BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007645
(595 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
Length = 211
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 258 LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 301
LPFP SFD+V L F L+E R+LRPGG LV+
Sbjct: 89 LPFPGESFDVVLLFTTL-EFVEDVERVLLEARRVLRPGGALVVG 131
>pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
pdb|2AVN|B Chain B, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
Length = 260
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 9/117 (7%)
Query: 189 KLKQYIPITGGTLRTALDMGCGVASFGGS------MLSENILTLSFAPRDSHKAQIQFAL 242
K K Y + G L L C V GG L E + D K ++ A
Sbjct: 36 KWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLV--DPSKEXLEVAR 93
Query: 243 ERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLV 299
E+G+ V LPFP+ +F+ V ++ + E+ R+L P G L+
Sbjct: 94 EKGVKNVVEA-KAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLI 149
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 205 LDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQ----FALERGIPAFVAMLGT-RRLP 259
LD+G G G + L+ + D+ K ++ FA E+G+ GT LP
Sbjct: 26 LDIGAGA---GHTALAFSPYVQECIGVDATKEXVEVASSFAQEKGVENVRFQQGTAESLP 82
Query: 260 FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVI 300
FP SFDI+ C F+ + EV R+L+ G ++
Sbjct: 83 FPDDSFDIITCRYAAHHFSDVRKA-VREVARVLKQDGRFLL 122
>pdb|2LD4|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
Anamorsin
Length = 176
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 264 SFDIVHCSRCLIP--FTAYNATYLIEVDRLLRPGGYLVISGP 303
SFDI+ L+P T ++A L E+ R+LRPGG L + P
Sbjct: 63 SFDIILSG--LVPGSTTLHSAEILAEIARILRPGGCLFLKEP 102
>pdb|2YUI|A Chain A, Solution Structure Of The N-Terminal Domain In Human
Cytokine-Induced Apoptosis Inhibitor Anamorsin
Length = 182
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 264 SFDIVHCSRCLIP--FTAYNATYLIEVDRLLRPGGYLVISGP 303
SFDI+ L+P T ++A L E+ R+LRPGG L + P
Sbjct: 66 SFDIILSG--LVPGSTTLHSAEILAEIARILRPGGCLFLKEP 105
>pdb|3E1T|A Chain A, Structure And Action Of The Myxobacterial Chondrochloren
Halogenase Cndh, A New Variant Of Fad-Dependent
Halogenases
Length = 512
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 31/69 (44%)
Query: 246 IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPV 305
+ +FVAM G R L +F L+P T + ++ + ++ G+ + G
Sbjct: 22 LASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTF 81
Query: 306 QWPKQDKEW 314
+W K+ + W
Sbjct: 82 RWGKEPEPW 90
>pdb|1FJ2|A Chain A, Crystal Structure Of The Human Acyl Protein Thioesterase 1
At 1.5 A Resolution
pdb|1FJ2|B Chain B, Crystal Structure Of The Human Acyl Protein Thioesterase 1
At 1.5 A Resolution
Length = 232
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 469 VVPARKSSTLSVIYDRGLIGVYHDWCEPFS 498
+VPA + +T +VI+ GL H W E F+
Sbjct: 15 IVPAARKATAAVIFLHGLGDTGHGWAEAFA 44
>pdb|3HCA|A Chain A, Crystal Structure Of E185q Hpnmt In Complex With
Octopamine And Adohcy
pdb|3HCA|B Chain B, Crystal Structure Of E185q Hpnmt In Complex With
Octopamine And Adohcy
Length = 289
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 259 PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302
P PA + C + + P A L + LLRPGG+L++ G
Sbjct: 172 PLPADALVSAFCLQAVSPDLASFQRALDHITTLLRPGGHLLLIG 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,904,571
Number of Sequences: 62578
Number of extensions: 824221
Number of successful extensions: 1709
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1706
Number of HSP's gapped (non-prelim): 9
length of query: 595
length of database: 14,973,337
effective HSP length: 104
effective length of query: 491
effective length of database: 8,465,225
effective search space: 4156425475
effective search space used: 4156425475
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)