Query 007644
Match_columns 595
No_of_seqs 264 out of 943
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 13:25:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007644.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007644hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 3.1E-87 6.8E-92 678.2 22.7 257 198-464 1-258 (258)
2 KOG4441 Proteins containing BT 99.9 1.8E-26 3.9E-31 258.4 15.2 232 17-320 26-260 (571)
3 PHA02790 Kelch-like protein; P 99.9 1.2E-25 2.6E-30 246.7 9.9 177 16-240 11-194 (480)
4 PHA02713 hypothetical protein; 99.9 4E-25 8.7E-30 246.9 9.9 181 17-239 15-198 (557)
5 PHA03098 kelch-like protein; P 99.9 2.7E-22 5.9E-27 221.3 10.5 170 24-239 6-179 (534)
6 PF00651 BTB: BTB/POZ domain; 99.7 4.4E-17 9.4E-22 142.3 8.3 104 20-131 3-110 (111)
7 smart00225 BTB Broad-Complex, 99.6 2E-15 4.3E-20 124.2 6.4 89 29-125 1-90 (90)
8 KOG2075 Topoisomerase TOP1-int 99.3 1.4E-11 3E-16 133.1 9.3 184 16-239 103-293 (521)
9 KOG4350 Uncharacterized conser 99.2 1.6E-11 3.6E-16 130.1 7.7 178 19-239 36-218 (620)
10 KOG4591 Uncharacterized conser 99.0 6.9E-10 1.5E-14 109.0 5.5 168 7-217 43-218 (280)
11 KOG4682 Uncharacterized conser 98.5 1.7E-07 3.7E-12 100.1 8.1 177 21-239 63-245 (488)
12 KOG0783 Uncharacterized conser 98.3 7.7E-07 1.7E-11 101.5 4.8 127 26-170 711-847 (1267)
13 KOG0783 Uncharacterized conser 98.2 2.5E-06 5.4E-11 97.5 7.6 65 25-91 556-633 (1267)
14 PF11822 DUF3342: Domain of un 97.8 1.6E-05 3.5E-10 83.7 4.8 93 30-132 1-104 (317)
15 smart00512 Skp1 Found in Skp1 96.5 0.0021 4.6E-08 57.1 3.5 79 30-111 4-104 (104)
16 PF02214 BTB_2: BTB/POZ domain 96.2 0.0027 5.8E-08 55.0 2.1 81 30-113 1-88 (94)
17 KOG2716 Polymerase delta-inter 95.8 0.03 6.5E-07 57.2 8.0 94 30-132 7-105 (230)
18 KOG3473 RNA polymerase II tran 95.4 0.035 7.5E-07 49.7 5.7 73 35-110 25-111 (112)
19 PF03931 Skp1_POZ: Skp1 family 94.9 0.086 1.9E-06 42.8 6.3 55 30-88 3-58 (62)
20 KOG2838 Uncharacterized conser 94.5 0.024 5.1E-07 59.1 2.5 98 11-111 115-218 (401)
21 KOG1724 SCF ubiquitin ligase, 93.2 0.081 1.8E-06 51.4 3.6 90 34-132 12-127 (162)
22 PF07707 BACK: BTB And C-termi 84.8 0.62 1.3E-05 40.0 2.1 68 146-239 1-70 (103)
23 KOG2838 Uncharacterized conser 79.2 2.1 4.7E-05 45.0 3.9 55 38-95 262-329 (401)
24 KOG2714 SETA binding protein S 71.8 8.3 0.00018 42.9 6.2 81 30-113 13-99 (465)
25 KOG0511 Ankyrin repeat protein 70.3 0.7 1.5E-05 50.4 -2.3 91 18-112 138-232 (516)
26 COG5201 SKP1 SCF ubiquitin lig 69.0 19 0.00041 34.3 7.0 117 30-168 4-146 (158)
27 KOG3840 Uncharaterized conserv 68.8 28 0.00061 37.5 9.0 90 22-113 90-186 (438)
28 smart00875 BACK BTB And C-term 66.0 4.1 8.9E-05 34.3 2.0 36 203-239 35-70 (101)
29 PF01466 Skp1: Skp1 family, di 65.1 3 6.4E-05 35.5 0.9 33 94-132 11-43 (78)
30 KOG0511 Ankyrin repeat protein 64.3 6.2 0.00013 43.4 3.3 74 37-113 301-379 (516)
31 KOG1665 AFH1-interacting prote 59.5 35 0.00075 35.4 7.4 89 29-126 10-105 (302)
32 PF14363 AAA_assoc: Domain ass 58.6 5.3 0.00012 35.4 1.4 42 417-459 30-71 (98)
33 KOG1987 Speckle-type POZ prote 57.3 8.7 0.00019 39.7 2.9 89 36-132 109-201 (297)
34 KOG3713 Voltage-gated K+ chann 52.7 48 0.001 37.7 7.8 94 25-127 28-135 (477)
35 KOG2715 Uncharacterized conser 38.4 1.2E+02 0.0026 30.3 7.1 94 28-129 21-119 (210)
36 PF10929 DUF2811: Protein of u 31.6 33 0.00072 28.1 1.8 19 427-445 9-27 (57)
37 KOG2016 NEDD8-activating compl 31.3 1.4E+02 0.0031 33.9 7.2 96 349-444 294-434 (523)
38 COG3510 CmcI Cephalosporin hyd 26.7 31 0.00067 35.1 1.1 36 413-448 182-219 (237)
39 PF11123 DNA_Packaging_2: DNA 23.4 51 0.0011 28.6 1.6 16 426-441 31-46 (82)
40 PHA00617 ribbon-helix-helix do 22.7 1.3E+02 0.0028 26.3 4.0 37 206-242 44-80 (80)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=3.1e-87 Score=678.19 Aligned_cols=257 Identities=47% Similarity=0.797 Sum_probs=223.7
Q ss_pred CCceecccccCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHcCCcccccCCCCCCCCCCCCcccchhhhhhhHHHH
Q 007644 198 KDWWTEDISELDIELFRCIVTAVRSTYMLPPQLIGEALHVYACRWLPDITKTKTRSTESSSGSQTQTDAISVGKNRRILE 277 (595)
Q Consensus 198 ~~WW~EDl~~L~~d~f~rvI~am~s~g~~~ee~V~~aL~~Ya~rwL~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~llE 277 (595)
++|||||++.|++++|+|||.+|+++| +++++|+++|++||+||||++.+...... ...........+||.+||
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~-~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~-----~~~~~~~~~~~~~r~llE 74 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKG-MKPEVIGEALMHYAKKWLPGLSRSSSGSS-----SSAESSTSSENEQRELLE 74 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCccccccccc-----ccccccchhHHHHHHHHH
Confidence 479999999999999999999999999 89999999999999999999965421110 111111245679999999
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccCcccccccCCCCCCCCccccccHHHHHHHH
Q 007644 278 TIVSMIPSDRGSVSVGFLLRLLSTAIYLGGVSPVTKTELRRRASIQFEEATVGDLLLPSHSPSDNHHQYIYDIDLVMTVL 357 (595)
Q Consensus 278 tiV~lLP~er~svsc~fLf~LLR~A~~l~~as~~cr~~LErRIg~QLdqAtLdDLLIPs~~~~~~~~~tlYDVd~V~Ril 357 (595)
+||+|||.+|++|||+|||+|||+|++++ ||+.||.+||+|||.|||||||+|||||+.+... +|+||||+|+|||
T Consensus 75 tiV~lLP~e~~svsc~FL~~LLr~A~~l~-as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~---~t~yDVd~V~riv 150 (258)
T PF03000_consen 75 TIVSLLPPEKGSVSCSFLFRLLRAAIMLG-ASSACRNELERRIGSQLDQATLDDLLIPSSPSGE---DTLYDVDLVQRIV 150 (258)
T ss_pred HHHHhCCCCCCcccHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcc---cchhhHHHHHHHH
Confidence 99999999999999999999999999999 9999999999999999999999999999932322 5999999999999
Q ss_pred HHHHhhhhccCCCCC-CCCCCchhhhHHHHHHHHHHHHHhhhhhCCCCCChhHHHHHHHhcCcccccccchhhHHHHHHH
Q 007644 358 ESYLVLWRRQSPGTT-PAESNNQFLMSSIRKVAKIIDSYLQVVARDINMPVMKLVSLAETLPAIARGKHDDLYKFINIYL 436 (595)
Q Consensus 358 ~~Fl~~~~~~~~~~~-~~~~~~~~~~~~l~kVakLvD~YLaEIA~D~nL~~sKF~~LAealPd~AR~~hDgLYRAIDiYL 436 (595)
++||.+++....... ......++...++.+||||||+||+|||+|+||+|+||++|||++|++||++||||||||||||
T Consensus 151 ~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YL 230 (258)
T PF03000_consen 151 EHFLSQEEEAGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYL 230 (258)
T ss_pred HHHHhcccccccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHH
Confidence 999987543211100 0112223456899999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHhhhhcccccCCCCHHHH
Q 007644 437 KEHPELSKTERKRLCRILDCQKLSPEVR 464 (595)
Q Consensus 437 KaHp~Lse~Er~~lCr~ldcqKLS~EAc 464 (595)
|+||+||++||++||++|||||||+|||
T Consensus 231 k~Hp~ls~~Er~~lC~~ldc~KLS~EAC 258 (258)
T PF03000_consen 231 KAHPGLSEEERKRLCRLLDCQKLSPEAC 258 (258)
T ss_pred HHcccCCHHHHHHHHhhCCcccCCcccC
Confidence 9999999999999999999999999999
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.94 E-value=1.8e-26 Score=258.35 Aligned_cols=232 Identities=15% Similarity=0.180 Sum_probs=189.4
Q ss_pred ccccccccCCCeeEEEEEcCEEEEeccceeccCChHHHHhhCCC-CCCCcceEEecCCCCCHHHHHHHHHHhhCCceeec
Q 007644 17 EATRTVISDAPSDLVIQVNNIRYLLHKFPLLPKCGLLQRLCSDP-EDSDSVTIELHDIPGGEDAFELCAKFCYGITINLS 95 (595)
Q Consensus 17 ~~~~~r~~~~l~DVtl~V~g~~F~lHK~vLas~S~YFr~Lf~~~-~e~~~~~I~L~d~pGGa~afelll~FcYg~~i~It 95 (595)
+-..+|.++.+|||+|.|++++|++||.||||+|+|||+||++. +|+.+.+|+|++++ +++++.+++|+||+++.|+
T Consensus 26 ~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~--~~~l~~ll~y~Yt~~i~i~ 103 (571)
T KOG4441|consen 26 GLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVD--PETLELLLDYAYTGKLEIS 103 (571)
T ss_pred HHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCC--HHHHHHHHHHhhcceEEec
Confidence 44679999999999999999999999999999999999999976 78889999999998 6999999999999999999
Q ss_pred CCchhhHHHhhcccCcccccccchHHHHHHHHhHHhhhcchhhHHHHHhhhhhHHHHHHhcCccccchHHHHHHHhcCCC
Q 007644 96 AHNFVPAFCAAKFLRMAESVEKGNFILKLESFFHSCILEGWKDSIVTLKTTNKLSEWSENLGIIRRCIDSIVEKILTPIS 175 (595)
Q Consensus 96 ~~NV~~LlcAA~~LqM~e~~~~gNL~~~ce~FL~~~v~~sw~dsl~~L~~C~~L~~~Ae~~~iv~rcidsLa~ka~~~~~ 175 (595)
.+||+.|+.||.+|||++ |++.|++||.+++ .+.||.++..+|+.+++ ..|..++.
T Consensus 104 ~~nVq~ll~aA~~lQi~~------v~~~C~~fL~~~l---------~~~Nclgi~~~a~~~~~-----~~L~~~a~---- 159 (571)
T KOG4441|consen 104 EDNVQELLEAASLLQIPE------VVDACCEFLESQL---------DPSNCLGIRRFAELHSC-----TELLEVAD---- 159 (571)
T ss_pred hHhHHHHHHHHHHhhhHH------HHHHHHHHHHhcC---------CHHHHHHHHHHHHhcCc-----HHHHHHHH----
Confidence 999999999999999996 8999999999999 55699999999999998 36666654
Q ss_pred cccccccccCCCcccccccCCCCCceecccccCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHcCCcccccCCCCC
Q 007644 176 KVSWSYTYTRPGYTQKRHQIAPKDWWTEDISELDIELFRCIVTAVRSTYMLPPQLIGEALHVYACRWLPDITKTKTRSTE 255 (595)
Q Consensus 176 ~~~~s~~~~~~~~~~~~~~~~~~~WW~EDl~~L~~d~f~rvI~am~s~g~~~ee~V~~aL~~Ya~rwL~~~~~~~~~~~~ 255 (595)
.|+ ..+|...|-.||+..||.+.+..+|....-.- -+|+.|+++++.|+ +...
T Consensus 160 ----~~i----------~~~F~~v~~~eefl~L~~~~l~~ll~~d~l~v-~~E~~vf~a~~~Wv--------~~d~---- 212 (571)
T KOG4441|consen 160 ----EYI----------LQHFAEVSKTEEFLLLSLEELIGLLSSDDLNV-DSEEEVFEAAMRWV--------KHDF---- 212 (571)
T ss_pred ----HHH----------HHHHHHHhccHHhhCCCHHHHHhhccccCCCc-CCHHHHHHHHHHHH--------hcCH----
Confidence 122 13466778899999999999999995554433 67778999999998 2100
Q ss_pred CCCCCCCcccchhhhhhhH--HHHHHHHhcCCCCCcccHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 007644 256 SSSGSQTQTDAISVGKNRR--ILETIVSMIPSDRGSVSVGFLLRLLSTAIYLGGVSPVTKTELRRRA 320 (595)
Q Consensus 256 ~~~~~~s~~~~~~~~~~R~--llEtiV~lLP~er~svsc~fLf~LLR~A~~l~~as~~cr~~LErRI 320 (595)
..++.. -|...|++ | -++-+||.........+. .+..|+.-|..=.
T Consensus 213 -------------~~R~~~~~~ll~~vr~-~----ll~~~~l~~~v~~~~~~~-~~~~c~~~l~ea~ 260 (571)
T KOG4441|consen 213 -------------EEREEHLPALLEAVRL-P----LLPPQFLVEIVESEPLIK-RDSACRDLLDEAK 260 (571)
T ss_pred -------------hhHHHHHHHHHHhcCc-c----CCCHHHHHHHHhhhhhhc-cCHHHHHHHHHHH
Confidence 011111 22222332 3 377889999999988888 9999998886533
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=99.92 E-value=1.2e-25 Score=246.66 Aligned_cols=177 Identities=7% Similarity=0.049 Sum_probs=143.3
Q ss_pred cccccccccCCCeeEEEEEcCEEEEeccceeccCChHHHHhhCCC-CCCCcceEEe--cCCCCCHHHHHHHHHHhhCCce
Q 007644 16 EEATRTVISDAPSDLVIQVNNIRYLLHKFPLLPKCGLLQRLCSDP-EDSDSVTIEL--HDIPGGEDAFELCAKFCYGITI 92 (595)
Q Consensus 16 ~~~~~~r~~~~l~DVtl~V~g~~F~lHK~vLas~S~YFr~Lf~~~-~e~~~~~I~L--~d~pGGa~afelll~FcYg~~i 92 (595)
.+-..++.++.+|||++ |.|++|+|||.||||+|+|||+||++. +|+.+ +|.+ .|++ +++|+.+++|+|||+|
T Consensus 11 ~~~~~~~~~~~~~~~~~-~~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~--~~~l~~lldy~YTg~l 86 (480)
T PHA02790 11 KNILALSMTKKFKTIIE-AIGGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLD--IHSLTSIVIYSYTGKV 86 (480)
T ss_pred hhHHHHHhhhhhceEEE-EcCcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcC--HHHHHHHHHhheeeeE
Confidence 35556888999999776 566699999999999999999999975 66643 5655 3787 6999999999999999
Q ss_pred eecCCchhhHHHhhcccCcccccccchHHHHHHHHhHHhhhcchhhHHHHHhhhhhHHHHHHhcCccccchHHHHHHHhc
Q 007644 93 NLSAHNFVPAFCAAKFLRMAESVEKGNFILKLESFFHSCILEGWKDSIVTLKTTNKLSEWSENLGIIRRCIDSIVEKILT 172 (595)
Q Consensus 93 ~It~~NV~~LlcAA~~LqM~e~~~~gNL~~~ce~FL~~~v~~sw~dsl~~L~~C~~L~~~Ae~~~iv~rcidsLa~ka~~ 172 (595)
.||.+||+.|+.||.+|||++ |++.|++||.+++ .+.||.+++.+|+.|++ +.|..+|..
T Consensus 87 ~it~~nV~~ll~aA~~Lqi~~------v~~~C~~fL~~~l---------~~~NCl~i~~~A~~y~~-----~~L~~~a~~ 146 (480)
T PHA02790 87 YIDSHNVVNLLRASILTSVEF------IIYTCINFILRDF---------RKEYCVECYMMGIEYGL-----SNLLCHTKD 146 (480)
T ss_pred EEecccHHHHHHHHHHhChHH------HHHHHHHHHHhhC---------CcchHHHHHHHHHHhCH-----HHHHHHHHH
Confidence 999999999999999999996 9999999999999 55699999999999998 678777641
Q ss_pred CCCcccccccccCCCcccccccCCCCCce--ecccccCCHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHH
Q 007644 173 PISKVSWSYTYTRPGYTQKRHQIAPKDWW--TEDISELDIELFRCIVTAVRSTYM--LPPQLIGEALHVYAC 240 (595)
Q Consensus 173 ~~~~~~~s~~~~~~~~~~~~~~~~~~~WW--~EDl~~L~~d~f~rvI~am~s~g~--~~ee~V~~aL~~Ya~ 240 (595)
|.. .+|..... ++||..|++ ..+| .++.+ .+|+.|++++++|++
T Consensus 147 --------fi~----------~nF~~v~~~~~~ef~~L~~---~~lL---ssd~L~v~~Ee~V~eav~~Wl~ 194 (480)
T PHA02790 147 --------FIA----------KHFLELEDDIIDNFDYLSM---KLIL---ESDELNVPDEDYVVDFVIKWYM 194 (480)
T ss_pred --------HHH----------HhHHHHhcccchhhhhCCH---HHhc---ccccCCCccHHHHHHHHHHHHH
Confidence 110 12333333 378999996 4566 44443 467789999999985
No 4
>PHA02713 hypothetical protein; Provisional
Probab=99.91 E-value=4e-25 Score=246.86 Aligned_cols=181 Identities=16% Similarity=0.187 Sum_probs=147.1
Q ss_pred ccccccccCCCeeEEEEEc-CEEEEeccceeccCChHHHHhhCCC-CCC-CcceEEecCCCCCHHHHHHHHHHhhCCcee
Q 007644 17 EATRTVISDAPSDLVIQVN-NIRYLLHKFPLLPKCGLLQRLCSDP-EDS-DSVTIELHDIPGGEDAFELCAKFCYGITIN 93 (595)
Q Consensus 17 ~~~~~r~~~~l~DVtl~V~-g~~F~lHK~vLas~S~YFr~Lf~~~-~e~-~~~~I~L~d~pGGa~afelll~FcYg~~i~ 93 (595)
+-..+|.++.+|||+|.|+ |++|+|||.||||+|+|||+||++. +|+ .+.+|+|+|++ +++|+.+++|+||++
T Consensus 15 ~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~--~~~~~~ll~y~Yt~~-- 90 (557)
T PHA02713 15 NISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFD--KDAVKNIVQYLYNRH-- 90 (557)
T ss_pred HHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCC--HHHHHHHHHHhcCCC--
Confidence 4456889999999999998 8999999999999999999999986 554 36789999998 799999999999997
Q ss_pred ecCCchhhHHHhhcccCcccccccchHHHHHHHHhHHhhhcchhhHHHHHhhhhhHHHHHHhcCccccchHHHHHHHhcC
Q 007644 94 LSAHNFVPAFCAAKFLRMAESVEKGNFILKLESFFHSCILEGWKDSIVTLKTTNKLSEWSENLGIIRRCIDSIVEKILTP 173 (595)
Q Consensus 94 It~~NV~~LlcAA~~LqM~e~~~~gNL~~~ce~FL~~~v~~sw~dsl~~L~~C~~L~~~Ae~~~iv~rcidsLa~ka~~~ 173 (595)
|+++||+.|+.||++|||++ |++.|++||.+++ ...||.+++.+++.+++. .|..+|..
T Consensus 91 i~~~nv~~ll~aA~~lqi~~------l~~~C~~~l~~~l---------~~~NCl~i~~~~~~~~~~-----~L~~~a~~- 149 (557)
T PHA02713 91 ISSMNVIDVLKCADYLLIDD------LVTDCESYIKDYT---------NHDTCIYMYHRLYEMSHI-----PIVKYIKR- 149 (557)
T ss_pred CCHHHHHHHHHHHHHHCHHH------HHHHHHHHHHhhC---------CccchHHHHHHHHhccch-----HHHHHHHH-
Confidence 78999999999999999996 9999999999999 556999999888877752 35444321
Q ss_pred CCcccccccccCCCcccccccCCCCCceecccccCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 007644 174 ISKVSWSYTYTRPGYTQKRHQIAPKDWWTEDISELDIELFRCIVTAVRSTYMLPPQLIGEALHVYA 239 (595)
Q Consensus 174 ~~~~~~s~~~~~~~~~~~~~~~~~~~WW~EDl~~L~~d~f~rvI~am~s~g~~~ee~V~~aL~~Ya 239 (595)
|. .+++....-.|||..|+.+.+..+|.....-...+|+.|++++++|+
T Consensus 150 -------~i----------~~~f~~v~~~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~ 198 (557)
T PHA02713 150 -------ML----------MSNIPTLITTDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWL 198 (557)
T ss_pred -------HH----------HHHHHHHhCChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHH
Confidence 11 01233334469999999999999994322112257889999999998
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.87 E-value=2.7e-22 Score=221.28 Aligned_cols=170 Identities=15% Similarity=0.132 Sum_probs=141.1
Q ss_pred cCCCeeEEEEE--cCEEEEeccceeccCChHHHHhhCCCCCCCcceEEecCCCCCHHHHHHHHHHhhCCceeecCCchhh
Q 007644 24 SDAPSDLVIQV--NNIRYLLHKFPLLPKCGLLQRLCSDPEDSDSVTIELHDIPGGEDAFELCAKFCYGITINLSAHNFVP 101 (595)
Q Consensus 24 ~~~l~DVtl~V--~g~~F~lHK~vLas~S~YFr~Lf~~~~e~~~~~I~L~d~pGGa~afelll~FcYg~~i~It~~NV~~ 101 (595)
++.+|||+|.| +|++|++||.+|+++|+||++||++... +.+|+|++ + +++|+.+++|+||++++|+.+||..
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~--~~~i~l~~-~--~~~~~~~l~y~Ytg~~~i~~~~~~~ 80 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK--ENEINLNI-D--YDSFNEVIKYIYTGKINITSNNVKD 80 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC--CceEEecC-C--HHHHHHHHHHhcCCceEEcHHHHHH
Confidence 78999999998 9999999999999999999999997643 56899988 6 6999999999999999999999999
Q ss_pred HHHhhcccCcccccccchHHHHHHHHhHHhhhcchhhHHHHHhhhhhHHHHHHhcCccccchHHHHHHHhcCCCcccccc
Q 007644 102 AFCAAKFLRMAESVEKGNFILKLESFFHSCILEGWKDSIVTLKTTNKLSEWSENLGIIRRCIDSIVEKILTPISKVSWSY 181 (595)
Q Consensus 102 LlcAA~~LqM~e~~~~gNL~~~ce~FL~~~v~~sw~dsl~~L~~C~~L~~~Ae~~~iv~rcidsLa~ka~~~~~~~~~s~ 181 (595)
|+.||++|||++ |+..|++||.+.+ ...||..++.+|+.+++ +.|...+. .|
T Consensus 81 ll~~A~~l~~~~------l~~~C~~~l~~~l---------~~~nc~~~~~~a~~~~~-----~~L~~~~~--------~~ 132 (534)
T PHA03098 81 ILSIANYLIIDF------LINLCINYIIKII---------DDNNCIDIYRFSFFYGC-----KKLYSAAY--------NY 132 (534)
T ss_pred HHHHHHHhCcHH------HHHHHHHHHHHhC---------CHhHHHHHHHHHHHcCc-----HHHHHHHH--------HH
Confidence 999999999996 9999999999988 56799999999999987 45544432 11
Q ss_pred cccCCCcccccccCCCCCceecccccCCHHHHHHHHHHHHhcCC--CChhhHHHHHHHHH
Q 007644 182 TYTRPGYTQKRHQIAPKDWWTEDISELDIELFRCIVTAVRSTYM--LPPQLIGEALHVYA 239 (595)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~WW~EDl~~L~~d~f~rvI~am~s~g~--~~ee~V~~aL~~Ya 239 (595)
.. .++...--.++|..|+.+.+..+| .++.+ .+|+.|+++++.|+
T Consensus 133 i~----------~nf~~v~~~~~f~~l~~~~l~~ll---~~~~L~v~~E~~v~~av~~W~ 179 (534)
T PHA03098 133 IR----------NNIELIYNDPDFIYLSKNELIKIL---SDDKLNVSSEDVVLEIIIKWL 179 (534)
T ss_pred HH----------HHHHHHhcCchhhcCCHHHHHHHh---cCCCcCcCCHHHHHHHHHHHH
Confidence 10 001111224789999999999998 44443 46889999999998
No 6
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.69 E-value=4.4e-17 Score=142.34 Aligned_cols=104 Identities=23% Similarity=0.326 Sum_probs=91.3
Q ss_pred cccccCCCeeEEEEEc-CEEEEeccceeccCChHHHHhhCCC--CCCCcceEEecCCCCCHHHHHHHHHHhhCCceeec-
Q 007644 20 RTVISDAPSDLVIQVN-NIRYLLHKFPLLPKCGLLQRLCSDP--EDSDSVTIELHDIPGGEDAFELCAKFCYGITINLS- 95 (595)
Q Consensus 20 ~~r~~~~l~DVtl~V~-g~~F~lHK~vLas~S~YFr~Lf~~~--~e~~~~~I~L~d~pGGa~afelll~FcYg~~i~It- 95 (595)
.++.++.+||++|.|+ +.+|++||.+|+++|+||++||.+. .+....+|.+.+++ +++|+.+++|+|++.+.++
T Consensus 3 ~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~~ 80 (111)
T PF00651_consen 3 DLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVS--PEAFEAFLEYMYTGEIEINS 80 (111)
T ss_dssp HHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSC--HHHHHHHHHHHHHSEEEEE-
T ss_pred HHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccccccccccccccc--ccccccccccccCCcccCCH
Confidence 3566789999999999 7999999999999999999999987 33344578899998 7999999999999999998
Q ss_pred CCchhhHHHhhcccCcccccccchHHHHHHHHhHHh
Q 007644 96 AHNFVPAFCAAKFLRMAESVEKGNFILKLESFFHSC 131 (595)
Q Consensus 96 ~~NV~~LlcAA~~LqM~e~~~~gNL~~~ce~FL~~~ 131 (595)
.+|+..++.+|++|+|++ |...|++||.+.
T Consensus 81 ~~~~~~ll~lA~~~~~~~------L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKLQIPE------LKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHTTBHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHH------HHHHHHHHHHhC
Confidence 999999999999999995 999999999874
No 7
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.59 E-value=2e-15 Score=124.21 Aligned_cols=89 Identities=21% Similarity=0.322 Sum_probs=80.4
Q ss_pred eEEEEEcCEEEEeccceeccCChHHHHhhCCC-CCCCcceEEecCCCCCHHHHHHHHHHhhCCceeecCCchhhHHHhhc
Q 007644 29 DLVIQVNNIRYLLHKFPLLPKCGLLQRLCSDP-EDSDSVTIELHDIPGGEDAFELCAKFCYGITINLSAHNFVPAFCAAK 107 (595)
Q Consensus 29 DVtl~V~g~~F~lHK~vLas~S~YFr~Lf~~~-~e~~~~~I~L~d~pGGa~afelll~FcYg~~i~It~~NV~~LlcAA~ 107 (595)
||++.|+|+.|++||.+|+++|+||++||.+. .+.....+.+.+++ +++|+.+++|+|++++.+++.|+..++.+|+
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~--~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~ 78 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVS--PEDFRALLEFLYTGKLDLPEENVEELLELAD 78 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCC--HHHHHHHHHeecCceeecCHHHHHHHHHHHH
Confidence 78999999999999999999999999999975 34456788898877 7999999999999999999999999999999
Q ss_pred ccCcccccccchHHHHHH
Q 007644 108 FLRMAESVEKGNFILKLE 125 (595)
Q Consensus 108 ~LqM~e~~~~gNL~~~ce 125 (595)
+++|++ |+..|+
T Consensus 79 ~~~~~~------l~~~c~ 90 (90)
T smart00225 79 YLQIPG------LVELCE 90 (90)
T ss_pred HHCcHH------HHhhhC
Confidence 999996 777664
No 8
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.26 E-value=1.4e-11 Score=133.14 Aligned_cols=184 Identities=18% Similarity=0.229 Sum_probs=144.4
Q ss_pred cccccccccCCCeeEEEEEcC-----EEEEeccceeccCChHHHHhhCCC-CCCCcceEEecCCCCCHHHHHHHHHHhhC
Q 007644 16 EEATRTVISDAPSDLVIQVNN-----IRYLLHKFPLLPKCGLLQRLCSDP-EDSDSVTIELHDIPGGEDAFELCAKFCYG 89 (595)
Q Consensus 16 ~~~~~~r~~~~l~DVtl~V~g-----~~F~lHK~vLas~S~YFr~Lf~~~-~e~~~~~I~L~d~pGGa~afelll~FcYg 89 (595)
+.+.-+..+...+||++.|++ +.||+||++||..|.-|.+||.++ .+....+|+++|+. +.+|...++|+|+
T Consensus 103 er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdve--paaFl~~L~flYs 180 (521)
T KOG2075|consen 103 ERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVE--PAAFLAFLRFLYS 180 (521)
T ss_pred HhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcC--hhHhHHHHHHHhc
Confidence 345667778899999999973 799999999999999999999986 34446799999999 6999999999999
Q ss_pred CceeecCCchhhHHHhhcccCcccccccchHHHHHHHHhHHhhhcchhhHHHHHhhhhhHHHHHHhcCccccchHHHHHH
Q 007644 90 ITINLSAHNFVPAFCAAKFLRMAESVEKGNFILKLESFFHSCILEGWKDSIVTLKTTNKLSEWSENLGIIRRCIDSIVEK 169 (595)
Q Consensus 90 ~~i~It~~NV~~LlcAA~~LqM~e~~~~gNL~~~ce~FL~~~v~~sw~dsl~~L~~C~~L~~~Ae~~~iv~rcidsLa~k 169 (595)
-.+.+.++||..++.||.-.-++ .|...|.+||+..+..- +.+.-|.+|..+ .++-.+.++|++.|...
T Consensus 181 dev~~~~dtvi~tl~~AkKY~Vp------aLer~CVkflr~~l~~~--naf~~L~q~A~l---f~ep~Li~~c~e~id~~ 249 (521)
T KOG2075|consen 181 DEVKLAADTVITTLYAAKKYLVP------ALERQCVKFLRKNLMAD--NAFLELFQRAKL---FDEPSLISICLEVIDKS 249 (521)
T ss_pred chhhhhHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHhcCCh--HHHHHHHHHHHh---hcCHHHHHHHHHHhhhH
Confidence 99999999999999999776676 49999999999987653 556666666443 44556888888887544
Q ss_pred HhcCCCcccccccccCCCcccccccCCCCCceecccccCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHH
Q 007644 170 ILTPISKVSWSYTYTRPGYTQKRHQIAPKDWWTEDISELDIELFRCIVTAVRSTYM-LPPQLIGEALHVYA 239 (595)
Q Consensus 170 a~~~~~~~~~s~~~~~~~~~~~~~~~~~~~WW~EDl~~L~~d~f~rvI~am~s~g~-~~ee~V~~aL~~Ya 239 (595)
... .-..=||-|+-++ .+.|..|+ +.+.+ +++-.+++|+.+|+
T Consensus 250 ~~~-----------------------al~~EGf~did~~-~dt~~evl---~r~~l~~~e~~lfeA~lkw~ 293 (521)
T KOG2075|consen 250 FED-----------------------ALTPEGFCDIDST-RDTYEEVL---RRDTLEAREFRLFEAALKWA 293 (521)
T ss_pred HHh-----------------------hhCccceeehhhH-HHHHHHHH---hhcccchhHHHHHHHHHhhc
Confidence 321 0011245555444 89999999 44443 77889999999998
No 9
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.22 E-value=1.6e-11 Score=130.09 Aligned_cols=178 Identities=12% Similarity=0.176 Sum_probs=126.6
Q ss_pred ccccccCCCeeEEEEEcCEEEEeccceeccCChHHHHhhCCC-CCCCcceEEecCCCCCHHHHHHHHHHhhCCceeecCC
Q 007644 19 TRTVISDAPSDLVIQVNNIRYLLHKFPLLPKCGLLQRLCSDP-EDSDSVTIELHDIPGGEDAFELCAKFCYGITINLSAH 97 (595)
Q Consensus 19 ~~~r~~~~l~DVtl~V~g~~F~lHK~vLas~S~YFr~Lf~~~-~e~~~~~I~L~d~pGGa~afelll~FcYg~~i~It~~ 97 (595)
..++.....+||++.|+++.|++||.+||++|.|||+|+-++ .|+.+..|.|++-. ++||..+++|+|+|++.++..
T Consensus 36 ~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~--~eAF~~lLrYiYtg~~~l~~~ 113 (620)
T KOG4350|consen 36 DELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETN--SEAFRALLRYIYTGKIDLAGV 113 (620)
T ss_pred HHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhccccccccc--HHHHHHHHHHHhhcceecccc
Confidence 456778889999999999999999999999999999998875 78888889988754 799999999999999998764
Q ss_pred ch---hhHHHhhcccCcccccccchHHHHHHHHhHHhhhcchhhHHHHHhhhhhHHHHHHhcCccccchHHHHHHHhcCC
Q 007644 98 NF---VPAFCAAKFLRMAESVEKGNFILKLESFFHSCILEGWKDSIVTLKTTNKLSEWSENLGIIRRCIDSIVEKILTPI 174 (595)
Q Consensus 98 NV---~~LlcAA~~LqM~e~~~~gNL~~~ce~FL~~~v~~sw~dsl~~L~~C~~L~~~Ae~~~iv~rcidsLa~ka~~~~ 174 (595)
.- ...+.-|...++.+ |-....+||.+.+ .++|--.++..|--|++ ..|..-.+.
T Consensus 114 ~ed~lld~LslAh~Ygf~~------Le~aiSeYl~~iL---------~~~NvCmifdaA~ly~l-----~~Lt~~C~m-- 171 (620)
T KOG4350|consen 114 EEDILLDYLSLAHRYGFIQ------LETAISEYLKEIL---------KNENVCMIFDAAYLYQL-----TDLTDYCMM-- 171 (620)
T ss_pred hHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHH---------cccceeeeeeHHHHhcc-----hHHHHHHHH--
Confidence 33 34555566666664 8889999999877 44554445555655555 344333321
Q ss_pred CcccccccccCCCcccccccCCCCCceecccccCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHH
Q 007644 175 SKVSWSYTYTRPGYTQKRHQIAPKDWWTEDISELDIELFRCIVTAVRSTYM-LPPQLIGEALHVYA 239 (595)
Q Consensus 175 ~~~~~s~~~~~~~~~~~~~~~~~~~WW~EDl~~L~~d~f~rvI~am~s~g~-~~ee~V~~aL~~Ya 239 (595)
|.. ++..+.--.+.|..|+-+.++.++ ..+.. .+|..|+-|+..|-
T Consensus 172 ------fmD----------rnA~~lL~~~sFn~LSk~sL~e~l---~RDsFfApE~~IFlAv~~W~ 218 (620)
T KOG4350|consen 172 ------FMD----------RNADQLLEDPSFNRLSKDSLKELL---ARDSFFAPELKIFLAVRSWH 218 (620)
T ss_pred ------HHh----------cCHHhhhcCcchhhhhHHHHHHHH---hhhcccchHHHHHHHHHHHH
Confidence 110 001111222445678888888888 33333 56668888888885
No 10
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.96 E-value=6.9e-10 Score=109.01 Aligned_cols=168 Identities=18% Similarity=0.301 Sum_probs=125.7
Q ss_pred cCCCCccccc---ccccccccCCCeeEEEEEc---CEEEEeccceeccCChHHHHhhCCCCCCCcceEEecCCCCCHHHH
Q 007644 7 GTKPDTFYTE---EATRTVISDAPSDLVIQVN---NIRYLLHKFPLLPKCGLLQRLCSDPEDSDSVTIELHDIPGGEDAF 80 (595)
Q Consensus 7 g~~~~~f~~~---~~~~~r~~~~l~DVtl~V~---g~~F~lHK~vLas~S~YFr~Lf~~~~e~~~~~I~L~d~pGGa~af 80 (595)
.|.||+|-.+ =-.-+.....++||+++++ ++.+++||+|||++|++.+ |.+..+....+..+.|.. +++|
T Consensus 43 eSs~dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dekse~~~~dDad--~Ea~ 118 (280)
T KOG4591|consen 43 ESSPDSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKSEELDLDDAD--FEAF 118 (280)
T ss_pred cCCchhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcchhhhcccccC--HHHH
Confidence 4678888766 2344667789999999998 4789999999999999874 455443344556677776 7999
Q ss_pred HHHHHHhhCCceeecCCchh--hHHHhhcccCcccccccchHHHHHHHHhHHhhhcchhhHHHHHhhhhhHHHHHHhcCc
Q 007644 81 ELCAKFCYGITINLSAHNFV--PAFCAAKFLRMAESVEKGNFILKLESFFHSCILEGWKDSIVTLKTTNKLSEWSENLGI 158 (595)
Q Consensus 81 elll~FcYg~~i~It~~NV~--~LlcAA~~LqM~e~~~~gNL~~~ce~FL~~~v~~sw~dsl~~L~~C~~L~~~Ae~~~i 158 (595)
..+++++||-.|++..+.+. .|...|..+|+.- |.++|+.=|...+ ...||..++.+||+++.
T Consensus 119 ~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~------Lke~C~k~l~a~l---------~V~NCIk~Ye~AEe~n~ 183 (280)
T KOG4591|consen 119 HTAIRWIYTDEIDFKEDDEFLLELCELANRFQLEL------LKERCEKGLGALL---------HVDNCIKFYEFAEELNA 183 (280)
T ss_pred HHhheeeeccccccccchHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHh---------hHhhHHHHHHHHHHhhH
Confidence 99999999999998887765 4788899999984 8899999888777 77899999999999765
Q ss_pred cccchHHHHHHHhcCCCcccccccccCCCcccccccCCCCCceecccccCCHHHHHHHH
Q 007644 159 IRRCIDSIVEKILTPISKVSWSYTYTRPGYTQKRHQIAPKDWWTEDISELDIELFRCIV 217 (595)
Q Consensus 159 v~rcidsLa~ka~~~~~~~~~s~~~~~~~~~~~~~~~~~~~WW~EDl~~L~~d~f~rvI 217 (595)
|-+-..+..+-. ..| ++---+||+.+++.++-++|
T Consensus 184 --~qL~n~~~eiIA----~~W------------------~dL~~a~FaqMs~aLLYklI 218 (280)
T KOG4591|consen 184 --RQLMNVAAEIIA----GAW------------------DDLGKADFAQMSAALLYKLI 218 (280)
T ss_pred --HHHHHHHHHHHH----hhc------------------cccChHHHHhccHHHHHHHH
Confidence 111122221110 012 11224788999999999998
No 11
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.54 E-value=1.7e-07 Score=100.09 Aligned_cols=177 Identities=18% Similarity=0.226 Sum_probs=131.9
Q ss_pred ccccCCCeeEEEEEcCEEEEeccceeccCChHHHHhhCCC-CCCCcce--EEecCCCCCHHHHHHHHHHhhCCceeecCC
Q 007644 21 TVISDAPSDLVIQVNNIRYLLHKFPLLPKCGLLQRLCSDP-EDSDSVT--IELHDIPGGEDAFELCAKFCYGITINLSAH 97 (595)
Q Consensus 21 ~r~~~~l~DVtl~V~g~~F~lHK~vLas~S~YFr~Lf~~~-~e~~~~~--I~L~d~pGGa~afelll~FcYg~~i~It~~ 97 (595)
+..+|.-+||+|.+-|.+.++||.-| .-|+||..||.+. +|+.... ++|.|-.-...+|..++.=.|...|+|.++
T Consensus 63 lf~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~ 141 (488)
T KOG4682|consen 63 LFLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLS 141 (488)
T ss_pred HHhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccHH
Confidence 44578899999999999999999866 5599999999987 5665544 455543334799999999999999999999
Q ss_pred chhhHHHhhcccCcccccccchHHHHHHHHhHHhhhcchhhHHHHHhhhhhHHHHHHhcCccccchHHHHHHHhcCCCcc
Q 007644 98 NFVPAFCAAKFLRMAESVEKGNFILKLESFFHSCILEGWKDSIVTLKTTNKLSEWSENLGIIRRCIDSIVEKILTPISKV 177 (595)
Q Consensus 98 NV~~LlcAA~~LqM~e~~~~gNL~~~ce~FL~~~v~~sw~dsl~~L~~C~~L~~~Ae~~~iv~rcidsLa~ka~~~~~~~ 177 (595)
-|..+++||.+||+.. |+++|.+-+.+.+. .++.......+..||+ +++-.+..
T Consensus 142 dv~gvlAaA~~lqldg------l~qrC~evMie~ls---------pkta~~yYea~ckYgl-----e~vk~kc~------ 195 (488)
T KOG4682|consen 142 DVVGVLAAACLLQLDG------LIQRCGEVMIETLS---------PKTACGYYEAACKYGL-----ESVKKKCL------ 195 (488)
T ss_pred HHHHHHHHHHHHHHhh------HHHHHHHHHHHhcC---------hhhhhHhhhhhhhhhh-----HHHHHHHH------
Confidence 9999999999999995 99999999999994 4577888999999997 56655432
Q ss_pred cccccccCCCcccccccCCCCCceecccccCCHHHHHHHHHHHHhcCC--CC-hhhHHHHHHHHH
Q 007644 178 SWSYTYTRPGYTQKRHQIAPKDWWTEDISELDIELFRCIVTAVRSTYM--LP-PQLIGEALHVYA 239 (595)
Q Consensus 178 ~~s~~~~~~~~~~~~~~~~~~~WW~EDl~~L~~d~f~rvI~am~s~g~--~~-ee~V~~aL~~Ya 239 (595)
.|-....-+- .+. .-|-+++.+++..++ .+-++ +. |=-++..+..|.
T Consensus 196 ewl~~nl~~i------~~~------q~l~ei~~~Lm~~ll---~SpnLfvmq~EfdLyttlk~Wm 245 (488)
T KOG4682|consen 196 EWLLNNLMTI------QNV------QLLKEISINLMKQLL---GSPNLFVMQVEFDLYTTLKKWM 245 (488)
T ss_pred HHHHHhhHhh------hhH------HHHHhcCHHHHHHHh---CCCCeEEEEeeehHHHHHHHHH
Confidence 1211100000 000 134678999999998 55443 33 335677777776
No 12
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.25 E-value=7.7e-07 Score=101.53 Aligned_cols=127 Identities=19% Similarity=0.209 Sum_probs=97.3
Q ss_pred CCeeEEEEEcCEEEEeccceeccCChHHHHhhCCC-CCCCcceEEecCCCCCHHHHHHHHHHhhC-Cceeec-----CCc
Q 007644 26 APSDLVIQVNNIRYLLHKFPLLPKCGLLQRLCSDP-EDSDSVTIELHDIPGGEDAFELCAKFCYG-ITINLS-----AHN 98 (595)
Q Consensus 26 ~l~DVtl~V~g~~F~lHK~vLas~S~YFr~Lf~~~-~e~~~~~I~L~d~pGGa~afelll~FcYg-~~i~It-----~~N 98 (595)
..|||+++ +|+.|+|||.+|++++.||..||... .|+.. |...+.|--++.|+.++||.|. -++.+- .+=
T Consensus 711 ~d~~i~~K-DGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS--~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF 787 (1267)
T KOG0783|consen 711 MDTVIKLK-DGKVLKAHKCFLSARLEYFSSMFQFVWMESSS--ITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDF 787 (1267)
T ss_pred eeEEEEec-CCcCcccceeEeeeHHHHHHHHHHHHHhhhcc--ceeecCcchHHHHHHHHHHHHccchHHHHhccchhhh
Confidence 44565555 88999999999999999999999864 45444 4444555557999999999994 444331 223
Q ss_pred hhhHHHhhcccCcccccccchHHHHHHHHhHHhhhcchhhHHHHHhhhhhHHHHHHhcC---ccccchHHHHHHH
Q 007644 99 FVPAFCAAKFLRMAESVEKGNFILKLESFFHSCILEGWKDSIVTLKTTNKLSEWSENLG---IIRRCIDSIVEKI 170 (595)
Q Consensus 99 V~~LlcAA~~LqM~e~~~~gNL~~~ce~FL~~~v~~sw~dsl~~L~~C~~L~~~Ae~~~---iv~rcidsLa~ka 170 (595)
+..++..|+.|=+++ |...|+.-|.+.+ .|++|..|+.+|..|+ +-.+|+|-+...+
T Consensus 788 ~~~il~iaDqlli~~------Lk~Ice~~ll~kl---------~lk~~~~llefaamY~ak~L~~~C~dfic~N~ 847 (1267)
T KOG0783|consen 788 MFEILSIADQLLILE------LKSICEQSLLRKL---------NLKTLPTLLEFAAMYHAKELYSRCIDFICHNI 847 (1267)
T ss_pred hHHHHHHHHHHHHHH------HHHHHHHHHHhHh---------cccchHHHHHHHHHhhHHHHHHHHHHHHHHhH
Confidence 566788888888886 8999999999988 8999999999998886 4567887776543
No 13
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.21 E-value=2.5e-06 Score=97.50 Aligned_cols=65 Identities=28% Similarity=0.427 Sum_probs=54.5
Q ss_pred CCCeeEEEEEcCEEEEeccceeccCChHHHHhhCCCCC-------------CCcceEEecCCCCCHHHHHHHHHHhhCCc
Q 007644 25 DAPSDLVIQVNNIRYLLHKFPLLPKCGLLQRLCSDPED-------------SDSVTIELHDIPGGEDAFELCAKFCYGIT 91 (595)
Q Consensus 25 ~~l~DVtl~V~g~~F~lHK~vLas~S~YFr~Lf~~~~e-------------~~~~~I~L~d~pGGa~afelll~FcYg~~ 91 (595)
+-..|||+.||+.-|++||++|+++|++||+||-.... +....|.+.++| |.+||+++.|+||.+
T Consensus 556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~--p~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIP--PLMFEILLHYIYTDT 633 (1267)
T ss_pred cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCC--HHHHHHHHHHHhccc
Confidence 35679999999999999999999999999999975321 123456688999 599999999999875
No 14
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.84 E-value=1.6e-05 Score=83.68 Aligned_cols=93 Identities=19% Similarity=0.365 Sum_probs=77.2
Q ss_pred EEEEEcC------EEEEeccceeccCChHHHHhhCC----CCCCCcceEEec-CCCCCHHHHHHHHHHhhCCceeecCCc
Q 007644 30 LVIQVNN------IRYLLHKFPLLPKCGLLQRLCSD----PEDSDSVTIELH-DIPGGEDAFELCAKFCYGITINLSAHN 98 (595)
Q Consensus 30 Vtl~V~g------~~F~lHK~vLas~S~YFr~Lf~~----~~e~~~~~I~L~-d~pGGa~afelll~FcYg~~i~It~~N 98 (595)
|+|+|-| +.|.|.+.+|.+.=+||+..+.. ..+.....|.++ |+ .+|+-+++|+++....||+.|
T Consensus 1 v~ihV~De~~~~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv----~iF~WLm~yv~~~~p~l~~~N 76 (317)
T PF11822_consen 1 VVIHVCDEARNEKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDV----HIFEWLMRYVKGEPPSLTPSN 76 (317)
T ss_pred CEEEEEcCCCCcceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecCh----hHHHHHHHHhhcCCCcCCcCc
Confidence 4666622 68999999999999999999953 223333445554 77 599999999999999999999
Q ss_pred hhhHHHhhcccCcccccccchHHHHHHHHhHHhh
Q 007644 99 FVPAFCAAKFLRMAESVEKGNFILKLESFFHSCI 132 (595)
Q Consensus 99 V~~LlcAA~~LqM~e~~~~gNL~~~ce~FL~~~v 132 (595)
|++++-.|+||||++ |++.|-.|+...+
T Consensus 77 vvsIliSS~FL~M~~------Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 77 VVSILISSEFLQMES------LVEECLQYCHDHM 104 (317)
T ss_pred EEEeEehhhhhccHH------HHHHHHHHHHHhH
Confidence 999999999999996 9999999997765
No 15
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.54 E-value=0.0021 Score=57.08 Aligned_cols=79 Identities=11% Similarity=0.250 Sum_probs=59.7
Q ss_pred EEEEE-cCEEEEeccceeccCChHHHHhhCCCC--CCCcceEEecCCCCCHHHHHHHHHHhhCCc-----------e---
Q 007644 30 LVIQV-NNIRYLLHKFPLLPKCGLLQRLCSDPE--DSDSVTIELHDIPGGEDAFELCAKFCYGIT-----------I--- 92 (595)
Q Consensus 30 Vtl~V-~g~~F~lHK~vLas~S~YFr~Lf~~~~--e~~~~~I~L~d~pGGa~afelll~FcYg~~-----------i--- 92 (595)
|+|.- +|..|.+.+.+. ..|+-++.|+.+.. +.....|.|++++| .+++.+++||+--+ +
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~--~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTS--KILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCH--HHHHHHHHHHHHcccCCCCccccccccHH
Confidence 55554 779999999854 68999999998642 11225799999995 99999999998321 0
Q ss_pred -----eecCCchhhHHHhhcccCc
Q 007644 93 -----NLSAHNFVPAFCAAKFLRM 111 (595)
Q Consensus 93 -----~It~~NV~~LlcAA~~LqM 111 (595)
.+..+++..|+.||+||++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1555678889999999985
No 16
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=96.19 E-value=0.0027 Score=54.99 Aligned_cols=81 Identities=19% Similarity=0.182 Sum_probs=60.7
Q ss_pred EEEEEcCEEEEeccceec-cCChHHHHhhCCC----CCCCcceEEecCCCCCHHHHHHHHHHhhC-Cceeec-CCchhhH
Q 007644 30 LVIQVNNIRYLLHKFPLL-PKCGLLQRLCSDP----EDSDSVTIELHDIPGGEDAFELCAKFCYG-ITINLS-AHNFVPA 102 (595)
Q Consensus 30 Vtl~V~g~~F~lHK~vLa-s~S~YFr~Lf~~~----~e~~~~~I~L~d~pGGa~afelll~FcYg-~~i~It-~~NV~~L 102 (595)
|+|.|||+.|.+-+..|. ....+|.+|+... .......+-| |=+ |+.|+.|++|.-+ +.+... ...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRd--p~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRD--PELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS---HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccC--hhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 689999999999999998 5567999999853 1223445655 334 6999999999999 777764 6677889
Q ss_pred HHhhcccCccc
Q 007644 103 FCAAKFLRMAE 113 (595)
Q Consensus 103 lcAA~~LqM~e 113 (595)
+..|+|.++.+
T Consensus 78 ~~Ea~fy~l~~ 88 (94)
T PF02214_consen 78 LEEAEFYGLDE 88 (94)
T ss_dssp HHHHHHHT-HH
T ss_pred HHHHHHcCCCc
Confidence 99999999986
No 17
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=95.83 E-value=0.03 Score=57.17 Aligned_cols=94 Identities=16% Similarity=0.195 Sum_probs=74.7
Q ss_pred EEEEEcCEEEEeccceeccCChHHHHhhCCCC--CCCcc-eEEecCCCCCHHHHHHHHHHhhCCceee--cCCchhhHHH
Q 007644 30 LVIQVNNIRYLLHKFPLLPKCGLLQRLCSDPE--DSDSV-TIELHDIPGGEDAFELCAKFCYGITINL--SAHNFVPAFC 104 (595)
Q Consensus 30 Vtl~V~g~~F~lHK~vLas~S~YFr~Lf~~~~--e~~~~-~I~L~d~pGGa~afelll~FcYg~~i~I--t~~NV~~Llc 104 (595)
|.+.|||..|...|.-|--..|||+.|+.... +.+.. .|-| |=+ |.=|++|+.|+=.|.+.+ +..++.+|+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRS--pKHF~~ILNfmRdGdv~LPe~~kel~El~~ 83 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRS--PKHFDTILNFMRDGDVDLPESEKELKELLR 83 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCC--hhHHHHHHHhhhcccccCccchHHHHHHHH
Confidence 45889999999999999999999999999753 22222 3444 334 599999999999777665 4566778999
Q ss_pred hhcccCcccccccchHHHHHHHHhHHhh
Q 007644 105 AAKFLRMAESVEKGNFILKLESFFHSCI 132 (595)
Q Consensus 105 AA~~LqM~e~~~~gNL~~~ce~FL~~~v 132 (595)
=|+|..+++ |++.|..=+....
T Consensus 84 EA~fYlL~~------Lv~~C~~~i~~~~ 105 (230)
T KOG2716|consen 84 EAEFYLLDG------LVELCQSAIARLI 105 (230)
T ss_pred HHHHhhHHH------HHHHHHHHhhhcc
Confidence 999999996 9999998776653
No 18
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=95.38 E-value=0.035 Score=49.68 Aligned_cols=73 Identities=15% Similarity=0.379 Sum_probs=59.2
Q ss_pred cCEEEEeccceeccCChHHHHhhCCC---CCCCcceEEecCCCCCHHHHHHHHHHh-----hCC------ceeecCCchh
Q 007644 35 NNIRYLLHKFPLLPKCGLLQRLCSDP---EDSDSVTIELHDIPGGEDAFELCAKFC-----YGI------TINLSAHNFV 100 (595)
Q Consensus 35 ~g~~F~lHK~vLas~S~YFr~Lf~~~---~e~~~~~I~L~d~pGGa~afelll~Fc-----Yg~------~i~It~~NV~ 100 (595)
+|.+|-+-|. .|.-||-+|+|+.+. .+....+|.+.+|| +..++.+..|. |++ +++|-|+=+.
T Consensus 25 Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~--shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ippemal 101 (112)
T KOG3473|consen 25 DDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIP--SHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMAL 101 (112)
T ss_pred CCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccch--HHHHHHHHHHhhheeeeccccccCCCCCCCHHHHH
Confidence 5689999666 788899999999974 35556789999999 79999988875 443 3567788888
Q ss_pred hHHHhhcccC
Q 007644 101 PAFCAAKFLR 110 (595)
Q Consensus 101 ~LlcAA~~Lq 110 (595)
.|+.||+||+
T Consensus 102 eLL~aAn~Le 111 (112)
T KOG3473|consen 102 ELLMAANYLE 111 (112)
T ss_pred HHHHHhhhhc
Confidence 9999999996
No 19
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=94.92 E-value=0.086 Score=42.84 Aligned_cols=55 Identities=11% Similarity=0.263 Sum_probs=43.4
Q ss_pred EEEEE-cCEEEEeccceeccCChHHHHhhCCCCCCCcceEEecCCCCCHHHHHHHHHHhh
Q 007644 30 LVIQV-NNIRYLLHKFPLLPKCGLLQRLCSDPEDSDSVTIELHDIPGGEDAFELCAKFCY 88 (595)
Q Consensus 30 Vtl~V-~g~~F~lHK~vLas~S~YFr~Lf~~~~e~~~~~I~L~d~pGGa~afelll~FcY 88 (595)
|+|.- +|+.|.+.+. .|..|+.++.|+.+...... .|.|++++ +.+++.+++||+
T Consensus 3 v~L~SsDg~~f~V~~~-~a~~S~~i~~ml~~~~~~~~-~Ipl~~v~--~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSRE-AAKQSKTIKNMLEDLGDEDE-PIPLPNVS--SRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHH-HHTTSHHHHHHHHCTCCCGT-EEEETTS---HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHH-HHHHhHHHHHHHhhhccccc-ccccCccC--HHHHHHHHHHHH
Confidence 45554 6799999888 55689999999987543333 79999999 599999999997
No 20
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=94.48 E-value=0.024 Score=59.08 Aligned_cols=98 Identities=16% Similarity=0.150 Sum_probs=68.7
Q ss_pred CcccccccccccccCCCeeEEEEEcCEEEEeccceeccCChHHHHhhCCCCCCC---cceEEecCCCCCHHHHHHHHHHh
Q 007644 11 DTFYTEEATRTVISDAPSDLVIQVNNIRYLLHKFPLLPKCGLLQRLCSDPEDSD---SVTIELHDIPGGEDAFELCAKFC 87 (595)
Q Consensus 11 ~~f~~~~~~~~r~~~~l~DVtl~V~g~~F~lHK~vLas~S~YFr~Lf~~~~e~~---~~~I~L~d~pGGa~afelll~Fc 87 (595)
.+|+++= .-........||-|......|++||+.|+++|++|+-+.....+.. ...|..-+|. -++|+..+.+.
T Consensus 115 ~sf~kD~-ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~d--m~~feafLh~l 191 (401)
T KOG2838|consen 115 NSFLKDF-ADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFD--MDAFEAFLHSL 191 (401)
T ss_pred hHHHHHH-hhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccC--hHHHHHHHHHH
Confidence 4455542 2223345778999999999999999999999999999887654332 2456666777 58999999999
Q ss_pred hCCcee---ecCCchhhHHHhhcccCc
Q 007644 88 YGITIN---LSAHNFVPAFCAAKFLRM 111 (595)
Q Consensus 88 Yg~~i~---It~~NV~~LlcAA~~LqM 111 (595)
|++..- +.-.|+..|-.-.+-++-
T Consensus 192 ~tgEfgmEd~~fqn~diL~QL~edFG~ 218 (401)
T KOG2838|consen 192 ITGEFGMEDLGFQNSDILEQLCEDFGC 218 (401)
T ss_pred HhcccchhhcCCchHHHHHHHHHhhCC
Confidence 998653 334555555444443443
No 21
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=0.081 Score=51.43 Aligned_cols=90 Identities=8% Similarity=0.111 Sum_probs=69.6
Q ss_pred EcCEEEEeccceeccCChHHHHhhCCCC-CCCcceEEecCCCCCHHHHHHHHHHhhCCce--------------------
Q 007644 34 VNNIRYLLHKFPLLPKCGLLQRLCSDPE-DSDSVTIELHDIPGGEDAFELCAKFCYGITI-------------------- 92 (595)
Q Consensus 34 V~g~~F~lHK~vLas~S~YFr~Lf~~~~-e~~~~~I~L~d~pGGa~afelll~FcYg~~i-------------------- 92 (595)
-+|+.|.+-.. .|..|.-++.++.+.. ......|.|++|. +.+|..|+.|||--+-
T Consensus 12 sDG~~f~ve~~-~a~~s~~i~~~~~~~~~~~~~~~IPl~nV~--~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~W 88 (162)
T KOG1724|consen 12 SDGEIFEVEEE-VARQSQTISAHMIEDGCADENDPIPLPNVT--SKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEW 88 (162)
T ss_pred cCCceeehhHH-HHHHhHHHHHHHHHcCCCccCCccccCccC--HHHHHHHHHHHHHcccccccccccccccccCCccHH
Confidence 37789999877 5677899999887542 1111578899998 4999999999996321
Q ss_pred -----eecCCchhhHHHhhcccCcccccccchHHHHHHHHhHHhh
Q 007644 93 -----NLSAHNFVPAFCAAKFLRMAESVEKGNFILKLESFFHSCI 132 (595)
Q Consensus 93 -----~It~~NV~~LlcAA~~LqM~e~~~~gNL~~~ce~FL~~~v 132 (595)
.+...++..|.-||.||+|+. |+..||......+
T Consensus 89 D~~Flk~d~~tLfdli~AAnyLdi~g------Ll~~~ck~va~mi 127 (162)
T KOG1724|consen 89 DAEFLKVDQGTLFDLILAANYLDIKG------LLDLTCKTVANMI 127 (162)
T ss_pred HHHHHhcCHHHHHHHHHHhhhcccHH------HHHHHHHHHHHHH
Confidence 133457889999999999994 9999999998876
No 22
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=84.79 E-value=0.62 Score=40.03 Aligned_cols=68 Identities=15% Similarity=0.157 Sum_probs=45.4
Q ss_pred hhhHHHHHHhcCccccchHHHHHHHhcCCCcccccccccCCCcccccccCCCCCceecccccCCHHHHHHHHHHHHhcCC
Q 007644 146 TNKLSEWSENLGIIRRCIDSIVEKILTPISKVSWSYTYTRPGYTQKRHQIAPKDWWTEDISELDIELFRCIVTAVRSTYM 225 (595)
Q Consensus 146 C~~L~~~Ae~~~iv~rcidsLa~ka~~~~~~~~~s~~~~~~~~~~~~~~~~~~~WW~EDl~~L~~d~f~rvI~am~s~g~ 225 (595)
|.+++.+|+.+++ ..|..++.. |.. .++......+++..||.+.+..++ .+..+
T Consensus 1 C~~i~~~A~~~~~-----~~L~~~~~~--------~i~----------~nf~~v~~~~~f~~L~~~~l~~iL---~~~~l 54 (103)
T PF07707_consen 1 CLSIYRLAEKYGL-----EELAEACLR--------FIA----------KNFNEVSKSDEFLELPFDQLIEIL---SSDDL 54 (103)
T ss_dssp HHHHHHHHHHTT------HHHHHHHHH--------HHH----------HTHHHHTTSHHHHCS-HHHHHHHH---HTSS-
T ss_pred ChhHHHHHHHcCh-----HHHHHHHHH--------HHH----------HHHHHHccchhhhcCCHHHHHHHH---hcccc
Confidence 7888999999987 566666541 110 112222335789999999999999 44443
Q ss_pred --CChhhHHHHHHHHH
Q 007644 226 --LPPQLIGEALHVYA 239 (595)
Q Consensus 226 --~~ee~V~~aL~~Ya 239 (595)
.+|..|.++++.|+
T Consensus 55 ~v~~E~~v~~av~~W~ 70 (103)
T PF07707_consen 55 NVSSEDDVFEAVLRWL 70 (103)
T ss_dssp -ECTCCCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHH
Confidence 46779999999998
No 23
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=79.16 E-value=2.1 Score=45.02 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=39.8
Q ss_pred EEEeccceeccCChHHHHhhCC----CCC------CCcceEEecC--CCCCHHHHHH-HHHHhhCCceeec
Q 007644 38 RYLLHKFPLLPKCGLLQRLCSD----PED------SDSVTIELHD--IPGGEDAFEL-CAKFCYGITINLS 95 (595)
Q Consensus 38 ~F~lHK~vLas~S~YFr~Lf~~----~~e------~~~~~I~L~d--~pGGa~afel-ll~FcYg~~i~It 95 (595)
++.+||.+.+++|++||.++.. ..| ....+|.+.. || .+|.. ++.|+||-.++++
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~P---kafA~i~lhclYTD~lDlS 329 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFP---KAFAPIFLHCLYTDRLDLS 329 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcc---hhhhhhhhhhheecccchh
Confidence 6889999999999999998752 111 2345677654 44 67765 5688899888765
No 24
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=71.78 E-value=8.3 Score=42.95 Aligned_cols=81 Identities=15% Similarity=0.036 Sum_probs=59.0
Q ss_pred EEEEEcCEEEEeccceeccCC--hHHHHhhCCCC--CCCcc-eEEecCCCCCHHHHHHHHHHhhCCceeecCCchhh-HH
Q 007644 30 LVIQVNNIRYLLHKFPLLPKC--GLLQRLCSDPE--DSDSV-TIELHDIPGGEDAFELCAKFCYGITINLSAHNFVP-AF 103 (595)
Q Consensus 30 Vtl~V~g~~F~lHK~vLas~S--~YFr~Lf~~~~--e~~~~-~I~L~d~pGGa~afelll~FcYg~~i~It~~NV~~-Ll 103 (595)
|.+.|||+.|.--+.-|+... .+|.+|+++.. ..... -|-| |= .|+.|..+++|.-|+.+.+..--... |+
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI-DR--DPdlFaviLn~LRTg~L~~~g~~~~~llh 89 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI-DR--DPDLFAVILNLLRTGDLDASGVFPERLLH 89 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe-cC--CchHHHHHHHHHhcCCCCCccCchhhhhh
Confidence 568899999999998887765 79999998532 22222 2333 22 25999999999999999995433333 44
Q ss_pred HhhcccCccc
Q 007644 104 CAAKFLRMAE 113 (595)
Q Consensus 104 cAA~~LqM~e 113 (595)
-=|.|.++++
T Consensus 90 dEA~fYGl~~ 99 (465)
T KOG2714|consen 90 DEAMFYGLTP 99 (465)
T ss_pred hhhhhcCcHH
Confidence 4889999996
No 25
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=70.28 E-value=0.7 Score=50.41 Aligned_cols=91 Identities=13% Similarity=-0.066 Sum_probs=54.9
Q ss_pred cccccccCC--CeeEEEEE-cCEEEEeccceeccCChHHHHhhCCCCCCCcceE-EecCCCCCHHHHHHHHHHhhCCcee
Q 007644 18 ATRTVISDA--PSDLVIQV-NNIRYLLHKFPLLPKCGLLQRLCSDPEDSDSVTI-ELHDIPGGEDAFELCAKFCYGITIN 93 (595)
Q Consensus 18 ~~~~r~~~~--l~DVtl~V-~g~~F~lHK~vLas~S~YFr~Lf~~~~e~~~~~I-~L~d~pGGa~afelll~FcYg~~i~ 93 (595)
+.-++.+++ ..|++..+ +|..|-+||+.|+++|.||..-+....-+ ..+| .+.-++ .+|+..++|.|-..-.
T Consensus 138 ~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~-~heI~~~~v~~---~~f~~flk~lyl~~na 213 (516)
T KOG0511|consen 138 QSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQ-GHEIEAHRVIL---SAFSPFLKQLYLNTNA 213 (516)
T ss_pred HHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhccc-cCchhhhhhhH---hhhhHHHHHHHHhhhh
Confidence 445666655 44777765 77999999999999998876544322111 1233 333444 8999999999965222
Q ss_pred ecCCchhhHHHhhcccCcc
Q 007644 94 LSAHNFVPAFCAAKFLRMA 112 (595)
Q Consensus 94 It~~NV~~LlcAA~~LqM~ 112 (595)
+-+.--.+|+.-..-++..
T Consensus 214 ~~~~qynallsi~~kF~~e 232 (516)
T KOG0511|consen 214 EWKDQYNALLSIEVKFSKE 232 (516)
T ss_pred hhhhHHHHHHhhhhhccHH
Confidence 2222224455444444443
No 26
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=68.97 E-value=19 Score=34.26 Aligned_cols=117 Identities=12% Similarity=0.142 Sum_probs=77.9
Q ss_pred EEEE-EcCEEEEeccceeccCChHHHHhhCCCCCCCcceEEecCCCCCHHHHHHHHHHhhCCceeec-------------
Q 007644 30 LVIQ-VNNIRYLLHKFPLLPKCGLLQRLCSDPEDSDSVTIELHDIPGGEDAFELCAKFCYGITINLS------------- 95 (595)
Q Consensus 30 Vtl~-V~g~~F~lHK~vLas~S~YFr~Lf~~~~e~~~~~I~L~d~pGGa~afelll~FcYg~~i~It------------- 95 (595)
|.|. .+|+.|.+.+. .|-+|=.++.|+....+.+ ..+.++++. +..|..+.+||---+=..+
T Consensus 4 i~l~s~dge~F~vd~~-iAerSiLikN~l~d~~~~n-~p~p~pnVr--Ssvl~kv~ew~ehh~~s~sede~d~~~rks~p 79 (158)
T COG5201 4 IELESIDGEIFRVDEN-IAERSILIKNMLCDSTACN-YPIPAPNVR--SSVLMKVQEWMEHHTSSLSEDENDLEIRKSKP 79 (158)
T ss_pred eEEEecCCcEEEehHH-HHHHHHHHHHHhccccccC-CCCcccchh--HHHHHHHHHHHHhccccCCCccChHhhhccCC
Confidence 4443 57899999887 7889999999988654432 234455665 6899999999963211111
Q ss_pred ------------CCchhhHHHhhcccCcccccccchHHHHHHHHhHHhhhcchhhHHHHHhhhhhHHHHHHhcCccccch
Q 007644 96 ------------AHNFVPAFCAAKFLRMAESVEKGNFILKLESFFHSCILEGWKDSIVTLKTTNKLSEWSENLGIIRRCI 163 (595)
Q Consensus 96 ------------~~NV~~LlcAA~~LqM~e~~~~gNL~~~ce~FL~~~v~~sw~dsl~~L~~C~~L~~~Ae~~~iv~rci 163 (595)
..-...+.-||.||++.. |++.||.-..+.+-. ++- -.+++.++|+..+-
T Consensus 80 ~D~wdr~Fm~vDqemL~eI~laaNYL~ikp------LLd~gCKivaemirg---------kSp---eeir~tfni~ndfT 141 (158)
T COG5201 80 SDFWDRFFMEVDQEMLLEICLAANYLEIKP------LLDLGCKIVAEMIRG---------KSP---EEIRETFNIENDFT 141 (158)
T ss_pred ccHHHHHHHHhhHHHHHHHHHhhccccchH------HHHHHHHHHHHHHcc---------CCH---HHHHHHhCCCCCCC
Confidence 112345778999999996 999999988887722 233 34566777766555
Q ss_pred HHHHH
Q 007644 164 DSIVE 168 (595)
Q Consensus 164 dsLa~ 168 (595)
+.=-.
T Consensus 142 pEEe~ 146 (158)
T COG5201 142 PEEER 146 (158)
T ss_pred HHHHH
Confidence 44333
No 27
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=68.77 E-value=28 Score=37.48 Aligned_cols=90 Identities=14% Similarity=0.184 Sum_probs=64.4
Q ss_pred cccCCCeeEEEEEcCEEEEeccceeccCCh-HHHHhhCCC----CCCCcceEEe-cCCCCCHHHHHHHHHHhhCCceeec
Q 007644 22 VISDAPSDLVIQVNNIRYLLHKFPLLPKCG-LLQRLCSDP----EDSDSVTIEL-HDIPGGEDAFELCAKFCYGITINLS 95 (595)
Q Consensus 22 r~~~~l~DVtl~V~g~~F~lHK~vLas~S~-YFr~Lf~~~----~e~~~~~I~L-~d~pGGa~afelll~FcYg~~i~It 95 (595)
+..|-.--+++.|++..|..-+++|-+.-. -+-.||..+ ......+.++ .|+. ...|..+++|--+|.|.--
T Consensus 90 ~~pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~--s~vFRAILdYYksG~iRCP 167 (438)
T KOG3840|consen 90 CSPGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMT--SSCFRAILDYYQSGTMRCP 167 (438)
T ss_pred CCCCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchh--HHHHHHHHHHHhcCceeCC
Confidence 556666678999999999999998877532 234566642 1222334444 4564 6899999999888888754
Q ss_pred C-CchhhHHHhhcccCccc
Q 007644 96 A-HNFVPAFCAAKFLRMAE 113 (595)
Q Consensus 96 ~-~NV~~LlcAA~~LqM~e 113 (595)
+ -.|-.|+.|.+||-++=
T Consensus 168 ~~vSvpELrEACDYLlipF 186 (438)
T KOG3840|consen 168 SSVSVSELREACDYLLVPF 186 (438)
T ss_pred CCCchHHHHhhcceEEeec
Confidence 3 56788999999998874
No 28
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=66.00 E-value=4.1 Score=34.33 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=27.8
Q ss_pred cccccCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 007644 203 EDISELDIELFRCIVTAVRSTYMLPPQLIGEALHVYA 239 (595)
Q Consensus 203 EDl~~L~~d~f~rvI~am~s~g~~~ee~V~~aL~~Ya 239 (595)
+++..||.+.+..+|..-.-.. ..|..|+++++.|+
T Consensus 35 ~~f~~L~~~~l~~iL~~d~l~v-~~E~~v~~av~~W~ 70 (101)
T smart00875 35 EEFLELSLEQLLSLLSSDDLNV-PSEEEVFEAVLRWV 70 (101)
T ss_pred cHHhcCCHHHHHHHhCcccCCC-CCHHHHHHHHHHHH
Confidence 7889999999999994333211 46778999999998
No 29
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=65.06 E-value=3 Score=35.45 Aligned_cols=33 Identities=12% Similarity=0.234 Sum_probs=27.3
Q ss_pred ecCCchhhHHHhhcccCcccccccchHHHHHHHHhHHhh
Q 007644 94 LSAHNFVPAFCAAKFLRMAESVEKGNFILKLESFFHSCI 132 (595)
Q Consensus 94 It~~NV~~LlcAA~~LqM~e~~~~gNL~~~ce~FL~~~v 132 (595)
++...+..|+.||.||+|.. |++.|+.++...+
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~------L~~~~~~~iA~~i 43 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKG------LLDLCCKYIANMI 43 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HH------HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcchH------HHHHHHHHHHHHh
Confidence 35568899999999999995 9999999998876
No 30
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=64.33 E-value=6.2 Score=43.38 Aligned_cols=74 Identities=15% Similarity=0.139 Sum_probs=55.4
Q ss_pred EEEEeccceeccCChHHHHhhCCC-CCCC-cce---EEecCCCCCHHHHHHHHHHhhCCceeecCCchhhHHHhhcccCc
Q 007644 37 IRYLLHKFPLLPKCGLLQRLCSDP-EDSD-SVT---IELHDIPGGEDAFELCAKFCYGITINLSAHNFVPAFCAAKFLRM 111 (595)
Q Consensus 37 ~~F~lHK~vLas~S~YFr~Lf~~~-~e~~-~~~---I~L~d~pGGa~afelll~FcYg~~i~It~~NV~~LlcAA~~LqM 111 (595)
..+|+|..++ ++..||+.||++. .|+. ... ..++.+. ....|.+++|.|+-+-+|-+.-...++--|..|-+
T Consensus 301 ~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~--~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal 377 (516)
T KOG0511|consen 301 DRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSLA--DVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLAL 377 (516)
T ss_pred ccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchHH--HHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhh
Confidence 4599999976 5678999999985 4421 222 2333343 47889999999999999988888888888888877
Q ss_pred cc
Q 007644 112 AE 113 (595)
Q Consensus 112 ~e 113 (595)
..
T Consensus 378 ~~ 379 (516)
T KOG0511|consen 378 AD 379 (516)
T ss_pred hh
Confidence 64
No 31
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=59.52 E-value=35 Score=35.42 Aligned_cols=89 Identities=15% Similarity=0.200 Sum_probs=66.6
Q ss_pred eEEEEEcCEEEEeccceeccCC--hHHHHhhCCC-C---CCCcceEEecCCCCCHHHHHHHHHHhhCCce-eecCCchhh
Q 007644 29 DLVIQVNNIRYLLHKFPLLPKC--GLLQRLCSDP-E---DSDSVTIELHDIPGGEDAFELCAKFCYGITI-NLSAHNFVP 101 (595)
Q Consensus 29 DVtl~V~g~~F~lHK~vLas~S--~YFr~Lf~~~-~---e~~~~~I~L~d~pGGa~afelll~FcYg~~i-~It~~NV~~ 101 (595)
=|.+.+||+.|.--..-|.-+= .-+-+||.+. . +.++.-+-| |=+ |.-||-++.|.-.|.+ ..+.-|+..
T Consensus 10 ~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI-DRs--p~yFepIlNyLr~Gq~~~~s~i~~lg 86 (302)
T KOG1665|consen 10 MVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI-DRS--PKYFEPILNYLRDGQIPSLSDIDCLG 86 (302)
T ss_pred hheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE-ccC--chhhHHHHHHHhcCceeecCCccHHH
Confidence 3678899999998888777774 4678899863 2 223333444 333 4899999999998765 567789999
Q ss_pred HHHhhcccCcccccccchHHHHHHH
Q 007644 102 AFCAAKFLRMAESVEKGNFILKLES 126 (595)
Q Consensus 102 LlcAA~~LqM~e~~~~gNL~~~ce~ 126 (595)
++.+|.|+|+-. |++..+.
T Consensus 87 vLeeArff~i~s------L~~hle~ 105 (302)
T KOG1665|consen 87 VLEEARFFQILS------LKDHLED 105 (302)
T ss_pred HHHHhhHHhhHh------HHhHHhh
Confidence 999999999984 7766665
No 32
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=58.56 E-value=5.3 Score=35.41 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=32.7
Q ss_pred cCcccccccchhhHHHHHHHhhCCCCCHHHHhhhhcccccCCC
Q 007644 417 LPAIARGKHDDLYKFINIYLKEHPELSKTERKRLCRILDCQKL 459 (595)
Q Consensus 417 lPd~AR~~hDgLYRAIDiYLKaHp~Lse~Er~~lCr~ldcqKL 459 (595)
+|++.......+|+|+..||.+....+. .|.++++.-|.+.+
T Consensus 30 I~E~~g~~~N~ly~a~~~YL~s~~s~~a-~rL~~~~~~~~~~~ 71 (98)
T PF14363_consen 30 IPEFDGLSRNELYDAAQAYLSSKISPSA-RRLKASKSKNSKNL 71 (98)
T ss_pred EEeCCCccccHHHHHHHHHHhhccCccc-ceeeecccCCCCce
Confidence 4444456788999999999999987776 88888887776654
No 33
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=57.29 E-value=8.7 Score=39.74 Aligned_cols=89 Identities=18% Similarity=0.144 Sum_probs=62.9
Q ss_pred CEEEEeccceeccCChHHHHhhCCCC-CCCcceEEecCCCCCHHHHHHHHHHhhCCceeecCCchh---hHHHhhcccCc
Q 007644 36 NIRYLLHKFPLLPKCGLLQRLCSDPE-DSDSVTIELHDIPGGEDAFELCAKFCYGITINLSAHNFV---PAFCAAKFLRM 111 (595)
Q Consensus 36 g~~F~lHK~vLas~S~YFr~Lf~~~~-e~~~~~I~L~d~pGGa~afelll~FcYg~~i~It~~NV~---~LlcAA~~LqM 111 (595)
+..+..|+.+++++|+-|+.|+.... +.....+.+.+.. ++.++.+..|.|...-.-+..++. +++++|...+-
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~--~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~ 186 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEK--PEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKN 186 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccc--hhhHhhhceEEEeccchHHHHHhhcCChhhhhcccccc
Confidence 45599999999999999999988642 2222334555554 588888899999854333334443 67777766666
Q ss_pred ccccccchHHHHHHHHhHHhh
Q 007644 112 AESVEKGNFILKLESFFHSCI 132 (595)
Q Consensus 112 ~e~~~~gNL~~~ce~FL~~~v 132 (595)
. .|...|...|.+.+
T Consensus 187 ~------~lk~~~~~~l~~~~ 201 (297)
T KOG1987|consen 187 R------HLKLACMPVLLSLI 201 (297)
T ss_pred H------HHHHHHHHHHHHHH
Confidence 6 48889999988765
No 34
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=52.68 E-value=48 Score=37.65 Aligned_cols=94 Identities=14% Similarity=0.067 Sum_probs=59.9
Q ss_pred CCCeeEEEEEcCEEEEeccceeccC-ChHHHHhhCCC-C----------CCCcceEEecCCCCCHHHHHHHHHHhhCCce
Q 007644 25 DAPSDLVIQVNNIRYLLHKFPLLPK-CGLLQRLCSDP-E----------DSDSVTIELHDIPGGEDAFELCAKFCYGITI 92 (595)
Q Consensus 25 ~~l~DVtl~V~g~~F~lHK~vLas~-S~YFr~Lf~~~-~----------e~~~~~I~L~d~pGGa~afelll~FcYg~~i 92 (595)
....=|+|.|||..+.+-+..|... =.++.++.... . +....+.-+.-- |.+|..+++|-+||++
T Consensus 28 ~~~~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfFDR~---P~~F~~Vl~fYrtGkL 104 (477)
T KOG3713|consen 28 ALDRRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFFDRH---PGAFAYVLNFYRTGKL 104 (477)
T ss_pred CcCcEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeeeccC---hHHHHHHHHHHhcCee
Confidence 3445688999999999988877662 12333443311 0 122334444333 5799999999999999
Q ss_pred eecCCchhhHHHh--hcccCcccccccchHHHHHHHH
Q 007644 93 NLSAHNFVPAFCA--AKFLRMAESVEKGNFILKLESF 127 (595)
Q Consensus 93 ~It~~NV~~LlcA--A~~LqM~e~~~~gNL~~~ce~F 127 (595)
.. |.||..+.=. -+|-++.+ +-++.||.-
T Consensus 105 H~-p~~vC~~~F~eEL~yWgI~~-----~~le~CC~~ 135 (477)
T KOG3713|consen 105 HV-PADVCPLSFEEELDYWGIDE-----AHLESCCWM 135 (477)
T ss_pred cc-ccccchHHHHHHHHHhCCCh-----hhhhHHhHH
Confidence 97 6777664433 36777776 455665543
No 35
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=38.38 E-value=1.2e+02 Score=30.32 Aligned_cols=94 Identities=18% Similarity=0.145 Sum_probs=65.8
Q ss_pred eeEEEEEcCEEEEeccceeccCC-hHHHHhhCCCC----CCCcceEEecCCCCCHHHHHHHHHHhhCCceeecCCchhhH
Q 007644 28 SDLVIQVNNIRYLLHKFPLLPKC-GLLQRLCSDPE----DSDSVTIELHDIPGGEDAFELCAKFCYGITINLSAHNFVPA 102 (595)
Q Consensus 28 ~DVtl~V~g~~F~lHK~vLas~S-~YFr~Lf~~~~----e~~~~~I~L~d~pGGa~afelll~FcYg~~i~It~~NV~~L 102 (595)
.=|-+.|||..|.--|.-|.--+ .++.+++.... +.+..---|-|=. |.-|.-++.|.--|++-+++---..+
T Consensus 21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRD--P~~FgpvLNylRhgklvl~~l~eeGv 98 (210)
T KOG2715|consen 21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRD--PFYFGPVLNYLRHGKLVLNKLSEEGV 98 (210)
T ss_pred EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccC--cchHHHHHHHHhcchhhhhhhhhhcc
Confidence 34567899999999999999888 56666665432 2222222332333 58999999999999999988555668
Q ss_pred HHhhcccCcccccccchHHHHHHHHhH
Q 007644 103 FCAAKFLRMAESVEKGNFILKLESFFH 129 (595)
Q Consensus 103 lcAA~~LqM~e~~~~gNL~~~ce~FL~ 129 (595)
+.-|+|...+. |++...+-+.
T Consensus 99 L~EAefyn~~~------li~likd~i~ 119 (210)
T KOG2715|consen 99 LEEAEFYNDPS------LIQLIKDRIQ 119 (210)
T ss_pred chhhhccCChH------HHHHHHHHHH
Confidence 88899988884 5554444443
No 36
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=31.58 E-value=33 Score=28.13 Aligned_cols=19 Identities=21% Similarity=0.494 Sum_probs=16.6
Q ss_pred hhhHHHHHHHhhCCCCCHH
Q 007644 427 DLYKFINIYLKEHPELSKT 445 (595)
Q Consensus 427 gLYRAIDiYLKaHp~Lse~ 445 (595)
.||.|+.-||+.||+-...
T Consensus 9 ~L~~~m~~fie~hP~WDQ~ 27 (57)
T PF10929_consen 9 DLHQAMKDFIETHPNWDQY 27 (57)
T ss_pred HHHHHHHHHHHcCCCchHH
Confidence 5999999999999997653
No 37
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=31.31 E-value=1.4e+02 Score=33.86 Aligned_cols=96 Identities=18% Similarity=0.265 Sum_probs=61.4
Q ss_pred cHHHHHHHHHHHHhhhhccC---CCCCCC-CCCch-----------hhhHHHHHHHHHHHHHhhhhhCCC----------
Q 007644 349 DIDLVMTVLESYLVLWRRQS---PGTTPA-ESNNQ-----------FLMSSIRKVAKIIDSYLQVVARDI---------- 403 (595)
Q Consensus 349 DVd~V~Ril~~Fl~~~~~~~---~~~~~~-~~~~~-----------~~~~~l~kVakLvD~YLaEIA~D~---------- 403 (595)
|.=.+.+.+++|+.++..+. +|..|- .++.. +...-..+|.+.+-.+|.+++.+|
T Consensus 294 ~FWim~~aLk~Fv~~e~~g~lPL~GtlPDM~ssTe~YI~Lq~iY~eKA~~D~~~v~~~v~~vlk~lgr~~~sIs~~~ik~ 373 (523)
T KOG2016|consen 294 DFWIMAAALKEFVLKEEGGFLPLRGTLPDMTSSTEHYIRLQKIYHEKAEADALEVERRVQEVLKSLGRSPDSISDDVIKL 373 (523)
T ss_pred HHHHHHHHHHHHHcccCCCccCCCCCCCccccCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCccccCHHHHHH
Confidence 33356788999998643211 122331 11100 112456689999999999999984
Q ss_pred ------CCChhHHHHHHHhcCcccc-----cccch---------hhHHHHHHHhhCCCCCH
Q 007644 404 ------NMPVMKLVSLAETLPAIAR-----GKHDD---------LYKFINIYLKEHPELSK 444 (595)
Q Consensus 404 ------nL~~sKF~~LAealPd~AR-----~~hDg---------LYRAIDiYLKaHp~Lse 444 (595)
+|++-.|..|+|-.-++.+ .+.|. +|||+|-||+.|-....
T Consensus 374 fCkna~~lkv~r~~~~~eey~~s~~~~~~~~~~e~~~~~~~~~~~lRavdrfl~~~gk~pG 434 (523)
T KOG2016|consen 374 FCKNAAKLKVCRGRTLAEEYEKSITELIKYSSNENYSNEIGFYLLLRAVDRFLKEKGKYPG 434 (523)
T ss_pred HHhhhhcceeeecchhhhhhcccchhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCCC
Confidence 4666667778876665544 33344 79999999999876654
No 38
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=26.71 E-value=31 Score=35.14 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=27.6
Q ss_pred HHHhcC--cccccccchhhHHHHHHHhhCCCCCHHHHh
Q 007644 413 LAETLP--AIARGKHDDLYKFINIYLKEHPELSKTERK 448 (595)
Q Consensus 413 LAealP--d~AR~~hDgLYRAIDiYLKaHp~Lse~Er~ 448 (595)
+.+-+| +..+..-+|=|+||.-|||.||+==|.++.
T Consensus 182 ~v~dlp~~~~p~~~g~gP~~AVe~ylr~~p~~yEiD~~ 219 (237)
T COG3510 182 NVNDLPGPVLPWRFGGGPYEAVEAYLREFPQDYEIDTS 219 (237)
T ss_pred cccCCCCcccchhcCCChHHHHHHHHHhCCcccccchh
Confidence 445666 556667899999999999999976555554
No 39
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=23.35 E-value=51 Score=28.60 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=14.1
Q ss_pred chhhHHHHHHHhhCCC
Q 007644 426 DDLYKFINIYLKEHPE 441 (595)
Q Consensus 426 DgLYRAIDiYLKaHp~ 441 (595)
=.||-||+-||..|..
T Consensus 31 PQLYnAI~k~L~RHkF 46 (82)
T PF11123_consen 31 PQLYNAIGKLLDRHKF 46 (82)
T ss_pred hHHHHHHHHHHHHccc
Confidence 3699999999999975
No 40
>PHA00617 ribbon-helix-helix domain containing protein
Probab=22.74 E-value=1.3e+02 Score=26.34 Aligned_cols=37 Identities=22% Similarity=0.094 Sum_probs=32.6
Q ss_pred ccCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 007644 206 SELDIELFRCIVTAVRSTYMLPPQLIGEALHVYACRW 242 (595)
Q Consensus 206 ~~L~~d~f~rvI~am~s~g~~~ee~V~~aL~~Ya~rw 242 (595)
..||.++.+++-.-.+..|.-+.+.|-+|+..|+..|
T Consensus 44 VrLp~eL~erLD~LA~~~GrsRSelIreAI~~YLee~ 80 (80)
T PHA00617 44 FKLPPELNAKLEQVAIKMKKSKSEIIREALEKYLEEV 80 (80)
T ss_pred EECCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhC
Confidence 4699999999988888888778889999999999877
Done!