 54.3 2.7 9.2E-05 31.7 0.1 38 300-338 16-54 (69)
169 2cr8_A MDM4 protein; ZF-ranbp 54.3 10 0.00036 27.4 3.1 26 570-595 10-35 (53)
170 1v87_A Deltex protein 2; ring- 53.5 4.6 0.00016 34.0 1.4 38 256-314 60-97 (114)
171 1ify_A HHR23A, UV excision rep 53.3 26 0.00089 25.0 5.2 37 80-117 9-45 (49)
172 2egm_A Tripartite motif-contai 53.2 4.8 0.00016 29.8 1.3 27 300-334 19-45 (57)
173 1oai_A Nuclear RNA export fact 52.1 33 0.0011 25.7 5.8 39 78-116 6-44 (59)
174 2ep4_A Ring finger protein 24; 51.9 3.1 0.00011 32.1 0.1 36 300-339 16-51 (74)
175 3hct_A TNF receptor-associated 51.2 3.9 0.00013 34.9 0.6 32 300-338 19-50 (118)
176 1vg5_A RSGI RUH-014, rhomboid 50.7 22 0.00075 27.9 4.8 35 82-117 32-66 (73)
177 1wfh_A Zinc finger (AN1-like) 50.0 8.2 0.00028 29.5 2.1 28 299-332 15-42 (64)
178 2hf1_A Tetraacyldisaccharide-1 50.0 8.5 0.00029 29.8 2.3 28 300-328 9-36 (68)
179 1rmd_A RAG1; V(D)J recombinati 49.5 4.3 0.00015 34.4 0.6 33 300-339 24-56 (116)
180 2js4_A UPF0434 protein BB2007; 49.4 9.1 0.00031 29.8 2.4 28 300-328 9-36 (70)
181 2c2l_A CHIP, carboxy terminus 48.0 12 0.00042 36.3 3.8 14 253-266 222-235 (281)
182 2pk7_A Uncharacterized protein 48.0 10 0.00035 29.5 2.5 28 300-328 9-36 (69)
183 1wfl_A Zinc finger protein 216 47.8 8.2 0.00028 30.4 1.9 27 300-332 26-52 (74)
184 1wg2_A Zinc finger (AN1-like) 47.0 9 0.00031 29.3 1.9 28 299-332 15-42 (64)
185 3h0g_I DNA-directed RNA polyme 46.0 13 0.00044 31.8 3.0 29 299-328 4-36 (113)
186 2l0b_A E3 ubiquitin-protein li 45.9 3.2 0.00011 33.7 -0.8 36 300-339 41-76 (91)
187 2dak_A Ubiquitin carboxyl-term 44.7 36 0.0012 25.6 5.1 37 82-119 12-48 (63)
188 3qt1_I DNA-directed RNA polyme 44.5 11 0.00039 33.2 2.5 30 298-328 23-56 (133)
189 2jny_A Uncharacterized BCR; st 42.5 13 0.00045 28.7 2.3 28 300-328 11-38 (67)
190 2dja_A Midline-2; tripartite m 42.4 9.4 0.00032 30.3 1.5 27 300-334 19-46 (84)
191 1veg_A NEDD8 ultimate buster-1 42.3 37 0.0012 27.3 5.0 36 83-119 33-68 (83)
192 2ecl_A Ring-box protein 2; RNF 42.1 8 0.00027 30.6 1.1 18 323-340 47-64 (81)
193 3hcs_A TNF receptor-associated 40.7 7.1 0.00024 35.5 0.6 32 300-338 19-50 (170)
194 2c6a_A Ubiquitin-protein ligas 39.0 13 0.00043 26.5 1.5 28 568-595 10-37 (46)
195 1wff_A Riken cDNA 2810002D23 p 38.8 14 0.00049 29.9 2.0 29 299-332 25-53 (85)
196 3ghg_A Fibrinogen alpha chain; 38.5 1.7E+02 0.0057 31.5 10.6 29 457-486 131-159 (562)
197 1wji_A Tudor domain containing 36.5 52 0.0018 24.8 4.8 36 81-117 11-46 (63)
198 2yw8_A RUN and FYVE domain-con 36.4 15 0.00051 29.3 1.8 41 292-335 11-52 (82)
199 1twf_I B12.6, DNA-directed RNA 36.2 14 0.00047 32.0 1.7 28 300-328 5-36 (122)
200 1wfp_A Zinc finger (AN1-like) 36.0 13 0.00043 29.3 1.2 28 299-332 25-52 (74)
201 2jy5_A Ubiquilin-1; UBA, alter 35.9 49 0.0017 23.9 4.4 37 81-118 14-51 (52)
202 1odh_A MGCM1; transcription fa 35.9 29 0.001 31.3 3.7 35 270-325 96-130 (174)
203 2knz_A Ubiquilin-4; cytoplasm, 35.7 69 0.0024 23.1 5.2 40 78-118 10-50 (53)
204 1weo_A Cellulose synthase, cat 35.5 67 0.0023 26.1 5.4 50 140-199 15-69 (93)
205 2jrp_A Putative cytoplasmic pr 35.4 13 0.00043 29.9 1.2 28 301-337 33-62 (81)
206 1x4v_A Hypothetical protein LO 33.9 17 0.00057 27.7 1.6 31 230-267 12-43 (63)
207 4a0k_B E3 ubiquitin-protein li 33.7 8.7 0.0003 33.1 0.0 25 313-339 75-99 (117)
208 2xzf_A Formamidopyrimidine-DNA 33.6 14 0.00049 36.5 1.5 25 300-325 243-269 (271)
209 3t6p_A Baculoviral IAP repeat- 33.5 17 0.00058 37.3 2.2 26 256-311 312-338 (345)
210 1ee8_A MUTM (FPG) protein; bet 33.5 16 0.00056 36.0 2.0 25 300-325 236-262 (266)
211 1f5n_A Interferon-induced guan 33.0 2.3E+02 0.008 31.0 11.4 68 455-527 513-580 (592)
212 3u6p_A Formamidopyrimidine-DNA 32.8 15 0.00051 36.4 1.5 25 300-325 246-272 (273)
213 3s84_A Apolipoprotein A-IV; fo 32.4 3.6E+02 0.012 26.3 17.5 28 457-484 154-181 (273)
214 1k82_A Formamidopyrimidine-DNA 32.1 16 0.00054 36.2 1.5 25 300-325 241-267 (268)
215 1k3x_A Endonuclease VIII; hydr 31.7 16 0.00055 35.9 1.5 25 300-325 235-261 (262)
216 1twf_L ABC10-alpha, DNA-direct 31.6 20 0.0007 27.9 1.8 25 300-326 29-53 (70)
217 1dl6_A Transcription factor II 31.2 30 0.001 25.7 2.6 26 300-326 12-38 (58)
218 1weo_A Cellulose synthase, cat 30.3 34 0.0012 27.9 2.9 53 238-316 22-75 (93)
219 3m7n_A Putative uncharacterize 30.1 24 0.00081 32.6 2.3 24 300-326 141-164 (179)
220 3t7l_A Zinc finger FYVE domain 30.0 35 0.0012 27.6 3.1 38 137-174 16-55 (90)
221 1x4w_A Hypothetical protein FL 29.8 19 0.00063 27.8 1.3 29 299-332 15-45 (67)
222 3u5c_f 40S ribosomal protein S 28.1 34 0.0012 30.7 2.9 33 230-264 118-151 (152)
223 1joc_A EEA1, early endosomal a 27.9 32 0.0011 29.8 2.6 40 293-335 62-102 (125)
224 2yu4_A E3 SUMO-protein ligase 27.1 16 0.00055 29.7 0.5 33 300-338 8-40 (94)
225 1wiv_A UBP14, ubiquitin-specif 26.8 1E+02 0.0034 24.0 5.1 29 90-118 39-67 (73)
226 2dah_A Ubiquilin-3; UBA domain 26.6 50 0.0017 24.2 3.1 37 81-118 11-48 (54)
227 1joc_A EEA1, early endosomal a 26.3 55 0.0019 28.2 3.9 36 138-173 66-103 (125)
228 2ko5_A Ring finger protein Z; 26.1 33 0.0011 28.3 2.1 48 140-202 27-75 (99)
229 2f42_A STIP1 homology and U-bo 25.9 66 0.0022 29.7 4.5 30 228-266 104-133 (179)
230 1wii_A Hypothetical UPF0222 pr 25.8 27 0.00092 28.3 1.6 28 300-328 24-57 (85)
231 3dpl_R Ring-box protein 1; ubi 25.6 16 0.00055 30.7 0.3 17 323-339 72-88 (106)
232 1z60_A TFIIH basal transcripti 25.4 20 0.00068 26.9 0.7 35 232-273 17-52 (59)
233 1wfe_A Riken cDNA 2310008M20 p 24.6 33 0.0011 27.8 1.9 32 229-267 24-56 (86)
234 3h0g_I DNA-directed RNA polyme 24.6 46 0.0016 28.2 3.0 31 229-261 3-36 (113)
235 2akl_A PHNA-like protein PA012 24.2 38 0.0013 29.5 2.3 30 297-328 25-54 (138)
236 1wr1_B Ubiquitin-like protein 24.1 1.3E+02 0.0046 22.2 5.1 41 77-118 15-56 (58)
237 2dai_A Ubadc1, ubiquitin assoc 23.9 1.2E+02 0.0039 24.3 5.0 36 82-118 32-67 (83)
238 3h0g_L DNA-directed RNA polyme 23.7 41 0.0014 25.6 2.2 27 300-328 22-48 (63)
239 2dkl_A Trinucleotide repeat co 23.5 1.3E+02 0.0045 24.1 5.4 38 80-118 22-59 (85)
240 1z2q_A LM5-1; membrane protein 23.4 66 0.0023 25.6 3.6 38 136-173 16-55 (84)
241 1y02_A CARP2, FYVE-ring finger 23.2 38 0.0013 29.2 2.1 33 300-335 20-52 (120)
242 1twf_I B12.6, DNA-directed RNA 23.2 40 0.0014 29.0 2.3 31 229-261 3-36 (122)
243 1wfk_A Zinc finger, FYVE domai 22.3 44 0.0015 27.0 2.3 33 300-335 10-42 (88)
244 2yw8_A RUN and FYVE domain-con 22.2 45 0.0015 26.4 2.3 37 137-173 15-53 (82)
245 1deq_A Fibrinogen (alpha chain 22.0 6.6E+02 0.022 25.8 12.4 24 458-482 135-158 (390)
246 4esj_A Type-2 restriction enzy 21.7 61 0.0021 31.2 3.4 36 291-328 27-66 (257)
247 1y02_A CARP2, FYVE-ring finger 21.4 37 0.0013 29.3 1.7 38 137-174 15-54 (120)
248 2xzm_9 RPS31E; ribosome, trans 21.4 39 0.0013 31.5 2.0 28 300-329 114-142 (189)
249 3lqh_A Histone-lysine N-methyl 21.1 28 0.00094 32.4 0.9 74 142-218 3-83 (183)
250 2yre_A F-box only protein 30; 21.0 21 0.0007 29.8 0.0 38 162-200 13-50 (100)
251 2kpi_A Uncharacterized protein 20.9 51 0.0017 24.3 2.2 20 300-321 11-30 (56)
252 3htk_C E3 SUMO-protein ligase 20.9 33 0.0011 33.8 1.4 32 300-337 182-213 (267)
253 1dvp_A HRS, hepatocyte growth 20.7 50 0.0017 31.3 2.7 33 300-335 162-194 (220)
254 2a20_A Regulating synaptic mem 20.7 47 0.0016 24.9 1.9 37 300-339 10-46 (62)
255 1qxf_A GR2, 30S ribosomal prot 20.4 74 0.0025 24.4 3.0 30 231-263 8-38 (66)
256 3w0f_A Endonuclease 8-like 3; 20.3 42 0.0014 33.4 2.1 29 300-334 252-281 (287)
257 2cpw_A CBL-interacting protein 20.2 1.1E+02 0.0038 23.0 4.0 35 82-117 22-57 (64)
No 1
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.80 E-value=4.1e-21 Score=149.08 Aligned_cols=57 Identities=58% Similarity=1.443 Sum_probs=53.1
Q ss_pred HHHhcCccCCCCCcceeecCCCCcccccCC--CcceeeecccccccCCCCCCCCcccCCchhh
Q 007642 294 WILANSKPCPRCKRPIEKNQGCMHMTCTPP--CKFEFCWLCLGQWSDHGERTGGFYACNRYET 354 (595)
Q Consensus 294 wi~~ntK~CPkC~~~IEK~~GCnhmtC~~~--C~~~FCw~C~~~~~~H~~~~g~~y~C~~~~~ 354 (595)
||.+++|+||+|+.+|||++|||||+|+ . |+++|||+|+++|..|+. .+|.||+|++
T Consensus 1 wi~~~~k~CP~C~~~Iek~~GCnhmtC~-~~~C~~~FCw~C~~~~~~~~~---~~y~C~~y~~ 59 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEKDGGCNHMVCR-NQNCKAEFCWVCLGPWEPHGS---AWYNCNRYNE 59 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSCCSCCSSSCC-SSGGGSCCSSSSCSCSGGGGT---SSSSSCSCCC
T ss_pred CccccceECcCCCCeeEeCCCCCcEEEC-CCCcCCEEeeCcCCCcccCCC---ccccCCCccc
Confidence 6888999999999999999999999998 7 999999999999999975 6899999963
No 2
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.58 E-value=1e-15 Score=130.49 Aligned_cols=88 Identities=20% Similarity=0.535 Sum_probs=76.2
Q ss_pred CCccccccccccccCCCceec-CCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCc--cchhHHhhhcChHHHHHH
Q 007642 139 GEEMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAA--VGQDMIYLLSSDEDKVKY 215 (595)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~--v~~~~i~~ll~~e~~eky 215 (595)
.+.++|+||++.++...++.+ +|||.||.+||+.||..+|.+|. ..+++||.++|+.. +++..++++++++++++|
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~-~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky 81 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGL-ETAISCPDAACPKQGHLQENEIECMVAAEIMQRY 81 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCS-CCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCC-cccccCccccCCCCCccCHHHHHHHCCHHHHHHH
Confidence 457899999999866566655 69999999999999999998764 24799998889999 999999999999999999
Q ss_pred HHHHHHHhhhhC
Q 007642 216 NRYFIRSYVEDN 227 (595)
Q Consensus 216 ~~~~~~~~v~~~ 227 (595)
.+++++.|++.+
T Consensus 82 ~~~~~~~~v~~~ 93 (94)
T 1wim_A 82 KKLQFERSGPSS 93 (94)
T ss_dssp HHHHHHSSCSSC
T ss_pred HHHHHHhhhccC
Confidence 999999887653
No 3
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.22 E-value=3.1e-13 Score=113.07 Aligned_cols=77 Identities=22% Similarity=0.610 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHhhhhCCCcccCCCCCCCCeeeeecCCCCceeee-cCCCcccccCCccc---CCCCCchhHHHHHHhh
Q 007642 210 EDKVKYNRYFIRSYVEDNRKTKWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNCTEEA---HRPVDCDTVAKWVLKN 285 (595)
Q Consensus 210 e~~eky~~~~~~~~v~~~~~~~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~~~---H~p~~C~~~~~~~~k~ 285 (595)
+++++|.+++++.+|..++.++||| +|+.++.... ....|+| .|++.||+.|+.+| |.|.+|..+++|+.++
T Consensus 5 ~~~e~y~~~l~e~~v~~~~~~~wCP--~C~~~~~~~~--~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w~~~n 80 (86)
T 2ct7_A 5 SSGALFHKKLTEGVLMRDPKFLWCA--QCSFGFIYER--EQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRMN 80 (86)
T ss_dssp CCCCSSSSCCCCSCCCSCCCEECCS--SSCCCEECCC--SCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCEeECc--CCCchheecC--CCCceEeCCCCCccccccCCchhhcCCCCChHHHHHHHHhC
Confidence 4567788888889999999999999 8999887653 3566999 79999999999999 9999999999999987
Q ss_pred hHhHH
Q 007642 286 SAESE 290 (595)
Q Consensus 286 ~~~~e 290 (595)
..+++
T Consensus 81 ~~~~~ 85 (86)
T 2ct7_A 81 SGPSS 85 (86)
T ss_dssp TCSSC
T ss_pred ccccc
Confidence 66553
No 4
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.14 E-value=4.3e-12 Score=114.12 Aligned_cols=117 Identities=26% Similarity=0.674 Sum_probs=79.6
Q ss_pred CCccccccccccccC-----CCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchhHHhhhcChHHHH
Q 007642 139 GEEMTCGICFENYPS-----DRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKV 213 (595)
Q Consensus 139 ~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~~ll~~e~~e 213 (595)
.+.+.|+||++.+.. ..++.++|||.||..||..|+.. ...|| .|+..+....+..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~l~~l~i----- 68 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCP--TCRKKINHKRYHPIYI----- 68 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT---------CSBCT--TTCCBCTTTCEEECBC-----
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh---------CCCCC--CCCCcCcccccccccc-----
Confidence 346889999998731 12388999999999999999864 24899 8999987654433211
Q ss_pred HHHHHHHHHhhhhCCCcccCCCCCCCCeeeeecCCCCceeeecCCCcccccCCcccCCCCCchhHHHHHHhhhHhHHhHH
Q 007642 214 KYNRYFIRSYVEDNRKTKWCPAPGCDYAVDFVVGSGNYDVTCRCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMN 293 (595)
Q Consensus 214 ky~~~~~~~~v~~~~~~~~CP~p~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~~~~H~p~~C~~~~~~~~k~~~~~e~~~ 293 (595)
+.....||- |...+..........+...||+.||..|... |+.
T Consensus 69 -------------~~~~~~C~i--C~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~------------~~~---------- 111 (133)
T 4ap4_A 69 -------------GSGTVSCPI--CMDGYSEIVQNGRLIVSTECGHVFCSQCLRD------------SLK---------- 111 (133)
T ss_dssp -------------SSSSCBCTT--TCCBHHHHHHTTCCEEEETTSBEEEHHHHHH------------HHH----------
T ss_pred -------------CCCCCCCCC--CCCccccccccCcceEeCCCCChhhHHHHHH------------HHH----------
Confidence 233457874 7654432211222335569999999998643 322
Q ss_pred HHHhcCccCCCCCcceeec
Q 007642 294 WILANSKPCPRCKRPIEKN 312 (595)
Q Consensus 294 wi~~ntK~CPkC~~~IEK~ 312 (595)
..+.||.|+..|.++
T Consensus 112 ----~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 112 ----NANTCPTCRKKINHK 126 (133)
T ss_dssp ----HCSBCTTTCCBCCGG
T ss_pred ----cCCCCCCCCCcCChh
Confidence 127999999999854
No 5
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=99.03 E-value=4.1e-12 Score=104.66 Aligned_cols=68 Identities=28% Similarity=0.616 Sum_probs=58.6
Q ss_pred hcChHHHHHHHHHHHHHhhhhCCCcccCCCCCCCCeeeeecCCCCceeee------cCCCcccccCCcccCCCCCchh
Q 007642 206 LSSDEDKVKYNRYFIRSYVEDNRKTKWCPAPGCDYAVDFVVGSGNYDVTC------RCSYSFCWNCTEEAHRPVDCDT 277 (595)
Q Consensus 206 ll~~e~~eky~~~~~~~~v~~~~~~~~CP~p~C~~~i~~~~~~~~~~v~C------~C~~~fC~~C~~~~H~p~~C~~ 277 (595)
+++++++++|++++++++|..+. ++|||+|+|+.+|.... ....|.| .|++.||+.|+.+||. .+|..
T Consensus 2 ~l~~~~~~rY~~~~~e~~v~~~~-~~~CP~p~C~~~v~~~~--~~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~ 75 (80)
T 2jmo_A 2 HMGEEQYNRYQQYGAEECVLQMG-GVLCPRPGCGAGLLPEP--DQRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSA 75 (80)
T ss_dssp CCCCCCCCSCCCSSSCCSSCCCS-SCCCCSSSCCCCCCCCS--CTTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSS
T ss_pred CCCHHHHHHHHHHHHHHHhhhCC-cEECCCCCCCcccEECC--CCCcCCCCCCCCCCCCCeeccccCccccC-Ccccc
Confidence 35567788999999999998886 99999999999997753 4566899 6999999999999999 99975
No 6
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.71 E-value=3.8e-09 Score=99.43 Aligned_cols=84 Identities=23% Similarity=0.479 Sum_probs=59.8
Q ss_pred CCCCccccccccccccCCCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchhHHhhhcChHHHHHHH
Q 007642 137 PDGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKVKYN 216 (595)
Q Consensus 137 ~~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~~ll~~e~~eky~ 216 (595)
+..+.+.|+||++.+ .+|+.++|||.||..||..++... ..+|| .|+..+....+ .....++
T Consensus 14 ~~~~~~~C~IC~~~~--~~pv~~~CgH~fC~~Ci~~~~~~~--------~~~CP--~Cr~~~~~~~~---~~~~~~~--- 75 (170)
T 3hcs_A 14 PLESKYECPICLMAL--REAVQTPCGHRFCKACIIKSIRDA--------GHKCP--VDNEILLENQL---FPDNFAK--- 75 (170)
T ss_dssp CCCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHH--------CSBCT--TTCCBCCGGGC---EECHHHH---
T ss_pred CCCCCCCCCCCChhh--cCcEECCCCCHHHHHHHHHHHHhC--------CCCCC--CCccCcchhhh---hhhHHHH---
Confidence 345689999999987 788999999999999999998653 23899 89998876432 2211111
Q ss_pred HHHHHHhhhhCCCcccCCCCCCCCeeeee
Q 007642 217 RYFIRSYVEDNRKTKWCPAPGCDYAVDFV 245 (595)
Q Consensus 217 ~~~~~~~v~~~~~~~~CP~p~C~~~i~~~ 245 (595)
..+. ...+.||+.+|+..+...
T Consensus 76 -----~~i~--~l~v~C~n~GC~~~~~~~ 97 (170)
T 3hcs_A 76 -----REIL--SLMVKCPNEGCLHKMELR 97 (170)
T ss_dssp -----HHHH--TSEEECCSTTCCCEEEGG
T ss_pred -----HHHh--hcccCCCCCCCCceecHh
Confidence 1111 235799999999877543
No 7
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=5.4e-08 Score=76.59 Aligned_cols=52 Identities=25% Similarity=0.639 Sum_probs=42.8
Q ss_pred CCCccccccccccccCCCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchh
Q 007642 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (595)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (595)
....+.|+||++.+ .+++.++|||.||..|+..|+.. + ...|| .|+..+..+
T Consensus 12 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~----~----~~~CP--~Cr~~~~~~ 63 (66)
T 2ecy_A 12 VEDKYKCEKCHLVL--CSPKQTECGHRFCESCMAALLSS----S----SPKCT--ACQESIVKD 63 (66)
T ss_dssp CCCCEECTTTCCEE--SSCCCCSSSCCCCHHHHHHHHTT----S----SCCCT--TTCCCCCTT
T ss_pred CCcCCCCCCCChHh--cCeeECCCCCHHHHHHHHHHHHh----C----cCCCC--CCCcCCChh
Confidence 34578999999987 67888999999999999999851 1 46899 899888654
No 8
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.56 E-value=5.7e-08 Score=85.41 Aligned_cols=81 Identities=21% Similarity=0.414 Sum_probs=57.9
Q ss_pred CccccccccccccCCCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchhHHhhhcChHHHHHHHHHH
Q 007642 140 EEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKVKYNRYF 219 (595)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~~ll~~e~~eky~~~~ 219 (595)
..+.|+||++.+ .+++.++|||.||..|+..|+... ...|| .|+..+....+...+ ..+ ...
T Consensus 22 ~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~--------~~~CP--~Cr~~~~~~~~~~~~-~~l----~~~- 83 (116)
T 1rmd_A 22 KSISCQICEHIL--ADPVETSCKHLFCRICILRCLKVM--------GSYCP--SCRYPCFPTDLESPV-KSF----LNI- 83 (116)
T ss_dssp HHTBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHT--------CSBCT--TTCCBCCGGGCBCCC-HHH----HHH-
T ss_pred CCCCCCCCCcHh--cCcEEcCCCCcccHHHHHHHHhHC--------cCcCC--CCCCCCCHhhccccH-HHH----HHH-
Confidence 367899999987 788889999999999999999752 24799 899998765443221 111 111
Q ss_pred HHHhhhhCCCcccCCCCCCCCeeee
Q 007642 220 IRSYVEDNRKTKWCPAPGCDYAVDF 244 (595)
Q Consensus 220 ~~~~v~~~~~~~~CP~p~C~~~i~~ 244 (595)
+. ...++||+.||+..+..
T Consensus 84 i~------~l~v~C~~~gC~~~~~~ 102 (116)
T 1rmd_A 84 LN------SLMVKCPAQDCNEEVSL 102 (116)
T ss_dssp HH------HCEEECCSTTCCCEEEH
T ss_pred HH------HhcCCCCCCCCcchhhH
Confidence 11 12468999999887654
No 9
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.56 E-value=2.5e-08 Score=81.22 Aligned_cols=57 Identities=33% Similarity=0.657 Sum_probs=45.8
Q ss_pred CCccccccccccccCCCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchh
Q 007642 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (595)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (595)
...+.|+||++.+ .+++.++|||.||..|+..|+......+. ....|| .|+..+...
T Consensus 10 ~~~~~C~IC~~~~--~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~--~~~~CP--~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELL--TEPLSLDCGHSLCRACITVSNKEAVTSMG--GKSSCP--VCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEEC--SSCCCCSSSCCCCHHHHSCCCCCCSSSCC--CCCCCS--SSCCCCCSS
T ss_pred ccCCCCcCCCccc--CCeeECCCCCHHHHHHHHHHHHhcccCCC--CCCcCC--CCCCcCCHh
Confidence 4578999999987 67888999999999999999876543322 257899 899988654
No 10
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.56 E-value=7.5e-08 Score=79.26 Aligned_cols=56 Identities=32% Similarity=0.624 Sum_probs=46.1
Q ss_pred CCccccccccccccCCCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchh
Q 007642 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (595)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (595)
...+.|+||++.+ .+++.++|||.||..|+..|+......+. ...|| .|+..+...
T Consensus 17 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~---~~~CP--~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELL--KEPVSADCNHSFCRACITLNYESNRNTDG---KGNCP--VCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCC--SSCEECTTSCCBCHHHHHHHHHHSBCTTS---CBCCT--TTCCCCCTT
T ss_pred ccCCCCcCCChhh--CcceeCCCCCHHHHHHHHHHHHhccCCCC---CCCCC--CCCCcCCHH
Confidence 4578999999987 67888999999999999999987653332 57999 899988654
No 11
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.55 E-value=4.4e-08 Score=83.03 Aligned_cols=57 Identities=19% Similarity=0.440 Sum_probs=45.3
Q ss_pred CCccccccccccccCCCceecC-CCCcccHhHHHHHHhccccCCCCccccccCCCcCCCc-cch
Q 007642 139 GEEMTCGICFENYPSDRLLAAA-CGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAA-VGQ 200 (595)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~-v~~ 200 (595)
...+.||||++.+ .+||.++ |||.||+.||..||...-..+. ...||..+|... +..
T Consensus 5 ~~~~~CPI~~~~~--~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~---~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 5 SSGFTCPITKEEM--KKPVKNKVCGHTYEEDAIVRMIESRQKRKK---KAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SSCCBCTTTCSBC--SSEEEESSSCCEEEHHHHHHHHHHHHTTTC---CBCCCSTTCCCCCBCG
T ss_pred CcEeECcCcCchh--cCCEEcCCCCCeecHHHHHHHHHHccCcCC---CCCCCcCcCcccccCH
Confidence 4578999999988 8999996 9999999999999986421111 578998889976 543
No 12
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.55 E-value=4.6e-08 Score=82.26 Aligned_cols=49 Identities=22% Similarity=0.635 Sum_probs=41.7
Q ss_pred CCccccccccccccCCCceecC-CCCcccHhHHHHHHhccccCCCCccccccCCCcCCCcc
Q 007642 139 GEEMTCGICFENYPSDRLLAAA-CGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAV 198 (595)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v 198 (595)
...+.|+||++.+ .+++.++ |||.||..||..++... + ...|| .|+..+
T Consensus 11 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~---~----~~~CP--~Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIM--TDAVVIPCCGNSYCDECIRTALLES---D----EHTCP--TCHQND 60 (92)
T ss_dssp CTTTEETTTTEEC--SSCEECTTTCCEECHHHHHHHHHHC---T----TCCCT--TTCCSS
T ss_pred CcCCCCCCCChhh--cCceECCCCCCHHHHHHHHHHHHhc---C----CCcCc--CCCCcC
Confidence 4578999999988 7899999 99999999999999742 2 36899 899886
No 13
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=3.9e-08 Score=80.96 Aligned_cols=56 Identities=34% Similarity=0.734 Sum_probs=46.3
Q ss_pred CCccccccccccccCCCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchh
Q 007642 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (595)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (595)
...+.|+||++.+ .+++.++|||.||..|+..|+..+...+. ...|| .|+..+...
T Consensus 17 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~---~~~CP--~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELL--TQPLSLDCGHSFCQACLTANHKKSMLDKG---ESSCP--VCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCC--SSCBCCSSSCCBCTTHHHHHHHHHHHTTS---CCCCT--TTCCSSCSS
T ss_pred cCCCCCCCCCccc--CCceeCCCCCHHHHHHHHHHHHHhhcCCC---CCcCC--CCCCccCHH
Confidence 4578999999987 67888999999999999999987654433 57999 899888654
No 14
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.54 E-value=1.3e-07 Score=83.52 Aligned_cols=84 Identities=23% Similarity=0.496 Sum_probs=60.2
Q ss_pred CCCCccccccccccccCCCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchhHHhhhcChHHHHHHH
Q 007642 137 PDGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKVKYN 216 (595)
Q Consensus 137 ~~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~~ll~~e~~eky~ 216 (595)
+....+.|+||++.+ .+++.++|||.||..||..|+... ...|| .|+..+....+ .....+
T Consensus 14 ~~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~--------~~~CP--~Cr~~~~~~~~---~~~~~l---- 74 (118)
T 3hct_A 14 PLESKYECPICLMAL--REAVQTPCGHRFCKACIIKSIRDA--------GHKCP--VDNEILLENQL---FPDNFA---- 74 (118)
T ss_dssp CCCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHH--------CSBCT--TTCCBCCGGGC---EECHHH----
T ss_pred CCCCCCCCCcCChhh--cCeEECCcCChhhHHHHHHHHhhC--------CCCCC--CCCCCcCHHhc---ccCHHH----
Confidence 345678999999987 678899999999999999998753 23899 89998876432 221111
Q ss_pred HHHHHHhhhhCCCcccCCCCCCCCeeeee
Q 007642 217 RYFIRSYVEDNRKTKWCPAPGCDYAVDFV 245 (595)
Q Consensus 217 ~~~~~~~v~~~~~~~~CP~p~C~~~i~~~ 245 (595)
+..+. ...+.||+.+|...+.+.
T Consensus 75 ----~~~i~--~l~v~C~n~gC~~~~~~~ 97 (118)
T 3hct_A 75 ----KREIL--SLMVKCPNEGCLHKMELR 97 (118)
T ss_dssp ----HHHHH--TSEEECSSTTCCCEEEGG
T ss_pred ----HHHHc--cceeECCCCCCCCEEeeH
Confidence 11122 235799999999887654
No 15
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.53 E-value=6.3e-08 Score=78.77 Aligned_cols=65 Identities=14% Similarity=0.226 Sum_probs=48.1
Q ss_pred CCccccccccccccCCCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchh-HHhhhcChHHHHHH
Q 007642 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD-MIYLLSSDEDKVKY 215 (595)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~-~i~~ll~~e~~eky 215 (595)
...+.|+||++.+ .+++.++|||.||..|+..|+.. + ...|| .|+..+... ++.+......++.|
T Consensus 6 ~~~~~C~IC~~~~--~~Pv~~~CgH~fc~~Ci~~~~~~----~----~~~CP--~C~~~~~~~~l~~n~~l~~~i~~~ 71 (78)
T 1t1h_A 6 PEYFRCPISLELM--KDPVIVSTGQTYERSSIQKWLDA----G----HKTCP--KSQETLLHAGLTPNYVLKSLIALW 71 (78)
T ss_dssp SSSSSCTTTSCCC--SSEEEETTTEEEEHHHHHHHHTT----T----CCBCT--TTCCBCSSCCCEECTTTHHHHHHH
T ss_pred cccCCCCCccccc--cCCEEcCCCCeecHHHHHHHHHH----C----cCCCC--CCcCCCChhhCccCHHHHHHHHHH
Confidence 4578999999987 78999999999999999999963 2 36899 899988644 23333333444433
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=8.4e-08 Score=79.69 Aligned_cols=60 Identities=27% Similarity=0.665 Sum_probs=46.7
Q ss_pred CCccccccccccccCCC--ceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchhHHhhh
Q 007642 139 GEEMTCGICFENYPSDR--LLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLL 206 (595)
Q Consensus 139 ~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~~l 206 (595)
...+.|+||++.+.... ++.++|||.||..||..|+.... ....|| .|+..+....+..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~------~~~~CP--~Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI------NGVRCP--FCSKITRITSLTQL 74 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS------SCBCCT--TTCCCBCCSSTTTS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC------CCcCCC--CCCCcccchhHHHH
Confidence 45788999999985433 88899999999999999997641 147899 89998876554443
No 17
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=6.4e-08 Score=77.56 Aligned_cols=54 Identities=31% Similarity=0.727 Sum_probs=43.6
Q ss_pred CCCccccccccccccCCCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchh
Q 007642 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (595)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (595)
....+.|+||++.+ .+++.++|||.||..|+..|+... + ....|| .|+..+...
T Consensus 17 ~~~~~~C~IC~~~~--~~~~~~~CgH~fC~~Ci~~~~~~~---~---~~~~CP--~Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDIL--QKPVTIDCGHNFCLKCITQIGETS---C---GFFKCP--LCKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBC--SSEEECTTCCEEEHHHHHHHCSSS---C---SCCCCS--SSCCCCCCC
T ss_pred CccCCEeccCCccc--CCeEEcCCCChhhHHHHHHHHHcC---C---CCCCCC--CCCCcCCcc
Confidence 34578999999987 678889999999999999998631 1 157899 899888654
No 18
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=7.9e-08 Score=76.84 Aligned_cols=55 Identities=24% Similarity=0.503 Sum_probs=45.1
Q ss_pred CCCccccccccccccCCCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchhHHhh
Q 007642 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYL 205 (595)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~~ 205 (595)
....+.|+||++.+ .+++.++|||.||..|+..|+.. ...|| .|+..+....+..
T Consensus 12 ~~~~~~C~IC~~~~--~~~~~~~CgH~fC~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 12 SLTVPECAICLQTC--VHPVSLPCKHVFCYLCVKGASWL---------GKRCA--LCRQEIPEDFLDS 66 (71)
T ss_dssp SSSCCBCSSSSSBC--SSEEEETTTEEEEHHHHHHCTTC---------SSBCS--SSCCBCCHHHHSC
T ss_pred CCCCCCCccCCccc--CCCEEccCCCHHHHHHHHHHHHC---------CCcCc--CcCchhCHhhccC
Confidence 44578999999987 77888999999999999998753 25899 8999988765543
No 19
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.47 E-value=1.6e-07 Score=81.70 Aligned_cols=69 Identities=19% Similarity=0.457 Sum_probs=50.7
Q ss_pred ccccccccccccCCCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchhHHh-hhcChHHHHHHHHHH
Q 007642 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIY-LLSSDEDKVKYNRYF 219 (595)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~-~ll~~e~~eky~~~~ 219 (595)
.+.|+||++.+ .+++.++|||.||..|+..|+... .+ ...|| .|+..+....+. ......+.+.+.+.+
T Consensus 21 ~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~--~~----~~~CP--~Cr~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (112)
T 1jm7_A 21 ILECPICLELI--KEPVSTKCDHIFCKFCMLKLLNQK--KG----PSQCP--LCKNDITKRSLQESTRFSQLVEELLKII 90 (112)
T ss_dssp HTSCSSSCCCC--SSCCBCTTSCCCCSHHHHHHHHSS--SS----SCCCT--TTSCCCCTTTCBCCCSSSHHHHHHHHHH
T ss_pred CCCCcccChhh--cCeEECCCCCHHHHHHHHHHHHhC--CC----CCCCc--CCCCcCCHhhcCccHHHHHHHHHHHHHH
Confidence 56799999987 678889999999999999999753 11 47899 899988765443 233344555555543
No 20
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=1.6e-07 Score=73.04 Aligned_cols=45 Identities=33% Similarity=0.773 Sum_probs=36.9
Q ss_pred CCCccccccccccccCCCceecCCCCcccHhHHHHHHhccccCCCCccccccC
Q 007642 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCP 190 (595)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP 190 (595)
....+.|+||++.+ .+++.++|||.||..|+..|+... +. ..+||
T Consensus 17 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~---~~---~~~CP 61 (63)
T 2ysj_A 17 LQEEVICPICLDIL--QKPVTIDCGHNFCLKCITQIGETS---CG---FFKCP 61 (63)
T ss_dssp CCCCCBCTTTCSBC--SSCEECTTSSEECHHHHHHHHHHC---SS---CCCCS
T ss_pred CccCCCCCcCCchh--CCeEEeCCCCcchHHHHHHHHHcC---CC---CCcCc
Confidence 34578999999987 678889999999999999999752 11 46898
No 21
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.46 E-value=9.7e-08 Score=81.79 Aligned_cols=52 Identities=25% Similarity=0.593 Sum_probs=43.6
Q ss_pred CccccccccccccCCCcee-cCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchhHH
Q 007642 140 EEMTCGICFENYPSDRLLA-AACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMI 203 (595)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~-l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~i 203 (595)
..+.|+||++.+ .+++. ++|||.||..||..|+... ...|| .|+..+....+
T Consensus 21 ~~~~C~IC~~~~--~~p~~~~~CgH~FC~~Ci~~~~~~~--------~~~CP--~Cr~~~~~~~l 73 (100)
T 3lrq_A 21 EVFRCFICMEKL--RDARLCPHCSKLCCFSCIRRWLTEQ--------RAQCP--HCRAPLQLREL 73 (100)
T ss_dssp HHTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHHHT--------CSBCT--TTCCBCCGGGC
T ss_pred CCCCCccCCccc--cCccccCCCCChhhHHHHHHHHHHC--------cCCCC--CCCCcCCHHHh
Confidence 367899999988 67888 9999999999999999763 25899 89999876544
No 22
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.46 E-value=2.6e-08 Score=90.94 Aligned_cols=84 Identities=26% Similarity=0.519 Sum_probs=57.1
Q ss_pred CCccccccccccccCCCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchhHH------hhhcChHHH
Q 007642 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMI------YLLSSDEDK 212 (595)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~i------~~ll~~e~~ 212 (595)
...+.|+||++.+ .+++.++|||.||..||..++.. + ...|| .|+..+..... ..++....+
T Consensus 29 ~~~~~C~IC~~~~--~~pv~~~CgH~FC~~Ci~~~~~~----~----~~~CP--~Cr~~~~~~~~~~~l~~~~~~~d~~~ 96 (141)
T 3knv_A 29 EAKYLCSACRNVL--RRPFQAQCGHRYCSFCLASILSS----G----PQNCA--ACVHEGIYEEGISILESSSAFPDNAA 96 (141)
T ss_dssp CGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHGGG----S----CEECH--HHHHTTCCCTTTTEECGGGCEECHHH
T ss_pred CcCcCCCCCChhh--cCcEECCCCCccCHHHHHHHHhc----C----CCCCC--CCCCcccccccccccchhhhcccHHH
Confidence 4578999999987 78899999999999999999853 2 35899 88875532211 122222211
Q ss_pred HHHHHHHHHHhhhhCCCcccCCCCCCCCeeee
Q 007642 213 VKYNRYFIRSYVEDNRKTKWCPAPGCDYAVDF 244 (595)
Q Consensus 213 eky~~~~~~~~v~~~~~~~~CP~p~C~~~i~~ 244 (595)
+..+. ...++||+.+|...+..
T Consensus 97 --------~~~i~--~L~v~Cpn~GC~~~~~l 118 (141)
T 3knv_A 97 --------RREVE--SLPAVCPSDGCTWKGTL 118 (141)
T ss_dssp --------HHHHH--TSEEECCSTTCCCEEEH
T ss_pred --------HHHHc--ccccccCCCCCCCEeEH
Confidence 11121 23579999999877654
No 23
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.45 E-value=1.3e-07 Score=77.35 Aligned_cols=54 Identities=24% Similarity=0.613 Sum_probs=42.2
Q ss_pred CCccccccccccccCCCceecC--CCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchhH
Q 007642 139 GEEMTCGICFENYPSDRLLAAA--CGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDM 202 (595)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~--CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~ 202 (595)
.+.++|+||++.+...++..++ |||.||..||..+|.. + ..+|| .|+..+....
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~----~----~~~CP--~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD----E----NGLCP--ACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS----S----CSBCT--TTCCBCSSCS
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc----C----CCCCC--CCCCccCCCc
Confidence 4578999999987555555555 9999999999999853 2 46899 8999886543
No 24
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=1.7e-07 Score=75.11 Aligned_cols=52 Identities=29% Similarity=0.523 Sum_probs=42.4
Q ss_pred CCccccccccccccCCCceec-CCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchhHH
Q 007642 139 GEEMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMI 203 (595)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~i 203 (595)
...+.|+||++.+ .+++.+ +|||.||..|+..|+.. ...|| .|+..+....+
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~~ 65 (72)
T 2djb_A 13 TPYILCSICKGYL--IDATTITECLHTFCKSCIVRHFYY---------SNRCP--KCNIVVHQTQP 65 (72)
T ss_dssp CGGGSCTTTSSCC--SSCEECSSSCCEECHHHHHHHHHH---------CSSCT--TTCCCCCSSCS
T ss_pred CCCCCCCCCChHH--HCcCEECCCCCHHHHHHHHHHHHc---------CCcCC--CcCcccCcccc
Confidence 4578999999987 567776 99999999999999964 25799 89998865433
No 25
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.43 E-value=8e-08 Score=84.33 Aligned_cols=51 Identities=29% Similarity=0.727 Sum_probs=42.5
Q ss_pred CCCccccccccccccCCCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccch
Q 007642 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (595)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (595)
....+.|+||++.+ .+++.++|||.||..|+..++.. + ...|| .|+..+..
T Consensus 12 ~~~~~~C~iC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~----~----~~~CP--~Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEIL--VEPVTLPCNHTLCKPCFQSTVEK----A----SLCCP--FCRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBC--SSCEECTTSCEECHHHHCCCCCT----T----TSBCT--TTCCBCHH
T ss_pred CCCCCCCccCCccc--CceeEcCCCCHHhHHHHHHHHhH----C----cCCCC--CCCcccCc
Confidence 34578999999987 68999999999999999988743 2 36899 89998864
No 26
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.42 E-value=1.1e-07 Score=84.67 Aligned_cols=49 Identities=27% Similarity=0.674 Sum_probs=41.9
Q ss_pred CccccccccccccCCCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccch
Q 007642 140 EEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (595)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (595)
..+.|+||++.+ .+++.++|||.||..|+..|+.. + ...|| .|+..+..
T Consensus 51 ~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~----~----~~~CP--~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELV--FRPITTVCQHNVCKDCLDRSFRA----Q----VFSCP--ACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBC--SSEEECTTSCEEEHHHHHHHHHT----T----CCBCT--TTCCBCCT
T ss_pred cCCCCCcCChHH--cCcEEeeCCCcccHHHHHHHHhH----C----cCCCC--CCCccCCC
Confidence 357899999988 68999999999999999999972 1 46899 89998865
No 27
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.42 E-value=1.4e-07 Score=80.52 Aligned_cols=65 Identities=29% Similarity=0.612 Sum_probs=46.9
Q ss_pred CccccccccccccCCCceec-CCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchhH-HhhhcChHHHHHHHH
Q 007642 140 EEMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDM-IYLLSSDEDKVKYNR 217 (595)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~-i~~ll~~e~~eky~~ 217 (595)
..+.|+||++.+ .+++.+ +|||.||..|+..|+.. ...|| .|+..+.... ..+....++++.|.+
T Consensus 21 ~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~l~~n~~l~~~i~~~~~ 87 (99)
T 2y43_A 21 DLLRCGICFEYF--NIAMIIPQCSHNYCSLCIRKFLSY---------KTQCP--TCCVTVTEPDLKNNRILDELVKSLNF 87 (99)
T ss_dssp HHTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHTT---------CCBCT--TTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred CCCCcccCChhh--CCcCEECCCCCHhhHHHHHHHHHC---------CCCCC--CCCCcCChhhCCcCHHHHHHHHHHHH
Confidence 357899999988 678777 89999999999999863 25899 8999887532 223333344444443
No 28
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=2.8e-07 Score=75.58 Aligned_cols=49 Identities=27% Similarity=0.628 Sum_probs=41.7
Q ss_pred CCCccccccccccccCCCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccc
Q 007642 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (595)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (595)
....+.|+||++.+ .+++.++|||.||..|+..|+.. ...|| .|+..+.
T Consensus 12 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~---------~~~CP--~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAF--QNPVVTKCRHYFCESCALEHFRA---------TPRCY--ICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBC--CSEEECTTSCEEEHHHHHHHHHH---------CSBCS--SSCCBCC
T ss_pred CCCCCCCcCCCchh--cCeeEccCCCHhHHHHHHHHHHC---------CCcCC--CcCcccc
Confidence 34578999999988 67889999999999999999864 35799 8999875
No 29
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=3e-07 Score=70.06 Aligned_cols=44 Identities=30% Similarity=0.798 Sum_probs=35.6
Q ss_pred CCccccccccccccCCCceecCCCCcccHhHHHHHHhccccCCCCccccccC
Q 007642 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCP 190 (595)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP 190 (595)
...+.|+||++.+ .+++.++|||.||..|+..|+... .+ ...||
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~--~~----~~~CP 56 (58)
T 2ecj_A 13 QVEASCSVCLEYL--KEPVIIECGHNFCKACITRWWEDL--ER----DFPCP 56 (58)
T ss_dssp CCCCBCSSSCCBC--SSCCCCSSCCCCCHHHHHHHTTSS--CC----SCCCS
T ss_pred ccCCCCccCCccc--CccEeCCCCCccCHHHHHHHHHhc--CC----CCCCC
Confidence 4578899999987 678889999999999999997641 11 46788
No 30
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.39 E-value=2.8e-07 Score=76.56 Aligned_cols=50 Identities=8% Similarity=-0.072 Sum_probs=43.1
Q ss_pred CCccccccccccccCCCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchh
Q 007642 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (595)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (595)
...+.|+||++.+ .+||.++|||.||+.||..||.. ...|| .|+..+...
T Consensus 12 p~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~~---------~~~cP--~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLM--TDPVRLPSGTVMDRSIILRHLLN---------SPTDP--FNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHH---------CSBCT--TTCCBCCGG
T ss_pred chheECcccCchh--cCCeECCCCCEECHHHHHHHHhc---------CCCCC--CCcCCCChH
Confidence 4589999999988 89999999999999999999974 24799 899888654
No 31
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.38 E-value=3.1e-07 Score=73.98 Aligned_cols=49 Identities=22% Similarity=0.635 Sum_probs=41.4
Q ss_pred CCccccccccccccCCCceecC-CCCcccHhHHHHHHhccccCCCCccccccCCCcCCCcc
Q 007642 139 GEEMTCGICFENYPSDRLLAAA-CGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAV 198 (595)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v 198 (595)
...+.|+||++.+ .+++.++ |||.||..|+..|+... + ...|| .|+..+
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~---~----~~~CP--~Cr~~~ 62 (74)
T 2yur_A 13 PDELLCLICKDIM--TDAVVIPCCGNSYCDECIRTALLES---D----EHTCP--TCHQND 62 (74)
T ss_dssp CGGGSCSSSCCCC--TTCEECSSSCCEECTTHHHHHHHHS---S----SSCCS--SSCCSS
T ss_pred CCCCCCcCCChHH--hCCeEcCCCCCHHHHHHHHHHHHhc---C----CCcCC--CCCCcC
Confidence 4578999999988 6889999 99999999999999752 2 36899 899864
No 32
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.36 E-value=9.7e-08 Score=76.01 Aligned_cols=55 Identities=25% Similarity=0.771 Sum_probs=42.5
Q ss_pred CCccccccccccccC-----CCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchhHHh
Q 007642 139 GEEMTCGICFENYPS-----DRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIY 204 (595)
Q Consensus 139 ~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~ 204 (595)
...+.|+||++.+.. ..++.++|||.||..|+..|+.. ...|| .|+..+....+.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCP--TCRKKINHKRYH 67 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH---------CSBCT--TTCCBCCCCSCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc---------CCCCC--CCCCccChhhee
Confidence 457889999998732 12378899999999999999864 24899 899988765443
No 33
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.35 E-value=1.9e-07 Score=84.79 Aligned_cols=46 Identities=30% Similarity=0.824 Sum_probs=39.5
Q ss_pred ccccccccccccCCCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccc
Q 007642 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (595)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (595)
.++|+||++.+ .+++.++|||.||..|+..|+.. ...|| .|+..+.
T Consensus 53 ~~~C~iC~~~~--~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYF--IEAVTLNCAHSFCSYCINEWMKR---------KIECP--ICRKDIK 98 (138)
T ss_dssp HSBCTTTCSBC--SSEEEETTSCEEEHHHHHHHTTT---------CSBCT--TTCCBCC
T ss_pred cCCCcccCccc--CCceECCCCCCccHHHHHHHHHc---------CCcCC--CCCCcCC
Confidence 56899999988 78999999999999999999753 24799 8998874
No 34
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.33 E-value=1.2e-07 Score=73.75 Aligned_cols=54 Identities=26% Similarity=0.776 Sum_probs=41.9
Q ss_pred CccccccccccccC-----CCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchhHHh
Q 007642 140 EEMTCGICFENYPS-----DRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIY 204 (595)
Q Consensus 140 ~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~ 204 (595)
+.+.|+||++.+.. ..++.++|||.||..|+..|+.. ...|| .|+..+....+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCP--TCRKKINHKRYH 60 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH---------CSBCT--TTCCBCTTTCEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc---------CCCCC--CCCccCCcccee
Confidence 35789999998732 22378899999999999999865 24899 899988765443
No 35
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.32 E-value=2.3e-07 Score=79.57 Aligned_cols=50 Identities=8% Similarity=-0.069 Sum_probs=43.0
Q ss_pred CCccccccccccccCCCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchh
Q 007642 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (595)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (595)
...+.||||++.+ .+||.++|||.||+.||..||.. ...|| .|+..+...
T Consensus 27 p~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~~---------~~~cP--~~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLM--TDPVRLPSGTIMDRSIILRHLLN---------SPTDP--FNRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBC--SSEEEETTTEEEEHHHHHHHTTS---------CSBCS--SSCCBCCTT
T ss_pred cHhhCCcCccCcc--cCCeECCCCCEEchHHHHHHHHc---------CCCCC--CCCCCCChh
Confidence 4589999999988 89999999999999999999963 24799 899888653
No 36
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=3e-07 Score=72.51 Aligned_cols=52 Identities=27% Similarity=0.837 Sum_probs=40.2
Q ss_pred CCCccccccccccccC-----CCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccch
Q 007642 138 DGEEMTCGICFENYPS-----DRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (595)
Q Consensus 138 ~~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (595)
....+.|+||++.+.. ..++.++|||.||..|+..|+.. ...|| .|+..|..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCP--TCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH---------CSSCT--TTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc---------CCCCC--CCCCccCc
Confidence 3457889999998742 12378899999999999999865 24799 89987753
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.31 E-value=1.5e-07 Score=73.71 Aligned_cols=54 Identities=28% Similarity=0.727 Sum_probs=40.6
Q ss_pred ccccccccc-cccCC--CceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchhHHh
Q 007642 141 EMTCGICFE-NYPSD--RLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIY 204 (595)
Q Consensus 141 ~~~C~IC~e-~~~~~--~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~ 204 (595)
.+.|+||++ .+... .++.++|||.||..|+..++.. + ..+|| .|+..+....+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~----~----~~~CP--~Cr~~~~~~~~~ 59 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR----G----AGNCP--ECGTPLRKSNFR 59 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT----T----SSSCT--TTCCCCSSCCCE
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc----C----CCcCC--CCCCccccccce
Confidence 578999999 55322 1256899999999999999863 2 36899 899988765443
No 38
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.30 E-value=5.9e-07 Score=90.60 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=43.6
Q ss_pred CCCccccccccccccCCCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchh
Q 007642 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (595)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (595)
....+.|+||++.+ .+||+++|||.||+.||..||... + ..|| .|+..+...
T Consensus 205 ~~~~~~c~i~~~~~--~dPv~~~~gh~f~~~~i~~~~~~~---~-----~~cP--~~~~~~~~~ 256 (281)
T 2c2l_A 205 IPDYLCGKISFELM--REPCITPSGITYDRKDIEEHLQRV---G-----HFNP--VTRSPLTQE 256 (281)
T ss_dssp CCSTTBCTTTCSBC--SSEEECSSCCEEETTHHHHHHHHT---C-----SSCT--TTCCCCCGG
T ss_pred CCcccCCcCcCCHh--cCCeECCCCCEECHHHHHHHHHHC---C-----CCCc--CCCCCCchh
Confidence 44689999999988 899999999999999999999751 2 2399 899988654
No 39
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.29 E-value=4.7e-07 Score=68.19 Aligned_cols=49 Identities=24% Similarity=0.656 Sum_probs=39.5
Q ss_pred CccccccccccccC--CCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccc
Q 007642 140 EEMTCGICFENYPS--DRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (595)
Q Consensus 140 ~~~~C~IC~e~~~~--~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (595)
....|+||++.+.. ..++.++|||.||..|+..|+... ..|| .|+..++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~~CP--~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG---------YRCP--LCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT---------CCCT--TSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC---------CcCC--CCCCcCC
Confidence 46789999998743 346788999999999999998763 5799 8987663
No 40
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.28 E-value=3.5e-07 Score=84.32 Aligned_cols=49 Identities=24% Similarity=0.644 Sum_probs=42.3
Q ss_pred ccccccccccccCCCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchh
Q 007642 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (595)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (595)
.+.|+||++.+ .+++.++|||.||..|+..++.. + ...|| .|+..+...
T Consensus 78 ~~~C~IC~~~~--~~pv~~~CgH~fC~~Ci~~~~~~----~----~~~CP--~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELV--YQPVTTECFHNVCKDCLQRSFKA----Q----VFSCP--ACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBC--SSEEECTTSCEEEHHHHHHHHHT----T----CCBCT--TTCCBCCTT
T ss_pred CCEeecCChhh--cCCEEcCCCCchhHHHHHHHHHh----C----CCcCC--CCCccCCCC
Confidence 57899999987 78999999999999999999974 2 46899 899988764
No 41
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.28 E-value=6.2e-07 Score=76.50 Aligned_cols=50 Identities=10% Similarity=-0.087 Sum_probs=43.1
Q ss_pred CCccccccccccccCCCceecCCC-CcccHhHHHHHHhccccCCCCccccccCCCcCCCccchh
Q 007642 139 GEEMTCGICFENYPSDRLLAAACG-HPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (595)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~Cg-H~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (595)
...+.|+||++.+ .+||.++|| |.||+.||..||.. ...|| .|+..+...
T Consensus 20 p~~~~CpI~~~~m--~dPV~~~cG~htf~r~cI~~~l~~---------~~~cP--~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLM--CDPVVLPSSRVTVDRSTIARHLLS---------DQTDP--FNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHTTT---------SCBCT--TTCSBCCTT
T ss_pred cHhcCCcCccccc--cCCeECCCCCeEECHHHHHHHHHh---------CCCCC--CCCCCCChh
Confidence 4589999999988 899999999 99999999999974 13799 899888654
No 42
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.27 E-value=3.7e-07 Score=79.15 Aligned_cols=48 Identities=27% Similarity=0.681 Sum_probs=40.5
Q ss_pred CccccccccccccCCCceec-CCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccch
Q 007642 140 EEMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (595)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (595)
..+.|+||++.+ .+++.+ +|||.||..|+..++.. ...|| .|+..+..
T Consensus 14 ~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~CP--~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYF--IDATTIIECLHSFCKTCIVRYLET---------SKYCP--ICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHTS---------CSBCT--TTCCBSCS
T ss_pred CcCCCccCChHH--hCcCEeCCCCChhhHHHHHHHHHh---------CCcCc--CCCccccc
Confidence 468899999988 678887 99999999999999864 25799 89988753
No 43
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.25 E-value=1.1e-06 Score=69.49 Aligned_cols=51 Identities=24% Similarity=0.584 Sum_probs=40.7
Q ss_pred CCccccccccccccC-CCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccch
Q 007642 139 GEEMTCGICFENYPS-DRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (595)
Q Consensus 139 ~~~~~C~IC~e~~~~-~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (595)
.....|+||++.+.. ..++.++|||.||..|+..|+... ..|| .|+..|..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~---------~~CP--~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN---------KKCP--ICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC---------SBCT--TTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC---------CCCc--CcCccccC
Confidence 446789999998754 456778999999999999998651 3599 89987754
No 44
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.18 E-value=5.2e-07 Score=79.46 Aligned_cols=45 Identities=27% Similarity=0.627 Sum_probs=39.1
Q ss_pred ccccccccccccCCCceec-CCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccch
Q 007642 141 EMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (595)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (595)
.+.|+||++.+ .+++.+ +|||.||..|+..++. ..|| .|+..+..
T Consensus 22 ~~~C~IC~~~~--~~pv~~~~CgH~fC~~Ci~~~~~-----------~~CP--~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNIL--REPVCLGGCEHIFCSNCVSDCIG-----------TGCP--VCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCC--SSCBCCCSSSCCBCTTTGGGGTT-----------TBCS--SSCCBCSC
T ss_pred CCCCCCCChHh--hCccEeCCCCCHHHHHHHHHHhc-----------CCCc--CCCCcCcc
Confidence 57899999988 788888 9999999999999874 4799 89988854
No 45
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.16 E-value=1.1e-06 Score=71.29 Aligned_cols=53 Identities=25% Similarity=0.639 Sum_probs=41.4
Q ss_pred CCccccccccccccCC-CceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchhH
Q 007642 139 GEEMTCGICFENYPSD-RLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDM 202 (595)
Q Consensus 139 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~ 202 (595)
.....|+||++.+... .++.++|||.||..|+..|+.. ...|| .|+..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~ 66 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ---------HDSCP--VCRKSLTGQN 66 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT---------TCSCT--TTCCCCCCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc---------CCcCc--CcCCccCCcc
Confidence 4567899999988543 3456799999999999999853 24799 8998886543
No 46
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.14 E-value=1.4e-06 Score=86.27 Aligned_cols=53 Identities=26% Similarity=0.544 Sum_probs=44.2
Q ss_pred CccccccccccccCCCceec-CCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchh
Q 007642 140 EEMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (595)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (595)
..+.||||++.+ .+||+. .|||.||+.||..||... + ...||..+|+..+...
T Consensus 180 ~el~CPIcl~~f--~DPVts~~CGHsFcR~cI~~~~~~~---~----~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 180 IELTCPITCKPY--EAPLISRKCNHVFDRDGIQNYLQGY---T----TRDCPQAACSQVVSMR 233 (267)
T ss_dssp CCSBCTTTSSBC--SSEEEESSSCCEEEHHHHHHHSTTC---S----CEECSGGGCSCEECGG
T ss_pred eeeECcCccCcc--cCCeeeCCCCCcccHHHHHHHHHhC---C----CCCCCcccccCcCchh
Confidence 478999999988 889875 899999999999999742 2 4789977799988653
No 47
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.13 E-value=1.4e-06 Score=73.13 Aligned_cols=51 Identities=27% Similarity=0.634 Sum_probs=40.5
Q ss_pred CCccccccccccccCCC-ceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccch
Q 007642 139 GEEMTCGICFENYPSDR-LLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (595)
Q Consensus 139 ~~~~~C~IC~e~~~~~~-~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (595)
.....|+||++.+.... ++.++|||.||..|+..|+.. ...|| .|+..+.+
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~---------~~~CP--~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK---------SGTCP--VCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT---------TCBCT--TTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc---------CCcCc--CcCccCCC
Confidence 34678999999885433 567899999999999999853 23799 89988764
No 48
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.11 E-value=6.2e-07 Score=68.24 Aligned_cols=45 Identities=24% Similarity=0.528 Sum_probs=37.3
Q ss_pred CCccccccccccccCCCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccc
Q 007642 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (595)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (595)
.+.+.|+||++.+ .+++.++|||.||..|+.. . ...|| .|+..+.
T Consensus 4 ~~~~~C~IC~~~~--~~p~~l~CgH~fC~~Ci~~--------~----~~~CP--~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEA--KCPKLLPCLHTLCSGCLEA--------S----GMQCP--ICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSC--BCCSCSTTSCCSBTTTCSS--------S----SSSCS--SCCSSSS
T ss_pred ccCCCceEeCCcc--CCeEEcCCCCcccHHHHcc--------C----CCCCC--cCCcEee
Confidence 3467899999988 6789999999999999866 1 46899 8998764
No 49
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.09 E-value=1.6e-06 Score=65.32 Aligned_cols=49 Identities=22% Similarity=0.639 Sum_probs=37.9
Q ss_pred CccccccccccccCC-CceecC-CCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccc
Q 007642 140 EEMTCGICFENYPSD-RLLAAA-CGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (595)
Q Consensus 140 ~~~~C~IC~e~~~~~-~~~~l~-CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (595)
+...|+||++.+... .++.++ |||.||..|+..|+.. ...|| .|+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---------~~~CP--~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS---------HSTCP--LCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT---------CCSCS--SSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc---------CCcCc--CCCCEeE
Confidence 356799999998543 356776 9999999999999743 24799 8987653
No 50
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=3.5e-06 Score=67.54 Aligned_cols=51 Identities=25% Similarity=0.639 Sum_probs=39.7
Q ss_pred CCccccccccccccCC-CceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccch
Q 007642 139 GEEMTCGICFENYPSD-RLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (595)
Q Consensus 139 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (595)
.....|+||++.+... ..+.++|||.||..|+..|+... ..|| .|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~---------~~CP--~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR---------KVCP--LCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC---------SBCT--TTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC---------CcCC--CcCccccc
Confidence 4467899999998543 34556999999999999998652 3799 89987743
No 51
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.06 E-value=2.2e-06 Score=67.53 Aligned_cols=47 Identities=34% Similarity=0.729 Sum_probs=38.2
Q ss_pred CccccccccccccCCC-ceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccc
Q 007642 140 EEMTCGICFENYPSDR-LLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (595)
Q Consensus 140 ~~~~C~IC~e~~~~~~-~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (595)
....|+||++.+ .+ ++.++|||.||..|+..|+.. ...|| .|+..+.
T Consensus 4 ~~~~C~IC~~~~--~~~~~~~~C~H~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDP--SNYSMALPCLHAFCYVCITRWIRQ---------NPTCP--LCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCC--CSCEEETTTTEEESTTHHHHHHHH---------SCSTT--TTCCCCC
T ss_pred CCCCCeeCCccc--cCCcEecCCCCeeHHHHHHHHHhC---------cCcCc--CCChhhH
Confidence 356799999987 44 478899999999999999854 24799 8998775
No 52
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.01 E-value=2.3e-06 Score=68.86 Aligned_cols=51 Identities=27% Similarity=0.711 Sum_probs=40.3
Q ss_pred CCccccccccccccCCC-ceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccch
Q 007642 139 GEEMTCGICFENYPSDR-LLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (595)
Q Consensus 139 ~~~~~C~IC~e~~~~~~-~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (595)
.....|+||++.+.... ++.++|||.||..|+..|+... ..|| .|+..+.+
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~---------~~CP--~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN---------RTCP--ICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC---------SSCT--TTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC---------CcCc--CcCCcCCC
Confidence 34678999999985433 4678999999999999998642 3799 89988754
No 53
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.99 E-value=2.8e-06 Score=80.15 Aligned_cols=51 Identities=16% Similarity=0.134 Sum_probs=43.4
Q ss_pred CCccccccccccccCCCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchh
Q 007642 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (595)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (595)
...+.||||++.+ .+||.++|||.||+.||..||... | . .|| .|+..+...
T Consensus 104 p~~f~CPI~~elm--~DPV~~~~Ghtfer~~I~~~l~~~---~----~-tcP--~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELM--REPCITPSGITYDRKDIEEHLQRV---G----H-FDP--VTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHT---C----S-BCT--TTCCBCCGG
T ss_pred cHhhcccCccccC--CCCeECCCCCEECHHHHHHHHHhC---C----C-CCC--CCcCCCChh
Confidence 4689999999987 899999999999999999999752 2 2 699 899888654
No 54
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.97 E-value=4.8e-06 Score=72.62 Aligned_cols=54 Identities=31% Similarity=0.627 Sum_probs=39.3
Q ss_pred ccccccccccccCC----------------CceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccch
Q 007642 141 EMTCGICFENYPSD----------------RLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (595)
Q Consensus 141 ~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (595)
...|+||++.+... ....++|||.||..||..|+....... ...|| .|+..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~----~~~CP--~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDG----SLQCP--SCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSS----CCBCT--TTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCC----CCcCC--CCCCccCC
Confidence 45899999997431 112678999999999999985432121 46899 89988753
No 55
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=1.5e-06 Score=68.88 Aligned_cols=48 Identities=27% Similarity=0.725 Sum_probs=38.4
Q ss_pred CCccccccccccccCCCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccch
Q 007642 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (595)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (595)
.....|+||++.+. + +.++|||.||..|+..|+.. ...|| .|+..+..
T Consensus 13 ~~~~~C~IC~~~~~--~-~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRA--D-LILPCAHSFCQKCIDKWSDR---------HRNCP--ICRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCC--S-EEETTTEEECHHHHHHSSCC---------CSSCH--HHHHCTTC
T ss_pred CCCCCCeeCCcCcc--C-cccCCCCcccHHHHHHHHHC---------cCcCC--CcCCcccC
Confidence 45678999999874 3 88999999999999998752 35799 78876653
No 56
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.92 E-value=4.6e-06 Score=77.81 Aligned_cols=48 Identities=27% Similarity=0.771 Sum_probs=40.0
Q ss_pred CccccccccccccCCCceec-CCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccc
Q 007642 140 EEMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (595)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (595)
..+.|+||++.+ .+++.+ +|||.||..|+..|+.. + ...|| .|+..+.
T Consensus 53 ~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~----~----~~~CP--~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDML--KNTMTTKECLHRFCADCIITALRS----G----NKECP--TCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHHT----T----CCBCT--TTCCBCC
T ss_pred CCCCCcccChHh--hCcCEeCCCCChhHHHHHHHHHHh----C----cCCCC--CCCCcCC
Confidence 467999999988 567776 99999999999999873 2 35799 8998874
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.76 E-value=9.2e-06 Score=65.36 Aligned_cols=43 Identities=28% Similarity=0.705 Sum_probs=36.4
Q ss_pred ccccccccccccCCCceecCCCCc-ccHhHHHHHHhccccCCCCccccccCCCcCCCccch
Q 007642 141 EMTCGICFENYPSDRLLAAACGHP-FCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (595)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (595)
...|+||++.+ .+++.++|||. ||..|+..+ ..|| .|+..+..
T Consensus 24 ~~~C~iC~~~~--~~~~~~pCgH~~~C~~C~~~~-------------~~CP--~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRN--IAIVFVPCGHLVTCKQCAEAV-------------DKCP--MCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSB--CCEEEETTCCBCCCHHHHTTC-------------SBCT--TTCCBCSE
T ss_pred CCCCCCCCCCC--CCEEEcCCCChhHHHHhhhcC-------------ccCC--CcCcCccC
Confidence 56799999986 78899999999 999998764 4799 89988753
No 58
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.68 E-value=2e-05 Score=63.55 Aligned_cols=43 Identities=28% Similarity=0.726 Sum_probs=35.7
Q ss_pred ccccccccccccCCCceecCCCCc-ccHhHHHHHHhccccCCCCccccccCCCcCCCccch
Q 007642 141 EMTCGICFENYPSDRLLAAACGHP-FCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (595)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (595)
...|+||++.+ .+++.++|||. ||..|+.. ...|| .|+..+..
T Consensus 25 ~~~C~IC~~~~--~~~~~~pCgH~~~C~~C~~~-------------~~~CP--~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRN--IAIVFVPCGHLVTCKQCAEA-------------VDKCP--MCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSC--CCBCCSSSCCCCBCHHHHHH-------------CSBCT--TTCCBCCC
T ss_pred CCCCCcCCCCC--CCEEEecCCCHHHHHHHhhC-------------CCCCc--cCCceecC
Confidence 46799999986 78899999999 99999953 24799 89988754
No 59
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=2.8e-05 Score=63.65 Aligned_cols=51 Identities=27% Similarity=0.554 Sum_probs=36.7
Q ss_pred CccccccccccccC------------CCceec-CCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchh
Q 007642 140 EEMTCGICFENYPS------------DRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (595)
Q Consensus 140 ~~~~C~IC~e~~~~------------~~~~~l-~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (595)
...+|+||++.+.. ..++.+ +|||.||..|+..|+... -.|| .|+..+...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~---------~~CP--~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN---------NRCP--LCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC---------CBCT--TTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC---------CCCC--CcCCCcchh
Confidence 45568888877632 224455 599999999999998642 3799 899887543
No 60
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=97.65 E-value=1.8e-05 Score=52.54 Aligned_cols=27 Identities=37% Similarity=0.952 Sum_probs=24.5
Q ss_pred CCccccCCCCcccCCcccccccccCCC
Q 007642 569 SSHWYCDQCTYANVNSATACAMCQHSR 595 (595)
Q Consensus 569 ~~~~~~~~c~~~~~~~~~~c~~c~~~~ 595 (595)
++.|.|.+|||.|......|.||..+|
T Consensus 4 ~~~W~C~~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 4 SAMWACQHCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp SCCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred CccccCCcccccCCCCCCccCCcCCCC
Confidence 356999999999999999999998775
No 61
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.59 E-value=1.9e-05 Score=70.28 Aligned_cols=56 Identities=25% Similarity=0.758 Sum_probs=43.5
Q ss_pred CCCccccccccccccC-----CCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchhHHh
Q 007642 138 DGEEMTCGICFENYPS-----DRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIY 204 (595)
Q Consensus 138 ~~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~ 204 (595)
+.....|+||++.+.. ..++.++|||.||..|+..|+.. ...|| .|+..+....+.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~~~ 129 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCP--TCRKKINHKRYH 129 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH---------CSBCT--TTCCBCCGGGEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc---------CCCCC--CCCCcCChhcce
Confidence 4557889999998732 12378899999999999999864 24899 899998776543
No 62
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.55 E-value=3.6e-05 Score=60.08 Aligned_cols=49 Identities=20% Similarity=0.349 Sum_probs=38.4
Q ss_pred CCCccccccccccccCCCceec--CCCCc-ccHhHHHHHHhccccCCCCccccccCCCcCCCccc
Q 007642 138 DGEEMTCGICFENYPSDRLLAA--ACGHP-FCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (595)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l--~CgH~-fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (595)
......|.||++.. .+++.+ +|||. ||..|+..++.. .-+|| .|+..+.
T Consensus 5 ~~~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~~---------~~~CP--iCR~~i~ 56 (64)
T 2vje_A 5 LNAIEPCVICQGRP--KNGCIVHGKTGHLMACFTCAKKLKKR---------NKPCP--VCRQPIQ 56 (64)
T ss_dssp CGGGSCCTTTSSSC--SCEEEEETTEEEEEECHHHHHHHHHT---------TCCCT--TTCCCCC
T ss_pred CCCcCCCCcCCCCC--CCEEEECCCCCChhhHHHHHHHHHHc---------CCcCC--CcCcchh
Confidence 34567899999976 566665 99999 899999998753 23799 8998774
No 63
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=97.45 E-value=4.5e-05 Score=51.73 Aligned_cols=26 Identities=31% Similarity=0.915 Sum_probs=24.1
Q ss_pred CccccCCCCcccCCcccccccccCCC
Q 007642 570 SHWYCDQCTYANVNSATACAMCQHSR 595 (595)
Q Consensus 570 ~~~~~~~c~~~~~~~~~~c~~c~~~~ 595 (595)
..|.|.+|||.|......|.||..+|
T Consensus 7 ~~W~C~~CT~~N~~~~~~Ce~C~~~r 32 (34)
T 3a9j_C 7 AQWNCTACTFLNHPALIRCEQCEMPR 32 (34)
T ss_dssp CCEECTTTCCEECTTCSBCTTTCCBS
T ss_pred CcCCCCCCccccCCCCCeeCCCCCcC
Confidence 56999999999999999999998775
No 64
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.44 E-value=6.1e-05 Score=58.55 Aligned_cols=47 Identities=19% Similarity=0.352 Sum_probs=36.8
Q ss_pred CccccccccccccCCCceec--CCCCc-ccHhHHHHHHhccccCCCCccccccCCCcCCCccc
Q 007642 140 EEMTCGICFENYPSDRLLAA--ACGHP-FCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (595)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l--~CgH~-fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (595)
....|.||++.. .+++.+ +|||. ||..|...++.. .-+|| .|+..+.
T Consensus 6 ~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~~---------~~~CP--iCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRP--RDGNIIHGRTGHLVTCFHCARRLKKA---------GASCP--ICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSB--SCEEEEETTEEEEEECHHHHHHHHHT---------TCBCT--TTCCBCC
T ss_pred cCCCCcccCCcC--CCeEEEecCCCCHhHHHHHHHHHHHh---------CCcCC--CcCchhh
Confidence 456899999875 455555 99998 999999988753 13799 8998874
No 65
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=97.42 E-value=9.4e-05 Score=54.94 Aligned_cols=26 Identities=35% Similarity=0.925 Sum_probs=23.7
Q ss_pred CccccCCCCcccCCcccccccccCCC
Q 007642 570 SHWYCDQCTYANVNSATACAMCQHSR 595 (595)
Q Consensus 570 ~~~~~~~c~~~~~~~~~~c~~c~~~~ 595 (595)
..|.|.+|||.|......|.||..+|
T Consensus 9 ~~W~Cp~CTf~N~p~~~~CemC~~pr 34 (52)
T 2crc_A 9 VGWQCPGCTFINKPTRPGCEMCCRAR 34 (52)
T ss_dssp SSBCCTTTCCCBCTTCSSCSSSCCCC
T ss_pred CCccCCCcccccCCCCCeeCCCCCcC
Confidence 46999999999999999999997665
No 66
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.41 E-value=7.9e-05 Score=55.72 Aligned_cols=28 Identities=36% Similarity=0.880 Sum_probs=24.7
Q ss_pred CCCccccCCCCcccCCcccccccccCCC
Q 007642 568 DSSHWYCDQCTYANVNSATACAMCQHSR 595 (595)
Q Consensus 568 ~~~~~~~~~c~~~~~~~~~~c~~c~~~~ 595 (595)
..+.|.|..|||.|......|.||..+|
T Consensus 8 ~~~~W~C~~CT~~N~~~~~~C~~C~~pr 35 (53)
T 2d9g_A 8 DEGYWDCSVCTFRNSAEAFKCMMCDVRK 35 (53)
T ss_dssp CCCCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred CCCCcCCCCCccCCCCCCCccCCCCCcC
Confidence 3457999999999999999999998765
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.41 E-value=4.6e-05 Score=62.10 Aligned_cols=43 Identities=33% Similarity=0.729 Sum_probs=35.8
Q ss_pred ccccccccccccCCCceecCCCCc-ccHhHHHHHHhccccCCCCccccccCCCcCCCccch
Q 007642 141 EMTCGICFENYPSDRLLAAACGHP-FCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (595)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (595)
...|+||++.. .+++.++|||. ||..|+..+ ..|| .|+..+..
T Consensus 18 ~~~C~IC~~~~--~~~v~~pCgH~~~C~~C~~~~-------------~~CP--~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEE--INSTFCPCGHTVCCESCAAQL-------------QSCP--VCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSB--CCEEEETTCBCCBCHHHHTTC-------------SBCT--TTCCBCCE
T ss_pred CCEeEEeCccc--CcEEEECCCCHHHHHHHHHhc-------------CcCC--CCCchhhC
Confidence 45799999976 78899999999 999999754 2799 89988754
No 68
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.40 E-value=8.6e-05 Score=78.03 Aligned_cols=49 Identities=31% Similarity=0.674 Sum_probs=40.6
Q ss_pred ccccccccccccCCCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchh
Q 007642 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (595)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (595)
...|+||++.+ .+++.++|||.||..|+..++.. + ...|| .|+..+...
T Consensus 332 ~~~C~ICle~~--~~pv~lpCGH~FC~~Ci~~wl~~----~----~~~CP--~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAEND--KDVKIEPCGHLMCTSCLTSWQES----E----GQGCP--FCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSB--CCEEEETTCCEECHHHHHHHHHH----T----CSBCT--TTCCBCCEE
T ss_pred CCCCCccCcCC--CCeEEeCCCChhhHHHHHHHHhc----C----CCCCC--CCCCccCCc
Confidence 36899999987 77899999999999999998763 1 35899 899887653
No 69
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.39 E-value=0.00015 Score=57.23 Aligned_cols=45 Identities=22% Similarity=0.609 Sum_probs=36.9
Q ss_pred CCccccccccccccCCCceecCCCCc-ccHhHHHHHHhccccCCCCccccccCCCcCCCccch
Q 007642 139 GEEMTCGICFENYPSDRLLAAACGHP-FCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (595)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (595)
.....|.||++.. .+++.+||||. ||..|... ...|| .|+..|..
T Consensus 13 ~~~~~C~IC~~~~--~~~v~~pCgH~~~C~~C~~~-------------~~~CP--~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGT--VNWVLLPCRHTCLCDGCVKY-------------FQQCP--MCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSC--CCCEETTTTBCCSCTTHHHH-------------CSSCT--TTCCCCCC
T ss_pred CCCCCCCCcCcCC--CCEEEECCCChhhhHHHHhc-------------CCCCC--CCCcchhc
Confidence 4467899999976 67899999999 99999983 14799 89987754
No 70
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.30 E-value=0.00017 Score=62.24 Aligned_cols=49 Identities=20% Similarity=0.385 Sum_probs=37.6
Q ss_pred CccccccccccccCC----------------CceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccc
Q 007642 140 EEMTCGICFENYPSD----------------RLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (595)
Q Consensus 140 ~~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (595)
....|+||++.+... .++.++|+|.|+..|+..|+.. ...|| .|+..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---------~~~CP--~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---------RQVCP--LDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT---------CSBCS--SSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc---------CCcCc--CCCCcce
Confidence 456799999887532 1355789999999999999864 24799 8998764
No 71
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=97.19 E-value=0.00014 Score=60.34 Aligned_cols=48 Identities=25% Similarity=0.672 Sum_probs=39.3
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccc-cCCCCCCCCcccCCchh
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQW-SDHGERTGGFYACNRYE 353 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~-~~H~~~~g~~y~C~~~~ 353 (595)
+-||.|..++....+-..++|. .|++.||+.|..+| ..|.. ..|..|+
T Consensus 26 ~wCP~C~~~~~~~~~~~~v~C~-~C~~~FC~~C~~~w~~~H~~-----~sC~~~~ 74 (86)
T 2ct7_A 26 LWCAQCSFGFIYEREQLEATCP-QCHQTFCVRCKRQWEEQHRG-----RSCEDFQ 74 (86)
T ss_dssp ECCSSSCCCEECCCSCSCEECT-TTCCEECSSSCSBCCTTTTT-----SCHHHHH
T ss_pred eECcCCCchheecCCCCceEeC-CCCCccccccCCchhhcCCC-----CChHHHH
Confidence 5699999999888888889998 79999999999999 45543 3576554
No 72
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.19 E-value=0.00042 Score=56.54 Aligned_cols=53 Identities=19% Similarity=0.394 Sum_probs=42.6
Q ss_pred CCccccccccccccCCCceecCCC-----CcccHhHHHHHHhccccCCCCccccccCCCcCCCccch
Q 007642 139 GEEMTCGICFENYPSDRLLAAACG-----HPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (595)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~Cg-----H~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (595)
.....|.||++.+...+++.++|+ |.|+..|+..|+... + ...|| .|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~---~----~~~Cp--lCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS---D----TRCCE--LCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH---C----CSBCS--SSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC---C----CCCCC--CCCCeeec
Confidence 346689999998876666778996 999999999999763 2 36899 89988754
No 73
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.83 E-value=0.00029 Score=73.41 Aligned_cols=43 Identities=28% Similarity=0.780 Sum_probs=36.6
Q ss_pred ccccccccccccCCCceecCCCCc-ccHhHHHHHHhccccCCCCccccccCCCcCCCccch
Q 007642 141 EMTCGICFENYPSDRLLAAACGHP-FCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (595)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (595)
...|+||++.+ .+++.++|||. ||..|+..+ ..|| .|+..+..
T Consensus 295 ~~~C~IC~~~~--~~~v~lpCgH~~fC~~C~~~~-------------~~CP--~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKE--VSVVFIPCGHLVVCQECAPSL-------------RKCP--ICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSB--CCEEEETTCCEEECTTTGGGC-------------SBCT--TTCCBCCE
T ss_pred CCCCCccCCcC--CceEEcCCCChhHhHHHHhcC-------------CcCC--CCCCCccC
Confidence 57899999987 78999999999 999998754 4799 89988753
No 74
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=96.62 E-value=0.00097 Score=54.36 Aligned_cols=40 Identities=28% Similarity=0.699 Sum_probs=34.7
Q ss_pred CccCCC--CCcceeecCCCCcccccC----CCcceeeecccccccC
Q 007642 299 SKPCPR--CKRPIEKNQGCMHMTCTP----PCKFEFCWLCLGQWSD 338 (595)
Q Consensus 299 tK~CPk--C~~~IEK~~GCnhmtC~~----~C~~~FCw~C~~~~~~ 338 (595)
.+-||. |+..|....+...++|.. .|++.||+.|+.+|+.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 377987 999999888999999941 4999999999999965
No 75
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.53 E-value=0.00046 Score=60.45 Aligned_cols=48 Identities=21% Similarity=0.406 Sum_probs=0.4
Q ss_pred ccccccccccccCC----------------CceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccc
Q 007642 141 EMTCGICFENYPSD----------------RLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (595)
Q Consensus 141 ~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (595)
.-.|+||++.+... .++.++|+|.|+..|+..|+.. ...|| .|+..+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~---------~~~CP--~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---------RQVCP--LDNREWE 111 (117)
T ss_dssp C--------------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc---------CCcCC--CCCCeee
Confidence 45799999987431 1233589999999999999865 24799 8987653
No 76
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.46 E-value=0.0017 Score=50.07 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=38.4
Q ss_pred ccccccccccccCCCceec-CCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchh
Q 007642 141 EMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (595)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (595)
.+.|+|+++.+ .+++.+ ++||.|++.||..|+... + .|| ..+..+...
T Consensus 3 ~~~CpIs~~~m--~dPV~~~~sG~~yer~~I~~~l~~~---~------~cP--~t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVP--RRPVLSPKSRTIFEKSLLEQYVKDT---G------NDP--ITNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCC--SSEEEETTTTEEEEHHHHHHHHHHH---S------BCT--TTCCBCCGG
T ss_pred eEEecCCCCCC--CCCEEeCCCCcEEcHHHHHHHHHhC---C------CCc--CCcCCCChh
Confidence 47899999987 789988 899999999999999752 2 388 677766544
No 77
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=96.14 E-value=0.002 Score=43.11 Aligned_cols=27 Identities=33% Similarity=0.853 Sum_probs=23.6
Q ss_pred CCccccCCCCcccCCcccccccccCCC
Q 007642 569 SSHWYCDQCTYANVNSATACAMCQHSR 595 (595)
Q Consensus 569 ~~~~~~~~c~~~~~~~~~~c~~c~~~~ 595 (595)
.+.|.|+.||+.|..++..|.+|.-+|
T Consensus 5 ~g~W~C~~C~~~N~~~~~kC~aC~tpk 31 (33)
T 3gj3_B 5 SGTWDCDTCLVQNKPEAVKCVACETPK 31 (33)
T ss_dssp -CCEECTTTCCEECTTCSBCTTTCCBC
T ss_pred CCceeCCcccCCCccccCEEcccCCCC
Confidence 366999999999999999999997654
No 78
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=95.89 E-value=0.0031 Score=48.68 Aligned_cols=26 Identities=35% Similarity=0.925 Sum_probs=23.3
Q ss_pred CccccCCCCcccCCcccccccccCCC
Q 007642 570 SHWYCDQCTYANVNSATACAMCQHSR 595 (595)
Q Consensus 570 ~~~~~~~c~~~~~~~~~~c~~c~~~~ 595 (595)
..|.|.+|||.|......|.||.-+|
T Consensus 7 ~~W~CP~CTf~N~p~~p~CEmC~~pr 32 (64)
T 3b08_B 7 VGWQCPGCTFINKPTRPGCEMCCRAR 32 (64)
T ss_dssp CSEECTTTCCEECTTCSBCTTTCCBC
T ss_pred CCCcCCCccccCCCCCCccCcCCCCC
Confidence 45999999999999999999997654
No 79
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.54 E-value=0.0091 Score=47.77 Aligned_cols=50 Identities=22% Similarity=0.499 Sum_probs=37.5
Q ss_pred CccccccccccccCCCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccc
Q 007642 140 EEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (595)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (595)
....|.||++.+.... .-..|+|.|...|+..||.+.- .-.|| .|+..+.
T Consensus 14 ~i~~C~IC~~~i~~g~-~C~~C~h~fH~~Ci~kWl~~~~-------~~~CP--~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQ-SCETCGIRMHLPCVAKYFQSNA-------EPRCP--HCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSE-ECSSSCCEECHHHHHHHSTTCS-------SCCCT--TTCSCCC
T ss_pred CCCcCcchhhHcccCC-ccCCCCchhhHHHHHHHHHhcC-------CCCCC--CCcCcCC
Confidence 3567999999885432 2238999999999999997531 24799 8988764
No 80
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=94.43 E-value=0.047 Score=56.00 Aligned_cols=112 Identities=18% Similarity=0.340 Sum_probs=65.2
Q ss_pred ceEEeCHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHHhhhcHHHHHHHhCCCCCCCC---CC-----C
Q 007642 66 NYTVLTEADIRQRQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADEERVRKAVGLLEKPAV---QF-----P 137 (595)
Q Consensus 66 ~y~vl~~~~i~~~~~~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~~~~~~~~~~gl~~~~~~---~~-----~ 137 (595)
...+|-++.....+++....= .-+|+.++-+- +.+..-.++..-|.. .. .
T Consensus 247 e~~FlGpd~~V~~Lr~~l~~N----------------l~~Wd~d~si~------eNL~~IL~i~~fP~p~~~~~~~~~e~ 304 (381)
T 3k1l_B 247 SLKIIGPTEEVARLRHVLSDG----------------LSNWDSEMNIH------KNLLRMFDLCYFPMPDWSDGPKLDEE 304 (381)
T ss_dssp EEEEESSHHHHHHHHHHHHHH----------------HHTCCTTSCHH------HHHHHHTTCSSCCCCCGGGCCSCTTC
T ss_pred eeEEECChhHhHHHHHHHhhh----------------hhhcCccCCHH------HHHHHHhCccccCCCccccccccccc
Confidence 355677777666555543332 24788765332 234444555222211 10 1
Q ss_pred CCCccccccccccccC-CCce-----ecCCCCcccHhHHHHHHhccccCCC--CccccccCCCcCCCccchh
Q 007642 138 DGEEMTCGICFENYPS-DRLL-----AAACGHPFCSSCWTGYISTAINDGP--GCLMLRCPDPSCGAAVGQD 201 (595)
Q Consensus 138 ~~~~~~C~IC~e~~~~-~~~~-----~l~CgH~fC~~C~~~yi~~~i~~g~--~~~~i~CP~~~C~~~v~~~ 201 (595)
......|+||++.+.. ..+. ...|||.|...|+..|+.+.-.... ....=.|| -|+..++-.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CP--yCr~pIs~s 374 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCP--FCKAKLSTS 374 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECT--TTCCEEEGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCC--CCCCcCCcc
Confidence 2346789999998754 2221 3479999999999999986432211 11223799 899988644
No 81
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=93.99 E-value=0.086 Score=37.68 Aligned_cols=41 Identities=12% Similarity=0.319 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHHhhhcH
Q 007642 79 QEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADE 119 (595)
Q Consensus 79 ~~~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 119 (595)
+.+.|.+...|.++++..|..+|...+||.+..+..||.++
T Consensus 5 ~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~~ 45 (46)
T 1v92_A 5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDG 45 (46)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 55679999999999999999999999999999999998753
No 82
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=93.83 E-value=0.025 Score=37.99 Aligned_cols=26 Identities=31% Similarity=0.833 Sum_probs=23.1
Q ss_pred CCccccCCCCcccCCcccccccccCC
Q 007642 569 SSHWYCDQCTYANVNSATACAMCQHS 594 (595)
Q Consensus 569 ~~~~~~~~c~~~~~~~~~~c~~c~~~ 594 (595)
.+.|-|+-|.+.|..++..|.+|..+
T Consensus 5 ~G~W~C~~C~v~N~~~~~kC~aCet~ 30 (34)
T 3gj5_B 5 SGSWDCEVCLVQNKADSTKCIACESA 30 (34)
T ss_dssp -CCEECTTTCCEECSSCSBCTTTCCB
T ss_pred CCceECCeeEeECccccCEEcccCCc
Confidence 36699999999999999999999765
No 83
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.00 E-value=0.043 Score=41.92 Aligned_cols=37 Identities=32% Similarity=0.848 Sum_probs=30.1
Q ss_pred CcccCCCCCCCCeeeeecCCCCceeee-c--CCCcccccCCccc
Q 007642 229 KTKWCPAPGCDYAVDFVVGSGNYDVTC-R--CSYSFCWNCTEEA 269 (595)
Q Consensus 229 ~~~~CP~p~C~~~i~~~~~~~~~~v~C-~--C~~~fC~~C~~~~ 269 (595)
+.+.|| .|...|+.. .+-..++| . |++.||+.|+.+|
T Consensus 5 ~~k~CP--~C~~~Iek~--~GCnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 5 NTKECP--KCHVTIEKD--GGCNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCCCT--TTCCCCSSC--CSCCSSSCCSSGGGSCCSSSSCSCS
T ss_pred cceECc--CCCCeeEeC--CCCCcEEECCCCcCCEEeeCcCCCc
Confidence 457898 599988774 35678899 5 9999999999875
No 84
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.98 E-value=0.069 Score=38.54 Aligned_cols=25 Identities=32% Similarity=0.848 Sum_probs=22.9
Q ss_pred CccccCCCCcccCCcccccccccCC
Q 007642 570 SHWYCDQCTYANVNSATACAMCQHS 594 (595)
Q Consensus 570 ~~~~~~~c~~~~~~~~~~c~~c~~~ 594 (595)
+.|.|+-|.+.|..+...|.+|.-+
T Consensus 10 g~W~C~~C~v~N~a~~~kC~aCetp 34 (47)
T 2ebq_A 10 GTWDCDTCLVQNKPEAIKCVACETP 34 (47)
T ss_dssp SSEECSSSCCEECSSCSBCSSSCCB
T ss_pred CceECCeeeccCccCCceecCcCCC
Confidence 5699999999999999999999654
No 85
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=92.74 E-value=0.067 Score=44.87 Aligned_cols=46 Identities=24% Similarity=0.389 Sum_probs=31.4
Q ss_pred ccccccccccCCCceecCCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccc
Q 007642 143 TCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (595)
Q Consensus 143 ~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (595)
-|++|--.+. .-...+||.|.||.+|...+.... .-.|| .|+..|.
T Consensus 3 fC~~C~~Pi~-iygRmIPCkHvFCydCa~~~~~~~--------~k~Cp--~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIK-VYGRMIPCKHVFCYDCAILHEKKG--------DKMCP--GCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCS-EEEEEETTCCEEEHHHHHHHHHTT--------CCBCT--TTCCBCS
T ss_pred ecCccCCCeE-EEeeeccccccHHHHHHHHHHhcc--------CCCCc--CcCCeee
Confidence 3777754331 234568999999999999987542 12577 7877664
No 86
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.53 E-value=0.2 Score=38.37 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHHhhhcH
Q 007642 78 RQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADE 119 (595)
Q Consensus 78 ~~~~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 119 (595)
.+++.|.+...|.+.++..|+.+|...+||.+..+..||.++
T Consensus 14 ~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~ 55 (62)
T 2dal_A 14 ALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGG 55 (62)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 456779999999999999999999999999999999998764
No 87
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.47 E-value=0.06 Score=45.24 Aligned_cols=34 Identities=18% Similarity=0.588 Sum_probs=26.2
Q ss_pred CccccccccccccCCCcee--cCCCCcccHhHHHHHH
Q 007642 140 EEMTCGICFENYPSDRLLA--AACGHPFCSSCWTGYI 174 (595)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~--l~CgH~fC~~C~~~yi 174 (595)
+.+.|+||.+.+. .+++. +.|+|+||..|+..+.
T Consensus 2 ee~~C~~C~~~~~-~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPA-QDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSC-CBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCC-CCceEECCcCChHHhHHHCHHHh
Confidence 3578999997532 34555 8999999999999843
No 88
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=91.46 E-value=0.32 Score=38.77 Aligned_cols=52 Identities=23% Similarity=0.566 Sum_probs=40.0
Q ss_pred CCCCCccccccccccccCCCceecC--CCCcccHhHHHHHHhccccCCCCccccccCC
Q 007642 136 FPDGEEMTCGICFENYPSDRLLAAA--CGHPFCSSCWTGYISTAINDGPGCLMLRCPD 191 (595)
Q Consensus 136 ~~~~~~~~C~IC~e~~~~~~~~~l~--CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~ 191 (595)
.++...+.|.+|-+-+....+|..| =.|.||..|-+.+|..+-..+ .+.||.
T Consensus 10 ~~~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~----EvyCPS 63 (93)
T 2cs3_A 10 MANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATG----EVYCPS 63 (93)
T ss_dssp SCSCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSS----CCCCTT
T ss_pred CCCCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCC----cEECCC
Confidence 3455678999999988666667665 579999999999999875433 467874
No 89
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=90.61 E-value=0.3 Score=37.13 Aligned_cols=49 Identities=24% Similarity=0.520 Sum_probs=36.0
Q ss_pred CccccccccccccCCCceecCCC--C---cccHhHHHHHHhccccCCCCccccccCCCcCCCccc
Q 007642 140 EEMTCGICFENYPSDRLLAAACG--H---PFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (595)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l~Cg--H---~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (595)
+...|.||++.. .++..+||. | .|...|+..|+..+ + ...|| .|+..+.
T Consensus 5 ~~~~CrIC~~~~--~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~---~----~~~C~--~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNERFRACGCTGELENVHRSCLSTWLTIS---R----NTACQ--ICGVVYN 58 (60)
T ss_dssp SCCEETTTTEEC--SCCCCCSCCCSSGGGSCCHHHHHHHHHHH---T----CSBCT--TTCCBCC
T ss_pred CCCEeEEeecCC--CCceecCcCCCCchhhhHHHHHHHHHHhC---C----CCccC--CCCCeee
Confidence 456799999874 334456754 4 89999999999753 2 36899 8988764
No 90
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=90.47 E-value=0.013 Score=49.49 Aligned_cols=70 Identities=21% Similarity=0.355 Sum_probs=45.3
Q ss_pred Cceeee-cCCCcccccCCcccCCCCCchhHHHHHHhhhHhHHhHHHHHhcCccCCCC-CcceeecCCCCcccccCCCcce
Q 007642 250 NYDVTC-RCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRC-KRPIEKNQGCMHMTCTPPCKFE 327 (595)
Q Consensus 250 ~~~v~C-~C~~~fC~~C~~~~H~p~~C~~~~~~~~k~~~~~e~~~wi~~ntK~CPkC-~~~IEK~~GCnhmtC~~~C~~~ 327 (595)
.+...| .|+++||..|....|....-...+..+.... +. ......|+.+ +.+++ ++|. .|+..
T Consensus 16 ~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~-~~------~~~~~~C~~H~~e~l~-------~fC~-~~~~~ 80 (101)
T 2jun_A 16 DAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIP-DS------HIRGLMCLEHEDEKVN-------MYCV-TDDQL 80 (101)
T ss_dssp BCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCC-SC------CSSCCCCSSCSSSCCC-------EEET-TTTEE
T ss_pred CceEECCcCChHHhHHHCHHHhccCCccCCCeeecccc-cc------CccCCcCcCcCCCcce-------EECC-CCCCc
Confidence 345689 9999999999987676321111111000000 00 0112579999 58899 9999 89999
Q ss_pred eeecccc
Q 007642 328 FCWLCLG 334 (595)
Q Consensus 328 FCw~C~~ 334 (595)
+|+.|..
T Consensus 81 iC~~C~~ 87 (101)
T 2jun_A 81 ICALCKL 87 (101)
T ss_dssp ECHHHHH
T ss_pred cchhcCC
Confidence 9999974
No 91
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.95 E-value=0.4 Score=34.57 Aligned_cols=25 Identities=28% Similarity=0.830 Sum_probs=22.8
Q ss_pred CccccCCCCcccCCcccccccccCC
Q 007642 570 SHWYCDQCTYANVNSATACAMCQHS 594 (595)
Q Consensus 570 ~~~~~~~c~~~~~~~~~~c~~c~~~ 594 (595)
+.|.|+-|.+.|.-+...|.+|.-+
T Consensus 10 gsW~C~~C~v~N~a~~~kC~aC~~p 34 (47)
T 2ebr_A 10 GSWDCELCLVQNKADSTKCLACESA 34 (47)
T ss_dssp SSCCCSSSCCCCCSSCSBCSSSCCB
T ss_pred CeeECCeeecCCcCCcceecCcCCC
Confidence 5699999999999999999999655
No 92
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.30 E-value=0.84 Score=35.48 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHcCCChhhhHHHhhhcH
Q 007642 79 QEEDITRISTVLS-ISKVAASILLRFYNWSVSKVHDEWFADE 119 (595)
Q Consensus 79 ~~~~i~~v~~vl~-i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 119 (595)
+.+.|.+...|.+ ..+..|+.+|...+||.+..+..||.+.
T Consensus 18 ~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~ 59 (67)
T 2dam_A 18 QTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQ 59 (67)
T ss_dssp HHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 5567999999999 7899999999999999999999999764
No 93
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.16 E-value=0.86 Score=35.34 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHHhhhcH
Q 007642 81 EDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADE 119 (595)
Q Consensus 81 ~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 119 (595)
+.|.+...|.+.++..|...|...+||.+..+..||.++
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~~ 57 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQET 57 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 468889999999999999999999999999999998653
No 94
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=86.69 E-value=0.72 Score=32.94 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhCCCH-HHHHHHHHHcCCChhhhHHHhh
Q 007642 79 QEEDITRISTVLSISK-VAASILLRFYNWSVSKVHDEWF 116 (595)
Q Consensus 79 ~~~~i~~v~~vl~i~~-~~a~~LL~~~~W~~~~l~e~~~ 116 (595)
..+.|.+..++.++++ +.|+..|-..+||.+.....||
T Consensus 5 ~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~ 43 (45)
T 3e21_A 5 REMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVI 43 (45)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC-
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHc
Confidence 4567889999999995 9999999999999988777665
No 95
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=85.76 E-value=0.15 Score=42.87 Aligned_cols=26 Identities=35% Similarity=0.885 Sum_probs=0.0
Q ss_pred CccccCCCCcccCCcccccccccCCC
Q 007642 570 SHWYCDQCTYANVNSATACAMCQHSR 595 (595)
Q Consensus 570 ~~~~~~~c~~~~~~~~~~c~~c~~~~ 595 (595)
+.|.|+.|+|.|..++..|.||..+|
T Consensus 8 ~~W~C~~C~~~N~~~~~kC~aC~~pr 33 (98)
T 3gj7_B 8 SSWQCDTCLLQNKVTDNKCIACQAAK 33 (98)
T ss_dssp --------------------------
T ss_pred CcccCCccccCChhhcccccccCCCC
Confidence 56999999999999999999997654
No 96
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=85.29 E-value=1.3 Score=37.47 Aligned_cols=40 Identities=15% Similarity=0.162 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHHhhhc
Q 007642 79 QEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (595)
Q Consensus 79 ~~~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~~ 118 (595)
+++.|..|.++.+++.+.|+..|...+||+...++.++.+
T Consensus 39 ~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg 78 (104)
T 1wj7_A 39 FEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEG 78 (104)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4678999999999999999999999999999999888764
No 97
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=84.56 E-value=0.36 Score=40.59 Aligned_cols=26 Identities=31% Similarity=0.857 Sum_probs=23.7
Q ss_pred CccccCCCCcccCCcccccccccCCC
Q 007642 570 SHWYCDQCTYANVNSATACAMCQHSR 595 (595)
Q Consensus 570 ~~~~~~~c~~~~~~~~~~c~~c~~~~ 595 (595)
+.|.|.-|++.|..+...|.+|..++
T Consensus 71 g~W~C~~C~~~N~~~~~~C~aC~tpk 96 (98)
T 3gj7_B 71 GTWDCDTCLVQNKPEAVKCVACETPK 96 (98)
T ss_dssp CCEECTTTCCEECTTCSBCTTTCCBC
T ss_pred CcccCCcCcCCChhhcceecccCCCC
Confidence 56999999999999999999998664
No 98
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=82.91 E-value=0.43 Score=36.25 Aligned_cols=33 Identities=24% Similarity=0.743 Sum_probs=23.1
Q ss_pred ecCCCcccccCCcccCCCCCchhHHHHHHhhhHhHHhHHHHHhcCccCCCCCcceeec
Q 007642 255 CRCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKN 312 (595)
Q Consensus 255 C~C~~~fC~~C~~~~H~p~~C~~~~~~~~k~~~~~e~~~wi~~ntK~CPkC~~~IEK~ 312 (595)
=.|||.||..|... |. ..+...||.|+.++.++
T Consensus 24 ~~CgH~fC~~Ci~~------------~~-------------~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 24 NVCGHTLCESCVDL------------LF-------------VRGAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCCEEHHHHHH------------HH-------------HTTSSSCTTTCCCCSSC
T ss_pred CCCCCHhHHHHHHH------------HH-------------HcCCCcCCCCCCccccc
Confidence 37999999888732 21 11236899999998753
No 99
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=82.23 E-value=0.34 Score=40.51 Aligned_cols=34 Identities=21% Similarity=0.617 Sum_probs=28.3
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccCC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~H 339 (595)
-.||-|...+. +.++|. .|||.||+.|+..|-..
T Consensus 23 ~~C~IC~~~~~-----~p~~~~-~CgH~FC~~Ci~~~~~~ 56 (100)
T 3lrq_A 23 FRCFICMEKLR-----DARLCP-HCSKLCCFSCIRRWLTE 56 (100)
T ss_dssp TBCTTTCSBCS-----SEEECT-TTCCEEEHHHHHHHHHH
T ss_pred CCCccCCcccc-----CccccC-CCCChhhHHHHHHHHHH
Confidence 58999998886 357777 79999999999998544
No 100
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=81.16 E-value=3.4 Score=32.39 Aligned_cols=41 Identities=12% Similarity=0.310 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHh-CCCHHHHHHHHHHcCCChhhhHHHhhhc
Q 007642 78 RQEEDITRISTVL-SISKVAASILLRFYNWSVSKVHDEWFAD 118 (595)
Q Consensus 78 ~~~~~i~~v~~vl-~i~~~~a~~LL~~~~W~~~~l~e~~~~~ 118 (595)
.+...|.+|.++| .+..+....+|.+|+-|++.++...+++
T Consensus 12 ~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~ 53 (71)
T 2di0_A 12 ELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE 53 (71)
T ss_dssp HHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 5678899999998 6789999999999999999999887764
No 101
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.74 E-value=3.6 Score=30.81 Aligned_cols=25 Identities=24% Similarity=0.736 Sum_probs=22.8
Q ss_pred CccccCCCCcccCCcccccccccCC
Q 007642 570 SHWYCDQCTYANVNSATACAMCQHS 594 (595)
Q Consensus 570 ~~~~~~~c~~~~~~~~~~c~~c~~~ 594 (595)
+.|-|+-|-+.|..+...|..|.-+
T Consensus 30 GsWeC~~C~V~N~a~~~kC~ACetp 54 (57)
T 2ebv_A 30 GSWECSVCCVSNNAEDNKCVSCMSE 54 (57)
T ss_dssp SSCCCSSSCCCCCSSCSBCSSSCCB
T ss_pred CeeeCCeeEccCccCCceeeEcCCc
Confidence 5699999999999999999999755
No 102
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=80.54 E-value=0.93 Score=44.34 Aligned_cols=50 Identities=22% Similarity=0.534 Sum_probs=37.4
Q ss_pred ccccccccccccCCCceec-CCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchh
Q 007642 141 EMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (595)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (595)
...|.||.+..... ... .|+|.|...|+..|+... + ..+|| .|+..++..
T Consensus 180 i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~---~----~~~CP--~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSN---A----EPRCP--HCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTC---S----SCBCT--TTCCBCCSC
T ss_pred CCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhC---C----CCCCC--CCCCCCCCC
Confidence 56799999987532 222 399999999999998652 1 35899 899887543
No 103
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=80.04 E-value=0.75 Score=37.07 Aligned_cols=50 Identities=22% Similarity=0.452 Sum_probs=33.7
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcc-----eeeecccccccCCCCCCCCcccCCch
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKF-----EFCWLCLGQWSDHGERTGGFYACNRY 352 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~-----~FCw~C~~~~~~H~~~~g~~y~C~~~ 352 (595)
..||.|+.+|+.++| +..|. .|+. .||..|+.+......-..--|.||.-
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~-~C~~~~~~~afCPeCgq~Le~lkACGA~~yFC~~C 57 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCE-TCAKDFSLQALCPDCRQPLQVLKACGAVDYFCQNG 57 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECT-TTCCEEEEEEECSSSCSCCCEEEETTEEEECCTTT
T ss_pred CCCCCCCCccccCCC--ceECc-cccccCCCcccCcchhhHHHHHHhcCCcCeeeccC
Confidence 579999999999888 55688 7864 37888888764322111134677753
No 104
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=79.44 E-value=1.1 Score=29.70 Aligned_cols=25 Identities=28% Similarity=0.915 Sum_probs=22.9
Q ss_pred ccccCCCCcccCCcccccccccCCC
Q 007642 571 HWYCDQCTYANVNSATACAMCQHSR 595 (595)
Q Consensus 571 ~~~~~~c~~~~~~~~~~c~~c~~~~ 595 (595)
-|.|..|.+.|-..-..|.+|..++
T Consensus 6 DW~C~~C~~~Nfa~R~~C~~C~~pk 30 (33)
T 2k1p_A 6 DWQCKTCSNVNWARRSECNMCNTPK 30 (33)
T ss_dssp SCBCSSSCCBCCTTCSBCSSSCCBT
T ss_pred CcccCCCCCccccccccccccCCcC
Confidence 3999999999999999999998775
No 105
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=77.96 E-value=1.4 Score=32.53 Aligned_cols=27 Identities=30% Similarity=0.795 Sum_probs=21.7
Q ss_pred cCCCcccccCCcccCCCCCchhHHHHHHhhhHhHHhHHHHHhcCccCCCCCcceee
Q 007642 256 RCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEK 311 (595)
Q Consensus 256 ~C~~~fC~~C~~~~H~p~~C~~~~~~~~k~~~~~e~~~wi~~ntK~CPkC~~~IEK 311 (595)
.|||.||..|...+ ...||.|+..+..
T Consensus 23 ~CgH~fC~~Ci~~~-----------------------------~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 23 PCLHTLCSGCLEAS-----------------------------GMQCPICQAPWPL 49 (56)
T ss_dssp TTSCCSBTTTCSSS-----------------------------SSSCSSCCSSSSC
T ss_pred CCCCcccHHHHccC-----------------------------CCCCCcCCcEeec
Confidence 69999999998551 2789999988863
No 106
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.42 E-value=1.2 Score=34.75 Aligned_cols=36 Identities=22% Similarity=0.747 Sum_probs=25.5
Q ss_pred eee-cCCCcccccCCcccCCCCCchhHHHHHHhhhHhHHhHHHHHhcCccCCCCCcceeecCC
Q 007642 253 VTC-RCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKNQG 314 (595)
Q Consensus 253 v~C-~C~~~fC~~C~~~~H~p~~C~~~~~~~~k~~~~~e~~~wi~~ntK~CPkC~~~IEK~~G 314 (595)
+.. .|+|.||..|... |+.. ...||.|+..|....|
T Consensus 39 ~~~l~C~H~fh~~Ci~~------------w~~~--------------~~~CP~Cr~~~~~~~g 75 (75)
T 1x4j_A 39 LRVLPCNHEFHAKCVDK------------WLKA--------------NRTCPICRADSGPSSG 75 (75)
T ss_dssp EEEETTTEEEETTHHHH------------HHHH--------------CSSCTTTCCCCCCCCC
T ss_pred EEEECCCCHhHHHHHHH------------HHHc--------------CCcCcCcCCcCCCCCC
Confidence 444 7999999888633 3321 1589999999987665
No 107
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=76.57 E-value=0.71 Score=38.25 Aligned_cols=50 Identities=22% Similarity=0.503 Sum_probs=35.7
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcce-----eeecccccccCCCCCCCCcccCCch
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFE-----FCWLCLGQWSDHGERTGGFYACNRY 352 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~-----FCw~C~~~~~~H~~~~g~~y~C~~~ 352 (595)
..||.|+.+++.++| +.+|. .|+.. ||.-|.++......-..-.|.|+.-
T Consensus 33 ~~CP~Cq~eL~~~g~--~~hC~-~C~~~f~~~a~CPdC~q~LevLkACGAvdYFC~~c 87 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--HARCR-SCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHG 87 (101)
T ss_dssp CBCSSSCSBEEEETT--EEEET-TTCCEEEEEEECTTTCSBCEEEEETTEEEEEETTT
T ss_pred ccCccCCCcceecCC--EEECc-cccchhhccccCcchhhHHHHHHHhcCcchhhccC
Confidence 799999999999988 66798 79765 6899988764332211135677754
No 108
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=75.98 E-value=4.6 Score=27.32 Aligned_cols=35 Identities=11% Similarity=0.111 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHHh
Q 007642 80 EEDITRISTVLSISKVAASILLRFYNWSVSKVHDEW 115 (595)
Q Consensus 80 ~~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~ 115 (595)
.+.|.++.+. |.++..|...|+..+||++...+.+
T Consensus 5 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4568888886 9999999999999999998876643
No 109
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=75.32 E-value=1 Score=29.67 Aligned_cols=26 Identities=23% Similarity=0.809 Sum_probs=23.2
Q ss_pred CccccCCCCcccCCcccccccccCCC
Q 007642 570 SHWYCDQCTYANVNSATACAMCQHSR 595 (595)
Q Consensus 570 ~~~~~~~c~~~~~~~~~~c~~c~~~~ 595 (595)
+-|.|..|.+.|-..-..|..|..+|
T Consensus 4 gDW~C~~C~~~Nfa~r~~C~~C~~pr 29 (32)
T 2lk0_A 4 EDWLCNKCCLNNFRKRLKCFRCGADK 29 (32)
T ss_dssp SEEECTTTCCEEETTCCBCTTTCCBT
T ss_pred CCCCcCcCcCCcChhcceecCCCCcC
Confidence 44999999999999999999998765
No 110
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.29 E-value=1.3 Score=34.21 Aligned_cols=32 Identities=28% Similarity=0.701 Sum_probs=25.1
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~ 338 (595)
..||-|...+. +.++- .|||.||+.|+..|..
T Consensus 21 ~~C~IC~~~~~-----~~~~~--~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 21 VICPICLDILQ-----KPVTI--DCGHNFCLKCITQIGE 52 (73)
T ss_dssp CBCTTTCSBCS-----SEEEC--TTCCEEEHHHHHHHCS
T ss_pred CEeccCCcccC-----CeEEc--CCCChhhHHHHHHHHH
Confidence 58999988776 23444 3999999999999875
No 111
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=73.66 E-value=0.82 Score=41.77 Aligned_cols=34 Identities=26% Similarity=0.525 Sum_probs=27.4
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccCC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~H 339 (595)
-.||-|...+.. .++.. .|||.||+.|...|-..
T Consensus 55 ~~C~IC~~~~~~-----p~~~~-~CgH~fC~~Ci~~~~~~ 88 (165)
T 2ckl_B 55 LMCPICLDMLKN-----TMTTK-ECLHRFCADCIITALRS 88 (165)
T ss_dssp HBCTTTSSBCSS-----EEEET-TTCCEEEHHHHHHHHHT
T ss_pred CCCcccChHhhC-----cCEeC-CCCChhHHHHHHHHHHh
Confidence 489999888773 46665 59999999999998654
No 112
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.13 E-value=0.91 Score=34.09 Aligned_cols=32 Identities=31% Similarity=0.749 Sum_probs=25.1
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~ 338 (595)
-.||-|...+.. .++- .|||.||+.|+..|-.
T Consensus 21 ~~C~IC~~~~~~-----p~~~--~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 21 VICPICLDILQK-----PVTI--DCGHNFCLKCITQIGE 52 (63)
T ss_dssp CBCTTTCSBCSS-----CEEC--TTSSEECHHHHHHHHH
T ss_pred CCCCcCCchhCC-----eEEe--CCCCcchHHHHHHHHH
Confidence 579999887762 3444 3999999999999865
No 113
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=72.21 E-value=1.2 Score=39.41 Aligned_cols=34 Identities=24% Similarity=0.646 Sum_probs=25.9
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccCCC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~H~ 340 (595)
-.||-|...+. +.++. +|||.||..|...|-...
T Consensus 54 ~~C~iC~~~~~-----~~~~~--~CgH~fc~~Ci~~~~~~~ 87 (138)
T 4ayc_A 54 LQCIICSEYFI-----EAVTL--NCAHSFCSYCINEWMKRK 87 (138)
T ss_dssp SBCTTTCSBCS-----SEEEE--TTSCEEEHHHHHHHTTTC
T ss_pred CCCcccCcccC-----CceEC--CCCCCccHHHHHHHHHcC
Confidence 47999988775 23444 499999999999986543
No 114
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.10 E-value=0.95 Score=35.08 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=25.4
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~ 338 (595)
..||-|...+.. .++-. .|||.||+.|+..|-.
T Consensus 16 ~~C~IC~~~~~~-----p~~~~-~CgH~fC~~Ci~~~~~ 48 (72)
T 2djb_A 16 ILCSICKGYLID-----ATTIT-ECLHTFCKSCIVRHFY 48 (72)
T ss_dssp GSCTTTSSCCSS-----CEECS-SSCCEECHHHHHHHHH
T ss_pred CCCCCCChHHHC-----cCEEC-CCCCHHHHHHHHHHHH
Confidence 589999887763 35554 5999999999988854
No 115
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=71.28 E-value=55 Score=30.90 Aligned_cols=11 Identities=27% Similarity=0.564 Sum_probs=8.6
Q ss_pred CccCCCCCcce
Q 007642 299 SKPCPRCKRPI 309 (595)
Q Consensus 299 tK~CPkC~~~I 309 (595)
...|++|+.++
T Consensus 10 ~~~Cw~C~~~~ 20 (207)
T 3bvo_A 10 YPRCWNCGGPW 20 (207)
T ss_dssp -CBCSSSCCBC
T ss_pred CCCCCCCCCCc
Confidence 47899999874
No 116
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=71.00 E-value=1.6 Score=36.00 Aligned_cols=26 Identities=27% Similarity=0.839 Sum_probs=23.4
Q ss_pred CccccCCCCcccCCcccccccccCCC
Q 007642 570 SHWYCDQCTYANVNSATACAMCQHSR 595 (595)
Q Consensus 570 ~~~~~~~c~~~~~~~~~~c~~c~~~~ 595 (595)
+.|.|..|++.|.-+.+.|.+|..++
T Consensus 64 g~W~C~~C~~~N~a~~~~C~~C~~pk 89 (92)
T 3gj8_B 64 GSWDCEVCLVQNKADSTKCIACESAK 89 (92)
T ss_dssp CCEECTTTCCEECSSCSBCTTTCCBC
T ss_pred CcccCCcCCcCChhhcccccccCCCC
Confidence 55999999999999999999997653
No 117
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=70.48 E-value=1.5 Score=35.54 Aligned_cols=30 Identities=27% Similarity=0.713 Sum_probs=26.1
Q ss_pred CccCCCCCcceeecCCCCcccccCCCcceee
Q 007642 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFC 329 (595)
Q Consensus 299 tK~CPkC~~~IEK~~GCnhmtC~~~C~~~FC 329 (595)
..+||.|+....+..+=..+.|. .|++.|-
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~-~Cg~~~a 56 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCS-YCDYKFT 56 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEET-TTCCEEE
T ss_pred cCcCCCCCCcceeccCCCeEECC-CCCCEec
Confidence 46999999999999888899999 7888764
No 118
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=70.42 E-value=1.4 Score=35.22 Aligned_cols=35 Identities=29% Similarity=0.851 Sum_probs=23.7
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeeccccccc
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWS 337 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~ 337 (595)
..||-|..++.. ..-..+.|. |||.||..|+..+.
T Consensus 12 ~~CpICle~~~~-~d~~~~p~~--CGH~fC~~Cl~~~~ 46 (78)
T 1e4u_A 12 VECPLCMEPLEI-DDINFFPCT--CGYQICRFCWHRIR 46 (78)
T ss_dssp CBCTTTCCBCCT-TTTTCCSST--TSCCCCHHHHHHHT
T ss_pred CcCCccCccCcc-ccccccccC--CCCCcCHHHHHHHH
Confidence 579999987752 111223354 99999999987653
No 119
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=70.08 E-value=2.6 Score=30.39 Aligned_cols=29 Identities=21% Similarity=0.628 Sum_probs=20.9
Q ss_pred CccCCCCCc-ceeecCCCCcccccCCCccee
Q 007642 299 SKPCPRCKR-PIEKNQGCMHMTCTPPCKFEF 328 (595)
Q Consensus 299 tK~CPkC~~-~IEK~~GCnhmtC~~~C~~~F 328 (595)
...||.|+. .|.-+..=..+.|. .||..|
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~-~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCA-KCGYVI 34 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEES-SSCCBC
T ss_pred cEeCcCCCCcceEEcCCCCeEECc-ccCCcc
Confidence 468999998 88766665667887 565543
No 120
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=69.97 E-value=2.2 Score=33.18 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=23.0
Q ss_pred ccCCCCCcceeecCCCCcccccCCCccee
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEF 328 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~F 328 (595)
-.||.|+.+++-..+...++|. .||..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~-~cg~~Y 36 (68)
T 2jr6_A 9 LVCPVTKGRLEYHQDKQELWSR-QAKLAY 36 (68)
T ss_dssp CBCSSSCCBCEEETTTTEEEET-TTTEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcC-CCCcEe
Confidence 5899999999988888888887 676555
No 121
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=69.93 E-value=1.3 Score=34.70 Aligned_cols=29 Identities=24% Similarity=0.800 Sum_probs=21.6
Q ss_pred cCCCcccccCCcccCCCCCchhHHHHHHhhhHhHHhHHHHHhcCccCCCCCccee
Q 007642 256 RCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIE 310 (595)
Q Consensus 256 ~C~~~fC~~C~~~~H~p~~C~~~~~~~~k~~~~~e~~~wi~~ntK~CPkC~~~IE 310 (595)
.|+|.||..|... |+.. ...||.|+..|.
T Consensus 35 ~C~H~fc~~Ci~~------------~~~~--------------~~~CP~Cr~~~~ 63 (78)
T 2ect_A 35 PCNHLFHDSCIVP------------WLEQ--------------HDSCPVCRKSLT 63 (78)
T ss_dssp TTSCEEETTTTHH------------HHTT--------------TCSCTTTCCCCC
T ss_pred CCCCeecHHHHHH------------HHHc--------------CCcCcCcCCccC
Confidence 7999999999743 3211 168999998886
No 122
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=68.20 E-value=1.3 Score=37.34 Aligned_cols=34 Identities=21% Similarity=0.428 Sum_probs=27.0
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccCC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~H 339 (595)
-.||-|...+. +.++.. .|||.||+.|+..|-..
T Consensus 16 ~~C~IC~~~~~-----~p~~~~-~CgH~fC~~Ci~~~~~~ 49 (108)
T 2ckl_A 16 LMCVLCGGYFI-----DATTII-ECLHSFCKTCIVRYLET 49 (108)
T ss_dssp TBCTTTSSBCS-----SEEEET-TTCCEEEHHHHHHHHTS
T ss_pred CCCccCChHHh-----CcCEeC-CCCChhhHHHHHHHHHh
Confidence 68999988876 246664 49999999999988654
No 123
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=68.09 E-value=1.5 Score=34.34 Aligned_cols=33 Identities=12% Similarity=0.235 Sum_probs=25.6
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccCC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~H 339 (595)
-.||-|...+. +.++- .|||.||..|...|-..
T Consensus 9 ~~C~IC~~~~~-----~Pv~~--~CgH~fc~~Ci~~~~~~ 41 (78)
T 1t1h_A 9 FRCPISLELMK-----DPVIV--STGQTYERSSIQKWLDA 41 (78)
T ss_dssp SSCTTTSCCCS-----SEEEE--TTTEEEEHHHHHHHHTT
T ss_pred CCCCCcccccc-----CCEEc--CCCCeecHHHHHHHHHH
Confidence 57999988775 23444 49999999999998754
No 124
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=67.95 E-value=1.3 Score=35.10 Aligned_cols=33 Identities=21% Similarity=0.670 Sum_probs=24.5
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccCC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~H 339 (595)
-.||-|...+.. .+.- .|+|.||..|+..|-..
T Consensus 20 ~~C~IC~~~~~~-----p~~~--~CgH~fC~~Ci~~~~~~ 52 (85)
T 2ecw_A 20 VTCPICLELLKE-----PVSA--DCNHSFCRACITLNYES 52 (85)
T ss_dssp TSCTTTCSCCSS-----CEEC--TTSCCBCHHHHHHHHHH
T ss_pred CCCcCCChhhCc-----ceeC--CCCCHHHHHHHHHHHHh
Confidence 579999887753 2343 49999999999887543
No 125
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=67.88 E-value=2.6 Score=35.74 Aligned_cols=34 Identities=21% Similarity=0.544 Sum_probs=25.4
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccCCC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~H~ 340 (595)
-.||-|...+.. .++- .|||.||..|+..|-.++
T Consensus 16 ~~C~iC~~~~~~-----p~~~--~CgH~fC~~Ci~~~~~~~ 49 (115)
T 3l11_A 16 CQCGICMEILVE-----PVTL--PCNHTLCKPCFQSTVEKA 49 (115)
T ss_dssp HBCTTTCSBCSS-----CEEC--TTSCEECHHHHCCCCCTT
T ss_pred CCCccCCcccCc-----eeEc--CCCCHHhHHHHHHHHhHC
Confidence 479999877652 2332 499999999999997653
No 126
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=67.63 E-value=1.4 Score=38.11 Aligned_cols=32 Identities=22% Similarity=0.438 Sum_probs=24.8
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~ 338 (595)
-.||-|...+. +.++- .|||.||..|+..|-.
T Consensus 53 ~~C~IC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~ 84 (124)
T 3fl2_A 53 FQCICCQELVF-----RPITT--VCQHNVCKDCLDRSFR 84 (124)
T ss_dssp TBCTTTSSBCS-----SEEEC--TTSCEEEHHHHHHHHH
T ss_pred CCCCcCChHHc-----CcEEe--eCCCcccHHHHHHHHh
Confidence 57999988776 23443 4999999999988864
No 127
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.51 E-value=1.5 Score=33.15 Aligned_cols=32 Identities=22% Similarity=0.559 Sum_probs=24.8
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~ 338 (595)
..||-|...+.. .++ . .|||.||+.|+..|-.
T Consensus 16 ~~C~IC~~~~~~-----p~~-~-~CgH~fC~~Ci~~~~~ 47 (66)
T 2ecy_A 16 YKCEKCHLVLCS-----PKQ-T-ECGHRFCESCMAALLS 47 (66)
T ss_dssp EECTTTCCEESS-----CCC-C-SSSCCCCHHHHHHHHT
T ss_pred CCCCCCChHhcC-----eeE-C-CCCCHHHHHHHHHHHH
Confidence 579999887752 244 3 5999999999999864
No 128
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=67.23 E-value=2.3 Score=33.21 Aligned_cols=33 Identities=18% Similarity=0.595 Sum_probs=25.2
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccCC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~H 339 (595)
-.||-|...+.. .++- .|||.||..|+..|-..
T Consensus 13 ~~C~IC~~~~~~-----p~~l--~CgH~fC~~Ci~~~~~~ 45 (79)
T 2egp_A 13 VTCPICLELLTE-----PLSL--DCGHSLCRACITVSNKE 45 (79)
T ss_dssp CEETTTTEECSS-----CCCC--SSSCCCCHHHHSCCCCC
T ss_pred CCCcCCCcccCC-----eeEC--CCCCHHHHHHHHHHHHh
Confidence 579999877652 3444 49999999999988655
No 129
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=67.14 E-value=2.6 Score=30.67 Aligned_cols=27 Identities=19% Similarity=0.556 Sum_probs=25.0
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccc
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLG 334 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~ 334 (595)
..||.++.+++ ++|. .|+...|+.|..
T Consensus 9 ~~C~~H~e~l~-------lfC~-~d~~~iC~~C~~ 35 (53)
T 2did_A 9 SLCPQHHEALS-------LFCY-EDQEAVCLICAI 35 (53)
T ss_dssp CBCTTTCCBCC-------EEES-SSCSEECHHHHT
T ss_pred CcChhhCCeee-------EEeC-CCCeEEeccccC
Confidence 68999999999 9999 899999999974
No 130
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=66.91 E-value=1.6 Score=36.79 Aligned_cols=33 Identities=27% Similarity=0.676 Sum_probs=25.2
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccCC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~H 339 (595)
-.||-|...+. +.++ . .|||.||+.|+..|-..
T Consensus 22 ~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~ 54 (112)
T 1jm7_A 22 LECPICLELIK-----EPVS-T-KCDHIFCKFCMLKLLNQ 54 (112)
T ss_dssp TSCSSSCCCCS-----SCCB-C-TTSCCCCSHHHHHHHHS
T ss_pred CCCcccChhhc-----CeEE-C-CCCCHHHHHHHHHHHHh
Confidence 58999998775 2244 3 49999999999988654
No 131
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=66.70 E-value=3.5 Score=28.26 Aligned_cols=27 Identities=15% Similarity=0.450 Sum_probs=24.8
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccc
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLG 334 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~ 334 (595)
+.|+.++.+++ ++|. .|+...|+.|..
T Consensus 4 ~~C~~H~e~l~-------lfC~-~d~~~iC~~C~~ 30 (42)
T 1fre_A 4 EKCSEHDERLK-------LYCK-DDGTLSCVICRD 30 (42)
T ss_dssp CCCCSSCSSCC-------CCCC-SSSSSSCCTTSS
T ss_pred ccchhhCCeee-------EEeC-CCCeEEeccCCC
Confidence 67999999999 9999 899999999975
No 132
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=66.69 E-value=1.6 Score=34.07 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=25.3
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccCC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~H 339 (595)
-.||-|...+. +.++-. .|||.||+.|+..|-..
T Consensus 16 ~~C~IC~~~~~-----~p~~~~-~CgH~fC~~Ci~~~~~~ 49 (74)
T 2yur_A 16 LLCLICKDIMT-----DAVVIP-CCGNSYCDECIRTALLE 49 (74)
T ss_dssp GSCSSSCCCCT-----TCEECS-SSCCEECTTHHHHHHHH
T ss_pred CCCcCCChHHh-----CCeEcC-CCCCHHHHHHHHHHHHh
Confidence 57999988776 234432 39999999999988643
No 133
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=66.66 E-value=1.2 Score=36.88 Aligned_cols=26 Identities=23% Similarity=0.756 Sum_probs=0.0
Q ss_pred CccccCCCCcccCCcccccccccCCC
Q 007642 570 SHWYCDQCTYANVNSATACAMCQHSR 595 (595)
Q Consensus 570 ~~~~~~~c~~~~~~~~~~c~~c~~~~ 595 (595)
+.|.|..|++.|..+...|.+|..+|
T Consensus 7 g~W~C~~C~~~N~~~~~~C~~C~~pk 32 (92)
T 3gj8_B 7 GSWECPVCCVSNKAEDSRCVSCTSEK 32 (92)
T ss_dssp --------------------------
T ss_pred cCCCCCcCCCEeccccceecccCCCC
Confidence 45999999999999999999997653
No 134
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=66.40 E-value=1.6 Score=36.10 Aligned_cols=34 Identities=21% Similarity=0.548 Sum_probs=26.8
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccCC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~H 339 (595)
-.||-|...+.. .++.. .|||.||..|...|-..
T Consensus 23 ~~C~IC~~~~~~-----p~~~~-~CgH~fC~~Ci~~~~~~ 56 (99)
T 2y43_A 23 LRCGICFEYFNI-----AMIIP-QCSHNYCSLCIRKFLSY 56 (99)
T ss_dssp TBCTTTCSBCSS-----EEECT-TTCCEEEHHHHHHHHTT
T ss_pred CCcccCChhhCC-----cCEEC-CCCCHhhHHHHHHHHHC
Confidence 689999987763 45554 59999999999988654
No 135
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=66.02 E-value=31 Score=37.02 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHc
Q 007642 510 NYFENLVRALEN 521 (595)
Q Consensus 510 ~~~~~l~~~le~ 521 (595)
..++++.+.|++
T Consensus 176 ~sY~~~QKQLeQ 187 (562)
T 3ghg_A 176 KDYEDQQKQLEQ 187 (562)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456777887776
No 136
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=65.64 E-value=2.4 Score=30.13 Aligned_cols=26 Identities=23% Similarity=0.696 Sum_probs=23.9
Q ss_pred ccCCCCC-cceeecCCCCcccccCCCcceeeeccc
Q 007642 300 KPCPRCK-RPIEKNQGCMHMTCTPPCKFEFCWLCL 333 (595)
Q Consensus 300 K~CPkC~-~~IEK~~GCnhmtC~~~C~~~FCw~C~ 333 (595)
..|+.++ .+++ ++|. .|+...||.|.
T Consensus 7 ~~C~~H~~e~l~-------lfC~-~d~~~iC~~C~ 33 (48)
T 3ddt_A 7 PMCKEHEDEKIN-------IYCL-TCEVPTCSMCK 33 (48)
T ss_dssp CBCSSSTTSBCC-------EEET-TTTEEECHHHH
T ss_pred CcCCCCCCcccc-------EEcC-CCCeeEccccc
Confidence 5799999 8899 9999 89999999996
No 137
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=64.85 E-value=3.2 Score=29.85 Aligned_cols=37 Identities=19% Similarity=0.454 Sum_probs=26.7
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccCC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~H 339 (595)
..||-|...+..... .+.-. .|+|.||..|+..|...
T Consensus 6 ~~C~IC~~~~~~~~~--~~~~~-~C~H~f~~~Ci~~w~~~ 42 (55)
T 1iym_A 6 VECAVCLAELEDGEE--ARFLP-RCGHGFHAECVDMWLGS 42 (55)
T ss_dssp CCCTTTCCCCCTTSC--CEECS-SSCCEECTTHHHHTTTT
T ss_pred CcCccCCccccCCCc--eEECC-CCCCcccHHHHHHHHHc
Confidence 679999888764432 23333 49999999999999644
No 138
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=64.59 E-value=1.9 Score=32.13 Aligned_cols=29 Identities=21% Similarity=0.551 Sum_probs=20.3
Q ss_pred CccCCCCCcceeecCCCCcccccCCCccee
Q 007642 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEF 328 (595)
Q Consensus 299 tK~CPkC~~~IEK~~GCnhmtC~~~C~~~F 328 (595)
.+.||+|+..+--...-+.++|. .|++.+
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~-kCgyt~ 46 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCG-RCGYTE 46 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECT-TTCCCE
T ss_pred cccCcCCCCceeEeccCCEEECC-CCCCEE
Confidence 48899999855422334678998 788764
No 139
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=64.57 E-value=2.6 Score=32.82 Aligned_cols=31 Identities=26% Similarity=0.736 Sum_probs=27.3
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccCCC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~H~ 340 (595)
..||.++.+++ ++|. .|+...|+.|.. ..|.
T Consensus 19 ~~C~~H~e~l~-------lfC~-~d~~~iC~~C~~--~~H~ 49 (72)
T 2csv_A 19 RKCPVHGKTME-------LFCQ-TDQTCICYLCMF--QEHK 49 (72)
T ss_dssp CBCTTTCCBCC-------EEES-SSCCEECHHHHH--TTTS
T ss_pred CcCcccCCceE-------EEeC-CCCeEEccccCC--CCCC
Confidence 68999999999 9999 899999999975 5554
No 140
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.48 E-value=1.8 Score=34.62 Aligned_cols=37 Identities=22% Similarity=0.457 Sum_probs=25.9
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccCC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~H 339 (595)
-.||-|...+..... ..+.- .|||.||+.|+..|-..
T Consensus 16 ~~C~IC~~~~~~~~~-~~~~~--~CgH~fC~~Ci~~~~~~ 52 (88)
T 2ct2_A 16 LECPICMESFTEEQL-RPKLL--HCGHTICRQCLEKLLAS 52 (88)
T ss_dssp CBCTTTCCBCCTTSS-CEEEC--SSSCEEEHHHHHHHHHH
T ss_pred CCCccCCccccccCC-CeEEC--CCCChhhHHHHHHHHHc
Confidence 579999887764321 12333 49999999999998644
No 141
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=62.77 E-value=2.3 Score=30.60 Aligned_cols=37 Identities=19% Similarity=0.466 Sum_probs=26.0
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccCC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~H 339 (595)
..||-|...+...+ ..+.-. .|+|.||+.|+..|...
T Consensus 6 ~~C~IC~~~~~~~~--~~~~~~-~CgH~fc~~Ci~~~~~~ 42 (55)
T 2ecm_A 6 SGCPICLEDIHTSR--VVAHVL-PCGHLLHRTCYEEMLKE 42 (55)
T ss_dssp CSCTTTCCCCCTTT--SCEEEC-TTSCEEETTHHHHHHHH
T ss_pred CcCcccChhhcCCC--cCeEec-CCCCcccHHHHHHHHHc
Confidence 57999988775221 224444 59999999999988543
No 142
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=62.39 E-value=3.7 Score=29.87 Aligned_cols=28 Identities=29% Similarity=0.706 Sum_probs=18.3
Q ss_pred CccCCCCCccee-ecCCCCcccccCCCccee
Q 007642 299 SKPCPRCKRPIE-KNQGCMHMTCTPPCKFEF 328 (595)
Q Consensus 299 tK~CPkC~~~IE-K~~GCnhmtC~~~C~~~F 328 (595)
.+.||+|+..+. .+.+ +.+.|. .||+.+
T Consensus 19 ~k~CP~CG~~~fm~~~~-~R~~C~-kCG~t~ 47 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHG-DRWACG-KCGYTE 47 (50)
T ss_dssp SEECSSSCSSCEEEECS-SEEECS-SSCCEE
T ss_pred cccCCCCCCceEEecCC-CeEECC-CCCCEE
Confidence 378999987543 2222 667887 787643
No 143
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.38 E-value=1.9 Score=31.51 Aligned_cols=32 Identities=22% Similarity=0.770 Sum_probs=24.6
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~ 338 (595)
-.||-|...+.. .+. . .|||.||..|+..|-.
T Consensus 16 ~~C~IC~~~~~~-----p~~-~-~CgH~fC~~Ci~~~~~ 47 (58)
T 2ecj_A 16 ASCSVCLEYLKE-----PVI-I-ECGHNFCKACITRWWE 47 (58)
T ss_dssp CBCSSSCCBCSS-----CCC-C-SSCCCCCHHHHHHHTT
T ss_pred CCCccCCcccCc-----cEe-C-CCCCccCHHHHHHHHH
Confidence 579999887763 233 3 4999999999999843
No 144
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=62.35 E-value=2 Score=32.73 Aligned_cols=36 Identities=25% Similarity=0.628 Sum_probs=25.8
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccCC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~H 339 (595)
..||-|...+..... +... .|+|.||+.|+..|-..
T Consensus 15 ~~C~IC~~~~~~~~~---~~~~-~C~H~fc~~Ci~~~~~~ 50 (69)
T 2kiz_A 15 EKCTICLSILEEGED---VRRL-PCMHLFHQVCVDQWLIT 50 (69)
T ss_dssp CSBTTTTBCCCSSSC---EEEC-TTSCEEEHHHHHHHHHH
T ss_pred CCCeeCCccccCCCc---EEEe-CCCCHHHHHHHHHHHHc
Confidence 679999877753221 3334 59999999999999644
No 145
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.32 E-value=3.5 Score=30.87 Aligned_cols=27 Identities=26% Similarity=0.664 Sum_probs=24.9
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccc
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLG 334 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~ 334 (595)
..|+.++.+++ ++|. .|+...|+.|..
T Consensus 15 ~~C~~H~e~L~-------lfC~-~d~~~iC~~C~~ 41 (59)
T 2yrg_A 15 DHCARHGEKLL-------LFCQ-EDGKVICWLCER 41 (59)
T ss_dssp SBCTTTCCBCC-------EEET-TTCSEECHHHHT
T ss_pred ccChhhCceee-------eecC-CCCcEEecccCC
Confidence 67999999999 9999 899999999975
No 146
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=62.28 E-value=9.3 Score=27.07 Aligned_cols=26 Identities=27% Similarity=0.841 Sum_probs=23.0
Q ss_pred CccccC--CCCcccCCcccccccccCCC
Q 007642 570 SHWYCD--QCTYANVNSATACAMCQHSR 595 (595)
Q Consensus 570 ~~~~~~--~c~~~~~~~~~~c~~c~~~~ 595 (595)
+-|.|. .|.+.|-..-..|-.|..+|
T Consensus 13 GDW~C~~~~C~~~Nfa~R~~C~~C~~pr 40 (45)
T 1n0z_A 13 GDWICPDKKCGNVNFARRTSCDRCGREK 40 (45)
T ss_dssp SSCBCSSTTTCCBCCSSCSBCSSSCCBC
T ss_pred CCcCCCCCCCCCEEccccccccccCCcC
Confidence 349999 89999999999999998765
No 147
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=62.27 E-value=4.2 Score=31.20 Aligned_cols=33 Identities=30% Similarity=0.656 Sum_probs=25.7
Q ss_pred CCccccccccccccCCCceecCC-CCcccHhHHHHHH
Q 007642 139 GEEMTCGICFENYPSDRLLAAAC-GHPFCSSCWTGYI 174 (595)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~C-gH~fC~~C~~~yi 174 (595)
.+..-|.||.++ -.+.-+.| |-.||..||+..-
T Consensus 6 ee~pWC~ICneD---AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNED---ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSC---CCEEETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCC---CeEEecCCCCceehHHHHHHHc
Confidence 345679999886 33566789 8899999999875
No 148
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=61.93 E-value=1.6 Score=47.78 Aligned_cols=22 Identities=36% Similarity=0.866 Sum_probs=0.0
Q ss_pred cccCCCCcccCCcccccccccC
Q 007642 572 WYCDQCTYANVNSATACAMCQH 593 (595)
Q Consensus 572 ~~~~~c~~~~~~~~~~c~~c~~ 593 (595)
-.|++|||.|-.+-..|.||.-
T Consensus 181 ~~CP~CTF~NHPsl~~CEiCg~ 202 (566)
T 1w7p_D 181 NICPACTFANHPQIGNCEICGH 202 (566)
T ss_dssp ----------------------
T ss_pred CCCCcccccCChhhhcccccCC
Confidence 5799999999999999999953
No 149
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=61.56 E-value=7.7 Score=38.48 Aligned_cols=43 Identities=12% Similarity=0.332 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHHhhhcHH
Q 007642 78 RQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADEE 120 (595)
Q Consensus 78 ~~~~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~~~~ 120 (595)
.+++.|.+...+.+.++..|...|..++||.+..++.||.++.
T Consensus 14 ~~~~~i~qF~~iTg~~~~~A~~~L~~~~WdLe~Al~~ff~~~~ 56 (270)
T 3bq3_A 14 PEQEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDKEI 56 (270)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcc
Confidence 4667899999999999999999999999999999999997654
No 150
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=61.50 E-value=3.5 Score=35.15 Aligned_cols=33 Identities=21% Similarity=0.545 Sum_probs=24.7
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~ 338 (595)
-.||-|...+. +.++-. .|||.||+.|+..|..
T Consensus 23 ~~C~IC~~~~~-----~pv~~~-~CgH~fC~~Ci~~~~~ 55 (117)
T 1jm7_B 23 LRCSRCTNILR-----EPVCLG-GCEHIFCSNCVSDCIG 55 (117)
T ss_dssp TSCSSSCSCCS-----SCBCCC-SSSCCBCTTTGGGGTT
T ss_pred CCCCCCChHhh-----CccEeC-CCCCHHHHHHHHHHhc
Confidence 68999988775 234442 3999999999988854
No 151
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=61.47 E-value=1.7 Score=33.23 Aligned_cols=37 Identities=27% Similarity=0.562 Sum_probs=26.3
Q ss_pred ccCCCCCcceeec--CCCCcccccCCCcceeeecccccccC
Q 007642 300 KPCPRCKRPIEKN--QGCMHMTCTPPCKFEFCWLCLGQWSD 338 (595)
Q Consensus 300 K~CPkC~~~IEK~--~GCnhmtC~~~C~~~FCw~C~~~~~~ 338 (595)
..||-|...+... .| ..+.-. .|||.||+.|+..|-.
T Consensus 11 ~~C~IC~~~~~~~~~~~-~~~~~~-~CgH~fc~~Ci~~~~~ 49 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNG-RLIVST-ECGHVFCSQCLRDSLK 49 (71)
T ss_dssp CBCTTTCCBHHHHHTTT-CCEEEC-TTSCEEEHHHHHHHHH
T ss_pred CCCcccChhhhcccccc-CCeEeC-CCCChHhHHHHHHHHH
Confidence 6799998877643 22 223344 5999999999999854
No 152
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.97 E-value=2.2 Score=32.88 Aligned_cols=33 Identities=30% Similarity=0.677 Sum_probs=24.7
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccCC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~H 339 (595)
..||-|...+.. .++- .|+|.||+.|+..|-..
T Consensus 16 ~~C~IC~~~~~~-----~~~~--~CgH~fC~~Ci~~~~~~ 48 (71)
T 2d8t_A 16 PECAICLQTCVH-----PVSL--PCKHVFCYLCVKGASWL 48 (71)
T ss_dssp CBCSSSSSBCSS-----EEEE--TTTEEEEHHHHHHCTTC
T ss_pred CCCccCCcccCC-----CEEc--cCCCHHHHHHHHHHHHC
Confidence 579999877642 2333 49999999999988654
No 153
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=60.94 E-value=2.4 Score=33.10 Aligned_cols=26 Identities=31% Similarity=0.696 Sum_probs=21.5
Q ss_pred cCCCc-ccccCCcccCCCCCchhHHHHHHhhhHhHHhHHHHHhcCccCCCCCcceee
Q 007642 256 RCSYS-FCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEK 311 (595)
Q Consensus 256 ~C~~~-fC~~C~~~~H~p~~C~~~~~~~~k~~~~~e~~~wi~~ntK~CPkC~~~IEK 311 (595)
.|||. ||..|...+ +.||.|+.+|.+
T Consensus 41 pCgH~~~C~~C~~~~------------------------------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 41 PCGHLVTCKQCAEAV------------------------------DKCPMCYTVITF 67 (74)
T ss_dssp TTCCBCCCHHHHTTC------------------------------SBCTTTCCBCSE
T ss_pred CCCChhHHHHhhhcC------------------------------ccCCCcCcCccC
Confidence 89999 999996432 689999998874
No 154
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=60.42 E-value=2.4 Score=32.07 Aligned_cols=33 Identities=27% Similarity=0.884 Sum_probs=24.0
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~ 338 (595)
..||-|...+.. ...-. +|||.||+.|...|..
T Consensus 6 ~~C~IC~~~~~~-----~~~~~-~C~H~fc~~Ci~~~~~ 38 (68)
T 1chc_A 6 ERCPICLEDPSN-----YSMAL-PCLHAFCYVCITRWIR 38 (68)
T ss_dssp CCCSSCCSCCCS-----CEEET-TTTEEESTTHHHHHHH
T ss_pred CCCeeCCccccC-----CcEec-CCCCeeHHHHHHHHHh
Confidence 689999887752 12334 5999999999988854
No 155
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=59.66 E-value=3.8 Score=30.89 Aligned_cols=27 Identities=22% Similarity=0.621 Sum_probs=24.6
Q ss_pred ccCCCC-CcceeecCCCCcccccCCCcceeeecccc
Q 007642 300 KPCPRC-KRPIEKNQGCMHMTCTPPCKFEFCWLCLG 334 (595)
Q Consensus 300 K~CPkC-~~~IEK~~GCnhmtC~~~C~~~FCw~C~~ 334 (595)
..||.+ +.+++ ++|. .|+...|+.|..
T Consensus 9 ~~C~~H~~e~l~-------lfC~-~d~~~iC~~C~~ 36 (64)
T 2d8u_A 9 PMCKEHEDEKIN-------IYCL-TCEVPTCSMCKV 36 (64)
T ss_dssp CCCSSCTTCCCC-------SEES-SSCCCCCSHHHH
T ss_pred CcCcCcCCCccc-------eEcC-cCCceeCccccC
Confidence 579999 89999 9999 899999999964
No 156
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=59.38 E-value=3.7 Score=29.32 Aligned_cols=31 Identities=23% Similarity=0.497 Sum_probs=26.8
Q ss_pred ccCCCC-CcceeecCCCCcccccCCCcceeeecccccccCCC
Q 007642 300 KPCPRC-KRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (595)
Q Consensus 300 K~CPkC-~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~H~ 340 (595)
..||.+ +.++. ++|. .|+..+|+.|.. ..|.
T Consensus 7 ~~C~~H~~e~l~-------lfC~-~~~~~iC~~C~~--~~H~ 38 (50)
T 2yvr_A 7 VYCNVHKHEPLV-------LFCE-SCDTLTCRDCQL--NAHK 38 (50)
T ss_dssp CBCSSSTTCBCC-------EEET-TTTEEECHHHHH--TTTT
T ss_pred CcCcCCCCCCEE-------EEeC-CCCEEEecccCC--CcCC
Confidence 679999 89999 9999 899999999976 3564
No 157
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.35 E-value=2.4 Score=33.47 Aligned_cols=33 Identities=21% Similarity=0.500 Sum_probs=25.0
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccCC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~H 339 (595)
-.||-|...+.. .++ . .|||.||+.|...|...
T Consensus 16 ~~C~IC~~~~~~-----p~~-~-~CgH~fC~~Ci~~~~~~ 48 (81)
T 2csy_A 16 FRCFICRQAFQN-----PVV-T-KCRHYFCESCALEHFRA 48 (81)
T ss_dssp SBCSSSCSBCCS-----EEE-C-TTSCEEEHHHHHHHHHH
T ss_pred CCCcCCCchhcC-----eeE-c-cCCCHhHHHHHHHHHHC
Confidence 579999888752 344 3 59999999999988643
No 158
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=57.57 E-value=8.9 Score=40.05 Aligned_cols=32 Identities=25% Similarity=0.711 Sum_probs=23.0
Q ss_pred ecCCCcccccCCcccCCCCCchhHHHHHHhhhHhHHhHHHHHhcCccCCCCCcceee
Q 007642 255 CRCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEK 311 (595)
Q Consensus 255 C~C~~~fC~~C~~~~H~p~~C~~~~~~~~k~~~~~e~~~wi~~ntK~CPkC~~~IEK 311 (595)
-.|||.||..|... |+. .....||.|+.+|..
T Consensus 348 lpCGH~FC~~Ci~~------------wl~-------------~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 348 EPCGHLMCTSCLTS------------WQE-------------SEGQGCPFCRCEIKG 379 (389)
T ss_dssp ETTCCEECHHHHHH------------HHH-------------HTCSBCTTTCCBCCE
T ss_pred eCCCChhhHHHHHH------------HHh-------------cCCCCCCCCCCccCC
Confidence 38999999888632 322 123789999998874
No 159
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=57.48 E-value=2.7 Score=37.88 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=25.5
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccCC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~H 339 (595)
-.||-|...+. +.++ . .|||.||+.|+..|-.+
T Consensus 79 ~~C~IC~~~~~-----~pv~-~-~CgH~fC~~Ci~~~~~~ 111 (150)
T 1z6u_A 79 FMCVCCQELVY-----QPVT-T-ECFHNVCKDCLQRSFKA 111 (150)
T ss_dssp TBCTTTSSBCS-----SEEE-C-TTSCEEEHHHHHHHHHT
T ss_pred CEeecCChhhc-----CCEE-c-CCCCchhHHHHHHHHHh
Confidence 57999988775 2344 3 49999999999988654
No 160
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.42 E-value=2.9 Score=32.87 Aligned_cols=32 Identities=25% Similarity=0.665 Sum_probs=23.8
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~ 338 (595)
-.||-|...+.. .++- .|||.||..|+..|-.
T Consensus 20 ~~C~IC~~~~~~-----p~~~--~CgH~fC~~Ci~~~~~ 51 (85)
T 2ecv_A 20 VTCPICLELLTQ-----PLSL--DCGHSFCQACLTANHK 51 (85)
T ss_dssp CCCTTTCSCCSS-----CBCC--SSSCCBCTTHHHHHHH
T ss_pred CCCCCCCcccCC-----ceeC--CCCCHHHHHHHHHHHH
Confidence 579999887753 2333 4999999999988743
No 161
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=56.72 E-value=2.8 Score=37.33 Aligned_cols=32 Identities=19% Similarity=0.633 Sum_probs=25.4
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~ 338 (595)
-.||-|...+. +.++. .|||.||..|+..|-.
T Consensus 32 ~~C~IC~~~~~-----~pv~~--~CgH~FC~~Ci~~~~~ 63 (141)
T 3knv_A 32 YLCSACRNVLR-----RPFQA--QCGHRYCSFCLASILS 63 (141)
T ss_dssp GBCTTTCSBCS-----SEEEC--TTSCEEEHHHHHHHGG
T ss_pred cCCCCCChhhc-----CcEEC--CCCCccCHHHHHHHHh
Confidence 57999998775 23554 4999999999998864
No 162
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.80 E-value=2.9 Score=31.91 Aligned_cols=31 Identities=32% Similarity=0.896 Sum_probs=24.2
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~ 338 (595)
..||-|...+.. +. . .|+|.||+.|+..|..
T Consensus 16 ~~C~IC~~~~~~------~~-~-~CgH~fc~~Ci~~~~~ 46 (70)
T 2ecn_A 16 EECCICMDGRAD------LI-L-PCAHSFCQKCIDKWSD 46 (70)
T ss_dssp CCCSSSCCSCCS------EE-E-TTTEEECHHHHHHSSC
T ss_pred CCCeeCCcCccC------cc-c-CCCCcccHHHHHHHHH
Confidence 679999887653 33 3 5999999999998865
No 163
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=55.34 E-value=2.2 Score=34.53 Aligned_cols=32 Identities=19% Similarity=0.355 Sum_probs=23.8
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeeccccccc
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWS 337 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~ 337 (595)
-.||-|...+. +.++-. .|||.||..|+..|-
T Consensus 14 ~~C~IC~~~~~-----~p~~~~-~CgH~fC~~Ci~~~~ 45 (92)
T 3ztg_A 14 LLCLICKDIMT-----DAVVIP-CCGNSYCDECIRTAL 45 (92)
T ss_dssp TEETTTTEECS-----SCEECT-TTCCEECHHHHHHHH
T ss_pred CCCCCCChhhc-----CceECC-CCCCHHHHHHHHHHH
Confidence 57999987665 234432 399999999998874
No 164
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=55.14 E-value=2.7 Score=35.20 Aligned_cols=34 Identities=29% Similarity=0.715 Sum_probs=21.1
Q ss_pred cCCCCCccee---ecCCCCcccccCCCc-------ceeeeccccc
Q 007642 301 PCPRCKRPIE---KNQGCMHMTCTPPCK-------FEFCWLCLGQ 335 (595)
Q Consensus 301 ~CPkC~~~IE---K~~GCnhmtC~~~C~-------~~FCw~C~~~ 335 (595)
-||+|..||- +.-=|+|++|. .|- ...|.+|..+
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCy-dCa~~~~~~~~k~Cp~C~~~ 46 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCY-DCAILHEKKGDKMCPGCSDP 46 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEH-HHHHHHHHTTCCBCTTTCCB
T ss_pred ecCccCCCeEEEeeeccccccHHH-HHHHHHHhccCCCCcCcCCe
Confidence 5999999997 33346666665 454 2356666554
No 165
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=54.86 E-value=2.4 Score=31.46 Aligned_cols=39 Identities=23% Similarity=0.455 Sum_probs=25.5
Q ss_pred ccCCCCCcceeecC-CCCcccccCCCcceeeecccccccCC
Q 007642 300 KPCPRCKRPIEKNQ-GCMHMTCTPPCKFEFCWLCLGQWSDH 339 (595)
Q Consensus 300 K~CPkC~~~IEK~~-GCnhmtC~~~C~~~FCw~C~~~~~~H 339 (595)
..||-|...+.... +=..+.-. .|||.||..|+..|-..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~ 43 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN 43 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHH
T ss_pred CCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHc
Confidence 46888887765431 11222334 59999999999988543
No 166
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=54.58 E-value=26 Score=26.04 Aligned_cols=41 Identities=12% Similarity=0.130 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHHhhh
Q 007642 77 QRQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFA 117 (595)
Q Consensus 77 ~~~~~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~ 117 (595)
..+.+.|..++...++...-+...|...+||.++.+..|..
T Consensus 4 ~~q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 4 PVQLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 46778999999999999999999999999999998877643
No 167
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=54.53 E-value=21 Score=24.60 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHHhhh
Q 007642 81 EDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFA 117 (595)
Q Consensus 81 ~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~ 117 (595)
+.|.++.+ +|.++..|...|+..+||++...+-.+.
T Consensus 6 ~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 6 LAVEELSG-MGFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHT-TTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 45667766 5899999999999999999988775543
No 168
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.35 E-value=2.7 Score=31.73 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=25.4
Q ss_pred ccCCCCCcceeecCC-CCcccccCCCcceeeecccccccC
Q 007642 300 KPCPRCKRPIEKNQG-CMHMTCTPPCKFEFCWLCLGQWSD 338 (595)
Q Consensus 300 K~CPkC~~~IEK~~G-CnhmtC~~~C~~~FCw~C~~~~~~ 338 (595)
..||-|...+..... -..+.-. .|||.||..|+..|-.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~ 54 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLK 54 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHH
T ss_pred CCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHH
Confidence 578888887764311 1112333 5999999999998854
No 169
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=54.29 E-value=10 Score=27.42 Aligned_cols=26 Identities=31% Similarity=0.682 Sum_probs=23.0
Q ss_pred CccccCCCCcccCCcccccccccCCC
Q 007642 570 SHWYCDQCTYANVNSATACAMCQHSR 595 (595)
Q Consensus 570 ~~~~~~~c~~~~~~~~~~c~~c~~~~ 595 (595)
.+|.|..|.--|+.-...|.-|..-|
T Consensus 10 D~WkC~~C~k~N~Pl~ryC~rCwaLR 35 (53)
T 2cr8_A 10 DEWQCTECKKFNSPSKRYCFRCWALR 35 (53)
T ss_dssp CCEECSSSCCEECSSCCBCTTTCCBC
T ss_pred ceeecccccccCCCccchhHHHHHhh
Confidence 56999999999999999999997543
No 170
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=53.51 E-value=4.6 Score=34.03 Aligned_cols=38 Identities=26% Similarity=0.533 Sum_probs=23.8
Q ss_pred cCCCcccccCCcccCCCCCchhHHHHHHhhhHhHHhHHHHHhcCccCCCCCcceeecCC
Q 007642 256 RCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKNQG 314 (595)
Q Consensus 256 ~C~~~fC~~C~~~~H~p~~C~~~~~~~~k~~~~~e~~~wi~~ntK~CPkC~~~IEK~~G 314 (595)
.|+|.||..|... |+..... .....||-|+..+.+..|
T Consensus 60 ~C~H~Fh~~Ci~~------------wl~~~~~---------~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 60 KCSHAFHLLCLLA------------MYCNGNK---------DGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp SSCCEECHHHHHH------------HHHHTCC---------SSCCBCTTTCCBSSSCSS
T ss_pred CCCCcccHHHHHH------------HHHcccC---------CCCCcCCCCCCccCCCCC
Confidence 7999999988743 3311000 112689999998875433
No 171
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=53.28 E-value=26 Score=25.02 Aligned_cols=37 Identities=14% Similarity=0.094 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHHhhh
Q 007642 80 EEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFA 117 (595)
Q Consensus 80 ~~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~ 117 (595)
.+.|.++.+. |.++..|...|+..+||++...+..+.
T Consensus 9 ~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3455566544 899999999999999999998876654
No 172
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.23 E-value=4.8 Score=29.85 Aligned_cols=27 Identities=19% Similarity=0.587 Sum_probs=24.9
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccc
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLG 334 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~ 334 (595)
..|+.++.+++ ++|. .|+...|+.|..
T Consensus 19 ~~C~~H~e~L~-------lfC~-~d~~~iC~~C~~ 45 (57)
T 2egm_A 19 GICPKHQEALK-------LFCE-VDEEAICVVCRE 45 (57)
T ss_dssp SBCTTTCCBCC-------EEET-TTTEEECHHHHH
T ss_pred CcChhhCceee-------EEcC-CCCcEEecccCC
Confidence 67999999999 9999 899999999975
No 173
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=52.10 E-value=33 Score=25.66 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHHhh
Q 007642 78 RQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWF 116 (595)
Q Consensus 78 ~~~~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~ 116 (595)
.+.+.|..++...++...-+...|...+||.++.+..|.
T Consensus 6 ~q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~ 44 (59)
T 1oai_A 6 EQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFT 44 (59)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 677889999999999999999999999999999887764
No 174
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.91 E-value=3.1 Score=32.09 Aligned_cols=36 Identities=28% Similarity=0.696 Sum_probs=25.1
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccCC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~H 339 (595)
..||-|...+...... +.. .|+|.||+.|+..|-..
T Consensus 16 ~~C~IC~~~~~~~~~~--~~~--~C~H~f~~~Ci~~~~~~ 51 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDEL--GIC--PCKHAFHRKCLIKWLEV 51 (74)
T ss_dssp CBCSSSCCBCCSSSCE--EEE--TTTEEEEHHHHHHHHHH
T ss_pred CCCcCCCcccCCCCcE--EEc--CCCCEecHHHHHHHHHc
Confidence 5799998877643221 222 39999999999998643
No 175
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=51.15 E-value=3.9 Score=34.90 Aligned_cols=32 Identities=25% Similarity=0.675 Sum_probs=25.0
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~ 338 (595)
-.||-|...+.. .++. .|||.||+.|...|-.
T Consensus 19 ~~C~IC~~~~~~-----p~~~--~CgH~fC~~Ci~~~~~ 50 (118)
T 3hct_A 19 YECPICLMALRE-----AVQT--PCGHRFCKACIIKSIR 50 (118)
T ss_dssp GBCTTTCSBCSS-----EEEC--TTSCEEEHHHHHHHHH
T ss_pred CCCCcCChhhcC-----eEEC--CcCChhhHHHHHHHHh
Confidence 589999987762 2454 4999999999998854
No 176
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=50.72 E-value=22 Score=27.89 Aligned_cols=35 Identities=6% Similarity=0.169 Sum_probs=28.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHHhhh
Q 007642 82 DITRISTVLSISKVAASILLRFYNWSVSKVHDEWFA 117 (595)
Q Consensus 82 ~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~ 117 (595)
.|.++.+ ++.+...|...|+..+||++...+.++.
T Consensus 32 ~I~~L~e-MGF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 32 QIQKLVA-MGFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp HHHHHHT-TTCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4455555 5899999999999999999999887664
No 177
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=50.00 E-value=8.2 Score=29.52 Aligned_cols=28 Identities=21% Similarity=0.675 Sum_probs=22.0
Q ss_pred CccCCCCCcceeecCCCCcccccCCCcceeeecc
Q 007642 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLC 332 (595)
Q Consensus 299 tK~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C 332 (595)
+.+|..|++.+... -+.|+ |+..||-.-
T Consensus 15 ~~rC~~C~kkvgl~----~f~Cr--Cg~~FC~~H 42 (64)
T 1wfh_A 15 PNRCTVCRKRVGLT----GFMCR--CGTTFCGSH 42 (64)
T ss_dssp CCCCTTTCCCCCTT----CEECS--SSCEECTTT
T ss_pred CCcChhhCCccCcc----CEEee--cCCEecccc
Confidence 37899999988744 26797 999999754
No 178
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=49.98 E-value=8.5 Score=29.84 Aligned_cols=28 Identities=25% Similarity=0.611 Sum_probs=20.1
Q ss_pred ccCCCCCcceeecCCCCcccccCCCccee
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEF 328 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~F 328 (595)
-.||.|+.+++-..+=..++|. .||..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~-~cg~~Y 36 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICK-GDRLAF 36 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEET-TTTEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcC-CCCcEe
Confidence 5799999999876554557776 565544
No 179
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=49.53 E-value=4.3 Score=34.40 Aligned_cols=33 Identities=21% Similarity=0.604 Sum_probs=25.9
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccCC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~H 339 (595)
-.||-|...+.. .++- .|||.||+.|+..|-..
T Consensus 24 ~~C~IC~~~~~~-----p~~~--~CgH~fC~~Ci~~~~~~ 56 (116)
T 1rmd_A 24 ISCQICEHILAD-----PVET--SCKHLFCRICILRCLKV 56 (116)
T ss_dssp TBCTTTCSBCSS-----EEEC--TTSCEEEHHHHHHHHHH
T ss_pred CCCCCCCcHhcC-----cEEc--CCCCcccHHHHHHHHhH
Confidence 689999988762 3453 49999999999988654
No 180
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=49.38 E-value=9.1 Score=29.85 Aligned_cols=28 Identities=25% Similarity=0.628 Sum_probs=20.8
Q ss_pred ccCCCCCcceeecCCCCcccccCCCccee
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEF 328 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~F 328 (595)
-.||.|+.+++-+.+=..++|. .||..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~-~cg~~Y 36 (70)
T 2js4_A 9 LVCPVCKGRLEFQRAQAELVCN-ADRLAF 36 (70)
T ss_dssp CBCTTTCCBEEEETTTTEEEET-TTTEEE
T ss_pred eECCCCCCcCEEeCCCCEEEcC-CCCcee
Confidence 5799999999876554567787 566555
No 181
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=47.99 E-value=12 Score=36.33 Aligned_cols=14 Identities=0% Similarity=-0.078 Sum_probs=10.8
Q ss_pred eeecCCCcccccCC
Q 007642 253 VTCRCSYSFCWNCT 266 (595)
Q Consensus 253 v~C~C~~~fC~~C~ 266 (595)
|+-.||++||..|.
T Consensus 222 v~~~~gh~f~~~~i 235 (281)
T 2c2l_A 222 CITPSGITYDRKDI 235 (281)
T ss_dssp EECSSCCEEETTHH
T ss_pred eECCCCCEECHHHH
Confidence 34479999998775
No 182
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=47.96 E-value=10 Score=29.48 Aligned_cols=28 Identities=18% Similarity=0.515 Sum_probs=20.1
Q ss_pred ccCCCCCcceeecCCCCcccccCCCccee
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEF 328 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~F 328 (595)
-.||.|+.+++-..+=..++|. .||..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~-~cg~~Y 36 (69)
T 2pk7_A 9 LACPICKGPLKLSADKTELISK-GAGLAY 36 (69)
T ss_dssp CCCTTTCCCCEECTTSSEEEET-TTTEEE
T ss_pred eeCCCCCCcCeEeCCCCEEEcC-CCCcEe
Confidence 5899999999866554557776 565544
No 183
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=47.82 E-value=8.2 Score=30.37 Aligned_cols=27 Identities=26% Similarity=0.698 Sum_probs=21.9
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecc
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLC 332 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C 332 (595)
.+|..|++.+...+ +.|+ |+..||-.=
T Consensus 26 nRC~~CrKkvgL~g----f~Cr--Cg~~FCs~H 52 (74)
T 1wfl_A 26 NRCFMCRKKVGLTG----FDCR--CGNLFCGLH 52 (74)
T ss_dssp TBCSSSCCBCGGGC----EECT--TSCEECSSS
T ss_pred CcChhhCCcccccC----eecC--CCCEechhc
Confidence 58999999888552 7898 999999754
No 184
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=47.05 E-value=9 Score=29.33 Aligned_cols=28 Identities=21% Similarity=0.615 Sum_probs=21.6
Q ss_pred CccCCCCCcceeecCCCCcccccCCCcceeeecc
Q 007642 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLC 332 (595)
Q Consensus 299 tK~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C 332 (595)
..+|..|++.+... -+.|+ |+..||-.-
T Consensus 15 ~~rC~~C~kkvgl~----~f~Cr--Cg~~FC~~H 42 (64)
T 1wg2_A 15 NNRCFSCNKKVGVM----GFKCK--CGSTFCGSH 42 (64)
T ss_dssp SCSCTTTCCCCTTS----CEECT--TSCEECSSS
T ss_pred CCcChhhCCccccc----CeEee--cCCEecccC
Confidence 36899999987743 26797 999999754
No 185
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=46.00 E-value=13 Score=31.77 Aligned_cols=29 Identities=14% Similarity=0.522 Sum_probs=23.2
Q ss_pred CccCCCCCcceeec----CCCCcccccCCCccee
Q 007642 299 SKPCPRCKRPIEKN----QGCMHMTCTPPCKFEF 328 (595)
Q Consensus 299 tK~CPkC~~~IEK~----~GCnhmtC~~~C~~~F 328 (595)
.+-||.|+.++.-. .|.+.+.|+ .|++.+
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~-~C~y~~ 36 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACR-NCDYSE 36 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECS-SSCCEE
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECC-CCCCeE
Confidence 47899999887533 368899999 899876
No 186
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=45.90 E-value=3.2 Score=33.75 Aligned_cols=36 Identities=28% Similarity=0.542 Sum_probs=25.1
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccCC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~H 339 (595)
..||-|...+..... +.-. .|+|.||+.|+..|-..
T Consensus 41 ~~C~IC~~~~~~~~~---~~~l-~C~H~Fh~~Ci~~wl~~ 76 (91)
T 2l0b_A 41 MCCPICCSEYVKGDV---ATEL-PCHHYFHKPCVSIWLQK 76 (91)
T ss_dssp SEETTTTEECCTTCE---EEEE-TTTEEEEHHHHHHHHTT
T ss_pred CCCcccChhhcCCCc---EEec-CCCChHHHHHHHHHHHc
Confidence 569999876653321 2223 49999999999999643
No 187
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.66 E-value=36 Score=25.58 Aligned_cols=37 Identities=27% Similarity=0.216 Sum_probs=29.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHHhhhcH
Q 007642 82 DITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADE 119 (595)
Q Consensus 82 ~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 119 (595)
.|.++.+ ++.+...|...|+..+||++...+-++...
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~t~~nve~A~e~L~~~~ 48 (63)
T 2dak_A 12 CVTTIVS-MGFSRDQALKALRATNNSLERAVDWIFSHI 48 (63)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTSCSHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4555555 599999999999999999999888776543
No 188
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=44.48 E-value=11 Score=33.16 Aligned_cols=30 Identities=13% Similarity=0.451 Sum_probs=23.0
Q ss_pred cCccCCCCCcceeec----CCCCcccccCCCccee
Q 007642 298 NSKPCPRCKRPIEKN----QGCMHMTCTPPCKFEF 328 (595)
Q Consensus 298 ntK~CPkC~~~IEK~----~GCnhmtC~~~C~~~F 328 (595)
..+-||.|+.++--. .|.+.+.|+ .|++.+
T Consensus 23 ~~~FCPeCgNmL~pked~~~~~l~~~Cr-tCgY~~ 56 (133)
T 3qt1_I 23 TFRFCRDCNNMLYPREDKENNRLLFECR-TCSYVE 56 (133)
T ss_dssp CCCBCTTTCCBCBCCBCTTTCCBCCBCS-SSCCBC
T ss_pred CCeeCCCCCCEeeECccCCCceeEEECC-CCCCcE
Confidence 348999999887422 368899999 898865
No 189
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=42.52 E-value=13 Score=28.69 Aligned_cols=28 Identities=14% Similarity=0.326 Sum_probs=20.7
Q ss_pred ccCCCCCcceeecCCCCcccccCCCccee
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEF 328 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~F 328 (595)
-.||.|+.+++-...=+.+.|. .|+..|
T Consensus 11 L~CP~ck~~L~~~~~~g~LvC~-~c~~~Y 38 (67)
T 2jny_A 11 LACPKDKGPLRYLESEQLLVNE-RLNLAY 38 (67)
T ss_dssp CBCTTTCCBCEEETTTTEEEET-TTTEEE
T ss_pred hCCCCCCCcCeEeCCCCEEEcC-CCCccc
Confidence 5899999999876554557787 566555
No 190
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=42.42 E-value=9.4 Score=30.34 Aligned_cols=27 Identities=22% Similarity=0.424 Sum_probs=24.5
Q ss_pred ccCCCC-CcceeecCCCCcccccCCCcceeeecccc
Q 007642 300 KPCPRC-KRPIEKNQGCMHMTCTPPCKFEFCWLCLG 334 (595)
Q Consensus 300 K~CPkC-~~~IEK~~GCnhmtC~~~C~~~FCw~C~~ 334 (595)
..||.+ +.+++ ++|. .|+...|+.|..
T Consensus 19 ~~C~~H~~e~l~-------lfC~-~d~~~iC~~C~~ 46 (84)
T 2dja_A 19 ITCLDHENEKVN-------MYCV-SDDQLICALCKL 46 (84)
T ss_dssp CCCSSCSSSCCC-------EEET-TTTEEECHHHHH
T ss_pred CcCcCcCCcccc-------EEcC-CCCceEcccCcC
Confidence 579999 68999 9999 899999999975
No 191
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=42.28 E-value=37 Score=27.34 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=28.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHcCCChhhhHHHhhhcH
Q 007642 83 ITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADE 119 (595)
Q Consensus 83 i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 119 (595)
|.++.+ +|.+...|+..|+..+||+++..+..|.+.
T Consensus 33 I~~Lv~-MGF~~~~A~~AL~~t~gdve~A~e~L~sh~ 68 (83)
T 1veg_A 33 INQLVY-MGFDTVVAEAALRVFGGNVQLAAQTLAHHG 68 (83)
T ss_dssp HHHHHH-HSCCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 334433 489999999999999999999988777643
No 192
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.14 E-value=8 Score=30.61 Aligned_cols=18 Identities=22% Similarity=0.757 Sum_probs=14.9
Q ss_pred CCcceeeecccccccCCC
Q 007642 323 PCKFEFCWLCLGQWSDHG 340 (595)
Q Consensus 323 ~C~~~FCw~C~~~~~~H~ 340 (595)
.|+|.|+..|+..|-..+
T Consensus 47 ~C~H~FH~~Ci~~Wl~~~ 64 (81)
T 2ecl_A 47 ECNHSFHNCCMSLWVKQN 64 (81)
T ss_dssp TTSCEEEHHHHHHHTTTC
T ss_pred CCCCccChHHHHHHHHhC
Confidence 499999999999996543
No 193
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=40.73 E-value=7.1 Score=35.50 Aligned_cols=32 Identities=22% Similarity=0.597 Sum_probs=25.8
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~ 338 (595)
-.||-|..++.. .+++. ||+.||..|...|-.
T Consensus 19 ~~C~IC~~~~~~-----pv~~~--CgH~fC~~Ci~~~~~ 50 (170)
T 3hcs_A 19 YECPICLMALRE-----AVQTP--CGHRFCKACIIKSIR 50 (170)
T ss_dssp GBCTTTCSBCSS-----EEECT--TSCEEEHHHHHHHHH
T ss_pred CCCCCCChhhcC-----cEECC--CCCHHHHHHHHHHHH
Confidence 579999988763 36664 999999999998853
No 194
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=39.01 E-value=13 Score=26.46 Aligned_cols=28 Identities=25% Similarity=0.571 Sum_probs=24.0
Q ss_pred CCCccccCCCCcccCCcccccccccCCC
Q 007642 568 DSSHWYCDQCTYANVNSATACAMCQHSR 595 (595)
Q Consensus 568 ~~~~~~~~~c~~~~~~~~~~c~~c~~~~ 595 (595)
....|.|..|.--|+.....|.-|..-|
T Consensus 10 ~~D~WkC~~C~~~N~Pl~r~C~rCw~LR 37 (46)
T 2c6a_A 10 LADYWKCTSCNEMNPPLPSHCNRCWALR 37 (46)
T ss_dssp GGGCEECTTTCCEECSSCSSCTTTCCCC
T ss_pred ccceEecccccccCCCccchhhHHHhhc
Confidence 3467999999999999999999997643
No 195
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=38.76 E-value=14 Score=29.87 Aligned_cols=29 Identities=24% Similarity=0.543 Sum_probs=22.0
Q ss_pred CccCCCCCcceeecCCCCcccccCCCcceeeecc
Q 007642 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLC 332 (595)
Q Consensus 299 tK~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C 332 (595)
..+|..|++.+-... -+.|+ |+..||-.=
T Consensus 25 ~~rC~~C~kkvgl~~---~f~Cr--Cg~~FC~~H 53 (85)
T 1wff_A 25 MKHCFLCGKKTGLAT---SFECR--CGNNFCASH 53 (85)
T ss_dssp CCBCSSSCCBCSSSS---CEECT--TCCEECTTT
T ss_pred CccchhhCCeecccC---CeEcC--CCCEecccC
Confidence 368999998776432 38898 999999754
No 196
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=38.46 E-value=1.7e+02 Score=31.47 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 007642 457 QFFEYLQGEAESGLERLHQCAEKELQIYLN 486 (595)
Q Consensus 457 ~~fe~~Q~~le~~~E~L~~~le~e~~~~~~ 486 (595)
..+.-||..|+.++.++ +.||.+|..-+.
T Consensus 131 snIrvLQsnLedq~~kI-QRLEvDIdiqir 159 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDM-KRLEVDIDIKIR 159 (562)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 55566677777776665 468888876553
No 197
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=36.50 E-value=52 Score=24.85 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHHhhh
Q 007642 81 EDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFA 117 (595)
Q Consensus 81 ~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~ 117 (595)
+.|.++.+ ++.+...|...|+..+||++...+-.+.
T Consensus 11 ~~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e~L~~ 46 (63)
T 1wji_A 11 KALKHITE-MGFSKEASRQALMDNGNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34555554 5899999999999999999988876654
No 198
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=36.42 E-value=15 Score=29.31 Aligned_cols=41 Identities=20% Similarity=0.643 Sum_probs=26.1
Q ss_pred HHHHHhc-CccCCCCCcceeecCCCCcccccCCCcceeeeccccc
Q 007642 292 MNWILAN-SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQ 335 (595)
Q Consensus 292 ~~wi~~n-tK~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~ 335 (595)
..|+... ...|+.|+...-- .--.-.|+ .||.-||..|...
T Consensus 11 ~~W~~d~~~~~C~~C~~~Fs~--~~RrHHCR-~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 11 HAWLKDDEATHCRQCEKEFSI--SRRKHHCR-NCGHIFCNTCSSN 52 (82)
T ss_dssp ----CCCCCCBCTTTCCBCBT--TBCCEECT-TTCCEECSGGGCE
T ss_pred CccccCccCCcccCcCCcccC--ccccccCC-CCCCEEChHHhCC
Confidence 4576543 4689999987641 11224688 8999999999764
No 199
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=36.25 E-value=14 Score=32.04 Aligned_cols=28 Identities=14% Similarity=0.510 Sum_probs=22.2
Q ss_pred ccCCCCCcceeec----CCCCcccccCCCccee
Q 007642 300 KPCPRCKRPIEKN----QGCMHMTCTPPCKFEF 328 (595)
Q Consensus 300 K~CPkC~~~IEK~----~GCnhmtC~~~C~~~F 328 (595)
+-||.|+.++.-. .+-+.+.|+ .|++.+
T Consensus 5 ~FCp~CgnlL~~~~~~~~~~~~~~C~-~C~y~~ 36 (122)
T 1twf_I 5 RFCRDCNNMLYPREDKENNRLLFECR-TCSYVE 36 (122)
T ss_dssp CBCSSSCCBCEEEEETTTTEEEEECS-SSSCEE
T ss_pred CcccccCccCcccccCcCCCCEEECC-cCCCee
Confidence 6899999877622 667889999 798866
No 200
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=36.04 E-value=13 Score=29.33 Aligned_cols=28 Identities=21% Similarity=0.664 Sum_probs=21.9
Q ss_pred CccCCCCCcceeecCCCCcccccCCCcceeeecc
Q 007642 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLC 332 (595)
Q Consensus 299 tK~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C 332 (595)
..+|..|++.+... -+.|+ |+..||-.=
T Consensus 25 ~~RC~~C~kkvgL~----~f~Cr--Cg~~FCs~H 52 (74)
T 1wfp_A 25 ATRCLSCNKKVGVT----GFKCR--CGSTFCGTH 52 (74)
T ss_dssp CCBCSSSCCBCTTT----CEECT--TSCEECTTT
T ss_pred CccchhhcCccccc----ceEec--cCCEecccc
Confidence 36899999887754 27897 999999653
No 201
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=35.90 E-value=49 Score=23.89 Aligned_cols=37 Identities=8% Similarity=0.150 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCC-CHHHHHHHHHHcCCChhhhHHHhhhc
Q 007642 81 EDITRISTVLSI-SKVAASILLRFYNWSVSKVHDEWFAD 118 (595)
Q Consensus 81 ~~i~~v~~vl~i-~~~~a~~LL~~~~W~~~~l~e~~~~~ 118 (595)
+.|.++.+ +|. +...+...|+..+||++..++..+.+
T Consensus 14 ~~l~~L~~-MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 14 QQLEQLSA-MGFLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp HHHHHHHH-TTCCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 45566655 478 88889999999999999988876654
No 202
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=35.90 E-value=29 Score=31.29 Aligned_cols=35 Identities=29% Similarity=0.669 Sum_probs=24.1
Q ss_pred CCCCCchhHHHHHHhhhHhHHhHHHHHhcCccCCCCCcceeecCCCCcccccCCCc
Q 007642 270 HRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKNQGCMHMTCTPPCK 325 (595)
Q Consensus 270 H~p~~C~~~~~~~~k~~~~~e~~~wi~~ntK~CPkC~~~IEK~~GCnhmtC~~~C~ 325 (595)
-+|..|..+.+-. .+ |+||+|.-+++ ++-|+..||
T Consensus 96 lRPAicdkAR~KQ----------q~-----k~CpnC~g~L~------~~~Crgh~G 130 (174)
T 1odh_A 96 LRPAICDKARQKQ----------QR-----KSCPNCNGPLK------LIPCRGHGG 130 (174)
T ss_dssp ECCCSSHHHHHHH----------HH-----SBCSSSCCBEE------EECCCTBTT
T ss_pred echHHHHHHHHHh----------hc-----CCCCCCCccee------eEeccCcCC
Confidence 4688898765421 12 99999999988 677873343
No 203
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=35.74 E-value=69 Score=23.15 Aligned_cols=40 Identities=8% Similarity=0.157 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHcCCChhhhHHHhhhc
Q 007642 78 RQEEDITRISTVLSI-SKVAASILLRFYNWSVSKVHDEWFAD 118 (595)
Q Consensus 78 ~~~~~i~~v~~vl~i-~~~~a~~LL~~~~W~~~~l~e~~~~~ 118 (595)
...+.|.++.+. |. +...+...|+..+||++..++..+..
T Consensus 10 ~~~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 10 RFQQQLEQLNSM-GFINREANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp HHHHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 345566777664 77 89999999999999999988876643
No 204
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=35.54 E-value=67 Score=26.15 Aligned_cols=50 Identities=28% Similarity=0.689 Sum_probs=34.7
Q ss_pred CccccccccccccCC---Cce-ec-CCCCcccHhHHHHHHhccccCCCCccccccCCCcCCCccc
Q 007642 140 EEMTCGICFENYPSD---RLL-AA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (595)
Q Consensus 140 ~~~~C~IC~e~~~~~---~~~-~l-~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (595)
....|.||-+.+..+ +++ .. .|+-..|+.|+.--.. +| .-.|| +|+..+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErk----eG----~q~Cp--qCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERR----EG----TQNCP--QCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHH----TS----CSSCT--TTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHh----cc----Ccccc--ccCCccc
Confidence 456899999986542 333 32 4888999999875543 45 35899 8987663
No 205
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=35.40 E-value=13 Score=29.91 Aligned_cols=28 Identities=32% Similarity=0.702 Sum_probs=21.7
Q ss_pred cCCCCCcceeecCCCCcccccCCCc--ceeeeccccccc
Q 007642 301 PCPRCKRPIEKNQGCMHMTCTPPCK--FEFCWLCLGQWS 337 (595)
Q Consensus 301 ~CPkC~~~IEK~~GCnhmtC~~~C~--~~FCw~C~~~~~ 337 (595)
.||.|+.++|+ |. .|| ..||-.|.+..+
T Consensus 33 fCPeCgq~Le~--------lk-ACGA~~yFC~~C~~LiS 62 (81)
T 2jrp_A 33 LCPDCRQPLQV--------LK-ACGAVDYFCQNGHGLIS 62 (81)
T ss_dssp ECSSSCSCCCE--------EE-ETTEEEECCTTTTCCCC
T ss_pred cCcchhhHHHH--------HH-hcCCcCeeeccCCCEee
Confidence 79999999996 55 576 578888876654
No 206
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.93 E-value=17 Score=27.74 Aligned_cols=31 Identities=35% Similarity=0.785 Sum_probs=23.4
Q ss_pred cccCCCCCCCCeeeeecCCCCceeee-cCCCcccccCCc
Q 007642 230 TKWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNCTE 267 (595)
Q Consensus 230 ~~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~ 267 (595)
...|..++|... +...+.| .|+..||..++-
T Consensus 12 ~~~Cs~~~Ck~~-------~ll~f~C~~C~~~FC~~HR~ 43 (63)
T 1x4v_A 12 TNKCERAGCRQR-------EMMKLTCERCSRNFCIKHRH 43 (63)
T ss_dssp CCCCCSTTCCCC-------CSSCCBCSSSCCBCCHHHHS
T ss_pred CCCCCccCCCCC-------CccceECCCCCcccCcccCC
Confidence 458998889753 2345799 699999998763
No 207
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=33.71 E-value=8.7 Score=33.08 Aligned_cols=25 Identities=20% Similarity=0.690 Sum_probs=0.0
Q ss_pred CCCCcccccCCCcceeeecccccccCC
Q 007642 313 QGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (595)
Q Consensus 313 ~GCnhmtC~~~C~~~FCw~C~~~~~~H 339 (595)
+.|.-+.-. |+|.|+..|...|-..
T Consensus 75 ~~~~v~~~~--C~H~FH~~CI~~Wl~~ 99 (117)
T 4a0k_B 75 EECTVAWGV--CNHAFHFHCISRWLKT 99 (117)
T ss_dssp ---------------------------
T ss_pred cccccccCC--cCceEcHHHHHHHHHc
Confidence 345445454 9999999999999643
No 208
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=33.61 E-value=14 Score=36.51 Aligned_cols=25 Identities=32% Similarity=0.697 Sum_probs=18.6
Q ss_pred ccCCCCCcceeec--CCCCcccccCCCc
Q 007642 300 KPCPRCKRPIEKN--QGCMHMTCTPPCK 325 (595)
Q Consensus 300 K~CPkC~~~IEK~--~GCnhmtC~~~C~ 325 (595)
++||.|+.+|++. +|=.-.+|. .|+
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ 269 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCP-VCQ 269 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT-TTS
T ss_pred CCCCCCCCEeeEEEECCCceEECC-CCC
Confidence 7999999999965 665555665 554
No 209
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=33.54 E-value=17 Score=37.31 Aligned_cols=26 Identities=27% Similarity=0.777 Sum_probs=21.8
Q ss_pred cCCCc-ccccCCcccCCCCCchhHHHHHHhhhHhHHhHHHHHhcCccCCCCCcceee
Q 007642 256 RCSYS-FCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEK 311 (595)
Q Consensus 256 ~C~~~-fC~~C~~~~H~p~~C~~~~~~~~k~~~~~e~~~wi~~ntK~CPkC~~~IEK 311 (595)
.|||. ||..|...+ +.||-|+.+|.+
T Consensus 312 pCgH~~fC~~C~~~~------------------------------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 312 PCGHLVVCQECAPSL------------------------------RKCPICRGIIKG 338 (345)
T ss_dssp TTCCEEECTTTGGGC------------------------------SBCTTTCCBCCE
T ss_pred CCCChhHhHHHHhcC------------------------------CcCCCCCCCccC
Confidence 89999 999997532 589999999974
No 210
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=33.51 E-value=16 Score=35.99 Aligned_cols=25 Identities=40% Similarity=1.039 Sum_probs=17.7
Q ss_pred ccCCCCCcceeec--CCCCcccccCCCc
Q 007642 300 KPCPRCKRPIEKN--QGCMHMTCTPPCK 325 (595)
Q Consensus 300 K~CPkC~~~IEK~--~GCnhmtC~~~C~ 325 (595)
++||.|+.+|++. +|=.-.+|. .|+
T Consensus 236 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ 262 (266)
T 1ee8_A 236 LPCPACGRPVERRVVAGRGTHFCP-TCQ 262 (266)
T ss_dssp SBCTTTCCBCEEEESSSCEEEECT-TTT
T ss_pred CCCCCCCCEeeEEEECCCceEECC-CCC
Confidence 8999999999965 554445554 444
No 211
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=33.04 E-value=2.3e+02 Score=31.01 Aligned_cols=68 Identities=18% Similarity=0.247 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Q 007642 455 KRQFFEYLQGEAESGLERLHQCAEKELQIYLNADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVD 527 (595)
Q Consensus 455 ~~~~fe~~Q~~le~~~E~L~~~le~e~~~~~~~~~~~~~~~~~~~~l~~lt~~~~~~~~~l~~~le~~l~~~~ 527 (595)
..+.++.+++..+..+..|.+.+|++.+.++... =..+..+|..-..+++.-|++=.+.|.+.+.++.
T Consensus 513 ~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~ 580 (592)
T 1f5n_A 513 NEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQ-----ERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQ 580 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888888888888888887776421 1234455555555666667777777777777773
No 212
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=32.78 E-value=15 Score=36.42 Aligned_cols=25 Identities=44% Similarity=0.986 Sum_probs=18.4
Q ss_pred ccCCCCCcceeec--CCCCcccccCCCc
Q 007642 300 KPCPRCKRPIEKN--QGCMHMTCTPPCK 325 (595)
Q Consensus 300 K~CPkC~~~IEK~--~GCnhmtC~~~C~ 325 (595)
++||.|+.+|+|. +|=.-.+|. .|+
T Consensus 246 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVAGRGTHYCP-RCQ 272 (273)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT-TTC
T ss_pred CCCCCCCCeEEEEEECCCCeEECC-CCC
Confidence 7999999999964 665555565 454
No 213
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=32.43 E-value=3.6e+02 Score=26.28 Aligned_cols=28 Identities=14% Similarity=0.046 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 007642 457 QFFEYLQGEAESGLERLHQCAEKELQIY 484 (595)
Q Consensus 457 ~~fe~~Q~~le~~~E~L~~~le~e~~~~ 484 (595)
.-++.+...++..++.|...|...+.+|
T Consensus 154 ~~~e~L~~ql~~~a~~L~~~l~~~~eeL 181 (273)
T 3s84_A 154 HQLEGLTFQMKKNAEELKARISASAEEL 181 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555444444333
No 214
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=32.06 E-value=16 Score=36.16 Aligned_cols=25 Identities=28% Similarity=0.757 Sum_probs=18.3
Q ss_pred ccCCCCCcceeec--CCCCcccccCCCc
Q 007642 300 KPCPRCKRPIEKN--QGCMHMTCTPPCK 325 (595)
Q Consensus 300 K~CPkC~~~IEK~--~GCnhmtC~~~C~ 325 (595)
++||.|+.+|++. +|=.-.+|. .|+
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFYCR-QCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT-TTC
T ss_pred CCCCCCCCEeeEEEECCCceEECC-CCC
Confidence 7999999999965 555555565 454
No 215
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=31.70 E-value=16 Score=35.95 Aligned_cols=25 Identities=36% Similarity=0.781 Sum_probs=18.7
Q ss_pred ccCCCCCcceeec--CCCCcccccCCCc
Q 007642 300 KPCPRCKRPIEKN--QGCMHMTCTPPCK 325 (595)
Q Consensus 300 K~CPkC~~~IEK~--~GCnhmtC~~~C~ 325 (595)
++||.|+.+|++. +|=.-.+|. .|+
T Consensus 235 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ 261 (262)
T 1k3x_A 235 EPCERCGSIIEKTTLSSRPFYWCP-GCQ 261 (262)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT-TTC
T ss_pred CCCCCCCCEeEEEEECCCCeEECC-CCC
Confidence 7999999999865 665556665 554
No 216
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=31.61 E-value=20 Score=27.86 Aligned_cols=25 Identities=16% Similarity=0.525 Sum_probs=17.6
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcc
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKF 326 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~ 326 (595)
-.|+.|+..++...+ ..+.|+ .||+
T Consensus 29 Y~C~~CG~~~e~~~~-d~irCp-~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLSRT-DAVRCK-DCGH 53 (70)
T ss_dssp EECSSSCCEECCCTT-STTCCS-SSCC
T ss_pred EECCCCCCcceeCCC-CCccCC-CCCc
Confidence 479999999776533 457777 6765
No 217
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=31.16 E-value=30 Score=25.72 Aligned_cols=26 Identities=19% Similarity=0.503 Sum_probs=15.9
Q ss_pred ccCCCCCc-ceeecCCCCcccccCCCcc
Q 007642 300 KPCPRCKR-PIEKNQGCMHMTCTPPCKF 326 (595)
Q Consensus 300 K~CPkC~~-~IEK~~GCnhmtC~~~C~~ 326 (595)
..||.|+. .|..+..=.-+.|. .||.
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~-~CGl 38 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICP-ECGL 38 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECT-TTCC
T ss_pred ccCcCCCCCceeEeCCCCeEEeC-CCCC
Confidence 57999976 56544433446666 4543
No 218
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=30.29 E-value=34 Score=27.87 Aligned_cols=53 Identities=23% Similarity=0.671 Sum_probs=33.9
Q ss_pred CCCeeeeecCCCCceeee-cCCCcccccCCcccCCCCCchhHHHHHHhhhHhHHhHHHHHhcCccCCCCCcceeecCCCC
Q 007642 238 CDYAVDFVVGSGNYDVTC-RCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKNQGCM 316 (595)
Q Consensus 238 C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~~~H~p~~C~~~~~~~~k~~~~~e~~~wi~~ntK~CPkC~~~IEK~~GCn 316 (595)
|+--|-.. ..+...|-| .|++..|..|. .+.. ...++-||+|+.+..+..|+.
T Consensus 22 CGD~VG~~-~~Ge~FVAC~eC~FPvCrpCy----------EYEr---------------keG~q~CpqCktrYkr~kgsp 75 (93)
T 1weo_A 22 CGDQIGLT-VEGDLFVACNECGFPACRPCY----------EYER---------------REGTQNCPQCKTRYKRLRGSP 75 (93)
T ss_dssp SCCBCCBC-SSSSBCCSCSSSCCCCCHHHH----------HHHH---------------HTSCSSCTTTCCCCCCCTTCC
T ss_pred ccCccccC-CCCCEEEeeeccCChhhHHHH----------HHHH---------------hccCccccccCCccccccCCC
Confidence 55444433 345677889 89998886654 2211 122389999999888666654
No 219
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=30.15 E-value=24 Score=32.56 Aligned_cols=24 Identities=21% Similarity=0.593 Sum_probs=20.1
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcc
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKF 326 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~ 326 (595)
-.||+|+.++.+.+ ++|.|. .||.
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp-~~g~ 164 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCP-ECGR 164 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECS-SSCC
T ss_pred ecccccCCceEECC--CEEECC-CCCC
Confidence 47999999998876 999998 6754
No 220
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=30.02 E-value=35 Score=27.63 Aligned_cols=38 Identities=32% Similarity=0.655 Sum_probs=26.4
Q ss_pred CCCCccccccccccccCC--CceecCCCCcccHhHHHHHH
Q 007642 137 PDGEEMTCGICFENYPSD--RLLAAACGHPFCSSCWTGYI 174 (595)
Q Consensus 137 ~~~~~~~C~IC~e~~~~~--~~~~l~CgH~fC~~C~~~yi 174 (595)
+......|.+|...|... ...--.||+.||..|....+
T Consensus 16 ~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 16 PDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred ccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 344556799999877532 22334699999999987653
No 221
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.85 E-value=19 Score=27.84 Aligned_cols=29 Identities=31% Similarity=0.764 Sum_probs=21.0
Q ss_pred CccCCCCCcceeecC--CCCcccccCCCcceeeecc
Q 007642 299 SKPCPRCKRPIEKNQ--GCMHMTCTPPCKFEFCWLC 332 (595)
Q Consensus 299 tK~CPkC~~~IEK~~--GCnhmtC~~~C~~~FCw~C 332 (595)
..+|..|++.+-..+ | +.|+ |+..||-.=
T Consensus 15 ~~rC~~C~kk~gL~~~eg---f~Cr--Cg~~FC~~H 45 (67)
T 1x4w_A 15 RRRCFQCQTKLELVQQEL---GSCR--CGYVFCMLH 45 (67)
T ss_dssp TTBCSSSCCBCCHHHHHH---HCCS--SSCCCCTTT
T ss_pred CCcchhhCCeecccccCc---eEec--CCCEehhcc
Confidence 368999998887332 2 4687 999999653
No 222
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=28.12 E-value=34 Score=30.70 Aligned_cols=33 Identities=21% Similarity=0.479 Sum_probs=22.5
Q ss_pred cccCCCCCCCCeeeeecCCCCceeee-cCCCccccc
Q 007642 230 TKWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWN 264 (595)
Q Consensus 230 ~~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~ 264 (595)
.+.||++.|+..+..... .....| .|+..+++.
T Consensus 118 ~~~c~~~~cg~g~fma~h--~~r~~cgkc~~t~~~~ 151 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLANH--KDRLYCGKCHSVYKVN 151 (152)
T ss_dssp SCBCCSTTSCSSSBEEEC--SSCEEESSSSSCCEEC
T ss_pred cCcCCCccCCCceEeccc--CCCcccCCCceEEEec
Confidence 478999999864332211 236789 999998864
No 223
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=27.87 E-value=32 Score=29.77 Aligned_cols=40 Identities=23% Similarity=0.579 Sum_probs=27.5
Q ss_pred HHHHhc-CccCCCCCcceeecCCCCcccccCCCcceeeeccccc
Q 007642 293 NWILAN-SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQ 335 (595)
Q Consensus 293 ~wi~~n-tK~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~ 335 (595)
.|+... ...|+.|+...-- .--.-.|+ .||.-||..|...
T Consensus 62 ~W~~d~~~~~C~~C~~~Fs~--~~RrHHCR-~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 62 KWAEDNEVQNCMACGKGFSV--TVRRHHCR-QCGNIFCAECSAK 102 (125)
T ss_dssp CCCCGGGCCBCTTTCCBCCS--SSCCEECT-TTCCEECGGGSCE
T ss_pred ccccCCCCCCCcCcCCcccc--ccccccCC-CCCeEEChHHhCC
Confidence 365432 4689999987641 11235788 8999999999753
No 224
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.12 E-value=16 Score=29.73 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=25.6
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~ 338 (595)
-.||-|..++. +.++-. .|||.||-.|...|-.
T Consensus 8 ~~CPI~~~~~~-----dPV~~~-~cGh~f~r~cI~~~l~ 40 (94)
T 2yu4_A 8 FTCPITKEEMK-----KPVKNK-VCGHTYEEDAIVRMIE 40 (94)
T ss_dssp CBCTTTCSBCS-----SEEEES-SSCCEEEHHHHHHHHH
T ss_pred eECcCcCchhc-----CCEEcC-CCCCeecHHHHHHHHH
Confidence 46999998776 456653 4999999999988743
No 225
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=26.75 E-value=1e+02 Score=23.96 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=25.2
Q ss_pred hCCCHHHHHHHHHHcCCChhhhHHHhhhc
Q 007642 90 LSISKVAASILLRFYNWSVSKVHDEWFAD 118 (595)
Q Consensus 90 l~i~~~~a~~LL~~~~W~~~~l~e~~~~~ 118 (595)
+|.+...|+..|+..+||++...+-.+.+
T Consensus 39 MGF~~~~a~~AL~~t~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 39 FGFAEDVARKALKASGGDIEKATDWVFNN 67 (73)
T ss_dssp HTCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 58999999999999999999988766653
No 226
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.64 E-value=50 Score=24.15 Aligned_cols=37 Identities=5% Similarity=-0.018 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCCHHH-HHHHHHHcCCChhhhHHHhhhc
Q 007642 81 EDITRISTVLSISKVA-ASILLRFYNWSVSKVHDEWFAD 118 (595)
Q Consensus 81 ~~i~~v~~vl~i~~~~-a~~LL~~~~W~~~~l~e~~~~~ 118 (595)
+.|.++.+. +.+... ++..|+..+||+++.++..|..
T Consensus 11 ~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 11 VQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 345556554 786555 5888999999999999877653
No 227
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=26.28 E-value=55 Score=28.23 Aligned_cols=36 Identities=28% Similarity=0.642 Sum_probs=25.0
Q ss_pred CCCccccccccccccCC--CceecCCCCcccHhHHHHH
Q 007642 138 DGEEMTCGICFENYPSD--RLLAAACGHPFCSSCWTGY 173 (595)
Q Consensus 138 ~~~~~~C~IC~e~~~~~--~~~~l~CgH~fC~~C~~~y 173 (595)
......|.+|...|... ...--.||+.||..|....
T Consensus 66 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 66 DNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 34456799999887432 1233469999999998654
No 228
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=26.07 E-value=33 Score=28.28 Aligned_cols=48 Identities=25% Similarity=0.569 Sum_probs=34.1
Q ss_pred CccccccccccccCCCceecCC-CCcccHhHHHHHHhccccCCCCccccccCCCcCCCccchhH
Q 007642 140 EEMTCGICFENYPSDRLLAAAC-GHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDM 202 (595)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l~C-gH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~ 202 (595)
..+.|..|.-.. + -.+.| .|..|..|+...+.. .=+|| .|+..++..+
T Consensus 27 G~~nCKsCWf~~--k--~LV~C~dHYLCl~CLtlmL~~---------SdrCp--IC~~pLPtkl 75 (99)
T 2ko5_A 27 GPQFCKSCWFEN--K--GLVECNNHYLCLNCLTLLLSV---------SNRCP--ICKMPLPTKL 75 (99)
T ss_dssp CCCCCCSSCSCC--S--SEEECSSCEEEHHHHHHTCSS---------SSEET--TTTEECCCCS
T ss_pred CcccChhhcccc--C--CeeeecchhhHHHHHHHHHhh---------ccCCc--ccCCcCCcce
Confidence 467899998542 2 22344 699999999988754 34799 8998876543
No 229
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=25.89 E-value=66 Score=29.67 Aligned_cols=30 Identities=0% Similarity=-0.248 Sum_probs=17.9
Q ss_pred CCcccCCCCCCCCeeeeecCCCCceeeecCCCcccccCC
Q 007642 228 RKTKWCPAPGCDYAVDFVVGSGNYDVTCRCSYSFCWNCT 266 (595)
Q Consensus 228 ~~~~~CP~p~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~ 266 (595)
+....||- |..++. ..|+-.||+.||..|.
T Consensus 104 p~~f~CPI--~~elm~-------DPV~~~~Ghtfer~~I 133 (179)
T 2f42_A 104 PDYLCGKI--SFELMR-------EPCITPSGITYDRKDI 133 (179)
T ss_dssp CGGGBCTT--TCSBCS-------SEEECTTSCEEEHHHH
T ss_pred cHhhcccC--ccccCC-------CCeECCCCCEECHHHH
Confidence 34567884 554332 1233379999997665
No 230
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=25.77 E-value=27 Score=28.27 Aligned_cols=28 Identities=29% Similarity=0.682 Sum_probs=19.7
Q ss_pred ccCCCCCcc--e----eecCCCCcccccCCCccee
Q 007642 300 KPCPRCKRP--I----EKNQGCMHMTCTPPCKFEF 328 (595)
Q Consensus 300 K~CPkC~~~--I----EK~~GCnhmtC~~~C~~~F 328 (595)
-.||.|+.. | .|..|=.++.|+ .|+..|
T Consensus 24 F~CPfCnh~~sV~vkidk~~~~g~l~C~-~Cg~~~ 57 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKMDRARNTGVISCT-VCLEEF 57 (85)
T ss_dssp CCCTTTCCSSCEEEEEETTTTEEEEEES-SSCCEE
T ss_pred EcCCCCCCCCeEEEEEEccCCEEEEEcc-cCCCeE
Confidence 579988765 2 345666778888 677666
No 231
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=25.65 E-value=16 Score=30.69 Aligned_cols=17 Identities=24% Similarity=0.907 Sum_probs=14.3
Q ss_pred CCcceeeecccccccCC
Q 007642 323 PCKFEFCWLCLGQWSDH 339 (595)
Q Consensus 323 ~C~~~FCw~C~~~~~~H 339 (595)
.|+|.|+..|+..|-..
T Consensus 72 ~C~H~FH~~Ci~~Wl~~ 88 (106)
T 3dpl_R 72 VCNHAFHFHCISRWLKT 88 (106)
T ss_dssp TTSCEEEHHHHHHHHTT
T ss_pred ccCcEECHHHHHHHHHc
Confidence 49999999999999543
No 232
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=25.40 E-value=20 Score=26.95 Aligned_cols=35 Identities=26% Similarity=0.710 Sum_probs=23.7
Q ss_pred cCCCCCCCCeeeeecCCCCceeee-cCCCcccccCCcccCCCC
Q 007642 232 WCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNCTEEAHRPV 273 (595)
Q Consensus 232 ~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~~~H~p~ 273 (595)
.|- +|...+. ......| .|+..||..|-.-.|..+
T Consensus 17 ~C~--~C~~~~~-----~~~~y~C~~C~~~FC~dCD~fiHe~L 52 (59)
T 1z60_A 17 FCY--GCQGELK-----DQHVYVCAVCQNVFCVDCDVFVHDSL 52 (59)
T ss_dssp EET--TTTEECT-----TSEEECCTTTTCCBCHHHHHTTTTTS
T ss_pred ccc--ccCcccC-----CCccEECCccCcCcccchhHHHHhhc
Confidence 465 4765542 1123579 999999999987777543
No 233
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=24.63 E-value=33 Score=27.81 Aligned_cols=32 Identities=28% Similarity=0.598 Sum_probs=24.1
Q ss_pred CcccCCCCCCCCeeeeecCCCCceeee-cCCCcccccCCc
Q 007642 229 KTKWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNCTE 267 (595)
Q Consensus 229 ~~~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~ 267 (595)
....|..++|.... ...+.| .|+..||..++-
T Consensus 24 ~~~~C~~~~Ck~~~-------~l~f~C~~C~~~FC~~HR~ 56 (86)
T 1wfe_A 24 KSYSCSFKGCTDVE-------LVAVICPYCEKNFCLRHRH 56 (86)
T ss_dssp CCEECCSTTCCCEE-------SSCEECTTTCCEECGGGCS
T ss_pred CCCCCCCcCCCCCC-------ccceECCCCCcccccccCC
Confidence 34579988998652 245799 799999998874
No 234
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=24.57 E-value=46 Score=28.22 Aligned_cols=31 Identities=19% Similarity=0.476 Sum_probs=21.9
Q ss_pred CcccCCCCCCCCeeeeecCC--CCceeee-cCCCcc
Q 007642 229 KTKWCPAPGCDYAVDFVVGS--GNYDVTC-RCSYSF 261 (595)
Q Consensus 229 ~~~~CP~p~C~~~i~~~~~~--~~~~v~C-~C~~~f 261 (595)
.+.+|| .|+.++...... +...+.| .|++.+
T Consensus 3 ~m~FCp--~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 3 NFQYCI--ECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCCS--SSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred cceeCc--CCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 367998 599988776432 3456789 888765
No 235
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=24.21 E-value=38 Score=29.52 Aligned_cols=30 Identities=27% Similarity=0.884 Sum_probs=19.1
Q ss_pred hcCccCCCCCcceeecCCCCcccccCCCccee
Q 007642 297 ANSKPCPRCKRPIEKNQGCMHMTCTPPCKFEF 328 (595)
Q Consensus 297 ~ntK~CPkC~~~IEK~~GCnhmtC~~~C~~~F 328 (595)
.+.-+||+|+...--..|=+ +.|. .|+++|
T Consensus 25 ~~lP~CP~C~seytYeDg~l-~vCP-eC~hEW 54 (138)
T 2akl_A 25 STLPPCPQCNSEYTYEDGAL-LVCP-ECAHEW 54 (138)
T ss_dssp CCSCCCTTTCCCCCEECSSS-EEET-TTTEEE
T ss_pred ccCCCCCCCCCcceEecCCe-EECC-cccccc
Confidence 34579999997665444432 6666 566654
No 236
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=24.10 E-value=1.3e+02 Score=22.17 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHcCCChhhhHHHhhhc
Q 007642 77 QRQEEDITRISTVLSIS-KVAASILLRFYNWSVSKVHDEWFAD 118 (595)
Q Consensus 77 ~~~~~~i~~v~~vl~i~-~~~a~~LL~~~~W~~~~l~e~~~~~ 118 (595)
....+.|.++.+. +.+ ...+...|+..+||+++.++..+..
T Consensus 15 ~~~~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 15 ERYEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HHTHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 3445567777665 765 6666888999999999998877653
No 237
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.86 E-value=1.2e+02 Score=24.29 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=28.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHHhhhc
Q 007642 82 DITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (595)
Q Consensus 82 ~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~~ 118 (595)
.|.++.+ +|.+...|...|+..+||++...+-.+..
T Consensus 32 ~i~~L~~-MGF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 32 ALRQLTE-MGFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 3445554 59999999999999999999988766654
No 238
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=23.75 E-value=41 Score=25.59 Aligned_cols=27 Identities=15% Similarity=0.375 Sum_probs=18.7
Q ss_pred ccCCCCCcceeecCCCCcccccCCCccee
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEF 328 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~F 328 (595)
-.|..|+..++...+ ..+.|+ .||+.+
T Consensus 22 Y~C~~Cg~~~~l~~~-~~iRC~-~CG~RI 48 (63)
T 3h0g_L 22 YLCADCGARNTIQAK-EVIRCR-ECGHRV 48 (63)
T ss_dssp CBCSSSCCBCCCCSS-SCCCCS-SSCCCC
T ss_pred EECCCCCCeeecCCC-CceECC-CCCcEE
Confidence 578888888875544 457887 677654
No 239
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.50 E-value=1.3e+02 Score=24.07 Aligned_cols=38 Identities=11% Similarity=0.195 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHHhhhc
Q 007642 80 EEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (595)
Q Consensus 80 ~~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~~ 118 (595)
.+.|.++.+ +++++..|...|+..+||++...+-++..
T Consensus 22 ~~~I~qL~~-MGF~~~~a~~AL~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTD-MGFPREPAEEALKSNNMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 455666666 59999999999999999999988876654
No 240
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=23.40 E-value=66 Score=25.56 Aligned_cols=38 Identities=21% Similarity=0.446 Sum_probs=26.5
Q ss_pred CCCCCccccccccccccCC--CceecCCCCcccHhHHHHH
Q 007642 136 FPDGEEMTCGICFENYPSD--RLLAAACGHPFCSSCWTGY 173 (595)
Q Consensus 136 ~~~~~~~~C~IC~e~~~~~--~~~~l~CgH~fC~~C~~~y 173 (595)
.|+.....|.+|...|... ...--.||+.||..|....
T Consensus 16 ~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 16 QEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred ccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3455667899999887532 1223469999999998654
No 241
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=23.16 E-value=38 Score=29.22 Aligned_cols=33 Identities=30% Similarity=0.736 Sum_probs=23.7
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeeccccc
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQ 335 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~ 335 (595)
..|..|+...--. =-.-.|+ .||.-||..|...
T Consensus 20 ~~C~~C~~~Fs~~--~RkHHCR-~CG~ifC~~Cs~~ 52 (120)
T 1y02_A 20 PSCKSCGAHFANT--ARKQTCL-DCKKNFCMTCSSQ 52 (120)
T ss_dssp CCCTTTCCCCSSG--GGCEECT-TTCCEECGGGEEC
T ss_pred CcccCcCCccccc--cccccCC-CCCCeeCHHHhCC
Confidence 6899998865411 1225688 7999999999764
No 242
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=23.16 E-value=40 Score=29.03 Aligned_cols=31 Identities=19% Similarity=0.468 Sum_probs=22.3
Q ss_pred CcccCCCCCCCCeeeeecC--CCCceeee-cCCCcc
Q 007642 229 KTKWCPAPGCDYAVDFVVG--SGNYDVTC-RCSYSF 261 (595)
Q Consensus 229 ~~~~CP~p~C~~~i~~~~~--~~~~~v~C-~C~~~f 261 (595)
.+.+|| .|+.++..... .....+.| .|++..
T Consensus 3 ~~~FCp--~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 3 TFRFCR--DCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCCBCS--SSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCCccc--ccCccCcccccCcCCCCEEECCcCCCee
Confidence 367999 59998876643 33456789 898765
No 243
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=22.29 E-value=44 Score=26.97 Aligned_cols=33 Identities=24% Similarity=0.480 Sum_probs=23.4
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeeccccc
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQ 335 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~ 335 (595)
..|+.|+...-.. --.-.|+ .||.-||..|...
T Consensus 10 ~~C~~C~~~F~~~--~RrHHCR-~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 10 SRCYGCAVKFTLF--KKEYGCK-NCGRAFCNGCLSF 42 (88)
T ss_dssp SBCTTTCCBCCSS--SCEEECS-SSCCEEETTTSCE
T ss_pred CCCcCcCCcccCc--cccccCC-CCCCEEChhHcCC
Confidence 6788888865411 1224688 7999999999753
No 244
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=22.24 E-value=45 Score=26.45 Aligned_cols=37 Identities=27% Similarity=0.700 Sum_probs=25.3
Q ss_pred CCCCccccccccccccCC--CceecCCCCcccHhHHHHH
Q 007642 137 PDGEEMTCGICFENYPSD--RLLAAACGHPFCSSCWTGY 173 (595)
Q Consensus 137 ~~~~~~~C~IC~e~~~~~--~~~~l~CgH~fC~~C~~~y 173 (595)
+......|.+|...|... ...--.||..||..|....
T Consensus 15 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 15 KDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 344556799998887432 1223469999999998653
No 245
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.98 E-value=6.6e+02 Score=25.78 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 007642 458 FFEYLQGEAESGLERLHQCAEKELQ 482 (595)
Q Consensus 458 ~fe~~Q~~le~~~E~L~~~le~e~~ 482 (595)
-+.-+|..++.++-++ +.||..|.
T Consensus 135 ~ir~Lq~~l~~q~~ki-qRLE~~Id 158 (390)
T 1deq_A 135 RINLLQKNVRDQLVDM-KRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4455555555555554 34666663
No 246
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=21.71 E-value=61 Score=31.25 Aligned_cols=36 Identities=28% Similarity=0.764 Sum_probs=0.0
Q ss_pred hHHHHHhcCccCCCCCc-ceeecCCCCc---ccccCCCccee
Q 007642 291 NMNWILANSKPCPRCKR-PIEKNQGCMH---MTCTPPCKFEF 328 (595)
Q Consensus 291 ~~~wi~~ntK~CPkC~~-~IEK~~GCnh---mtC~~~C~~~F 328 (595)
+..|+..|. -||.|+. +|.+-+.=.. .+|. .|+-+|
T Consensus 27 TE~Wv~~n~-yCPnCG~~~l~~f~nN~PVaDF~C~-~C~Eey 66 (257)
T 4esj_A 27 TEDWVYRQS-YCPNCGNNPLNHFENNRPVADFYCN-HCSEEF 66 (257)
T ss_dssp HHHHHHHHC-CCTTTCCSSCEEC----CCCEEECT-TTCCEE
T ss_pred hHHHHHHCC-cCCCCCChhhhhccCCCcccccccC-Ccchhh
No 247
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=21.44 E-value=37 Score=29.27 Aligned_cols=38 Identities=24% Similarity=0.589 Sum_probs=22.7
Q ss_pred CCCCccccccccccccCC--CceecCCCCcccHhHHHHHH
Q 007642 137 PDGEEMTCGICFENYPSD--RLLAAACGHPFCSSCWTGYI 174 (595)
Q Consensus 137 ~~~~~~~C~IC~e~~~~~--~~~~l~CgH~fC~~C~~~yi 174 (595)
|......|..|-..|... ...--.||..||..|....+
T Consensus 15 Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~ 54 (120)
T 1y02_A 15 PTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG 54 (120)
T ss_dssp -----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--
T ss_pred CccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCC
Confidence 455567899998877431 22334699999999976554
No 248
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=21.40 E-value=39 Score=31.51 Aligned_cols=28 Identities=29% Similarity=0.632 Sum_probs=17.9
Q ss_pred ccCCCCCcce-eecCCCCcccccCCCcceee
Q 007642 300 KPCPRCKRPI-EKNQGCMHMTCTPPCKFEFC 329 (595)
Q Consensus 300 K~CPkC~~~I-EK~~GCnhmtC~~~C~~~FC 329 (595)
+.||+|+..+ -....+.| +|. .|++.|+
T Consensus 114 ~~Cp~Cg~g~fma~h~dR~-~CG-kC~~t~~ 142 (189)
T 2xzm_9 114 KGCPKCGPGIFMAKHYDRH-YCG-KCHLTLK 142 (189)
T ss_dssp EECSTTCSSCEEEECSSCE-EET-TTCCCBC
T ss_pred ccCCccCCCccccCccCCC-ccC-CceeEEE
Confidence 7899999654 34455554 676 5655553
No 249
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=21.12 E-value=28 Score=32.37 Aligned_cols=74 Identities=16% Similarity=0.314 Sum_probs=41.2
Q ss_pred cccccccccccCCC----ceec-CCCCcccHhHHHHHHh--ccccCCCCccccccCCCcCCCccchhHHhhhcChHHHHH
Q 007642 142 MTCGICFENYPSDR----LLAA-ACGHPFCSSCWTGYIS--TAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKVK 214 (595)
Q Consensus 142 ~~C~IC~e~~~~~~----~~~l-~CgH~fC~~C~~~yi~--~~i~~g~~~~~i~CP~~~C~~~v~~~~i~~ll~~e~~ek 214 (595)
..||||...+..++ ++.. .|..-|...|..-.-. ..+.+-+....+.|| .|...-++. ++..+..++...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp--~C~~~~~~~-~~~~~~~el~~~ 79 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCV--NCTERHPAE-WRLALEKELQIS 79 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCT--TTCCSSSCH-HHHHHHHHHHHH
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECc--CCCCCCCHH-HHHHHHHHHHHH
Confidence 35999998876654 4444 4888888888742111 111100001258999 898776543 444444455444
Q ss_pred HHHH
Q 007642 215 YNRY 218 (595)
Q Consensus 215 y~~~ 218 (595)
+.+.
T Consensus 80 l~~v 83 (183)
T 3lqh_A 80 LKQV 83 (183)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 250
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.00 E-value=21 Score=29.85 Aligned_cols=38 Identities=29% Similarity=0.642 Sum_probs=29.2
Q ss_pred CCcccHhHHHHHHhccccCCCCccccccCCCcCCCccch
Q 007642 162 GHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (595)
Q Consensus 162 gH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (595)
.|.-|..|+.......+..+..+.++.|| ..|...|..
T Consensus 13 ~h~HC~~C~~~~C~~~~~~~~~C~~i~CP-~~Cga~i~r 50 (100)
T 2yre_A 13 QHSHCVNCVSRRCMTRPEPGISCDLIGCP-LVCGAVFHS 50 (100)
T ss_dssp CCTTGGGCCCTTCCCCCCTTTCCCEEECT-TCCSCEEEH
T ss_pred cchhHhhhcccccCCCCCCCCeeeeeeCC-cccCCeeeh
Confidence 47888888888877777667678899999 378876654
No 251
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=20.87 E-value=51 Score=24.34 Aligned_cols=20 Identities=35% Similarity=1.007 Sum_probs=15.4
Q ss_pred ccCCCCCcceeecCCCCccccc
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCT 321 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~ 321 (595)
-.||.|+.+++-.. ..+.|.
T Consensus 11 L~CP~c~~~L~~~~--~~L~C~ 30 (56)
T 2kpi_A 11 LACPACHAPLEERD--AELICT 30 (56)
T ss_dssp CCCSSSCSCEEEET--TEEEEC
T ss_pred eeCCCCCCcceecC--CEEEcC
Confidence 58999999988665 556665
No 252
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=20.87 E-value=33 Score=33.78 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=25.4
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeeccccccc
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWS 337 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~ 337 (595)
-.||-|..++. ..++-. .|||.||-.|...|-
T Consensus 182 l~CPIcl~~f~-----DPVts~-~CGHsFcR~cI~~~~ 213 (267)
T 3htk_C 182 LTCPITCKPYE-----APLISR-KCNHVFDRDGIQNYL 213 (267)
T ss_dssp SBCTTTSSBCS-----SEEEES-SSCCEEEHHHHHHHS
T ss_pred eECcCccCccc-----CCeeeC-CCCCcccHHHHHHHH
Confidence 58999998886 556665 599999999988764
No 253
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=20.71 E-value=50 Score=31.27 Aligned_cols=33 Identities=24% Similarity=0.618 Sum_probs=24.0
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeeccccc
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQ 335 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~ 335 (595)
..|+.|+...-- .--.-.|+ .||.-||..|...
T Consensus 162 ~~C~~C~~~F~~--~~rrhhCr-~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 162 RVCHRCRVEFTF--TNRKHHCR-NCGQVFCGQCTAK 194 (220)
T ss_dssp SBCTTTCCBCCS--SSCCEECT-TTCCEECSTTSCE
T ss_pred CccCCCCCccCC--cccccccC-CcCCEEChHHhCC
Confidence 689999876531 12235688 7999999999753
No 254
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=20.67 E-value=47 Score=24.89 Aligned_cols=37 Identities=32% Similarity=0.729 Sum_probs=27.7
Q ss_pred ccCCCCCcceeecCCCCcccccCCCcceeeecccccccCC
Q 007642 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (595)
Q Consensus 300 K~CPkC~~~IEK~~GCnhmtC~~~C~~~FCw~C~~~~~~H 339 (595)
-.|+.|.+.=- ..||-|. |. .|+..||-.|++.+.--
T Consensus 10 ~~C~iC~KTKF-ADG~Gh~-C~-yCk~r~CaRCGg~v~lr 46 (62)
T 2a20_A 10 PTCGICHKTKF-ADGCGHN-CS-YCQTKFCARCGGRVSLR 46 (62)
T ss_dssp CCCSSSSCSCC-CSSCCEE-BT-TTCCEECTTSEEEEESS
T ss_pred chhhhhcccee-ccCCCcc-cc-ccCCeeecccCCEeeec
Confidence 56888876432 4788886 55 59999999999987643
No 255
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=20.39 E-value=74 Score=24.36 Aligned_cols=30 Identities=20% Similarity=0.409 Sum_probs=21.1
Q ss_pred ccCCCCCCCCeeeeecCCCCceeee-cCCCcccc
Q 007642 231 KWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCW 263 (595)
Q Consensus 231 ~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~ 263 (595)
+.|| +|...-..- ......|.| .|+...|.
T Consensus 8 VKCp--~C~niq~VF-ShA~tvV~C~~Cg~~L~~ 38 (66)
T 1qxf_A 8 VKCP--DCEHEQVIF-DHPSTIVKCIICGRTVAE 38 (66)
T ss_dssp EECT--TTCCEEEEE-SSCSSCEECSSSCCEEEE
T ss_pred EECC--CCCCceEEE-ecCceEEEcccCCCEEee
Confidence 5788 698654332 345667899 89999884
No 256
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=20.34 E-value=42 Score=33.42 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=18.9
Q ss_pred ccCCCCCcceeecC-CCCcccccCCCcceeeecccc
Q 007642 300 KPCPRCKRPIEKNQ-GCMHMTCTPPCKFEFCWLCLG 334 (595)
Q Consensus 300 K~CPkC~~~IEK~~-GCnhmtC~~~C~~~FCw~C~~ 334 (595)
++||.|+.+|++.. |= . .=.+.||-.|.+
T Consensus 252 ~pC~~CGt~I~~~~~g~-----~-gRsTyfCp~~~~ 281 (287)
T 3w0f_A 252 PNCDQCHSKITVCRFGE-----N-SRMTYFCPHCQK 281 (287)
T ss_dssp SBCTTTCCBCEEECSST-----T-CCCEEECTTTSC
T ss_pred CCCCCCCCEEEEEEecC-----C-CCCEEECCCccc
Confidence 49999999999631 10 0 135677777753
No 257
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.20 E-value=1.1e+02 Score=23.03 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-ChhhhHHHhhh
Q 007642 82 DITRISTVLSISKVAASILLRFYNW-SVSKVHDEWFA 117 (595)
Q Consensus 82 ~i~~v~~vl~i~~~~a~~LL~~~~W-~~~~l~e~~~~ 117 (595)
.|.++.+ ++.++..|...|+..+| |++...+-.+.
T Consensus 22 ~i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 22 ALDVLLS-MGFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 3555555 69999999999999999 99888776554
Done!