Query 007645
Match_columns 595
No_of_seqs 570 out of 2831
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 13:25:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007645.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007645hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 8E-159 2E-163 1266.7 32.7 495 88-588 1-506 (506)
2 PF03141 Methyltransf_29: Puta 100.0 7.6E-38 1.7E-42 336.0 8.4 197 371-590 33-262 (506)
3 PLN02336 phosphoethanolamine N 99.8 1.4E-17 3.1E-22 184.0 17.0 318 188-549 27-369 (475)
4 COG2226 UbiE Methylase involve 99.7 1.6E-16 3.4E-21 160.2 12.8 115 185-303 38-157 (238)
5 PF08241 Methyltransf_11: Meth 99.6 8.2E-16 1.8E-20 130.5 9.5 93 205-300 1-95 (95)
6 PF01209 Ubie_methyltran: ubiE 99.6 9.4E-16 2E-20 154.9 11.4 112 188-302 37-153 (233)
7 PLN02233 ubiquinone biosynthes 99.6 1.3E-14 2.8E-19 148.8 17.1 110 191-303 66-183 (261)
8 COG4106 Tam Trans-aconitate me 99.6 3.7E-15 8E-20 145.7 11.2 213 188-436 20-233 (257)
9 PTZ00098 phosphoethanolamine N 99.5 9E-14 2E-18 142.8 15.6 122 178-303 32-157 (263)
10 PLN02244 tocopherol O-methyltr 99.5 1.2E-13 2.6E-18 147.0 17.0 117 184-303 99-224 (340)
11 PLN02396 hexaprenyldihydroxybe 99.5 1E-13 2.2E-18 146.3 15.6 129 201-333 132-289 (322)
12 PRK10258 biotin biosynthesis p 99.5 9.6E-14 2.1E-18 140.9 13.9 111 187-303 31-141 (251)
13 COG2227 UbiG 2-polyprenyl-3-me 99.5 1.5E-14 3.3E-19 144.3 6.7 102 202-307 61-166 (243)
14 PF13489 Methyltransf_23: Meth 99.5 1.4E-13 3.1E-18 128.4 12.5 121 201-330 23-160 (161)
15 PRK11036 putative S-adenosyl-L 99.5 1.8E-13 3.9E-18 139.6 12.6 99 201-303 45-150 (255)
16 PRK14103 trans-aconitate 2-met 99.5 1.7E-13 3.6E-18 139.7 11.7 110 187-303 18-127 (255)
17 TIGR02752 MenG_heptapren 2-hep 99.5 1.2E-12 2.6E-17 130.9 16.8 116 185-303 32-152 (231)
18 PRK01683 trans-aconitate 2-met 99.5 5.6E-13 1.2E-17 135.7 14.5 134 187-328 20-153 (258)
19 PLN02490 MPBQ/MSBQ methyltrans 99.5 2.1E-12 4.5E-17 137.1 18.2 136 201-338 114-261 (340)
20 PLN02336 phosphoethanolamine N 99.4 1.8E-12 3.9E-17 143.5 17.5 111 188-303 256-370 (475)
21 PRK05785 hypothetical protein; 99.4 8E-13 1.7E-17 132.9 12.8 90 201-296 52-141 (226)
22 PRK11207 tellurite resistance 99.4 2.4E-12 5.3E-17 126.6 15.5 143 191-341 23-178 (197)
23 TIGR00477 tehB tellurite resis 99.4 3.6E-12 7.7E-17 125.2 15.4 146 190-343 22-179 (195)
24 PRK08317 hypothetical protein; 99.4 2.7E-12 5.8E-17 127.3 14.3 117 184-303 5-125 (241)
25 PRK15068 tRNA mo(5)U34 methylt 99.4 5E-12 1.1E-16 133.7 16.4 138 188-331 112-272 (322)
26 KOG1540 Ubiquinone biosynthesi 99.4 2.3E-12 5E-17 129.1 12.7 102 200-302 100-214 (296)
27 PF12847 Methyltransf_18: Meth 99.4 3.3E-12 7.2E-17 112.7 10.7 99 202-302 3-111 (112)
28 PRK11088 rrmA 23S rRNA methylt 99.4 3.3E-12 7.1E-17 131.7 12.1 112 183-305 71-184 (272)
29 TIGR00452 methyltransferase, p 99.4 1.5E-11 3.3E-16 129.4 16.8 139 188-332 111-272 (314)
30 PF13847 Methyltransf_31: Meth 99.4 3.2E-12 7E-17 120.0 10.4 101 201-303 4-111 (152)
31 TIGR02072 BioC biotin biosynth 99.3 7.1E-12 1.5E-16 124.5 12.8 101 201-303 35-136 (240)
32 PF13649 Methyltransf_25: Meth 99.3 1.4E-12 3E-17 114.1 6.2 93 204-296 1-101 (101)
33 PRK11873 arsM arsenite S-adeno 99.3 2.8E-11 6.1E-16 124.4 15.8 102 201-303 78-184 (272)
34 KOG4300 Predicted methyltransf 99.3 6.9E-12 1.5E-16 122.1 10.4 111 203-319 79-196 (252)
35 TIGR00740 methyltransferase, p 99.3 1.3E-11 2.8E-16 124.6 12.6 101 201-303 54-162 (239)
36 PRK15451 tRNA cmo(5)U34 methyl 99.3 1.4E-11 3E-16 125.4 12.7 101 201-303 57-165 (247)
37 PF02353 CMAS: Mycolic acid cy 99.3 1.1E-11 2.4E-16 128.2 12.0 121 175-302 39-166 (273)
38 PRK12335 tellurite resistance 99.3 2.9E-11 6.3E-16 125.7 14.8 127 203-335 123-261 (287)
39 TIGR03587 Pse_Me-ase pseudamin 99.3 1.6E-11 3.4E-16 121.7 11.3 99 201-303 44-143 (204)
40 smart00828 PKS_MT Methyltransf 99.3 3.3E-11 7E-16 120.0 13.5 126 203-331 2-142 (224)
41 PF08242 Methyltransf_12: Meth 99.3 1.3E-12 2.7E-17 113.6 2.5 92 205-298 1-99 (99)
42 PRK00107 gidB 16S rRNA methylt 99.3 7.3E-11 1.6E-15 115.6 14.8 117 201-331 46-167 (187)
43 smart00138 MeTrc Methyltransfe 99.3 1.5E-11 3.3E-16 126.5 10.4 103 201-303 100-243 (264)
44 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 1.4E-10 3.1E-15 114.3 16.4 115 186-303 27-144 (223)
45 PRK00216 ubiE ubiquinone/menaq 99.3 1.7E-10 3.7E-15 114.9 16.7 115 186-303 39-159 (239)
46 COG2230 Cfa Cyclopropane fatty 99.3 4.1E-11 8.8E-16 123.4 12.1 119 178-303 52-177 (283)
47 PRK06922 hypothetical protein; 99.2 3.1E-11 6.6E-16 136.0 10.9 101 202-303 420-538 (677)
48 PRK11705 cyclopropane fatty ac 99.2 7.9E-11 1.7E-15 127.4 12.6 112 185-303 154-268 (383)
49 PRK00121 trmB tRNA (guanine-N( 99.2 1.1E-10 2.4E-15 115.3 11.8 121 201-329 41-177 (202)
50 PF07021 MetW: Methionine bios 99.2 1.9E-10 4.1E-15 112.0 12.3 105 189-304 6-111 (193)
51 KOG1270 Methyltransferases [Co 99.2 5.1E-11 1.1E-15 120.1 8.5 98 201-305 90-198 (282)
52 PRK05134 bifunctional 3-demeth 99.2 2.4E-10 5.1E-15 114.6 13.2 140 187-332 37-204 (233)
53 TIGR02021 BchM-ChlM magnesium 99.2 3E-10 6.4E-15 113.1 13.8 144 183-332 38-205 (219)
54 TIGR03840 TMPT_Se_Te thiopurin 99.2 2.8E-10 6E-15 113.7 13.3 98 202-302 36-152 (213)
55 PF03848 TehB: Tellurite resis 99.2 3.3E-10 7.2E-15 111.1 12.9 139 190-336 22-172 (192)
56 TIGR00537 hemK_rel_arch HemK-r 99.2 7.7E-10 1.7E-14 106.8 15.3 119 202-331 21-163 (179)
57 PRK06202 hypothetical protein; 99.1 3.8E-10 8.3E-15 113.4 13.1 100 201-302 61-166 (232)
58 PRK01544 bifunctional N5-gluta 99.1 4.2E-09 9E-14 117.9 22.4 294 202-561 140-475 (506)
59 TIGR02469 CbiT precorrin-6Y C5 99.1 1E-09 2.2E-14 98.0 14.0 109 187-302 8-122 (124)
60 PF05401 NodS: Nodulation prot 99.1 4.4E-10 9.5E-15 109.8 12.0 100 199-302 42-146 (201)
61 TIGR00406 prmA ribosomal prote 99.1 1.1E-09 2.3E-14 114.2 15.4 114 202-330 161-280 (288)
62 PRK11188 rrmJ 23S rRNA methylt 99.1 5.4E-10 1.2E-14 111.2 12.4 94 202-302 53-165 (209)
63 PLN02585 magnesium protoporphy 99.1 1E-09 2.3E-14 115.6 14.9 110 185-301 128-249 (315)
64 TIGR00138 gidB 16S rRNA methyl 99.1 1.7E-09 3.7E-14 105.4 14.9 94 202-302 44-142 (181)
65 KOG3010 Methyltransferase [Gen 99.1 2.4E-10 5.2E-15 114.0 8.9 129 201-344 34-169 (261)
66 KOG1541 Predicted protein carb 99.1 6.1E-10 1.3E-14 109.6 11.3 133 186-326 36-180 (270)
67 PF05175 MTS: Methyltransferas 99.1 3.4E-09 7.3E-14 101.9 15.8 112 188-303 21-141 (170)
68 PRK13944 protein-L-isoaspartat 99.1 1.1E-09 2.4E-14 108.5 12.8 109 185-302 59-173 (205)
69 PRK09489 rsmC 16S ribosomal RN 99.1 2.8E-09 6E-14 113.7 16.1 141 187-339 185-333 (342)
70 TIGR02081 metW methionine bios 99.1 3.2E-09 7E-14 103.9 15.3 88 202-294 15-104 (194)
71 TIGR00091 tRNA (guanine-N(7)-) 99.1 1E-09 2.2E-14 107.7 11.6 100 202-303 18-133 (194)
72 TIGR01983 UbiG ubiquinone bios 99.1 3.3E-09 7.2E-14 105.4 15.2 129 201-333 46-203 (224)
73 PRK13255 thiopurine S-methyltr 99.0 2.1E-09 4.5E-14 107.8 13.3 96 202-300 39-153 (218)
74 PRK00517 prmA ribosomal protei 99.0 4.1E-09 8.8E-14 107.6 15.6 113 201-331 120-236 (250)
75 PRK04266 fibrillarin; Provisio 99.0 5.9E-09 1.3E-13 105.1 16.3 134 192-332 66-209 (226)
76 PRK08287 cobalt-precorrin-6Y C 99.0 8.1E-09 1.8E-13 100.4 16.4 127 189-330 22-153 (187)
77 PF08003 Methyltransf_9: Prote 99.0 1.8E-09 3.8E-14 111.8 12.3 137 189-331 106-265 (315)
78 COG4976 Predicted methyltransf 99.0 2.1E-10 4.6E-15 113.4 5.1 132 199-334 124-266 (287)
79 PRK07580 Mg-protoporphyrin IX 99.0 7.1E-09 1.5E-13 103.3 15.2 93 201-299 64-163 (230)
80 PRK14967 putative methyltransf 99.0 1.2E-08 2.7E-13 102.1 16.6 119 202-329 38-180 (223)
81 PRK13942 protein-L-isoaspartat 99.0 3.6E-09 7.7E-14 105.5 12.6 110 184-302 62-176 (212)
82 COG2813 RsmC 16S RNA G1207 met 99.0 9.3E-09 2E-13 106.5 15.8 158 169-339 128-296 (300)
83 PF13659 Methyltransf_26: Meth 99.0 1.2E-09 2.7E-14 97.1 7.9 100 202-303 2-116 (117)
84 PRK14121 tRNA (guanine-N(7)-)- 99.0 3.3E-09 7.2E-14 114.1 12.3 99 202-302 124-235 (390)
85 PRK15001 SAM-dependent 23S rib 99.0 5.6E-09 1.2E-13 112.6 13.8 131 168-302 197-340 (378)
86 TIGR03534 RF_mod_PrmC protein- 99.0 2.1E-08 4.6E-13 101.1 17.2 137 183-331 73-239 (251)
87 TIGR00080 pimt protein-L-isoas 99.0 6.3E-09 1.4E-13 103.6 13.1 109 185-302 64-177 (215)
88 PF06325 PrmA: Ribosomal prote 99.0 3.5E-09 7.5E-14 110.6 11.4 145 173-332 134-282 (295)
89 COG2264 PrmA Ribosomal protein 99.0 6E-09 1.3E-13 108.3 12.8 120 200-331 162-286 (300)
90 PRK14968 putative methyltransf 99.0 2E-08 4.4E-13 96.5 15.7 119 202-330 25-170 (188)
91 TIGR02716 C20_methyl_CrtF C-20 99.0 5.3E-09 1.1E-13 109.6 12.6 110 188-303 139-255 (306)
92 PRK00377 cbiT cobalt-precorrin 99.0 1.9E-08 4.2E-13 98.9 15.7 125 192-328 34-165 (198)
93 PLN03075 nicotianamine synthas 98.9 6.2E-09 1.4E-13 108.4 12.2 101 201-302 124-233 (296)
94 TIGR01177 conserved hypothetic 98.9 1E-08 2.2E-13 108.8 13.6 131 186-331 170-313 (329)
95 TIGR03438 probable methyltrans 98.9 7.9E-09 1.7E-13 108.3 11.3 102 201-302 64-177 (301)
96 cd02440 AdoMet_MTases S-adenos 98.9 1.3E-08 2.8E-13 85.5 10.3 97 203-301 1-103 (107)
97 PLN02232 ubiquinone biosynthes 98.8 7.4E-09 1.6E-13 98.7 8.2 73 230-303 2-82 (160)
98 KOG1271 Methyltransferases [Ge 98.8 4E-08 8.8E-13 94.4 12.6 121 203-331 70-203 (227)
99 PF05148 Methyltransf_8: Hypot 98.8 1.7E-08 3.7E-13 99.5 10.4 112 202-333 74-185 (219)
100 PRK09328 N5-glutamine S-adenos 98.8 8.1E-08 1.8E-12 98.5 15.5 136 184-330 94-259 (275)
101 PTZ00146 fibrillarin; Provisio 98.8 7.4E-08 1.6E-12 100.1 14.1 130 196-331 130-269 (293)
102 PF03291 Pox_MCEL: mRNA cappin 98.8 2.9E-08 6.4E-13 105.4 11.2 102 200-303 62-187 (331)
103 PRK14966 unknown domain/N5-glu 98.8 1.9E-07 4.2E-12 101.4 17.3 138 184-333 239-405 (423)
104 PHA03411 putative methyltransf 98.8 1.3E-07 2.8E-12 97.5 15.2 126 202-331 66-212 (279)
105 COG4123 Predicted O-methyltran 98.8 9.8E-08 2.1E-12 97.0 14.1 141 190-343 36-201 (248)
106 TIGR03533 L3_gln_methyl protei 98.8 1.8E-07 3.9E-12 97.4 16.3 119 202-330 123-271 (284)
107 PRK13256 thiopurine S-methyltr 98.8 7E-08 1.5E-12 97.2 12.7 99 202-303 45-164 (226)
108 PF05891 Methyltransf_PK: AdoM 98.8 2.5E-08 5.4E-13 99.0 9.3 133 200-334 55-202 (218)
109 TIGR00536 hemK_fam HemK family 98.8 1.5E-07 3.3E-12 97.8 15.3 138 184-331 99-267 (284)
110 PRK00312 pcm protein-L-isoaspa 98.7 1.2E-07 2.6E-12 94.1 13.4 106 186-303 66-176 (212)
111 KOG3045 Predicted RNA methylas 98.7 4.3E-08 9.2E-13 98.8 10.1 124 188-334 169-292 (325)
112 TIGR00438 rrmJ cell division p 98.7 6.5E-08 1.4E-12 94.2 11.2 95 202-302 34-146 (188)
113 KOG2940 Predicted methyltransf 98.7 1.2E-08 2.5E-13 101.2 5.6 99 201-302 73-174 (325)
114 PRK07402 precorrin-6B methylas 98.7 1.8E-07 4E-12 91.7 13.4 107 189-303 31-143 (196)
115 KOG2361 Predicted methyltransf 98.7 6.3E-08 1.4E-12 96.9 9.9 120 184-303 55-184 (264)
116 PRK10901 16S rRNA methyltransf 98.7 2.5E-07 5.4E-12 101.7 14.9 126 192-323 238-390 (427)
117 KOG1975 mRNA cap methyltransfe 98.7 3.7E-08 7.9E-13 102.0 7.2 101 201-303 118-238 (389)
118 PF05219 DREV: DREV methyltran 98.7 1.9E-07 4.2E-12 94.9 11.9 122 173-302 65-188 (265)
119 PF01135 PCMT: Protein-L-isoas 98.6 1.3E-07 2.9E-12 94.2 10.1 112 183-303 57-173 (209)
120 PRK11805 N5-glutamine S-adenos 98.6 7E-07 1.5E-11 94.1 16.1 116 202-327 135-280 (307)
121 TIGR03704 PrmC_rel_meth putati 98.6 1.2E-06 2.6E-11 89.7 16.9 138 183-329 70-236 (251)
122 PRK14901 16S rRNA methyltransf 98.6 4.8E-07 1E-11 99.6 15.0 128 192-324 246-403 (434)
123 PRK13943 protein-L-isoaspartat 98.6 3.2E-07 7E-12 97.1 12.9 109 185-302 67-180 (322)
124 TIGR00563 rsmB ribosomal RNA s 98.6 4.3E-07 9.2E-12 99.8 14.0 128 190-323 230-386 (426)
125 smart00650 rADc Ribosomal RNA 98.6 2E-07 4.3E-12 89.3 10.0 106 188-302 3-113 (169)
126 PF06080 DUF938: Protein of un 98.6 3.1E-07 6.8E-12 90.7 11.5 143 184-331 12-190 (204)
127 PRK00811 spermidine synthase; 98.6 5.2E-07 1.1E-11 94.0 13.4 102 200-303 76-192 (283)
128 PRK14904 16S rRNA methyltransf 98.6 2.3E-07 5E-12 102.5 10.5 118 202-323 252-395 (445)
129 PRK01581 speE spermidine synth 98.6 7.6E-07 1.7E-11 95.1 13.4 155 171-329 120-293 (374)
130 PF00891 Methyltransf_2: O-met 98.6 4.1E-07 8.8E-12 91.9 10.9 97 201-303 101-200 (241)
131 PRK14903 16S rRNA methyltransf 98.5 7.3E-07 1.6E-11 98.1 12.7 125 193-322 232-383 (431)
132 TIGR00446 nop2p NOL1/NOP2/sun 98.5 3.7E-07 8E-12 94.0 9.6 104 202-305 73-202 (264)
133 PRK14902 16S rRNA methyltransf 98.5 9.3E-07 2E-11 97.6 12.5 112 191-305 243-382 (444)
134 PHA03412 putative methyltransf 98.5 9.2E-07 2E-11 89.4 11.0 95 202-297 51-158 (241)
135 PF01739 CheR: CheR methyltran 98.5 7.5E-07 1.6E-11 88.0 9.9 104 200-303 31-176 (196)
136 COG2518 Pcm Protein-L-isoaspar 98.5 1.7E-06 3.7E-11 85.7 12.2 105 185-302 59-169 (209)
137 PRK04457 spermidine synthase; 98.4 1.2E-06 2.6E-11 90.3 11.2 115 185-302 52-177 (262)
138 PF05724 TPMT: Thiopurine S-me 98.4 1.9E-06 4.2E-11 86.5 12.4 127 202-332 39-189 (218)
139 PRK03612 spermidine synthase; 98.4 3.5E-06 7.6E-11 94.9 15.2 124 200-327 297-438 (521)
140 COG2242 CobL Precorrin-6B meth 98.4 5.2E-06 1.1E-10 80.8 13.8 123 190-327 26-154 (187)
141 PLN02366 spermidine synthase 98.4 3.8E-06 8.2E-11 88.6 13.8 101 200-302 91-206 (308)
142 PF08241 Methyltransf_11: Meth 98.4 8.7E-08 1.9E-12 80.9 1.1 91 446-547 1-95 (95)
143 PF02390 Methyltransf_4: Putat 98.4 2.3E-06 5.1E-11 84.4 11.2 120 203-330 20-157 (195)
144 TIGR00417 speE spermidine synt 98.4 2E-06 4.4E-11 88.8 11.1 102 200-303 72-187 (270)
145 COG2890 HemK Methylase of poly 98.4 1E-05 2.3E-10 84.2 15.9 119 203-331 113-261 (280)
146 COG2519 GCD14 tRNA(1-methylade 98.3 7.1E-06 1.5E-10 83.2 13.5 106 189-303 85-196 (256)
147 COG0220 Predicted S-adenosylme 98.3 3.3E-06 7.1E-11 85.3 10.2 98 203-302 51-164 (227)
148 PLN02781 Probable caffeoyl-CoA 98.3 5.2E-06 1.1E-10 84.2 11.7 111 183-302 56-178 (234)
149 PRK10611 chemotaxis methyltran 98.3 4.1E-06 8.9E-11 87.4 11.0 101 202-302 117-262 (287)
150 PRK13168 rumA 23S rRNA m(5)U19 98.3 6.1E-06 1.3E-10 91.2 12.8 131 184-331 283-422 (443)
151 PRK11783 rlmL 23S rRNA m(2)G24 98.2 8.8E-06 1.9E-10 94.8 12.5 121 202-331 540-678 (702)
152 PRK10909 rsmD 16S rRNA m(2)G96 98.2 2.3E-05 5E-10 77.6 13.6 117 181-303 35-160 (199)
153 TIGR00478 tly hemolysin TlyA f 98.2 1.9E-05 4.1E-10 79.8 12.8 103 187-302 63-171 (228)
154 PRK03522 rumB 23S rRNA methylu 98.2 1.4E-05 3.1E-10 84.4 12.3 113 185-306 160-278 (315)
155 PF07942 N2227: N2227-like pro 98.2 3.3E-05 7.1E-10 79.8 14.2 146 186-335 40-244 (270)
156 COG0500 SmtA SAM-dependent met 98.1 2.6E-05 5.6E-10 67.7 10.8 97 204-303 52-156 (257)
157 COG1352 CheR Methylase of chem 98.1 1.7E-05 3.6E-10 82.0 10.5 103 200-302 96-241 (268)
158 PF08704 GCD14: tRNA methyltra 98.1 3E-05 6.5E-10 79.3 12.0 130 187-330 29-168 (247)
159 PRK15128 23S rRNA m(5)C1962 me 98.1 5.1E-05 1.1E-09 82.8 14.0 100 202-303 222-340 (396)
160 COG3963 Phospholipid N-methylt 98.1 3.8E-05 8.2E-10 73.4 11.2 118 183-302 33-156 (194)
161 PRK00274 ksgA 16S ribosomal RN 98.0 1.5E-05 3.3E-10 82.5 9.0 83 185-272 29-113 (272)
162 PLN02672 methionine S-methyltr 98.0 6.2E-05 1.3E-09 90.5 14.8 120 202-330 120-300 (1082)
163 KOG2899 Predicted methyltransf 98.0 4.4E-05 9.5E-10 76.9 11.1 107 194-301 52-208 (288)
164 TIGR00479 rumA 23S rRNA (uraci 98.0 4.4E-05 9.6E-10 84.0 12.1 108 186-302 280-396 (431)
165 COG1041 Predicted DNA modifica 98.0 4.2E-05 9.1E-10 81.1 11.2 132 184-331 183-328 (347)
166 PRK14896 ksgA 16S ribosomal RN 98.0 4E-05 8.6E-10 78.7 10.3 84 184-274 15-101 (258)
167 PF13489 Methyltransf_23: Meth 98.0 2E-06 4.3E-11 80.1 0.5 95 440-551 21-117 (161)
168 COG2521 Predicted archaeal met 98.0 3.6E-05 7.9E-10 77.1 9.3 145 184-331 118-275 (287)
169 PRK11727 23S rRNA mA1618 methy 97.9 0.00017 3.8E-09 76.4 14.9 107 169-276 76-201 (321)
170 PF01170 UPF0020: Putative RNA 97.9 4.7E-05 1E-09 74.1 9.8 133 185-330 15-168 (179)
171 TIGR02085 meth_trns_rumB 23S r 97.9 8.3E-05 1.8E-09 80.6 11.8 95 202-303 235-335 (374)
172 PLN02823 spermine synthase 97.9 0.00017 3.6E-09 77.1 13.9 116 186-303 89-221 (336)
173 PLN02476 O-methyltransferase 97.9 8.8E-05 1.9E-09 77.1 11.5 111 183-302 106-228 (278)
174 TIGR00755 ksgA dimethyladenosi 97.9 0.00012 2.7E-09 74.8 12.5 83 185-274 16-104 (253)
175 PF01596 Methyltransf_3: O-met 97.9 7.5E-05 1.6E-09 74.4 9.9 110 184-302 34-155 (205)
176 PRK00107 gidB 16S rRNA methylt 97.9 7.8E-05 1.7E-09 73.2 9.9 151 420-589 27-187 (187)
177 COG4122 Predicted O-methyltran 97.9 9.6E-05 2.1E-09 74.2 10.6 112 181-301 45-165 (219)
178 PF10294 Methyltransf_16: Puta 97.8 0.00011 2.4E-09 71.0 10.5 101 200-303 45-157 (173)
179 PRK04148 hypothetical protein; 97.8 0.00012 2.7E-09 68.0 10.1 100 189-301 7-108 (134)
180 KOG1331 Predicted methyltransf 97.8 1.2E-05 2.6E-10 82.7 3.6 95 202-302 47-143 (293)
181 KOG1661 Protein-L-isoaspartate 97.8 0.00011 2.3E-09 72.7 9.4 93 203-302 85-193 (237)
182 PRK10258 biotin biosynthesis p 97.8 4.2E-05 9.2E-10 77.7 6.4 100 436-548 37-139 (251)
183 PF11968 DUF3321: Putative met 97.8 0.00025 5.5E-09 70.6 11.6 136 184-333 33-181 (219)
184 KOG1499 Protein arginine N-met 97.8 8.8E-05 1.9E-09 78.4 8.8 96 202-299 62-164 (346)
185 PF12147 Methyltransf_20: Puta 97.7 0.00028 6E-09 73.1 12.0 167 129-303 70-250 (311)
186 PRK01544 bifunctional N5-gluta 97.7 8.8E-05 1.9E-09 83.4 9.0 100 201-302 348-462 (506)
187 KOG2904 Predicted methyltransf 97.7 0.00028 6.1E-09 72.3 11.5 120 183-303 130-286 (328)
188 COG2263 Predicted RNA methylas 97.7 0.00027 5.9E-09 69.0 10.7 116 201-331 46-166 (198)
189 PF05185 PRMT5: PRMT5 arginine 97.7 0.00013 2.7E-09 80.9 9.1 96 202-299 188-294 (448)
190 PTZ00338 dimethyladenosine tra 97.6 0.00022 4.8E-09 74.8 9.2 83 185-274 23-111 (294)
191 KOG3178 Hydroxyindole-O-methyl 97.6 0.00027 5.7E-09 74.9 9.4 97 201-303 178-276 (342)
192 PRK08317 hypothetical protein; 97.6 7.6E-05 1.6E-09 73.9 5.2 103 437-549 15-124 (241)
193 KOG3987 Uncharacterized conser 97.6 3.8E-05 8.3E-10 75.5 2.8 125 170-302 82-207 (288)
194 PLN02244 tocopherol O-methyltr 97.6 8.8E-05 1.9E-09 79.3 5.5 94 441-549 118-223 (340)
195 PF02353 CMAS: Mycolic acid cy 97.6 4.2E-05 9.2E-10 79.4 2.8 109 427-548 52-165 (273)
196 PLN02233 ubiquinone biosynthes 97.5 0.00013 2.9E-09 75.0 6.5 95 443-549 75-182 (261)
197 TIGR00477 tehB tellurite resis 97.5 0.00011 2.3E-09 72.4 5.4 93 443-547 32-131 (195)
198 smart00828 PKS_MT Methyltransf 97.5 4.8E-05 1E-09 75.7 2.9 95 443-549 1-104 (224)
199 PLN02589 caffeoyl-CoA O-methyl 97.5 0.00036 7.9E-09 71.5 9.4 110 183-301 67-189 (247)
200 KOG1269 SAM-dependent methyltr 97.5 0.00018 4E-09 77.4 7.0 97 203-302 113-215 (364)
201 PRK12335 tellurite resistance 97.5 0.00013 2.8E-09 76.1 5.5 114 444-571 123-257 (287)
202 PTZ00098 phosphoethanolamine N 97.5 7.9E-05 1.7E-09 76.8 3.4 98 442-550 53-157 (263)
203 PRK09489 rsmC 16S ribosomal RN 97.5 0.0031 6.8E-08 67.6 15.7 98 444-548 199-302 (342)
204 PF01728 FtsJ: FtsJ-like methy 97.4 0.00038 8.3E-09 67.2 7.8 109 187-302 9-139 (181)
205 PRK14103 trans-aconitate 2-met 97.4 0.00013 2.7E-09 74.6 4.6 99 437-548 25-125 (255)
206 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.4 0.00033 7.2E-09 72.0 7.6 144 187-332 43-238 (256)
207 TIGR00095 RNA methyltransferas 97.4 0.002 4.3E-08 63.3 12.8 114 184-303 34-160 (189)
208 PRK00536 speE spermidine synth 97.4 0.0013 2.7E-08 68.0 11.8 106 186-303 58-172 (262)
209 PF09243 Rsm22: Mitochondrial 97.4 0.0017 3.7E-08 67.5 12.5 110 187-303 22-140 (274)
210 PRK11088 rrmA 23S rRNA methylt 97.4 0.00029 6.2E-09 72.8 6.7 122 409-549 49-181 (272)
211 PRK11705 cyclopropane fatty ac 97.4 0.00017 3.7E-09 78.4 4.9 94 443-548 169-266 (383)
212 PRK04338 N(2),N(2)-dimethylgua 97.4 0.00053 1.1E-08 74.6 8.5 96 202-303 59-159 (382)
213 KOG3191 Predicted N6-DNA-methy 97.4 0.0022 4.8E-08 62.3 11.6 122 201-329 44-189 (209)
214 PRK11933 yebU rRNA (cytosine-C 97.4 0.0014 3.1E-08 73.0 12.0 121 201-324 114-261 (470)
215 PF01564 Spermine_synth: Sperm 97.4 0.0024 5.2E-08 65.4 12.7 139 184-326 60-213 (246)
216 PRK15068 tRNA mo(5)U34 methylt 97.4 0.00018 4E-09 76.3 4.7 95 443-548 124-225 (322)
217 TIGR00537 hemK_rel_arch HemK-r 97.3 0.00062 1.3E-08 65.7 7.7 123 443-571 21-163 (179)
218 PRK11207 tellurite resistance 97.3 0.00011 2.3E-09 72.5 2.3 93 443-547 32-132 (197)
219 COG0421 SpeE Spermidine syntha 97.3 0.0038 8.2E-08 65.2 13.8 105 197-303 73-191 (282)
220 KOG3201 Uncharacterized conser 97.3 0.0003 6.5E-09 67.0 4.8 134 202-341 31-175 (201)
221 TIGR02752 MenG_heptapren 2-hep 97.3 0.00034 7.4E-09 69.9 5.5 93 443-549 47-151 (231)
222 PF02384 N6_Mtase: N-6 DNA Met 97.3 0.00093 2E-08 70.1 9.0 119 184-304 32-185 (311)
223 TIGR00138 gidB 16S rRNA methyl 97.3 0.00021 4.6E-09 69.7 3.7 112 443-571 44-165 (181)
224 TIGR00406 prmA ribosomal prote 97.2 0.0005 1.1E-08 71.8 6.4 114 443-571 161-281 (288)
225 TIGR02072 BioC biotin biosynth 97.2 0.00041 9E-09 68.8 5.5 96 443-549 36-135 (240)
226 PLN02396 hexaprenyldihydroxybe 97.2 0.0005 1.1E-08 73.1 6.3 95 443-549 133-235 (322)
227 PRK00121 trmB tRNA (guanine-N( 97.2 0.00032 7E-09 69.4 4.4 127 442-571 41-179 (202)
228 PRK11036 putative S-adenosyl-L 97.2 0.00021 4.6E-09 73.0 3.0 93 443-548 46-148 (255)
229 PF12847 Methyltransf_18: Meth 97.2 0.00015 3.3E-09 63.6 1.6 98 443-549 3-111 (112)
230 PRK01683 trans-aconitate 2-met 97.2 0.00058 1.3E-08 69.6 6.0 116 437-568 27-153 (258)
231 PRK14968 putative methyltransf 97.2 0.00073 1.6E-08 64.8 6.3 141 442-588 24-188 (188)
232 PRK08287 cobalt-precorrin-6Y C 97.1 0.0008 1.7E-08 65.4 6.3 111 442-567 32-150 (187)
233 COG2520 Predicted methyltransf 97.1 0.0054 1.2E-07 65.5 13.0 149 167-326 159-313 (341)
234 TIGR00452 methyltransferase, p 97.1 0.0005 1.1E-08 72.8 4.9 96 443-548 123-224 (314)
235 PF03602 Cons_hypoth95: Conser 97.1 0.0022 4.8E-08 62.8 9.0 130 166-303 9-154 (183)
236 PF02475 Met_10: Met-10+ like- 97.1 0.0021 4.6E-08 63.8 8.9 123 166-299 71-199 (200)
237 PF02527 GidB: rRNA small subu 97.1 0.011 2.4E-07 58.0 13.4 92 203-301 51-147 (184)
238 PRK00377 cbiT cobalt-precorrin 97.1 0.0021 4.6E-08 63.2 8.5 145 408-570 8-167 (198)
239 PF01209 Ubie_methyltran: ubiE 97.1 0.00031 6.6E-09 71.4 2.6 113 420-549 33-153 (233)
240 smart00138 MeTrc Methyltransfe 97.1 0.00062 1.3E-08 70.3 4.9 135 410-553 68-246 (264)
241 TIGR03534 RF_mod_PrmC protein- 97.0 0.0009 1.9E-08 67.4 5.5 125 443-570 89-238 (251)
242 TIGR02987 met_A_Alw26 type II 97.0 0.0046 1E-07 69.9 11.7 75 201-275 32-123 (524)
243 TIGR03439 methyl_EasF probable 97.0 0.0058 1.3E-07 64.9 11.4 112 187-302 67-197 (319)
244 COG1092 Predicted SAM-dependen 97.0 0.0049 1.1E-07 67.1 10.8 105 201-307 218-341 (393)
245 TIGR00740 methyltransferase, p 97.0 0.00038 8.2E-09 70.3 2.2 99 443-550 55-162 (239)
246 KOG2352 Predicted spermine/spe 97.0 0.0041 8.8E-08 68.6 10.1 99 203-303 51-162 (482)
247 PRK00517 prmA ribosomal protei 96.9 0.0018 3.9E-08 66.1 7.0 110 443-571 121-236 (250)
248 PRK15001 SAM-dependent 23S rib 96.9 0.021 4.6E-07 62.1 15.3 105 182-302 30-142 (378)
249 COG4627 Uncharacterized protei 96.9 0.00015 3.3E-09 68.4 -1.0 61 247-307 30-91 (185)
250 TIGR02143 trmA_only tRNA (urac 96.9 0.0051 1.1E-07 66.2 10.5 108 184-303 184-312 (353)
251 PF05401 NodS: Nodulation prot 96.9 0.00069 1.5E-08 66.8 3.2 138 436-586 38-192 (201)
252 PTZ00146 fibrillarin; Provisio 96.9 0.0029 6.3E-08 66.2 7.9 98 437-548 130-236 (293)
253 COG0742 N6-adenine-specific me 96.9 0.019 4.1E-07 56.4 12.9 132 167-303 11-155 (187)
254 TIGR01934 MenG_MenH_UbiE ubiqu 96.8 0.0021 4.6E-08 63.1 6.4 97 442-549 40-143 (223)
255 PRK15451 tRNA cmo(5)U34 methyl 96.8 0.00065 1.4E-08 69.2 2.7 98 443-549 58-164 (247)
256 KOG1663 O-methyltransferase [S 96.8 0.011 2.3E-07 59.6 11.2 112 181-301 59-182 (237)
257 TIGR01983 UbiG ubiquinone bios 96.8 0.0017 3.6E-08 64.5 5.4 122 413-549 17-149 (224)
258 PRK05031 tRNA (uracil-5-)-meth 96.8 0.006 1.3E-07 65.9 10.0 107 185-303 194-321 (362)
259 COG0030 KsgA Dimethyladenosine 96.7 0.0077 1.7E-07 62.0 9.6 83 185-272 17-103 (259)
260 PF08242 Methyltransf_12: Meth 96.7 0.00074 1.6E-08 58.3 1.8 90 446-545 1-99 (99)
261 PRK05134 bifunctional 3-demeth 96.7 0.0014 3E-08 65.7 3.8 95 443-549 50-151 (233)
262 TIGR00308 TRM1 tRNA(guanine-26 96.7 0.012 2.6E-07 63.9 11.2 97 202-303 46-148 (374)
263 KOG0820 Ribosomal RNA adenine 96.7 0.011 2.3E-07 61.0 9.9 81 185-272 45-131 (315)
264 COG1189 Predicted rRNA methyla 96.7 0.027 5.8E-07 57.1 12.7 142 181-331 62-222 (245)
265 PRK05785 hypothetical protein; 96.6 0.0029 6.3E-08 63.8 5.6 105 420-543 35-141 (226)
266 PRK09328 N5-glutamine S-adenos 96.6 0.0073 1.6E-07 61.9 8.6 140 443-588 110-275 (275)
267 PRK11873 arsM arsenite S-adeno 96.6 0.0015 3.2E-08 67.3 3.4 93 443-549 79-183 (272)
268 COG2226 UbiE Methylase involve 96.6 0.0015 3.3E-08 66.5 3.1 111 420-548 37-155 (238)
269 PRK00050 16S rRNA m(4)C1402 me 96.6 0.0059 1.3E-07 64.2 7.4 58 186-245 7-64 (296)
270 KOG2915 tRNA(1-methyladenosine 96.5 0.017 3.6E-07 59.6 10.2 128 187-331 94-233 (314)
271 KOG3420 Predicted RNA methylas 96.5 0.006 1.3E-07 57.4 6.4 85 187-275 37-125 (185)
272 KOG1500 Protein arginine N-met 96.5 0.014 2.9E-07 61.6 9.6 97 201-301 178-281 (517)
273 PRK11760 putative 23S rRNA C24 96.5 0.026 5.7E-07 60.2 11.7 93 200-302 211-305 (357)
274 KOG3010 Methyltransferase [Gen 96.5 0.0016 3.4E-08 65.9 2.4 114 440-567 32-158 (261)
275 COG2265 TrmA SAM-dependent met 96.5 0.02 4.3E-07 63.4 11.2 109 186-303 281-397 (432)
276 TIGR00091 tRNA (guanine-N(7)-) 96.4 0.0036 7.9E-08 61.4 4.7 123 443-568 18-153 (194)
277 PRK04266 fibrillarin; Provisio 96.4 0.007 1.5E-07 61.2 6.8 94 437-547 70-174 (226)
278 COG4262 Predicted spermidine s 96.4 0.021 4.5E-07 61.0 10.3 163 166-332 254-435 (508)
279 PF08123 DOT1: Histone methyla 96.4 0.011 2.3E-07 59.1 7.6 116 179-300 23-156 (205)
280 cd02440 AdoMet_MTases S-adenos 96.3 0.0038 8.2E-08 51.8 3.7 95 444-548 1-103 (107)
281 PRK06202 hypothetical protein; 96.3 0.0079 1.7E-07 60.4 6.6 103 438-549 57-166 (232)
282 PRK11783 rlmL 23S rRNA m(2)G24 96.3 0.025 5.3E-07 66.4 11.6 118 185-303 176-348 (702)
283 COG0144 Sun tRNA and rRNA cyto 96.3 0.027 5.8E-07 60.8 10.9 126 193-323 151-306 (355)
284 PRK11188 rrmJ 23S rRNA methylt 96.3 0.009 2E-07 59.6 6.8 132 443-587 53-205 (209)
285 COG4976 Predicted methyltransf 96.3 0.0041 8.8E-08 62.6 4.0 140 438-589 122-286 (287)
286 TIGR00438 rrmJ cell division p 96.2 0.011 2.4E-07 57.5 6.7 132 443-587 34-186 (188)
287 PF13847 Methyltransf_31: Meth 96.2 0.0042 9E-08 58.2 3.6 96 443-551 5-112 (152)
288 PRK14967 putative methyltransf 96.2 0.0092 2E-07 59.8 6.2 124 443-570 38-181 (223)
289 COG0357 GidB Predicted S-adeno 96.1 0.054 1.2E-06 54.4 11.4 120 202-331 69-193 (215)
290 PF10672 Methyltrans_SAM: S-ad 96.1 0.024 5.3E-07 59.3 9.2 100 202-303 125-239 (286)
291 PRK00216 ubiE ubiquinone/menaq 96.1 0.01 2.2E-07 59.0 6.0 97 443-549 53-158 (239)
292 PRK06922 hypothetical protein; 96.1 0.0049 1.1E-07 70.7 4.2 106 443-550 420-538 (677)
293 KOG2798 Putative trehalase [Ca 96.0 0.052 1.1E-06 57.0 10.6 145 184-332 132-336 (369)
294 TIGR02716 C20_methyl_CrtF C-20 95.9 0.0066 1.4E-07 63.7 4.0 103 437-549 145-254 (306)
295 PF00398 RrnaAD: Ribosomal RNA 95.9 0.035 7.6E-07 57.2 9.0 103 183-294 15-123 (262)
296 PRK13942 protein-L-isoaspartat 95.9 0.0047 1E-07 61.6 2.4 87 443-548 78-175 (212)
297 PRK14121 tRNA (guanine-N(7)-)- 95.9 0.012 2.6E-07 64.0 5.6 121 443-568 124-256 (390)
298 PLN02490 MPBQ/MSBQ methyltrans 95.8 0.0069 1.5E-07 64.9 3.6 115 443-568 115-251 (340)
299 TIGR03704 PrmC_rel_meth putati 95.8 0.0093 2E-07 61.2 4.3 132 443-576 88-243 (251)
300 PF03848 TehB: Tellurite resis 95.8 0.0048 1E-07 60.9 2.0 96 443-547 32-131 (192)
301 TIGR02081 metW methionine bios 95.7 0.008 1.7E-07 58.8 3.4 87 444-541 16-104 (194)
302 PRK04457 spermidine synthase; 95.7 0.036 7.8E-07 57.2 8.3 139 440-588 65-216 (262)
303 KOG1709 Guanidinoacetate methy 95.6 0.08 1.7E-06 53.0 9.7 112 184-301 88-205 (271)
304 COG2890 HemK Methylase of poly 95.6 0.06 1.3E-06 56.2 9.3 163 415-588 92-276 (280)
305 TIGR00536 hemK_fam HemK family 95.6 0.068 1.5E-06 55.7 9.7 141 443-589 116-283 (284)
306 TIGR00080 pimt protein-L-isoas 95.5 0.015 3.3E-07 57.9 4.3 86 443-548 79-176 (215)
307 COG0116 Predicted N6-adenine-s 95.5 0.16 3.4E-06 55.1 12.2 115 187-303 180-345 (381)
308 TIGR02021 BchM-ChlM magnesium 95.4 0.024 5.2E-07 56.4 5.5 100 442-551 56-160 (219)
309 PF05958 tRNA_U5-meth_tr: tRNA 95.4 0.049 1.1E-06 58.7 8.1 67 185-257 184-255 (352)
310 PRK07580 Mg-protoporphyrin IX 95.4 0.018 3.9E-07 57.2 4.5 100 442-551 64-168 (230)
311 PF01269 Fibrillarin: Fibrilla 95.3 0.11 2.4E-06 52.4 9.7 142 184-331 56-210 (229)
312 PF06325 PrmA: Ribosomal prote 95.3 0.033 7.1E-07 58.7 6.3 128 443-589 163-295 (295)
313 PF07021 MetW: Methionine bios 95.3 0.013 2.7E-07 57.8 2.9 100 433-548 7-108 (193)
314 COG0293 FtsJ 23S rRNA methylas 95.3 0.099 2.1E-06 52.1 9.1 109 187-302 33-159 (205)
315 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.2 0.028 6.1E-07 58.8 5.6 125 202-329 87-244 (283)
316 TIGR03587 Pse_Me-ase pseudamin 95.2 0.024 5.2E-07 56.4 4.7 94 442-548 44-141 (204)
317 PRK11805 N5-glutamine S-adenos 95.2 0.037 8.1E-07 58.5 6.4 119 443-566 135-281 (307)
318 PRK13944 protein-L-isoaspartat 95.2 0.023 5.1E-07 56.2 4.5 90 443-548 74-172 (205)
319 TIGR02469 CbiT precorrin-6Y C5 95.2 0.03 6.6E-07 49.5 4.8 90 443-548 21-121 (124)
320 PF00891 Methyltransf_2: O-met 95.1 0.023 5E-07 57.4 4.5 101 436-549 95-199 (241)
321 PF04816 DUF633: Family of unk 95.1 0.29 6.2E-06 48.9 12.1 115 204-331 1-122 (205)
322 COG3897 Predicted methyltransf 95.1 0.17 3.7E-06 50.1 10.0 96 201-303 80-180 (218)
323 TIGR03533 L3_gln_methyl protei 95.1 0.067 1.4E-06 55.9 7.8 121 443-569 123-270 (284)
324 PF01728 FtsJ: FtsJ-like methy 95.0 0.033 7.2E-07 53.7 5.1 146 437-588 19-180 (181)
325 PRK14966 unknown domain/N5-glu 95.0 0.11 2.3E-06 57.3 9.3 140 444-589 254-419 (423)
326 PF13679 Methyltransf_32: Meth 94.9 0.057 1.2E-06 50.3 6.0 94 200-303 25-132 (141)
327 PF05148 Methyltransf_8: Hypot 94.8 0.03 6.5E-07 55.9 4.1 110 442-574 73-186 (219)
328 COG2230 Cfa Cyclopropane fatty 94.8 0.022 4.9E-07 59.3 3.3 97 437-548 70-175 (283)
329 PF04672 Methyltransf_19: S-ad 94.7 0.14 3E-06 53.1 8.6 103 200-303 68-191 (267)
330 COG5459 Predicted rRNA methyla 94.6 0.12 2.6E-06 55.1 8.1 125 187-320 102-238 (484)
331 PRK00312 pcm protein-L-isoaspa 94.6 0.038 8.2E-07 54.7 4.2 87 442-548 79-174 (212)
332 PF05175 MTS: Methyltransferas 94.4 0.061 1.3E-06 51.6 5.0 113 442-562 32-155 (170)
333 PF09445 Methyltransf_15: RNA 94.3 0.1 2.3E-06 50.2 6.5 67 203-272 2-77 (163)
334 PLN02668 indole-3-acetate carb 94.1 0.35 7.7E-06 52.7 10.6 19 259-278 157-175 (386)
335 PF13578 Methyltransf_24: Meth 94.0 0.018 3.9E-07 50.5 0.5 95 205-301 1-104 (106)
336 PF03059 NAS: Nicotianamine sy 93.9 0.51 1.1E-05 49.3 11.0 102 201-302 121-230 (276)
337 TIGR03438 probable methyltrans 93.9 0.063 1.4E-06 56.5 4.3 112 427-548 51-176 (301)
338 PF02390 Methyltransf_4: Putat 93.8 0.018 3.9E-07 56.9 0.1 119 443-569 19-156 (195)
339 COG4798 Predicted methyltransf 93.8 0.13 2.9E-06 50.8 6.0 136 192-331 42-203 (238)
340 KOG3045 Predicted RNA methylas 93.7 0.071 1.5E-06 54.7 4.2 107 444-574 183-292 (325)
341 KOG3115 Methyltransferase-like 93.7 0.16 3.5E-06 50.5 6.5 98 203-302 63-183 (249)
342 PRK07402 precorrin-6B methylas 93.7 0.6 1.3E-05 45.6 10.7 39 526-564 119-158 (196)
343 PF13659 Methyltransf_26: Meth 93.7 0.016 3.4E-07 51.2 -0.5 99 444-547 3-113 (117)
344 PF13649 Methyltransf_25: Meth 93.6 0.0098 2.1E-07 51.7 -1.8 92 445-543 1-101 (101)
345 TIGR01444 fkbM_fam methyltrans 93.5 0.11 2.4E-06 47.6 4.9 41 203-244 1-41 (143)
346 COG1064 AdhP Zn-dependent alco 93.5 0.34 7.4E-06 51.9 9.1 93 202-304 168-261 (339)
347 PF07091 FmrO: Ribosomal RNA m 93.5 0.52 1.1E-05 48.4 9.9 124 201-329 106-240 (251)
348 KOG2187 tRNA uracil-5-methyltr 93.4 0.098 2.1E-06 58.3 5.0 69 183-256 368-441 (534)
349 KOG1122 tRNA and rRNA cytosine 93.4 0.68 1.5E-05 50.7 11.0 131 197-331 238-398 (460)
350 PRK14902 16S rRNA methyltransf 93.3 0.077 1.7E-06 58.8 4.1 103 443-548 252-378 (444)
351 PF05219 DREV: DREV methyltran 93.1 0.14 2.9E-06 52.9 5.1 90 441-548 94-187 (265)
352 TIGR01177 conserved hypothetic 93.1 0.074 1.6E-06 56.6 3.3 118 443-566 184-309 (329)
353 COG2227 UbiG 2-polyprenyl-3-me 93.0 0.083 1.8E-06 53.7 3.4 93 444-549 62-161 (243)
354 PF05971 Methyltransf_10: Prot 92.9 0.47 1E-05 50.0 8.9 108 168-276 66-189 (299)
355 TIGR00563 rsmB ribosomal RNA s 92.7 0.16 3.4E-06 56.2 5.4 112 443-557 240-383 (426)
356 COG0500 SmtA SAM-dependent met 92.6 0.24 5.3E-06 42.5 5.4 94 445-551 52-157 (257)
357 COG2813 RsmC 16S RNA G1207 met 92.6 0.9 1.9E-05 47.9 10.4 107 444-561 161-280 (300)
358 COG4123 Predicted O-methyltran 92.5 0.33 7.2E-06 49.8 6.9 131 438-570 41-191 (248)
359 KOG1540 Ubiquinone biosynthesi 92.3 0.23 5E-06 51.0 5.5 114 437-561 96-227 (296)
360 PRK13255 thiopurine S-methyltr 92.2 0.21 4.5E-06 50.3 5.0 95 443-547 39-153 (218)
361 PF08003 Methyltransf_9: Prote 91.9 0.25 5.3E-06 52.1 5.3 134 390-548 78-218 (315)
362 PRK00811 spermidine synthase; 91.9 0.45 9.7E-06 49.7 7.3 103 437-548 72-190 (283)
363 PF03492 Methyltransf_7: SAM d 91.8 0.37 8.1E-06 51.6 6.7 80 197-278 13-120 (334)
364 PRK13699 putative methylase; P 91.6 0.52 1.1E-05 47.7 7.2 83 250-343 4-102 (227)
365 TIGR00478 tly hemolysin TlyA f 91.4 0.22 4.8E-06 50.5 4.3 108 443-571 77-215 (228)
366 cd00315 Cyt_C5_DNA_methylase C 91.3 3.4 7.3E-05 43.0 13.0 127 203-334 2-144 (275)
367 TIGR03840 TMPT_Se_Te thiopurin 91.0 0.18 3.8E-06 50.6 3.1 95 443-547 36-150 (213)
368 KOG2198 tRNA cytosine-5-methyl 91.0 1.4 3.1E-05 47.5 10.0 111 201-311 156-305 (375)
369 COG3129 Predicted SAM-dependen 91.0 1.1 2.3E-05 45.7 8.4 111 165-276 38-165 (292)
370 KOG4589 Cell division protein 90.9 1.2 2.6E-05 43.9 8.5 100 201-311 70-189 (232)
371 PF10294 Methyltransf_16: Puta 90.9 0.16 3.5E-06 49.0 2.6 107 441-559 45-172 (173)
372 TIGR00417 speE spermidine synt 90.6 0.6 1.3E-05 48.3 6.7 101 439-548 70-185 (270)
373 KOG1562 Spermidine synthase [A 90.1 0.63 1.4E-05 48.8 6.2 101 200-302 121-236 (337)
374 PLN03075 nicotianamine synthas 90.1 0.68 1.5E-05 48.8 6.6 139 441-590 123-276 (296)
375 COG4076 Predicted RNA methylas 89.9 0.64 1.4E-05 45.9 5.7 92 203-299 35-132 (252)
376 PRK10901 16S rRNA methyltransf 89.9 0.43 9.3E-06 52.8 5.2 105 443-548 246-371 (427)
377 TIGR00446 nop2p NOL1/NOP2/sun 89.8 0.29 6.3E-06 50.5 3.5 102 443-548 73-198 (264)
378 PF03514 GRAS: GRAS domain fam 89.7 6.8 0.00015 42.7 14.2 118 189-309 101-250 (374)
379 PF06962 rRNA_methylase: Putat 89.3 1.8 4E-05 40.7 8.1 91 228-324 2-113 (140)
380 cd08283 FDH_like_1 Glutathione 88.9 3.5 7.6E-05 44.5 11.2 99 202-303 186-307 (386)
381 PLN02781 Probable caffeoyl-CoA 88.6 0.38 8.3E-06 48.8 3.3 34 502-547 143-176 (234)
382 PLN02366 spermidine synthase 88.3 2.2 4.7E-05 45.3 8.9 104 439-548 89-205 (308)
383 PRK14904 16S rRNA methyltransf 88.1 0.62 1.3E-05 51.8 4.8 101 443-548 252-376 (445)
384 KOG4300 Predicted methyltransf 87.9 1.1 2.3E-05 45.0 5.8 125 420-557 51-194 (252)
385 cd08254 hydroxyacyl_CoA_DH 6-h 87.8 3.9 8.5E-05 42.4 10.5 92 202-303 167-264 (338)
386 PF03269 DUF268: Caenorhabditi 87.7 0.31 6.8E-06 46.8 1.9 42 262-303 61-112 (177)
387 COG2264 PrmA Ribosomal protein 87.7 1.7 3.8E-05 45.8 7.6 118 441-572 162-287 (300)
388 PRK01581 speE spermidine synth 87.5 1.7 3.7E-05 47.2 7.6 107 438-550 147-269 (374)
389 COG4301 Uncharacterized conser 87.3 6.1 0.00013 40.7 10.8 100 201-302 79-193 (321)
390 PLN02232 ubiquinone biosynthes 87.1 0.45 9.7E-06 45.3 2.6 47 495-550 36-82 (160)
391 TIGR00006 S-adenosyl-methyltra 87.0 2.7 5.7E-05 44.6 8.5 57 185-244 7-63 (305)
392 COG0286 HsdM Type I restrictio 87.0 5.7 0.00012 44.9 11.7 118 184-303 172-327 (489)
393 PHA01634 hypothetical protein 87.0 5.2 0.00011 37.3 9.2 42 201-244 29-70 (156)
394 PRK11524 putative methyltransf 86.9 1.5 3.3E-05 45.7 6.7 54 249-302 10-80 (284)
395 PF02005 TRM: N2,N2-dimethylgu 86.5 2.4 5.2E-05 46.3 8.2 129 170-303 12-155 (377)
396 PRK13943 protein-L-isoaspartat 85.5 0.51 1.1E-05 50.4 2.3 19 443-461 82-100 (322)
397 PRK09880 L-idonate 5-dehydroge 85.0 4.4 9.6E-05 42.8 9.2 93 202-303 171-267 (343)
398 PF06080 DUF938: Protein of un 84.8 3.1 6.8E-05 41.6 7.3 141 433-588 18-204 (204)
399 PRK14903 16S rRNA methyltransf 84.8 0.81 1.8E-05 50.8 3.5 127 414-548 213-365 (431)
400 COG2384 Predicted SAM-dependen 84.6 15 0.00033 37.2 12.0 128 187-331 7-141 (226)
401 COG1889 NOP1 Fibrillarin-like 84.4 15 0.00032 37.0 11.6 140 184-331 59-212 (231)
402 PF01861 DUF43: Protein of unk 84.4 48 0.001 34.1 15.7 163 201-376 45-216 (243)
403 KOG2730 Methylase [General fun 84.4 2.5 5.5E-05 42.7 6.4 89 203-297 97-197 (263)
404 PF06859 Bin3: Bicoid-interact 84.3 0.55 1.2E-05 42.3 1.6 39 264-302 1-44 (110)
405 KOG2793 Putative N2,N2-dimethy 84.3 7.9 0.00017 39.9 10.2 100 201-303 87-200 (248)
406 KOG2904 Predicted methyltransf 84.3 8.1 0.00017 40.5 10.1 162 418-588 129-327 (328)
407 PF10354 DUF2431: Domain of un 84.2 16 0.00036 35.1 11.9 118 207-331 3-150 (166)
408 COG1565 Uncharacterized conser 84.1 2.4 5.3E-05 45.7 6.6 79 164-244 43-128 (370)
409 PF05185 PRMT5: PRMT5 arginine 84.0 1.4 3.1E-05 49.1 5.0 141 409-560 150-317 (448)
410 PLN02585 magnesium protoporphy 82.9 1.7 3.6E-05 46.4 4.8 93 443-546 146-247 (315)
411 KOG1099 SAM-dependent methyltr 82.8 1.1 2.4E-05 45.5 3.2 113 201-323 42-182 (294)
412 PHA03411 putative methyltransf 81.9 1.5 3.2E-05 45.9 3.9 101 443-548 66-182 (279)
413 PF00107 ADH_zinc_N: Zinc-bind 81.5 3.5 7.6E-05 36.8 5.8 85 210-303 1-90 (130)
414 PRK03612 spermidine synthase; 81.5 2.1 4.5E-05 48.7 5.2 123 440-567 296-438 (521)
415 KOG0822 Protein kinase inhibit 81.3 4.8 0.0001 45.5 7.6 99 201-300 368-476 (649)
416 PHA03412 putative methyltransf 80.8 2 4.3E-05 44.0 4.3 99 443-546 51-160 (241)
417 TIGR02822 adh_fam_2 zinc-bindi 80.3 14 0.0003 39.0 10.8 88 201-303 166-255 (329)
418 PRK10742 putative methyltransf 80.1 5.7 0.00012 40.9 7.3 86 188-276 76-176 (250)
419 PRK14901 16S rRNA methyltransf 79.8 2.8 6E-05 46.5 5.4 117 443-563 254-402 (434)
420 PRK13168 rumA 23S rRNA m(5)U19 79.7 8.8 0.00019 42.7 9.3 129 443-588 299-442 (443)
421 cd08230 glucose_DH Glucose deh 79.6 11 0.00025 39.8 9.9 90 202-303 174-270 (355)
422 PF04989 CmcI: Cephalosporin h 78.9 7.4 0.00016 39.0 7.5 100 201-302 33-147 (206)
423 PF00145 DNA_methylase: C-5 cy 78.9 11 0.00023 39.1 9.2 129 203-336 2-145 (335)
424 PRK09424 pntA NAD(P) transhydr 78.6 12 0.00026 42.6 10.0 99 201-303 165-286 (509)
425 KOG0024 Sorbitol dehydrogenase 78.1 11 0.00025 40.2 8.9 94 202-302 171-273 (354)
426 KOG2539 Mitochondrial/chloropl 77.8 4.3 9.2E-05 45.2 5.9 102 201-303 201-316 (491)
427 TIGR00675 dcm DNA-methyltransf 76.3 19 0.00041 38.2 10.3 126 204-334 1-141 (315)
428 PF07757 AdoMet_MTase: Predict 76.2 4.1 8.9E-05 36.7 4.3 28 201-228 59-86 (112)
429 PRK11933 yebU rRNA (cytosine-C 76.0 2.8 6.1E-05 47.1 4.1 102 443-548 115-241 (470)
430 cd05188 MDR Medium chain reduc 75.9 20 0.00044 35.3 9.9 94 201-303 135-233 (271)
431 KOG1271 Methyltransferases [Ge 75.3 5.9 0.00013 39.2 5.5 109 444-560 70-192 (227)
432 cd08245 CAD Cinnamyl alcohol d 74.9 26 0.00055 36.4 10.7 92 202-303 164-257 (330)
433 COG1867 TRM1 N2,N2-dimethylgua 74.6 10 0.00022 41.2 7.6 97 201-303 53-155 (380)
434 TIGR03451 mycoS_dep_FDH mycoth 74.5 19 0.00042 38.2 9.9 92 202-303 178-277 (358)
435 PF01555 N6_N4_Mtase: DNA meth 74.4 5.9 0.00013 38.5 5.5 55 183-243 177-231 (231)
436 PF05891 Methyltransf_PK: AdoM 73.9 2.5 5.5E-05 42.6 2.7 103 440-551 54-163 (218)
437 KOG2920 Predicted methyltransf 73.8 2.9 6.2E-05 43.7 3.2 117 183-303 98-235 (282)
438 PRK15128 23S rRNA m(5)C1962 me 73.2 5.2 0.00011 44.0 5.2 127 443-571 222-367 (396)
439 TIGR02825 B4_12hDH leukotriene 73.0 33 0.00072 35.6 11.1 91 202-303 140-238 (325)
440 PF03291 Pox_MCEL: mRNA cappin 72.8 1 2.3E-05 48.2 -0.3 53 502-559 144-198 (331)
441 KOG3115 Methyltransferase-like 72.5 5 0.00011 40.2 4.3 22 530-551 164-185 (249)
442 cd08234 threonine_DH_like L-th 71.8 32 0.0007 35.6 10.6 92 202-303 161-258 (334)
443 cd08281 liver_ADH_like1 Zinc-d 71.6 21 0.00046 38.1 9.4 93 202-303 193-291 (371)
444 cd08237 ribitol-5-phosphate_DH 71.1 18 0.00039 38.3 8.6 93 201-303 164-257 (341)
445 COG0220 Predicted S-adenosylme 71.0 5.7 0.00012 40.4 4.6 116 443-563 50-180 (227)
446 cd08232 idonate-5-DH L-idonate 70.9 24 0.00052 36.8 9.4 94 201-303 166-263 (339)
447 PRK11524 putative methyltransf 70.8 8.6 0.00019 40.1 6.0 56 184-245 195-250 (284)
448 PF04445 SAM_MT: Putative SAM- 70.4 10 0.00022 38.8 6.1 86 188-276 63-163 (234)
449 TIGR03366 HpnZ_proposed putati 70.0 26 0.00056 35.9 9.3 92 202-303 122-219 (280)
450 PLN02476 O-methyltransferase 69.7 4.5 9.7E-05 42.4 3.5 133 439-589 116-278 (278)
451 PF02527 GidB: rRNA small subu 69.0 6.6 0.00014 38.6 4.4 135 418-571 27-173 (184)
452 cd08239 THR_DH_like L-threonin 68.8 29 0.00063 36.3 9.5 93 202-303 165-263 (339)
453 PLN03154 putative allyl alcoho 68.6 40 0.00087 35.9 10.6 91 202-303 160-259 (348)
454 KOG2940 Predicted methyltransf 68.3 2.3 4.9E-05 43.3 1.0 100 440-548 71-173 (325)
455 PF01269 Fibrillarin: Fibrilla 68.0 10 0.00022 38.6 5.4 131 443-586 75-224 (229)
456 PF01135 PCMT: Protein-L-isoas 66.8 4.7 0.0001 40.4 2.9 99 427-547 62-170 (209)
457 PRK13699 putative methylase; P 66.3 13 0.00028 37.6 6.0 55 184-244 150-204 (227)
458 COG1063 Tdh Threonine dehydrog 65.1 26 0.00056 37.6 8.4 93 203-303 171-270 (350)
459 TIGR00561 pntA NAD(P) transhyd 65.1 16 0.00036 41.5 7.0 95 201-301 164-283 (511)
460 COG0275 Predicted S-adenosylme 64.9 32 0.00069 36.6 8.6 60 184-245 9-68 (314)
461 TIGR00479 rumA 23S rRNA (uraci 64.6 11 0.00023 41.7 5.5 111 443-569 294-416 (431)
462 PF01795 Methyltransf_5: MraW 64.5 24 0.00051 37.7 7.7 95 186-302 8-102 (310)
463 TIGR01202 bchC 2-desacetyl-2-h 63.7 31 0.00067 35.9 8.5 85 202-303 146-232 (308)
464 PLN02740 Alcohol dehydrogenase 63.5 45 0.00097 35.9 9.9 93 202-303 200-301 (381)
465 COG0270 Dcm Site-specific DNA 62.7 60 0.0013 34.6 10.5 123 202-327 4-141 (328)
466 cd00401 AdoHcyase S-adenosyl-L 62.4 34 0.00073 38.0 8.7 99 187-303 189-290 (413)
467 smart00650 rADc Ribosomal RNA 61.9 8.5 0.00018 36.6 3.6 94 443-550 15-114 (169)
468 COG4627 Uncharacterized protei 61.6 2.8 6E-05 40.3 0.1 45 495-548 41-85 (185)
469 cd05564 PTS_IIB_chitobiose_lic 61.3 19 0.00041 31.4 5.3 75 207-303 4-78 (96)
470 KOG1253 tRNA methyltransferase 60.9 5.7 0.00012 44.5 2.4 98 201-303 110-217 (525)
471 PRK10458 DNA cytosine methylas 60.6 1.9E+02 0.0041 32.7 14.3 125 201-329 88-255 (467)
472 COG0604 Qor NADPH:quinone redu 60.3 37 0.0008 36.2 8.4 97 194-303 138-242 (326)
473 KOG2361 Predicted methyltransf 59.8 5.6 0.00012 40.8 1.9 99 444-551 74-185 (264)
474 cd08255 2-desacetyl-2-hydroxye 59.4 58 0.0013 32.7 9.4 91 202-303 99-191 (277)
475 cd08294 leukotriene_B4_DH_like 59.1 75 0.0016 32.7 10.4 89 202-302 145-241 (329)
476 COG2242 CobL Precorrin-6B meth 58.8 1.1E+02 0.0023 30.4 10.5 44 526-569 112-157 (187)
477 TIGR00497 hsdM type I restrict 58.7 81 0.0018 35.7 11.2 117 187-303 204-356 (501)
478 PF07942 N2227: N2227-like pro 58.7 9.1 0.0002 39.9 3.3 45 527-571 180-240 (270)
479 KOG1541 Predicted protein carb 58.6 41 0.00089 34.4 7.7 124 437-567 46-178 (270)
480 PRK10309 galactitol-1-phosphat 57.7 58 0.0012 34.3 9.3 93 202-303 162-261 (347)
481 PLN02827 Alcohol dehydrogenase 57.2 74 0.0016 34.3 10.3 93 202-303 195-296 (378)
482 KOG2651 rRNA adenine N-6-methy 57.0 22 0.00048 38.9 5.9 40 201-242 154-193 (476)
483 TIGR02818 adh_III_F_hyde S-(hy 57.0 59 0.0013 34.8 9.4 93 202-303 187-288 (368)
484 PRK01747 mnmC bifunctional tRN 56.7 83 0.0018 36.8 11.2 57 263-331 165-225 (662)
485 TIGR03201 dearomat_had 6-hydro 56.5 73 0.0016 33.6 9.9 93 201-303 167-273 (349)
486 TIGR00853 pts-lac PTS system, 56.1 27 0.00058 30.5 5.3 78 203-303 5-82 (95)
487 PLN02586 probable cinnamyl alc 55.8 52 0.0011 35.2 8.7 92 202-303 185-279 (360)
488 cd08295 double_bond_reductase_ 55.6 87 0.0019 32.8 10.2 90 202-302 153-251 (338)
489 PF01555 N6_N4_Mtase: DNA meth 55.5 19 0.00042 34.9 5.0 52 281-341 35-87 (231)
490 cd05565 PTS_IIB_lactose PTS_II 55.4 16 0.00034 32.4 3.8 75 207-303 5-79 (99)
491 PRK10611 chemotaxis methyltran 55.3 5.2 0.00011 42.1 0.9 46 501-553 221-266 (287)
492 PTZ00357 methyltransferase; Pr 55.1 80 0.0017 37.4 10.1 93 203-297 703-830 (1072)
493 cd08293 PTGR2 Prostaglandin re 54.4 89 0.0019 32.6 10.1 90 202-302 156-254 (345)
494 PRK03522 rumB 23S rRNA methylu 54.3 27 0.00058 36.9 6.1 127 443-588 175-314 (315)
495 cd08300 alcohol_DH_class_III c 53.0 95 0.0021 33.1 10.2 93 202-303 188-289 (368)
496 cd08261 Zn_ADH7 Alcohol dehydr 52.6 97 0.0021 32.2 10.0 92 202-303 161-259 (337)
497 COG2518 Pcm Protein-L-isoaspar 52.6 11 0.00024 37.9 2.6 98 427-547 62-167 (209)
498 KOG4058 Uncharacterized conser 52.4 68 0.0015 30.9 7.6 76 190-269 64-145 (199)
499 COG4122 Predicted O-methyltran 52.2 12 0.00027 37.8 3.0 142 427-589 48-218 (219)
500 cd08242 MDR_like Medium chain 51.9 1.1E+02 0.0024 31.4 10.2 87 202-302 157-245 (319)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=7.9e-159 Score=1266.75 Aligned_cols=495 Identities=53% Similarity=1.032 Sum_probs=479.6
Q ss_pred CccccCCchhhhhh--hhhhhhhhcCCCCCCCCCCceecCCCCCCCCCCCCCcccccccccCCCcchhhhcccccccccc
Q 007645 88 DHMPCEDPRRNSQL--SREMNFYRERHCPLPDQTPLCLIPPPRGYKIPVPWPESLSKIWHANMPYNKIADRKGHQGWMKE 165 (595)
Q Consensus 88 ~y~pc~d~~~~~~~--~~~~~~~~~r~C~~~~~r~~Clv~~P~~y~~P~~wP~s~d~vwy~n~p~~~L~~~k~~q~w~~~ 165 (595)
|||||+|+.+++++ ++++++|+|||||+.+++++||||+|++|+.|++||+|||++||+|+||+.|+++|+.|+|++.
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~ 80 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRV 80 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceee
Confidence 79999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeecCCCCCcccccHHHHHHHHHhhccc--cCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHH
Q 007645 166 SGPYFTFPGGGTMFADGADKYIDKLKQYIPI--TGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE 243 (595)
Q Consensus 166 e~~~~~fp~~g~~F~~~a~~yi~~L~~~l~~--~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~e 243 (595)
+++++.|||+|++|.+|+++|++.|.++++. ..+.+|++||||||+|+|+++|+++++.++++++.|.+++++|+|+|
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence 9999999999999999999999999999998 77889999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCC---chhHHHHHHH
Q 007645 244 RGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQ---DKEWADLQAV 320 (595)
Q Consensus 244 rg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~---~~~w~~l~~l 320 (595)
||+++.+.....++||||+++||+|||++|+.+|..+.+.+|.|++|+|||||+|++++||.+.... ...|..|+++
T Consensus 161 RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l 240 (506)
T PF03141_consen 161 RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDL 240 (506)
T ss_pred cCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988889999999999999999999999984332 2349999999
Q ss_pred HHHcCcEEEEeecceeEeeccCCcccccccC-CCCCCCCCCCCCCCCcccccccccccCCccccccccCCCCCCCCcccC
Q 007645 321 ARALCYELIAVDGNTVIWKKPVGESCLSNQN-EFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQRLT 399 (595)
Q Consensus 321 a~~~~w~~v~~~~~~~iw~K~~~~~c~~~~~-~~~~p~C~~~~~~~~~wy~~l~~c~~~~~~~~~~~~~~~~~~wp~rl~ 399 (595)
+++|||++++++++++|||||.+++||.+|. .+.||+|++++|||++||++|++||||+|++.++.+++++++||+||+
T Consensus 241 ~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~WP~RL~ 320 (506)
T PF03141_consen 241 AKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPKWPERLN 320 (506)
T ss_pred HHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCCChhhhc
Confidence 9999999999999999999999999999865 489999998899999999999999999999888999999999999999
Q ss_pred CCCccccc---cccChhhhhhhhhhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCCC
Q 007645 400 KAPSRALV---MKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSS 476 (595)
Q Consensus 400 ~~p~~~~~---~~~~~~~f~~d~~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~~ 476 (595)
++|+||+. .|+++|.|++|+++|+++|++|++++...+++++||||||||||+|||||||.++|||||||||.+++|
T Consensus 321 ~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~n 400 (506)
T PF03141_consen 321 AVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPN 400 (506)
T ss_pred cCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEEEecccCCCC
Confidence 99999974 899999999999999999999999888789999999999999999999999999999999999999999
Q ss_pred chhHHhhccchhhhcccCCCCCCCCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCChHHHHH
Q 007645 477 TLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDK 556 (595)
Q Consensus 477 ~l~~i~eRGlig~~~~wce~f~typrtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~~~~~ 556 (595)
||++||||||||+||||||+|||||||||||||+++||.|+ +||+|++|||||||||||||++||||+.+++++
T Consensus 401 tL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~------~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~ 474 (506)
T PF03141_consen 401 TLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYK------DRCEMEDILLEMDRILRPGGWVIIRDTVDVLEK 474 (506)
T ss_pred cchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhc------ccccHHHHHHHhHhhcCCCceEEEeccHHHHHH
Confidence 99999999999999999999999999999999999999997 999999999999999999999999999999999
Q ss_pred HHHhHhccCceeEEeccCCCCCCCceEEEEEe
Q 007645 557 VSRIANTVRWTAAVHDKEPGSNGREKILVATK 588 (595)
Q Consensus 557 ~~~~~~~~~W~~~~~~~~~~~~~~~~~l~~~K 588 (595)
|++|+++|||+++++|+|+|++++||||||||
T Consensus 475 v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 475 VKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred HHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 99999999999999999999999999999998
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=7.6e-38 Score=336.00 Aligned_cols=197 Identities=19% Similarity=0.296 Sum_probs=165.5
Q ss_pred cccccccCCccccccccCCCCCCCCcc------cCCCCccccccccChh---------hhhhhhhhHHHHHHHHHHHhhh
Q 007645 371 KLKKCVSGTSSVKGEYAVGTIPKWPQR------LTKAPSRALVMKNGYD---------VFEADSRRWRRRVAYYKNTLNV 435 (595)
Q Consensus 371 ~l~~c~~~~~~~~~~~~~~~~~~wp~r------l~~~p~~~~~~~~~~~---------~f~~d~~~w~~~v~~y~~~l~~ 435 (595)
....|+.|+|.+|+ .+.+||+. -|++.++|+..+..++ .|.-....+++++.+|++.|.+
T Consensus 33 ~~~~CLVp~P~gYk-----~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~Yid~i~~ 107 (506)
T PF03141_consen 33 ERLRCLVPPPKGYK-----TPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRVEGDKFRFPGGGTMFPHGADHYIDQIAE 107 (506)
T ss_pred CCCccccCCCccCC-----CCCCCCcccceeeecccCchHHhhhcccccceeecCCEEEeCCCCccccCCHHHHHHHHHH
Confidence 56789999999887 78999994 3778888865444333 4666666779999999988887
Q ss_pred ccC----CCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccchhhhc---ccCCCCCCCCCccchh
Q 007645 436 KLG----TPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYH---DWCEPFSTYPRTYDLI 507 (595)
Q Consensus 436 ~~~----~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~---~wce~f~typrtyDl~ 507 (595)
++. .++||++||+|||+|||||+|++++|.+|+++|.+.| +|+|||+|||+.+++. +...+|+. ++|||+
T Consensus 108 ~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~--~~fDmv 185 (506)
T PF03141_consen 108 MIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPS--NAFDMV 185 (506)
T ss_pred HhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCc--cchhhh
Confidence 774 4999999999999999999999999999999999998 9999999999765553 33444333 999999
Q ss_pred hccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe----------CChHHHHHHHHhHhccCceeEEeccCCCC
Q 007645 508 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR----------DSPEVIDKVSRIANTVRWTAAVHDKEPGS 577 (595)
Q Consensus 508 H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r----------d~~~~~~~~~~~~~~~~W~~~~~~~~~~~ 577 (595)
||++|.+.|+ . .-+.+|+|+|||||||||||++ |..+++++|+++|++|||+..+.
T Consensus 186 Hcsrc~i~W~------~--~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~------ 251 (506)
T PF03141_consen 186 HCSRCLIPWH------P--NDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAE------ 251 (506)
T ss_pred hcccccccch------h--cccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhee------
Confidence 9999999998 1 1246999999999999999997 34588999999999999999998
Q ss_pred CCCceEEEEEecc
Q 007645 578 NGREKILVATKSL 590 (595)
Q Consensus 578 ~~~~~~l~~~K~~ 590 (595)
+.+++||||+.
T Consensus 252 --~~~~aIwqKp~ 262 (506)
T PF03141_consen 252 --KGDTAIWQKPT 262 (506)
T ss_pred --eCCEEEEeccC
Confidence 67799999984
No 3
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.75 E-value=1.4e-17 Score=184.01 Aligned_cols=318 Identities=16% Similarity=0.177 Sum_probs=172.7
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---CCeEEEEcccc--cCCCCC
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTR--RLPFPA 262 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---~~~~~~~~d~~--~LPfpd 262 (595)
..+.+.++...+. +|||+|||+|.++..|++.. ..++++|+++.+++.+++.. .++.+.+.++. .+++++
T Consensus 27 ~~il~~l~~~~~~--~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 27 PEILSLLPPYEGK--SVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hHHHhhcCccCCC--EEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCC
Confidence 3445555544433 89999999999999999874 37889999999999886542 34677777764 578888
Q ss_pred CceeEEEEcCCCcccccC-HHHHHHHHHhhcCCCcEEEEEcCCCCCC---------CCchhHHHHHHHHHHcCcEEEEee
Q 007645 263 FSFDIVHCSRCLIPFTAY-NATYLIEVDRLLRPGGYLVISGPPVQWP---------KQDKEWADLQAVARALCYELIAVD 332 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~d-~~~~L~Ei~RvLRPGG~lvls~p~~~~~---------~~~~~w~~l~~la~~~~w~~v~~~ 332 (595)
++||+|+|..+++|+.++ ...++.++.|+|||||++++.+...... .....-....+++.+.++......
T Consensus 102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 181 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGN 181 (475)
T ss_pred CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCC
Confidence 999999999999887632 4689999999999999999976422111 000011224445555554443221
Q ss_pred cc-e-eEeeccCCcccccccCCCCCCCCCCCCCCCCcccccccccccCCccccccccCCCCCCCCcccCCCCcccccccc
Q 007645 333 GN-T-VIWKKPVGESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQRLTKAPSRALVMKN 410 (595)
Q Consensus 333 ~~-~-~iw~K~~~~~c~~~~~~~~~p~C~~~~~~~~~wy~~l~~c~~~~~~~~~~~~~~~~~~wp~rl~~~p~~~~~~~~ 410 (595)
.. + ..+.+..+. |.+...+.--+|.....-+..=...+..++ +|+.-.++.+.
T Consensus 182 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~y~~~~i~---- 236 (475)
T PLN02336 182 SFELSLVGCKCIGA--YVKNKKNQNQICWLWQKVSSTNDKGFQRFL-------------------DNVQYKSSGIL---- 236 (475)
T ss_pred EEEEEEEEeechhh--hhhccCCcceEEEEEEeecCCcchhHHHHh-------------------hhhccccccHH----
Confidence 11 0 011111111 111101100011100000000001111111 11111112110
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc--cc-
Q 007645 411 GYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR--GL- 486 (595)
Q Consensus 411 ~~~~f~~d~~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR--Gl- 486 (595)
..+.|-...-.+...|..-..++. .+.-+.-..|||+|||.|+++..|.+.. -.+|+-.|-. ..|..+-++ |+
T Consensus 237 ~~~~f~g~~~~v~~~v~~te~l~~-~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~ 313 (475)
T PLN02336 237 RYERVFGEGFVSTGGLETTKEFVD-KLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRK 313 (475)
T ss_pred HHHHHhCCCCCCCchHHHHHHHHH-hcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCC
Confidence 111111111111112211111111 1212234689999999999988886542 1134444433 555555443 21
Q ss_pred --hh-hhcccCCCCCCCC-CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 487 --IG-VYHDWCEPFSTYP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 487 --ig-~~~~wce~f~typ-rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
+- ...|+.+ ..+| .+||+|.+.+++.++. +.+.+|-|+-|+|+|||.+++.|
T Consensus 314 ~~v~~~~~d~~~--~~~~~~~fD~I~s~~~l~h~~---------d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 314 CSVEFEVADCTK--KTYPDNSFDVIYSRDTILHIQ---------DKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred CceEEEEcCccc--CCCCCCCEEEEEECCcccccC---------CHHHHHHHHHHHcCCCeEEEEEE
Confidence 11 1233332 1244 6899999988887664 34578999999999999999874
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.69 E-value=1.6e-16 Score=160.15 Aligned_cols=115 Identities=26% Similarity=0.287 Sum_probs=98.8
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCC-----eEEEEcccccCC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIP-----AFVAMLGTRRLP 259 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~-----~~~~~~d~~~LP 259 (595)
.+.+.+.+.+....| .+|||+|||||.++..+++... ...++++|+|++|++.|+++..+ +.++++|++.||
T Consensus 38 ~Wr~~~i~~~~~~~g--~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP 114 (238)
T COG2226 38 LWRRALISLLGIKPG--DKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP 114 (238)
T ss_pred HHHHHHHHhhCCCCC--CEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC
Confidence 344555565555444 4999999999999999998843 56899999999999999998543 789999999999
Q ss_pred CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 260 FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 260 fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
|+|++||+|.+++.|.++. +.+.+|+|+.|||||||++++.+-
T Consensus 115 f~D~sFD~vt~~fglrnv~-d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 115 FPDNSFDAVTISFGLRNVT-DIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred CCCCccCEEEeeehhhcCC-CHHHHHHHHHHhhcCCeEEEEEEc
Confidence 9999999999999997776 899999999999999999988763
No 5
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.64 E-value=8.2e-16 Score=130.48 Aligned_cols=93 Identities=31% Similarity=0.449 Sum_probs=80.4
Q ss_pred EEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC--CeEEEEcccccCCCCCCceeEEEEcCCCcccccCHH
Q 007645 205 LDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNA 282 (595)
Q Consensus 205 LDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~--~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~~ 282 (595)
||+|||+|.++..|+++ ...+++++|+++++++.++++.. ...+...+..++|+++++||+|++..+++|+ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-SHHH
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-cCHH
Confidence 89999999999999998 34588999999999999999854 3558889999999999999999999999887 5889
Q ss_pred HHHHHHHhhcCCCcEEEE
Q 007645 283 TYLIEVDRLLRPGGYLVI 300 (595)
Q Consensus 283 ~~L~Ei~RvLRPGG~lvl 300 (595)
.+++|+.|+|||||++++
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.64 E-value=9.4e-16 Score=154.86 Aligned_cols=112 Identities=29% Similarity=0.385 Sum_probs=83.1
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C-CCeEEEEcccccCCCCC
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G-IPAFVAMLGTRRLPFPA 262 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g-~~~~~~~~d~~~LPfpd 262 (595)
+.+.+.+....+. +|||+|||||.++..++++......++++|+|++|++.|+++ + .++.++++|++++|+++
T Consensus 37 ~~~~~~~~~~~g~--~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d 114 (233)
T PF01209_consen 37 RKLIKLLGLRPGD--RVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPD 114 (233)
T ss_dssp SHHHHHHT--S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-T
T ss_pred HHHHhccCCCCCC--EEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC
Confidence 3444444444444 999999999999999988743445899999999999999876 2 36899999999999999
Q ss_pred CceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 263 FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
++||+|+|++.+++++ |...+|+|+.|+|||||++++.+
T Consensus 115 ~sfD~v~~~fglrn~~-d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 115 NSFDAVTCSFGLRNFP-DRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp T-EEEEEEES-GGG-S-SHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CceeEEEHHhhHHhhC-CHHHHHHHHHHHcCCCeEEEEee
Confidence 9999999999997776 88999999999999999999876
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.61 E-value=1.3e-14 Score=148.85 Aligned_cols=110 Identities=19% Similarity=0.157 Sum_probs=91.2
Q ss_pred HhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC--------CCeEEEEcccccCCCCC
Q 007645 191 KQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG--------IPAFVAMLGTRRLPFPA 262 (595)
Q Consensus 191 ~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg--------~~~~~~~~d~~~LPfpd 262 (595)
.+.+....+ .+|||+|||+|.++..|+++......++++|+|++|++.|+++. .++.+.+++++.+|+++
T Consensus 66 ~~~~~~~~~--~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~ 143 (261)
T PLN02233 66 VSWSGAKMG--DRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDD 143 (261)
T ss_pred HHHhCCCCC--CEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCC
Confidence 344444443 48999999999999988876212247899999999999997652 25778899999999999
Q ss_pred CceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 263 FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++||+|+++.+++++. ++..+++|+.|+|||||++++.+.
T Consensus 144 ~sfD~V~~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 144 CYFDAITMGYGLRNVV-DRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred CCEeEEEEecccccCC-CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 9999999999997775 889999999999999999999864
No 8
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.60 E-value=3.7e-15 Score=145.68 Aligned_cols=213 Identities=17% Similarity=0.189 Sum_probs=160.2
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeE
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDI 267 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDl 267 (595)
..+...++... .++|.|+|||+|..+..|+++ .....++|+|.|++|++.|+++.+++.|..+|+.... ++..+|+
T Consensus 20 ~dLla~Vp~~~--~~~v~DLGCGpGnsTelL~~R-wP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dl 95 (257)
T COG4106 20 RDLLARVPLER--PRRVVDLGCGPGNSTELLARR-WPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDL 95 (257)
T ss_pred HHHHhhCCccc--cceeeecCCCCCHHHHHHHHh-CCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccch
Confidence 34556666654 458999999999999999998 5667899999999999999999999999999988775 5678999
Q ss_pred EEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEeecceeEeeccCCc-cc
Q 007645 268 VHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGE-SC 346 (595)
Q Consensus 268 V~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~~~~~~iw~K~~~~-~c 346 (595)
++++.+| ||.++...+|..+...|.|||.+.+..|.. + .+.....|.+.+++..|......... .++++.. .-
T Consensus 96 lfaNAvl-qWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN-~--depsH~~mr~~A~~~p~~~~l~~~~~--~r~~v~s~a~ 169 (257)
T COG4106 96 LFANAVL-QWLPDHPELLPRLVSQLAPGGVLAVQMPDN-L--DEPSHRLMRETADEAPFAQELGGRGL--TRAPLPSPAA 169 (257)
T ss_pred hhhhhhh-hhccccHHHHHHHHHhhCCCceEEEECCCc-c--CchhHHHHHHHHhcCchhhhhCcccc--ccCCCCCHHH
Confidence 9999999 888788899999999999999999998721 2 22335568888988888776554332 4666654 33
Q ss_pred ccccCCCCCCCCCCCCCCCCcccccccccccCCccccccccCCCCCCCCcccCCCCccccccccChhhhhhhhhhHHHHH
Q 007645 347 LSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQRLTKAPSRALVMKNGYDVFEADSRRWRRRV 426 (595)
Q Consensus 347 ~~~~~~~~~p~C~~~~~~~~~wy~~l~~c~~~~~~~~~~~~~~~~~~wp~rl~~~p~~~~~~~~~~~~f~~d~~~w~~~v 426 (595)
|.. --.+--|. .|.+.+.||++|..--. .-+++.+..+.||=++| |.+.|+...
T Consensus 170 Yy~--lLa~~~~r-vDiW~T~Y~h~l~~a~a----IvdWvkgTgLrP~L~~L-------------------~e~~~~~FL 223 (257)
T COG4106 170 YYE--LLAPLACR-VDIWHTTYYHQLPGADA----IVDWVKGTGLRPYLDRL-------------------DEEERQRFL 223 (257)
T ss_pred HHH--HhCcccce-eeeeeeeccccCCCccc----hhhheeccccceecccc-------------------CHHHHHHHH
Confidence 332 11122454 57899999998743221 11366677777777776 347788889
Q ss_pred HHHHHHhhhc
Q 007645 427 AYYKNTLNVK 436 (595)
Q Consensus 427 ~~y~~~l~~~ 436 (595)
+.|...|+..
T Consensus 224 ~~Y~~~l~~a 233 (257)
T COG4106 224 DRYLALLAEA 233 (257)
T ss_pred HHHHHHHHHh
Confidence 9999877743
No 9
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.54 E-value=9e-14 Score=142.81 Aligned_cols=122 Identities=16% Similarity=0.230 Sum_probs=99.5
Q ss_pred cccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC---CeEEEEcc
Q 007645 178 MFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI---PAFVAMLG 254 (595)
Q Consensus 178 ~F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~---~~~~~~~d 254 (595)
.+..+.....+.+.+.+....+. +|||||||+|..+..|++.. ...++++|+++.+++.|+++.. .+.+...|
T Consensus 32 ~~~~gg~~~~~~~l~~l~l~~~~--~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D 107 (263)
T PTZ00098 32 YISSGGIEATTKILSDIELNENS--KVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEAND 107 (263)
T ss_pred CCCCCchHHHHHHHHhCCCCCCC--EEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECC
Confidence 33444445566677777666554 89999999999999887652 3478999999999999998743 47788888
Q ss_pred cccCCCCCCceeEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 255 TRRLPFPAFSFDIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 255 ~~~LPfpd~sFDlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+...|+++++||+|++..++.|+. ++...+++++.++|||||+|+++++
T Consensus 108 ~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 108 ILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred cccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 888899999999999998888876 3678999999999999999999875
No 10
>PLN02244 tocopherol O-methyltransferase
Probab=99.54 E-value=1.2e-13 Score=146.97 Aligned_cols=117 Identities=16% Similarity=0.231 Sum_probs=95.9
Q ss_pred HHHHHHHHhhcccc---CCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcc
Q 007645 184 DKYIDKLKQYIPIT---GGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLG 254 (595)
Q Consensus 184 ~~yi~~L~~~l~~~---~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d 254 (595)
...++.+.+.+... .....+|||||||+|.++..|+++. ...++++|+++.+++.|+++ +. ++.+.++|
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D 176 (340)
T PLN02244 99 IRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVAD 176 (340)
T ss_pred HHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcC
Confidence 34455566655441 1234589999999999999999862 34788999999999988764 33 47888999
Q ss_pred cccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 255 TRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 255 ~~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+..+|+++++||+|+|..+++|+. +...++.++.|+|||||.|++++.
T Consensus 177 ~~~~~~~~~~FD~V~s~~~~~h~~-d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 177 ALNQPFEDGQFDLVWSMESGEHMP-DKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred cccCCCCCCCccEEEECCchhccC-CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 999999999999999999998986 788999999999999999999864
No 11
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.54 E-value=1e-13 Score=146.28 Aligned_cols=129 Identities=14% Similarity=0.127 Sum_probs=104.0
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC------CCeEEEEcccccCCCCCCceeEEEEcCCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG------IPAFVAMLGTRRLPFPAFSFDIVHCSRCL 274 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg------~~~~~~~~d~~~LPfpd~sFDlV~~s~vL 274 (595)
..+|||||||+|.++..|++.+. .++++|.++.+++.|+++. ..+.+.+.+++.+++++++||+|+|..++
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 34899999999999999987653 7889999999999998652 25678888888899888999999999999
Q ss_pred cccccCHHHHHHHHHhhcCCCcEEEEEcCCCCC----------------CCC-------chhHHHHHHHHHHcCcEEEEe
Q 007645 275 IPFTAYNATYLIEVDRLLRPGGYLVISGPPVQW----------------PKQ-------DKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 275 ~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~----------------~~~-------~~~w~~l~~la~~~~w~~v~~ 331 (595)
+|+. ++..+|.++.++|||||.+++++++... ... ...-+++.+++++.+++++..
T Consensus 209 eHv~-d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 209 EHVA-NPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred HhcC-CHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 9987 8899999999999999999999764321 000 011345888888888888766
Q ss_pred ec
Q 007645 332 DG 333 (595)
Q Consensus 332 ~~ 333 (595)
.+
T Consensus 288 ~G 289 (322)
T PLN02396 288 AG 289 (322)
T ss_pred ee
Confidence 44
No 12
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.53 E-value=9.6e-14 Score=140.89 Aligned_cols=111 Identities=20% Similarity=0.301 Sum_probs=94.3
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCcee
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFD 266 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFD 266 (595)
.+.+.+.++... ..+|||+|||+|.++..|++.+ ..+.++|+|+.+++.|+++.....+.+.|.+.+|+++++||
T Consensus 31 a~~l~~~l~~~~--~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD 105 (251)
T PRK10258 31 ADALLAMLPQRK--FTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFD 105 (251)
T ss_pred HHHHHHhcCccC--CCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEE
Confidence 345556665433 3489999999999999998765 37889999999999999987666778889999999999999
Q ss_pred EEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 267 IVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 267 lV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+|+++.++ ||..++..++.++.|+|||||.++++++
T Consensus 106 ~V~s~~~l-~~~~d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 106 LAWSNLAV-QWCGNLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred EEEECchh-hhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99999988 6666899999999999999999999875
No 13
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.51 E-value=1.5e-14 Score=144.30 Aligned_cols=102 Identities=23% Similarity=0.325 Sum_probs=90.0
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCCceeEEEEcCCCccc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 277 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~ 277 (595)
.+|||||||.|.++..|++.| ..|+++|.++.+++.|+.+ ++.+.+.+..++++-...++||+|+|..+++|+
T Consensus 61 ~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 61 LRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 389999999999999999998 4889999999999998754 666677777777777666899999999999999
Q ss_pred ccCHHHHHHHHHhhcCCCcEEEEEcCCCCC
Q 007645 278 TAYNATYLIEVDRLLRPGGYLVISGPPVQW 307 (595)
Q Consensus 278 ~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~ 307 (595)
+ ++..++..+.+++||||.+++++++.++
T Consensus 138 ~-dp~~~~~~c~~lvkP~G~lf~STinrt~ 166 (243)
T COG2227 138 P-DPESFLRACAKLVKPGGILFLSTINRTL 166 (243)
T ss_pred C-CHHHHHHHHHHHcCCCcEEEEeccccCH
Confidence 7 8999999999999999999999986443
No 14
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.51 E-value=1.4e-13 Score=128.40 Aligned_cols=121 Identities=28% Similarity=0.516 Sum_probs=94.5
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY 280 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d 280 (595)
..+|||+|||+|.++..|++.+. +++++|+++.+++. ........+....+.++++||+|+|+.+|+|.. +
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~-d 93 (161)
T PF13489_consen 23 GKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLP-D 93 (161)
T ss_dssp TSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSS-H
T ss_pred CCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHHHhhcc-c
Confidence 44999999999999999988865 78899999999888 233333333345556789999999999998887 7
Q ss_pred HHHHHHHHHhhcCCCcEEEEEcCCCC---------CCCCch--------hHHHHHHHHHHcCcEEEE
Q 007645 281 NATYLIEVDRLLRPGGYLVISGPPVQ---------WPKQDK--------EWADLQAVARALCYELIA 330 (595)
Q Consensus 281 ~~~~L~Ei~RvLRPGG~lvls~p~~~---------~~~~~~--------~w~~l~~la~~~~w~~v~ 330 (595)
+..+|.++.++|||||+++++++... |..... .-..+.+++++.+|+++.
T Consensus 94 ~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 PEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 89999999999999999999998532 211111 134588889999988875
No 15
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.49 E-value=1.8e-13 Score=139.56 Aligned_cols=99 Identities=18% Similarity=0.112 Sum_probs=83.9
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCC-CCCCceeEEEEcCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLP-FPAFSFDIVHCSRC 273 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LP-fpd~sFDlV~~s~v 273 (595)
..+|||+|||+|.++..|++++. .++++|+|+.+++.|+++ +. ++.+.+.+...++ +++++||+|+|..+
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 45899999999999999999853 788899999999999876 32 4677787877663 66789999999999
Q ss_pred CcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 274 LIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 274 L~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++|+. ++..++.++.++|||||++++...
T Consensus 122 l~~~~-~~~~~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 122 LEWVA-DPKSVLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred HHhhC-CHHHHHHHHHHHcCCCeEEEEEEE
Confidence 97664 788999999999999999998654
No 16
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.48 E-value=1.7e-13 Score=139.74 Aligned_cols=110 Identities=21% Similarity=0.251 Sum_probs=90.5
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCcee
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFD 266 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFD 266 (595)
...+.+.+....+ .+|||+|||+|.++..|+++. ....++++|+|+.|++.|++++ +.+.+.|++.++ ++++||
T Consensus 18 ~~~ll~~l~~~~~--~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~~--~~~~~~d~~~~~-~~~~fD 91 (255)
T PRK14103 18 FYDLLARVGAERA--RRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARERG--VDARTGDVRDWK-PKPDTD 91 (255)
T ss_pred HHHHHHhCCCCCC--CEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhcC--CcEEEcChhhCC-CCCCce
Confidence 3455666655444 489999999999999998873 3457899999999999998875 456778887775 568999
Q ss_pred EEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 267 IVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 267 lV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+|+|+.+++|+. ++..++.++.++|||||++++..+
T Consensus 92 ~v~~~~~l~~~~-d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 92 VVVSNAALQWVP-EHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred EEEEehhhhhCC-CHHHHHHHHHHhCCCCcEEEEEcC
Confidence 999999996654 889999999999999999999865
No 17
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.47 E-value=1.2e-12 Score=130.85 Aligned_cols=116 Identities=22% Similarity=0.281 Sum_probs=94.1
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP 259 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP 259 (595)
.+.+.+.+.+....+. +|||+|||+|.++..+++.......++++|+++.+++.|+++ +. ++.+...|...++
T Consensus 32 ~~~~~~l~~l~~~~~~--~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 109 (231)
T TIGR02752 32 KWRKDTMKRMNVQAGT--SALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP 109 (231)
T ss_pred HHHHHHHHhcCCCCCC--EEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC
Confidence 3345566666655544 899999999999999987632345789999999999988865 22 4677888888888
Q ss_pred CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 260 FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 260 fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+++++||+|++..++++.. +...++.++.|+|+|||++++.++
T Consensus 110 ~~~~~fD~V~~~~~l~~~~-~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 110 FDDNSFDYVTIGFGLRNVP-DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCCCCccEEEEecccccCC-CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 8889999999999986654 788999999999999999998765
No 18
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.47 E-value=5.6e-13 Score=135.70 Aligned_cols=134 Identities=19% Similarity=0.231 Sum_probs=100.6
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCcee
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFD 266 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFD 266 (595)
...+.+.+....+ .+|||||||+|.++..++++. ....+.++|+++.+++.|+++..++.+...|+..+. ++++||
T Consensus 20 ~~~ll~~~~~~~~--~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD 95 (258)
T PRK01683 20 ARDLLARVPLENP--RYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALD 95 (258)
T ss_pred HHHHHhhCCCcCC--CEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCcc
Confidence 4455555555443 489999999999999998873 345889999999999999998777888888887664 456999
Q ss_pred EEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEE
Q 007645 267 IVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYEL 328 (595)
Q Consensus 267 lV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~ 328 (595)
+|+|+.++++. .+...++.++.++|||||.+++..+. .+. ...+..+.+++....|..
T Consensus 96 ~v~~~~~l~~~-~d~~~~l~~~~~~LkpgG~~~~~~~~-~~~--~~~~~~~~~~~~~~~w~~ 153 (258)
T PRK01683 96 LIFANASLQWL-PDHLELFPRLVSLLAPGGVLAVQMPD-NLD--EPSHVLMREVAENGPWEQ 153 (258)
T ss_pred EEEEccChhhC-CCHHHHHHHHHHhcCCCcEEEEECCC-CCC--CHHHHHHHHHHccCchHH
Confidence 99999999554 57889999999999999999998652 221 122334555554444543
No 19
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.46 E-value=2.1e-12 Score=137.06 Aligned_cols=136 Identities=15% Similarity=0.130 Sum_probs=105.9
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC--CCeEEEEcccccCCCCCCceeEEEEcCCCcccc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG--IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT 278 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg--~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~ 278 (595)
..+|||+|||+|.++..+++.. ....++++|.++.|++.|+++. .++.+...|.+.+++++++||+|+++.+++++.
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 3489999999999998887752 2347889999999999998863 346778888999999999999999999998876
Q ss_pred cCHHHHHHHHHhhcCCCcEEEEEcCC--CCCCCCc--------hhHHHHHHHHHHcCcEEEEeecceeEe
Q 007645 279 AYNATYLIEVDRLLRPGGYLVISGPP--VQWPKQD--------KEWADLQAVARALCYELIAVDGNTVIW 338 (595)
Q Consensus 279 ~d~~~~L~Ei~RvLRPGG~lvls~p~--~~~~~~~--------~~w~~l~~la~~~~w~~v~~~~~~~iw 338 (595)
+...+++++.|+|||||.+++.++. ..|..+. ..-+++.+++++.+|+.+..+...+.|
T Consensus 193 -d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~ 261 (340)
T PLN02490 193 -DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKW 261 (340)
T ss_pred -CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcChhh
Confidence 7789999999999999999987652 2222111 123567788899999988665433333
No 20
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.45 E-value=1.8e-12 Score=143.54 Aligned_cols=111 Identities=21% Similarity=0.330 Sum_probs=92.2
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC----CCeEEEEcccccCCCCCC
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG----IPAFVAMLGTRRLPFPAF 263 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg----~~~~~~~~d~~~LPfpd~ 263 (595)
+.+.+.+.... ..+|||||||+|.++..|++.. ...++++|+|+.+++.|+++. ..+.+.+.|...++++++
T Consensus 256 e~l~~~~~~~~--~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~ 331 (475)
T PLN02336 256 KEFVDKLDLKP--GQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDN 331 (475)
T ss_pred HHHHHhcCCCC--CCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCC
Confidence 33444444433 4489999999999999988762 347899999999999998762 246788889888899889
Q ss_pred ceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 264 SFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 264 sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+||+|+|..+++|+. ++..++.++.|+|||||.+++.++
T Consensus 332 ~fD~I~s~~~l~h~~-d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 332 SFDVIYSRDTILHIQ-DKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred CEEEEEECCcccccC-CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 999999999998886 789999999999999999999875
No 21
>PRK05785 hypothetical protein; Provisional
Probab=99.44 E-value=8e-13 Score=132.94 Aligned_cols=90 Identities=19% Similarity=0.157 Sum_probs=78.5
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY 280 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d 280 (595)
..+|||+|||+|.++..|++.. ...++++|+|++|++.|+++. .+.+++++.+|+++++||+|+|+++++|+. +
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~-d 125 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHASD-N 125 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecChhhccC-C
Confidence 3489999999999999998873 247899999999999998864 356788899999999999999999997665 8
Q ss_pred HHHHHHHHHhhcCCCc
Q 007645 281 NATYLIEVDRLLRPGG 296 (595)
Q Consensus 281 ~~~~L~Ei~RvLRPGG 296 (595)
+..+++|+.|+|||.+
T Consensus 126 ~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 126 IEKVIAEFTRVSRKQV 141 (226)
T ss_pred HHHHHHHHHHHhcCce
Confidence 8999999999999953
No 22
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.43 E-value=2.4e-12 Score=126.62 Aligned_cols=143 Identities=15% Similarity=0.258 Sum_probs=99.3
Q ss_pred HhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCCCCCce
Q 007645 191 KQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSF 265 (595)
Q Consensus 191 ~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPfpd~sF 265 (595)
.+.+....+ .+|||+|||+|.++..|++++. .++++|+|+.+++.++++ +. ++.+.+.|...++++ ++|
T Consensus 23 ~~~l~~~~~--~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~f 96 (197)
T PRK11207 23 LEAVKVVKP--GKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEY 96 (197)
T ss_pred HHhcccCCC--CcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCc
Confidence 344443333 3899999999999999999854 788899999999988754 33 366777787777764 679
Q ss_pred eEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEcC-C-CCCCC-Cc----hhHHHHHHHHHHcCcEEEEeecceeE
Q 007645 266 DIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISGP-P-VQWPK-QD----KEWADLQAVARALCYELIAVDGNTVI 337 (595)
Q Consensus 266 DlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p-~-~~~~~-~~----~~w~~l~~la~~~~w~~v~~~~~~~i 337 (595)
|+|+|+.+++++. ++...++.++.++|||||++++... . ..... .. ..-.++.+.++ +|+.+........
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~~~~~~ 174 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYNEDVGE 174 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEeeCCHHh
Confidence 9999999986654 2456899999999999999665431 1 00100 00 01234555555 7988877655555
Q ss_pred eecc
Q 007645 338 WKKP 341 (595)
Q Consensus 338 w~K~ 341 (595)
+.+.
T Consensus 175 ~~~~ 178 (197)
T PRK11207 175 LHRT 178 (197)
T ss_pred hccc
Confidence 5554
No 23
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.42 E-value=3.6e-12 Score=125.24 Aligned_cols=146 Identities=14% Similarity=0.226 Sum_probs=101.0
Q ss_pred HHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCCce
Q 007645 190 LKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSF 265 (595)
Q Consensus 190 L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~sF 265 (595)
+.+.+....+ .+|||+|||+|.++..|++++. .++++|+|+.+++.++++ ++++.....+....+++ ++|
T Consensus 22 l~~~~~~~~~--~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~f 95 (195)
T TIGR00477 22 VREAVKTVAP--CKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDY 95 (195)
T ss_pred HHHHhccCCC--CcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCC
Confidence 3344444333 3899999999999999998864 788999999999877643 55666666676666654 579
Q ss_pred eEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEcC--CCCCCC-----CchhHHHHHHHHHHcCcEEEEeecceeE
Q 007645 266 DIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISGP--PVQWPK-----QDKEWADLQAVARALCYELIAVDGNTVI 337 (595)
Q Consensus 266 DlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p--~~~~~~-----~~~~w~~l~~la~~~~w~~v~~~~~~~i 337 (595)
|+|+|+.+++++. ++...++.++.|+|||||++++..- ...+.. ......++.++++ .|+.+........
T Consensus 96 D~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e~~~~ 173 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYNEAVGE 173 (195)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEeeccccc
Confidence 9999999997765 3456899999999999999666431 000110 0112445666665 5888877655555
Q ss_pred eeccCC
Q 007645 338 WKKPVG 343 (595)
Q Consensus 338 w~K~~~ 343 (595)
|.+...
T Consensus 174 ~~~~~~ 179 (195)
T TIGR00477 174 LHATDA 179 (195)
T ss_pred cccccc
Confidence 655543
No 24
>PRK08317 hypothetical protein; Provisional
Probab=99.41 E-value=2.7e-12 Score=127.30 Aligned_cols=117 Identities=28% Similarity=0.394 Sum_probs=97.8
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLP 259 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LP 259 (595)
..+.+.+.+.+....+. +|||+|||+|.++..+++.......++++|+++.+++.|+++ ..++.+...+...++
T Consensus 5 ~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~ 82 (241)
T PRK08317 5 RRYRARTFELLAVQPGD--RVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP 82 (241)
T ss_pred HHHHHHHHHHcCCCCCC--EEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC
Confidence 45556666766665544 899999999999999988632345789999999999999886 345778888888888
Q ss_pred CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 260 FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 260 fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+++++||+|++..+++|+. ++..++.++.++|||||++++..+
T Consensus 83 ~~~~~~D~v~~~~~~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 83 FPDGSFDAVRSDRVLQHLE-DPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred CCCCCceEEEEechhhccC-CHHHHHHHHHHHhcCCcEEEEEec
Confidence 8889999999999998876 789999999999999999999876
No 25
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.40 E-value=5e-12 Score=133.67 Aligned_cols=138 Identities=22% Similarity=0.237 Sum_probs=102.4
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHH--c----CCCeEEEEcccccCCCC
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE--R----GIPAFVAMLGTRRLPFP 261 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~e--r----g~~~~~~~~d~~~LPfp 261 (595)
+.+...++...+ ++|||||||+|.++..|+..+.. .++++|.|+.++..++. + ..++.+..++++.+|+
T Consensus 112 ~~l~~~l~~l~g--~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~- 186 (322)
T PRK15068 112 DRVLPHLSPLKG--RTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA- 186 (322)
T ss_pred HHHHHhhCCCCC--CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-
Confidence 445555654444 48999999999999999998643 58899999988865332 2 2357888889999998
Q ss_pred CCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCC-------CCCC-c---------hhHHHHHHHHHHc
Q 007645 262 AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQ-------WPKQ-D---------KEWADLQAVARAL 324 (595)
Q Consensus 262 d~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~-------~~~~-~---------~~w~~l~~la~~~ 324 (595)
+++||+|+|..+++|.. ++..+|+++.++|+|||.+++.+.... +... . ..-..+.+++++.
T Consensus 187 ~~~FD~V~s~~vl~H~~-dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~a 265 (322)
T PRK15068 187 LKAFDTVFSMGVLYHRR-SPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERA 265 (322)
T ss_pred cCCcCEEEECChhhccC-CHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHc
Confidence 78999999999998875 889999999999999999998642110 0000 0 0123477788888
Q ss_pred CcEEEEe
Q 007645 325 CYELIAV 331 (595)
Q Consensus 325 ~w~~v~~ 331 (595)
||+.+..
T Consensus 266 GF~~i~~ 272 (322)
T PRK15068 266 GFKDVRI 272 (322)
T ss_pred CCceEEE
Confidence 8887754
No 26
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.40 E-value=2.3e-12 Score=129.05 Aligned_cols=102 Identities=20% Similarity=0.157 Sum_probs=88.8
Q ss_pred CcceEEEECCCCcHHHHHHhhcCC-----ceEEEEeecCcHHHHHHHHHcC----C----CeEEEEcccccCCCCCCcee
Q 007645 200 TLRTALDMGCGVASFGGSMLSENI-----LTLSFAPRDSHKAQIQFALERG----I----PAFVAMLGTRRLPFPAFSFD 266 (595)
Q Consensus 200 ~~r~VLDIGCGtG~~a~~La~~gv-----~~~~v~~vD~s~~~l~~A~erg----~----~~~~~~~d~~~LPfpd~sFD 266 (595)
...++||++||||..+..+++.-. ....++..|+++.|+..+++|. + .+.++.+|++.|||++.+||
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D 179 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFD 179 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcce
Confidence 346999999999999999988721 1257888999999999888763 2 37888999999999999999
Q ss_pred EEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 267 IVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 267 lV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+.+.++.+..++ ++++.|+|++|||||||+|.+..
T Consensus 180 ~yTiafGIRN~t-h~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 180 AYTIAFGIRNVT-HIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred eEEEecceecCC-CHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999999997 89999999999999999999875
No 27
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.37 E-value=3.3e-12 Score=112.71 Aligned_cols=99 Identities=26% Similarity=0.315 Sum_probs=79.3
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC------CCeEEEEccc-ccCCCCCCceeEEEEcC-C
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG------IPAFVAMLGT-RRLPFPAFSFDIVHCSR-C 273 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg------~~~~~~~~d~-~~LPfpd~sFDlV~~s~-v 273 (595)
.+|||+|||+|.++..++++. ....++++|+++.+++.|+++. .++.+.+.|. ..... .+.||+|++.. +
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGFT 80 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSGS
T ss_pred CEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCCc
Confidence 489999999999999999931 2347889999999999998773 4688899888 33333 35699999999 5
Q ss_pred Ccccc--cCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 274 LIPFT--AYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 274 L~h~~--~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
++++. ++...++.++.+.|+|||++++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 54443 345689999999999999999975
No 28
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.37 E-value=3.3e-12 Score=131.69 Aligned_cols=112 Identities=22% Similarity=0.331 Sum_probs=87.5
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCc--eEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCC
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENIL--TLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPF 260 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~--~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPf 260 (595)
.+...+.+.+.++. ...+|||+|||+|.++..|++.... ...+.++|+|+.+++.|+++..++.+.++++..+|+
T Consensus 71 ~~~i~~~l~~~l~~---~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~ 147 (272)
T PRK11088 71 RDAVANLLAERLDE---KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPF 147 (272)
T ss_pred HHHHHHHHHHhcCC---CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCC
Confidence 33333444444432 2347999999999999999876221 246899999999999999988888899999999999
Q ss_pred CCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCC
Q 007645 261 PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPV 305 (595)
Q Consensus 261 pd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~ 305 (595)
++++||+|++..+. ..+.|+.|+|||||+|+++.|..
T Consensus 148 ~~~sfD~I~~~~~~--------~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 148 ADQSLDAIIRIYAP--------CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred cCCceeEEEEecCC--------CCHHHHHhhccCCCEEEEEeCCC
Confidence 99999999986531 23689999999999999998743
No 29
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.36 E-value=1.5e-11 Score=129.37 Aligned_cols=139 Identities=20% Similarity=0.186 Sum_probs=101.2
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHH--c----CCCeEEEEcccccCCCC
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE--R----GIPAFVAMLGTRRLPFP 261 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~e--r----g~~~~~~~~d~~~LPfp 261 (595)
+.+...+....+ ++|||||||+|.++..++..+.. .++++|.|+.++..+.. + ...+.+...+++.+|..
T Consensus 111 ~~~l~~l~~~~g--~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~ 186 (314)
T TIGR00452 111 DRVLPHLSPLKG--RTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL 186 (314)
T ss_pred HHHHHhcCCCCC--CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC
Confidence 445555544444 49999999999999999887653 67899999998865432 1 23456677788888764
Q ss_pred CCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCC-----c------------hhHHHHHHHHHHc
Q 007645 262 AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQ-----D------------KEWADLQAVARAL 324 (595)
Q Consensus 262 d~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~-----~------------~~w~~l~~la~~~ 324 (595)
.+||+|+|+.+++|+. ++..+|.++.|+|||||.|++.+........ . ..-..+...+++.
T Consensus 187 -~~FD~V~s~gvL~H~~-dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~a 264 (314)
T TIGR00452 187 -YAFDTVFSMGVLYHRK-SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKV 264 (314)
T ss_pred -CCcCEEEEcchhhccC-CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHC
Confidence 5899999999998886 8889999999999999999987532111000 0 0123477888899
Q ss_pred CcEEEEee
Q 007645 325 CYELIAVD 332 (595)
Q Consensus 325 ~w~~v~~~ 332 (595)
||+.+...
T Consensus 265 GF~~V~i~ 272 (314)
T TIGR00452 265 GFENFRIL 272 (314)
T ss_pred CCeEEEEE
Confidence 99887543
No 30
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.36 E-value=3.2e-12 Score=119.97 Aligned_cols=101 Identities=29% Similarity=0.414 Sum_probs=85.1
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC--CCCCceeEEEEcCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP--FPAFSFDIVHCSRC 273 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP--fpd~sFDlV~~s~v 273 (595)
..+|||+|||+|.++..|++.-.....++++|+++.+++.|+++ +. ++.+.+.|+.+++ ++ +.||+|++..+
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~ 82 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGV 82 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEEST
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcCc
Confidence 34899999999999999995322345799999999999999874 44 5899999988887 66 89999999999
Q ss_pred CcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 274 LIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 274 L~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+++.. ++..+++++.++|++||.+++..+
T Consensus 83 l~~~~-~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 83 LHHFP-DPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp GGGTS-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhcc-CHHHHHHHHHHHcCCCcEEEEEEC
Confidence 96654 778999999999999999999875
No 31
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.35 E-value=7.1e-12 Score=124.54 Aligned_cols=101 Identities=24% Similarity=0.305 Sum_probs=87.7
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC-CeEEEEcccccCCCCCCceeEEEEcCCCccccc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA 279 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~-~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~ 279 (595)
..+|||+|||+|.++..+++.+. ...++++|+++.+++.++++.. ++.+...|...+++++++||+|+++.+++|. .
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~-~ 112 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWC-D 112 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhc-c
Confidence 35899999999999999998853 3468999999999999988753 4677888888899889999999999999555 4
Q ss_pred CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 280 YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 280 d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++..++.++.++|+|||.++++++
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeC
Confidence 788999999999999999999875
No 32
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.34 E-value=1.4e-12 Score=114.11 Aligned_cols=93 Identities=28% Similarity=0.395 Sum_probs=75.7
Q ss_pred EEEECCCCcHHHHHHhhcC--CceEEEEeecCcHHHHHHHHHcC----CCeEEEEcccccCCCCCCceeEEEEcCC-Ccc
Q 007645 204 ALDMGCGVASFGGSMLSEN--ILTLSFAPRDSHKAQIQFALERG----IPAFVAMLGTRRLPFPAFSFDIVHCSRC-LIP 276 (595)
Q Consensus 204 VLDIGCGtG~~a~~La~~g--v~~~~v~~vD~s~~~l~~A~erg----~~~~~~~~d~~~LPfpd~sFDlV~~s~v-L~h 276 (595)
|||+|||+|..+..+++.. .....+.++|+++++++.++++. .++.+.+.|..++++.+++||+|+|+.. ++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999998873 11258999999999999998874 7899999999999988999999999655 877
Q ss_pred cc-cCHHHHHHHHHhhcCCCc
Q 007645 277 FT-AYNATYLIEVDRLLRPGG 296 (595)
Q Consensus 277 ~~-~d~~~~L~Ei~RvLRPGG 296 (595)
+. ++...++.++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 65 234689999999999998
No 33
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.32 E-value=2.8e-11 Score=124.35 Aligned_cols=102 Identities=21% Similarity=0.113 Sum_probs=84.4
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCCCCCceeEEEEcCCCc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPfpd~sFDlV~~s~vL~ 275 (595)
..+|||+|||+|..+..++..-.....++++|+++.+++.|+++ +. ++.+...+.+.+++++++||+|+++.+++
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~ 157 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVIN 157 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCccc
Confidence 34999999999988877665522234688999999999999875 33 56778888889999989999999999886
Q ss_pred ccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 276 PFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 276 h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++. +...++.++.|+|||||+|++++.
T Consensus 158 ~~~-d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 158 LSP-DKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred CCC-CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 654 778999999999999999999764
No 34
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.32 E-value=6.9e-12 Score=122.13 Aligned_cols=111 Identities=23% Similarity=0.288 Sum_probs=88.1
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc-----CCCeE-EEEcccccCC-CCCCceeEEEEcCCCc
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER-----GIPAF-VAMLGTRRLP-FPAFSFDIVHCSRCLI 275 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er-----g~~~~-~~~~d~~~LP-fpd~sFDlV~~s~vL~ 275 (595)
.||+||||||..-.++-.. ...+++.+|.++.|-++|.++ ...+. |++++.+++| ++++|+|.|+|..||.
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC 156 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC 156 (252)
T ss_pred ceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence 4899999999766555432 346899999999999887654 34455 8889999998 8999999999999996
Q ss_pred ccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHH
Q 007645 276 PFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQA 319 (595)
Q Consensus 276 h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~ 319 (595)
.. +++.+.|.|+.|+|||||++++.+. -..++..|..+-+
T Consensus 157 Sv-e~~~k~L~e~~rlLRpgG~iifiEH---va~~y~~~n~i~q 196 (252)
T KOG4300|consen 157 SV-EDPVKQLNEVRRLLRPGGRIIFIEH---VAGEYGFWNRILQ 196 (252)
T ss_pred cc-CCHHHHHHHHHHhcCCCcEEEEEec---ccccchHHHHHHH
Confidence 65 4899999999999999999999875 2333445766444
No 35
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.32 E-value=1.3e-11 Score=124.59 Aligned_cols=101 Identities=17% Similarity=0.172 Sum_probs=83.8
Q ss_pred cceEEEECCCCcHHHHHHhhcC-CceEEEEeecCcHHHHHHHHHc------CCCeEEEEcccccCCCCCCceeEEEEcCC
Q 007645 201 LRTALDMGCGVASFGGSMLSEN-ILTLSFAPRDSHKAQIQFALER------GIPAFVAMLGTRRLPFPAFSFDIVHCSRC 273 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~g-v~~~~v~~vD~s~~~l~~A~er------g~~~~~~~~d~~~LPfpd~sFDlV~~s~v 273 (595)
..+|||+|||+|.++..++++. .....++++|+|+.|++.|+++ ..++.+...|...++++ .+|+|+++.+
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~ 131 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNFT 131 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeecc
Confidence 3489999999999999998762 2356899999999999999876 23568888888888875 4899999999
Q ss_pred Ccccc-cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 274 LIPFT-AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 274 L~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++|+. ++...++.++.|+|+|||.|+++++
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 97765 2346899999999999999999875
No 36
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.31 E-value=1.4e-11 Score=125.40 Aligned_cols=101 Identities=20% Similarity=0.182 Sum_probs=82.6
Q ss_pred cceEEEECCCCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCCCCceeEEEEcCC
Q 007645 201 LRTALDMGCGVASFGGSMLSE-NILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRC 273 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfpd~sFDlV~~s~v 273 (595)
..+|||+|||+|..+..+++. ......++++|+|+.|++.|+++ +. ++.+.+.++..+|++ .+|+|+++.+
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~ 134 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFT 134 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhhH
Confidence 348999999999999888763 22346899999999999999876 22 577888888888765 4899999999
Q ss_pred Cccccc-CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 274 LIPFTA-YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 274 L~h~~~-d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++++.. +...++.++.++|||||.|++++.
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 977652 235899999999999999999874
No 37
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.31 E-value=1.1e-11 Score=128.17 Aligned_cols=121 Identities=23% Similarity=0.395 Sum_probs=87.9
Q ss_pred CCCcccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--e
Q 007645 175 GGTMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--A 248 (595)
Q Consensus 175 ~g~~F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~ 248 (595)
...........-++.+.+.+...+|. +|||||||.|.++.+++++ .++.++++.+|++|.+.|+++ |+. +
T Consensus 39 ~~~~Le~AQ~~k~~~~~~~~~l~~G~--~vLDiGcGwG~~~~~~a~~--~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v 114 (273)
T PF02353_consen 39 GDDTLEEAQERKLDLLCEKLGLKPGD--RVLDIGCGWGGLAIYAAER--YGCHVTGITLSEEQAEYARERIREAGLEDRV 114 (273)
T ss_dssp TT--HHHHHHHHHHHHHTTTT--TT---EEEEES-TTSHHHHHHHHH--H--EEEEEES-HHHHHHHHHHHHCSTSSSTE
T ss_pred chhhHHHHHHHHHHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHH--cCcEEEEEECCHHHHHHHHHHHHhcCCCCce
Confidence 33334344444567788888888776 9999999999999999998 134788889999999998765 543 6
Q ss_pred EEEEcccccCCCCCCceeEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 249 FVAMLGTRRLPFPAFSFDIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 249 ~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.+...|..+++. +||.|++..+++|+. ++...+++++.++|||||.+++..
T Consensus 115 ~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 115 EVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp EEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred EEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 777777776653 899999999999996 466899999999999999999854
No 38
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.30 E-value=2.9e-11 Score=125.72 Aligned_cols=127 Identities=15% Similarity=0.242 Sum_probs=92.8
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCCceeEEEEcCCCcccc
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT 278 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~ 278 (595)
+|||+|||+|.++.+|++++. .++++|+|+.+++.++++ ++++.+...|....++ +++||+|+++.++++..
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~ 198 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLN 198 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCC
Confidence 899999999999999998864 788999999999887654 6667777777766555 67899999999997764
Q ss_pred -cCHHHHHHHHHhhcCCCcEEEEEcCCC--CCC--CC---chhHHHHHHHHHHcCcEEEEeecce
Q 007645 279 -AYNATYLIEVDRLLRPGGYLVISGPPV--QWP--KQ---DKEWADLQAVARALCYELIAVDGNT 335 (595)
Q Consensus 279 -~d~~~~L~Ei~RvLRPGG~lvls~p~~--~~~--~~---~~~w~~l~~la~~~~w~~v~~~~~~ 335 (595)
++...++.++.++|+|||++++..... ... .. ...-.++.+..+ +|+++......
T Consensus 199 ~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~--~~~i~~~~e~~ 261 (287)
T PRK12335 199 RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQ--DWEIVKYNENV 261 (287)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhC--CCEEEEEeccc
Confidence 345689999999999999977754211 000 00 011334666665 48888664433
No 39
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.29 E-value=1.6e-11 Score=121.74 Aligned_cols=99 Identities=15% Similarity=0.076 Sum_probs=82.3
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccc-c
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT-A 279 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~-~ 279 (595)
..+|||+|||+|.++..|++.. ....++++|+|+.+++.|+++...+.+.++++.. |+++++||+|+|..+++|+. +
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~ 121 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPD 121 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCCHH
Confidence 3489999999999999998762 2357999999999999999876667777888777 88999999999999999986 2
Q ss_pred CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 280 YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 280 d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+...++.++.|++ ++++++.+.
T Consensus 122 ~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 122 NLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred HHHHHHHHHHhhc--CcEEEEEEe
Confidence 3468899999998 567877653
No 40
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.29 E-value=3.3e-11 Score=120.00 Aligned_cols=126 Identities=17% Similarity=0.242 Sum_probs=94.7
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
+|||||||+|.++..+++.. ....++++|+|+.+++.|+++ +. .+.+...|....|++ ++||+|++..+++|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 79999999999999998763 234788999999999998875 23 357777777666665 58999999999988
Q ss_pred cccCHHHHHHHHHhhcCCCcEEEEEcCCCC-CCCCc--------hhHHHHHHHHHHcCcEEEEe
Q 007645 277 FTAYNATYLIEVDRLLRPGGYLVISGPPVQ-WPKQD--------KEWADLQAVARALCYELIAV 331 (595)
Q Consensus 277 ~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~-~~~~~--------~~w~~l~~la~~~~w~~v~~ 331 (595)
+. +...++.++.++|||||++++.++... +.... ..-..+.+++++.+++.+..
T Consensus 80 ~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 80 IK-DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred CC-CHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEe
Confidence 75 788999999999999999999875221 11110 01234556667777777644
No 41
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.28 E-value=1.3e-12 Score=113.59 Aligned_cols=92 Identities=30% Similarity=0.371 Sum_probs=59.7
Q ss_pred EEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C-CCeEEEEcccccCC--CCCCceeEEEEcCCCccc
Q 007645 205 LDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G-IPAFVAMLGTRRLP--FPAFSFDIVHCSRCLIPF 277 (595)
Q Consensus 205 LDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g-~~~~~~~~d~~~LP--fpd~sFDlV~~s~vL~h~ 277 (595)
||||||+|.++..+++.. ....++++|+|+.+++.|+++ . .............. ...++||+|++..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999999884 667999999999999777655 2 22233333322221 122699999999999888
Q ss_pred ccCHHHHHHHHHhhcCCCcEE
Q 007645 278 TAYNATYLIEVDRLLRPGGYL 298 (595)
Q Consensus 278 ~~d~~~~L~Ei~RvLRPGG~l 298 (595)
++...+++.+.++|||||.|
T Consensus 80 -~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred -hhHHHHHHHHHHHcCCCCCC
Confidence 68899999999999999986
No 42
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.27 E-value=7.3e-11 Score=115.57 Aligned_cols=117 Identities=21% Similarity=0.204 Sum_probs=92.7
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCCCCCceeEEEEcCCCc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPfpd~sFDlV~~s~vL~ 275 (595)
..+|||+|||+|.++..++.+. ....++++|.++.+++.|+++ +. ++.+...+...++. +++||+|+|...
T Consensus 46 g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 3489999999999999888752 345899999999999888764 44 37888888887776 779999998742
Q ss_pred ccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 276 PFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 276 h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
.+...++.++.++|||||++++.... ..-..+.++++..+|.+...
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~-------~~~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGR-------DPEEEIAELPKALGGKVEEV 167 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCC-------ChHHHHHHHHHhcCceEeee
Confidence 25678999999999999999998642 11235788889999987654
No 43
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.27 E-value=1.5e-11 Score=126.55 Aligned_cols=103 Identities=18% Similarity=0.222 Sum_probs=82.9
Q ss_pred cceEEEECCCCcH----HHHHHhhcCC----ceEEEEeecCcHHHHHHHHHcC---------------------------
Q 007645 201 LRTALDMGCGVAS----FGGSMLSENI----LTLSFAPRDSHKAQIQFALERG--------------------------- 245 (595)
Q Consensus 201 ~r~VLDIGCGtG~----~a~~La~~gv----~~~~v~~vD~s~~~l~~A~erg--------------------------- 245 (595)
..+|+|+|||+|. ++..|++... ....+.++|+|+.+++.|++.-
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 4589999999994 5666665422 2468999999999999998742
Q ss_pred -----CCeEEEEcccccCCCCCCceeEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 246 -----IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 246 -----~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
..+.|.+.|+...++++++||+|+|.++|+|+. ++...++.++.++|+|||+|++...
T Consensus 180 ~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 180 KPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred ChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 136777888888887789999999999998886 2345899999999999999999653
No 44
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.26 E-value=1.4e-10 Score=114.27 Aligned_cols=115 Identities=23% Similarity=0.231 Sum_probs=92.6
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC---CeEEEEcccccCCCCC
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI---PAFVAMLGTRRLPFPA 262 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~---~~~~~~~d~~~LPfpd 262 (595)
+.+.+.+.+.... ..+|||+|||+|.++..+++.......++++|+++.+++.++++.. ++.+...++..+++++
T Consensus 27 ~~~~~~~~~~~~~--~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (223)
T TIGR01934 27 WRRRAVKLIGVFK--GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFED 104 (223)
T ss_pred HHHHHHHHhccCC--CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCC
Confidence 3444555554433 3489999999999999998875432578999999999999988642 4677788888888888
Q ss_pred CceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 263 FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++||+|+++.++++.. +...+++++.++|+|||++++.+.
T Consensus 105 ~~~D~i~~~~~~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 105 NSFDAVTIAFGLRNVT-DIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CcEEEEEEeeeeCCcc-cHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8999999999987665 788999999999999999998764
No 45
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.26 E-value=1.7e-10 Score=114.88 Aligned_cols=115 Identities=23% Similarity=0.238 Sum_probs=91.7
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC------CCeEEEEcccccCC
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG------IPAFVAMLGTRRLP 259 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg------~~~~~~~~d~~~LP 259 (595)
+...+.+.+.... ..+|||+|||+|.++..++........+.++|+++.+++.++++. .++.+...+...++
T Consensus 39 ~~~~~~~~~~~~~--~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 116 (239)
T PRK00216 39 WRRKTIKWLGVRP--GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP 116 (239)
T ss_pred HHHHHHHHhCCCC--CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC
Confidence 3344444444333 348999999999999999887532358899999999999998762 34677888888888
Q ss_pred CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 260 FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 260 fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+++++||+|+++.+++++. +...++.++.++|+|||.+++.+.
T Consensus 117 ~~~~~~D~I~~~~~l~~~~-~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 117 FPDNSFDAVTIAFGLRNVP-DIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred CCCCCccEEEEecccccCC-CHHHHHHHHHHhccCCcEEEEEEe
Confidence 8788999999999997765 788999999999999999998764
No 46
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.25 E-value=4.1e-11 Score=123.43 Aligned_cols=119 Identities=19% Similarity=0.324 Sum_probs=95.4
Q ss_pred cccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--eEEE
Q 007645 178 MFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFVA 251 (595)
Q Consensus 178 ~F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~ 251 (595)
........-++.+.+.+.+.+|. +|||||||.|.++.+++++ ..+.++++++|++|.+.++++ |.+ +.+.
T Consensus 52 tL~eAQ~~k~~~~~~kl~L~~G~--~lLDiGCGWG~l~~~aA~~--y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~ 127 (283)
T COG2230 52 TLEEAQRAKLDLILEKLGLKPGM--TLLDIGCGWGGLAIYAAEE--YGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVR 127 (283)
T ss_pred ChHHHHHHHHHHHHHhcCCCCCC--EEEEeCCChhHHHHHHHHH--cCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEE
Confidence 34343444577888888888877 9999999999999999998 135788899999999988774 554 5555
Q ss_pred EcccccCCCCCCceeEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 252 MLGTRRLPFPAFSFDIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 252 ~~d~~~LPfpd~sFDlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
..|...+. +.||-|++..+++|+. ++...++..+.++|+|||.+++.+.
T Consensus 128 l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I 177 (283)
T COG2230 128 LQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSI 177 (283)
T ss_pred eccccccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEe
Confidence 55555443 4599999999999997 4578999999999999999998764
No 47
>PRK06922 hypothetical protein; Provisional
Probab=99.23 E-value=3.1e-11 Score=136.02 Aligned_cols=101 Identities=21% Similarity=0.170 Sum_probs=84.8
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCC--CCCCceeEEEEcCCCc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLP--FPAFSFDIVHCSRCLI 275 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LP--fpd~sFDlV~~s~vL~ 275 (595)
.+|||+|||+|.++..+++.. ....++++|+|+.|++.|+++ +.+..+.++|...+| +++++||+|+++.+++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH 498 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILH 498 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHH
Confidence 489999999999998888763 456899999999999998875 345677778888887 8889999999999987
Q ss_pred ccc------------cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 276 PFT------------AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 276 h~~------------~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++. ++...+|+++.|+|||||.+++.+.
T Consensus 499 ~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 499 ELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred hhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 653 2456899999999999999999864
No 48
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.21 E-value=7.9e-11 Score=127.37 Aligned_cols=112 Identities=21% Similarity=0.305 Sum_probs=88.6
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC--CCeEEEEcccccCCCCC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG--IPAFVAMLGTRRLPFPA 262 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg--~~~~~~~~d~~~LPfpd 262 (595)
..++.+.+.+...++. +|||||||+|.++..++++. ...++++|+|+++++.|+++. ..+.+...+...+ +
T Consensus 154 ~k~~~l~~~l~l~~g~--rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~ 226 (383)
T PRK11705 154 AKLDLICRKLQLKPGM--RVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---N 226 (383)
T ss_pred HHHHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---C
Confidence 3355566666665554 99999999999999998762 247899999999999999874 4456666666554 4
Q ss_pred CceeEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 263 FSFDIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++||.|++..+++|.. .+...++.++.++|||||++++.+.
T Consensus 227 ~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 227 GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 7899999999998875 3457899999999999999999764
No 49
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.20 E-value=1.1e-10 Score=115.31 Aligned_cols=121 Identities=21% Similarity=0.216 Sum_probs=90.5
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C-CCeEEEEccc-ccCC--CCCCceeEEEEcC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G-IPAFVAMLGT-RRLP--FPAFSFDIVHCSR 272 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g-~~~~~~~~d~-~~LP--fpd~sFDlV~~s~ 272 (595)
..+|||+|||+|.++..|++.. ....++++|+++.+++.|+++ + .++.+.+.++ ..++ +++++||+|++++
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 3489999999999999998763 345799999999999988764 3 3578888888 7776 7788999999987
Q ss_pred CCccccc--------CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEE
Q 007645 273 CLIPFTA--------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELI 329 (595)
Q Consensus 273 vL~h~~~--------d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v 329 (595)
.. +|.. ....++.++.++|||||+|+++.+. ...-..+.+.+++.+|...
T Consensus 120 ~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~------~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 120 PD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW------EGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC------HHHHHHHHHHHHhCccccc
Confidence 65 3321 1367899999999999999998741 1112235555665666443
No 50
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.18 E-value=1.9e-10 Score=111.99 Aligned_cols=105 Identities=25% Similarity=0.347 Sum_probs=83.3
Q ss_pred HHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccC-CCCCCceeE
Q 007645 189 KLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRL-PFPAFSFDI 267 (595)
Q Consensus 189 ~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~L-Pfpd~sFDl 267 (595)
.|.++++. ++ +|||+|||.|.+..+|.+. ..+...|+|++++.+..+.++|+++.-..++. .| .|++++||.
T Consensus 6 ~I~~~I~p--gs--rVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~-gL~~f~d~sFD~ 78 (193)
T PF07021_consen 6 IIAEWIEP--GS--RVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVARGVSVIQGDLDE-GLADFPDQSFDY 78 (193)
T ss_pred HHHHHcCC--CC--EEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHcCCCEEECCHHH-hHhhCCCCCccE
Confidence 45555543 33 9999999999999999885 23467788999999999999999855444333 34 499999999
Q ss_pred EEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCC
Q 007645 268 VHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPP 304 (595)
Q Consensus 268 V~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~ 304 (595)
|+++.+|.++. ++..+|.|+.|+ |...+++-|+
T Consensus 79 VIlsqtLQ~~~-~P~~vL~EmlRV---gr~~IVsFPN 111 (193)
T PF07021_consen 79 VILSQTLQAVR-RPDEVLEEMLRV---GRRAIVSFPN 111 (193)
T ss_pred EehHhHHHhHh-HHHHHHHHHHHh---cCeEEEEecC
Confidence 99999998886 789999999777 6677887773
No 51
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.18 E-value=5.1e-11 Score=120.10 Aligned_cols=98 Identities=22% Similarity=0.250 Sum_probs=80.0
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC-------C----eEEEEcccccCCCCCCceeEEE
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI-------P----AFVAMLGTRRLPFPAFSFDIVH 269 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~-------~----~~~~~~d~~~LPfpd~sFDlV~ 269 (595)
.++|||+|||+|.++..|++.|. +++++|.++.+++.|++..- + ..+.+.+.+.+. +.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceee
Confidence 46899999999999999999874 78999999999999988611 1 223333344332 4599999
Q ss_pred EcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCC
Q 007645 270 CSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPV 305 (595)
Q Consensus 270 ~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~ 305 (595)
|+.+++|+. |+..++..+.+.|||||.+++++-..
T Consensus 164 csevleHV~-dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 164 CSEVLEHVK-DPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred eHHHHHHHh-CHHHHHHHHHHHhCCCCceEeeehhh
Confidence 999999996 89999999999999999999998633
No 52
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.18 E-value=2.4e-10 Score=114.61 Aligned_cols=140 Identities=19% Similarity=0.243 Sum_probs=101.5
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCC-CC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLP-FP 261 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LP-fp 261 (595)
++.+...+.... ..+|||||||+|.++..+++.+ ..++++|+++.+++.|+++ +....+...+....+ ..
T Consensus 37 ~~~l~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (233)
T PRK05134 37 LNYIREHAGGLF--GKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEH 111 (233)
T ss_pred HHHHHHhccCCC--CCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhc
Confidence 444444443333 3489999999999999998875 3688899999999988865 445566666665554 34
Q ss_pred CCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCC-----------------Cch------hHHHHH
Q 007645 262 AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPK-----------------QDK------EWADLQ 318 (595)
Q Consensus 262 d~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~-----------------~~~------~w~~l~ 318 (595)
++.||+|+++.+++|.. +...+|.++.++|+|||.++++.+...... ... .-..+.
T Consensus 112 ~~~fD~Ii~~~~l~~~~-~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (233)
T PRK05134 112 PGQFDVVTCMEMLEHVP-DPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELA 190 (233)
T ss_pred CCCccEEEEhhHhhccC-CHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHH
Confidence 57899999999998776 788999999999999999999875321110 000 112467
Q ss_pred HHHHHcCcEEEEee
Q 007645 319 AVARALCYELIAVD 332 (595)
Q Consensus 319 ~la~~~~w~~v~~~ 332 (595)
+++++.+++.+...
T Consensus 191 ~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 191 AWLRQAGLEVQDIT 204 (233)
T ss_pred HHHHHCCCeEeeee
Confidence 78888888887553
No 53
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.18 E-value=3e-10 Score=113.12 Aligned_cols=144 Identities=19% Similarity=0.246 Sum_probs=101.3
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC----C--CeEEEEcccc
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG----I--PAFVAMLGTR 256 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg----~--~~~~~~~d~~ 256 (595)
...+.+.+.+.++....+..+|||+|||+|.++..+++.+. .++++|+++.+++.|+++. . ++.+.+.++.
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~ 114 (219)
T TIGR02021 38 RAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLL 114 (219)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 34445556666552122345899999999999999998743 7889999999999998762 2 5678888877
Q ss_pred cCCCCCCceeEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEcCCC----------CCCCCc-------hhHHHHH
Q 007645 257 RLPFPAFSFDIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISGPPV----------QWPKQD-------KEWADLQ 318 (595)
Q Consensus 257 ~LPfpd~sFDlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p~~----------~~~~~~-------~~w~~l~ 318 (595)
.++ ++||+|++..+++|+. ++...++.++.+++++++++.+..... .+.... ..-+.+.
T Consensus 115 ~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
T TIGR02021 115 SLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLE 191 (219)
T ss_pred hCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHH
Confidence 765 7899999999998875 345688999999999877766542210 011000 0134577
Q ss_pred HHHHHcCcEEEEee
Q 007645 319 AVARALCYELIAVD 332 (595)
Q Consensus 319 ~la~~~~w~~v~~~ 332 (595)
+++++.+|+.+..+
T Consensus 192 ~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 192 RALGELGWKIVREG 205 (219)
T ss_pred HHHHHcCceeeeee
Confidence 78888888887653
No 54
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.17 E-value=2.8e-10 Score=113.67 Aligned_cols=98 Identities=13% Similarity=0.036 Sum_probs=78.9
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHH-cC----------------CCeEEEEcccccCCCC-CC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE-RG----------------IPAFVAMLGTRRLPFP-AF 263 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~e-rg----------------~~~~~~~~d~~~LPfp-d~ 263 (595)
.+|||+|||.|..+..|+++|. +|+++|+|+.+++.+.+ ++ ..+.+.++|...++.. .+
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 3899999999999999999876 68888999999998533 33 3466778888777642 46
Q ss_pred ceeEEEEcCCCcccccC-HHHHHHHHHhhcCCCcEEEEEc
Q 007645 264 SFDIVHCSRCLIPFTAY-NATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 264 sFDlV~~s~vL~h~~~d-~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.||.|+...+++|++.+ ...++..+.++|||||++++.+
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 79999999888888743 3578999999999999866653
No 55
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.16 E-value=3.3e-10 Score=111.10 Aligned_cols=139 Identities=16% Similarity=0.286 Sum_probs=93.1
Q ss_pred HHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHH----HHcCCCeEEEEcccccCCCCCCce
Q 007645 190 LKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFA----LERGIPAFVAMLGTRRLPFPAFSF 265 (595)
Q Consensus 190 L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A----~erg~~~~~~~~d~~~LPfpd~sF 265 (595)
+.+.++...+ .++||+|||.|..+.+|+++|. +|+++|.|+..++.+ .+.++++...+.|.....++ +.|
T Consensus 22 v~~a~~~~~~--g~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~y 95 (192)
T PF03848_consen 22 VLEAVPLLKP--GKALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEY 95 (192)
T ss_dssp HHHHCTTS-S--SEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTE
T ss_pred HHHHHhhcCC--CcEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCc
Confidence 4444444333 3899999999999999999987 677889999887654 45688888889998877775 689
Q ss_pred eEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEcC--CCCCCCCc-h--hH--HHHHHHHHHcCcEEEEeeccee
Q 007645 266 DIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISGP--PVQWPKQD-K--EW--ADLQAVARALCYELIAVDGNTV 336 (595)
Q Consensus 266 DlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p--~~~~~~~~-~--~w--~~l~~la~~~~w~~v~~~~~~~ 336 (595)
|+|++..++.++. +....++..+...++|||++++.+. ...+.... . .+ .+|..... +|+++..+.++-
T Consensus 96 D~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y~E~~g 172 (192)
T PF03848_consen 96 DFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKYNEDVG 172 (192)
T ss_dssp EEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEEEEEEE
T ss_pred CEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEEEcccc
Confidence 9999988887766 3345789999999999999998542 11111111 0 12 12444444 799987655443
No 56
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.16 E-value=7.7e-10 Score=106.82 Aligned_cols=119 Identities=14% Similarity=0.156 Sum_probs=89.8
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCCceeEEEEcCCCccc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 277 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~ 277 (595)
.+|||+|||+|.++..+++.+. .+.++|+++.+++.++++ +..+.+...|....+ .++||+|+++..+++.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPL 95 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCC
Confidence 3799999999999999998854 788999999999988875 455667777765543 4589999999877655
Q ss_pred ccC--------------------HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 278 TAY--------------------NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 278 ~~d--------------------~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
... ...++.++.|+|+|||.+++..+... .-..+.+.+++.+|+....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~------~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN------GEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC------ChHHHHHHHHhCCCeEEEE
Confidence 321 24679999999999999999875211 1235667777778876644
No 57
>PRK06202 hypothetical protein; Provisional
Probab=99.15 E-value=3.8e-10 Score=113.39 Aligned_cols=100 Identities=19% Similarity=0.195 Sum_probs=77.8
Q ss_pred cceEEEECCCCcHHHHHHhhc---CCceEEEEeecCcHHHHHHHHHcC--CCeEEEEcccccCCCCCCceeEEEEcCCCc
Q 007645 201 LRTALDMGCGVASFGGSMLSE---NILTLSFAPRDSHKAQIQFALERG--IPAFVAMLGTRRLPFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~---gv~~~~v~~vD~s~~~l~~A~erg--~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~ 275 (595)
..+|||+|||+|.++..|++. ......++++|+++.+++.|+++. .++.+.+.+...+++++++||+|+|+.+++
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~lh 140 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFLH 140 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCeee
Confidence 458999999999998888753 122358999999999999998873 235566666677777788999999999998
Q ss_pred ccccC-HHHHHHHHHhhcCCCcEEEEEc
Q 007645 276 PFTAY-NATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 276 h~~~d-~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
|+.++ ...+++++.|++| |.+++.+
T Consensus 141 h~~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 141 HLDDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred cCChHHHHHHHHHHHHhcC--eeEEEec
Confidence 88632 3479999999998 5555544
No 58
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.14 E-value=4.2e-09 Score=117.91 Aligned_cols=294 Identities=12% Similarity=0.084 Sum_probs=156.8
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCCCCceeEEEEcCCCc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfpd~sFDlV~~s~vL~ 275 (595)
.+|||+|||+|.++..++... ....++++|+|+.+++.|+++ ++ .+.+...|... ++++++||+|+|+--..
T Consensus 140 ~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCC
Confidence 489999999999999888762 335788999999999999876 43 35666666432 23457899999954222
Q ss_pred cc--------------c-------cC----HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEE
Q 007645 276 PF--------------T-------AY----NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIA 330 (595)
Q Consensus 276 h~--------------~-------~d----~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~ 330 (595)
.. + .+ ...++.++.++|+|||.+++... . ..-+.+.+++++.+|+.+.
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig---~----~q~~~v~~~~~~~g~~~~~ 290 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG---F----KQEEAVTQIFLDHGYNIES 290 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC---C----chHHHHHHHHHhcCCCceE
Confidence 10 0 00 12467788999999999998642 1 1123567777777775443
Q ss_pred eecceeEeeccCCcccccccCCCCCCCCCCCCCCCCcccccccccccCCccccccccCCCCCCCCcccCCCCcccccccc
Q 007645 331 VDGNTVIWKKPVGESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQRLTKAPSRALVMKN 410 (595)
Q Consensus 331 ~~~~~~iw~K~~~~~c~~~~~~~~~p~C~~~~~~~~~wy~~l~~c~~~~~~~~~~~~~~~~~~wp~rl~~~p~~~~~~~~ 410 (595)
...|.. . ..|.....+.+-... |..-+.- ++..... . ..-.-||..+ +
T Consensus 291 ~~~D~~-------g---~~R~v~~~~~~~~rs------~~rr~g~--~~~~~q~-~--~~e~~~p~~~-----------i 338 (506)
T PRK01544 291 VYKDLQ-------G---HSRVILISPINLNRS------YARRIGK--SLSGVQQ-N--LLDNELPKYL-----------F 338 (506)
T ss_pred EEecCC-------C---CceEEEeccccCCcc------eeccCCC--CCCHHHH-H--HHHhhhhhhC-----------C
Confidence 321110 0 000000011111000 1000000 0000000 0 0011122222 1
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCC--C--eEEEEeccCCCCCchhHHhhccc
Q 007645 411 GYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSD--P--VWVMNVVPARKSSTLSVIYDRGL 486 (595)
Q Consensus 411 ~~~~f~~d~~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~--~--vwvmnv~p~~~~~~l~~i~eRGl 486 (595)
+.+ + +-...=..++|+|||.|.|.+.+... + +.-|=+-....-..+.-+.++||
T Consensus 339 ~~e-----------------k-----lf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l 396 (506)
T PRK01544 339 SKE-----------------K-----LVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI 396 (506)
T ss_pred CHH-----------------H-----hCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC
Confidence 110 0 11223588999999999999998433 2 22222221111134455667775
Q ss_pred hhhhcccCCCC----CCCC-CccchhhccCccc-cccCCCCCCCCCChhhhHHhhcccccCCcEEEEe-CChHHHHHHHH
Q 007645 487 IGVYHDWCEPF----STYP-RTYDLIHVSGIES-LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSR 559 (595)
Q Consensus 487 ig~~~~wce~f----~typ-rtyDl~H~~~~~s-~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r-d~~~~~~~~~~ 559 (595)
-.+. -.|..+ .-+| .+.|-|| =.|. +|....-.+.|=--...|-+|-|+|+|||.+-++ |..+..+.+.+
T Consensus 397 ~N~~-~~~~~~~~~~~~~~~~sv~~i~--i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~ 473 (506)
T PRK01544 397 TNFL-LFPNNLDLILNDLPNNSLDGIY--ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIE 473 (506)
T ss_pred CeEE-EEcCCHHHHHHhcCcccccEEE--EECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH
Confidence 2221 122222 2245 6777766 2232 2321111344544558999999999999988886 66666666555
Q ss_pred hH
Q 007645 560 IA 561 (595)
Q Consensus 560 ~~ 561 (595)
..
T Consensus 474 ~~ 475 (506)
T PRK01544 474 LI 475 (506)
T ss_pred HH
Confidence 43
No 59
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.14 E-value=1e-09 Score=98.01 Aligned_cols=109 Identities=16% Similarity=0.096 Sum_probs=80.9
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEccccc-CCC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRR-LPF 260 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~-LPf 260 (595)
...+.+.+....+. +|||+|||+|.++..++++.. ...++++|+++.+++.++++ +. ++.+...+... ++.
T Consensus 8 ~~~~~~~~~~~~~~--~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (124)
T TIGR02469 8 RALTLSKLRLRPGD--VLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED 84 (124)
T ss_pred HHHHHHHcCCCCCC--EEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh
Confidence 34455555544433 899999999999999998732 25789999999999988754 32 45666666543 333
Q ss_pred CCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 261 PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 261 pd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
...+||.|++..... ....++.++.+.|+|||+|++..
T Consensus 85 ~~~~~D~v~~~~~~~----~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 85 SLPEPDRVFIGGSGG----LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hcCCCCEEEECCcch----hHHHHHHHHHHHcCCCCEEEEEe
Confidence 346899999977552 34588999999999999999874
No 60
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.13 E-value=4.4e-10 Score=109.78 Aligned_cols=100 Identities=21% Similarity=0.230 Sum_probs=77.0
Q ss_pred CCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---CCeEEEEcccccCCCCCCceeEEEEcCCCc
Q 007645 199 GTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRRLPFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 199 g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~ 275 (595)
+..+++||+|||.|.++..|+.+ .-.+..+|+++.+++.|++|- .++.+.+.+.... .|+++||+||++.++.
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlY 117 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLY 117 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GG
T ss_pred cccceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhH
Confidence 34668999999999999999998 347889999999999999983 4588888887554 4789999999999997
Q ss_pred cccc--CHHHHHHHHHhhcCCCcEEEEEc
Q 007645 276 PFTA--YNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 276 h~~~--d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.+.+ +...++..+...|+|||.+++-.
T Consensus 118 YL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 118 YLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 6652 34578999999999999999975
No 61
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.12 E-value=1.1e-09 Score=114.18 Aligned_cols=114 Identities=15% Similarity=0.212 Sum_probs=81.2
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--eEEEEcccccCCCCCCceeEEEEcCCCc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~~d~~~LPfpd~sFDlV~~s~vL~ 275 (595)
.+|||+|||+|.++..++..+. ..+.++|+++.+++.|+++ +.. ..+...+ ..+..+++||+|+++....
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~--~~~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY--LEQPIEGKADVIVANILAE 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc--cccccCCCceEEEEecCHH
Confidence 4899999999999988887754 3788999999999999876 332 2223322 2334567999999976432
Q ss_pred ccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEE
Q 007645 276 PFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIA 330 (595)
Q Consensus 276 h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~ 330 (595)
....++.++.++|||||++++++.. ......+.+.+++. |+.+.
T Consensus 237 ----~l~~ll~~~~~~LkpgG~li~sgi~------~~~~~~v~~~~~~~-f~~~~ 280 (288)
T TIGR00406 237 ----VIKELYPQFSRLVKPGGWLILSGIL------ETQAQSVCDAYEQG-FTVVE 280 (288)
T ss_pred ----HHHHHHHHHHHHcCCCcEEEEEeCc------HhHHHHHHHHHHcc-Cceee
Confidence 3357899999999999999998751 11233455555554 66553
No 62
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.12 E-value=5.4e-10 Score=111.18 Aligned_cols=94 Identities=13% Similarity=0.040 Sum_probs=72.0
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCC--------CCCCceeEEEEcCC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLP--------FPAFSFDIVHCSRC 273 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LP--------fpd~sFDlV~~s~v 273 (595)
.+|||+|||+|.++..++++......+.++|+++ + ....++.+.++|+...+ +.+++||+|+|..+
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-----~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~ 126 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-----DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMA 126 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-----cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCC
Confidence 4899999999999999988743345788999987 2 12235778888877643 66789999999876
Q ss_pred CcccccCH-----------HHHHHHHHhhcCCCcEEEEEc
Q 007645 274 LIPFTAYN-----------ATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 274 L~h~~~d~-----------~~~L~Ei~RvLRPGG~lvls~ 302 (595)
. ++..++ ..+|.++.++|||||.|++..
T Consensus 127 ~-~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 127 P-NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred C-ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 5 333221 358999999999999999975
No 63
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.11 E-value=1e-09 Score=115.65 Aligned_cols=110 Identities=17% Similarity=0.217 Sum_probs=76.0
Q ss_pred HHHHHHHhhcccc-CCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC----------CCeEEEEc
Q 007645 185 KYIDKLKQYIPIT-GGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG----------IPAFVAML 253 (595)
Q Consensus 185 ~yi~~L~~~l~~~-~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg----------~~~~~~~~ 253 (595)
..++.+.+.+... .....+|||+|||+|.++..|++++. .++++|+|+.|++.|+++. ..+.+...
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~ 204 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAN 204 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEc
Confidence 3344455555432 11234899999999999999998854 7889999999999998762 23456666
Q ss_pred ccccCCCCCCceeEEEEcCCCcccccCH-HHHHHHHHhhcCCCcEEEEE
Q 007645 254 GTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 254 d~~~LPfpd~sFDlV~~s~vL~h~~~d~-~~~L~Ei~RvLRPGG~lvls 301 (595)
|...+ +++||+|+|..+++|++++. ..++..+.+ +.+||.++..
T Consensus 205 Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~ 249 (315)
T PLN02585 205 DLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISF 249 (315)
T ss_pred chhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEe
Confidence 65443 57899999999999987432 245555554 4566554433
No 64
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.10 E-value=1.7e-09 Score=105.35 Aligned_cols=94 Identities=19% Similarity=0.271 Sum_probs=74.7
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
.+|||+|||+|.++..++... ....++++|.++.+++.++++ +. ++.+..+++..++ .+++||+|+|.. +.
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~- 119 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LA- 119 (181)
T ss_pred CeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hh-
Confidence 489999999999999887653 235789999999988877643 44 4788888887764 357999999865 32
Q ss_pred cccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 277 FTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 277 ~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+...++..+.++|+|||.+++..
T Consensus 120 ---~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 120 ---SLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ---CHHHHHHHHHHhcCCCCEEEEEc
Confidence 45678899999999999999874
No 65
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.10 E-value=2.4e-10 Score=113.99 Aligned_cols=129 Identities=16% Similarity=0.243 Sum_probs=91.5
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCe------EEEEcccccCCCCCCceeEEEEcCCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPA------FVAMLGTRRLPFPAFSFDIVHCSRCL 274 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~------~~~~~d~~~LPfpd~sFDlV~~s~vL 274 (595)
.+.++|+|||+|..+..+++. . -.|.+.|+|++|++.|++.-... .....+...|--.++|.|+|+|..|+
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~-~--k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEH-Y--KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred cceEEEeccCCCcchHHHHHh-h--hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence 448999999999666666665 2 36788999999999998764322 11112223333338999999999999
Q ss_pred cccccCHHHHHHHHHhhcCCCc-EEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEeecceeEeeccCCc
Q 007645 275 IPFTAYNATYLIEVDRLLRPGG-YLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGE 344 (595)
Q Consensus 275 ~h~~~d~~~~L~Ei~RvLRPGG-~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~~~~~~iw~K~~~~ 344 (595)
||. |.+.+++++.|+||+.| .+++-. +.+....|.+...+..+.+|+ ..+.|+.+..+
T Consensus 111 -HWF-dle~fy~~~~rvLRk~Gg~iavW~----Y~dd~v~~pE~dsv~~r~~~~------~~p~~r~~~~n 169 (261)
T KOG3010|consen 111 -HWF-DLERFYKEAYRVLRKDGGLIAVWN----YNDDFVDWPEFDSVMLRLYDS------TLPYWRSPLRN 169 (261)
T ss_pred -Hhh-chHHHHHHHHHHcCCCCCEEEEEE----ccCCCcCCHHHHHHHHHHhhc------cCchhhhHHHH
Confidence 998 78999999999998866 666632 222223488888888888887 35566555544
No 66
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.09 E-value=6.1e-10 Score=109.64 Aligned_cols=133 Identities=17% Similarity=0.273 Sum_probs=99.4
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEccc-ccCCCCCCc
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGT-RRLPFPAFS 264 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~-~~LPfpd~s 264 (595)
..+.-.+++.+..+...-|||||||+|..+..|.+.|. ...++|+|+.|++.|.++-+...+...|+ +-+||..++
T Consensus 36 m~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGt 112 (270)
T KOG1541|consen 36 MAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGT 112 (270)
T ss_pred HHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCc
Confidence 34455566666655567899999999999999998874 67889999999999998766655555553 789999999
Q ss_pred eeEEEEcCCCccccc-------CHH----HHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCc
Q 007645 265 FDIVHCSRCLIPFTA-------YNA----TYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCY 326 (595)
Q Consensus 265 FDlV~~s~vL~h~~~-------d~~----~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w 326 (595)
||.|++..++ .|.- ++. .++..++.+|++|+..++.- +...+..-+.+...+.+.+|
T Consensus 113 FDg~ISISAv-QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf----Ypen~~q~d~i~~~a~~aGF 180 (270)
T KOG1541|consen 113 FDGVISISAV-QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF----YPENEAQIDMIMQQAMKAGF 180 (270)
T ss_pred cceEEEeeee-eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe----cccchHHHHHHHHHHHhhcc
Confidence 9999998777 5552 222 56777999999999999974 44444445555566655554
No 67
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.08 E-value=3.4e-09 Score=101.91 Aligned_cols=112 Identities=18% Similarity=0.262 Sum_probs=80.7
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC-eEEEEcccccCCCCC
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPA 262 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~-~~~~~~d~~~LPfpd 262 (595)
..|.+.+.... ..+|||+|||+|.++..++++.. ...++.+|+++.+++.++++ +.. +.+...|... +.++
T Consensus 21 ~lL~~~l~~~~--~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~ 96 (170)
T PF05175_consen 21 RLLLDNLPKHK--GGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPD 96 (170)
T ss_dssp HHHHHHHHHHT--TCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCT
T ss_pred HHHHHHHhhcc--CCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-cccc
Confidence 34444444433 33899999999999999998854 34688999999999998764 555 6777776543 2347
Q ss_pred CceeEEEEcCCCccccc----CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 263 FSFDIVHCSRCLIPFTA----YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~----d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++||+|+|+--++.-.. ....++.++.+.|+|||.+++...
T Consensus 97 ~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 97 GKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 89999999976633221 135789999999999999988754
No 68
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.08 E-value=1.1e-09 Score=108.46 Aligned_cols=109 Identities=17% Similarity=0.120 Sum_probs=81.3
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRL 258 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~L 258 (595)
.....+.+.+....+. +|||+|||+|..+..|++.-.....++++|+++++++.|+++ +. .+.+...|....
T Consensus 59 ~~~~~~~~~l~~~~~~--~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~ 136 (205)
T PRK13944 59 HMVAMMCELIEPRPGM--KILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG 136 (205)
T ss_pred HHHHHHHHhcCCCCCC--EEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC
Confidence 4455566666554444 899999999999988887622223788999999999988764 43 267777777654
Q ss_pred CCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 259 PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 259 Pfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
....++||+|++..++.+++ .++.++|+|||++++..
T Consensus 137 ~~~~~~fD~Ii~~~~~~~~~-------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 137 LEKHAPFDAIIVTAAASTIP-------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred CccCCCccEEEEccCcchhh-------HHHHHhcCcCcEEEEEE
Confidence 44567999999998875543 47889999999998864
No 69
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.07 E-value=2.8e-09 Score=113.72 Aligned_cols=141 Identities=16% Similarity=0.142 Sum_probs=96.7
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPA 262 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd 262 (595)
.+.+.+.++..... +|||+|||+|.++..++++.. ...++++|+++.+++.|+++ ++...+...|... ..+
T Consensus 185 t~lLl~~l~~~~~g--~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~--~~~ 259 (342)
T PRK09489 185 SQLLLSTLTPHTKG--KVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS--DIK 259 (342)
T ss_pred HHHHHHhccccCCC--eEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc--ccC
Confidence 34445555543322 799999999999999998743 34789999999999988753 5555666655433 235
Q ss_pred CceeEEEEcCCCcccc----cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEeecceeEe
Q 007645 263 FSFDIVHCSRCLIPFT----AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIW 338 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~----~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~~~~~~iw 338 (595)
+.||+|+|+..++... .....++.++.+.|||||.|+++.+. ...+. ..+++.+. ..+.+.+.....+|
T Consensus 260 ~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~---~l~y~--~~l~~~Fg--~~~~la~~~~f~v~ 332 (342)
T PRK09489 260 GRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA---FLPYP--DLLDETFG--SHEVLAQTGRFKVY 332 (342)
T ss_pred CCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC---CCChH--HHHHHHcC--CeEEEEeCCCEEEE
Confidence 7899999998885422 13468899999999999999998751 11121 12333443 34666666667666
Q ss_pred e
Q 007645 339 K 339 (595)
Q Consensus 339 ~ 339 (595)
+
T Consensus 333 ~ 333 (342)
T PRK09489 333 R 333 (342)
T ss_pred E
Confidence 4
No 70
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.07 E-value=3.2e-09 Score=103.91 Aligned_cols=88 Identities=25% Similarity=0.271 Sum_probs=70.7
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEccccc-C-CCCCCceeEEEEcCCCccccc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRR-L-PFPAFSFDIVHCSRCLIPFTA 279 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~-L-Pfpd~sFDlV~~s~vL~h~~~ 279 (595)
.+|||+|||+|.++..+++.. ...+.++|+++++++.|+++++ .+.+.++.. + ++++++||+|+|+.+++|..
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~~~--~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~- 89 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVARGV--NVIQGDLDEGLEAFPDKSFDYVILSQTLQATR- 89 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHcCC--eEEEEEhhhcccccCCCCcCEEEEhhHhHcCc-
Confidence 389999999999999987652 2356789999999999988764 455566544 4 47788999999999997775
Q ss_pred CHHHHHHHHHhhcCC
Q 007645 280 YNATYLIEVDRLLRP 294 (595)
Q Consensus 280 d~~~~L~Ei~RvLRP 294 (595)
++..+|+++.|++++
T Consensus 90 d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 90 NPEEILDEMLRVGRH 104 (194)
T ss_pred CHHHHHHHHHHhCCe
Confidence 788999999888764
No 71
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.06 E-value=1e-09 Score=107.73 Aligned_cols=100 Identities=23% Similarity=0.309 Sum_probs=79.5
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC---CCCCceeEEEEcCC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP---FPAFSFDIVHCSRC 273 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP---fpd~sFDlV~~s~v 273 (595)
.++||||||+|.++..++.+.. ...+.++|+++.+++.|+++ ++ ++.++..|+..++ +++++||.|++++.
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 3899999999999999998743 45889999999999888654 33 5788888876653 56679999998875
Q ss_pred CcccccCH--------HHHHHHHHhhcCCCcEEEEEcC
Q 007645 274 LIPFTAYN--------ATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 274 L~h~~~d~--------~~~L~Ei~RvLRPGG~lvls~p 303 (595)
. +|.... ..++.++.|+|||||.|++.+.
T Consensus 97 d-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 97 D-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred C-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 4 554221 4689999999999999999864
No 72
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.06 E-value=3.3e-09 Score=105.37 Aligned_cols=129 Identities=20% Similarity=0.232 Sum_probs=97.1
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCCC-CCceeEEEEcCCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFP-AFSFDIVHCSRCL 274 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPfp-d~sFDlV~~s~vL 274 (595)
..+|||+|||+|.++..+++.+. .++++|.++.+++.++++ +. ++.+...+...++.. .++||+|++..++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 45899999999999999887653 588899999999988764 34 467777777666544 3789999999999
Q ss_pred cccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCC----------------C-------chhHHHHHHHHHHcCcEEEEe
Q 007645 275 IPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPK----------------Q-------DKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 275 ~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~----------------~-------~~~w~~l~~la~~~~w~~v~~ 331 (595)
+|.. ++..++.++.++|+|||+++++++...... . ......+.+++++.+++++..
T Consensus 123 ~~~~-~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~ 201 (224)
T TIGR01983 123 EHVP-DPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDV 201 (224)
T ss_pred HhCC-CHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeee
Confidence 7765 888999999999999999998875321100 0 001234777888888888765
Q ss_pred ec
Q 007645 332 DG 333 (595)
Q Consensus 332 ~~ 333 (595)
++
T Consensus 202 ~~ 203 (224)
T TIGR01983 202 KG 203 (224)
T ss_pred ee
Confidence 43
No 73
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.05 E-value=2.1e-09 Score=107.76 Aligned_cols=96 Identities=15% Similarity=0.078 Sum_probs=76.9
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHH-HcCC----------------CeEEEEcccccCCCC-CC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFAL-ERGI----------------PAFVAMLGTRRLPFP-AF 263 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~-erg~----------------~~~~~~~d~~~LPfp-d~ 263 (595)
.+|||+|||.|..+..|+++|. +|+++|+|+.+++.+. ++++ .+.+.++|+..++.. .+
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 3899999999999999999876 7888999999999763 4443 356677787776533 25
Q ss_pred ceeEEEEcCCCcccccC-HHHHHHHHHhhcCCCcEEEE
Q 007645 264 SFDIVHCSRCLIPFTAY-NATYLIEVDRLLRPGGYLVI 300 (595)
Q Consensus 264 sFDlV~~s~vL~h~~~d-~~~~L~Ei~RvLRPGG~lvl 300 (595)
.||+|+-..+++|++.+ ...++..+.++|+|||++++
T Consensus 116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 116 DVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 89999999988888733 35899999999999997554
No 74
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.04 E-value=4.1e-09 Score=107.56 Aligned_cols=113 Identities=22% Similarity=0.282 Sum_probs=81.6
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
..+|||+|||+|.++..++..+.. .+.++|+++.+++.|+++ ++...+ .++..+.+||+|+|+...
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~~~------~~~~~~~~fD~Vvani~~-- 189 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVELNV------YLPQGDLKADVIVANILA-- 189 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCceE------EEccCCCCcCEEEEcCcH--
Confidence 458999999999999888877643 588999999999998876 221111 122222379999997533
Q ss_pred cccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 277 FTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 277 ~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
.....++.++.++|||||++++++... .....+.+.+++.+|+.+..
T Consensus 190 --~~~~~l~~~~~~~LkpgG~lilsgi~~------~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 190 --NPLLELAPDLARLLKPGGRLILSGILE------EQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred --HHHHHHHHHHHHhcCCCcEEEEEECcH------hhHHHHHHHHHHCCCEEEEE
Confidence 123578899999999999999987421 12345677788888987654
No 75
>PRK04266 fibrillarin; Provisional
Probab=99.04 E-value=5.9e-09 Score=105.12 Aligned_cols=134 Identities=14% Similarity=0.148 Sum_probs=89.5
Q ss_pred hhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc---CCCeEEEEccccc----CCCCCCc
Q 007645 192 QYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER---GIPAFVAMLGTRR----LPFPAFS 264 (595)
Q Consensus 192 ~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er---g~~~~~~~~d~~~----LPfpd~s 264 (595)
+.++...+. +|||+|||+|.++..|++... ...+.++|+++.|++.+.++ ..++.+...|... .+++ .+
T Consensus 66 ~~l~i~~g~--~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~ 141 (226)
T PRK04266 66 KNFPIKKGS--KVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EK 141 (226)
T ss_pred hhCCCCCCC--EEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-cc
Confidence 346666655 999999999999999988732 34788999999888755433 1356667777643 1223 56
Q ss_pred eeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCC--CCCCCCchh-HHHHHHHHHHcCcEEEEee
Q 007645 265 FDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPP--VQWPKQDKE-WADLQAVARALCYELIAVD 332 (595)
Q Consensus 265 FDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~--~~~~~~~~~-w~~l~~la~~~~w~~v~~~ 332 (595)
||+|++.... +.....++.++.|+|||||+++++.+. ..|...... .+...+.+++.+|+.+...
T Consensus 142 ~D~i~~d~~~---p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~ 209 (226)
T PRK04266 142 VDVIYQDVAQ---PNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVV 209 (226)
T ss_pred CCEEEECCCC---hhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 9999965321 112245689999999999999997541 233332222 3334577778899887553
No 76
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.03 E-value=8.1e-09 Score=100.42 Aligned_cols=127 Identities=12% Similarity=0.031 Sum_probs=91.1
Q ss_pred HHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCCCCC
Q 007645 189 KLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAF 263 (595)
Q Consensus 189 ~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPfpd~ 263 (595)
.+.+.+....+ .+|||+|||+|.++..++++. ....++++|+++.+++.|+++ +. ++.+...+.. .++ .+
T Consensus 22 ~~~~~l~~~~~--~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~ 96 (187)
T PRK08287 22 LALSKLELHRA--KHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PG 96 (187)
T ss_pred HHHHhcCCCCC--CEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-Cc
Confidence 34455544443 489999999999999998874 335789999999999988764 32 3566665543 233 36
Q ss_pred ceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEE
Q 007645 264 SFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIA 330 (595)
Q Consensus 264 sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~ 330 (595)
+||+|++..... ....++.++.++|+|||++++.... .....++.+++++.+|+.+.
T Consensus 97 ~~D~v~~~~~~~----~~~~~l~~~~~~Lk~gG~lv~~~~~------~~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 97 KADAIFIGGSGG----NLTAIIDWSLAHLHPGGRLVLTFIL------LENLHSALAHLEKCGVSELD 153 (187)
T ss_pred CCCEEEECCCcc----CHHHHHHHHHHhcCCCeEEEEEEec------HhhHHHHHHHHHHCCCCcce
Confidence 899999986542 3466889999999999999986421 12245677788888886543
No 77
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.03 E-value=1.8e-09 Score=111.81 Aligned_cols=137 Identities=23% Similarity=0.232 Sum_probs=97.2
Q ss_pred HHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHH---HHHc-CCCe--EEEEcccccCCCCC
Q 007645 189 KLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQF---ALER-GIPA--FVAMLGTRRLPFPA 262 (595)
Q Consensus 189 ~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~---A~er-g~~~--~~~~~d~~~LPfpd 262 (595)
.+...++...|+ +|||||||.|.++..|+.+|.. .+.|+|.+.-..-+ +++- +... ...-..++.+|. .
T Consensus 106 rl~p~l~~L~gk--~VLDIGC~nGY~~frM~~~GA~--~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~ 180 (315)
T PF08003_consen 106 RLLPHLPDLKGK--RVLDIGCNNGYYSFRMLGRGAK--SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-L 180 (315)
T ss_pred HHHhhhCCcCCC--EEEEecCCCcHHHHHHhhcCCC--EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-c
Confidence 455566544444 9999999999999999999764 67788887654332 2222 3332 233357888987 7
Q ss_pred CceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCC-------------CCCCCc----hhHHHHHHHHHHcC
Q 007645 263 FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPV-------------QWPKQD----KEWADLQAVARALC 325 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~-------------~~~~~~----~~w~~l~~la~~~~ 325 (595)
++||+|+|..||.|.. ++-..|.++...|+|||.+++.+--. +...++ ..-..|...+++.+
T Consensus 181 ~~FDtVF~MGVLYHrr-~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~g 259 (315)
T PF08003_consen 181 GAFDTVFSMGVLYHRR-SPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAG 259 (315)
T ss_pred CCcCEEEEeeehhccC-CHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcC
Confidence 8999999999999986 88999999999999999999754211 111111 01345888888888
Q ss_pred cEEEEe
Q 007645 326 YELIAV 331 (595)
Q Consensus 326 w~~v~~ 331 (595)
|+-+..
T Consensus 260 F~~v~~ 265 (315)
T PF08003_consen 260 FKDVRC 265 (315)
T ss_pred CceEEE
Confidence 877644
No 78
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.03 E-value=2.1e-10 Score=113.44 Aligned_cols=132 Identities=20% Similarity=0.250 Sum_probs=99.7
Q ss_pred CCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccC-C-CCCCceeEEEEcCCCcc
Q 007645 199 GTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRL-P-FPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 199 g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~L-P-fpd~sFDlV~~s~vL~h 276 (595)
+..+++||+|||||.++..|... +-.++++|+|++|++.|.++++--.+.+.++..+ + ..++.||+|++..||..
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~Y 200 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPY 200 (287)
T ss_pred CccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHh
Confidence 33679999999999999999876 3478899999999999999987555555554432 2 45678999999999955
Q ss_pred cccCHHHHHHHHHhhcCCCcEEEEEcC--CCCCCCCchh-------HHHHHHHHHHcCcEEEEeecc
Q 007645 277 FTAYNATYLIEVDRLLRPGGYLVISGP--PVQWPKQDKE-------WADLQAVARALCYELIAVDGN 334 (595)
Q Consensus 277 ~~~d~~~~L~Ei~RvLRPGG~lvls~p--~~~~~~~~~~-------w~~l~~la~~~~w~~v~~~~~ 334 (595)
+- +.+.++.-+...|+|||.|.+|.- +..|...-.+ -.-+..+.+..+++++..+..
T Consensus 201 lG-~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 201 LG-ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred hc-chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecc
Confidence 54 788999999999999999999874 2222111111 112677888889999877554
No 79
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.01 E-value=7.1e-09 Score=103.27 Aligned_cols=93 Identities=25% Similarity=0.277 Sum_probs=71.7
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCCCCceeEEEEcCCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCL 274 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfpd~sFDlV~~s~vL 274 (595)
..+|||+|||+|.++..|++.+. .++++|+++.+++.|+++ +. .+.+...+ ++..+++||+|++..++
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~l 137 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDVL 137 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcchh
Confidence 34899999999999999998754 588999999999999876 22 35666665 44456889999999999
Q ss_pred cccc-cCHHHHHHHHHhhcCCCcEEE
Q 007645 275 IPFT-AYNATYLIEVDRLLRPGGYLV 299 (595)
Q Consensus 275 ~h~~-~d~~~~L~Ei~RvLRPGG~lv 299 (595)
+|+. ++...++.++.+++++++.+.
T Consensus 138 ~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 138 IHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred hcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 8876 234577888888775544433
No 80
>PRK14967 putative methyltransferase; Provisional
Probab=99.00 E-value=1.2e-08 Score=102.10 Aligned_cols=119 Identities=17% Similarity=0.141 Sum_probs=84.0
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCCceeEEEEcCCCccc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 277 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~ 277 (595)
.+|||+|||+|.++..++..+. ..++++|+++.+++.++++ +.++.+...|... .+++++||+|+++....+-
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCC
Confidence 4899999999999999988643 3788999999999987764 4556677766654 3456899999997543221
Q ss_pred cc--------------------CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEE
Q 007645 278 TA--------------------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELI 329 (595)
Q Consensus 278 ~~--------------------d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v 329 (595)
.. ....++.++.++|||||.+++...... ....+.+.+++.+|+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~------~~~~~~~~l~~~g~~~~ 180 (223)
T PRK14967 115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS------GVERTLTRLSEAGLDAE 180 (223)
T ss_pred CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc------CHHHHHHHHHHCCCCeE
Confidence 11 024578889999999999998754221 23345555666666543
No 81
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.00 E-value=3.6e-09 Score=105.47 Aligned_cols=110 Identities=12% Similarity=0.045 Sum_probs=83.0
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRL 258 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~L 258 (595)
......+.+.+....+. +|||||||+|.++..|++..-....++++|+++.+++.|+++ +. ++.+...|....
T Consensus 62 p~~~~~~~~~l~~~~g~--~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~ 139 (212)
T PRK13942 62 IHMVAIMCELLDLKEGM--KVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLG 139 (212)
T ss_pred HHHHHHHHHHcCCCCcC--EEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC
Confidence 44555566666655554 999999999999998887632234788999999999998875 33 477888887665
Q ss_pred CCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 259 PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 259 Pfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
..+.+.||+|++.....+. ...+.+.|||||.+++..
T Consensus 140 ~~~~~~fD~I~~~~~~~~~-------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 140 YEENAPYDRIYVTAAGPDI-------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCcCCCcCEEEECCCcccc-------hHHHHHhhCCCcEEEEEE
Confidence 5567899999998766443 245677899999999864
No 82
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=9.3e-09 Score=106.53 Aligned_cols=158 Identities=20% Similarity=0.238 Sum_probs=107.3
Q ss_pred eeecCCCCCcccccHHHH-HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc---
Q 007645 169 YFTFPGGGTMFADGADKY-IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER--- 244 (595)
Q Consensus 169 ~~~fp~~g~~F~~~a~~y-i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er--- 244 (595)
-++|......|....-.+ .+.|.+.++...+. +|||+|||.|.++..|++... ...++-+|++..+++.|+++
T Consensus 128 ~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~~--~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~ 204 (300)
T COG2813 128 ELTFKTLPGVFSRDKLDKGSRLLLETLPPDLGG--KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAA 204 (300)
T ss_pred ceEEEeCCCCCcCCCcChHHHHHHHhCCccCCC--cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHH
Confidence 344444455555444333 45677777766555 899999999999999999965 56888899999999999875
Q ss_pred -CCCe-EEEEcccccCCCCCCceeEEEEcCCCcccccCHH----HHHHHHHhhcCCCcEEEEEcCCCCCCCCchh-HHHH
Q 007645 245 -GIPA-FVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNA----TYLIEVDRLLRPGGYLVISGPPVQWPKQDKE-WADL 317 (595)
Q Consensus 245 -g~~~-~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~~----~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~-w~~l 317 (595)
++.. .+...+. -.+..+ +||+|+|+--|+.-.+-.. .++.+..+.|++||.|+|+.. .... -..|
T Consensus 205 N~~~~~~v~~s~~-~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan------~~l~y~~~L 276 (300)
T COG2813 205 NGVENTEVWASNL-YEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN------RHLPYEKKL 276 (300)
T ss_pred cCCCccEEEEecc-cccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc------CCCChHHHH
Confidence 4444 3444333 234444 9999999988854332222 789999999999999999975 1222 2235
Q ss_pred HHHHHHcCcEEEEeecceeEee
Q 007645 318 QAVARALCYELIAVDGNTVIWK 339 (595)
Q Consensus 318 ~~la~~~~w~~v~~~~~~~iw~ 339 (595)
++++. .-+.+.+.....|++
T Consensus 277 ~~~Fg--~v~~la~~~gf~Vl~ 296 (300)
T COG2813 277 KELFG--NVEVLAKNGGFKVLR 296 (300)
T ss_pred HHhcC--CEEEEEeCCCEEEEE
Confidence 55554 345566655555543
No 83
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.99 E-value=1.2e-09 Score=97.13 Aligned_cols=100 Identities=28% Similarity=0.449 Sum_probs=79.9
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCC--CCCCceeEEEEcCC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLP--FPAFSFDIVHCSRC 273 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LP--fpd~sFDlV~~s~v 273 (595)
.+|||+|||+|.++..+++.+ ...++++|+++..++.|+.+ +. ++.+.+.|...+. +++++||+|+++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 389999999999999999986 45899999999999999876 22 5788898877664 77899999999877
Q ss_pred Cccccc-------CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 274 LIPFTA-------YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 274 L~h~~~-------d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+..... ....+++++.++|||||.+++..|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 754321 124789999999999999999865
No 84
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.98 E-value=3.3e-09 Score=114.14 Aligned_cols=99 Identities=20% Similarity=0.313 Sum_probs=80.7
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccC--CCCCCceeEEEEcCCC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRL--PFPAFSFDIVHCSRCL 274 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~L--Pfpd~sFDlV~~s~vL 274 (595)
..+||||||+|.++..++.+. ....+.|+|+++.+++.|.++ ++ ++.+..+|+..+ .++++++|.|++++..
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPd 202 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPV 202 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCC
Confidence 389999999999999999985 345889999999998877654 44 577788887654 5788999999998754
Q ss_pred cccccCH------HHHHHHHHhhcCCCcEEEEEc
Q 007645 275 IPFTAYN------ATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 275 ~h~~~d~------~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+|+... ..++.++.|+|+|||.+.+.+
T Consensus 203 -PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 203 -PWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred -CccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 665322 478999999999999999986
No 85
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.97 E-value=5.6e-09 Score=112.56 Aligned_cols=131 Identities=16% Similarity=0.165 Sum_probs=89.7
Q ss_pred CeeecCCCCCcccccHHHH-HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc--
Q 007645 168 PYFTFPGGGTMFADGADKY-IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER-- 244 (595)
Q Consensus 168 ~~~~fp~~g~~F~~~a~~y-i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er-- 244 (595)
..+.+......|....-.. .+.+.+.++...+ .+|||+|||+|.++..+++++. ...++++|+|+.+++.|+++
T Consensus 197 ~~~~~~~~~gVFs~~~LD~GtrllL~~lp~~~~--~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~ 273 (378)
T PRK15001 197 TDWTIHNHANVFSRTGLDIGARFFMQHLPENLE--GEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVE 273 (378)
T ss_pred ceEEEEecCCccCCCCcChHHHHHHHhCCcccC--CeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHH
Confidence 3344444444444332222 3445566665433 3899999999999999998853 45889999999999999865
Q ss_pred --CC----CeEEEEcccccCCCCCCceeEEEEcCCCcccc---c-CHHHHHHHHHhhcCCCcEEEEEc
Q 007645 245 --GI----PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT---A-YNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 245 --g~----~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~---~-d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+. .+.+...|... .+++.+||+|+|+..++.-. . ....++.++.++|+|||.|+++.
T Consensus 274 ~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 274 TNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred HcCcccCceEEEEEccccc-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 22 34555555432 23456899999998774321 1 12478999999999999999986
No 86
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.97 E-value=2.1e-08 Score=101.10 Aligned_cols=137 Identities=17% Similarity=0.288 Sum_probs=96.2
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC-eEEEEccccc
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRR 257 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~-~~~~~~d~~~ 257 (595)
...+++.+.+.+.. ...+|||+|||+|.++..+++.. ....++++|+++.+++.|+++ +.. +.+...+...
T Consensus 73 ~~~l~~~~l~~~~~---~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 148 (251)
T TIGR03534 73 TEELVEAALERLKK---GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE 148 (251)
T ss_pred hHHHHHHHHHhccc---CCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc
Confidence 44566666665542 23489999999999999999863 234788999999999988765 443 6777777654
Q ss_pred CCCCCCceeEEEEcCCCcc------cccC-------------------HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCch
Q 007645 258 LPFPAFSFDIVHCSRCLIP------FTAY-------------------NATYLIEVDRLLRPGGYLVISGPPVQWPKQDK 312 (595)
Q Consensus 258 LPfpd~sFDlV~~s~vL~h------~~~d-------------------~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~ 312 (595)
++++++||+|+|+..+.. +..+ ...++.++.++|+|||.+++... + .
T Consensus 149 -~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~---~----~ 220 (251)
T TIGR03534 149 -PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG---Y----D 220 (251)
T ss_pred -cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC---c----c
Confidence 456789999999654321 1100 12568899999999999999753 1 1
Q ss_pred hHHHHHHHHHHcCcEEEEe
Q 007645 313 EWADLQAVARALCYELIAV 331 (595)
Q Consensus 313 ~w~~l~~la~~~~w~~v~~ 331 (595)
.-..+.+++++.+|+.+..
T Consensus 221 ~~~~~~~~l~~~gf~~v~~ 239 (251)
T TIGR03534 221 QGEAVRALFEAAGFADVET 239 (251)
T ss_pred HHHHHHHHHHhCCCCceEE
Confidence 1235777788888866544
No 87
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.97 E-value=6.3e-09 Score=103.63 Aligned_cols=109 Identities=14% Similarity=0.113 Sum_probs=81.2
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP 259 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP 259 (595)
.....+.+.+....+. +|||||||+|.++..|++.......++++|+++.+++.|+++ +. ++.+...|.....
T Consensus 64 ~~~~~~~~~l~~~~~~--~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~ 141 (215)
T TIGR00080 64 HMVAMMTELLELKPGM--KVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW 141 (215)
T ss_pred HHHHHHHHHhCCCCcC--EEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC
Confidence 3445566666655544 999999999999999988733334588899999999998865 43 4677777776544
Q ss_pred CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 260 FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 260 fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
...+.||+|++..+..+. ...+.+.|+|||++++..
T Consensus 142 ~~~~~fD~Ii~~~~~~~~-------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 142 EPLAPYDRIYVTAAGPKI-------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred cccCCCCEEEEcCCcccc-------cHHHHHhcCcCcEEEEEE
Confidence 445689999988765443 356788999999999864
No 88
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.96 E-value=3.5e-09 Score=110.58 Aligned_cols=145 Identities=18% Similarity=0.248 Sum_probs=96.9
Q ss_pred CCCCCcccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCe
Q 007645 173 PGGGTMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPA 248 (595)
Q Consensus 173 p~~g~~F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~ 248 (595)
-..+..|+.|...-.+...+.+........+|||+|||+|.++...++.|.. .+.++|+++.+++.|+++ ++..
T Consensus 134 idPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~~N~~~~ 211 (295)
T PF06325_consen 134 IDPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAELNGVED 211 (295)
T ss_dssp ESTTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHHHTT-TT
T ss_pred ECCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHHcCCCe
Confidence 3445667777766655555555433333459999999999999988888754 678899999999988876 5544
Q ss_pred EEEEcccccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEE
Q 007645 249 FVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYEL 328 (595)
Q Consensus 249 ~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~ 328 (595)
.+...... ....+.||+|+++-.. + -...++..+.++|+|||+|++|+- . ......+.+.+++ +|++
T Consensus 212 ~~~v~~~~--~~~~~~~dlvvANI~~-~---vL~~l~~~~~~~l~~~G~lIlSGI----l--~~~~~~v~~a~~~-g~~~ 278 (295)
T PF06325_consen 212 RIEVSLSE--DLVEGKFDLVVANILA-D---VLLELAPDIASLLKPGGYLILSGI----L--EEQEDEVIEAYKQ-GFEL 278 (295)
T ss_dssp CEEESCTS--CTCCS-EEEEEEES-H-H---HHHHHHHHCHHHEEEEEEEEEEEE----E--GGGHHHHHHHHHT-TEEE
T ss_pred eEEEEEec--ccccccCCEEEECCCH-H---HHHHHHHHHHHhhCCCCEEEEccc----c--HHHHHHHHHHHHC-CCEE
Confidence 44332222 2345899999987533 1 234678889999999999999984 1 1224456666666 8887
Q ss_pred EEee
Q 007645 329 IAVD 332 (595)
Q Consensus 329 v~~~ 332 (595)
+...
T Consensus 279 ~~~~ 282 (295)
T PF06325_consen 279 VEER 282 (295)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7553
No 89
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=6e-09 Score=108.33 Aligned_cols=120 Identities=24% Similarity=0.369 Sum_probs=83.8
Q ss_pred CcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCC-CceeEEEEcCCC
Q 007645 200 TLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPA-FSFDIVHCSRCL 274 (595)
Q Consensus 200 ~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd-~sFDlV~~s~vL 274 (595)
+.++|||+|||+|.++...++.|.. .+.++|+++-+++.|+++ +++..........+..+. +.||+|+++- |
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-L 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-L 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-h
Confidence 4569999999999999999998764 688999999999998876 444211111111222333 5899999985 3
Q ss_pred cccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 275 IPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 275 ~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
-+ -...+..++.+.|||||++++|+. . .++ -+.+.+..++.+|+++..
T Consensus 239 A~---vl~~La~~~~~~lkpgg~lIlSGI---l--~~q-~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 239 AE---VLVELAPDIKRLLKPGGRLILSGI---L--EDQ-AESVAEAYEQAGFEVVEV 286 (300)
T ss_pred HH---HHHHHHHHHHHHcCCCceEEEEee---h--HhH-HHHHHHHHHhCCCeEeEE
Confidence 12 235788999999999999999984 1 111 233555566668887755
No 90
>PRK14968 putative methyltransferase; Provisional
Probab=98.96 E-value=2e-08 Score=96.53 Aligned_cols=119 Identities=18% Similarity=0.232 Sum_probs=87.0
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC---eEEEEcccccCCCCCCceeEEEEcCCC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP---AFVAMLGTRRLPFPAFSFDIVHCSRCL 274 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~---~~~~~~d~~~LPfpd~sFDlV~~s~vL 274 (595)
.+|||+|||+|.++..++.++ ..+.++|.++.+++.++++ +.. +.+...|... ++.+++||+|+++..+
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPY 100 (188)
T ss_pred CEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCc
Confidence 389999999999999999873 4788999999999988654 332 5666666544 3455689999987654
Q ss_pred cccc--------------------cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEE
Q 007645 275 IPFT--------------------AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIA 330 (595)
Q Consensus 275 ~h~~--------------------~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~ 330 (595)
.+.. .....+++++.++|||||.+++..+... .-+.+.+++++.+|+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~------~~~~l~~~~~~~g~~~~~ 170 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT------GEDEVLEYLEKLGFEAEV 170 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC------CHHHHHHHHHHCCCeeee
Confidence 3311 0134679999999999999988765211 124577888888987654
No 91
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.95 E-value=5.3e-09 Score=109.58 Aligned_cols=110 Identities=19% Similarity=0.243 Sum_probs=83.4
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCC
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFP 261 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfp 261 (595)
+.+.+.+.... ..+|||||||+|.++..++++. ....++.+|. +.+++.++++ +. .+.+...|..+.+++
T Consensus 139 ~~l~~~~~~~~--~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~ 214 (306)
T TIGR02716 139 QLLLEEAKLDG--VKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP 214 (306)
T ss_pred HHHHHHcCCCC--CCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC
Confidence 34444444433 3499999999999999999884 3356778897 6788877654 43 366778887666665
Q ss_pred CCceeEEEEcCCCcccccCH-HHHHHHHHhhcCCCcEEEEEcC
Q 007645 262 AFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 262 d~sFDlV~~s~vL~h~~~d~-~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+ +|+|++++++++|.++. ..+|+++.++|||||++++.+.
T Consensus 215 ~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 215 E--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred C--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 3 69999999998886432 5789999999999999999874
No 92
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.95 E-value=1.9e-08 Score=98.90 Aligned_cols=125 Identities=15% Similarity=0.133 Sum_probs=87.5
Q ss_pred hhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEccccc-CCCCCCc
Q 007645 192 QYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRR-LPFPAFS 264 (595)
Q Consensus 192 ~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~-LPfpd~s 264 (595)
..+....+. +|||+|||+|.++..++..-.....+.++|.++.+++.|+++ ++ ++.+...+... ++..++.
T Consensus 34 ~~l~~~~~~--~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 34 SKLRLRKGD--MILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEK 111 (198)
T ss_pred HHcCCCCcC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence 344444444 899999999999998876522234788999999999988765 42 45666666654 3333468
Q ss_pred eeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEE
Q 007645 265 FDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYEL 328 (595)
Q Consensus 265 FDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~ 328 (595)
||.|++.... .+...++.++.++|||||++++.... .....++.+.+++.+|+.
T Consensus 112 ~D~V~~~~~~----~~~~~~l~~~~~~LkpgG~lv~~~~~------~~~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 112 FDRIFIGGGS----EKLKEIISASWEIIKKGGRIVIDAIL------LETVNNALSALENIGFNL 165 (198)
T ss_pred CCEEEECCCc----ccHHHHHHHHHHHcCCCcEEEEEeec------HHHHHHHHHHHHHcCCCe
Confidence 9999986422 35678999999999999999985431 112345666677777743
No 93
>PLN03075 nicotianamine synthase; Provisional
Probab=98.94 E-value=6.2e-09 Score=108.36 Aligned_cols=101 Identities=15% Similarity=0.191 Sum_probs=80.8
Q ss_pred cceEEEECCCCcHHHHHHhh-cCCceEEEEeecCcHHHHHHHHHcC-------CCeEEEEcccccCCCCCCceeEEEEcC
Q 007645 201 LRTALDMGCGVASFGGSMLS-ENILTLSFAPRDSHKAQIQFALERG-------IPAFVAMLGTRRLPFPAFSFDIVHCSR 272 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~-~gv~~~~v~~vD~s~~~l~~A~erg-------~~~~~~~~d~~~LPfpd~sFDlV~~s~ 272 (595)
.++|+|||||.|.+++.++. +-.....++++|.++++++.|++.. ..+.|..+|+..++-..+.||+|+|.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~- 202 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA- 202 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-
Confidence 45899999998866555443 3345568999999999999998753 23788888877654335789999999
Q ss_pred CCcccc-cCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 273 CLIPFT-AYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 273 vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
++++|. ++...++..+.+.|+|||++++-.
T Consensus 203 ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 888885 678899999999999999999976
No 94
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.93 E-value=1e-08 Score=108.79 Aligned_cols=131 Identities=20% Similarity=0.188 Sum_probs=94.8
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC-eEEEEcccccCCC
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPF 260 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~-~~~~~~d~~~LPf 260 (595)
....+.++.....+. +|||+|||+|.++..++..+ ..+.++|+++.+++.|+++ +.. +.+...|+.++|+
T Consensus 170 la~~~~~l~~~~~g~--~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~ 244 (329)
T TIGR01177 170 LARAMVNLARVTEGD--RVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPL 244 (329)
T ss_pred HHHHHHHHhCCCCcC--EEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCc
Confidence 344445544444444 89999999999988876654 3688999999999988765 433 5778889999998
Q ss_pred CCCceeEEEEcCCCcc---c----c-cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 261 PAFSFDIVHCSRCLIP---F----T-AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 261 pd~sFDlV~~s~vL~h---~----~-~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
++++||+|+++..+.. . . +....++.++.|+|||||++++..|.. . .++++++..+| ++..
T Consensus 245 ~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~------~---~~~~~~~~~g~-i~~~ 313 (329)
T TIGR01177 245 SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR------I---DLESLAEDAFR-VVKR 313 (329)
T ss_pred ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC------C---CHHHHHhhcCc-chhe
Confidence 8899999999643211 0 0 113688999999999999999987632 1 24467788888 5543
No 95
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.90 E-value=7.9e-09 Score=108.34 Aligned_cols=102 Identities=17% Similarity=0.172 Sum_probs=75.2
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc------CCCeEEEEccccc-CCCCCC----ceeEEE
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER------GIPAFVAMLGTRR-LPFPAF----SFDIVH 269 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er------g~~~~~~~~d~~~-LPfpd~----sFDlV~ 269 (595)
..+|||+|||+|..+..|+++......++++|+|++|++.|+++ ++++..+++|..+ ++++.. ...+++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 34899999999999999998743245789999999999988765 2345566777654 344332 234555
Q ss_pred EcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 270 CSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 270 ~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+...+.++. ++...+|+++.++|+|||.|++..
T Consensus 144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred ecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 556666654 234588999999999999999865
No 96
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.89 E-value=1.3e-08 Score=85.46 Aligned_cols=97 Identities=27% Similarity=0.364 Sum_probs=76.4
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc-----CCCeEEEEcccccCCC-CCCceeEEEEcCCCcc
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER-----GIPAFVAMLGTRRLPF-PAFSFDIVHCSRCLIP 276 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er-----g~~~~~~~~d~~~LPf-pd~sFDlV~~s~vL~h 276 (595)
++||+|||.|.++..+++. ....+.++|.++.+++.+++. .....+...+...... ..++||+|++..++++
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 4899999999999999883 245888999999999888722 2245666666655543 5678999999999866
Q ss_pred cccCHHHHHHHHHhhcCCCcEEEEE
Q 007645 277 FTAYNATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 277 ~~~d~~~~L~Ei~RvLRPGG~lvls 301 (595)
+......++..+.+.|+|||.++++
T Consensus 79 ~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 LVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3456779999999999999999886
No 97
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.85 E-value=7.4e-09 Score=98.71 Aligned_cols=73 Identities=23% Similarity=0.166 Sum_probs=64.5
Q ss_pred eecCcHHHHHHHHHcC--------CCeEEEEcccccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEE
Q 007645 230 PRDSHKAQIQFALERG--------IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 230 ~vD~s~~~l~~A~erg--------~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls 301 (595)
++|+|++|++.|+++. .++.+.++|+.++|+++++||+|++..+++++. +...+|+|+.|+|||||.|++.
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV-DRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC-CHHHHHHHHHHHcCcCeEEEEE
Confidence 6899999999997652 247899999999999999999999999997765 8899999999999999999988
Q ss_pred cC
Q 007645 302 GP 303 (595)
Q Consensus 302 ~p 303 (595)
+.
T Consensus 81 d~ 82 (160)
T PLN02232 81 DF 82 (160)
T ss_pred EC
Confidence 64
No 98
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.83 E-value=4e-08 Score=94.44 Aligned_cols=121 Identities=21% Similarity=0.314 Sum_probs=91.7
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHH----cCCC--eEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE----RGIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~e----rg~~--~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
+|||+|||.|.+...|++.+... .++++|.|+.+++.|+. ++.+ +.|.++|+..-.+..+.||+|+--..+..
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 89999999999999999998753 48999999999987753 3555 78999998776777888999986443321
Q ss_pred cc-------cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 277 FT-------AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 277 ~~-------~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
.. ..+..++..+.++|+|||.|+|..- +|. ..+|.+.++..+++++..
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC--N~T-----~dELv~~f~~~~f~~~~t 203 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC--NFT-----KDELVEEFENFNFEYLST 203 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEec--Ccc-----HHHHHHHHhcCCeEEEEe
Confidence 11 1224678899999999999999865 333 345777777777776655
No 99
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.83 E-value=1.7e-08 Score=99.45 Aligned_cols=112 Identities=21% Similarity=0.317 Sum_probs=71.3
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccCH
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN 281 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~ 281 (595)
..|-|+|||.+.++..+.. +..+.++ |+-. .+..+..+|+..+|++++++|++++..+| +..+.
T Consensus 74 ~viaD~GCGdA~la~~~~~-~~~V~Sf---DLva----------~n~~Vtacdia~vPL~~~svDv~VfcLSL--MGTn~ 137 (219)
T PF05148_consen 74 LVIADFGCGDAKLAKAVPN-KHKVHSF---DLVA----------PNPRVTACDIANVPLEDESVDVAVFCLSL--MGTNW 137 (219)
T ss_dssp S-EEEES-TT-HHHHH--S----EEEE---ESS-----------SSTTEEES-TTS-S--TT-EEEEEEES-----SS-H
T ss_pred EEEEECCCchHHHHHhccc-CceEEEe---eccC----------CCCCEEEecCccCcCCCCceeEEEEEhhh--hCCCc
Confidence 4899999999999977643 3444444 5422 12236678999999999999999976655 44688
Q ss_pred HHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEeec
Q 007645 282 ATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDG 333 (595)
Q Consensus 282 ~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~~~ 333 (595)
..++.|+.|+|||||.|.|.+...... .-+...+.++++||++..+..
T Consensus 138 ~~fi~EA~RvLK~~G~L~IAEV~SRf~----~~~~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 138 PDFIREANRVLKPGGILKIAEVKSRFE----NVKQFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEGGG-S-----HHHHHHHHHCTTEEEEEEE-
T ss_pred HHHHHHHHheeccCcEEEEEEecccCc----CHHHHHHHHHHCCCeEEeccc
Confidence 999999999999999999987533222 345677888999999997643
No 100
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.82 E-value=8.1e-08 Score=98.47 Aligned_cols=136 Identities=15% Similarity=0.241 Sum_probs=91.5
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC-----CCeEEEEcccccC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG-----IPAFVAMLGTRRL 258 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg-----~~~~~~~~d~~~L 258 (595)
+.+++.+.+.+.... ..+|||+|||+|.++..++... ....++++|+++.+++.|+++. .++.+...|...
T Consensus 94 e~l~~~~~~~~~~~~--~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~- 169 (275)
T PRK09328 94 EELVEWALEALLLKE--PLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE- 169 (275)
T ss_pred HHHHHHHHHhccccC--CCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-
Confidence 445555554443333 3489999999999999998874 2357899999999999998762 246777776533
Q ss_pred CCCCCceeEEEEcCCCcccc-------------------------cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchh
Q 007645 259 PFPAFSFDIVHCSRCLIPFT-------------------------AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKE 313 (595)
Q Consensus 259 Pfpd~sFDlV~~s~vL~h~~-------------------------~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~ 313 (595)
++++++||+|+|+....... +....++.++.++|+|||++++... +. .
T Consensus 170 ~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g---~~----~ 242 (275)
T PRK09328 170 PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG---YD----Q 242 (275)
T ss_pred cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC---ch----H
Confidence 33457999999964322110 0124678888899999999999642 11 1
Q ss_pred HHHHHHHHHHcCcEEEE
Q 007645 314 WADLQAVARALCYELIA 330 (595)
Q Consensus 314 w~~l~~la~~~~w~~v~ 330 (595)
-..+.+++++.+|..+.
T Consensus 243 ~~~~~~~l~~~gf~~v~ 259 (275)
T PRK09328 243 GEAVRALLAAAGFADVE 259 (275)
T ss_pred HHHHHHHHHhCCCceeE
Confidence 23466677777776443
No 101
>PTZ00146 fibrillarin; Provisional
Probab=98.79 E-value=7.4e-08 Score=100.11 Aligned_cols=130 Identities=11% Similarity=0.017 Sum_probs=82.9
Q ss_pred ccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHH----HHHHHHHcCCCeEEEEccccc---CCCCCCceeEE
Q 007645 196 ITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKA----QIQFALERGIPAFVAMLGTRR---LPFPAFSFDIV 268 (595)
Q Consensus 196 ~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~----~l~~A~erg~~~~~~~~d~~~---LPfpd~sFDlV 268 (595)
...+. +|||+|||+|.++..+++.--..-.|.++|+++. +++.|.++ .++.++..|+.. +.....+||+|
T Consensus 130 IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV 206 (293)
T PTZ00146 130 IKPGS--KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVI 206 (293)
T ss_pred cCCCC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEE
Confidence 44444 9999999999999999987222236788899986 45555544 456677777543 22234589999
Q ss_pred EEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCC-CCCC--chhHHHHHHHHHHcCcEEEEe
Q 007645 269 HCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQ-WPKQ--DKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 269 ~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~-~~~~--~~~w~~l~~la~~~~w~~v~~ 331 (595)
++.... +++...++.++.++|||||+|++...... +... +..+.+-.+.+++.+|+.+..
T Consensus 207 ~~Dva~---pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~ 269 (293)
T PTZ00146 207 FADVAQ---PDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQ 269 (293)
T ss_pred EEeCCC---cchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 987642 22445677899999999999999643111 1100 111111124566677876643
No 102
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.79 E-value=2.9e-08 Score=105.38 Aligned_cols=102 Identities=27% Similarity=0.328 Sum_probs=75.6
Q ss_pred CcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---------------CCeEEEEccccc------C
Q 007645 200 TLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---------------IPAFVAMLGTRR------L 258 (595)
Q Consensus 200 ~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---------------~~~~~~~~d~~~------L 258 (595)
...+|||+|||-|.-..-....++ ..++++|++...++.|++|. ..+.+...|... +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 355999999999987777777655 47899999999999998874 345667776532 2
Q ss_pred CCCCCceeEEEEcCCCcccccCHH---HHHHHHHhhcCCCcEEEEEcC
Q 007645 259 PFPAFSFDIVHCSRCLIPFTAYNA---TYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 259 Pfpd~sFDlV~~s~vL~h~~~d~~---~~L~Ei~RvLRPGG~lvls~p 303 (595)
+.....||+|-|.+++|+..+..+ .+|..+...|||||+|+.++|
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 222359999999999977665443 689999999999999999987
No 103
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.78 E-value=1.9e-07 Score=101.39 Aligned_cols=138 Identities=14% Similarity=0.137 Sum_probs=93.5
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLP 259 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LP 259 (595)
+.+++.+.+.++ . ..+|||+|||+|.++..++... ....++++|+|+.+++.|+++ +.++.+...|.....
T Consensus 239 E~LVe~aL~~l~--~--~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~ 313 (423)
T PRK14966 239 EHLVEAVLARLP--E--NGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTD 313 (423)
T ss_pred HHHHHHhhhccC--C--CCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccc
Confidence 445555555443 2 2389999999999999988653 234788999999999998875 556778888865433
Q ss_pred CC-CCceeEEEEcCCCcccc--------------------cC----HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhH
Q 007645 260 FP-AFSFDIVHCSRCLIPFT--------------------AY----NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEW 314 (595)
Q Consensus 260 fp-d~sFDlV~~s~vL~h~~--------------------~d----~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w 314 (595)
++ .++||+|+|+--...-. ++ ...++.++.+.|+|||.+++... + ..-
T Consensus 314 l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG---~----~Q~ 386 (423)
T PRK14966 314 MPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG---F----DQG 386 (423)
T ss_pred cccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC---c----cHH
Confidence 32 45899999976432110 00 12556777889999999988653 1 123
Q ss_pred HHHHHHHHHcCcEEEEeec
Q 007645 315 ADLQAVARALCYELIAVDG 333 (595)
Q Consensus 315 ~~l~~la~~~~w~~v~~~~ 333 (595)
+.+++++++.+|..+....
T Consensus 387 e~V~~ll~~~Gf~~v~v~k 405 (423)
T PRK14966 387 AAVRGVLAENGFSGVETLP 405 (423)
T ss_pred HHHHHHHHHCCCcEEEEEE
Confidence 3577888888887654433
No 104
>PHA03411 putative methyltransferase; Provisional
Probab=98.78 E-value=1.3e-07 Score=97.51 Aligned_cols=126 Identities=11% Similarity=-0.006 Sum_probs=92.2
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccC-
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY- 280 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d- 280 (595)
.+|||+|||+|.++..++.+.. ...++++|+++.+++.|+++..++.+...|+..+. .+++||+|+++..+.+....
T Consensus 66 grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccccCchh
Confidence 4899999999999988877621 24789999999999999988667888888887665 34689999998888764311
Q ss_pred ------------------HHHHHHHHHhhcCCCcEEEEEcC--CCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 281 ------------------NATYLIEVDRLLRPGGYLVISGP--PVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 281 ------------------~~~~L~Ei~RvLRPGG~lvls~p--~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
....+..+.++|+|+|.+.+.-- +.+. ....=.+..++++..++.+...
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~--~sl~~~~y~~~l~~~g~~~~~~ 212 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYD--GTMKSNKYLKWSKQTGLVTYAG 212 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccccc--ccCCHHHHHHHHHhcCcEecCC
Confidence 13566778889999998776532 2221 1112445778888888877644
No 105
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.78 E-value=9.8e-08 Score=96.95 Aligned_cols=141 Identities=16% Similarity=0.248 Sum_probs=98.6
Q ss_pred HHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C--CCeEEEEcccccCC--CC
Q 007645 190 LKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G--IPAFVAMLGTRRLP--FP 261 (595)
Q Consensus 190 L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g--~~~~~~~~d~~~LP--fp 261 (595)
|.+...... ..+|||+|||+|..+..++++--. ..++++|+++.+.++|+++ + ..+.+.+.|...+. ..
T Consensus 36 L~~~~~~~~--~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~ 112 (248)
T COG4123 36 LAAFAPVPK--KGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV 112 (248)
T ss_pred HHhhccccc--CCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc
Confidence 334444333 458999999999999999998333 6899999999999999876 1 24677788876653 33
Q ss_pred CCceeEEEEcCCCccccc-----------------CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHc
Q 007645 262 AFSFDIVHCSRCLIPFTA-----------------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARAL 324 (595)
Q Consensus 262 d~sFDlV~~s~vL~h~~~-----------------d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~ 324 (595)
..+||+|+|+--+..-.. +.+.+++-+.++|||||++.++-++ ....++.++++++
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~-------erl~ei~~~l~~~ 185 (248)
T COG4123 113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP-------ERLAEIIELLKSY 185 (248)
T ss_pred ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH-------HHHHHHHHHHHhc
Confidence 457999999764432211 2347788899999999999998752 2233567778887
Q ss_pred CcEEEEeecceeEeeccCC
Q 007645 325 CYELIAVDGNTVIWKKPVG 343 (595)
Q Consensus 325 ~w~~v~~~~~~~iw~K~~~ 343 (595)
+|..... ..|+.|+..
T Consensus 186 ~~~~k~i---~~V~p~~~k 201 (248)
T COG4123 186 NLEPKRI---QFVYPKIGK 201 (248)
T ss_pred CCCceEE---EEecCCCCC
Confidence 7766544 344444433
No 106
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.77 E-value=1.8e-07 Score=97.42 Aligned_cols=119 Identities=13% Similarity=0.124 Sum_probs=84.7
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCCCCceeEEEEcCCCc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfpd~sFDlV~~s~vL~ 275 (595)
.+|||+|||+|.++..++.+. ....++++|+|+.+++.|+++ ++ .+.+...|... ++++++||+|+|+--..
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCC
Confidence 489999999999999999873 234788999999999998875 44 36777777533 34556899999963211
Q ss_pred -------------ccc-----------cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEE
Q 007645 276 -------------PFT-----------AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIA 330 (595)
Q Consensus 276 -------------h~~-----------~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~ 330 (595)
|-+ +....++.++.++|+|||++++... ..+..+.+++...+|....
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g--------~~~~~v~~~~~~~~~~~~~ 271 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG--------NSMEALEEAYPDVPFTWLE 271 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC--------cCHHHHHHHHHhCCCceee
Confidence 100 0113668899999999999998764 1234677777776665543
No 107
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.77 E-value=7e-08 Score=97.20 Aligned_cols=99 Identities=13% Similarity=0.038 Sum_probs=83.0
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHH-----------------cCCCeEEEEcccccCCCC---
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE-----------------RGIPAFVAMLGTRRLPFP--- 261 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~e-----------------rg~~~~~~~~d~~~LPfp--- 261 (595)
.+||+.|||.|.-+..|+++|. +|+++|+|+.+++.+.+ ++..+.+.++|...++..
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence 4899999999999999999987 67888999999998755 245678889998888642
Q ss_pred CCceeEEEEcCCCcccccC-HHHHHHHHHhhcCCCcEEEEEcC
Q 007645 262 AFSFDIVHCSRCLIPFTAY-NATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 262 d~sFDlV~~s~vL~h~~~d-~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.+.||+|+-..+|++++++ ...+.+.+.++|+|||.+++..-
T Consensus 122 ~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 122 LPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred cCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 2689999999999888744 35899999999999999988763
No 108
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.77 E-value=2.5e-08 Score=99.02 Aligned_cols=133 Identities=15% Similarity=0.209 Sum_probs=90.7
Q ss_pred CcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC-----CCeEEEEcccccCCCCCCceeEEEEcCCC
Q 007645 200 TLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG-----IPAFVAMLGTRRLPFPAFSFDIVHCSRCL 274 (595)
Q Consensus 200 ~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg-----~~~~~~~~d~~~LPfpd~sFDlV~~s~vL 274 (595)
...++||.|||.|..+..|+-.-... +.-+|..+..++.|++.- ....+.+.+++.+..+.+.||+|++.+|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~--VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDE--VDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SE--EEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCE--eEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 35689999999999999887664554 444789999999999642 22567777788876556899999999999
Q ss_pred cccc-cCHHHHHHHHHhhcCCCcEEEEEcCCCC-----CCCCchh----HHHHHHHHHHcCcEEEEeecc
Q 007645 275 IPFT-AYNATYLIEVDRLLRPGGYLVISGPPVQ-----WPKQDKE----WADLQAVARALCYELIAVDGN 334 (595)
Q Consensus 275 ~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p~~~-----~~~~~~~----w~~l~~la~~~~w~~v~~~~~ 334 (595)
.|++ ++.-.+|+.+...|+|+|.+++-+.-.. +...+.. -..+.+++++.+++++..+.+
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 9998 3445999999999999999999665211 1112211 556899999999999987543
No 109
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.76 E-value=1.5e-07 Score=97.80 Aligned_cols=138 Identities=14% Similarity=0.115 Sum_probs=89.8
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--eEEEEccccc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRR 257 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~~d~~~ 257 (595)
..+++.+.+.+....+ ..+|||+|||+|.++..++... ....++++|+|+.+++.|+++ +.. +.+...|...
T Consensus 99 e~lv~~~l~~~~~~~~-~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~ 176 (284)
T TIGR00536 99 EELVEKALASLISQNP-ILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE 176 (284)
T ss_pred HHHHHHHHHHhhhcCC-CCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc
Confidence 4455554443321111 1489999999999999999873 234788999999999998875 443 6777777543
Q ss_pred CCCCCCceeEEEEcCC-------------Ccccc-----------cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchh
Q 007645 258 LPFPAFSFDIVHCSRC-------------LIPFT-----------AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKE 313 (595)
Q Consensus 258 LPfpd~sFDlV~~s~v-------------L~h~~-----------~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~ 313 (595)
++++++||+|+++-- +.|-+ .....++.++.+.|+|||++++... + ..
T Consensus 177 -~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g---~----~q 248 (284)
T TIGR00536 177 -PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG---N----WQ 248 (284)
T ss_pred -cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC---c----cH
Confidence 345558999999621 11111 0233678899999999999998653 1 11
Q ss_pred HHHHHHHHH-HcCcEEEEe
Q 007645 314 WADLQAVAR-ALCYELIAV 331 (595)
Q Consensus 314 w~~l~~la~-~~~w~~v~~ 331 (595)
-..+.+++. ..+|..+..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 249 QKSLKELLRIKFTWYDVEN 267 (284)
T ss_pred HHHHHHHHHhcCCCceeEE
Confidence 124566655 456755433
No 110
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.75 E-value=1.2e-07 Score=94.06 Aligned_cols=106 Identities=15% Similarity=0.108 Sum_probs=77.1
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCC
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPF 260 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPf 260 (595)
....+.+.+....+. +|||+|||+|.++..|++.. ..+.++|.++.+++.|+++ +. ++.+...+......
T Consensus 66 ~~~~l~~~l~~~~~~--~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 140 (212)
T PRK00312 66 MVARMTELLELKPGD--RVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP 140 (212)
T ss_pred HHHHHHHhcCCCCCC--EEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC
Confidence 344555556555444 89999999999998887763 2688899999999988775 33 36777776543222
Q ss_pred CCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 261 PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 261 pd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+.++||+|++..++.++ ..++.+.|+|||.+++...
T Consensus 141 ~~~~fD~I~~~~~~~~~-------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 141 AYAPFDRILVTAAAPEI-------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred cCCCcCEEEEccCchhh-------hHHHHHhcCCCcEEEEEEc
Confidence 34789999998766443 3567899999999999753
No 111
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.75 E-value=4.3e-08 Score=98.79 Aligned_cols=124 Identities=20% Similarity=0.296 Sum_probs=86.8
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeE
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDI 267 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDl 267 (595)
+.|.+.+....+ ...|-|+|||.+.++..-. ..+..++++++ +-.+...|+.++|++|++.|+
T Consensus 169 d~ii~~ik~r~~-~~vIaD~GCGEakiA~~~~-~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDv 231 (325)
T KOG3045|consen 169 DVIIRKIKRRPK-NIVIADFGCGEAKIASSER-HKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDV 231 (325)
T ss_pred HHHHHHHHhCcC-ceEEEecccchhhhhhccc-cceeeeeeecC---------------CCceeeccccCCcCccCcccE
Confidence 444445544433 3478999999998886211 12333333322 345677889999999999999
Q ss_pred EEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEeecc
Q 007645 268 VHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGN 334 (595)
Q Consensus 268 V~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~~~~ 334 (595)
+++. |.-+..+...++.|++|+|+|||.++|......+. .-..+.+.+..+||+.......
T Consensus 232 aV~C--LSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~----dv~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 232 AVFC--LSLMGTNLADFIKEANRILKPGGLLYIAEVKSRFS----DVKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred EEee--HhhhcccHHHHHHHHHHHhccCceEEEEehhhhcc----cHHHHHHHHHHcCCeeeehhhh
Confidence 9965 44455688999999999999999999987533332 2334777888999998876544
No 112
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.74 E-value=6.5e-08 Score=94.23 Aligned_cols=95 Identities=13% Similarity=0.012 Sum_probs=68.4
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCC--------CCCCceeEEEEcCC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLP--------FPAFSFDIVHCSRC 273 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LP--------fpd~sFDlV~~s~v 273 (595)
.+|||+|||+|.++..++.+......+.++|+++.+ ...++.+.+.+..+.+ +++++||+|++..+
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~ 107 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAA 107 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCC
Confidence 489999999999999888764333468889999854 2234566666765432 45678999998654
Q ss_pred Cc---cccc-------CHHHHHHHHHhhcCCCcEEEEEc
Q 007645 274 LI---PFTA-------YNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 274 L~---h~~~-------d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.+ +|.. +...++.++.++|+|||++++..
T Consensus 108 ~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 108 PNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 21 1111 12578999999999999999965
No 113
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.73 E-value=1.2e-08 Score=101.15 Aligned_cols=99 Identities=21% Similarity=0.281 Sum_probs=87.8
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc---CCCeEEEEcccccCCCCCCceeEEEEcCCCccc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER---GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 277 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er---g~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~ 277 (595)
..+++|||||.|.....|...++. .+.-+|.|..|++.++.. ++.....+.|-+.|+|.+++||+|+++..+ ||
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~ve--kli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl-HW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVE--KLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL-HW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcchh--heeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhh-hh
Confidence 448999999999999999999854 677889999999998865 455677788999999999999999999998 99
Q ss_pred ccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 278 TAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 278 ~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
..+....+..+...|||+|.|+-+.
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASM 174 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHH
Confidence 9888999999999999999998764
No 114
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.71 E-value=1.8e-07 Score=91.69 Aligned_cols=107 Identities=17% Similarity=0.102 Sum_probs=75.9
Q ss_pred HHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEccccc-CCCCC
Q 007645 189 KLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRR-LPFPA 262 (595)
Q Consensus 189 ~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~-LPfpd 262 (595)
.+.+.+....+. +|||+|||+|.++..++... ....++++|.++.+++.|+++ +. ++.+...++.. ++...
T Consensus 31 ~l~~~l~~~~~~--~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~ 107 (196)
T PRK07402 31 LLISQLRLEPDS--VLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLA 107 (196)
T ss_pred HHHHhcCCCCCC--EEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCC
Confidence 455556544444 89999999999999987653 235788999999999988764 33 46677666543 22222
Q ss_pred CceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 263 FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
..+|.++... ..+...++.++.++|+|||++++..+
T Consensus 108 ~~~d~v~~~~-----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 108 PAPDRVCIEG-----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCCCEEEEEC-----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 3457665432 23457899999999999999999864
No 115
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.71 E-value=6.3e-08 Score=96.89 Aligned_cols=120 Identities=22% Similarity=0.276 Sum_probs=86.9
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCC-ceEEEEeecCcHHHHHHHHHcCC------CeEEEEcccc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENI-LTLSFAPRDSHKAQIQFALERGI------PAFVAMLGTR 256 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv-~~~~v~~vD~s~~~l~~A~erg~------~~~~~~~d~~ 256 (595)
.-..+..-++++.......+||+||||.|....-+++-+. ....+.+.|.|+.+++..+++.. .+.+..++..
T Consensus 55 ~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~ 134 (264)
T KOG2361|consen 55 NWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSP 134 (264)
T ss_pred HHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccch
Confidence 3344555566654443344899999999998888877632 23678899999999999887622 1222222222
Q ss_pred c--CCCCCCceeEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 257 R--LPFPAFSFDIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 257 ~--LPfpd~sFDlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
. -|.+.+++|+|++.++|.-.. +....++.++.++|||||.+++.+.
T Consensus 135 ~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 135 SLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred hccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 2 356789999999999998776 3446899999999999999999864
No 116
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.69 E-value=2.5e-07 Score=101.66 Aligned_cols=126 Identities=16% Similarity=0.169 Sum_probs=86.6
Q ss_pred hhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCC--CCCCce
Q 007645 192 QYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLP--FPAFSF 265 (595)
Q Consensus 192 ~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LP--fpd~sF 265 (595)
..+....+ .+|||+|||+|..+..++++... ..++++|.++.+++.++++ |..+.+...|+..++ ++.++|
T Consensus 238 ~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~f 314 (427)
T PRK10901 238 TLLAPQNG--ERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPF 314 (427)
T ss_pred HHcCCCCC--CEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCC
Confidence 34444444 48999999999999999987422 4788999999999988765 556677788877654 346789
Q ss_pred eEEEEcCCCc-----------ccccC----------HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHH
Q 007645 266 DIVHCSRCLI-----------PFTAY----------NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARA 323 (595)
Q Consensus 266 DlV~~s~vL~-----------h~~~d----------~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~ 323 (595)
|.|++..... .|... ...+|.++.++|||||++++++-.....+++ ..+..++++
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene---~~v~~~l~~ 390 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENE---QQIKAFLAR 390 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCH---HHHHHHHHh
Confidence 9999533111 11111 2368999999999999999998633333222 244455543
No 117
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.67 E-value=3.7e-08 Score=102.00 Aligned_cols=101 Identities=25% Similarity=0.258 Sum_probs=80.7
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC-----------CCeEEEEccc------ccCCCCCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG-----------IPAFVAMLGT------RRLPFPAF 263 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg-----------~~~~~~~~d~------~~LPfpd~ 263 (595)
...+||+|||-|.-+.-.-.+++. .+.++|+++..++.|++|. ..+.|..+|. ..+++++.
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kAgI~--~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKAGIG--EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccceeccCCcccHhHhhhhccc--ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 447999999999888877777664 7889999999999998771 2467777774 33566777
Q ss_pred ceeEEEEcCCCcccccC---HHHHHHHHHhhcCCCcEEEEEcC
Q 007645 264 SFDIVHCSRCLIPFTAY---NATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 264 sFDlV~~s~vL~h~~~d---~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+||+|-|.+|+|.-.+. ...+|..+.+.|||||+|+-+.|
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 79999999999543333 34789999999999999999988
No 118
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.66 E-value=1.9e-07 Score=94.88 Aligned_cols=122 Identities=18% Similarity=0.278 Sum_probs=90.1
Q ss_pred CCCCCcccccHHHHHHHHHhhc-cccC-CCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEE
Q 007645 173 PGGGTMFADGADKYIDKLKQYI-PITG-GTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFV 250 (595)
Q Consensus 173 p~~g~~F~~~a~~yi~~L~~~l-~~~~-g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~ 250 (595)
.|.|.+|--...++.+.+...- .... ....++||||+|.|..+..|+.. + -.+...+.|..|...-+++|..+.
T Consensus 65 LgRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~-f--~~v~aTE~S~~Mr~rL~~kg~~vl- 140 (265)
T PF05219_consen 65 LGRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPL-F--KEVYATEASPPMRWRLSKKGFTVL- 140 (265)
T ss_pred hcCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhh-c--ceEEeecCCHHHHHHHHhCCCeEE-
Confidence 4677777777777765554221 1111 13458999999999999999876 2 256777999999999899997532
Q ss_pred EEcccccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 251 AMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 251 ~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+..+..-.+.+||+|.|.++|.. ..+|..+|+++.+.|+|+|.++++.
T Consensus 141 ---~~~~w~~~~~~fDvIscLNvLDR-c~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 141 ---DIDDWQQTDFKFDVISCLNVLDR-CDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred ---ehhhhhccCCceEEEeehhhhhc-cCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 22233334568999999999944 4588999999999999999999864
No 119
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.64 E-value=1.3e-07 Score=94.24 Aligned_cols=112 Identities=15% Similarity=0.115 Sum_probs=79.0
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEccccc
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRR 257 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~ 257 (595)
+......+.+.+...++. +|||||||+|.+++.|+..--....++.+|.++...+.|+++ +. ++.+.++|...
T Consensus 57 ~P~~~a~~l~~L~l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~ 134 (209)
T PF01135_consen 57 APSMVARMLEALDLKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSE 134 (209)
T ss_dssp -HHHHHHHHHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGG
T ss_pred HHHHHHHHHHHHhcCCCC--EEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhh
Confidence 445566777788777766 999999999999999988722233677889999999999876 44 57788877544
Q ss_pred CCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 258 LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 258 LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
---....||.|++.......+ ..+.+.||+||++++-..
T Consensus 135 g~~~~apfD~I~v~~a~~~ip-------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 135 GWPEEAPFDRIIVTAAVPEIP-------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp TTGGG-SEEEEEESSBBSS---------HHHHHTEEEEEEEEEEES
T ss_pred ccccCCCcCEEEEeeccchHH-------HHHHHhcCCCcEEEEEEc
Confidence 322346899999998774432 346777999999999653
No 120
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.64 E-value=7e-07 Score=94.06 Aligned_cols=116 Identities=13% Similarity=0.099 Sum_probs=81.6
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCCCCceeEEEEcCCCc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfpd~sFDlV~~s~vL~ 275 (595)
.+|||+|||+|.++..++... ....++++|+|+.+++.|+++ +. .+.+...|... ++++++||+|+|+--..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 489999999999999998863 335788999999999998876 43 36777777543 23456899999973211
Q ss_pred -------------ccc-----------cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcE
Q 007645 276 -------------PFT-----------AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYE 327 (595)
Q Consensus 276 -------------h~~-----------~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~ 327 (595)
|.+ +....++.++.+.|+|||++++... + ....+.+++...++.
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g---~-----~~~~~~~~~~~~~~~ 280 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG---N-----SRVHLEEAYPDVPFT 280 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC---c-----CHHHHHHHHhhCCCE
Confidence 111 0113678999999999999999653 1 123466666655543
No 121
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.63 E-value=1.2e-06 Score=89.73 Aligned_cols=138 Identities=14% Similarity=0.109 Sum_probs=89.1
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC--CCeEEEEccccc-CC
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG--IPAFVAMLGTRR-LP 259 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg--~~~~~~~~d~~~-LP 259 (595)
...+++.+.+.+.... ...+|||+|||+|.++..++... ....++++|+++.+++.|+++. ....+...|... ++
T Consensus 70 Te~Lv~~~l~~~~~~~-~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~ 147 (251)
T TIGR03704 70 TEFLVDEAAALARPRS-GTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALP 147 (251)
T ss_pred HHHHHHHHHHhhcccC-CCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcc
Confidence 4455666555443221 23479999999999999988762 2346889999999999988762 124566666543 22
Q ss_pred C-CCCceeEEEEcCCCcccc---------------------cC----HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchh
Q 007645 260 F-PAFSFDIVHCSRCLIPFT---------------------AY----NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKE 313 (595)
Q Consensus 260 f-pd~sFDlV~~s~vL~h~~---------------------~d----~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~ 313 (595)
- ..++||+|+++--..... .+ ...++..+.++|+|||.+++.... ..
T Consensus 148 ~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~-------~~ 220 (251)
T TIGR03704 148 TALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE-------RQ 220 (251)
T ss_pred hhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-------ch
Confidence 1 135799999975332110 01 126677888999999999997641 11
Q ss_pred HHHHHHHHHHcCcEEE
Q 007645 314 WADLQAVARALCYELI 329 (595)
Q Consensus 314 w~~l~~la~~~~w~~v 329 (595)
-..+..++++.+|+..
T Consensus 221 ~~~v~~~l~~~g~~~~ 236 (251)
T TIGR03704 221 APLAVEAFARAGLIAR 236 (251)
T ss_pred HHHHHHHHHHCCCCce
Confidence 2356667776666544
No 122
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.63 E-value=4.8e-07 Score=99.61 Aligned_cols=128 Identities=16% Similarity=0.099 Sum_probs=87.4
Q ss_pred hhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC----CCC
Q 007645 192 QYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP----FPA 262 (595)
Q Consensus 192 ~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP----fpd 262 (595)
..+....+. +|||+|||+|..+..+++..-....++++|+++.+++.++++ |. ++.+...|+..++ +.+
T Consensus 246 ~~l~~~~g~--~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 246 PLLDPQPGE--VILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred HHhCCCCcC--EEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccccccc
Confidence 344444444 899999999999999987622234788999999999888765 54 4677778877665 456
Q ss_pred CceeEEEEc------CCCccccc---------------CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHH
Q 007645 263 FSFDIVHCS------RCLIPFTA---------------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVA 321 (595)
Q Consensus 263 ~sFDlV~~s------~vL~h~~~---------------d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la 321 (595)
++||.|++. .++.+-++ ....+|.++.++|||||++++++-..... ..-..++.++
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~---Ene~~v~~~l 400 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPA---ENEAQIEQFL 400 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh---hHHHHHHHHH
Confidence 789999963 22222110 13477999999999999999988533222 2233455555
Q ss_pred HHc
Q 007645 322 RAL 324 (595)
Q Consensus 322 ~~~ 324 (595)
++.
T Consensus 401 ~~~ 403 (434)
T PRK14901 401 ARH 403 (434)
T ss_pred HhC
Confidence 543
No 123
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.62 E-value=3.2e-07 Score=97.13 Aligned_cols=109 Identities=11% Similarity=0.072 Sum_probs=78.3
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP 259 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP 259 (595)
.+...+.+.+....+. +|||+|||+|.++..+++.......++++|.++.+++.|+++ +. ++.+..+|....+
T Consensus 67 ~l~a~ll~~L~i~~g~--~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~ 144 (322)
T PRK13943 67 SLMALFMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHHHhcCCCCCC--EEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcc
Confidence 3444555555555444 899999999999999987632222578899999999988764 44 3667777766555
Q ss_pred CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 260 FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 260 fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
...++||+|++...+.+. ...+.+.|+|||.+++..
T Consensus 145 ~~~~~fD~Ii~~~g~~~i-------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 145 PEFAPYDVIFVTVGVDEV-------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cccCCccEEEECCchHHh-------HHHHHHhcCCCCEEEEEe
Confidence 455789999998655332 335678999999998864
No 124
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.61 E-value=4.3e-07 Score=99.81 Aligned_cols=128 Identities=16% Similarity=0.133 Sum_probs=85.3
Q ss_pred HHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEE--EEcccccCCC--C
Q 007645 190 LKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFV--AMLGTRRLPF--P 261 (595)
Q Consensus 190 L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~--~~~d~~~LPf--p 261 (595)
+...+....+ .+|||+|||+|..+..+++... ...++++|+++.+++.++++ |..+.+ ..++....++ +
T Consensus 230 ~~~~L~~~~g--~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~ 306 (426)
T TIGR00563 230 VATWLAPQNE--ETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAE 306 (426)
T ss_pred HHHHhCCCCC--CeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccc
Confidence 3344444444 4899999999999999988632 35789999999999888765 555333 4445444443 5
Q ss_pred CCceeEEEEc------CCCccccc-----C----------HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHH
Q 007645 262 AFSFDIVHCS------RCLIPFTA-----Y----------NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAV 320 (595)
Q Consensus 262 d~sFDlV~~s------~vL~h~~~-----d----------~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~l 320 (595)
+++||.|++. .++.+.++ . ...+|.++.++|||||++++++-.....+++ ..++.+
T Consensus 307 ~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene---~~v~~~ 383 (426)
T TIGR00563 307 NEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENS---EQIKAF 383 (426)
T ss_pred ccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCH---HHHHHH
Confidence 6789999952 23322211 1 2478999999999999999998644333333 234555
Q ss_pred HHH
Q 007645 321 ARA 323 (595)
Q Consensus 321 a~~ 323 (595)
+++
T Consensus 384 l~~ 386 (426)
T TIGR00563 384 LQE 386 (426)
T ss_pred HHh
Confidence 554
No 125
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.61 E-value=2e-07 Score=89.33 Aligned_cols=106 Identities=13% Similarity=0.086 Sum_probs=77.6
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---CCeEEEEcccccCCCCCCc
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRRLPFPAFS 264 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---~~~~~~~~d~~~LPfpd~s 264 (595)
+.+.+.+....+. +|||+|||+|.++..+++++ ..++++|+++.+++.++++. .++.+...|+..+++++.+
T Consensus 3 ~~i~~~~~~~~~~--~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~ 77 (169)
T smart00650 3 DKIVRAANLRPGD--TVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQ 77 (169)
T ss_pred HHHHHhcCCCCcC--EEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccC
Confidence 3455555544444 89999999999999999883 37888999999999998773 2577888999888888778
Q ss_pred eeEEEEcCCCcccccCHHHHHHHHHhh--cCCCcEEEEEc
Q 007645 265 FDIVHCSRCLIPFTAYNATYLIEVDRL--LRPGGYLVISG 302 (595)
Q Consensus 265 FDlV~~s~vL~h~~~d~~~~L~Ei~Rv--LRPGG~lvls~ 302 (595)
||.|+++.-+ |.. ...+..+.+. +.++|.+++.-
T Consensus 78 ~d~vi~n~Py-~~~---~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 78 PYKVVGNLPY-NIS---TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred CCEEEECCCc-ccH---HHHHHHHHhcCCCcceEEEEEEH
Confidence 9999987654 322 2333333332 45788887753
No 126
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.61 E-value=3.1e-07 Score=90.71 Aligned_cols=143 Identities=27% Similarity=0.429 Sum_probs=92.1
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHH----HHcCCCeE--EEEccccc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFA----LERGIPAF--VAMLGTRR 257 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A----~erg~~~~--~~~~d~~~ 257 (595)
+...+.|.+.++... .+|||||||||..+.+++++ ...+..-+.|.++..+.-. .+.+.+.. -...|+..
T Consensus 12 ~pIl~vL~~~l~~~~---~~vLEiaSGtGqHa~~FA~~-lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~ 87 (204)
T PF06080_consen 12 DPILEVLKQYLPDSG---TRVLEIASGTGQHAVYFAQA-LPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSA 87 (204)
T ss_pred hHHHHHHHHHhCccC---ceEEEEcCCccHHHHHHHHH-CCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCC
Confidence 344455555554432 15999999999999999987 4456788889888775322 23333210 11223322
Q ss_pred C--C------CCCCceeEEEEcCCCcccc--cCHHHHHHHHHhhcCCCcEEEEEcCCCC-CC---CC-----------ch
Q 007645 258 L--P------FPAFSFDIVHCSRCLIPFT--AYNATYLIEVDRLLRPGGYLVISGPPVQ-WP---KQ-----------DK 312 (595)
Q Consensus 258 L--P------fpd~sFDlV~~s~vL~h~~--~d~~~~L~Ei~RvLRPGG~lvls~p~~~-~~---~~-----------~~ 312 (595)
- | +..++||+|+|.+++ |.. ...+.++..+.++|+|||.|++-+|-.. -. .. +.
T Consensus 88 ~~w~~~~~~~~~~~~~D~i~~~N~l-HI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp 166 (204)
T PF06080_consen 88 PPWPWELPAPLSPESFDAIFCINML-HISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDP 166 (204)
T ss_pred CCCccccccccCCCCcceeeehhHH-HhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCC
Confidence 2 2 235689999999998 544 2345889999999999999999998211 10 00 00
Q ss_pred h-----HHHHHHHHHHcCcEEEEe
Q 007645 313 E-----WADLQAVARALCYELIAV 331 (595)
Q Consensus 313 ~-----w~~l~~la~~~~w~~v~~ 331 (595)
. .+.+.+++++.++++...
T Consensus 167 ~~GiRD~e~v~~lA~~~GL~l~~~ 190 (204)
T PF06080_consen 167 EWGIRDIEDVEALAAAHGLELEED 190 (204)
T ss_pred CcCccCHHHHHHHHHHCCCccCcc
Confidence 0 334788888888887644
No 127
>PRK00811 spermidine synthase; Provisional
Probab=98.59 E-value=5.2e-07 Score=93.97 Aligned_cols=102 Identities=12% Similarity=0.101 Sum_probs=76.0
Q ss_pred CcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC----------CCeEEEEccccc-CCCCCCceeEE
Q 007645 200 TLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG----------IPAFVAMLGTRR-LPFPAFSFDIV 268 (595)
Q Consensus 200 ~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg----------~~~~~~~~d~~~-LPfpd~sFDlV 268 (595)
..++|||||||.|..+..++++. ...+++.+|+++.+++.|++.. .++.+...|+.. +...+++||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 35689999999999999998862 2347888999999999998752 246677777544 23346789999
Q ss_pred EEcCCCcccccC----HHHHHHHHHhhcCCCcEEEEEcC
Q 007645 269 HCSRCLIPFTAY----NATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 269 ~~s~vL~h~~~d----~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++...- ++... ...+++.+.+.|+|||.+++...
T Consensus 155 i~D~~d-p~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 155 IVDSTD-PVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EECCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 986432 32211 25778999999999999998654
No 128
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.57 E-value=2.3e-07 Score=102.49 Aligned_cols=118 Identities=18% Similarity=0.137 Sum_probs=81.5
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC-eEEEEcccccCCCCCCceeEEEEc----C
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCS----R 272 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~-~~~~~~d~~~LPfpd~sFDlV~~s----~ 272 (595)
.+|||+|||+|..+..+++..-....++++|+++.+++.++++ |+. +.+...|+..++ ++++||+|++- .
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg 330 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPCTG 330 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCCCC
Confidence 4899999999999988877522224788999999999888765 543 677777877665 56789999952 1
Q ss_pred --CCc-----cccc----------CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHH
Q 007645 273 --CLI-----PFTA----------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARA 323 (595)
Q Consensus 273 --vL~-----h~~~----------d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~ 323 (595)
.+. .|.. ....+|.++.++|||||++++++-...-.++ -..++.++++
T Consensus 331 ~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~En---e~~v~~~l~~ 395 (445)
T PRK14904 331 TGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEEN---ELQIEAFLQR 395 (445)
T ss_pred cchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhH---HHHHHHHHHh
Confidence 111 0111 1236899999999999999999864333222 2235555554
No 129
>PRK01581 speE spermidine synthase; Validated
Probab=98.55 E-value=7.6e-07 Score=95.11 Aligned_cols=155 Identities=14% Similarity=0.097 Sum_probs=97.7
Q ss_pred ecCCCCCcccccHH-HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc-----
Q 007645 171 TFPGGGTMFADGAD-KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----- 244 (595)
Q Consensus 171 ~fp~~g~~F~~~a~-~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----- 244 (595)
-+..|..++...-+ .|.+.+....-......++||++|||+|..+..+++.. ....++.+|+++++++.|++.
T Consensus 120 L~LDG~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~ 198 (374)
T PRK01581 120 LYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVS 198 (374)
T ss_pred EEECCeeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccch
Confidence 34455555544333 34555555332333345699999999999999888763 345788899999999999962
Q ss_pred -------CCCeEEEEccccc-CCCCCCceeEEEEcCCCcccc-----cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCc
Q 007645 245 -------GIPAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFT-----AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQD 311 (595)
Q Consensus 245 -------g~~~~~~~~d~~~-LPfpd~sFDlV~~s~vL~h~~-----~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~ 311 (595)
..++.+...|+.. +.-.++.||+|++...- +.. -....++..+.+.|+|||.++...... +.. .
T Consensus 199 ~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~D-P~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp-~~~-~ 275 (374)
T PRK01581 199 LNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPD-PATELLSTLYTSELFARIATFLTEDGAFVCQSNSP-ADA-P 275 (374)
T ss_pred hccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCCC-ccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh-hhh-H
Confidence 2356777777654 34445789999987321 111 012468899999999999998875322 111 1
Q ss_pred hhHHHHHHHHHHcCcEEE
Q 007645 312 KEWADLQAVARALCYELI 329 (595)
Q Consensus 312 ~~w~~l~~la~~~~w~~v 329 (595)
.....+.+.+++.++...
T Consensus 276 ~~~~~i~~tL~~af~~v~ 293 (374)
T PRK01581 276 LVYWSIGNTIEHAGLTVK 293 (374)
T ss_pred HHHHHHHHHHHHhCCceE
Confidence 122224555555555444
No 130
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.55 E-value=4.1e-07 Score=91.93 Aligned_cols=97 Identities=22% Similarity=0.206 Sum_probs=77.7
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY 280 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d 280 (595)
.++|||||+|.|.++..++++. +.+.++-.|. +..++.+++ ..++.+..+|.. -++|. +|+++..++||+|.++
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~ 174 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDE 174 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-HH
T ss_pred ccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhhhcchH
Confidence 4589999999999999999884 3446777787 777888877 667888888877 66775 9999999999999833
Q ss_pred -HHHHHHHHHhhcCCC--cEEEEEcC
Q 007645 281 -NATYLIEVDRLLRPG--GYLVISGP 303 (595)
Q Consensus 281 -~~~~L~Ei~RvLRPG--G~lvls~p 303 (595)
...+|+.+.+.|+|| |+++|.+.
T Consensus 175 ~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 175 DCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp HHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 348899999999999 99999876
No 131
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.52 E-value=7.3e-07 Score=98.13 Aligned_cols=125 Identities=15% Similarity=0.160 Sum_probs=85.7
Q ss_pred hccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC-eEEEEcccccCC-CCCCcee
Q 007645 193 YIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLP-FPAFSFD 266 (595)
Q Consensus 193 ~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~-~~~~~~d~~~LP-fpd~sFD 266 (595)
.+....+. +|||+|||+|..+..+++.--....++++|+++.+++.++++ |+. +.+...|...++ +.+++||
T Consensus 232 ~l~~~~g~--~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD 309 (431)
T PRK14903 232 LMELEPGL--RVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFD 309 (431)
T ss_pred HhCCCCCC--EEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCC
Confidence 34444444 899999999999998887632234788999999999988765 543 567778877765 4567899
Q ss_pred EEEEcC-C--Cccccc------------------CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHH
Q 007645 267 IVHCSR-C--LIPFTA------------------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVAR 322 (595)
Q Consensus 267 lV~~s~-v--L~h~~~------------------d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~ 322 (595)
.|++.. | +..+.. ....+|.++.+.|||||++++++-.....+.+ ..++.+++
T Consensus 310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne---~vv~~fl~ 383 (431)
T PRK14903 310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENT---EVVKRFVY 383 (431)
T ss_pred EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCH---HHHHHHHH
Confidence 999721 1 111111 12366899999999999999998754333222 33555554
No 132
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.51 E-value=3.7e-07 Score=94.04 Aligned_cols=104 Identities=16% Similarity=0.188 Sum_probs=75.5
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCCCCCceeEEEEcC----
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSR---- 272 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPfpd~sFDlV~~s~---- 272 (595)
.+|||+|||+|..+..+++.--....+.++|+++.+++.++++ ++ ++.+...|...++...+.||.|++..
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg 152 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSG 152 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCC
Confidence 3899999999999998887622223688999999999888765 44 45677777766665566799999632
Q ss_pred --CCcc-------cc--------cCHHHHHHHHHhhcCCCcEEEEEcCCC
Q 007645 273 --CLIP-------FT--------AYNATYLIEVDRLLRPGGYLVISGPPV 305 (595)
Q Consensus 273 --vL~h-------~~--------~d~~~~L~Ei~RvLRPGG~lvls~p~~ 305 (595)
++.+ +. .....+|.++.++|||||+++.++-..
T Consensus 153 ~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 153 EGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 1111 11 012358999999999999999998643
No 133
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.48 E-value=9.3e-07 Score=97.61 Aligned_cols=112 Identities=21% Similarity=0.234 Sum_probs=78.5
Q ss_pred HhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC--CCCC
Q 007645 191 KQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP--FPAF 263 (595)
Q Consensus 191 ~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP--fpd~ 263 (595)
...+....+ .+|||+|||+|..+..+++.......++++|+++.+++.++++ |. ++.+...|...++ ++ +
T Consensus 243 ~~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~ 319 (444)
T PRK14902 243 APALDPKGG--DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-E 319 (444)
T ss_pred HHHhCCCCC--CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-c
Confidence 334444443 4899999999999999988622234788999999999888765 44 3677777876653 33 7
Q ss_pred ceeEEEEcCC------Ccc-----cccC----------HHHHHHHHHhhcCCCcEEEEEcCCC
Q 007645 264 SFDIVHCSRC------LIP-----FTAY----------NATYLIEVDRLLRPGGYLVISGPPV 305 (595)
Q Consensus 264 sFDlV~~s~v------L~h-----~~~d----------~~~~L~Ei~RvLRPGG~lvls~p~~ 305 (595)
+||+|++..- +.+ |... ...+|.++.++|||||.+++++...
T Consensus 320 ~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 320 KFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred cCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 8999997431 111 1000 1357999999999999999987533
No 134
>PHA03412 putative methyltransferase; Provisional
Probab=98.47 E-value=9.2e-07 Score=89.38 Aligned_cols=95 Identities=9% Similarity=0.069 Sum_probs=72.6
Q ss_pred ceEEEECCCCcHHHHHHhhcC--CceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccc-
Q 007645 202 RTALDMGCGVASFGGSMLSEN--ILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT- 278 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~g--v~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~- 278 (595)
.+|||+|||+|.++..++++. .....++++|+++.+++.|+++...+.+...|....++ +++||+|+++--+....
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCccc
Confidence 489999999999999887651 12348999999999999999887778888888876654 56899999987664222
Q ss_pred cC----------HHHHHHHHHhhcCCCcE
Q 007645 279 AY----------NATYLIEVDRLLRPGGY 297 (595)
Q Consensus 279 ~d----------~~~~L~Ei~RvLRPGG~ 297 (595)
.+ ...++..+.|++++|+.
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 11 23578888887777775
No 135
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.46 E-value=7.5e-07 Score=88.01 Aligned_cols=104 Identities=21% Similarity=0.282 Sum_probs=68.5
Q ss_pred CcceEEEECCCCc----HHHHHHhhc--C--CceEEEEeecCcHHHHHHHHHc--------C------------------
Q 007645 200 TLRTALDMGCGVA----SFGGSMLSE--N--ILTLSFAPRDSHKAQIQFALER--------G------------------ 245 (595)
Q Consensus 200 ~~r~VLDIGCGtG----~~a~~La~~--g--v~~~~v~~vD~s~~~l~~A~er--------g------------------ 245 (595)
..-+|+-+||++| +++..|.+. + ...+.+.+.|+|+.+++.|++- +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4568999999999 666666662 1 2257999999999999999742 1
Q ss_pred -------CCeEEEEcccccCCCCCCceeEEEEcCCCccccc-CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 246 -------IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 246 -------~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~-d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
-.+.|...++.+.+.+.+.||+|+|.+||+++.+ ....++..+.+.|+|||+|++...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 1256666666553345678999999999999873 235899999999999999999654
No 136
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=1.7e-06 Score=85.73 Aligned_cols=105 Identities=16% Similarity=0.194 Sum_probs=79.9
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccc-cC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTR-RL 258 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~-~L 258 (595)
.....+.+.+....+. +|||||||+|..++.|++..- .+..+|..+...+.|+++ |. ++.+.++|.. -+
T Consensus 59 ~~vA~m~~~L~~~~g~--~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~ 133 (209)
T COG2518 59 HMVARMLQLLELKPGD--RVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGW 133 (209)
T ss_pred HHHHHHHHHhCCCCCC--eEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCC
Confidence 3455667777777766 999999999999999998733 666778889999999876 55 5777777743 33
Q ss_pred CCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 259 PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 259 Pfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
| +...||.|+.+.+....+ ..+.+.||+||++++-.
T Consensus 134 ~-~~aPyD~I~Vtaaa~~vP-------~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 134 P-EEAPYDRIIVTAAAPEVP-------EALLDQLKPGGRLVIPV 169 (209)
T ss_pred C-CCCCcCEEEEeeccCCCC-------HHHHHhcccCCEEEEEE
Confidence 3 347899999988775554 23567889999999965
No 137
>PRK04457 spermidine synthase; Provisional
Probab=98.44 E-value=1.2e-06 Score=90.32 Aligned_cols=115 Identities=11% Similarity=0.089 Sum_probs=80.6
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC------CCeEEEEcccccC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG------IPAFVAMLGTRRL 258 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg------~~~~~~~~d~~~L 258 (595)
.|.+.+...+... ...++|||||||+|.++..+++.. ....++.+|+++++++.|++.. .++.+...|....
T Consensus 52 ~y~~~m~~~l~~~-~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~ 129 (262)
T PRK04457 52 AYTRAMMGFLLFN-PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY 129 (262)
T ss_pred HHHHHHHHHHhcC-CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH
Confidence 4555554433222 234589999999999999998773 4567899999999999999862 2356777775432
Q ss_pred -CCCCCceeEEEEcCCCc--cccc--CHHHHHHHHHhhcCCCcEEEEEc
Q 007645 259 -PFPAFSFDIVHCSRCLI--PFTA--YNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 259 -Pfpd~sFDlV~~s~vL~--h~~~--d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.-..++||+|++.. +. ..+. ....+++++.++|+|||.+++..
T Consensus 130 l~~~~~~yD~I~~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 130 IAVHRHSTDVILVDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred HHhCCCCCCEEEEeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 22236899999753 21 1111 12589999999999999999953
No 138
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.44 E-value=1.9e-06 Score=86.46 Aligned_cols=127 Identities=16% Similarity=0.157 Sum_probs=87.7
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHH-cCC----------------CeEEEEcccccCCCCC-C
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE-RGI----------------PAFVAMLGTRRLPFPA-F 263 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~e-rg~----------------~~~~~~~d~~~LPfpd-~ 263 (595)
.+||+.|||.|.-+..|+++|. +++++|+|+.+++.+.+ ++. .+.+.++|...++-.. +
T Consensus 39 ~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g 115 (218)
T PF05724_consen 39 GRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVG 115 (218)
T ss_dssp EEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHH
T ss_pred CeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcC
Confidence 4899999999999999999975 78899999999999843 332 2456778877776433 4
Q ss_pred ceeEEEEcCCCccccc-CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCC-chh----HHHHHHHHHHcCcEEEEee
Q 007645 264 SFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISGPPVQWPKQ-DKE----WADLQAVARALCYELIAVD 332 (595)
Q Consensus 264 sFDlV~~s~vL~h~~~-d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~-~~~----w~~l~~la~~~~w~~v~~~ 332 (595)
+||+|+=..+|+-+++ ....+.+.+.++|+|||.+++.+-...-... ..+ -+++++++. -+|++...+
T Consensus 116 ~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 116 KFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp SEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEE
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEe
Confidence 7999998888876663 4469999999999999995444321111111 122 345677766 567666543
No 139
>PRK03612 spermidine synthase; Provisional
Probab=98.42 E-value=3.5e-06 Score=94.95 Aligned_cols=124 Identities=18% Similarity=0.106 Sum_probs=86.3
Q ss_pred CcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc------------CCCeEEEEcccccC-CCCCCcee
Q 007645 200 TLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER------------GIPAFVAMLGTRRL-PFPAFSFD 266 (595)
Q Consensus 200 ~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er------------g~~~~~~~~d~~~L-Pfpd~sFD 266 (595)
+.++|||+|||+|..+..+++++ ...+++.+|+++++++.|+++ ..++.+...|..+. ...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 35689999999999999998763 225788899999999999983 13467777776542 33357899
Q ss_pred EEEEcCCCcccccC-----HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcE
Q 007645 267 IVHCSRCLIPFTAY-----NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYE 327 (595)
Q Consensus 267 lV~~s~vL~h~~~d-----~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~ 327 (595)
+|++...- +.... ...+++.+.+.|||||.+++...+.... ......+.+.+++.++.
T Consensus 376 vIi~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~--~~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 376 VIIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA--PKAFWSIEATLEAAGLA 438 (521)
T ss_pred EEEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccc--hHHHHHHHHHHHHcCCE
Confidence 99997533 22111 1358899999999999999876432221 12234456666677773
No 140
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.40 E-value=5.2e-06 Score=80.82 Aligned_cols=123 Identities=16% Similarity=0.076 Sum_probs=85.9
Q ss_pred HHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccc-cCCCCCC
Q 007645 190 LKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTR-RLPFPAF 263 (595)
Q Consensus 190 L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~-~LPfpd~ 263 (595)
....+...+++ +++|||||+|+.+..++.. .....+.++|-++++++..+++ +. ++.++.+++. .|+-.+
T Consensus 26 ~ls~L~~~~g~--~l~DIGaGtGsi~iE~a~~-~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~- 101 (187)
T COG2242 26 TLSKLRPRPGD--RLWDIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP- 101 (187)
T ss_pred HHHhhCCCCCC--EEEEeCCCccHHHHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-
Confidence 34555555555 9999999999999999944 3456888899999888876654 43 4566666653 333222
Q ss_pred ceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcE
Q 007645 264 SFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYE 327 (595)
Q Consensus 264 sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~ 327 (595)
+||.|+..... +.+.+|+.+...|||||++++... .-+ .-..+.+..++.++.
T Consensus 102 ~~daiFIGGg~-----~i~~ile~~~~~l~~ggrlV~nai-----tlE-~~~~a~~~~~~~g~~ 154 (187)
T COG2242 102 SPDAIFIGGGG-----NIEEILEAAWERLKPGGRLVANAI-----TLE-TLAKALEALEQLGGR 154 (187)
T ss_pred CCCEEEECCCC-----CHHHHHHHHHHHcCcCCeEEEEee-----cHH-HHHHHHHHHHHcCCc
Confidence 79999987653 567899999999999999999643 111 122344556667773
No 141
>PLN02366 spermidine synthase
Probab=98.40 E-value=3.8e-06 Score=88.59 Aligned_cols=101 Identities=15% Similarity=0.146 Sum_probs=74.5
Q ss_pred CcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---------CCeEEEEcccccC--CCCCCceeEE
Q 007645 200 TLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---------IPAFVAMLGTRRL--PFPAFSFDIV 268 (595)
Q Consensus 200 ~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---------~~~~~~~~d~~~L--Pfpd~sFDlV 268 (595)
..++||+||||.|..+.++++. .....++.+|+++.+++.|++.. .++.++..|+... ..+++.||+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 3568999999999999999887 23457788899999999998752 2467777775332 1235789999
Q ss_pred EEcCCCcccccC----HHHHHHHHHhhcCCCcEEEEEc
Q 007645 269 HCSRCLIPFTAY----NATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 269 ~~s~vL~h~~~d----~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
++-..- +.... ...+++.+.+.|+|||.++...
T Consensus 170 i~D~~d-p~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSD-PVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 985432 22211 2368999999999999998754
No 142
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.39 E-value=8.7e-08 Score=80.94 Aligned_cols=91 Identities=21% Similarity=0.225 Sum_probs=60.0
Q ss_pred EecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccchh---hhcccCCCCCCCCCccchhhccCccccccCCCC
Q 007645 446 MDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIG---VYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGS 521 (595)
Q Consensus 446 mDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig---~~~~wce~f~typrtyDl~H~~~~~s~~~~~~~ 521 (595)
||+|||.|-++..|.+.+. .+|+-.|-. ..++.+-++.--. ..+.=-+.++.-+.+||+|++.++|.++
T Consensus 1 LdiG~G~G~~~~~l~~~~~--~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~----- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGG--ASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL----- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTT--CEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-----
T ss_pred CEecCcCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-----
Confidence 7999999999999988722 233444433 4555555554322 1111122232223999999999999864
Q ss_pred CCCCCChhhhHHhhcccccCCcEEEE
Q 007645 522 NKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 522 ~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
-+...+|-|+-|+|||||+++|
T Consensus 74 ----~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 ----EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ----SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ----cCHHHHHHHHHHHcCcCeEEeC
Confidence 4677899999999999999986
No 143
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.39 E-value=2.3e-06 Score=84.40 Aligned_cols=120 Identities=23% Similarity=0.311 Sum_probs=82.1
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEccccc-CC--CCCCceeEEEEcCCC
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRR-LP--FPAFSFDIVHCSRCL 274 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~-LP--fpd~sFDlV~~s~vL 274 (595)
.+||||||.|.+...++.... ...+.|+|+....+..|.++ ++ ++.+...|+.. +. ++++++|.|+..+.=
T Consensus 20 l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred eEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 799999999999999999854 45889999999888776544 44 67888877665 22 567999999987643
Q ss_pred cccccC--------HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHH--cCcEEEE
Q 007645 275 IPFTAY--------NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARA--LCYELIA 330 (595)
Q Consensus 275 ~h~~~d--------~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~--~~w~~v~ 330 (595)
+|+.. ...+|.++.++|+|||.+.+.+- ...-.+.+.+.++. -+|+.+.
T Consensus 99 -PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD------~~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 99 -PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD------VEEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-------HHHHHHHHHHHHHHSTTEEEE-
T ss_pred -CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC------CHHHHHHHHHHHHhcCcCeEEcc
Confidence 55521 13889999999999999999872 11223345555555 3666654
No 144
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.38 E-value=2e-06 Score=88.82 Aligned_cols=102 Identities=13% Similarity=0.103 Sum_probs=73.6
Q ss_pred CcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---------CCeEEEEccccc-CCCCCCceeEEE
Q 007645 200 TLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---------IPAFVAMLGTRR-LPFPAFSFDIVH 269 (595)
Q Consensus 200 ~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---------~~~~~~~~d~~~-LPfpd~sFDlV~ 269 (595)
..++||+||||+|.++..+++.. ....++.+|+++++++.|++.. ..+.+...|... +...+++||+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 34599999999999999988774 2357888999999999998752 234555555432 222257899999
Q ss_pred EcCCCccccc--C--HHHHHHHHHhhcCCCcEEEEEcC
Q 007645 270 CSRCLIPFTA--Y--NATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 270 ~s~vL~h~~~--d--~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+.... +... + ...+++.+.+.|+|||.+++...
T Consensus 151 ~D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 151 VDSTD-PVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EeCCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 86542 2211 1 35788999999999999998743
No 145
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=1e-05 Score=84.17 Aligned_cols=119 Identities=20% Similarity=0.306 Sum_probs=81.2
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCCCCCceeEEEEcCCCccc
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 277 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~ 277 (595)
+|||+|||+|..+..++.... ...++++|+|+.+++.|+++ ++ +..++..+... +. .+.||+|+|+--...-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~-~~-~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE-PL-RGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc-cc-CCceeEEEeCCCCCCC
Confidence 799999999999999998854 36899999999999999876 43 22333333211 22 2489999996533221
Q ss_pred c-----c-----CH--------------HHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcC-cEEEEe
Q 007645 278 T-----A-----YN--------------ATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALC-YELIAV 331 (595)
Q Consensus 278 ~-----~-----d~--------------~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~-w~~v~~ 331 (595)
. + ++ ..++.++.+.|+|||.+++... +. .-+.+.+++.+.+ +..+..
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g---~~----q~~~v~~~~~~~~~~~~v~~ 261 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG---LT----QGEAVKALFEDTGFFEIVET 261 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC---CC----cHHHHHHHHHhcCCceEEEE
Confidence 1 0 11 2568889999999999999653 21 1345778888888 444433
No 146
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=7.1e-06 Score=83.23 Aligned_cols=106 Identities=18% Similarity=0.197 Sum_probs=83.5
Q ss_pred HHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCCC
Q 007645 189 KLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPA 262 (595)
Q Consensus 189 ~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfpd 262 (595)
.|...+....|+ +|||.|.|+|.++++|+..-.....+...|..+...+.|+++ ++ .+.+...|....-+++
T Consensus 85 ~I~~~~gi~pg~--rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~ 162 (256)
T COG2519 85 YIVARLGISPGS--RVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE 162 (256)
T ss_pred HHHHHcCCCCCC--EEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc
Confidence 455566677766 999999999999999997533334777889999999999887 22 2566667776665554
Q ss_pred CceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 263 FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.||+|+. .++ ++-.++..++.+|+|||.+++..|
T Consensus 163 -~vDav~L-----Dmp-~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 163 -DVDAVFL-----DLP-DPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred -ccCEEEE-----cCC-ChHHHHHHHHHHhCCCcEEEEEcC
Confidence 8999984 444 777899999999999999999887
No 147
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.30 E-value=3.3e-06 Score=85.28 Aligned_cols=98 Identities=22% Similarity=0.257 Sum_probs=78.7
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHH----HcCC-CeEEEEcccccC---CCCCCceeEEEEcCCC
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFAL----ERGI-PAFVAMLGTRRL---PFPAFSFDIVHCSRCL 274 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~----erg~-~~~~~~~d~~~L---Pfpd~sFDlV~~s~vL 274 (595)
.+||||||.|.+...+|+++.. ..+.|+++....+..|. +.++ ++.+.+.|+..+ =+++++.|-|+.++.=
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~-~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPE-KNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCC-CCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 7999999999999999999765 47888898887766554 5588 888888886544 2456699999988754
Q ss_pred cccccCH--------HHHHHHHHhhcCCCcEEEEEc
Q 007645 275 IPFTAYN--------ATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 275 ~h~~~d~--------~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+|+... ..+|.++.++|+|||.|.+.+
T Consensus 130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 -PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred -CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 676322 388999999999999999987
No 148
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.30 E-value=5.2e-06 Score=84.16 Aligned_cols=111 Identities=13% Similarity=0.112 Sum_probs=77.4
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccc
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTR 256 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~ 256 (595)
...++..+.+..+ .++|||+|||+|..+..|+..-.....++.+|.++.+++.|+++ ++ .+.+..+++.
T Consensus 56 ~g~~L~~l~~~~~-----~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~ 130 (234)
T PLN02781 56 EGLFLSMLVKIMN-----AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDAL 130 (234)
T ss_pred HHHHHHHHHHHhC-----CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHH
Confidence 3445555444433 33899999999998888876522234788999999999998876 44 3567777653
Q ss_pred cC-C-----CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 257 RL-P-----FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 257 ~L-P-----fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.. + .++++||+|++..- .+....++.++.+.|||||.+++..
T Consensus 131 ~~L~~l~~~~~~~~fD~VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 131 SALDQLLNNDPKPEFDFAFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred HHHHHHHhCCCCCCCCEEEECCC----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 32 2 12468999997532 2234578899999999999988743
No 149
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.29 E-value=4.1e-06 Score=87.38 Aligned_cols=101 Identities=15% Similarity=0.148 Sum_probs=75.0
Q ss_pred ceEEEECCCCc----HHHHHHhhcC-C--ceEEEEeecCcHHHHHHHHHc--------CC--------------------
Q 007645 202 RTALDMGCGVA----SFGGSMLSEN-I--LTLSFAPRDSHKAQIQFALER--------GI-------------------- 246 (595)
Q Consensus 202 r~VLDIGCGtG----~~a~~La~~g-v--~~~~v~~vD~s~~~l~~A~er--------g~-------------------- 246 (595)
-+|+..||.+| +++..|.+.. . ..+.|.+.|+++.+++.|++- ++
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 58999999999 5666665541 1 146799999999999999753 10
Q ss_pred --------CeEEEEcccccCCCC-CCceeEEEEcCCCccccc-CHHHHHHHHHhhcCCCcEEEEEc
Q 007645 247 --------PAFVAMLGTRRLPFP-AFSFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 247 --------~~~~~~~d~~~LPfp-d~sFDlV~~s~vL~h~~~-d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.+.|...++...+++ .+.||+|+|.++++|+.. ....++..+.+.|+|||+|++-.
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 124445555544443 578999999999999863 34689999999999999987754
No 150
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.28 E-value=6.1e-06 Score=91.18 Aligned_cols=131 Identities=18% Similarity=0.237 Sum_probs=89.3
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEccccc-
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRR- 257 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~- 257 (595)
...++.+.+.+....+ .+|||+|||+|.++..|++.. ..+.++|+|+.+++.|+++ +. ++.+..+|+..
T Consensus 283 e~l~~~vl~~l~~~~~--~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~ 357 (443)
T PRK13168 283 QKMVARALEWLDPQPG--DRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEED 357 (443)
T ss_pred HHHHHHHHHHhcCCCC--CEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHh
Confidence 4455666666654444 489999999999999999874 3788999999999998865 43 47788887643
Q ss_pred ---CCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 258 ---LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 258 ---LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
+++.+++||+|++.--.. .....+..+.+ ++|++.++++-.|.... ..+..+. +.+|++..-
T Consensus 358 l~~~~~~~~~fD~Vi~dPPr~----g~~~~~~~l~~-~~~~~ivyvSCnp~tla------RDl~~L~-~~gY~l~~i 422 (443)
T PRK13168 358 FTDQPWALGGFDKVLLDPPRA----GAAEVMQALAK-LGPKRIVYVSCNPATLA------RDAGVLV-EAGYRLKRA 422 (443)
T ss_pred hhhhhhhcCCCCEEEECcCCc----ChHHHHHHHHh-cCCCeEEEEEeChHHhh------ccHHHHh-hCCcEEEEE
Confidence 345567899999875332 22345555555 69999999987543322 1133333 346776644
No 151
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.21 E-value=8.8e-06 Score=94.85 Aligned_cols=121 Identities=14% Similarity=0.112 Sum_probs=83.2
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC---CeEEEEcccccC-CCCCCceeEEEEcCC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI---PAFVAMLGTRRL-PFPAFSFDIVHCSRC 273 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~---~~~~~~~d~~~L-Pfpd~sFDlV~~s~v 273 (595)
++|||+|||+|.++..++..|.. .++++|+|+.+++.|+++ ++ .+.+...|+.+. .-..++||+|++.--
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 48999999999999999987543 688899999999999875 44 367778775432 111468999999532
Q ss_pred Ccc----------cccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 274 LIP----------FTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 274 L~h----------~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
... ...+...++..+.++|+|||.++++....... ...+.+.+.++++...
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~-------~~~~~~~~~g~~~~~i 678 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFK-------MDEEGLAKLGLKAEEI 678 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCC-------hhHHHHHhCCCeEEEE
Confidence 110 01123467888899999999999876532222 1245555556655533
No 152
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.20 E-value=2.3e-05 Score=77.65 Aligned_cols=117 Identities=14% Similarity=0.108 Sum_probs=79.1
Q ss_pred ccHHHHHHHHHhhccc-cCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcc
Q 007645 181 DGADKYIDKLKQYIPI-TGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLG 254 (595)
Q Consensus 181 ~~a~~yi~~L~~~l~~-~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d 254 (595)
...+...+.+.+.+.. ..+ .+|||+|||+|.++..++.++. ..++++|.++.+++.++++ +. ++.+...|
T Consensus 35 p~~d~v~e~l~~~l~~~~~~--~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D 110 (199)
T PRK10909 35 PTTDRVRETLFNWLAPVIVD--ARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTN 110 (199)
T ss_pred cCCHHHHHHHHHHHhhhcCC--CEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEch
Confidence 4455666666665542 233 3899999999999997666653 4788999999999888765 33 46777777
Q ss_pred ccc-CCCCCCceeEEEEcCCCcccccCHHHHHHHHHh--hcCCCcEEEEEcC
Q 007645 255 TRR-LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDR--LLRPGGYLVISGP 303 (595)
Q Consensus 255 ~~~-LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~R--vLRPGG~lvls~p 303 (595)
+.. ++...++||+|++.--+.. .-...++..+.. +|+|+|.+++..+
T Consensus 111 ~~~~l~~~~~~fDlV~~DPPy~~--g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 111 ALSFLAQPGTPHNVVFVDPPFRK--GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred HHHHHhhcCCCceEEEECCCCCC--ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 543 3323457999999865322 122344555544 3799999998764
No 153
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.19 E-value=1.9e-05 Score=79.85 Aligned_cols=103 Identities=19% Similarity=0.146 Sum_probs=67.3
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeE-EEEcccccC-----CC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAF-VAMLGTRRL-----PF 260 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~-~~~~d~~~L-----Pf 260 (595)
+..+.+.+... -...++||+|||+|.|+..++++|. ..+.++|++.+|+.........+. +...++..+ +.
T Consensus 63 L~~~l~~~~~~-~~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~ 139 (228)
T TIGR00478 63 LKEALEEFNID-VKNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFP 139 (228)
T ss_pred HHHHHHhcCCC-CCCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCC
Confidence 34444444431 1234899999999999999999864 478899999998887555544432 333333322 21
Q ss_pred CCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 261 PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 261 pd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.-..||+++++.++ .+..+.+.|+| |.+++..
T Consensus 140 d~~~~DvsfiS~~~---------~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 140 DFATFDVSFISLIS---------ILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred CceeeeEEEeehHh---------HHHHHHHHhCc-CeEEEEc
Confidence 22367877766543 47789999999 7776544
No 154
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.18 E-value=1.4e-05 Score=84.40 Aligned_cols=113 Identities=15% Similarity=0.130 Sum_probs=77.7
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP 259 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP 259 (595)
.+.+.+.+.+....+ .+|||+|||+|.++..+++.+ ..+.++|+++.+++.|+++ ++ ++.+.+.|+..+.
T Consensus 160 ~l~~~v~~~l~~~~~--~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~ 234 (315)
T PRK03522 160 QLYATARDWVRELPP--RSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFA 234 (315)
T ss_pred HHHHHHHHHHHhcCC--CEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHH
Confidence 344444455443333 489999999999999999875 3788999999999988765 44 4788888876653
Q ss_pred C-CCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCC
Q 007645 260 F-PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQ 306 (595)
Q Consensus 260 f-pd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~ 306 (595)
. ..+.||+|++.--.. .....+.++...++|++.++++..+..
T Consensus 235 ~~~~~~~D~Vv~dPPr~----G~~~~~~~~l~~~~~~~ivyvsc~p~t 278 (315)
T PRK03522 235 TAQGEVPDLVLVNPPRR----GIGKELCDYLSQMAPRFILYSSCNAQT 278 (315)
T ss_pred HhcCCCCeEEEECCCCC----CccHHHHHHHHHcCCCeEEEEECCccc
Confidence 2 345799999874321 112233344445789998888876443
No 155
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.17 E-value=3.3e-05 Score=79.83 Aligned_cols=146 Identities=16% Similarity=0.229 Sum_probs=98.7
Q ss_pred HHHHHHhhccc--cCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHH---HHHcC---------------
Q 007645 186 YIDKLKQYIPI--TGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQF---ALERG--------------- 245 (595)
Q Consensus 186 yi~~L~~~l~~--~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~---A~erg--------------- 245 (595)
.++.|.+.++. ......+||--|||.|.++..++.+|. .+.+.+.|--|+-. .....
T Consensus 40 I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~---~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~ 116 (270)
T PF07942_consen 40 ILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY---AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSF 116 (270)
T ss_pred HHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc---eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecc
Confidence 35677777663 222345899999999999999999976 67788988887532 22210
Q ss_pred --------------C-------------CeEEEEcccccCCCCC---CceeEEEEcCCCcccccCHHHHHHHHHhhcCCC
Q 007645 246 --------------I-------------PAFVAMLGTRRLPFPA---FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG 295 (595)
Q Consensus 246 --------------~-------------~~~~~~~d~~~LPfpd---~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPG 295 (595)
+ +.....+|...+.-++ ++||+|++.+-+ .-..+.-.++..|.++||||
T Consensus 117 sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFI-DTA~Ni~~Yi~tI~~lLkpg 195 (270)
T PF07942_consen 117 SNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFI-DTAENIIEYIETIEHLLKPG 195 (270)
T ss_pred cCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEe-echHHHHHHHHHHHHHhccC
Confidence 0 0111122222222223 699999988644 55557779999999999999
Q ss_pred cEEEEEcCCCCCCCC---------chhHHHHHHHHHHcCcEEEEeecce
Q 007645 296 GYLVISGPPVQWPKQ---------DKEWADLQAVARALCYELIAVDGNT 335 (595)
Q Consensus 296 G~lvls~p~~~~~~~---------~~~w~~l~~la~~~~w~~v~~~~~~ 335 (595)
|+++=.+|-.+.... +..|+++..+++++||+.+..+..+
T Consensus 196 G~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~~i 244 (270)
T PF07942_consen 196 GYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEESSI 244 (270)
T ss_pred CEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEEee
Confidence 988888873322222 2239999999999999999775533
No 156
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.12 E-value=2.6e-05 Score=67.73 Aligned_cols=97 Identities=28% Similarity=0.358 Sum_probs=69.8
Q ss_pred EEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC--C---eEEEEccccc--CCCCC-CceeEEEEcCCCc
Q 007645 204 ALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI--P---AFVAMLGTRR--LPFPA-FSFDIVHCSRCLI 275 (595)
Q Consensus 204 VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~--~---~~~~~~d~~~--LPfpd-~sFDlV~~s~vL~ 275 (595)
+||+|||+|... .+.........+.++|.++.+++.+..... . +.+...+... +++.+ ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999855 333321111355668999998888655431 1 3566666554 78877 489999 666665
Q ss_pred ccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 276 PFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 276 h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++.. ....+.++.++|+|+|.+++...
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEec
Confidence 6553 78899999999999999999875
No 157
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.10 E-value=1.7e-05 Score=81.99 Aligned_cols=103 Identities=18% Similarity=0.229 Sum_probs=76.1
Q ss_pred CcceEEEECCCCc----HHHHHHhhcCC----ceEEEEeecCcHHHHHHHHHc---------CCC---------------
Q 007645 200 TLRTALDMGCGVA----SFGGSMLSENI----LTLSFAPRDSHKAQIQFALER---------GIP--------------- 247 (595)
Q Consensus 200 ~~r~VLDIGCGtG----~~a~~La~~gv----~~~~v~~vD~s~~~l~~A~er---------g~~--------------- 247 (595)
..-+|.-+||++| ++|..|.+... ..+.|.+.|++...++.|+.- +++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4568999999999 67777776643 257999999999999998631 111
Q ss_pred ----------eEEEEcccccCCCCCCceeEEEEcCCCccccc-CHHHHHHHHHhhcCCCcEEEEEc
Q 007645 248 ----------AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 248 ----------~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~-d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+.|...++..-++..+.||+|+|-+|++.+.. ....++..++..|+|||+|++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 23333333332324577999999999998873 33589999999999999999954
No 158
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.09 E-value=3e-05 Score=79.29 Aligned_cols=130 Identities=18% Similarity=0.185 Sum_probs=87.3
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPF 260 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPf 260 (595)
+..|...+...+|+ +|||.|.|+|+++..|+..-.....+...|.++...+.|+++ |+ .+.+...|.....|
T Consensus 29 ~~~I~~~l~i~pG~--~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 29 ISYILMRLDIRPGS--RVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHHHHTT--TT---EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--
T ss_pred HHHHHHHcCCCCCC--EEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc
Confidence 34566677778877 999999999999999997622233677779999999999876 44 47788888765444
Q ss_pred C---CCceeEEEEcCCCcccccCHHHHHHHHHhhc-CCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEE
Q 007645 261 P---AFSFDIVHCSRCLIPFTAYNATYLIEVDRLL-RPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIA 330 (595)
Q Consensus 261 p---d~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvL-RPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~ 330 (595)
. ++.||.|+. .++ ++-.++..+.++| ||||+++...|.. ++ -.+.-+.+++.+|..+.
T Consensus 107 ~~~~~~~~DavfL-----Dlp-~Pw~~i~~~~~~L~~~gG~i~~fsP~i-----eQ-v~~~~~~L~~~gf~~i~ 168 (247)
T PF08704_consen 107 DEELESDFDAVFL-----DLP-DPWEAIPHAKRALKKPGGRICCFSPCI-----EQ-VQKTVEALREHGFTDIE 168 (247)
T ss_dssp STT-TTSEEEEEE-----ESS-SGGGGHHHHHHHE-EEEEEEEEEESSH-----HH-HHHHHHHHHHTTEEEEE
T ss_pred cccccCcccEEEE-----eCC-CHHHHHHHHHHHHhcCCceEEEECCCH-----HH-HHHHHHHHHHCCCeeeE
Confidence 3 367999984 333 5666899999999 9999999987722 11 11223344556787663
No 159
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.06 E-value=5.1e-05 Score=82.78 Aligned_cols=100 Identities=16% Similarity=0.090 Sum_probs=71.1
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC---CeEEEEcccccC----CCCCCceeEEEE
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI---PAFVAMLGTRRL----PFPAFSFDIVHC 270 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~---~~~~~~~d~~~L----Pfpd~sFDlV~~ 270 (595)
.+|||+|||+|.++..++..+. ..++++|+++.+++.|+++ ++ .+.+..+|+... ....++||+|++
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 4899999999999987665542 3788899999999998865 44 357778876543 113468999999
Q ss_pred cCCCcccc--------cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 271 SRCLIPFT--------AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 271 s~vL~h~~--------~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.--...-. .+...++..+.++|+|||.+++...
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 74321110 0123445567899999999998654
No 160
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.06 E-value=3.8e-05 Score=73.37 Aligned_cols=118 Identities=18% Similarity=0.108 Sum_probs=95.2
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCC---
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLP--- 259 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LP--- 259 (595)
.....+.+.+.+....|. .|||+|.|||-++..++++++.-.++..++.+.+.+..-.++...+.++.+|+..+.
T Consensus 33 Ss~lA~~M~s~I~pesgl--pVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l 110 (194)
T COG3963 33 SSILARKMASVIDPESGL--PVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTL 110 (194)
T ss_pred cHHHHHHHHhccCcccCC--eeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHH
Confidence 344556666666655544 899999999999999999999888999999999999998888888888888876654
Q ss_pred --CCCCceeEEEEcCCCcccccC-HHHHHHHHHhhcCCCcEEEEEc
Q 007645 260 --FPAFSFDIVHCSRCLIPFTAY-NATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 260 --fpd~sFDlV~~s~vL~h~~~d-~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+.+..||.|+|.--+-.++-+ .-++|+++...|++||.++..+
T Consensus 111 ~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 111 GEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred hhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 567789999998766555522 2378999999999999999865
No 161
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.04 E-value=1.5e-05 Score=82.46 Aligned_cols=83 Identities=11% Similarity=0.095 Sum_probs=65.2
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC--CCeEEEEcccccCCCCC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG--IPAFVAMLGTRRLPFPA 262 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg--~~~~~~~~d~~~LPfpd 262 (595)
..++.+.+.+....+. +|||||||+|.++..|++++. .++++|+++.+++.++++. .++.+..+|+..+++++
T Consensus 29 ~i~~~i~~~l~~~~~~--~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 29 NILDKIVDAAGPQPGD--NVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSE 103 (272)
T ss_pred HHHHHHHHhcCCCCcC--eEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHH
Confidence 3456666666555444 899999999999999999853 7889999999999998764 46788889988887764
Q ss_pred CceeEEEEcC
Q 007645 263 FSFDIVHCSR 272 (595)
Q Consensus 263 ~sFDlV~~s~ 272 (595)
-.+|.|+++-
T Consensus 104 ~~~~~vv~Nl 113 (272)
T PRK00274 104 LQPLKVVANL 113 (272)
T ss_pred cCcceEEEeC
Confidence 3368888874
No 162
>PLN02672 methionine S-methyltransferase
Probab=98.03 E-value=6.2e-05 Score=90.52 Aligned_cols=120 Identities=10% Similarity=0.050 Sum_probs=82.7
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC----C-----------------CeEEEEcccccCCC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG----I-----------------PAFVAMLGTRRLPF 260 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg----~-----------------~~~~~~~d~~~LPf 260 (595)
.+|||+|||+|.++..++.... ...++++|+|+.+++.|+++. + ++.+...|.... +
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~-~ 197 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY-C 197 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh-c
Confidence 4899999999999999998743 247899999999999987551 1 367777776443 2
Q ss_pred CC--CceeEEEEcCCCccc-------------------------c--------cC----HHHHHHHHHhhcCCCcEEEEE
Q 007645 261 PA--FSFDIVHCSRCLIPF-------------------------T--------AY----NATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 261 pd--~sFDlV~~s~vL~h~-------------------------~--------~d----~~~~L~Ei~RvLRPGG~lvls 301 (595)
.+ ..||+|+|+--.+.- . ++ ...++.++.++|+|||.+++-
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 22 369999995432110 0 00 036788888999999999986
Q ss_pred cCCCCCCCCchhHHHHH-HHHHHcCcEEEE
Q 007645 302 GPPVQWPKQDKEWADLQ-AVARALCYELIA 330 (595)
Q Consensus 302 ~p~~~~~~~~~~w~~l~-~la~~~~w~~v~ 330 (595)
.. + ..=+.+. +++++.+|+.+.
T Consensus 278 iG---~----~q~~~v~~~l~~~~gf~~~~ 300 (1082)
T PLN02672 278 MG---G----RPGQAVCERLFERRGFRITK 300 (1082)
T ss_pred EC---c----cHHHHHHHHHHHHCCCCeeE
Confidence 53 1 1123466 588887877653
No 163
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.01 E-value=4.4e-05 Score=76.86 Aligned_cols=107 Identities=22% Similarity=0.261 Sum_probs=70.7
Q ss_pred ccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCC---eEEE-------------------
Q 007645 194 IPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIP---AFVA------------------- 251 (595)
Q Consensus 194 l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~---~~~~------------------- 251 (595)
++...-....+|||||-.|.++..+++. .....+.|+|+++..++.|++.... ....
T Consensus 52 L~~~~f~~~~~LDIGCNsG~lt~~iak~-F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~ 130 (288)
T KOG2899|consen 52 LEKDWFEPKQALDIGCNSGFLTLSIAKD-FGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQR 130 (288)
T ss_pred ccccccCcceeEeccCCcchhHHHHHHh-hccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccc
Confidence 3333333458999999999999999987 2234688999999999999875110 0000
Q ss_pred ----------------------Eccc-ccCCCCCCceeEEEEcCC--Ccccc-cCH--HHHHHHHHhhcCCCcEEEEE
Q 007645 252 ----------------------MLGT-RRLPFPAFSFDIVHCSRC--LIPFT-AYN--ATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 252 ----------------------~~d~-~~LPfpd~sFDlV~~s~v--L~h~~-~d~--~~~L~Ei~RvLRPGG~lvls 301 (595)
+.+. .-|.+....||+|.|..+ ..|+. .|. ..++..+.++|.|||+|++.
T Consensus 131 ~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 131 NEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0000 011233467999998543 22332 133 38899999999999999984
No 164
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.00 E-value=4.4e-05 Score=83.99 Aligned_cols=108 Identities=17% Similarity=0.190 Sum_probs=75.8
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEccccc---
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRR--- 257 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~--- 257 (595)
+.+.+.+.+....+ .+|||+|||+|.++..|++.. ..+.++|+++.+++.|+++ ++ ++.+..+|+..
T Consensus 280 l~~~~~~~l~~~~~--~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~ 354 (431)
T TIGR00479 280 LVDRALEALELQGE--ELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLP 354 (431)
T ss_pred HHHHHHHHhccCCC--CEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHH
Confidence 34555555544333 389999999999999998863 3688999999999998875 33 57788888654
Q ss_pred -CCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 258 -LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 258 -LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+++.+++||+|+..-.-.. -...++..+.+ |+|++.++++.
T Consensus 355 ~~~~~~~~~D~vi~dPPr~G---~~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 355 KQPWAGQIPDVLLLDPPRKG---CAAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred HHHhcCCCCCEEEECcCCCC---CCHHHHHHHHh-cCCCEEEEEcC
Confidence 2344568999997643211 12455666554 89999888874
No 165
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.99 E-value=4.2e-05 Score=81.07 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=93.6
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC-eEEE-Eccccc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVA-MLGTRR 257 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~-~~~~-~~d~~~ 257 (595)
..+...+.++.....|+ .|||==||||+++....-. +..+.|.|++..|++-|+.+ ++. ..+. ..|+..
T Consensus 183 P~lAR~mVNLa~v~~G~--~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~ 257 (347)
T COG1041 183 PRLARAMVNLARVKRGE--LVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATN 257 (347)
T ss_pred HHHHHHHHHHhccccCC--EeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCceeEEEeccccc
Confidence 44556666666666666 8999999999998776554 44778889999999999876 332 3233 348999
Q ss_pred CCCCCCceeEEEEcCCCc-----cc---ccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEE
Q 007645 258 LPFPAFSFDIVHCSRCLI-----PF---TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELI 329 (595)
Q Consensus 258 LPfpd~sFDlV~~s~vL~-----h~---~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v 329 (595)
+|+++++||.|++---.- .- .+-...+|..+.++|++||++++..| ...+ ..+...+|+.+
T Consensus 258 lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p-------~~~~----~~~~~~~f~v~ 326 (347)
T COG1041 258 LPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP-------RDPR----HELEELGFKVL 326 (347)
T ss_pred CCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC-------Ccch----hhHhhcCceEE
Confidence 999999999999832110 10 01124789999999999999999987 1111 22445677776
Q ss_pred Ee
Q 007645 330 AV 331 (595)
Q Consensus 330 ~~ 331 (595)
..
T Consensus 327 ~~ 328 (347)
T COG1041 327 GR 328 (347)
T ss_pred EE
Confidence 54
No 166
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.97 E-value=4e-05 Score=78.75 Aligned_cols=84 Identities=14% Similarity=0.220 Sum_probs=66.3
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---CCeEEEEcccccCCC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRRLPF 260 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---~~~~~~~~d~~~LPf 260 (595)
...++.+.+.+....+. +|||||||+|.++..|++++ ..++++|+++.+++.++++. .++.+..+|+..+++
T Consensus 15 ~~~~~~iv~~~~~~~~~--~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~ 89 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGD--PVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDL 89 (258)
T ss_pred HHHHHHHHHhcCCCCcC--eEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCc
Confidence 45566677766555444 89999999999999999984 36888999999999998763 357888888888776
Q ss_pred CCCceeEEEEcCCC
Q 007645 261 PAFSFDIVHCSRCL 274 (595)
Q Consensus 261 pd~sFDlV~~s~vL 274 (595)
+ .||.|+++...
T Consensus 90 ~--~~d~Vv~NlPy 101 (258)
T PRK14896 90 P--EFNKVVSNLPY 101 (258)
T ss_pred h--hceEEEEcCCc
Confidence 5 48999998654
No 167
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.96 E-value=2e-06 Score=80.12 Aligned_cols=95 Identities=20% Similarity=0.318 Sum_probs=65.5
Q ss_pred CCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccchhhhcccCCCCCCC-CCccchhhccCcccccc
Q 007645 440 PAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTY-PRTYDLIHVSGIESLIK 517 (595)
Q Consensus 440 ~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~wce~f~ty-prtyDl~H~~~~~s~~~ 517 (595)
..-.+|||+|||.|.|+..|.+.+. +|+-.|-. ..+.. +-....-++-. .... +++||+|.|..+|.+..
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~~~--~~~~~~~~fD~i~~~~~l~~~~ 92 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFDAQ--DPPFPDGSFDLIICNDVLEHLP 92 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEECH--THHCHSSSEEEEEEESSGGGSS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhhhh--hhhccccchhhHhhHHHHhhcc
Confidence 3456999999999999999987766 44444433 23322 11111111101 1112 38999999999999763
Q ss_pred CCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh
Q 007645 518 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP 551 (595)
Q Consensus 518 ~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~ 551 (595)
+...+|-+|=|+|+|||++++.+..
T Consensus 93 ---------d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 ---------DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp ---------HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred ---------cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 5789999999999999999998654
No 168
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.96 E-value=3.6e-05 Score=77.06 Aligned_cols=145 Identities=16% Similarity=0.167 Sum_probs=92.5
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C---CCeEEEEcccc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G---IPAFVAMLGTR 256 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g---~~~~~~~~d~~ 256 (595)
+.+.+.+.+.-.-......+|||...|-|.++...+++|.. .+..++.+++.++.|.-+ + ..+.++.+|+.
T Consensus 118 dP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~--~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~ 195 (287)
T COG2521 118 DPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAI--HVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAY 195 (287)
T ss_pred CcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCc--EEEEEeeCCCeEEeeccCCCCccccccccEEecccHH
Confidence 34444444433333323449999999999999999999763 333446667777777644 1 23567777765
Q ss_pred cC--CCCCCceeEEEEcCCCccccc--CHHHHHHHHHhhcCCCcEEEEEcC--CCCCCCCchhHHHHHHHHHHcCcEEEE
Q 007645 257 RL--PFPAFSFDIVHCSRCLIPFTA--YNATYLIEVDRLLRPGGYLVISGP--PVQWPKQDKEWADLQAVARALCYELIA 330 (595)
Q Consensus 257 ~L--Pfpd~sFDlV~~s~vL~h~~~--d~~~~L~Ei~RvLRPGG~lvls~p--~~~~~~~~~~w~~l~~la~~~~w~~v~ 330 (595)
++ .|+|.+||+|+----...... .-..+..|++|+|||||.++--+. ...+...+ ....+.+.+++.+|..+.
T Consensus 196 e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d-~~~gVa~RLr~vGF~~v~ 274 (287)
T COG2521 196 EVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLD-LPKGVAERLRRVGFEVVK 274 (287)
T ss_pred HHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCC-hhHHHHHHHHhcCceeee
Confidence 54 488999999984211111110 124789999999999999987553 22333222 244566777888998765
Q ss_pred e
Q 007645 331 V 331 (595)
Q Consensus 331 ~ 331 (595)
.
T Consensus 275 ~ 275 (287)
T COG2521 275 K 275 (287)
T ss_pred e
Confidence 5
No 169
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.95 E-value=0.00017 Score=76.42 Aligned_cols=107 Identities=17% Similarity=0.227 Sum_probs=68.4
Q ss_pred eeecCCCCCc-ccccHHHHHHHHHhhcccc------CCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHH
Q 007645 169 YFTFPGGGTM-FADGADKYIDKLKQYIPIT------GGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFA 241 (595)
Q Consensus 169 ~~~fp~~g~~-F~~~a~~yi~~L~~~l~~~------~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A 241 (595)
.|.+|.+.-- --.+...|+..+.+++... .+...++||||||+|.+...|+.+.. ...++++|+++.+++.|
T Consensus 76 ~wdip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A 154 (321)
T PRK11727 76 HWDIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASA 154 (321)
T ss_pred cccCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHH
Confidence 3555555311 1134567887777776432 23456899999999988888876632 45799999999999999
Q ss_pred HHc-----CCC--eEEEE-cccccC----CCCCCceeEEEEcCCCcc
Q 007645 242 LER-----GIP--AFVAM-LGTRRL----PFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 242 ~er-----g~~--~~~~~-~d~~~L----Pfpd~sFDlV~~s~vL~h 276 (595)
+++ ++. +.+.. .+...+ ..+++.||+|+|+--++.
T Consensus 155 ~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~ 201 (321)
T PRK11727 155 QAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHA 201 (321)
T ss_pred HHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEeCCCCcC
Confidence 865 232 33322 222221 124678999999987643
No 170
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.94 E-value=4.7e-05 Score=74.12 Aligned_cols=133 Identities=19% Similarity=0.169 Sum_probs=82.7
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhc--CCc------eEEEEeecCcHHHHHHHHHc----CC--CeEE
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE--NIL------TLSFAPRDSHKAQIQFALER----GI--PAFV 250 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~--gv~------~~~v~~vD~s~~~l~~A~er----g~--~~~~ 250 (595)
.....+.++.....+. .+||--||+|++..+.+.. ++. ...+.+.|+++.+++.|+++ +. .+.+
T Consensus 15 ~lA~~ll~la~~~~~~--~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~ 92 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGD--VVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDF 92 (179)
T ss_dssp HHHHHHHHHTT--TTS---EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEE
T ss_pred HHHHHHHHHhCCCCCC--EEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEE
Confidence 3444555555555444 8999999999999766544 222 12378999999999999876 33 3678
Q ss_pred EEcccccCCCCCCceeEEEEcCCCcccccC---H----HHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHH
Q 007645 251 AMLGTRRLPFPAFSFDIVHCSRCLIPFTAY---N----ATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARA 323 (595)
Q Consensus 251 ~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d---~----~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~ 323 (595)
.+.|..++++.++++|.|+++--.-.-... . ..++.++.|+|++..+++++.. ..+++.++.
T Consensus 93 ~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~-----------~~~~~~~~~ 161 (179)
T PF01170_consen 93 IQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSN-----------RELEKALGL 161 (179)
T ss_dssp EE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESC-----------CCHHHHHTS
T ss_pred EecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECC-----------HHHHHHhcc
Confidence 888999999888999999997644221111 1 2668999999999555555431 124555555
Q ss_pred cCcEEEE
Q 007645 324 LCYELIA 330 (595)
Q Consensus 324 ~~w~~v~ 330 (595)
..|+...
T Consensus 162 ~~~~~~~ 168 (179)
T PF01170_consen 162 KGWRKRK 168 (179)
T ss_dssp TTSEEEE
T ss_pred hhhceEE
Confidence 5665553
No 171
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.90 E-value=8.3e-05 Score=80.55 Aligned_cols=95 Identities=16% Similarity=0.130 Sum_probs=69.6
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC-CCCCceeEEEEcCCCc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP-FPAFSFDIVHCSRCLI 275 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP-fpd~sFDlV~~s~vL~ 275 (595)
.+|||+|||+|.++..++..+ ..+.++|+++.+++.|+++ +. ++.+...|+.... -..++||+|++.--..
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 489999999999999999764 3788999999999988865 44 5778888875432 1124699999875432
Q ss_pred ccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 276 PFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 276 h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
. -...++..+. .++|++.++++-.
T Consensus 312 G---~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 312 G---IGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred C---CcHHHHHHHH-hcCCCeEEEEEeC
Confidence 2 2234555554 4799999999864
No 172
>PLN02823 spermine synthase
Probab=97.90 E-value=0.00017 Score=77.07 Aligned_cols=116 Identities=19% Similarity=0.216 Sum_probs=78.6
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---------CCeEEEEcccc
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---------IPAFVAMLGTR 256 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---------~~~~~~~~d~~ 256 (595)
|.+.+....-......++||.||+|.|..+.++++.. ....++.+|+++..++.|++.. .++.+...|..
T Consensus 89 YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~ 167 (336)
T PLN02823 89 YHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDAR 167 (336)
T ss_pred HHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhH
Confidence 4444443322222345689999999999999988863 2347888999999999998752 34566777654
Q ss_pred c-CCCCCCceeEEEEcCCCccccc------CHHHHHH-HHHhhcCCCcEEEEEcC
Q 007645 257 R-LPFPAFSFDIVHCSRCLIPFTA------YNATYLI-EVDRLLRPGGYLVISGP 303 (595)
Q Consensus 257 ~-LPfpd~sFDlV~~s~vL~h~~~------d~~~~L~-Ei~RvLRPGG~lvls~p 303 (595)
. +...+++||+|++-. ..++.. ....+++ .+.+.|+|||.+++...
T Consensus 168 ~~L~~~~~~yDvIi~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 168 AELEKRDEKFDVIIGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred HHHhhCCCCccEEEecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 3 233457899999862 222110 1235777 89999999999988643
No 173
>PLN02476 O-methyltransferase
Probab=97.90 E-value=8.8e-05 Score=77.07 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=77.2
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccc
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTR 256 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~ 256 (595)
...++..+.+... .++|||||+|+|..+..++..-.....++.+|.++...+.|++. |. .+.+..+++.
T Consensus 106 ~g~lL~~L~~~~~-----ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~ 180 (278)
T PLN02476 106 QAQLLAMLVQILG-----AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAA 180 (278)
T ss_pred HHHHHHHHHHhcC-----CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence 3444555544433 23899999999999999987522233578889999999988765 54 3666666642
Q ss_pred c-CC-C----CCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 257 R-LP-F----PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 257 ~-LP-f----pd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
. |+ + .+++||+|+.-. ...+...++..+.++|+|||.+++-.
T Consensus 181 e~L~~l~~~~~~~~FD~VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 181 ESLKSMIQNGEGSSYDFAFVDA----DKRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred HHHHHHHhcccCCCCCEEEECC----CHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 2 22 1 236899999653 23345678899999999999988743
No 174
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.90 E-value=0.00012 Score=74.77 Aligned_cols=83 Identities=13% Similarity=0.135 Sum_probs=63.4
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---CCeEEEEcccccCCCC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRRLPFP 261 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---~~~~~~~~d~~~LPfp 261 (595)
..++.+.+.+....+ .+|||||||+|.++..|++++. .+.++|+++.+++.++++. .++.+...|+..++++
T Consensus 16 ~i~~~i~~~~~~~~~--~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 16 SVIQKIVEAANVLEG--DVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP 90 (253)
T ss_pred HHHHHHHHhcCCCCc--CEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh
Confidence 455666666655444 4899999999999999999853 4788899999999988763 4577888888887765
Q ss_pred CCcee---EEEEcCCC
Q 007645 262 AFSFD---IVHCSRCL 274 (595)
Q Consensus 262 d~sFD---lV~~s~vL 274 (595)
+|| +|+++-.+
T Consensus 91 --~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 --DFPKQLKVVSNLPY 104 (253)
T ss_pred --HcCCcceEEEcCCh
Confidence 466 77776543
No 175
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.87 E-value=7.5e-05 Score=74.40 Aligned_cols=110 Identities=17% Similarity=0.151 Sum_probs=77.9
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEccccc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRR 257 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~ 257 (595)
.+++..+.+... .++||+||+++|..+..|++.-.....++.+|.++...+.|++. |. .+.+..+++..
T Consensus 34 g~lL~~l~~~~~-----~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~ 108 (205)
T PF01596_consen 34 GQLLQMLVRLTR-----PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALE 108 (205)
T ss_dssp HHHHHHHHHHHT------SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHH
T ss_pred HHHHHHHHHhcC-----CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHh
Confidence 344555554432 34899999999999999997633345788889999999998764 44 46777776432
Q ss_pred -CC-----CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 258 -LP-----FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 258 -LP-----fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
++ .+.++||+|+.-. ...+...++..+.++|+|||.+++-.
T Consensus 109 ~l~~l~~~~~~~~fD~VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 109 VLPELANDGEEGQFDFVFIDA----DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp HHHHHHHTTTTTSEEEEEEES----TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred hHHHHHhccCCCceeEEEEcc----cccchhhHHHHHhhhccCCeEEEEcc
Confidence 22 1236899999754 23445678889999999999999864
No 176
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.86 E-value=7.8e-05 Score=73.20 Aligned_cols=151 Identities=18% Similarity=0.310 Sum_probs=94.7
Q ss_pred hhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcC-CCeEEEEeccCCCC-Cchh----HHhhccc--hhhhc
Q 007645 420 RRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTS-DPVWVMNVVPARKS-STLS----VIYDRGL--IGVYH 491 (595)
Q Consensus 420 ~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~-~~vwvmnv~p~~~~-~~l~----~i~eRGl--ig~~~ 491 (595)
+.|++++-.=.. +...++.+ ..|+|+|||.|.++.++.. .+- ..|+-.|.. .-+. .+-+.|+ +-.++
T Consensus 27 ~~~~~~~~d~l~-l~~~l~~g--~~VLDiGcGtG~~al~la~~~~~--~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~ 101 (187)
T PRK00107 27 ELWERHILDSLA-IAPYLPGG--ERVLDVGSGAGFPGIPLAIARPE--LKVTLVDSLGKKIAFLREVAAELGLKNVTVVH 101 (187)
T ss_pred HHHHHHHHHHHH-HHhhcCCC--CeEEEEcCCCCHHHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEe
Confidence 478777733222 22334433 5799999999988876643 221 244555543 3332 2223444 22233
Q ss_pred ccCCCCCCCCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCChHHHHHHHHhHhccCceeEEe
Q 007645 492 DWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVH 571 (595)
Q Consensus 492 ~wce~f~typrtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~~~~~W~~~~~ 571 (595)
.-.+.+.. ..+||+|-+.. -..+++++-++-|+|||||.+++-+.......+..+++.+-|++...
T Consensus 102 ~d~~~~~~-~~~fDlV~~~~-------------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 102 GRAEEFGQ-EEKFDVVTSRA-------------VASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEV 167 (187)
T ss_pred ccHhhCCC-CCCccEEEEcc-------------ccCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeee
Confidence 32333333 46899998643 13467899999999999999999988888899999999999986443
Q ss_pred -ccC-CCCCCCceEEEEEec
Q 007645 572 -DKE-PGSNGREKILVATKS 589 (595)
Q Consensus 572 -~~~-~~~~~~~~~l~~~K~ 589 (595)
..| +|-++.-.+.|.+|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~ 187 (187)
T PRK00107 168 IELTLPGLDGERHLVIIRKK 187 (187)
T ss_pred EEEecCCCCCcEEEEEEecC
Confidence 222 344444556777774
No 177
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.86 E-value=9.6e-05 Score=74.18 Aligned_cols=112 Identities=20% Similarity=0.194 Sum_probs=80.6
Q ss_pred ccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--eEEEE-c
Q 007645 181 DGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFVAM-L 253 (595)
Q Consensus 181 ~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~-~ 253 (595)
+....++..+....+ .++||+||.+.|..+..|+..-.....++.+|.++++.+.|+++ |.. +.... +
T Consensus 45 ~e~g~~L~~L~~~~~-----~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~g 119 (219)
T COG4122 45 PETGALLRLLARLSG-----PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGG 119 (219)
T ss_pred hhHHHHHHHHHHhcC-----CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecC
Confidence 344566666655542 34899999999999999987733234788999999999999876 443 33444 2
Q ss_pred cc-ccCC-CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEE
Q 007645 254 GT-RRLP-FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 254 d~-~~LP-fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls 301 (595)
|+ +.+. ...++||+|+.- +...+-..++..+.++|||||.+++-
T Consensus 120 dal~~l~~~~~~~fDliFID----adK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 120 DALDVLSRLLDGSFDLVFID----ADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred cHHHHHHhccCCCccEEEEe----CChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 42 2222 456899999964 44445568999999999999999884
No 178
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.84 E-value=0.00011 Score=71.03 Aligned_cols=101 Identities=19% Similarity=0.205 Sum_probs=61.6
Q ss_pred CcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C----CCeEEEEccccc-C---CCCCCceeE
Q 007645 200 TLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G----IPAFVAMLGTRR-L---PFPAFSFDI 267 (595)
Q Consensus 200 ~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g----~~~~~~~~d~~~-L---Pfpd~sFDl 267 (595)
...+|||+|||+|..+..++... ....++..|.++ .++..+.+ + ..+.+...+-.+ . ....+.||+
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred CCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 34599999999998888888772 234666678877 66655443 2 223444433111 1 123468999
Q ss_pred EEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 268 VHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 268 V~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
|+++.|+. ..+....++.-+.++|+|+|.++++.+
T Consensus 123 IlasDv~Y-~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 123 ILASDVLY-DEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEES--S--GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEecccc-hHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 99999994 455678899999999999999877765
No 179
>PRK04148 hypothetical protein; Provisional
Probab=97.84 E-value=0.00012 Score=67.99 Aligned_cols=100 Identities=9% Similarity=0.074 Sum_probs=68.4
Q ss_pred HHHhhccccCCCcceEEEECCCCcH-HHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCC-CCcee
Q 007645 189 KLKQYIPITGGTLRTALDMGCGVAS-FGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFP-AFSFD 266 (595)
Q Consensus 189 ~L~~~l~~~~g~~r~VLDIGCGtG~-~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfp-d~sFD 266 (595)
.|.+.++... ..++||||||+|. ++..|++.|. ++.++|+++..++.|++++.+ +...|..+-.+. -+.+|
T Consensus 7 ~l~~~~~~~~--~~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~--~v~dDlf~p~~~~y~~a~ 79 (134)
T PRK04148 7 FIAENYEKGK--NKKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLN--AFVDDLFNPNLEIYKNAK 79 (134)
T ss_pred HHHHhccccc--CCEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCe--EEECcCCCCCHHHHhcCC
Confidence 3445554433 3589999999995 8889998765 778889999999999998754 455565544322 35799
Q ss_pred EEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEE
Q 007645 267 IVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 267 lV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls 301 (595)
+|.+.+.- .+....+.++.+-+ |.-+++.
T Consensus 80 liysirpp----~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 80 LIYSIRPP----RDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred EEEEeCCC----HHHHHHHHHHHHHc--CCCEEEE
Confidence 99988643 24455566666554 4445554
No 180
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.83 E-value=1.2e-05 Score=82.71 Aligned_cols=95 Identities=26% Similarity=0.314 Sum_probs=76.9
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCccccc--
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA-- 279 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~-- 279 (595)
..+||+|||.|-.+.- + ....+.+.|++...+..|+..+.. ....+|+..+|+.+.+||.+++..+++|+..
T Consensus 47 sv~~d~gCGngky~~~----~-p~~~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 47 SVGLDVGCGNGKYLGV----N-PLCLIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred ceeeecccCCcccCcC----C-CcceeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhHH
Confidence 3899999999954321 1 334678899999998888877764 4566788999999999999999999999873
Q ss_pred CHHHHHHHHHhhcCCCcEEEEEc
Q 007645 280 YNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 280 d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
....+++|+.|+|||||...+..
T Consensus 121 RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 121 RRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred HHHHHHHHHHHHhcCCCceEEEE
Confidence 33589999999999999987754
No 181
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00011 Score=72.70 Aligned_cols=93 Identities=15% Similarity=0.174 Sum_probs=69.6
Q ss_pred eEEEECCCCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHc---------------CCCeEEEEcccccCCCCCCcee
Q 007645 203 TALDMGCGVASFGGSMLSE-NILTLSFAPRDSHKAQIQFALER---------------GIPAFVAMLGTRRLPFPAFSFD 266 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~er---------------g~~~~~~~~d~~~LPfpd~sFD 266 (595)
+.||+|.|+|.++..++.. +..+....++|..++.++.+.++ .....++++|....--+...||
T Consensus 85 s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~YD 164 (237)
T KOG1661|consen 85 SFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPYD 164 (237)
T ss_pred ceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCcc
Confidence 8999999999888877644 33444457889999999988765 1135667777776666678899
Q ss_pred EEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 267 IVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 267 lV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.|||...- ....+++...|+|||.+++-.
T Consensus 165 aIhvGAaa-------~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 165 AIHVGAAA-------SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred eEEEccCc-------cccHHHHHHhhccCCeEEEee
Confidence 99998543 334567788899999998854
No 182
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=97.76 E-value=4.2e-05 Score=77.67 Aligned_cols=100 Identities=18% Similarity=0.149 Sum_probs=64.7
Q ss_pred ccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccc-hhhh-cccCCCCCCCCCccchhhccCc
Q 007645 436 KLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-IGVY-HDWCEPFSTYPRTYDLIHVSGI 512 (595)
Q Consensus 436 ~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGl-ig~~-~~wce~f~typrtyDl~H~~~~ 512 (595)
.+......+|||+|||.|.++..|..... .|+-.|-. ..+..+-+++- +... .|. |.++....+||+|-++..
T Consensus 37 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~V~s~~~ 112 (251)
T PRK10258 37 MLPQRKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDI-ESLPLATATFDLAWSNLA 112 (251)
T ss_pred hcCccCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCc-ccCcCCCCcEEEEEECch
Confidence 34444567899999999999988865431 33334433 55555555542 1111 122 333322379999987665
Q ss_pred cccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 513 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 513 ~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
+. |. -+...+|-||-|+|+|||.+++.
T Consensus 113 l~-~~--------~d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 113 VQ-WC--------GNLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred hh-hc--------CCHHHHHHHHHHHcCCCeEEEEE
Confidence 54 32 24678999999999999999987
No 183
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.76 E-value=0.00025 Score=70.65 Aligned_cols=136 Identities=14% Similarity=0.096 Sum_probs=89.5
Q ss_pred HHHHHHHHhhccccCC--CcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCC-
Q 007645 184 DKYIDKLKQYIPITGG--TLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPF- 260 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g--~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPf- 260 (595)
...++.+.+....... ..-++|||||=+...... .. ...+++.+|++.. ...+.+.|.-..|.
T Consensus 33 K~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~--~~fdvt~IDLns~----------~~~I~qqDFm~rplp 98 (219)
T PF11968_consen 33 KWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TS--GWFDVTRIDLNSQ----------HPGILQQDFMERPLP 98 (219)
T ss_pred HHHHHHhhhhccccccccccceEEeecccCCCCccc--cc--CceeeEEeecCCC----------CCCceeeccccCCCC
Confidence 3445555554432221 135899999986543322 12 2346888898651 22344556555554
Q ss_pred --CCCceeEEEEcCCCccccc--CHHHHHHHHHhhcCCCcE-----EEEEcCCCC-CCCCchhHHHHHHHHHHcCcEEEE
Q 007645 261 --PAFSFDIVHCSRCLIPFTA--YNATYLIEVDRLLRPGGY-----LVISGPPVQ-WPKQDKEWADLQAVARALCYELIA 330 (595)
Q Consensus 261 --pd~sFDlV~~s~vL~h~~~--d~~~~L~Ei~RvLRPGG~-----lvls~p~~~-~~~~~~~w~~l~~la~~~~w~~v~ 330 (595)
+++.||+|+|+.||..++. ..+..+..+.+.|+|+|. |+++.|..- -+.++..-+.+.++++.+||..+.
T Consensus 99 ~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 99 KNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVK 178 (219)
T ss_pred CCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEE
Confidence 3679999999999977762 235899999999999999 999988322 222233355788999999999987
Q ss_pred eec
Q 007645 331 VDG 333 (595)
Q Consensus 331 ~~~ 333 (595)
.+.
T Consensus 179 ~~~ 181 (219)
T PF11968_consen 179 YKK 181 (219)
T ss_pred EEe
Confidence 744
No 184
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.76 E-value=8.8e-05 Score=78.38 Aligned_cols=96 Identities=17% Similarity=0.235 Sum_probs=65.9
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHH---HHHHHHcCCC--eEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQ---IQFALERGIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~---l~~A~erg~~--~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
++|||+|||+|.++..-+++|. ..+.++|.|.-+ .+.++.++.. +.+..+.++.+.+|-...|+|++-++-.-
T Consensus 62 K~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~ 139 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYF 139 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCc--ceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHH
Confidence 4999999999999998888874 356666665433 3344555654 45555556665555789999999654422
Q ss_pred cc--cCHHHHHHHHHhhcCCCcEEE
Q 007645 277 FT--AYNATYLIEVDRLLRPGGYLV 299 (595)
Q Consensus 277 ~~--~d~~~~L~Ei~RvLRPGG~lv 299 (595)
+. .-...+|..=++-|+|||.++
T Consensus 140 Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 140 LLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHhhhhhhhhhhhhhccCCCceEc
Confidence 11 123466777789999999885
No 185
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.75 E-value=0.00028 Score=73.15 Aligned_cols=167 Identities=19% Similarity=0.159 Sum_probs=102.2
Q ss_pred CCCCCCCCCcccccccccCCCcchhhhcccccccccccCCeeecCCCCCcccccHHHHHHHHHhhccc--cCCCcceEEE
Q 007645 129 GYKIPVPWPESLSKIWHANMPYNKIADRKGHQGWMKESGPYFTFPGGGTMFADGADKYIDKLKQYIPI--TGGTLRTALD 206 (595)
Q Consensus 129 ~y~~P~~wP~s~d~vwy~n~p~~~L~~~k~~q~w~~~e~~~~~fp~~g~~F~~~a~~yi~~L~~~l~~--~~g~~r~VLD 206 (595)
|++..|..-.++|+| |.|.|-......+- .+..|.+-.|=.. .........+.|.+.+.. ..+..-+|||
T Consensus 70 G~~tGFDSGstLDYV-YrN~p~G~~~~Grl------iDr~yLnaiGWrG-IR~Rk~~l~~~i~~ai~~L~~~g~pvrIlD 141 (311)
T PF12147_consen 70 GLETGFDSGSTLDYV-YRNQPQGKGPLGRL------IDRNYLNAIGWRG-IRQRKVHLEELIRQAIARLREQGRPVRILD 141 (311)
T ss_pred chhcCCCCcchHhHH-hcCCCCCcchHHHH------HHHhhhcccchHH-HHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 678888889999987 77877654432211 1111111111100 000011112222222221 2244568999
Q ss_pred ECCCCcHHHHHHhhcCCc-eEEEEeecCcHHHHHHHH----HcCCC--eEEEEcccccC---CCCCCceeEEEEcCCCcc
Q 007645 207 MGCGVASFGGSMLSENIL-TLSFAPRDSHKAQIQFAL----ERGIP--AFVAMLGTRRL---PFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 207 IGCGtG~~a~~La~~gv~-~~~v~~vD~s~~~l~~A~----erg~~--~~~~~~d~~~L---Pfpd~sFDlV~~s~vL~h 276 (595)
|.||.|......+..... ..++.-.|.++..++..+ ++|+. +.|.+.|+.+. .--+-..++++.+..++-
T Consensus 142 IAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~El 221 (311)
T PF12147_consen 142 IAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYEL 221 (311)
T ss_pred eccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEecchhh
Confidence 999999877766655222 347778899999887654 56765 47888775432 211345799999998877
Q ss_pred cccCH--HHHHHHHHhhcCCCcEEEEEcC
Q 007645 277 FTAYN--ATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 277 ~~~d~--~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+.++. ...|.-+.+.+.|||+++.+.-
T Consensus 222 F~Dn~lv~~sl~gl~~al~pgG~lIyTgQ 250 (311)
T PF12147_consen 222 FPDNDLVRRSLAGLARALEPGGYLIYTGQ 250 (311)
T ss_pred CCcHHHHHHHHHHHHHHhCCCcEEEEcCC
Confidence 76433 3678999999999999999874
No 186
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.74 E-value=8.8e-05 Score=83.42 Aligned_cols=100 Identities=16% Similarity=0.092 Sum_probs=76.0
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccC--CCCCCceeEEEEcCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRL--PFPAFSFDIVHCSRC 273 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~L--Pfpd~sFDlV~~s~v 273 (595)
...+||||||.|.|+..++..+.. ..+.|+|++...+..|.++ ++ ++.+...++..+ -++++++|.|+.++.
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 458999999999999999998554 4788899998876665433 55 345555554322 277899999998876
Q ss_pred CcccccCH--------HHHHHHHHhhcCCCcEEEEEc
Q 007645 274 LIPFTAYN--------ATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 274 L~h~~~d~--------~~~L~Ei~RvLRPGG~lvls~ 302 (595)
= +|+... ..+|.++.++|||||.+.+.+
T Consensus 427 D-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 427 D-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred C-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 4 676321 388999999999999999987
No 187
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.73 E-value=0.00028 Score=72.29 Aligned_cols=120 Identities=18% Similarity=0.264 Sum_probs=78.8
Q ss_pred HHHHHHHHHhhccccC-CCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--eEEEEc--
Q 007645 183 ADKYIDKLKQYIPITG-GTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFVAML-- 253 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~-g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~~-- 253 (595)
.+.+++.+.+.+.... -+...+||+|||+|..+..|+.. ..-..++++|.|++++..|.++ ++. +.+...
T Consensus 130 TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~-L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~m 208 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHG-LPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIM 208 (328)
T ss_pred HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhc-CCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccc
Confidence 4667666666554321 12237999999999999998876 3356888999999999998876 222 222211
Q ss_pred c---cccCCCCCCceeEEEEcCCCccccc-------------------------CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 254 G---TRRLPFPAFSFDIVHCSRCLIPFTA-------------------------YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 254 d---~~~LPfpd~sFDlV~~s~vL~h~~~-------------------------d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
. ....+...+.+|+++|+--...-.+ ..-.++.-+-|.|+|||.+++...
T Consensus 209 e~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 209 ESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 1 2233456789999999753321110 001346668899999999999764
No 188
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.00027 Score=68.98 Aligned_cols=116 Identities=13% Similarity=0.042 Sum_probs=78.1
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC----CCeEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG----IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg----~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
.++|+|+|||||.++...+-.|. ..+.++|+++.+++.++++. ..+.+...|+.+.. +.||.|+.+--|--
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCcc
Confidence 34899999999998888777764 37788999999999998773 36888988887764 66899998876654
Q ss_pred cccCH-HHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 277 FTAYN-ATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 277 ~~~d~-~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
+.... ..+|..+.++- .++.+.... ....-+++.++..|..+...
T Consensus 121 ~~rhaDr~Fl~~Ale~s----~vVYsiH~a------~~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 121 QRRHADRPFLLKALEIS----DVVYSIHKA------GSRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred ccccCCHHHHHHHHHhh----heEEEeecc------ccHHHHHHHHHhcCCeEEEE
Confidence 44221 24555555443 234433211 12334667777777665544
No 189
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.68 E-value=0.00013 Score=80.88 Aligned_cols=96 Identities=19% Similarity=0.243 Sum_probs=64.2
Q ss_pred ceEEEECCCCcHHHHHHhhcC---CceEEEEeecCcHHHHHHH----HHcC--CCeEEEEcccccCCCCCCceeEEEEcC
Q 007645 202 RTALDMGCGVASFGGSMLSEN---ILTLSFAPRDSHKAQIQFA----LERG--IPAFVAMLGTRRLPFPAFSFDIVHCSR 272 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~g---v~~~~v~~vD~s~~~l~~A----~erg--~~~~~~~~d~~~LPfpd~sFDlV~~s~ 272 (595)
..|||||||+|.+....++++ .....+.+++-++.++... ++++ -.+.++..+++....| ..+|+|++-.
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSEl 266 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSEL 266 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE--
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEec
Confidence 479999999998876655543 1355788888887766544 2333 3588899999888766 4899999843
Q ss_pred CCcccc--cCHHHHHHHHHhhcCCCcEEE
Q 007645 273 CLIPFT--AYNATYLIEVDRLLRPGGYLV 299 (595)
Q Consensus 273 vL~h~~--~d~~~~L~Ei~RvLRPGG~lv 299 (595)
.- .+. +-....|....|.|||||.++
T Consensus 267 LG-sfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 267 LG-SFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -B-TTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred cC-CccccccCHHHHHHHHhhcCCCCEEe
Confidence 22 222 233467899999999998875
No 190
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.61 E-value=0.00022 Score=74.84 Aligned_cols=83 Identities=16% Similarity=0.120 Sum_probs=63.6
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C--CCeEEEEcccccC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G--IPAFVAMLGTRRL 258 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g--~~~~~~~~d~~~L 258 (595)
..++.+.+.+....+. +|||||||+|.++..|++.+. .+.++|+++.+++.++++ + .++.+...|+...
T Consensus 23 ~i~~~Iv~~~~~~~~~--~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~ 97 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTD--TVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT 97 (294)
T ss_pred HHHHHHHHhcCCCCcC--EEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh
Confidence 4566677766655544 899999999999999998743 678899999999998875 2 3477888887666
Q ss_pred CCCCCceeEEEEcCCC
Q 007645 259 PFPAFSFDIVHCSRCL 274 (595)
Q Consensus 259 Pfpd~sFDlV~~s~vL 274 (595)
++ ..||.|+++...
T Consensus 98 ~~--~~~d~VvaNlPY 111 (294)
T PTZ00338 98 EF--PYFDVCVANVPY 111 (294)
T ss_pred cc--cccCEEEecCCc
Confidence 54 368999987544
No 191
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.59 E-value=0.00027 Score=74.89 Aligned_cols=97 Identities=16% Similarity=0.108 Sum_probs=71.8
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC-CCeEEEEcccccCCCCCCceeEEEEcCCCcccc-
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG-IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT- 278 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg-~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~- 278 (595)
....+|+|.|.|..+..++.. +.. +.+++.....+-.+++.. ..+..+-+|..+- .|. -|+|++-++|+||.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~-fp~--ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwtD 251 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSK-YPH--IKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TPK--GDAIWMKWILHDWTD 251 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHh-CCC--CceeecCHHHHHhhhhhhcCCcceeccccccc-CCC--cCeEEEEeecccCCh
Confidence 468999999999999999984 443 444566666655555443 4556665664332 333 35999999999999
Q ss_pred cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 279 AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 279 ~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++..++|+++...|+|||.+++.+.
T Consensus 252 edcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 252 EDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEec
Confidence 3446999999999999999999876
No 192
>PRK08317 hypothetical protein; Provisional
Probab=97.59 E-value=7.6e-05 Score=73.88 Aligned_cols=103 Identities=23% Similarity=0.275 Sum_probs=64.4
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCCC-eEEEEeccCCCC-CchhHHhhc--cchhhhcccCCCCC--CCC-Cccchhhc
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLSVIYDR--GLIGVYHDWCEPFS--TYP-RTYDLIHV 509 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~~-vwvmnv~p~~~~-~~l~~i~eR--Glig~~~~wce~f~--typ-rtyDl~H~ 509 (595)
+.-..-.+|||+|||.|.++..+.+.- -- -+|+-.|-. +.+..+-++ +.....+-.+..+. .++ .+||+||+
T Consensus 15 ~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~-~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 93 (241)
T PRK08317 15 LAVQPGDRVLDVGCGPGNDARELARRVGPE-GRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRS 93 (241)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEE
Confidence 333334689999999999998886531 00 133333433 556666555 11111111111111 133 79999999
Q ss_pred cCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 510 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 510 ~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
..+|.+.. +...++-++-|+|+|||++++.+
T Consensus 94 ~~~~~~~~---------~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 94 DRVLQHLE---------DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred echhhccC---------CHHHHHHHHHHHhcCCcEEEEEe
Confidence 99988653 45779999999999999999854
No 193
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.59 E-value=3.8e-05 Score=75.54 Aligned_cols=125 Identities=17% Similarity=0.171 Sum_probs=89.0
Q ss_pred eecCCCCCcccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeE
Q 007645 170 FTFPGGGTMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAF 249 (595)
Q Consensus 170 ~~fp~~g~~F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~ 249 (595)
--|.|.|++|--..+++.+.+.---+.......++||+|+|.|-.+..++.. .-.+.+.+.|..|....++.+.++.
T Consensus 82 NG~lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~---feevyATElS~tMr~rL~kk~ynVl 158 (288)
T KOG3987|consen 82 NGFLGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPT---FEEVYATELSWTMRDRLKKKNYNVL 158 (288)
T ss_pred ccccccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcch---HHHHHHHHhhHHHHHHHhhcCCcee
Confidence 3466788888877777766554333433444679999999999999988765 2245566889999988888776543
Q ss_pred EEEcccccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCC-CcEEEEEc
Q 007645 250 VAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRP-GGYLVISG 302 (595)
Q Consensus 250 ~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRP-GG~lvls~ 302 (595)
-..- .--.+-.||+|.|...|.- ..++..+|+++.-+|+| +|.++++-
T Consensus 159 ~~~e----w~~t~~k~dli~clNlLDR-c~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 159 TEIE----WLQTDVKLDLILCLNLLDR-CFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred eehh----hhhcCceeehHHHHHHHHh-hcChHHHHHHHHHHhccCCCcEEEEE
Confidence 2221 1112346999999888743 34788999999999999 88887653
No 194
>PLN02244 tocopherol O-methyltransferase
Probab=97.56 E-value=8.8e-05 Score=79.27 Aligned_cols=94 Identities=17% Similarity=0.251 Sum_probs=60.6
Q ss_pred CeeeEEecccchhHHHhhhcCC---CeEEEEeccCCCCCchhHH----hhccchhh----hcccCCCCCCCC-Cccchhh
Q 007645 441 AIRNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKSSTLSVI----YDRGLIGV----YHDWCEPFSTYP-RTYDLIH 508 (595)
Q Consensus 441 ~~RnvmDm~~~~g~faa~l~~~---~vwvmnv~p~~~~~~l~~i----~eRGlig~----~~~wce~f~typ-rtyDl~H 508 (595)
.-..|||+|||.|+++..|..+ .|..+.+.| +++..+ -++|+..- ..|.. .++ +| .+||+|.
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~----~~i~~a~~~~~~~g~~~~v~~~~~D~~-~~~-~~~~~FD~V~ 191 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSP----VQAARANALAAAQGLSDKVSFQVADAL-NQP-FEDGQFDLVW 191 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCH----HHHHHHHHHHHhcCCCCceEEEEcCcc-cCC-CCCCCccEEE
Confidence 3467999999999999888653 233333222 334332 23354221 12222 122 34 8999999
Q ss_pred ccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 509 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 509 ~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
+...+.++. +...+|-||-|+|||||.++|.+
T Consensus 192 s~~~~~h~~---------d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 192 SMESGEHMP---------DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred ECCchhccC---------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 887776553 34578999999999999999853
No 195
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.55 E-value=4.2e-05 Score=79.39 Aligned_cols=109 Identities=17% Similarity=0.277 Sum_probs=68.9
Q ss_pred HHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCC-CeEEEEeccCCCCCchhH----HhhccchhhhcccCCCCCCCC
Q 007645 427 AYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKSSTLSV----IYDRGLIGVYHDWCEPFSTYP 501 (595)
Q Consensus 427 ~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~~~l~~----i~eRGlig~~~~wce~f~typ 501 (595)
+.+.+.+. |+.| ..|||+|||.||++-.+.++ .+=|--|. -+++|+.. |-++||-.-..--+.-+...|
T Consensus 52 ~~~~~~~~--l~~G--~~vLDiGcGwG~~~~~~a~~~g~~v~git--lS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~ 125 (273)
T PF02353_consen 52 DLLCEKLG--LKPG--DRVLDIGCGWGGLAIYAAERYGCHVTGIT--LSEEQAEYARERIREAGLEDRVEVRLQDYRDLP 125 (273)
T ss_dssp HHHHTTTT----TT---EEEEES-TTSHHHHHHHHHH--EEEEEE--S-HHHHHHHHHHHHCSTSSSTEEEEES-GGG--
T ss_pred HHHHHHhC--CCCC--CEEEEeCCCccHHHHHHHHHcCcEEEEEE--CCHHHHHHHHHHHHhcCCCCceEEEEeeccccC
Confidence 33444343 5666 58999999999999999777 55333332 23366654 457887654443344444455
Q ss_pred CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 502 RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 502 rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
-+||-|=+-+.|.+. .+-+...++-+++|+|+|||.+++.
T Consensus 126 ~~fD~IvSi~~~Ehv-------g~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 126 GKFDRIVSIEMFEHV-------GRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp -S-SEEEEESEGGGT-------CGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred CCCCEEEEEechhhc-------ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 699999888888875 3356678999999999999999985
No 196
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=97.55 E-value=0.00013 Score=75.00 Aligned_cols=95 Identities=21% Similarity=0.202 Sum_probs=63.9
Q ss_pred eeEEecccchhHHHhhhcCC--CeEEEEeccCCCC-CchhHHhhcc-------c--hhhhcccCCCCCCCC-Cccchhhc
Q 007645 443 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDRG-------L--IGVYHDWCEPFSTYP-RTYDLIHV 509 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~-~~l~~i~eRG-------l--ig~~~~wce~f~typ-rtyDl~H~ 509 (595)
..|||+|||.|.++..|... +-. +|+-.|-. +-|..+-+|. . |-..+.-.+.++ || .+||+|.+
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~~--~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp-~~~~sfD~V~~ 151 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSDG--KVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP-FDDCYFDAITM 151 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC-CCCCCEeEEEE
Confidence 57999999999998887543 111 34444544 6666665542 1 111221223343 45 79999998
Q ss_pred cCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 510 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 510 ~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
+..+.++. +...+|-||-|+|||||.+++.|
T Consensus 152 ~~~l~~~~---------d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 152 GYGLRNVV---------DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred ecccccCC---------CHHHHHHHHHHHcCcCcEEEEEE
Confidence 87776542 46789999999999999998874
No 197
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=97.54 E-value=0.00011 Score=72.36 Aligned_cols=93 Identities=14% Similarity=0.195 Sum_probs=60.8
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHH----hhccch--hhhcccCCCCCCCCCccchhhccCcccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVI----YDRGLI--GVYHDWCEPFSTYPRTYDLIHVSGIESL 515 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i----~eRGli--g~~~~wce~f~typrtyDl~H~~~~~s~ 515 (595)
..|||+|||.|.++..|.... ..|+-.|-. +.+..+ -+.|+- ....|. +.+ .++.+||+|-+..+|..
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~-~~~-~~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENLPLRTDAYDI-NAA-ALNEDYDFIFSTVVFMF 106 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccc-hhc-cccCCCCEEEEeccccc
Confidence 489999999999999887653 245555544 444433 233442 111121 111 23568999998888764
Q ss_pred ccCCCCCCCCCChhhhHHhhcccccCCcEEEE
Q 007645 516 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 516 ~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
. +.-....++-++.|.|+|||++++
T Consensus 107 ~-------~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 107 L-------QAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred C-------CHHHHHHHHHHHHHHhCCCcEEEE
Confidence 4 233567899999999999998544
No 198
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.54 E-value=4.8e-05 Score=75.71 Aligned_cols=95 Identities=22% Similarity=0.338 Sum_probs=61.4
Q ss_pred eeEEecccchhHHHhhhcCC--CeEEEEeccCCC-CCchhHHhh----ccchhhhcccCCCCC--CCCCccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARK-SSTLSVIYD----RGLIGVYHDWCEPFS--TYPRTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~-~~~l~~i~e----RGlig~~~~wce~f~--typrtyDl~H~~~~~ 513 (595)
+.|||+|||.|+++..+.+. .. +|.-.+- ++++..+-+ .|+-+..+--+.-+. .+|.+||+|++..++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~---~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHL---QLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVI 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHH
Confidence 36999999999998888543 22 2222332 255554433 354321111111111 246799999998888
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.+.. +...+|-++.|+|+|||++++.+
T Consensus 78 ~~~~---------~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 78 HHIK---------DKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred HhCC---------CHHHHHHHHHHHcCCCCEEEEEE
Confidence 7553 35789999999999999999875
No 199
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.54 E-value=0.00036 Score=71.45 Aligned_cols=110 Identities=12% Similarity=0.081 Sum_probs=76.3
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccc
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTR 256 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~ 256 (595)
...++..+.+... .++||+||+++|..+..|+..-.....++.+|.++...+.|++. |+ .+.+..+++.
T Consensus 67 ~g~lL~~l~~~~~-----ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~ 141 (247)
T PLN02589 67 EGQFLNMLLKLIN-----AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL 141 (247)
T ss_pred HHHHHHHHHHHhC-----CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHH
Confidence 4455555555443 33899999999999999887632345788889999988888765 43 3566666542
Q ss_pred c-CCC------CCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEE
Q 007645 257 R-LPF------PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 257 ~-LPf------pd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls 301 (595)
. |+- ..++||+|+.-. .......++..+.+.|+|||.+++-
T Consensus 142 e~L~~l~~~~~~~~~fD~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 142 PVLDQMIEDGKYHGTFDFIFVDA----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HHHHHHHhccccCCcccEEEecC----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 2 221 136899999653 3334457788889999999998773
No 200
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.51 E-value=0.00018 Score=77.44 Aligned_cols=97 Identities=20% Similarity=0.238 Sum_probs=78.1
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
.++|+|||.|....++.... ...+.++|.++.++..+... ++ ...++..+....||++++||.+-+..+..|
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~ 190 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCH 190 (364)
T ss_pred cccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeeccc
Confidence 78999999999998887653 34667778888777665443 22 234466678888999999999999999988
Q ss_pred cccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 277 FTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 277 ~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.+ +...++.|+.|+++|||+++...
T Consensus 191 ~~-~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 191 AP-DLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred CC-cHHHHHHHHhcccCCCceEEeHH
Confidence 76 88999999999999999998854
No 201
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.49 E-value=0.00013 Score=76.08 Aligned_cols=114 Identities=13% Similarity=0.151 Sum_probs=72.6
Q ss_pred eEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhH----HhhccchhhhcccCCCCCC--CCCccchhhccCccccc
Q 007645 444 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSV----IYDRGLIGVYHDWCEPFST--YPRTYDLIHVSGIESLI 516 (595)
Q Consensus 444 nvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~----i~eRGlig~~~~wce~f~t--yprtyDl~H~~~~~s~~ 516 (595)
+|||+|||.|.++.+|.+... .|+-.|.. .-+.. +-+.|+ . ++--+.-+.. .+..||+|-+..+|...
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l-~-v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENL-N-IRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEechhcccccCCccEEEEcchhhhC
Confidence 799999999999999877542 44445543 33333 334555 1 1111112222 25889999988887643
Q ss_pred cCCCCCCCCCChhhhHHhhcccccCCcEEEEe---CCh-----------HHHHHHHHhHhccCceeEEe
Q 007645 517 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR---DSP-----------EVIDKVSRIANTVRWTAAVH 571 (595)
Q Consensus 517 ~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r---d~~-----------~~~~~~~~~~~~~~W~~~~~ 571 (595)
++-.+..++-+|-|.|+|||++++- +.. ---++++++.+. |++...
T Consensus 198 -------~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 198 -------NRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred -------CHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 3346778999999999999996552 111 113456666665 887765
No 202
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=97.46 E-value=7.9e-05 Score=76.81 Aligned_cols=98 Identities=15% Similarity=0.219 Sum_probs=61.7
Q ss_pred eeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccc----hhhhcccCCCCC-CCC-CccchhhccCccc
Q 007645 442 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL----IGVYHDWCEPFS-TYP-RTYDLIHVSGIES 514 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGl----ig~~~~wce~f~-typ-rtyDl~H~~~~~s 514 (595)
-..|||+|||.|+++..|.... -..|+-.|-. +.+..+-+|-- +-.. -+.... .|| .+||+|++..++-
T Consensus 53 ~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~--~~D~~~~~~~~~~FD~V~s~~~l~ 128 (263)
T PTZ00098 53 NSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFE--ANDILKKDFPENTFDMIYSRDAIL 128 (263)
T ss_pred CCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEE--ECCcccCCCCCCCeEEEEEhhhHH
Confidence 3579999999999988885431 1234444433 45555544421 1111 111111 255 7999999877665
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 550 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~ 550 (595)
++ ..-+...+|-|+-|+|+|||.+++.|-
T Consensus 129 h~-------~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 129 HL-------SYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred hC-------CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 43 122566799999999999999999753
No 203
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.46 E-value=0.0031 Score=67.62 Aligned_cols=98 Identities=18% Similarity=0.155 Sum_probs=59.0
Q ss_pred eEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHH----hhccchhhhcccCCCCCCCCCccchhhccCcccccc
Q 007645 444 NIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVI----YDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIK 517 (595)
Q Consensus 444 nvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i----~eRGlig~~~~wce~f~typrtyDl~H~~~~~s~~~ 517 (595)
.|+|+|||.|.++.+|.+. |-. .|+-.|.. .-|..+ -+.|+-+.++ +...++.-+..||+|-++-.|-.-.
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~--~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKI--RLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCCc
Confidence 5999999999999988764 311 12223322 222211 1223333222 2334444468999999887663210
Q ss_pred CCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 518 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 518 ~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
....-..+.++-++-|.|+|||.++|-
T Consensus 276 ----~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 276 ----QTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred ----cccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 011223568899999999999999874
No 204
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.44 E-value=0.00038 Score=67.19 Aligned_cols=109 Identities=19% Similarity=0.195 Sum_probs=63.0
Q ss_pred HHHHHhhcc-ccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEccc---------c
Q 007645 187 IDKLKQYIP-ITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGT---------R 256 (595)
Q Consensus 187 i~~L~~~l~-~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~---------~ 256 (595)
+.++.+... ...+...+|||+||++|.|+..+++++.....+.++|+.+.. ....+...++|. .
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~------~~~~~~~i~~d~~~~~~~~~i~ 82 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD------PLQNVSFIQGDITNPENIKDIR 82 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG------S-TTEEBTTGGGEEEEHSHHGG
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc------cccceeeeecccchhhHHHhhh
Confidence 445555555 444456799999999999999999997556788888886541 001122222221 1
Q ss_pred c-CCCCCCceeEEEEcCCCcccc----cCH-------HHHHHHHHhhcCCCcEEEEEc
Q 007645 257 R-LPFPAFSFDIVHCSRCLIPFT----AYN-------ATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 257 ~-LPfpd~sFDlV~~s~vL~h~~----~d~-------~~~L~Ei~RvLRPGG~lvls~ 302 (595)
. ++-..+.||+|+|-.+. ... .+. ...+.-+...|+|||.+++-.
T Consensus 83 ~~~~~~~~~~dlv~~D~~~-~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 83 KLLPESGEKFDLVLSDMAP-NVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp GSHGTTTCSESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred hhccccccCcceecccccc-CCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 1 11112689999996532 111 111 133455567799999999876
No 205
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=97.44 E-value=0.00013 Score=74.59 Aligned_cols=99 Identities=17% Similarity=0.224 Sum_probs=66.2
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhccchhhhcccCCCCCCCCCccchhhccCccc
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIES 514 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~wce~f~typrtyDl~H~~~~~s 514 (595)
+....-..|||+|||.|.++.+|... |- ..|+=.|-. ..+..+-++++-=+..|- +.+. ...+||+|+++.+|-
T Consensus 25 l~~~~~~~vLDlGcG~G~~~~~l~~~~p~--~~v~gvD~s~~~~~~a~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~ 100 (255)
T PRK14103 25 VGAERARRVVDLGCGPGNLTRYLARRWPG--AVIEALDSSPEMVAAARERGVDARTGDV-RDWK-PKPDTDVVVSNAALQ 100 (255)
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHhcCCcEEEcCh-hhCC-CCCCceEEEEehhhh
Confidence 44333478999999999999988654 21 133444433 667777777632111221 2221 126899999988886
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
+.. +...+|-|+-|+|+|||++++.
T Consensus 101 ~~~---------d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 101 WVP---------EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred hCC---------CHHHHHHHHHHhCCCCcEEEEE
Confidence 442 3467899999999999999986
No 206
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.44 E-value=0.00033 Score=72.00 Aligned_cols=144 Identities=18% Similarity=0.189 Sum_probs=83.7
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHH--------------------cCC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE--------------------RGI 246 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~e--------------------rg~ 246 (595)
++.+.+.+....-++.++||||||.-..-..-+.. ..-+|+..|.++..++..++ .|.
T Consensus 43 L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~--~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~ 120 (256)
T PF01234_consen 43 LKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACE--WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGK 120 (256)
T ss_dssp HHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGG--TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTS
T ss_pred HHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHH--hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCC
Confidence 44555555544334669999999986543222222 34567777877766542210 010
Q ss_pred --------------CeEEEEcccccC-CCCC-----CceeEEEEcCCCcccccCHH---HHHHHHHhhcCCCcEEEEEcC
Q 007645 247 --------------PAFVAMLGTRRL-PFPA-----FSFDIVHCSRCLIPFTAYNA---TYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 247 --------------~~~~~~~d~~~L-Pfpd-----~sFDlV~~s~vL~h~~~d~~---~~L~Ei~RvLRPGG~lvls~p 303 (595)
-..++..|..+. |+.. +.||+|++++||+....+.+ .+++.+.++|||||.|++.+-
T Consensus 121 ~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 121 REKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp SSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 012444554433 3433 35999999999988776665 779999999999999999764
Q ss_pred -CC-CCCCCc--h-----hHHHHHHHHHHcCcEEEEee
Q 007645 304 -PV-QWPKQD--K-----EWADLQAVARALCYELIAVD 332 (595)
Q Consensus 304 -~~-~~~~~~--~-----~w~~l~~la~~~~w~~v~~~ 332 (595)
.. .|.... . .-+.+++.+++.++.+...+
T Consensus 201 l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 201 LGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp SS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred cCceeEEECCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 11 111101 0 13457888888899877654
No 207
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.44 E-value=0.002 Score=63.35 Aligned_cols=114 Identities=14% Similarity=0.044 Sum_probs=72.9
Q ss_pred HHHHHHHHhhccc-cCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccc
Q 007645 184 DKYIDKLKQYIPI-TGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTR 256 (595)
Q Consensus 184 ~~yi~~L~~~l~~-~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~ 256 (595)
+...+.+.+.+.. ..+ .++||++||+|.++..++++|.. .++.+|.++.+++.++++ +. .+.+...|+.
T Consensus 34 ~~vrea~f~~l~~~~~g--~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~ 109 (189)
T TIGR00095 34 RVVRELFFNILRPEIQG--AHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSAL 109 (189)
T ss_pred HHHHHHHHHHHHHhcCC--CEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHH
Confidence 3344455555432 123 38999999999999999999753 678889999999888765 33 3567777763
Q ss_pred c-CC-C-CC-CceeEEEEcCCCcccccCHHHHHHHH--HhhcCCCcEEEEEcC
Q 007645 257 R-LP-F-PA-FSFDIVHCSRCLIPFTAYNATYLIEV--DRLLRPGGYLVISGP 303 (595)
Q Consensus 257 ~-LP-f-pd-~sFDlV~~s~vL~h~~~d~~~~L~Ei--~RvLRPGG~lvls~p 303 (595)
+ +. + .. ..||+|+.---+.. ......+..+ ..+|+++|.+++..+
T Consensus 110 ~~l~~~~~~~~~~dvv~~DPPy~~--~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 110 RALKFLAKKPTFDNVIYLDPPFFN--GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred HHHHHhhccCCCceEEEECcCCCC--CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 3 22 1 12 24788887543321 1233444444 346889998888653
No 208
>PRK00536 speE spermidine synthase; Provisional
Probab=97.43 E-value=0.0013 Score=68.01 Aligned_cols=106 Identities=9% Similarity=0.042 Sum_probs=75.3
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc---------CCCeEEEEcccc
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER---------GIPAFVAMLGTR 256 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er---------g~~~~~~~~d~~ 256 (595)
|-+.|....-...+..++||=||.|.|..++++++..- +++-+|+++..++.+++. .+++.+... ..
T Consensus 58 YHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~ 133 (262)
T PRK00536 58 ESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL 133 (262)
T ss_pred HHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh
Confidence 33444433323345567999999999999999999852 788899999999999884 223333331 11
Q ss_pred cCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 257 RLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 257 ~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.-..++||+|++-.. ....+.+.+.|.|+|||.++....
T Consensus 134 --~~~~~~fDVIIvDs~------~~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 134 --DLDIKKYDLIICLQE------PDIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred --hccCCcCCEEEEcCC------CChHHHHHHHHhcCCCcEEEECCC
Confidence 112368999997642 235678999999999999999754
No 209
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.41 E-value=0.0017 Score=67.48 Aligned_cols=110 Identities=22% Similarity=0.214 Sum_probs=68.5
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHc---CCCeEEE--Ecc--cccC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE-NILTLSFAPRDSHKAQIQFALER---GIPAFVA--MLG--TRRL 258 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~er---g~~~~~~--~~d--~~~L 258 (595)
+.++...++... .++|||+|||+|.......+. + ...+++.+|.|+.|++.++.- ....... ... ....
T Consensus 22 l~El~~r~p~f~--P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 98 (274)
T PF09243_consen 22 LSELRKRLPDFR--PRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFL 98 (274)
T ss_pred HHHHHHhCcCCC--CceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccc
Confidence 455555555443 459999999999766655544 2 345788899999999987653 2111100 001 1122
Q ss_pred CCCCCceeEEEEcCCCcccccC-HHHHHHHHHhhcCCCcEEEEEcC
Q 007645 259 PFPAFSFDIVHCSRCLIPFTAY-NATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 259 Pfpd~sFDlV~~s~vL~h~~~d-~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++. ..|+|+++++|..+.+. ...+++.+.+.+.+ +++|++|
T Consensus 99 ~~~--~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEp 140 (274)
T PF09243_consen 99 PFP--PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEP 140 (274)
T ss_pred cCC--CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcC
Confidence 332 23999999999888741 12455555555544 9999987
No 210
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.40 E-value=0.00029 Score=72.81 Aligned_cols=122 Identities=15% Similarity=0.167 Sum_probs=68.2
Q ss_pred ccChhhhhhhhhh-----HHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCC--CeEEEEeccCCCC-CchhH
Q 007645 409 KNGYDVFEADSRR-----WRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSV 480 (595)
Q Consensus 409 ~~~~~~f~~d~~~-----w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~-~~l~~ 480 (595)
|.+.++|+.-... +....+...+.|...+.. .-.+|||+|||.|.+++.|.+. +.=..+|+-.|-. +.+..
T Consensus 49 ~d~~~~~~ar~~fl~~g~y~~l~~~i~~~l~~~l~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~ 127 (272)
T PRK11088 49 GDNKEMMQARRAFLDAGHYQPLRDAVANLLAERLDE-KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKY 127 (272)
T ss_pred CcCHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcCC-CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHH
Confidence 5566666644333 222222222223322332 3356999999999999988542 1101245555544 67777
Q ss_pred Hhhccc-hhh-hcccCCCCCCCC-CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 481 IYDRGL-IGV-YHDWCEPFSTYP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 481 i~eRGl-ig~-~~~wce~f~typ-rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
+-+|.- +.. ..|-. .++ ++ .+||+|.+. |+. ..+-|+.|+|+|||++|+..
T Consensus 128 A~~~~~~~~~~~~d~~-~lp-~~~~sfD~I~~~--~~~--------------~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 128 AAKRYPQVTFCVASSH-RLP-FADQSLDAIIRI--YAP--------------CKAEELARVVKPGGIVITVT 181 (272)
T ss_pred HHHhCCCCeEEEeecc-cCC-CcCCceeEEEEe--cCC--------------CCHHHHHhhccCCCEEEEEe
Confidence 766531 111 11111 122 33 799999742 221 14579999999999999873
No 211
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.38 E-value=0.00017 Score=78.40 Aligned_cols=94 Identities=17% Similarity=0.265 Sum_probs=63.9
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCC-CCchhHHhhcc--chhhhcccCCCCCCCCCccchhhccCccccccC
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARK-SSTLSVIYDRG--LIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKN 518 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~-~~~l~~i~eRG--lig~~~~wce~f~typrtyDl~H~~~~~s~~~~ 518 (595)
..|||+|||.|+++..+.+. .+ .|+-.|- +.++..+-+|. +- .+--+..+...+.+||+|.+..+|.+.
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l~--v~~~~~D~~~l~~~fD~Ivs~~~~ehv-- 241 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGLP--VEIRLQDYRDLNGQFDRIVSVGMFEHV-- 241 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccCe--EEEEECchhhcCCCCCEEEEeCchhhC--
Confidence 58999999999999888653 33 3444443 36777666653 21 111111222235789999998888754
Q ss_pred CCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 519 PGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 519 ~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
..-....++-++.|+|+|||.+++.
T Consensus 242 -----g~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 242 -----GPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred -----ChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 2234668999999999999999986
No 212
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.37 E-value=0.00053 Score=74.58 Aligned_cols=96 Identities=19% Similarity=0.205 Sum_probs=71.4
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC-eEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~-~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
.+|||++||+|.++..++.... ...++++|+++.+++.++++ ++. ..+...|+..+....+.||+|+..-
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 3799999999999999976521 34688999999999988765 443 4466677654321146799999753
Q ss_pred cccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 277 FTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 277 ~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
. ..+..++..+.+.+++||.++++..
T Consensus 134 ~-Gs~~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 134 F-GSPAPFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred C-CCcHHHHHHHHHHhcCCCEEEEEec
Confidence 2 2446788887888999999999854
No 213
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.0022 Score=62.33 Aligned_cols=122 Identities=15% Similarity=0.159 Sum_probs=80.4
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHH----HHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQF----ALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~----A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
...+||||||+|..+..|++......-....|+++.+.+. |+.++..+..++.|...- ...++.|+++-+.-...
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcCc
Confidence 4479999999999999998874344455677999988765 455666666666664322 22388999887654432
Q ss_pred ccc----------------C----HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEE
Q 007645 277 FTA----------------Y----NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELI 329 (595)
Q Consensus 277 ~~~----------------d----~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v 329 (595)
-.+ + .+.++..+..+|.|.|.|++..-..+.. +++-++.+..+|...
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p------~ei~k~l~~~g~~~~ 189 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKP------KEILKILEKKGYGVR 189 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCH------HHHHHHHhhccccee
Confidence 111 1 1256777888899999999987533332 234456666666543
No 214
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.36 E-value=0.0014 Score=72.98 Aligned_cols=121 Identities=15% Similarity=0.162 Sum_probs=79.7
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC-eEEEEcccccCC-CCCCceeEEE----E
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLP-FPAFSFDIVH----C 270 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~-~~~~~~d~~~LP-fpd~sFDlV~----~ 270 (595)
..+|||++||.|.=+..+++.--....++++|+++..++..+++ |+. +.+...|...++ ...+.||.|+ |
T Consensus 114 g~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPC 193 (470)
T PRK11933 114 PQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPC 193 (470)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCC
Confidence 34999999999988888887622223688899999988777655 554 455666665543 2246799999 5
Q ss_pred cCC--Cc-------cccc--------CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHc
Q 007645 271 SRC--LI-------PFTA--------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARAL 324 (595)
Q Consensus 271 s~v--L~-------h~~~--------d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~ 324 (595)
+.. +. .|.. -...+|..+.+.|||||+++.++-.....+++ ..++.++++.
T Consensus 194 SG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE---~vV~~~L~~~ 261 (470)
T PRK11933 194 SGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQ---AVCLWLKETY 261 (470)
T ss_pred CCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHH---HHHHHHHHHC
Confidence 532 11 1110 11367899999999999999998644333222 3355566554
No 215
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.35 E-value=0.0024 Score=65.38 Aligned_cols=139 Identities=13% Similarity=0.131 Sum_probs=87.2
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc---------CCCeEEEEcc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER---------GIPAFVAMLG 254 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er---------g~~~~~~~~d 254 (595)
..|.+.+...........++||=||-|.|..+..+++.. ...+++.+|+++..++.|++. ..++.++..|
T Consensus 60 ~~y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~D 138 (246)
T PF01564_consen 60 FIYHEMLVHPPLLLHPNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGD 138 (246)
T ss_dssp HHHHHHHHHHHHHHSSST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEEST
T ss_pred HHHHHHHhhhHhhcCCCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhh
Confidence 445555544333333346699999999999999999874 234788899999999999864 2357788777
Q ss_pred cccC-CCCCC-ceeEEEEcCCCccccc----CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCc
Q 007645 255 TRRL-PFPAF-SFDIVHCSRCLIPFTA----YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCY 326 (595)
Q Consensus 255 ~~~L-Pfpd~-sFDlV~~s~vL~h~~~----d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w 326 (595)
.... .-..+ .||+|+.-..- .... ....+++.+.+.|+|||.+++....... .......+.+.+++...
T Consensus 139 g~~~l~~~~~~~yDvIi~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~--~~~~~~~i~~tl~~~F~ 213 (246)
T PF01564_consen 139 GRKFLKETQEEKYDVIIVDLTD-PDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFL--HPELFKSILKTLRSVFP 213 (246)
T ss_dssp HHHHHHTSSST-EEEEEEESSS-TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTT--THHHHHHHHHHHHTTSS
T ss_pred hHHHHHhccCCcccEEEEeCCC-CCCCcccccCHHHHHHHHhhcCCCcEEEEEccCccc--chHHHHHHHHHHHHhCC
Confidence 5332 11223 89999974322 1111 1258899999999999999997632111 12223445555555444
No 216
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.35 E-value=0.00018 Score=76.34 Aligned_cols=95 Identities=16% Similarity=0.212 Sum_probs=57.2
Q ss_pred eeEEecccchhHHHhhhcCCC-eEEEEeccCCCC-CchhHHhhccc-----hhhhcccCCCCCCCCCccchhhccCcccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLSVIYDRGL-----IGVYHDWCEPFSTYPRTYDLIHVSGIESL 515 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~-vwvmnv~p~~~~-~~l~~i~eRGl-----ig~~~~wce~f~typrtyDl~H~~~~~s~ 515 (595)
+.|+|+|||.|.|+..|.... -.|.-|=|.... .+...+ .+.+ |-..+.=-|.++. +.+||+|++.+++-+
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~-~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAV-RKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHH-HHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhc
Confidence 689999999999998886542 222222222110 111111 1110 1011000122333 689999999888753
Q ss_pred ccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 516 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 516 ~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
. -+...+|-++-|.|+|||.+|+.
T Consensus 202 ~---------~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 202 R---------RSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred c---------CCHHHHHHHHHHhcCCCcEEEEE
Confidence 3 45678999999999999999985
No 217
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.33 E-value=0.00062 Score=65.70 Aligned_cols=123 Identities=11% Similarity=0.082 Sum_probs=73.6
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhh----ccchh--hhcccCCCCCCCCCccchhhccCcccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGLIG--VYHDWCEPFSTYPRTYDLIHVSGIESL 515 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGlig--~~~~wce~f~typrtyDl~H~~~~~s~ 515 (595)
++|||+|||.|.++.++....- .|+-.|-. ..+..+-+ .|+-. +..|+.+. .+.+||+|-++-.|..
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~---~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG---VRGKFDVILFNPPYLP 94 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc---cCCcccEEEECCCCCC
Confidence 4699999999999988876532 34444432 33332222 12211 12233332 2469999988876643
Q ss_pred ccCCCC------------CCCCCChhhhHHhhcccccCCcEEEEeCChHH-HHHHHHhHhccCceeEEe
Q 007645 516 IKNPGS------------NKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEV-IDKVSRIANTVRWTAAVH 571 (595)
Q Consensus 516 ~~~~~~------------~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~~-~~~~~~~~~~~~W~~~~~ 571 (595)
..+... ...+..++.+|-|+.|+|+|||.+++.+.... ..++.++++..-++....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEE
Confidence 321100 01123367889999999999999998754433 556666666666766655
No 218
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=97.33 E-value=0.00011 Score=72.51 Aligned_cols=93 Identities=17% Similarity=0.257 Sum_probs=60.8
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhH----Hhhccch---hhhcccCCCCCCCCCccchhhccCccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSV----IYDRGLI---GVYHDWCEPFSTYPRTYDLIHVSGIES 514 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~----i~eRGli---g~~~~wce~f~typrtyDl~H~~~~~s 514 (595)
-+|||+|||.|.++..|.+... +|.-.|-. ..+.. +-++|+- ....|..+ + .++.+||+|-+..+|-
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~I~~~~~~~ 106 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-L-TFDGEYDFILSTVVLM 106 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-C-CcCCCcCEEEEecchh
Confidence 4799999999999999987631 44444443 33332 2334442 12233322 2 2357899999887764
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEE
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
.. +.-....++-+|-|.|+|||++++
T Consensus 107 ~~-------~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 107 FL-------EAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hC-------CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 32 334567899999999999999654
No 219
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.31 E-value=0.0038 Score=65.20 Aligned_cols=105 Identities=13% Similarity=0.089 Sum_probs=76.1
Q ss_pred cCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---------CCeEEEEcccccC-CCCCCcee
Q 007645 197 TGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---------IPAFVAMLGTRRL-PFPAFSFD 266 (595)
Q Consensus 197 ~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---------~~~~~~~~d~~~L-Pfpd~sFD 266 (595)
..+..++||-||-|.|..++.+++... ...++.+|+++..++.|++.- ..+.+...|.... .-..++||
T Consensus 73 ah~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fD 151 (282)
T COG0421 73 AHPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFD 151 (282)
T ss_pred hCCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCC
Confidence 344456999999999999999999853 457888899999999999862 2345666664333 21234899
Q ss_pred EEEEcCCCccccc----CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 267 IVHCSRCLIPFTA----YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 267 lV~~s~vL~h~~~----d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+|++-..= +... ....+++.+.|.|+++|.++...-
T Consensus 152 vIi~D~td-p~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~ 191 (282)
T COG0421 152 VIIVDSTD-PVGPAEALFTEEFYEGCRRALKEDGIFVAQAG 191 (282)
T ss_pred EEEEcCCC-CCCcccccCCHHHHHHHHHhcCCCcEEEEecC
Confidence 99974321 2110 125899999999999999999843
No 220
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.0003 Score=66.96 Aligned_cols=134 Identities=17% Similarity=0.321 Sum_probs=91.2
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc-CCC-------eEEEEcc--cccCCCCCCceeEEEEc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER-GIP-------AFVAMLG--TRRLPFPAFSFDIVHCS 271 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er-g~~-------~~~~~~d--~~~LPfpd~sFDlV~~s 271 (595)
++||++|.|.-.++..|.....+..++.-.|-++..++..++- ..+ ....... ..+.....++||.|+|+
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaA 110 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILAA 110 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEec
Confidence 5899999998777777776656666777778888777655432 111 1011111 11122344689999999
Q ss_pred CCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEeec-ceeEeecc
Q 007645 272 RCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDG-NTVIWKKP 341 (595)
Q Consensus 272 ~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~~~-~~~iw~K~ 341 (595)
.|+ -+.+....++.-|.+.|||.|..++..| .+......+.+.+...+|.....+. +..||++-
T Consensus 111 DCl-FfdE~h~sLvdtIk~lL~p~g~Al~fsP-----RRg~sL~kF~de~~~~gf~v~l~enyde~iwqrh 175 (201)
T KOG3201|consen 111 DCL-FFDEHHESLVDTIKSLLRPSGRALLFSP-----RRGQSLQKFLDEVGTVGFTVCLEENYDEAIWQRH 175 (201)
T ss_pred cch-hHHHHHHHHHHHHHHHhCcccceeEecC-----cccchHHHHHHHHHhceeEEEecccHhHHHHHHH
Confidence 998 5555667889999999999999988877 2233355677777888888776654 45678763
No 221
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=97.29 E-value=0.00034 Score=69.93 Aligned_cols=93 Identities=19% Similarity=0.304 Sum_probs=57.3
Q ss_pred eeEEecccchhHHHhhhcCC-----CeEEEEeccCCCCCchhHHhh----ccc--hhhhcccCCCCCCCC-Cccchhhcc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-----PVWVMNVVPARKSSTLSVIYD----RGL--IGVYHDWCEPFSTYP-RTYDLIHVS 510 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-----~vwvmnv~p~~~~~~l~~i~e----RGl--ig~~~~wce~f~typ-rtyDl~H~~ 510 (595)
.+|||+|||.|.++..|.+. .|..+-+.| +.+..+-+ .++ +-.++.=.+.++ +| .+||+|++.
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~----~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~ 121 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSE----NMLSVGRQKVKDAGLHNVELVHGNAMELP-FDDNSFDYVTIG 121 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCH----HHHHHHHHHHHhcCCCceEEEEechhcCC-CCCCCccEEEEe
Confidence 57999999999999888542 233322211 33333222 222 111211112222 44 799999987
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
..+.... +...+|-|+-|+|+|||.+++.+
T Consensus 122 ~~l~~~~---------~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 122 FGLRNVP---------DYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred cccccCC---------CHHHHHHHHHHHcCcCeEEEEEE
Confidence 6665332 34578999999999999999865
No 222
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.28 E-value=0.00093 Score=70.11 Aligned_cols=119 Identities=17% Similarity=0.201 Sum_probs=75.8
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhc------CCceEEEEeecCcHHHHHHHHHc----CCC---eEE
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE------NILTLSFAPRDSHKAQIQFALER----GIP---AFV 250 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~------gv~~~~v~~vD~s~~~l~~A~er----g~~---~~~ 250 (595)
....+.+.+++....+. +|||-.||+|.|...+.+. ......+.|.|+++.++..|+.+ +.. ..+
T Consensus 32 ~~i~~l~~~~~~~~~~~--~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i 109 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKGD--SVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINI 109 (311)
T ss_dssp HHHHHHHHHHHTT-TTE--EEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEE
T ss_pred HHHHHHHHhhhhccccc--eeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccc
Confidence 44556666666544433 8999999999998887763 12346889999999998887644 222 235
Q ss_pred EEcccccCCC-C-CCceeEEEEcCCCccc--c-----c-------------CHHHHHHHHHhhcCCCcEEEEEcCC
Q 007645 251 AMLGTRRLPF-P-AFSFDIVHCSRCLIPF--T-----A-------------YNATYLIEVDRLLRPGGYLVISGPP 304 (595)
Q Consensus 251 ~~~d~~~LPf-p-d~sFDlV~~s~vL~h~--~-----~-------------d~~~~L~Ei~RvLRPGG~lvls~p~ 304 (595)
...|....+. . .+.||+|+++--+... . . ..-.++..+.+.|++||++++..|.
T Consensus 110 ~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 110 IQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp EES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred cccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 5666433332 2 4789999997655433 1 0 0125788899999999999998873
No 223
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.27 E-value=0.00021 Score=69.68 Aligned_cols=112 Identities=14% Similarity=0.224 Sum_probs=67.7
Q ss_pred eeEEecccchhHHHhhhcC-CCeEEEEeccCCCC-CchhHH----hhccc--hhhhc-ccCCCCCCCCCccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTS-DPVWVMNVVPARKS-STLSVI----YDRGL--IGVYH-DWCEPFSTYPRTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~-~~vwvmnv~p~~~~-~~l~~i----~eRGl--ig~~~-~wce~f~typrtyDl~H~~~~~ 513 (595)
.+|+|+|||.|.++..|.. .+- ..|+-.|.. +.+.++ -+.|+ +-+++ |. +.+ ....+||+|-+.. +
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~~--~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~-~~~-~~~~~fD~I~s~~-~ 118 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARPE--LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRA-EDF-QHEEQFDVITSRA-L 118 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecch-hhc-cccCCccEEEehh-h
Confidence 5899999999987765531 111 223333433 333222 22343 11111 11 112 1247999997654 1
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCChHHHHHHHHhHhccC-ceeEEe
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVR-WTAAVH 571 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~~~~~-W~~~~~ 571 (595)
..+.+++-++.|+|+|||.+++........++..+.+++| |.....
T Consensus 119 ------------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~ 165 (181)
T TIGR00138 119 ------------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPL 165 (181)
T ss_pred ------------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEe
Confidence 3456788889999999999999987777788888776654 444433
No 224
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.24 E-value=0.0005 Score=71.82 Aligned_cols=114 Identities=12% Similarity=0.091 Sum_probs=67.9
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchhhhcccCCCCCCC-CCccchhhccCccccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFSTY-PRTYDLIHVSGIESLI 516 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~wce~f~ty-prtyDl~H~~~~~s~~ 516 (595)
.+|||+|||.|.++.++..... -.|+-.|-. ..+..+.++ |+-..+..-+...... +..||+|.|+.+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~-- 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE-- 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH--
Confidence 6899999999998777655432 133444433 444444333 2211122222212223 36899999865433
Q ss_pred cCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh-HHHHHHHHhHhccCceeEEe
Q 007645 517 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-EVIDKVSRIANTVRWTAAVH 571 (595)
Q Consensus 517 ~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~-~~~~~~~~~~~~~~W~~~~~ 571 (595)
.+..++-++-|+|+|||++|++.-. +-.+++.+..++- |+....
T Consensus 237 ----------~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 237 ----------VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred ----------HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence 2346888999999999999998532 3345556655555 765544
No 225
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.24 E-value=0.00041 Score=68.78 Aligned_cols=96 Identities=18% Similarity=0.177 Sum_probs=59.2
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc---chhhhcccCCCCCCCCCccchhhccCccccccC
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG---LIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKN 518 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG---lig~~~~wce~f~typrtyDl~H~~~~~s~~~~ 518 (595)
..|||+|||.|.|...|...-- .-.|+-.|.. ..+..+-++. +.-+..|. +.++..+.+||+|.+..++...
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~vi~~~~l~~~-- 111 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDA-EKLPLEDSSFDLIVSNLALQWC-- 111 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecch-hhCCCCCCceeEEEEhhhhhhc--
Confidence 5799999999999998865310 0112222222 3333333332 11111111 2233334889999998887643
Q ss_pred CCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 519 PGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 519 ~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.+...+|-++.|+|+|||.+++..
T Consensus 112 -------~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 112 -------DDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred -------cCHHHHHHHHHHHcCCCcEEEEEe
Confidence 346779999999999999999863
No 226
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=97.23 E-value=0.0005 Score=73.10 Aligned_cols=95 Identities=12% Similarity=0.184 Sum_probs=65.9
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc----chhhhcccC---CCCCCCCCccchhhccCccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG----LIGVYHDWC---EPFSTYPRTYDLIHVSGIES 514 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG----lig~~~~wc---e~f~typrtyDl~H~~~~~s 514 (595)
..|||+|||.|.|+..|.... .+|+-.|.. ..+.++-++. +..-+.-.| |.++..+.+||+|=+..++.
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 379999999999998887643 245555655 5666665442 211111112 33333347999999988888
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
+.. +.+.+|-|+-|+|+|||.+++.+
T Consensus 210 Hv~---------d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 210 HVA---------NPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred hcC---------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 663 45789999999999999999974
No 227
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.21 E-value=0.00032 Score=69.38 Aligned_cols=127 Identities=13% Similarity=0.129 Sum_probs=74.6
Q ss_pred eeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhh----ccchh---hhcccCCCCCC-C-CCccchhhcc
Q 007645 442 IRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYD----RGLIG---VYHDWCEPFST-Y-PRTYDLIHVS 510 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGlig---~~~~wce~f~t-y-prtyDl~H~~ 510 (595)
-.+|||+|||.|.++..|... |- -+|+-.|-. ..+..+-+ .|+-. +..|..+.++. + +.+||+|-+.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~--~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPD--INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCC--ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 478999999999998888543 21 123333322 33332221 23211 11122123332 4 3789999764
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe-CChHHHHHHHHhHhccCceeEEe
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIANTVRWTAAVH 571 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r-d~~~~~~~~~~~~~~~~W~~~~~ 571 (595)
... .|........+.....+|-|+.|+|+|||.+++. +.......+.+.+..--|.+.+.
T Consensus 119 ~~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~~ 179 (202)
T PRK00121 119 FPD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVSE 179 (202)
T ss_pred CCC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccccc
Confidence 332 2221111223344678999999999999999996 67777777777776666776643
No 228
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.20 E-value=0.00021 Score=73.01 Aligned_cols=93 Identities=16% Similarity=0.157 Sum_probs=63.2
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchhhh---c-ccCCCCCCC-CCccchhhccCc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIGVY---H-DWCEPFSTY-PRTYDLIHVSGI 512 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~---~-~wce~f~ty-prtyDl~H~~~~ 512 (595)
..|||+|||.|.++..|.... -+|+-.|-. ..+..+-++ |+..-+ + |.. .+..+ +.+||+|.+..+
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~-~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQ-DIAQHLETPVDLILFHAV 121 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHH-HHhhhcCCCCCEEEehhH
Confidence 589999999999999997764 245555544 555554433 432211 1 111 12222 489999999988
Q ss_pred cccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 513 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 513 ~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
+.+.. +...+|-|+-|+|+|||.+++-
T Consensus 122 l~~~~---------~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 122 LEWVA---------DPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHhhC---------CHHHHHHHHHHHcCCCeEEEEE
Confidence 87553 3457899999999999999874
No 229
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.18 E-value=0.00015 Score=63.63 Aligned_cols=98 Identities=20% Similarity=0.286 Sum_probs=59.4
Q ss_pred eeEEecccchhHHHhhhcC--CCeEEEEeccCCCC-CchhHHhhc----cchhhhcccCCCC---CCCCCccchhhccC-
Q 007645 443 RNIMDMNAFFGGFAAALTS--DPVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPF---STYPRTYDLIHVSG- 511 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~--~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~wce~f---~typrtyDl~H~~~- 511 (595)
..|||+|||.|.++.+|.+ ...= |+-.|-. ..+..+-+| ++-.-++=-+..+ ...+..||+|.+..
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 79 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGAR---VVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGF 79 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSE---EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSG
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCE---EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCC
Confidence 4689999999999999987 3332 2333332 344433332 3322222122233 33455699999999
Q ss_pred ccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 512 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 512 ~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.+..+. +.-....+|=++-+.|||||.++|++
T Consensus 80 ~~~~~~------~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLL------PLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCC------HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccc------chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 222222 11234467888999999999999975
No 230
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=97.18 E-value=0.00058 Score=69.59 Aligned_cols=116 Identities=17% Similarity=0.257 Sum_probs=68.3
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhcc-----chhhhcccCCCCCCCCCccchhhc
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRG-----LIGVYHDWCEPFSTYPRTYDLIHV 509 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eRG-----lig~~~~wce~f~typrtyDl~H~ 509 (595)
+....-.+|+|+|||.|.++..|... |- -+|+=.|-. .-+..+-++- +.+-+.+| . .+.+||+|++
T Consensus 27 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~--~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~----~-~~~~fD~v~~ 99 (258)
T PRK01683 27 VPLENPRYVVDLGCGPGNSTELLVERWPA--ARITGIDSSPAMLAEARSRLPDCQFVEADIASW----Q-PPQALDLIFA 99 (258)
T ss_pred CCCcCCCEEEEEcccCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhCCCCeEEECchhcc----C-CCCCccEEEE
Confidence 33344578999999999999888643 11 123333332 3333333331 11212112 1 2369999999
Q ss_pred cCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC--Ch--HHHHHHHHhHhccCcee
Q 007645 510 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD--SP--EVIDKVSRIANTVRWTA 568 (595)
Q Consensus 510 ~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd--~~--~~~~~~~~~~~~~~W~~ 568 (595)
+.+|.... +...+|-+|-|+|+|||.+++.- .. .....+++++....|..
T Consensus 100 ~~~l~~~~---------d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 153 (258)
T PRK01683 100 NASLQWLP---------DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQ 153 (258)
T ss_pred ccChhhCC---------CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHH
Confidence 98886432 35679999999999999999862 11 11223445555555653
No 231
>PRK14968 putative methyltransferase; Provisional
Probab=97.18 E-value=0.00073 Score=64.84 Aligned_cols=141 Identities=17% Similarity=0.175 Sum_probs=82.0
Q ss_pred eeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHh---------hccchhhhcccCCCCCCCCCccchhhccC
Q 007645 442 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIY---------DRGLIGVYHDWCEPFSTYPRTYDLIHVSG 511 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~---------eRGlig~~~~wce~f~typrtyDl~H~~~ 511 (595)
-..|||+|||.|.++..|.... -+|.-.|-. +.+..+- +||+.-.-+|+.+.+.. .+||+|=++.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~d~vi~n~ 98 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG--DKFDVILFNP 98 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc--cCceEEEECC
Confidence 3579999999999999997663 244444433 4444431 22243345666655533 4899985554
Q ss_pred ccccccCCC-------------CCCCCCChhhhHHhhcccccCCcEEEEeCC-hHHHHHHHHhHhccCceeEEeccCCCC
Q 007645 512 IESLIKNPG-------------SNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANTVRWTAAVHDKEPGS 577 (595)
Q Consensus 512 ~~s~~~~~~-------------~~~~~c~~~~~llEmdRiLRP~G~~i~rd~-~~~~~~~~~~~~~~~W~~~~~~~~~~~ 577 (595)
-|.... +. .......+..++-++.|+|+|||.+++--. ....+++.+++...-|+......+.-.
T Consensus 99 p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 177 (188)
T PRK14968 99 PYLPTE-EEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEEKFP 177 (188)
T ss_pred CcCCCC-chhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeecccC
Confidence 432210 00 001122356789999999999998876422 223456777787778876554333344
Q ss_pred CCCceEEEEEe
Q 007645 578 NGREKILVATK 588 (595)
Q Consensus 578 ~~~~~~l~~~K 588 (595)
.+.-.+++.+|
T Consensus 178 ~~~~~~~~~~~ 188 (188)
T PRK14968 178 FEELIVLELVK 188 (188)
T ss_pred CceEEEEEEeC
Confidence 44334444443
No 232
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.15 E-value=0.0008 Score=65.40 Aligned_cols=111 Identities=16% Similarity=0.160 Sum_probs=67.7
Q ss_pred eeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhh----ccchhhhcccCC-CCCCCCCccchhhccCccc
Q 007645 442 IRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYD----RGLIGVYHDWCE-PFSTYPRTYDLIHVSGIES 514 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGlig~~~~wce-~f~typrtyDl~H~~~~~s 514 (595)
-.+|+|+|||.|.++.++... |- -+|+-.|-. ..+..+-+ .|+-. +.-.+. ....++..||+|.+++..
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~~~~~~~~D~v~~~~~~- 107 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPS--LQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAPIELPGKADAIFIGGSG- 107 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCchhhcCcCCCEEEECCCc-
Confidence 358999999999998877542 21 123333332 33333322 23211 111111 122345789999865432
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC-ChHHHHHHHHhHhccCce
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-SPEVIDKVSRIANTVRWT 567 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd-~~~~~~~~~~~~~~~~W~ 567 (595)
..+..++-++-|.|+|||.+++.+ ..+..+++.++++...++
T Consensus 108 -----------~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 108 -----------GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVS 150 (187)
T ss_pred -----------cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence 346678889999999999999975 445567777787777774
No 233
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.14 E-value=0.0054 Score=65.52 Aligned_cols=149 Identities=15% Similarity=0.115 Sum_probs=103.2
Q ss_pred CCeeecCCCCCcccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc--
Q 007645 167 GPYFTFPGGGTMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER-- 244 (595)
Q Consensus 167 ~~~~~fp~~g~~F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er-- 244 (595)
+-.|.+.-...+|..+...-...+++.... |. +|||+=||.|.|+..++..+-.. +.++|+++.+++..+++
T Consensus 159 G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~~--GE--~V~DmFAGVGpfsi~~Ak~g~~~--V~A~diNP~A~~~L~eNi~ 232 (341)
T COG2520 159 GCRFKVDVAKVYFSPRLSTERARVAELVKE--GE--TVLDMFAGVGPFSIPIAKKGRPK--VYAIDINPDAVEYLKENIR 232 (341)
T ss_pred CEEEEEchHHeEECCCchHHHHHHHhhhcC--CC--EEEEccCCcccchhhhhhcCCce--EEEEecCHHHHHHHHHHHH
Confidence 344444444556666655555566665544 44 99999999999999999987642 78889999999888775
Q ss_pred --CCC--eEEEEcccccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHH
Q 007645 245 --GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAV 320 (595)
Q Consensus 245 --g~~--~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~l 320 (595)
+.. +....+|+...+...+.||-|++...- ....++..+.+.+++||.+-+-..-..-...+.....+...
T Consensus 233 LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~-----~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~ 307 (341)
T COG2520 233 LNKVEGRVEPILGDAREVAPELGVADRIIMGLPK-----SAHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSA 307 (341)
T ss_pred hcCccceeeEEeccHHHhhhccccCCEEEeCCCC-----cchhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHH
Confidence 332 557788887777655889999976422 44678889999999999998865411111111134567777
Q ss_pred HHHcCc
Q 007645 321 ARALCY 326 (595)
Q Consensus 321 a~~~~w 326 (595)
+.+++.
T Consensus 308 ~~~~~~ 313 (341)
T COG2520 308 ARKGGY 313 (341)
T ss_pred HhhccC
Confidence 777765
No 234
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.12 E-value=0.0005 Score=72.84 Aligned_cols=96 Identities=13% Similarity=0.096 Sum_probs=57.5
Q ss_pred eeEEecccchhHHHhhhcCCCe-EEEEeccCCCC-CchhHHhh----ccchhhhcccCCCCCCCCCccchhhccCccccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPV-WVMNVVPARKS-STLSVIYD----RGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLI 516 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~v-wvmnv~p~~~~-~~l~~i~e----RGlig~~~~wce~f~typrtyDl~H~~~~~s~~ 516 (595)
+.|+|+|||.|.++.++..... -|.-|=|...- .+...+-. .+-+....-=-|.++. +.+||+|-+.+++-++
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL~H~ 201 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVLYHR 201 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchhhcc
Confidence 7899999999999888765432 23333333211 12111110 0111111000011221 2589999999888644
Q ss_pred cCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 517 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 517 ~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
-+..+.|-|+-|+|||||.+|+.
T Consensus 202 ---------~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 202 ---------KSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred ---------CCHHHHHHHHHHhcCCCCEEEEE
Confidence 45678999999999999999985
No 235
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.11 E-value=0.0022 Score=62.79 Aligned_cols=130 Identities=19% Similarity=0.210 Sum_probs=80.7
Q ss_pred cCCeeecCCCCCcccccHHHHHHHHHhhcccc--CCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHH
Q 007645 166 SGPYFTFPGGGTMFADGADKYIDKLKQYIPIT--GGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE 243 (595)
Q Consensus 166 e~~~~~fp~~g~~F~~~a~~yi~~L~~~l~~~--~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~e 243 (595)
.+.....|.+.. ..+..+...+.+.+++... .+. ++||+-||+|.++.+.+++|.. .++-+|.+...++..++
T Consensus 9 kgr~l~~p~~~~-~RPT~drvrealFniL~~~~~~g~--~vLDLFaGSGalGlEALSRGA~--~v~fVE~~~~a~~~i~~ 83 (183)
T PF03602_consen 9 KGRKLKTPKGDN-TRPTTDRVREALFNILQPRNLEGA--RVLDLFAGSGALGLEALSRGAK--SVVFVEKNRKAIKIIKK 83 (183)
T ss_dssp TT-EEE-TT--T-S-SSSHHHHHHHHHHHHCH-HTT---EEEETT-TTSHHHHHHHHTT-S--EEEEEES-HHHHHHHHH
T ss_pred CCCEecCCCCCC-cCCCcHHHHHHHHHHhcccccCCC--eEEEcCCccCccHHHHHhcCCC--eEEEEECCHHHHHHHHH
Confidence 344555555432 2234456666777777643 444 8999999999999999999865 56668999998888776
Q ss_pred c----CCC--eEEEEcccc-cC---CCCCCceeEEEEcCCCcccccC--HHHHHHHHH--hhcCCCcEEEEEcC
Q 007645 244 R----GIP--AFVAMLGTR-RL---PFPAFSFDIVHCSRCLIPFTAY--NATYLIEVD--RLLRPGGYLVISGP 303 (595)
Q Consensus 244 r----g~~--~~~~~~d~~-~L---Pfpd~sFDlV~~s~vL~h~~~d--~~~~L~Ei~--RvLRPGG~lvls~p 303 (595)
+ +.. ..+...|.. .+ ......||+|++---. ... ...++..+. .+|+++|.+++...
T Consensus 84 N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY---~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 84 NLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPY---AKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--ST---TSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCc---ccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 6 332 566666632 22 1246889999987533 322 256677766 78999999999764
No 236
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.11 E-value=0.0021 Score=63.84 Aligned_cols=123 Identities=16% Similarity=0.159 Sum_probs=76.1
Q ss_pred cCCeeecCCCCCcccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc-
Q 007645 166 SGPYFTFPGGGTMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER- 244 (595)
Q Consensus 166 e~~~~~fp~~g~~F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er- 244 (595)
.+-.+.+.-...+|..+...-..++.+.+. . ..+|||+-||.|.|+..+++.+ ....+.++|+++.+++..+++
T Consensus 71 ~G~~f~~D~~kvyfs~rl~~Er~Ri~~~v~--~--~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni 145 (200)
T PF02475_consen 71 NGIRFKVDLSKVYFSPRLSTERRRIANLVK--P--GEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENI 145 (200)
T ss_dssp TTEEEEEETTTS---GGGHHHHHHHHTC----T--T-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHH
T ss_pred CCEEEEEccceEEEccccHHHHHHHHhcCC--c--ceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHH
Confidence 333444444556666666655666666533 2 3499999999999999999832 223678889999988876654
Q ss_pred ---CCC--eEEEEcccccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEE
Q 007645 245 ---GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLV 299 (595)
Q Consensus 245 ---g~~--~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lv 299 (595)
++. +....+|...+.- .+.||-|++.. +.....+|..+.+++|+||.+-
T Consensus 146 ~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l-----p~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 146 RLNKVENRIEVINGDAREFLP-EGKFDRVIMNL-----PESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHTT-TTTEEEEES-GGG----TT-EEEEEE-------TSSGGGGHHHHHHHEEEEEEEE
T ss_pred HHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC-----hHHHHHHHHHHHHHhcCCcEEE
Confidence 443 5677888877754 78999998764 2233468889999999999863
No 237
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.07 E-value=0.011 Score=58.01 Aligned_cols=92 Identities=25% Similarity=0.261 Sum_probs=64.6
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHH----HcCCC-eEEEEcccccCCCCCCceeEEEEcCCCccc
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFAL----ERGIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 277 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~----erg~~-~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~ 277 (595)
+++|||+|.|.=+.-|+=.. +...++-+|....-+.+.+ +-++. +.+....++. +....+||+|++..+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~--- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA--- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS---
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc---
Confidence 79999999995444443321 2236777898887665543 34665 7777777777 5566899999987644
Q ss_pred ccCHHHHHHHHHhhcCCCcEEEEE
Q 007645 278 TAYNATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 278 ~~d~~~~L~Ei~RvLRPGG~lvls 301 (595)
....++.-+.+.|++||.+++.
T Consensus 126 --~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 126 --PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp --SHHHHHHHHGGGEEEEEEEEEE
T ss_pred --CHHHHHHHHHHhcCCCCEEEEE
Confidence 5667888999999999999885
No 238
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.06 E-value=0.0021 Score=63.15 Aligned_cols=145 Identities=14% Similarity=0.182 Sum_probs=79.8
Q ss_pred cccChhhhhh--hhhhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcC---CCeEEEEeccCCCC-CchhHH
Q 007645 408 MKNGYDVFEA--DSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STLSVI 481 (595)
Q Consensus 408 ~~~~~~~f~~--d~~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~---~~vwvmnv~p~~~~-~~l~~i 481 (595)
+|+..+.|.. +...++..+..-. +. .++-..=-.|+|+|||.|.|+..+.. .. -+|+-.|.. ..+..+
T Consensus 8 ~~~~d~~~~~~~~~~~t~~~~r~~~--l~-~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~---~~v~avD~~~~~~~~a 81 (198)
T PRK00377 8 PGIPDEEFERDEEIPMTKEEIRALA--LS-KLRLRKGDMILDIGCGTGSVTVEASLLVGET---GKVYAVDKDEKAINLT 81 (198)
T ss_pred CCCChHHHccCCCCCCCHHHHHHHH--HH-HcCCCCcCEEEEeCCcCCHHHHHHHHHhCCC---CEEEEEECCHHHHHHH
Confidence 4667777876 3457777775421 11 12222224799999999999876532 11 123333332 333322
Q ss_pred hh----ccchhhh----cccCCCCCCCCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe-CChH
Q 007645 482 YD----RGLIGVY----HDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPE 552 (595)
Q Consensus 482 ~e----RGlig~~----~~wce~f~typrtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r-d~~~ 552 (595)
-+ -|+..-. .|..+..+..+..||+|...+ ....+..+|-++-|+|+|||.+++. -..+
T Consensus 82 ~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~------------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 149 (198)
T PRK00377 82 RRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG------------GSEKLKEIISASWEIIKKGGRIVIDAILLE 149 (198)
T ss_pred HHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC------------CcccHHHHHHHHHHHcCCCcEEEEEeecHH
Confidence 21 1321111 122222223335688876422 1235667899999999999999983 2345
Q ss_pred HHHHHHHhHhccCceeEE
Q 007645 553 VIDKVSRIANTVRWTAAV 570 (595)
Q Consensus 553 ~~~~~~~~~~~~~W~~~~ 570 (595)
.+.++...++...++..+
T Consensus 150 ~~~~~~~~l~~~g~~~~~ 167 (198)
T PRK00377 150 TVNNALSALENIGFNLEI 167 (198)
T ss_pred HHHHHHHHHHHcCCCeEE
Confidence 566777767666655443
No 239
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=97.06 E-value=0.00031 Score=71.35 Aligned_cols=113 Identities=23% Similarity=0.274 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc----ch--hhhcc
Q 007645 420 RRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG----LI--GVYHD 492 (595)
Q Consensus 420 ~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG----li--g~~~~ 492 (595)
..|++.+..... ...+ ..|||++||+|-.+..|...---.-.|+-.|-. +-|.++-+|- .. =....
T Consensus 33 ~~wr~~~~~~~~-----~~~g--~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~ 105 (233)
T PF01209_consen 33 RRWRRKLIKLLG-----LRPG--DRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQG 105 (233)
T ss_dssp ----SHHHHHHT-------S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-
T ss_pred HHHHHHHHhccC-----CCCC--CEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEc
Confidence 788887765332 2233 389999999999988886531111245555544 7777776653 21 11111
Q ss_pred cCCCCCCCC-CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 493 WCEPFSTYP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 493 wce~f~typ-rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
=.|.++ || .+||.|=++..+-.. .+....|-||=|+|||||.++|=|
T Consensus 106 da~~lp-~~d~sfD~v~~~fglrn~---------~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 106 DAEDLP-FPDNSFDAVTCSFGLRNF---------PDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp BTTB---S-TT-EEEEEEES-GGG----------SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHHHhc-CCCCceeEEEHHhhHHhh---------CCHHHHHHHHHHHcCCCeEEEEee
Confidence 123444 45 899999877766643 567889999999999999998853
No 240
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.06 E-value=0.00062 Score=70.33 Aligned_cols=135 Identities=14% Similarity=0.130 Sum_probs=83.2
Q ss_pred cChhhhhhhhhhHHHHHHHHHHHhhhccCCCCeeeEEecccchhH----HHhhhcCC----CeEEEEeccCCCC-CchhH
Q 007645 410 NGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGG----FAAALTSD----PVWVMNVVPARKS-STLSV 480 (595)
Q Consensus 410 ~~~~~f~~d~~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~----faa~l~~~----~vwvmnv~p~~~~-~~l~~ 480 (595)
++...|-.|...|..-.+.....|......+.--.|+|+|||.|- .|..|.+. +-|...|+-+|-. .-|..
T Consensus 68 i~~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~ 147 (264)
T smart00138 68 TNETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEK 147 (264)
T ss_pred cCCCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHH
Confidence 455678888899988776655433222222333579999999994 55555331 1244566666654 44543
Q ss_pred Hhh--------ccchh--------------------------hhcccCCCCCCCC-CccchhhccCccccccCCCCCCCC
Q 007645 481 IYD--------RGLIG--------------------------VYHDWCEPFSTYP-RTYDLIHVSGIESLIKNPGSNKNS 525 (595)
Q Consensus 481 i~e--------RGlig--------------------------~~~~wce~f~typ-rtyDl~H~~~~~s~~~~~~~~~~~ 525 (595)
+-+ |++.. ..||-.+. .+| ..||+|.|..+|..+. .
T Consensus 148 Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~--~~~~~~fD~I~crnvl~yf~-------~ 218 (264)
T smart00138 148 ARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAE--SPPLGDFDLIFCRNVLIYFD-------E 218 (264)
T ss_pred HHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCC--CCccCCCCEEEechhHHhCC-------H
Confidence 322 11110 12333332 133 7999999998887652 2
Q ss_pred CChhhhHHhhcccccCCcEEEEeCChHH
Q 007645 526 CSLVDLMVEMDRMLRPEGTVVVRDSPEV 553 (595)
Q Consensus 526 c~~~~~llEmdRiLRP~G~~i~rd~~~~ 553 (595)
=....++-++-|+|+|||++++-....+
T Consensus 219 ~~~~~~l~~l~~~L~pGG~L~lg~~E~~ 246 (264)
T smart00138 219 PTQRKLLNRFAEALKPGGYLFLGHSESL 246 (264)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEECcccC
Confidence 2344699999999999999999876543
No 241
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.02 E-value=0.0009 Score=67.42 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=73.3
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHh----hccchhhhccc-CCCCCCCC-CccchhhccCccc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIY----DRGLIGVYHDW-CEPFSTYP-RTYDLIHVSGIES 514 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~----eRGlig~~~~w-ce~f~typ-rtyDl~H~~~~~s 514 (595)
.+|+|+|||.|.|+.++... |- .+|+-.|-. ..+..+- ..|+-. .+-. +..+..++ ..||+|-++--|.
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPD--ARVTAVDISPEALAVARKNAARLGLDN-VTFLQSDWFEPLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhccCcCCceeEEEECCCCC
Confidence 47999999999999998764 21 134444432 3333222 234321 1111 12223344 7899999876655
Q ss_pred cccCCCCCCCCCC-----------------hhhhHHhhcccccCCcEEEEeCChHHHHHHHHhHhccCceeEE
Q 007645 515 LIKNPGSNKNSCS-----------------LVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAV 570 (595)
Q Consensus 515 ~~~~~~~~~~~c~-----------------~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~~~~~W~~~~ 570 (595)
...++........ ...++-++-|+|+|||.+++.......++++++++...++...
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v~ 238 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADVE 238 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCceE
Confidence 4321110000000 1356778999999999999986666667788888777775433
No 242
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.01 E-value=0.0046 Score=69.88 Aligned_cols=75 Identities=20% Similarity=0.136 Sum_probs=49.4
Q ss_pred cceEEEECCCCcHHHHHHhhcCC-------ceEEEEeecCcHHHHHHHHHc----C-CCeEEEEccccc--C---CCCCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENI-------LTLSFAPRDSHKAQIQFALER----G-IPAFVAMLGTRR--L---PFPAF 263 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv-------~~~~v~~vD~s~~~l~~A~er----g-~~~~~~~~d~~~--L---Pfpd~ 263 (595)
..+|||.|||+|.|...++.+.. ...++.+.|+++..+..++.+ + ....+...+... + .-..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 45899999999999998876521 236789999999999988765 1 222333222111 1 11125
Q ss_pred ceeEEEEcCCCc
Q 007645 264 SFDIVHCSRCLI 275 (595)
Q Consensus 264 sFDlV~~s~vL~ 275 (595)
.||+|+++--..
T Consensus 112 ~fD~IIgNPPy~ 123 (524)
T TIGR02987 112 LFDIVITNPPYG 123 (524)
T ss_pred cccEEEeCCCcc
Confidence 799999976543
No 243
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.98 E-value=0.0058 Score=64.94 Aligned_cols=112 Identities=14% Similarity=0.117 Sum_probs=71.1
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhc---CCceEEEEeecCcHHHHHHHHHcCC-----CeEE--EEcccc
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE---NILTLSFAPRDSHKAQIQFALERGI-----PAFV--AMLGTR 256 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~---gv~~~~v~~vD~s~~~l~~A~erg~-----~~~~--~~~d~~ 256 (595)
...|++.++ ...+++|+|||.|.=+..|++. ......+.|+|+|.++++.+.++-. .+.+ +.++..
T Consensus 67 ~~~Ia~~i~----~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~ 142 (319)
T TIGR03439 67 SSDIAASIP----SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYD 142 (319)
T ss_pred HHHHHHhcC----CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHH
Confidence 345555543 2337999999999776666554 1123578999999999998876522 2333 334322
Q ss_pred c----CCC--CCCceeEEEEc-CCCccccc-CHHHHHHHHHh-hcCCCcEEEEEc
Q 007645 257 R----LPF--PAFSFDIVHCS-RCLIPFTA-YNATYLIEVDR-LLRPGGYLVISG 302 (595)
Q Consensus 257 ~----LPf--pd~sFDlV~~s-~vL~h~~~-d~~~~L~Ei~R-vLRPGG~lvls~ 302 (595)
+ ++- ......+++.- ..+.++.. ....+|+++.+ .|+|||.|++..
T Consensus 143 ~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 143 DGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred HHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 1 321 12335666654 35655542 22488999999 999999999864
No 244
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.96 E-value=0.0049 Score=67.15 Aligned_cols=105 Identities=17% Similarity=0.119 Sum_probs=76.5
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC---eEEEEcccccC----CCCCCceeEEE
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP---AFVAMLGTRRL----PFPAFSFDIVH 269 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~---~~~~~~d~~~L----Pfpd~sFDlV~ 269 (595)
+++|||+=|=||.|+.+.+..|.. +++.+|.|...++.|+++ |+. ..++++|+... --...+||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~--~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGAS--EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCC--ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 349999999999999999988752 677789999999999887 442 56788775332 22234899999
Q ss_pred EcC---CC-----cccccCHHHHHHHHHhhcCCCcEEEEEcCCCCC
Q 007645 270 CSR---CL-----IPFTAYNATYLIEVDRLLRPGGYLVISGPPVQW 307 (595)
Q Consensus 270 ~s~---vL-----~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~ 307 (595)
.-- +- .....+...++..+.++|+|||.+++++.....
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~ 341 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHF 341 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCcc
Confidence 721 10 011123457889999999999999999864433
No 245
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=96.96 E-value=0.00038 Score=70.34 Aligned_cols=99 Identities=11% Similarity=0.191 Sum_probs=59.0
Q ss_pred eeEEecccchhHHHhhhcCC---CeEEEEeccCCCC-CchhHHhhc----cchhhhcccCCCCCCCC-CccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFSTYP-RTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~---~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~wce~f~typ-rtyDl~H~~~~~ 513 (595)
..|||+|||.|.++..|.+. |- .+|+-.|-. +-|..+-++ +...-++--+..+..+| ..+|+|.+...+
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~--~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l 132 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPN--VKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL 132 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecch
Confidence 57999999999999887652 31 133334432 444433322 21100111122223333 468988877766
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 550 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~ 550 (595)
.++. .-....+|-||-|+|+|||.+++.|.
T Consensus 133 ~~~~-------~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 133 QFLP-------PEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred hhCC-------HHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 5432 11245789999999999999999864
No 246
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.95 E-value=0.0041 Score=68.59 Aligned_cols=99 Identities=23% Similarity=0.303 Sum_probs=82.1
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC----CeEEEEcccccCCCCCCceeEEEEcCCCcccc
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI----PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT 278 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~----~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~ 278 (595)
++|-+|||.-.+...+-+.|.. +++-+|+|.-.++....++. ...+..++...+.|++++||+|+--..+.++.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 7999999999999998888765 67778999999998887753 25677888999999999999999988887766
Q ss_pred cCHH---------HHHHHHHhhcCCCcEEEEEcC
Q 007645 279 AYNA---------TYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 279 ~d~~---------~~L~Ei~RvLRPGG~lvls~p 303 (595)
++.. ..+.|+.|+|+|||+++..+-
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 4332 457999999999999876553
No 247
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.94 E-value=0.0018 Score=66.15 Aligned_cols=110 Identities=16% Similarity=0.171 Sum_probs=66.0
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchhhhcccCCCCCCCCCccchhhccCcccccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIK 517 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~wce~f~typrtyDl~H~~~~~s~~~ 517 (595)
.+|||+|||.|..+.++.....- .|+-.|-. ..+..+-++ |+-...+-. ... .+||+|.|+-...
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~~~~~~---~~~--~~fD~Vvani~~~--- 190 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVELNVYLP---QGD--LKADVIVANILAN--- 190 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCceEEEc---cCC--CCcCEEEEcCcHH---
Confidence 57999999999888777554221 13333332 444443333 221111100 010 1699998753322
Q ss_pred CCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh-HHHHHHHHhHhccCceeEEe
Q 007645 518 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-EVIDKVSRIANTVRWTAAVH 571 (595)
Q Consensus 518 ~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~-~~~~~~~~~~~~~~W~~~~~ 571 (595)
.+..++-++-|+|+|||++|+++-. +..+.+.+.+...-++....
T Consensus 191 ---------~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 191 ---------PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred ---------HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEE
Confidence 1345778999999999999998533 34566777777777876654
No 248
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.92 E-value=0.021 Score=62.06 Aligned_cols=105 Identities=16% Similarity=0.183 Sum_probs=61.0
Q ss_pred cHHHH-HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCc---HHHHHHHHHcCCCeE-EEEcccc
Q 007645 182 GADKY-IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSH---KAQIQFALERGIPAF-VAMLGTR 256 (595)
Q Consensus 182 ~a~~y-i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s---~~~l~~A~erg~~~~-~~~~d~~ 256 (595)
.+++| ++.+.+.... + .||=++=..|.++..|+..++. .+ .|.- .+..+.+..++++.. +...+..
T Consensus 30 aade~ll~~~~~~~~~--~---~~~i~nd~fGal~~~l~~~~~~--~~--~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~ 100 (378)
T PRK15001 30 AADEYLLQQLDDTEIR--G---PVLILNDAFGALSCALAEHKPY--SI--GDSYISELATRENLRLNGIDESSVKFLDST 100 (378)
T ss_pred cHHHHHHHHHhhcccC--C---CEEEEcCchhHHHHHHHhCCCC--ee--ehHHHHHHHHHHHHHHcCCCcccceeeccc
Confidence 46666 4555443211 1 6899999999999999976553 22 2422 122233344465533 2222221
Q ss_pred cCCCCCCceeEEEEcCCCcccccC---HHHHHHHHHhhcCCCcEEEEEc
Q 007645 257 RLPFPAFSFDIVHCSRCLIPFTAY---NATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 257 ~LPfpd~sFDlV~~s~vL~h~~~d---~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
-+++ +.+|+|+. .++.. ....|..+.++|.||+.++..+
T Consensus 101 -~~~~-~~~d~vl~-----~~PK~~~~l~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 101 -ADYP-QQPGVVLI-----KVPKTLALLEQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred -cccc-CCCCEEEE-----EeCCCHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 1233 45898874 34432 3467888889999999977544
No 249
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.92 E-value=0.00015 Score=68.42 Aligned_cols=61 Identities=26% Similarity=0.336 Sum_probs=49.6
Q ss_pred CeEEEEcccccCCCCCCceeEEEEcCCCccccc-CHHHHHHHHHhhcCCCcEEEEEcCCCCC
Q 007645 247 PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISGPPVQW 307 (595)
Q Consensus 247 ~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~-d~~~~L~Ei~RvLRPGG~lvls~p~~~~ 307 (595)
.+.+++-.....+|.++|.|+|.|.++++|+.- ....++++.+|+|||||++-++.|...+
T Consensus 30 ~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f 91 (185)
T COG4627 30 EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKF 91 (185)
T ss_pred ccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcch
Confidence 344444445667899999999999999999983 3348999999999999999999995543
No 250
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.91 E-value=0.0051 Score=66.22 Aligned_cols=108 Identities=12% Similarity=0.099 Sum_probs=69.8
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRL 258 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~L 258 (595)
..+++.+.+.+.... .+|||++||+|.++..|++.. ..++++|.++.+++.|+++ ++ ++.+...|+.++
T Consensus 184 ~~l~~~v~~~~~~~~---~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~ 257 (353)
T TIGR02143 184 IKMLEWACEVTQGSK---GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEF 257 (353)
T ss_pred HHHHHHHHHHhhcCC---CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHH
Confidence 334555555543222 259999999999999888763 2789999999999999876 44 467777776442
Q ss_pred -C-------C---C-----CCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 259 -P-------F---P-----AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 259 -P-------f---p-----d~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+ + . ...||+|+.----.. -...++..+. +|++.++++-.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G---~~~~~l~~l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 258 TQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAG---LDPDTCKLVQ---AYERILYISCN 312 (353)
T ss_pred HHHHhhccccccccccccccCCCCEEEECCCCCC---CcHHHHHHHH---cCCcEEEEEcC
Confidence 1 1 0 123799887543211 1234445444 48899988864
No 251
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=96.89 E-value=0.00069 Score=66.76 Aligned_cols=138 Identities=20% Similarity=0.321 Sum_probs=78.2
Q ss_pred ccCCCCeeeEEecccchhHHHhhhcCC--CeEEEEeccCCCCCchhHHhhc--cchhhhcccC-CCCCC-CC-Cccchhh
Q 007645 436 KLGTPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKSSTLSVIYDR--GLIGVYHDWC-EPFST-YP-RTYDLIH 508 (595)
Q Consensus 436 ~~~~~~~RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~~~l~~i~eR--Glig~~~~wc-e~f~t-yp-rtyDl~H 508 (595)
.+...+|+++++.|||-|-|.+.|... .+.++-++|. -|..+-+| |+..+ .|- -.++. .| .+|||||
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~----Al~~Ar~Rl~~~~~V--~~~~~dvp~~~P~~~FDLIV 111 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPR----ALARARERLAGLPHV--EWIQADVPEFWPEGRFDLIV 111 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HH----HHHHHHHHTTT-SSE--EEEES-TTT---SS-EEEEE
T ss_pred hcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHH----HHHHHHHhcCCCCCe--EEEECcCCCCCCCCCeeEEE
Confidence 378999999999999999999999654 4666655443 23333222 11110 111 11111 34 8999999
Q ss_pred ccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe---CCh-------HHHHHHHHhHhccCceeEEeccCCCCC
Q 007645 509 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR---DSP-------EVIDKVSRIANTVRWTAAVHDKEPGSN 578 (595)
Q Consensus 509 ~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r---d~~-------~~~~~~~~~~~~~~W~~~~~~~~~~~~ 578 (595)
.+-++=.+. +.-.+..++-.|...|+|||.+|+- |.. .=-+.|..++..+-=++.-..-..++
T Consensus 112 ~SEVlYYL~------~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~- 184 (201)
T PF05401_consen 112 LSEVLYYLD------DAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGGS- 184 (201)
T ss_dssp EES-GGGSS------SHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SS-
T ss_pred EehHhHcCC------CHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCCC-
Confidence 998887553 3345667888899999999999984 322 11345555555554444433222223
Q ss_pred CCceEEEE
Q 007645 579 GREKILVA 586 (595)
Q Consensus 579 ~~~~~l~~ 586 (595)
..|.-|++
T Consensus 185 ~~~~~~~~ 192 (201)
T PF05401_consen 185 PNEDCLLA 192 (201)
T ss_dssp TTSEEEEE
T ss_pred CCCceEee
Confidence 34555554
No 252
>PTZ00146 fibrillarin; Provisional
Probab=96.88 E-value=0.0029 Score=66.24 Aligned_cols=98 Identities=11% Similarity=0.162 Sum_probs=60.8
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCC-----CeEEEEeccCCCCCchhHHhhc-cchhhhcccCCCCCCCC---Cccchh
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSD-----PVWVMNVVPARKSSTLSVIYDR-GLIGVYHDWCEPFSTYP---RTYDLI 507 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~-----~vwvmnv~p~~~~~~l~~i~eR-Glig~~~~wce~f~typ---rtyDl~ 507 (595)
|..+ -+|||+|||.|+|...|.+. .|+.+-+.|.-..+.+.++-+| +++-+..|-+.+. .|+ -++|+|
T Consensus 130 IkpG--~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~-~y~~~~~~vDvV 206 (293)
T PTZ00146 130 IKPG--SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQ-KYRMLVPMVDVI 206 (293)
T ss_pred cCCC--CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChh-hhhcccCCCCEE
Confidence 4555 47999999999998888543 3666654433222345555444 5666666755432 122 467777
Q ss_pred hccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 508 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 508 H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
=++-. ..=....+++|+.|+|+|||+|+|.
T Consensus 207 ~~Dva-----------~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 207 FADVA-----------QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEeCC-----------CcchHHHHHHHHHHhccCCCEEEEE
Confidence 43321 1112234678999999999999994
No 253
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.86 E-value=0.019 Score=56.38 Aligned_cols=132 Identities=19% Similarity=0.193 Sum_probs=86.1
Q ss_pred CCeeecCCCCCcccccHHHHHHHHHhhccc--cCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc
Q 007645 167 GPYFTFPGGGTMFADGADKYIDKLKQYIPI--TGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER 244 (595)
Q Consensus 167 ~~~~~fp~~g~~F~~~a~~yi~~L~~~l~~--~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er 244 (595)
+.....|.+.+ ..+..+...+.+.+++.. ..|. ++||+=+|+|.++.+.+++|.. .++-+|.+...++..+++
T Consensus 11 gr~L~~p~~~~-~RPT~drVREalFNil~~~~i~g~--~~LDlFAGSGaLGlEAlSRGA~--~~~~vE~~~~a~~~l~~N 85 (187)
T COG0742 11 GRKLKTPDGPG-TRPTTDRVREALFNILAPDEIEGA--RVLDLFAGSGALGLEALSRGAA--RVVFVEKDRKAVKILKEN 85 (187)
T ss_pred CCcccCCCCCC-cCCCchHHHHHHHHhccccccCCC--EEEEecCCccHhHHHHHhCCCc--eEEEEecCHHHHHHHHHH
Confidence 44455555422 234456667778888765 3444 8999999999999999999865 556678888888888776
Q ss_pred ----C--CCeEEEEcccccC-CCCCC--ceeEEEEcCCCcccccCHHHHHHH--HHhhcCCCcEEEEEcC
Q 007645 245 ----G--IPAFVAMLGTRRL-PFPAF--SFDIVHCSRCLIPFTAYNATYLIE--VDRLLRPGGYLVISGP 303 (595)
Q Consensus 245 ----g--~~~~~~~~d~~~L-Pfpd~--sFDlV~~s~vL~h~~~d~~~~L~E--i~RvLRPGG~lvls~p 303 (595)
+ ....+...|+... +.... .||+|+.---+..-.-+....+.. -...|+|+|.+++-..
T Consensus 86 ~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 86 LKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 3 3456666665432 22222 499999876553111111223333 5577999999999764
No 254
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=96.84 E-value=0.0021 Score=63.12 Aligned_cols=97 Identities=20% Similarity=0.228 Sum_probs=58.2
Q ss_pred eeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhccc----hhh-hcccCCCCCCCCCccchhhccCccc
Q 007645 442 IRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGL----IGV-YHDWCEPFSTYPRTYDLIHVSGIES 514 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eRGl----ig~-~~~wce~f~typrtyDl~H~~~~~s 514 (595)
=.+|+|+|||.|.++.++... +. .-+++-.|.. ..+..+-++.- +-. .+|-.+ .+.-+.+||+|++...+.
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~-~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPD-RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA-LPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCC-CceEEEEECCHHHHHHHHHHhccCCCceEEecchhc-CCCCCCcEEEEEEeeeeC
Confidence 368999999999999888543 11 0122222322 34444444321 111 111111 111126899999876665
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.. .....+|-++-++|+|||++++.+
T Consensus 118 ~~---------~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 118 NV---------TDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred Cc---------ccHHHHHHHHHHHcCCCcEEEEEE
Confidence 33 456789999999999999999854
No 255
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=96.84 E-value=0.00065 Score=69.22 Aligned_cols=98 Identities=8% Similarity=0.124 Sum_probs=59.7
Q ss_pred eeEEecccchhHHHhhhcC---CCeEEEEeccCCCC-CchhHHhhc----cchhhhcccCCCCCCCC-CccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFSTYP-RTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~---~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~wce~f~typ-rtyDl~H~~~~~ 513 (595)
..|||+|||.|..+.+|.. .|-+ .|+-.|-. .-|..+-+| |+..-..--|..+...| ..||+|-++.++
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~--~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l 135 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNC--KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTL 135 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHH
Confidence 4699999999999887754 3322 23444432 444444333 22111111223333444 458987776665
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.+.. .-....++-||-|+|+|||.+++.|
T Consensus 136 ~~l~-------~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 136 QFLE-------PSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HhCC-------HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 5432 2234679999999999999999986
No 256
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.84 E-value=0.011 Score=59.61 Aligned_cols=112 Identities=15% Similarity=0.142 Sum_probs=77.7
Q ss_pred ccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--eEEEEcc
Q 007645 181 DGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLG 254 (595)
Q Consensus 181 ~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~~d 254 (595)
....++++.+.+.+. ++ +.||||.=||..+..++.+-.....+..+|++++..+.+.+- |.. +.+.++.
T Consensus 59 ~d~g~fl~~li~~~~---ak--~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~ 133 (237)
T KOG1663|consen 59 PDKGQFLQMLIRLLN---AK--RTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGP 133 (237)
T ss_pred hHHHHHHHHHHHHhC---Cc--eEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecc
Confidence 334455655555543 23 899999999977777776644456788889999888777543 432 4455544
Q ss_pred c-ccC-----CCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEE
Q 007645 255 T-RRL-----PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 255 ~-~~L-----Pfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls 301 (595)
+ +.| ..+.++||+|+. .||..+-..+..++.++||+||.+++-
T Consensus 134 a~esLd~l~~~~~~~tfDfaFv----DadK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 134 ALESLDELLADGESGTFDFAFV----DADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred hhhhHHHHHhcCCCCceeEEEE----ccchHHHHHHHHHHHhhcccccEEEEe
Confidence 2 222 135789999985 466655568899999999999999884
No 257
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=96.81 E-value=0.0017 Score=64.45 Aligned_cols=122 Identities=14% Similarity=0.160 Sum_probs=70.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cc-
Q 007645 413 DVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL- 486 (595)
Q Consensus 413 ~~f~~d~~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl- 486 (595)
..|....+.=..+++.....+...-....-.+|||+|||.|.++..|.+... .++=.|-. ..+..+-++ |+
T Consensus 17 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~ 93 (224)
T TIGR01983 17 GKFKPLHKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLL 93 (224)
T ss_pred CcHHHHHHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 3455554544455555555443110011234899999999999988865432 12223322 233333221 22
Q ss_pred -----hhhhcccCCCCCCCCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 487 -----IGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 487 -----ig~~~~wce~f~typrtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.+-..++. ...|.+||+|.+..++.+. -+...+|-++.++|+|||.+++.+
T Consensus 94 ~~~~~~~d~~~~~---~~~~~~~D~i~~~~~l~~~---------~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 94 KIEYRCTSVEDLA---EKGAKSFDVVTCMEVLEHV---------PDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred ceEEEeCCHHHhh---cCCCCCccEEEehhHHHhC---------CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 12222221 1125789999988877643 356789999999999999999874
No 258
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.81 E-value=0.006 Score=65.89 Aligned_cols=107 Identities=14% Similarity=0.151 Sum_probs=69.6
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccC-
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRL- 258 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~L- 258 (595)
.+++.+.+.+... ..++||++||+|.++..|++. . ..+.++|.++.+++.|+++ ++ ++.+...|+.+.
T Consensus 194 ~l~~~v~~~~~~~---~~~vLDl~~G~G~~sl~la~~-~--~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l 267 (362)
T PRK05031 194 KMLEWALDATKGS---KGDLLELYCGNGNFTLALARN-F--RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFT 267 (362)
T ss_pred HHHHHHHHHhhcC---CCeEEEEeccccHHHHHHHhh-C--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHH
Confidence 3444444444322 136999999999999988875 2 2788999999999998875 44 467787776442
Q ss_pred C-CC--------------CCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 259 P-FP--------------AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 259 P-fp--------------d~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+ +. ...||+|+.---... -...++..+. +|++.++++-.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G---~~~~~l~~l~---~~~~ivyvSC~ 321 (362)
T PRK05031 268 QAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAG---LDDETLKLVQ---AYERILYISCN 321 (362)
T ss_pred HHHhhcccccccccccccCCCCCEEEECCCCCC---CcHHHHHHHH---ccCCEEEEEeC
Confidence 1 10 125899997643211 1234444444 47888888864
No 259
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.73 E-value=0.0077 Score=62.04 Aligned_cols=83 Identities=18% Similarity=0.211 Sum_probs=66.2
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---CCeEEEEcccccCCCC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRRLPFP 261 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---~~~~~~~~d~~~LPfp 261 (595)
..++.|.+.+....+ .+|||||+|.|.++..|++++. .++++++++.+++.-+++. .+..++.+|+-...++
T Consensus 17 ~v~~kIv~~a~~~~~--d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 17 NVIDKIVEAANISPG--DNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHHHHHHhcCCCCC--CeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcch
Confidence 457777777776654 4999999999999999999855 4677789999998888773 4578888898888877
Q ss_pred CC-ceeEEEEcC
Q 007645 262 AF-SFDIVHCSR 272 (595)
Q Consensus 262 d~-sFDlV~~s~ 272 (595)
+. .++.|+++-
T Consensus 92 ~l~~~~~vVaNl 103 (259)
T COG0030 92 SLAQPYKVVANL 103 (259)
T ss_pred hhcCCCEEEEcC
Confidence 54 688898874
No 260
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=96.72 E-value=0.00074 Score=58.34 Aligned_cols=90 Identities=21% Similarity=0.273 Sum_probs=45.8
Q ss_pred EecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchh--hhc-ccCCCCCCCC-CccchhhccCccccc
Q 007645 446 MDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIG--VYH-DWCEPFSTYP-RTYDLIHVSGIESLI 516 (595)
Q Consensus 446 mDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig--~~~-~wce~f~typ-rtyDl~H~~~~~s~~ 516 (595)
||+|||.|.+...|...- -...++=.|-. +-|..+-+| +.-. ... +--+.+...+ .+||+|.+..++.+.
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999997662 22333333322 444222222 2100 111 1112233344 599999999999865
Q ss_pred cCCCCCCCCCChhhhHHhhcccccCCcEE
Q 007645 517 KNPGSNKNSCSLVDLMVEMDRMLRPEGTV 545 (595)
Q Consensus 517 ~~~~~~~~~c~~~~~llEmdRiLRP~G~~ 545 (595)
=.+..+|-.+-++|+|||.+
T Consensus 80 ---------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ---------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---------S-HHHHHHHHTTT-TSS-EE
T ss_pred ---------hhHHHHHHHHHHHcCCCCCC
Confidence 36778999999999999985
No 261
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=96.70 E-value=0.0014 Score=65.73 Aligned_cols=95 Identities=15% Similarity=0.201 Sum_probs=62.1
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchhhhc--ccCCCCCCCCCccchhhccCcccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIGVYH--DWCEPFSTYPRTYDLIHVSGIESL 515 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~--~wce~f~typrtyDl~H~~~~~s~ 515 (595)
..|||+|||.|.++..|.+.. .+|+=.|.. +.+..+-++ |+-..++ ++.+.....+-+||+|.+..++..
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 459999999999998887653 344444443 444444433 3211121 221111112368999999888775
Q ss_pred ccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 516 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 516 ~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
. -+...+|-++.|+|+|||.+++.+
T Consensus 127 ~---------~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 127 V---------PDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred c---------CCHHHHHHHHHHHcCCCcEEEEEe
Confidence 4 245678999999999999999974
No 262
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.69 E-value=0.012 Score=63.90 Aligned_cols=97 Identities=8% Similarity=0.015 Sum_probs=72.4
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC-CCCCceeEEEEcCCCc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP-FPAFSFDIVHCSRCLI 275 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP-fpd~sFDlV~~s~vL~ 275 (595)
-+|||+.||+|..+..++.+...+-.++.+|+++.+++.++++ +. ++.+...|+..+- .....||+|..-- +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence 3799999999999999998721124788899999999988765 33 3566666655432 1235799998753 2
Q ss_pred ccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 276 PFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 276 h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
..+..++..+.+.+++||.+.++..
T Consensus 124 ---Gs~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 124 ---GTPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred ---CCcHHHHHHHHHhcccCCEEEEEec
Confidence 2446799999999999999999843
No 263
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.67 E-value=0.011 Score=60.97 Aligned_cols=81 Identities=15% Similarity=0.136 Sum_probs=60.0
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc--CCC----eEEEEcccccC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER--GIP----AFVAMLGTRRL 258 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er--g~~----~~~~~~d~~~L 258 (595)
..+++|.+..+.+.+. .||+||.|||.++..|++++- .+.++++++.|+....+| |.+ ..+..+|.-..
T Consensus 45 ~v~~~I~~ka~~k~tD--~VLEvGPGTGnLT~~lLe~~k---kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~ 119 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTD--VVLEVGPGTGNLTVKLLEAGK---KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT 119 (315)
T ss_pred HHHHHHHhccCCCCCC--EEEEeCCCCCHHHHHHHHhcC---eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC
Confidence 3467777777777655 999999999999999999865 456668889998888777 333 34555565444
Q ss_pred CCCCCceeEEEEcC
Q 007645 259 PFPAFSFDIVHCSR 272 (595)
Q Consensus 259 Pfpd~sFDlV~~s~ 272 (595)
++ -.||.++++-
T Consensus 120 d~--P~fd~cVsNl 131 (315)
T KOG0820|consen 120 DL--PRFDGCVSNL 131 (315)
T ss_pred CC--cccceeeccC
Confidence 43 3699999864
No 264
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.67 E-value=0.027 Score=57.13 Aligned_cols=142 Identities=20% Similarity=0.236 Sum_probs=95.5
Q ss_pred ccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEE-cccccCC
Q 007645 181 DGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAM-LGTRRLP 259 (595)
Q Consensus 181 ~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~-~d~~~LP 259 (595)
+++..+...+.+.--... .+++||+|+-||.|+..++++|.. .+.++|...+|+..-.+....+.... .++..+.
T Consensus 62 RG~~KL~~ale~F~l~~k--~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~ 137 (245)
T COG1189 62 RGGLKLEKALEEFELDVK--GKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLT 137 (245)
T ss_pred cHHHHHHHHHHhcCcCCC--CCEEEEecCCCccHHHHHHHcCCc--EEEEEEccCCccCHhHhcCCcEEEEecCChhhCC
Confidence 345555554444322233 459999999999999999999764 77889999999988887776654433 2333332
Q ss_pred ---CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCC----------Cch-----hHHHHHHHH
Q 007645 260 ---FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPK----------QDK-----EWADLQAVA 321 (595)
Q Consensus 260 ---fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~----------~~~-----~w~~l~~la 321 (595)
+. +..|+++|--+|+. ...+|-.+..+|+|+|.++...-|..--. ++. .-..+.+.+
T Consensus 138 ~~~~~-~~~d~~v~DvSFIS----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~ 212 (245)
T COG1189 138 PEDFT-EKPDLIVIDVSFIS----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFA 212 (245)
T ss_pred HHHcc-cCCCeEEEEeehhh----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHH
Confidence 22 36789999877744 46789999999999998887654321100 011 134477788
Q ss_pred HHcCcEEEEe
Q 007645 322 RALCYELIAV 331 (595)
Q Consensus 322 ~~~~w~~v~~ 331 (595)
+..+|....-
T Consensus 213 ~~~g~~~~gl 222 (245)
T COG1189 213 KELGFQVKGL 222 (245)
T ss_pred hhcCcEEeee
Confidence 8888887754
No 265
>PRK05785 hypothetical protein; Provisional
Probab=96.63 E-value=0.0029 Score=63.80 Aligned_cols=105 Identities=16% Similarity=0.201 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccchhhhcccCCCCC
Q 007645 420 RRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFS 498 (595)
Q Consensus 420 ~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~wce~f~ 498 (595)
..|++.+-...... +..+ .+|||+|||.|-++..|.+.- --+|+-.|-. +-|..+-+++ ...+.-.|.++
T Consensus 35 ~~wr~~~~~~l~~~---~~~~--~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp 105 (226)
T PRK05785 35 VRWRAELVKTILKY---CGRP--KKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--DKVVGSFEALP 105 (226)
T ss_pred HHHHHHHHHHHHHh---cCCC--CeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--ceEEechhhCC
Confidence 56776654433211 1222 589999999999998887652 1256666655 6666666653 11222334444
Q ss_pred CCC-CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCc
Q 007645 499 TYP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEG 543 (595)
Q Consensus 499 typ-rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G 543 (595)
|| .+||+|-++..+-++ -+.+..|-||-|+|||.+
T Consensus 106 -~~d~sfD~v~~~~~l~~~---------~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 106 -FRDKSFDVVMSSFALHAS---------DNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred -CCCCCEEEEEecChhhcc---------CCHHHHHHHHHHHhcCce
Confidence 44 899999987766432 457889999999999954
No 266
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.62 E-value=0.0073 Score=61.91 Aligned_cols=140 Identities=20% Similarity=0.298 Sum_probs=76.7
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhc---cchh----hhcccCCCCCCCCCccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR---GLIG----VYHDWCEPFSTYPRTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eR---Glig----~~~~wce~f~typrtyDl~H~~~~~ 513 (595)
.+|+|+|||.|.++.+|... |- .+|+-.|.. ..+..+-++ +... .-.|+-+++. +.+||+|-++--+
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~--~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy 185 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPD--AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVSNPPY 185 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEECCCc
Confidence 47999999999999988653 11 234444433 444443332 2111 1123333332 3789999876444
Q ss_pred ccccC------------CCC--CCCCC---ChhhhHHhhcccccCCcEEEEeCChHHHHHHHHhHhccCceeEEeccCCC
Q 007645 514 SLIKN------------PGS--NKNSC---SLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPG 576 (595)
Q Consensus 514 s~~~~------------~~~--~~~~c---~~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~~~~~W~~~~~~~~~~ 576 (595)
..... |.. ..... .+..++-++-++|+|||++++--....-+.+++++...-+....... .
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~--d 263 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRK--D 263 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEec--C
Confidence 32110 000 00000 12357778889999999999964444445677777665554222211 2
Q ss_pred CCCCceEEEEEe
Q 007645 577 SNGREKILVATK 588 (595)
Q Consensus 577 ~~~~~~~l~~~K 588 (595)
-.+.+++++++|
T Consensus 264 ~~~~~r~~~~~~ 275 (275)
T PRK09328 264 LAGRDRVVLGRR 275 (275)
T ss_pred CCCCceEEEEEC
Confidence 234678888765
No 267
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=96.62 E-value=0.0015 Score=67.30 Aligned_cols=93 Identities=17% Similarity=0.192 Sum_probs=55.3
Q ss_pred eeEEecccchhHHHhhh---cCCCeEEEEeccCCCC-CchhHHhhc----cchhh---hcccCCCCCCCC-Cccchhhcc
Q 007645 443 RNIMDMNAFFGGFAAAL---TSDPVWVMNVVPARKS-STLSVIYDR----GLIGV---YHDWCEPFSTYP-RTYDLIHVS 510 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l---~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~---~~~wce~f~typ-rtyDl~H~~ 510 (595)
.+|||+|||.|..+..+ ..... .|+-.|-. +.+..+-++ |+-.+ ..|. +.++ +| .+||+|+++
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~---~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l~-~~~~~fD~Vi~~ 153 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTG---KVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-EALP-VADNSVDVIISN 153 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCC---EEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhCC-CCCCceeEEEEc
Confidence 49999999998754322 22221 22233332 445544443 22100 0111 1222 34 799999988
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.++.+. -+...+|-|+=|+|||||.+++.|
T Consensus 154 ~v~~~~---------~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 154 CVINLS---------PDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred CcccCC---------CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 777543 234679999999999999999964
No 268
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=96.56 E-value=0.0015 Score=66.46 Aligned_cols=111 Identities=25% Similarity=0.328 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccch-hh-----hcc
Q 007645 420 RRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLI-GV-----YHD 492 (595)
Q Consensus 420 ~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGli-g~-----~~~ 492 (595)
..|++.+-. .+. ++.| -+|||++||+|=+|..+.+.-= .-.|+-.|=. +-|.++-+|--= |. .+-
T Consensus 37 ~~Wr~~~i~---~~~--~~~g--~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~ 108 (238)
T COG2226 37 RLWRRALIS---LLG--IKPG--DKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVG 108 (238)
T ss_pred HHHHHHHHH---hhC--CCCC--CEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEe
Confidence 667765533 122 2223 6899999999999999965321 3455555544 777777777541 11 122
Q ss_pred cCCCCCCCC-CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 493 WCEPFSTYP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 493 wce~f~typ-rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
==|.++ || .|||++=++..+-.. =+++..|=||-|+|+|||-+++=
T Consensus 109 dAe~LP-f~D~sFD~vt~~fglrnv---------~d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 109 DAENLP-FPDNSFDAVTISFGLRNV---------TDIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred chhhCC-CCCCccCEEEeeehhhcC---------CCHHHHHHHHHHhhcCCeEEEEE
Confidence 224455 66 999999877766643 36788999999999999987774
No 269
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.55 E-value=0.0059 Score=64.20 Aligned_cols=58 Identities=16% Similarity=0.091 Sum_probs=45.7
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG 245 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg 245 (595)
.++.+.+.+...++. ++||.+||.|.++..+++.......+.++|.++.+++.|+++-
T Consensus 7 ll~Evl~~L~~~pg~--~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L 64 (296)
T PRK00050 7 LLDEVVDALAIKPDG--IYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRL 64 (296)
T ss_pred cHHHHHHhhCCCCCC--EEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhh
Confidence 445566666555544 8999999999999999988433457999999999999998763
No 270
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.53 E-value=0.017 Score=59.56 Aligned_cols=128 Identities=20% Similarity=0.204 Sum_probs=89.0
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C--CCeEEEEcccccCCC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G--IPAFVAMLGTRRLPF 260 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g--~~~~~~~~d~~~LPf 260 (595)
+..|..++...+|+ +||+-|.|+|+++.+++..-.....+.-.|+++...+.|++. + -++.+..-|.....|
T Consensus 94 ia~I~~~L~i~PGs--vV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 94 IAMILSMLEIRPGS--VVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred HHHHHHHhcCCCCC--EEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence 45667778888877 999999999999999998743445677789999888888764 3 356777777666554
Q ss_pred C--CCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCc-EEEEEcCCCCCCCCchhHHHHH---HHHHHcCcEEEEe
Q 007645 261 P--AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG-YLVISGPPVQWPKQDKEWADLQ---AVARALCYELIAV 331 (595)
Q Consensus 261 p--d~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG-~lvls~p~~~~~~~~~~w~~l~---~la~~~~w~~v~~ 331 (595)
. +..+|.|+.- ++ .+-.++--++.+||-+| +|+-..| ..++++ +++.+++|.-+..
T Consensus 172 ~~ks~~aDaVFLD-----lP-aPw~AiPha~~~lk~~g~r~csFSP---------CIEQvqrtce~l~~~gf~~i~~ 233 (314)
T KOG2915|consen 172 LIKSLKADAVFLD-----LP-APWEAIPHAAKILKDEGGRLCSFSP---------CIEQVQRTCEALRSLGFIEIET 233 (314)
T ss_pred cccccccceEEEc-----CC-ChhhhhhhhHHHhhhcCceEEeccH---------HHHHHHHHHHHHHhCCCceEEE
Confidence 3 6789999853 33 34456666777888766 6665544 233333 4566778866644
No 271
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.53 E-value=0.006 Score=57.38 Aligned_cols=85 Identities=12% Similarity=0.065 Sum_probs=60.4
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPA 262 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd 262 (595)
+..|-+.+....|+ .++|+|||.|-+.....-. ..-.+.|+|+.+.+++.+..+ .+.+.+.+++...+-+..
T Consensus 37 ~~~Ih~TygdiEgk--kl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~ 112 (185)
T KOG3420|consen 37 LYTIHNTYGDIEGK--KLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKG 112 (185)
T ss_pred HHHHHhhhccccCc--chhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccC
Confidence 33444444433333 8999999999776333322 234678999999999998766 345677888888777777
Q ss_pred CceeEEEEcCCCc
Q 007645 263 FSFDIVHCSRCLI 275 (595)
Q Consensus 263 ~sFDlV~~s~vL~ 275 (595)
+.||.++.+.-|.
T Consensus 113 g~fDtaviNppFG 125 (185)
T KOG3420|consen 113 GIFDTAVINPPFG 125 (185)
T ss_pred CeEeeEEecCCCC
Confidence 8999999987663
No 272
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.50 E-value=0.014 Score=61.63 Aligned_cols=97 Identities=12% Similarity=0.131 Sum_probs=60.8
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCCCCceeEEEEcCCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCL 274 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfpd~sFDlV~~s~vL 274 (595)
.+.|||+|||+|.++...+..|.. .+.+++.| +|.+.|++. .+ .+.++.+.+++..+| +..|+|++--+-
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~--~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAK--KVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcc--eEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence 448999999999888877777653 45555544 466666653 22 234444556666665 678999985433
Q ss_pred cccc-cCHHHHHHHHHhhcCCCcEEEEE
Q 007645 275 IPFT-AYNATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 275 ~h~~-~d~~~~L~Ei~RvLRPGG~lvls 301 (595)
.-+. +..-.....+.|.|+|.|.++=+
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 2222 11112233456999999998644
No 273
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.47 E-value=0.026 Score=60.25 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=62.9
Q ss_pred CcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCccccc
Q 007645 200 TLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA 279 (595)
Q Consensus 200 ~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~ 279 (595)
...++||+||++|.|+..|+++|. .|+++|..+ +.........+.+...+..+..-+.+.+|.++|--+ .
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~--l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv-----e 280 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGP--MAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV-----E 280 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCC---EEEEEechh--cCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc-----c
Confidence 345999999999999999999975 677778543 222233344566666665444323678999998654 3
Q ss_pred CHHHHHHHHHhhcCCC--cEEEEEc
Q 007645 280 YNATYLIEVDRLLRPG--GYLVISG 302 (595)
Q Consensus 280 d~~~~L~Ei~RvLRPG--G~lvls~ 302 (595)
.+..++.-+.+-|..| ..+++..
T Consensus 281 ~P~rva~lm~~Wl~~g~cr~aIfnL 305 (357)
T PRK11760 281 KPARVAELMAQWLVNGWCREAIFNL 305 (357)
T ss_pred CHHHHHHHHHHHHhcCcccEEEEEE
Confidence 5677777777777665 3455543
No 274
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=96.47 E-value=0.0016 Score=65.89 Aligned_cols=114 Identities=18% Similarity=0.099 Sum_probs=79.7
Q ss_pred CCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccchhhhcccCCCCC--------CCCCccchhhcc
Q 007645 440 PAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFS--------TYPRTYDLIHVS 510 (595)
Q Consensus 440 ~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~wce~f~--------typrtyDl~H~~ 510 (595)
..=|.+.|+|||.| +||..+..= -=+|+-+|-. .+|++ ..-+..-+||+---+|+ .=+.+-|||-|.
T Consensus 32 ~~h~~a~DvG~G~G-qa~~~iae~--~k~VIatD~s~~mL~~-a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNG-QAARGIAEH--YKEVIATDVSEAMLKV-AKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred CCcceEEEeccCCC-cchHHHHHh--hhhheeecCCHHHHHH-hhcCCCcccccCCccccccccccccCCCcceeeehhh
Confidence 44569999999999 766553211 2367777766 78884 44555556665544444 236899999999
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCc-EEE---EeCChHHHHHHHHhHhccCce
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEG-TVV---VRDSPEVIDKVSRIANTVRWT 567 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G-~~i---~rd~~~~~~~~~~~~~~~~W~ 567 (595)
.++- | |+++..+-|+-|+|||.| .+. ++|+.-++-++-++..+++|+
T Consensus 108 qa~H-W---------Fdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 108 QAVH-W---------FDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hhHH-h---------hchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 8874 5 899999999999999999 222 355555566666666666664
No 275
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.46 E-value=0.02 Score=63.37 Aligned_cols=109 Identities=17% Similarity=0.279 Sum_probs=75.9
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCC
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPF 260 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPf 260 (595)
+++...+.+....+. ++||+=||.|.|+..|+++ +..+.++++++++++.|+++ ++ ++.|..++++++..
T Consensus 281 l~~~a~~~~~~~~~~--~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~ 355 (432)
T COG2265 281 LYETALEWLELAGGE--RVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTP 355 (432)
T ss_pred HHHHHHHHHhhcCCC--EEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhh
Confidence 344455555554434 8999999999999999976 34788899999999988765 44 47788888776643
Q ss_pred C---CCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 261 P---AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 261 p---d~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
. ...||.|+..--... -...+++.+.+ ++|-..+++|-.
T Consensus 356 ~~~~~~~~d~VvvDPPR~G---~~~~~lk~l~~-~~p~~IvYVSCN 397 (432)
T COG2265 356 AWWEGYKPDVVVVDPPRAG---ADREVLKQLAK-LKPKRIVYVSCN 397 (432)
T ss_pred hccccCCCCEEEECCCCCC---CCHHHHHHHHh-cCCCcEEEEeCC
Confidence 2 357899986532211 11355555555 478888999875
No 276
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=96.43 E-value=0.0036 Score=61.41 Aligned_cols=123 Identities=11% Similarity=0.140 Sum_probs=68.9
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHH----hhccchhhhcccCCCC--C--CCC-CccchhhccC
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVI----YDRGLIGVYHDWCEPF--S--TYP-RTYDLIHVSG 511 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i----~eRGlig~~~~wce~f--~--typ-rtyDl~H~~~ 511 (595)
+.|||+|||.|.|+.+|... |- .||+-.|-. .-+..+ -..|+-.+-.-.+.+. . .+| .++|.|+.+.
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~--~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPD--KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCC--CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 57999999999999888653 21 133333332 222222 2333321111112221 1 145 4889887542
Q ss_pred ccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe-CChHHHHHHHHhHhc-cCcee
Q 007645 512 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIANT-VRWTA 568 (595)
Q Consensus 512 ~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r-d~~~~~~~~~~~~~~-~~W~~ 568 (595)
. .+|........|...+.+|-|+-|+|+|||.+++. |.....+.+.+.+.. -+|+.
T Consensus 96 p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 96 P-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred C-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 2 22321111235677788999999999999999986 666556655554433 33554
No 277
>PRK04266 fibrillarin; Provisional
Probab=96.42 E-value=0.007 Score=61.24 Aligned_cols=94 Identities=14% Similarity=0.202 Sum_probs=50.7
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCC----CeEEEEeccCCCCCchh----HHhhc-cchhhhcccCCCCC--CCCCccc
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSD----PVWVMNVVPARKSSTLS----VIYDR-GLIGVYHDWCEPFS--TYPRTYD 505 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~----~vwvmnv~p~~~~~~l~----~i~eR-Glig~~~~wce~f~--typrtyD 505 (595)
+..+ -.|||+|||.|++...|.+. .|+.+-+-| .-|. .+-+| ++.-+..|-.++.. ..+.+||
T Consensus 70 i~~g--~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~----~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D 143 (226)
T PRK04266 70 IKKG--SKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAP----RPMRELLEVAEERKNIIPILADARKPERYAHVVEKVD 143 (226)
T ss_pred CCCC--CEEEEEccCCCHHHHHHHHhcCCCeEEEEECCH----HHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCC
Confidence 4455 36999999999999998653 244442222 2222 22222 22233334333211 1234577
Q ss_pred hhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEE
Q 007645 506 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 506 l~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
.|= +... ..=....+|-|+-|+|||||.++|
T Consensus 144 ~i~-----~d~~------~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 144 VIY-----QDVA------QPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred EEE-----ECCC------ChhHHHHHHHHHHHhcCCCcEEEE
Confidence 752 1110 000112346799999999999999
No 278
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.39 E-value=0.021 Score=60.95 Aligned_cols=163 Identities=17% Similarity=0.147 Sum_probs=99.0
Q ss_pred cCCeeecCCCCCcccccHH-HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc
Q 007645 166 SGPYFTFPGGGTMFADGAD-KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER 244 (595)
Q Consensus 166 e~~~~~fp~~g~~F~~~a~-~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er 244 (595)
.+++--+..|+-+|...-+ .|.+.+.--.......-++||-+|.|.|.-+++|++. .....++-+|.++.|++.++..
T Consensus 254 g~d~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~ 332 (508)
T COG4262 254 GDDLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHA 332 (508)
T ss_pred cCceEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhh
Confidence 3445556667777755433 3444432211121233568999999999999999987 2356889999999999999733
Q ss_pred ------------CCCeEEEEcccccC-CCCCCceeEEEEcCCCcccccC-----HHHHHHHHHhhcCCCcEEEEEcCCCC
Q 007645 245 ------------GIPAFVAMLGTRRL-PFPAFSFDIVHCSRCLIPFTAY-----NATYLIEVDRLLRPGGYLVISGPPVQ 306 (595)
Q Consensus 245 ------------g~~~~~~~~d~~~L-Pfpd~sFDlV~~s~vL~h~~~d-----~~~~L~Ei~RvLRPGG~lvls~p~~~ 306 (595)
.+.+.++..|+.+. .-..+.||.|+.-.-= +-... -..+..-+.|.|+++|.+++.....+
T Consensus 333 ~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~D-P~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y 411 (508)
T COG4262 333 TVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPD-PSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPY 411 (508)
T ss_pred hHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCC-CCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCc
Confidence 12345555554332 2334589999863210 10001 12567778899999999999765443
Q ss_pred CCCCchhHHHHHHHHHHcCcEEEEee
Q 007645 307 WPKQDKEWADLQAVARALCYELIAVD 332 (595)
Q Consensus 307 ~~~~~~~w~~l~~la~~~~w~~v~~~ 332 (595)
+. ++.-|. +....++.++...-..
T Consensus 412 ~t-p~vfw~-i~aTik~AG~~~~Pyh 435 (508)
T COG4262 412 FT-PRVFWR-IDATIKSAGYRVWPYH 435 (508)
T ss_pred cC-Cceeee-ehhHHHhCcceeeeeE
Confidence 33 222243 4555666676655443
No 279
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.37 E-value=0.011 Score=59.12 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=61.8
Q ss_pred ccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHc-----------CC
Q 007645 179 FADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE-NILTLSFAPRDSHKAQIQFALER-----------GI 246 (595)
Q Consensus 179 F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~er-----------g~ 246 (595)
++.-....+..+.+.+....++ +.+|+|||.|......+-. ++. ...|+++.+...+.|.+. |.
T Consensus 23 YGEi~~~~~~~il~~~~l~~~d--vF~DlGSG~G~~v~~aal~~~~~--~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~ 98 (205)
T PF08123_consen 23 YGEISPEFVSKILDELNLTPDD--VFYDLGSGVGNVVFQAALQTGCK--KSVGIEILPELHDLAEELLEELKKRMKHYGK 98 (205)
T ss_dssp GGGCHHHHHHHHHHHTT--TT---EEEEES-TTSHHHHHHHHHH--S--EEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB
T ss_pred eeecCHHHHHHHHHHhCCCCCC--EEEECCCCCCHHHHHHHHHcCCc--EEEEEEechHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344455566677777665544 9999999999776655433 332 367778887766655421 22
Q ss_pred ---CeEEEEcccccCCCCC---CceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEE
Q 007645 247 ---PAFVAMLGTRRLPFPA---FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVI 300 (595)
Q Consensus 247 ---~~~~~~~d~~~LPfpd---~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvl 300 (595)
++.+..+|..+.++.+ ..-|+|+++... +.++....|.++..-||+|-+++-
T Consensus 99 ~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 99 RPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp ---EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred ccccceeeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEE
Confidence 2344454433222110 246999998654 223445667888888998877664
No 280
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.33 E-value=0.0038 Score=51.85 Aligned_cols=95 Identities=24% Similarity=0.290 Sum_probs=57.0
Q ss_pred eEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHh---hccc---hhhhc-ccCCCCCCCCCccchhhccCcccc
Q 007645 444 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIY---DRGL---IGVYH-DWCEPFSTYPRTYDLIHVSGIESL 515 (595)
Q Consensus 444 nvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~---eRGl---ig~~~-~wce~f~typrtyDl~H~~~~~s~ 515 (595)
+|+|+|||.|+++..+...+. .++.-.|-. +.+..+- +.+. +-.++ |+.+.-..-+.+||++.++..+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 489999999999998877332 233333332 2222222 1111 11111 111111112478999999888874
Q ss_pred ccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 516 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 516 ~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
+ .=....++-.+.+.|||+|.+++.
T Consensus 79 ~--------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L--------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h--------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 2 124567888899999999999986
No 281
>PRK06202 hypothetical protein; Provisional
Probab=96.33 E-value=0.0079 Score=60.44 Aligned_cols=103 Identities=12% Similarity=0.163 Sum_probs=64.7
Q ss_pred CCCCeeeEEecccchhHHHhhhcC---CCeEEEEeccCCCC-CchhHHhhccc-hh--hhcccCCCCCCCCCccchhhcc
Q 007645 438 GTPAIRNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STLSVIYDRGL-IG--VYHDWCEPFSTYPRTYDLIHVS 510 (595)
Q Consensus 438 ~~~~~RnvmDm~~~~g~faa~l~~---~~vwvmnv~p~~~~-~~l~~i~eRGl-ig--~~~~wce~f~typrtyDl~H~~ 510 (595)
...+-..|+|+|||.|.++..|.. +.-...+|+-.|-. +.+..+.++.- .+ ...--++.++.-+.+||+|-++
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEEC
Confidence 334456899999999999877753 11112356666655 66766665521 11 1111123444435899999999
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.+|.+.. +. .+..+|-||-|++| |.+++.|
T Consensus 137 ~~lhh~~------d~-~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 137 HFLHHLD------DA-EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred CeeecCC------hH-HHHHHHHHHHHhcC--eeEEEec
Confidence 8887653 11 24568999999999 5666654
No 282
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.32 E-value=0.025 Score=66.41 Aligned_cols=118 Identities=14% Similarity=0.006 Sum_probs=74.9
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhc------CC-----------------------------------
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE------NI----------------------------------- 223 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~------gv----------------------------------- 223 (595)
.+...+........ ....++|-+||+|++..+.+.. |.
T Consensus 176 tlAaa~l~~a~w~~-~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~ 254 (702)
T PRK11783 176 NLAAAILLRSGWPQ-EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE 254 (702)
T ss_pred HHHHHHHHHcCCCC-CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 34444444433311 2348999999999998776542 00
Q ss_pred ceEEEEeecCcHHHHHHHHHc----CCC--eEEEEcccccCCCC--CCceeEEEEcCCCccccc---CHHHHHHHHHhh-
Q 007645 224 LTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFP--AFSFDIVHCSRCLIPFTA---YNATYLIEVDRL- 291 (595)
Q Consensus 224 ~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~~d~~~LPfp--d~sFDlV~~s~vL~h~~~---d~~~~L~Ei~Rv- 291 (595)
....+.++|+++.+++.|+++ |+. +.+.+.|..+++.+ .++||+|+++--...-.. +...+..++.+.
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~l 334 (702)
T PRK11783 255 LPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRL 334 (702)
T ss_pred cCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHH
Confidence 113689999999999999877 553 57778888877654 357999999864432221 122333333333
Q ss_pred --cCCCcEEEEEcC
Q 007645 292 --LRPGGYLVISGP 303 (595)
Q Consensus 292 --LRPGG~lvls~p 303 (595)
..+|+.+++.++
T Consensus 335 k~~~~g~~~~llt~ 348 (702)
T PRK11783 335 KQQFGGWNAALFSS 348 (702)
T ss_pred HHhCCCCeEEEEeC
Confidence 448988887765
No 283
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.30 E-value=0.027 Score=60.82 Aligned_cols=126 Identities=18% Similarity=0.196 Sum_probs=81.5
Q ss_pred hccccCCCcceEEEECCCCcHHHHHHhhcCCc-eEEEEeecCcHHHHHHHHHc----CCC-eEEEEcccccCC--CC-CC
Q 007645 193 YIPITGGTLRTALDMGCGVASFGGSMLSENIL-TLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLP--FP-AF 263 (595)
Q Consensus 193 ~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~-~~~v~~vD~s~~~l~~A~er----g~~-~~~~~~d~~~LP--fp-d~ 263 (595)
.+...+|. +|||+.++.|+=+.+|++..-. +..++++|.++.-++...++ |.. +.....|...++ .+ .+
T Consensus 151 ~L~p~pge--~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~ 228 (355)
T COG0144 151 VLDPKPGE--RVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGE 228 (355)
T ss_pred HcCCCCcC--EEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccC
Confidence 44445554 9999999999888888877322 34568899999877766554 554 456666665554 22 23
Q ss_pred ceeEEEE------cCCCc-------cccc--------CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHH
Q 007645 264 SFDIVHC------SRCLI-------PFTA--------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVAR 322 (595)
Q Consensus 264 sFDlV~~------s~vL~-------h~~~--------d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~ 322 (595)
.||.|+. ..++. .+.. -...+|..+.++|||||.++.++-.....+++ ..++.+++
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE---~vV~~~L~ 305 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENE---EVVERFLE 305 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCH---HHHHHHHH
Confidence 5999996 22221 1110 12277999999999999999999755444433 33445554
Q ss_pred H
Q 007645 323 A 323 (595)
Q Consensus 323 ~ 323 (595)
+
T Consensus 306 ~ 306 (355)
T COG0144 306 R 306 (355)
T ss_pred h
Confidence 3
No 284
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.30 E-value=0.009 Score=59.57 Aligned_cols=132 Identities=16% Similarity=0.243 Sum_probs=66.2
Q ss_pred eeEEecccchhHHHhhhcCC-----CeEEEEeccCCCCCchhHHhhccchhhhcccCC---------CCCCCCCccchhh
Q 007645 443 RNIMDMNAFFGGFAAALTSD-----PVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCE---------PFSTYPRTYDLIH 508 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-----~vwvmnv~p~~~~~~l~~i~eRGlig~~~~wce---------~f~typrtyDl~H 508 (595)
.+|||+|||.|+|+..|.+. .|..+-+.|... + .|+.-+-.|..+ .+. +.+||+|-
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~---~-----~~v~~i~~D~~~~~~~~~i~~~~~--~~~~D~V~ 122 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDP---I-----VGVDFLQGDFRDELVLKALLERVG--DSKVQVVM 122 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccC---C-----CCcEEEecCCCChHHHHHHHHHhC--CCCCCEEe
Confidence 47999999999998766442 244444433111 1 121111122221 122 26789988
Q ss_pred ccCccccccCCCCC--CCCCChhhhHHhhcccccCCcEEEEeC-----ChHHHHHHHHhHhccCceeEEeccCCCCCCCc
Q 007645 509 VSGIESLIKNPGSN--KNSCSLVDLMVEMDRMLRPEGTVVVRD-----SPEVIDKVSRIANTVRWTAAVHDKEPGSNGRE 581 (595)
Q Consensus 509 ~~~~~s~~~~~~~~--~~~c~~~~~llEmdRiLRP~G~~i~rd-----~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~ 581 (595)
++......-++... ..-...+.+|-|+=|+|+|||.+++.. -.+++..+++.-..... ..+.-.-....|
T Consensus 123 S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~---~Kp~ssr~~s~e 199 (209)
T PRK11188 123 SDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKV---RKPDSSRARSRE 199 (209)
T ss_pred cCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEE---ECCccccccCce
Confidence 75432211000000 000113568999999999999999942 23344443332222222 223333344467
Q ss_pred eEEEEE
Q 007645 582 KILVAT 587 (595)
Q Consensus 582 ~~l~~~ 587 (595)
..+||.
T Consensus 200 ~~~~~~ 205 (209)
T PRK11188 200 VYIVAT 205 (209)
T ss_pred eEEEee
Confidence 777765
No 285
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.26 E-value=0.0041 Score=62.57 Aligned_cols=140 Identities=16% Similarity=0.197 Sum_probs=94.9
Q ss_pred CCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccchhh-hcccCCCCC--CCCCccchhhccCcc
Q 007645 438 GTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGV-YHDWCEPFS--TYPRTYDLIHVSGIE 513 (595)
Q Consensus 438 ~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~-~~~wce~f~--typrtyDl~H~~~~~ 513 (595)
..+.+|.++|.|||+|=++-+|.+.- =-+.=+|-+ |-|-.+.|+|+--+ +|-=-..|. +=++-+|||-|..+|
T Consensus 122 ~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl 198 (287)
T COG4976 122 DLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVL 198 (287)
T ss_pred cCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHH
Confidence 45669999999999999999987620 012223334 88999999996322 221112255 467899999999999
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh----------------HHHHHHHHhHhccCceeEEec-----
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP----------------EVIDKVSRIANTVRWTAAVHD----- 572 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~----------------~~~~~~~~~~~~~~W~~~~~~----- 572 (595)
+-. -.++.++.=.++.|.|||.|+++-+. .--..|..+..+---++..+.
T Consensus 199 ~Yl---------G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR 269 (287)
T COG4976 199 PYL---------GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIR 269 (287)
T ss_pred Hhh---------cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccch
Confidence 843 67899999999999999999998211 012346666665555554431
Q ss_pred cCCCCCCCceEEEEEec
Q 007645 573 KEPGSNGREKILVATKS 589 (595)
Q Consensus 573 ~~~~~~~~~~~l~~~K~ 589 (595)
.+.+.-.+..++|++|+
T Consensus 270 ~d~g~pv~G~L~iark~ 286 (287)
T COG4976 270 RDAGEPVPGILVIARKK 286 (287)
T ss_pred hhcCCCCCCceEEEecC
Confidence 23344455677888875
No 286
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=96.20 E-value=0.011 Score=57.47 Aligned_cols=132 Identities=14% Similarity=0.199 Sum_probs=68.4
Q ss_pred eeEEecccchhHHHhhhcCC-----CeEEEEeccCCCCCchhHHhhccchhhhcccCCCC------CCCC-Cccchhhcc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-----PVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPF------STYP-RTYDLIHVS 510 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-----~vwvmnv~p~~~~~~l~~i~eRGlig~~~~wce~f------~typ-rtyDl~H~~ 510 (595)
.+|||+|||.|+++.++..+ .|+..=+.|.. . + .|+--+..|..+.. ..+| .+||+|=++
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~--~-~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----P--I-ENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----c--C-CCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 58999999999997766432 25544333321 0 0 12211222433321 0123 578887765
Q ss_pred Ccc--c-cccCCCCCCCCCChhhhHHhhcccccCCcEEEEe-CC----hHHHHHHHHhHhccCceeEEe-ccCCCCCCCc
Q 007645 511 GIE--S-LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DS----PEVIDKVSRIANTVRWTAAVH-DKEPGSNGRE 581 (595)
Q Consensus 511 ~~~--s-~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r-d~----~~~~~~~~~~~~~~~W~~~~~-~~~~~~~~~~ 581 (595)
... + .|. .......+.++.+|-++-|+|||||.+++- .. .++++++++ .+ |+..+. |.-......|
T Consensus 106 ~~~~~~g~~~-~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~---~~-~~~~~~~~~~~~~~~~~ 180 (188)
T TIGR00438 106 AAPNISGYWD-IDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK---LF-EKVKVTKPQASRKRSAE 180 (188)
T ss_pred CCCCCCCCcc-ccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh---hh-ceEEEeCCCCCCcccce
Confidence 431 1 010 000001123467899999999999999993 11 233433333 32 444443 3333344567
Q ss_pred eEEEEE
Q 007645 582 KILVAT 587 (595)
Q Consensus 582 ~~l~~~ 587 (595)
+.+||.
T Consensus 181 ~~~~~~ 186 (188)
T TIGR00438 181 VYIVAK 186 (188)
T ss_pred EEEEEe
Confidence 777774
No 287
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=96.20 E-value=0.0042 Score=58.16 Aligned_cols=96 Identities=18% Similarity=0.300 Sum_probs=62.3
Q ss_pred eeEEecccchhHHHhhhcC---CCeEEEEeccCCCC-CchhHHhh----ccch--hhh-cccCCCCCC-CCCccchhhcc
Q 007645 443 RNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STLSVIYD----RGLI--GVY-HDWCEPFST-YPRTYDLIHVS 510 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~---~~vwvmnv~p~~~~-~~l~~i~e----RGli--g~~-~~wce~f~t-yprtyDl~H~~ 510 (595)
-+|||+|||.|-++-.|.+ ...=++.| |-. .-+..+-+ .|+- =.+ .|.-+ ++. |+..||+|.+.
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gv---D~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGV---DISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISN 80 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEE---ESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEE---ECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEc
Confidence 4799999999999988873 12323333 333 44444433 3442 111 22222 221 44789999999
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP 551 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~ 551 (595)
+.+.+. .....+|-+|=|.|+|+|.+++.+-.
T Consensus 81 ~~l~~~---------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHF---------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGT---------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhhc---------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 888432 56678899999999999999998765
No 288
>PRK14967 putative methyltransferase; Provisional
Probab=96.18 E-value=0.0092 Score=59.75 Aligned_cols=124 Identities=15% Similarity=0.164 Sum_probs=67.0
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhh----ccch--hhhcccCCCCCCCCCccchhhccCcccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGLI--GVYHDWCEPFSTYPRTYDLIHVSGIESL 515 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGli--g~~~~wce~f~typrtyDl~H~~~~~s~ 515 (595)
..|+|+|||.|.++..+..... -+|+-.|-. ..+..+-+ .|+- -+-.|+.+.+. ...||+|.++--|..
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE--FRPFDVVVSNPPYVP 113 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc--CCCeeEEEECCCCCC
Confidence 4799999999999888866432 133333432 44443222 2331 11234444332 268999998754432
Q ss_pred ccCC------------CCCCCCCChhhhHHhhcccccCCcEEEEe-CChHHHHHHHHhHhccCceeEE
Q 007645 516 IKNP------------GSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIANTVRWTAAV 570 (595)
Q Consensus 516 ~~~~------------~~~~~~c~~~~~llEmdRiLRP~G~~i~r-d~~~~~~~~~~~~~~~~W~~~~ 570 (595)
-... ........+..++-++-|+|+|||.+++- .+.....++.+++++-.|++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 181 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEV 181 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEE
Confidence 1100 00001122456778899999999999983 2211234444555544554433
No 289
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.15 E-value=0.054 Score=54.45 Aligned_cols=120 Identities=18% Similarity=0.130 Sum_probs=75.9
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHH----HcCCC-eEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFAL----ERGIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~----erg~~-~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
.+++|||+|.|.=+.-|+=.. ....++-+|....-+.|-+ +-+++ +.++...++.+.-....||+|+|..+-
T Consensus 69 ~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-- 145 (215)
T COG0357 69 KRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-- 145 (215)
T ss_pred CEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence 599999999995555544221 2234777888776665543 34766 888888788775322229999986543
Q ss_pred cccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 277 FTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 277 ~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
....++.-....+|+||.++..- +..-...+.+.+......++.....
T Consensus 146 ---~L~~l~e~~~pllk~~g~~~~~k----~~~~~~e~~e~~~a~~~~~~~~~~~ 193 (215)
T COG0357 146 ---SLNVLLELCLPLLKVGGGFLAYK----GLAGKDELPEAEKAILPLGGQVEKV 193 (215)
T ss_pred ---chHHHHHHHHHhcccCCcchhhh----HHhhhhhHHHHHHHHHhhcCcEEEE
Confidence 45567777888999999876421 1111223555666666666666543
No 290
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.14 E-value=0.024 Score=59.33 Aligned_cols=100 Identities=18% Similarity=0.200 Sum_probs=67.9
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC---CeEEEEccccc-CC--CCCCceeEEEEc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI---PAFVAMLGTRR-LP--FPAFSFDIVHCS 271 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~---~~~~~~~d~~~-LP--fpd~sFDlV~~s 271 (595)
++|||+=|=||+|+.+.+..|. .+++.+|.|..+++.|+++ ++ ...+...|+.. +. -..+.||+|++-
T Consensus 125 krvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp CEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 4999999999999999887763 3677889999999999876 43 35677777533 11 124689999982
Q ss_pred C---CCc--ccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 272 R---CLI--PFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 272 ~---vL~--h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
- .-. ....+...++..+.++|+|||.++++..
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 1 111 1112345778889999999999988765
No 291
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=96.11 E-value=0.01 Score=58.99 Aligned_cols=97 Identities=23% Similarity=0.252 Sum_probs=55.6
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cc---hhhh-cccCCCCCCCCCccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL---IGVY-HDWCEPFSTYPRTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig~~-~~wce~f~typrtyDl~H~~~~~ 513 (595)
..|+|+|||.|.++..+...--=.-.|+-.|-. +.+..+-++ ++ +-.+ .|.. .++.=+.+||+|.++.++
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~I~~~~~l 131 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAE-ALPFPDNSFDAVTIAFGL 131 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccc-cCCCCCCCccEEEEeccc
Confidence 469999999999987774321000122222322 333332222 11 1111 1111 112113689999987665
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
- +..+...+|-++-++|+|||.+++.+
T Consensus 132 ~---------~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 132 R---------NVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred c---------cCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 4 33567789999999999999999853
No 292
>PRK06922 hypothetical protein; Provisional
Probab=96.10 E-value=0.0049 Score=70.70 Aligned_cols=106 Identities=17% Similarity=0.188 Sum_probs=61.6
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhc----cc-hhhhcccCCCCCC-C-CCccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GL-IGVYHDWCEPFST-Y-PRTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig~~~~wce~f~t-y-prtyDl~H~~~~~ 513 (595)
.+|+|+|||.|.++.+|... | ..+|+-.|-. +.|..+-+| |. +-+++.=+..++. + |.+||+|.++.++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P--~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETE--DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 47999999999998777532 2 1244444443 444444333 11 1111111223332 3 3899999987665
Q ss_pred ccccC--CC--CCCCCCChhhhHHhhcccccCCcEEEEeCC
Q 007645 514 SLIKN--PG--SNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 550 (595)
Q Consensus 514 s~~~~--~~--~~~~~c~~~~~llEmdRiLRP~G~~i~rd~ 550 (595)
-.+-+ |. ...+.-.+..+|-|+-|+|+|||.+++.|.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 43310 00 000123456899999999999999999873
No 293
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=95.99 E-value=0.052 Score=57.02 Aligned_cols=145 Identities=19% Similarity=0.222 Sum_probs=91.7
Q ss_pred HHHHHHHHhhccccCC--CcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHH---HHHHHcC-------------
Q 007645 184 DKYIDKLKQYIPITGG--TLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQI---QFALERG------------- 245 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g--~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l---~~A~erg------------- 245 (595)
..+++.|..+.+.... +.-+||-=|||.|.++..|+..|. ..-+.+.|--|+ .+++...
T Consensus 132 kpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~---~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh 208 (369)
T KOG2798|consen 132 KPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF---KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIH 208 (369)
T ss_pred hhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc---cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeee
Confidence 3457777777775322 234799999999999999998865 344556665554 2333110
Q ss_pred --------------C--C-e----------EE--EEccccc-CC--CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcC
Q 007645 246 --------------I--P-A----------FV--AMLGTRR-LP--FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLR 293 (595)
Q Consensus 246 --------------~--~-~----------~~--~~~d~~~-LP--fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLR 293 (595)
+ + + .+ ..+|..+ .+ -..++||+|+..+-+ .-..+.-.+|..|..+|+
T Consensus 209 ~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFI-DTa~NileYi~tI~~iLk 287 (369)
T KOG2798|consen 209 QYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFI-DTAHNILEYIDTIYKILK 287 (369)
T ss_pred ccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEe-echHHHHHHHHHHHHhcc
Confidence 0 0 0 00 0011000 01 112469999977533 544566689999999999
Q ss_pred CCcEEEEEcCCCCCCCC----------chhHHHHHHHHHHcCcEEEEee
Q 007645 294 PGGYLVISGPPVQWPKQ----------DKEWADLQAVARALCYELIAVD 332 (595)
Q Consensus 294 PGG~lvls~p~~~~~~~----------~~~w~~l~~la~~~~w~~v~~~ 332 (595)
|||+++=.+|-.+.-.. +...+.+..+++.++|+++..+
T Consensus 288 ~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 288 PGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 99999988884332222 1237779999999999999876
No 294
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=95.94 E-value=0.0066 Score=63.72 Aligned_cols=103 Identities=13% Similarity=0.211 Sum_probs=62.5
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCC-CeEEEEeccCCCCCchhHH----hhccchhhhcccCCCCC--CCCCccchhhc
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKSSTLSVI----YDRGLIGVYHDWCEPFS--TYPRTYDLIHV 509 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~~~l~~i----~eRGlig~~~~wce~f~--typrtyDl~H~ 509 (595)
+.....+.|+|+|||.|.++.++.+. |-. +++-.|-+..+..+ -+.|+-.-++-.+.-|- .+| .+|++-.
T Consensus 145 ~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~--~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~ 221 (306)
T TIGR02716 145 AKLDGVKKMIDVGGGIGDISAAMLKHFPEL--DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLF 221 (306)
T ss_pred cCCCCCCEEEEeCCchhHHHHHHHHHCCCC--EEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEe
Confidence 34455689999999999999888654 321 23333434444433 34455332222222222 355 4798766
Q ss_pred cCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 510 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 510 ~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.+++-.|. .-....+|-++-|.|+|||.++|-|
T Consensus 222 ~~~lh~~~-------~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 222 CRILYSAN-------EQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred EhhhhcCC-------hHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 66555442 1123458889999999999999874
No 295
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=95.88 E-value=0.035 Score=57.18 Aligned_cols=103 Identities=15% Similarity=0.083 Sum_probs=73.9
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc---CCCeEEEEcccccCC
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER---GIPAFVAMLGTRRLP 259 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er---g~~~~~~~~d~~~LP 259 (595)
....++.|.+.+....+. .|||||+|.|.++..|++.+ ..+..+|.++...+..+++ ..++.++..|...+.
T Consensus 15 ~~~~~~~Iv~~~~~~~~~--~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~ 89 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGD--TVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWD 89 (262)
T ss_dssp HHHHHHHHHHHHTCGTTS--EEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSC
T ss_pred CHHHHHHHHHhcCCCCCC--EEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhcccceeeecchhccc
Confidence 456777888877665444 99999999999999999986 4777889999999988885 346888888887776
Q ss_pred CCC---CceeEEEEcCCCcccccCHHHHHHHHHhhcCC
Q 007645 260 FPA---FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRP 294 (595)
Q Consensus 260 fpd---~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRP 294 (595)
.++ +....|+++--. + -...++..+...-+.
T Consensus 90 ~~~~~~~~~~~vv~NlPy-~---is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 90 LYDLLKNQPLLVVGNLPY-N---ISSPILRKLLELYRF 123 (262)
T ss_dssp GGGHCSSSEEEEEEEETG-T---GHHHHHHHHHHHGGG
T ss_pred cHHhhcCCceEEEEEecc-c---chHHHHHHHhhcccc
Confidence 554 456677776322 1 234566666654343
No 296
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.88 E-value=0.0047 Score=61.60 Aligned_cols=87 Identities=18% Similarity=0.176 Sum_probs=49.7
Q ss_pred eeEEecccchhHHHhhhcCC-----CeEEEEeccCCCCCchhHHhh----ccchhhhcccCCCCCCCC--CccchhhccC
Q 007645 443 RNIMDMNAFFGGFAAALTSD-----PVWVMNVVPARKSSTLSVIYD----RGLIGVYHDWCEPFSTYP--RTYDLIHVSG 511 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-----~vwvmnv~p~~~~~~l~~i~e----RGlig~~~~wce~f~typ--rtyDl~H~~~ 511 (595)
..|+|+|||.|.+++.|... .|..+-+-| .-+.++-+ -|+-.+---....+..+| ..||+|++..
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~----~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIP----ELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA 153 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCH----HHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC
Confidence 58999999999999777432 344443322 22322222 132111111223333443 6899999654
Q ss_pred ccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 512 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 512 ~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
.+. .+.-++-+.|+|||.+++-
T Consensus 154 ~~~---------------~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 154 AGP---------------DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred Ccc---------------cchHHHHHhhCCCcEEEEE
Confidence 433 2334555689999999884
No 297
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=95.85 E-value=0.012 Score=64.00 Aligned_cols=121 Identities=16% Similarity=0.094 Sum_probs=69.9
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-----CchhHHhhccchh---hhcccCCCCCCCC-CccchhhccCc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-----STLSVIYDRGLIG---VYHDWCEPFSTYP-RTYDLIHVSGI 512 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-----~~l~~i~eRGlig---~~~~wce~f~typ-rtyDl~H~~~~ 512 (595)
..++|+|||.|.|..+|... |= -||+-.+-. ..+.-+-++||-. +..|--+-+...| .++|.|+....
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~--~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPN--KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCC--CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 57999999999999999643 11 133333322 2223344556421 1222211122234 79999986421
Q ss_pred cccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe-CChHHHHHHHHhHhcc-Ccee
Q 007645 513 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIANTV-RWTA 568 (595)
Q Consensus 513 ~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r-d~~~~~~~~~~~~~~~-~W~~ 568 (595)
.+|. ...-.|=-...+|-|+=|+|+|||.+.++ |..+..+.+.+..... +++.
T Consensus 202 -dPW~--KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 202 -VPWD--KKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred -CCcc--ccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 2342 11112222368999999999999999986 6666666666654443 4444
No 298
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=95.83 E-value=0.0069 Score=64.91 Aligned_cols=115 Identities=11% Similarity=0.020 Sum_probs=69.1
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhccc---hhhhcccCCCCCCCCCccchhhccCcccccc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGL---IGVYHDWCEPFSTYPRTYDLIHVSGIESLIK 517 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eRGl---ig~~~~wce~f~typrtyDl~H~~~~~s~~~ 517 (595)
..|||+|||.|.++..+.+. +- -+|+=.|.. +.+..+-++.- +-.++.-.+.++.-..+||+|-+...+.++.
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 47999999999988777442 11 133434433 55555555421 1111111122222237999998877776553
Q ss_pred CCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh--H---------------HHHHHHHhHhccCcee
Q 007645 518 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP--E---------------VIDKVSRIANTVRWTA 568 (595)
Q Consensus 518 ~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~--~---------------~~~~~~~~~~~~~W~~ 568 (595)
+.+.+|-|+-|+|+|||.+++.+.. + -.+++.+++++.-++.
T Consensus 193 ---------d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~ 251 (340)
T PLN02490 193 ---------DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKD 251 (340)
T ss_pred ---------CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeE
Confidence 3356899999999999999875321 0 1355666666666654
No 299
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=95.81 E-value=0.0093 Score=61.20 Aligned_cols=132 Identities=15% Similarity=0.120 Sum_probs=78.4
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhh----ccchhhhcccCCCCCC-CCCccchhhccCcccc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYD----RGLIGVYHDWCEPFST-YPRTYDLIHVSGIESL 515 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGlig~~~~wce~f~t-yprtyDl~H~~~~~s~ 515 (595)
.+|+|+|||.|.++-+|... +- .+|+-.|.. ..+..+-+ -|+--.-.|+.+.++. ....||+|=++--+..
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~--~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDG--IELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 47999999999999887532 21 133334433 44443322 1321122344443321 2346899877654432
Q ss_pred ccC-----CCC--CCCCCC----------hhhhHHhhcccccCCcEEEEeCChHHHHHHHHhHhccCceeEEeccCCC
Q 007645 516 IKN-----PGS--NKNSCS----------LVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPG 576 (595)
Q Consensus 516 ~~~-----~~~--~~~~c~----------~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~~~~~W~~~~~~~~~~ 576 (595)
... |.. ...+.. +.+++-...++|+|||.+++--..+...++..++....|+..+..|++.
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEcccc
Confidence 110 000 001111 2377788889999999999865555677888888888898888877765
No 300
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=95.79 E-value=0.0048 Score=60.94 Aligned_cols=96 Identities=17% Similarity=0.196 Sum_probs=63.3
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-Cc-hhHHhhccchhhhcccCCCCCC--CCCccchhhccCccccccC
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-ST-LSVIYDRGLIGVYHDWCEPFST--YPRTYDLIHVSGIESLIKN 518 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~-l~~i~eRGlig~~~~wce~f~t--yprtyDl~H~~~~~s~~~~ 518 (595)
-.|||+|||-|-=|-+|.++..=|.-|=-.... +. ..++-++||- ++.++.-+.+ +|..||+|-+..+|-..
T Consensus 32 g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~st~v~~fL-- 107 (192)
T PF03848_consen 32 GKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIVSTVVFMFL-- 107 (192)
T ss_dssp SEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEEEESSGGGS--
T ss_pred CcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEEEEEEeccC--
Confidence 379999999999999998776544333222211 22 3355567774 3444443333 56899999987777654
Q ss_pred CCCCCCCCChhhhHHhhcccccCCcEEEE
Q 007645 519 PGSNKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 519 ~~~~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
++-.+..|+--|-.-++||||+++
T Consensus 108 -----~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 108 -----QRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp ------GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred -----CHHHHHHHHHHHHhhcCCcEEEEE
Confidence 555677899999999999999988
No 301
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=95.73 E-value=0.008 Score=58.77 Aligned_cols=87 Identities=17% Similarity=0.218 Sum_probs=53.8
Q ss_pred eEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccchhhhcccCCCCCCCC-CccchhhccCccccccCCCC
Q 007645 444 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYP-RTYDLIHVSGIESLIKNPGS 521 (595)
Q Consensus 444 nvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~wce~f~typ-rtyDl~H~~~~~s~~~~~~~ 521 (595)
+|+|+|||.|.++.+|.+..-. ++.-.|.. ..+..+.++|+--+..|..+.++.++ ++||+|-++..|.+..
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~--~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~---- 89 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQV--RGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR---- 89 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCC--cEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc----
Confidence 7999999999999998643211 12222322 45555556664323334333333354 7999999998886543
Q ss_pred CCCCCChhhhHHhhcccccC
Q 007645 522 NKNSCSLVDLMVEMDRMLRP 541 (595)
Q Consensus 522 ~~~~c~~~~~llEmdRiLRP 541 (595)
+...+|-||-|++++
T Consensus 90 -----d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 90 -----NPEEILDEMLRVGRH 104 (194)
T ss_pred -----CHHHHHHHHHHhCCe
Confidence 355677777666554
No 302
>PRK04457 spermidine synthase; Provisional
Probab=95.72 E-value=0.036 Score=57.24 Aligned_cols=139 Identities=15% Similarity=0.116 Sum_probs=73.5
Q ss_pred CCeeeEEecccchhHHHhhhcCC-CeEEEEeccCCC-CCchhHHhhc-cchh-------hhcccCCCCCCCCCccchhhc
Q 007645 440 PAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARK-SSTLSVIYDR-GLIG-------VYHDWCEPFSTYPRTYDLIHV 509 (595)
Q Consensus 440 ~~~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~-~~~l~~i~eR-Glig-------~~~~wce~f~typrtyDl~H~ 509 (595)
..-++|+|+|||.|+++.+|... |- +.|.-.+- +..+.++-+. ++.+ +..|--+-+.+.|.+||+|=.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPD--TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 44678999999999999877542 32 22333332 2444444333 1111 011211112345678999965
Q ss_pred cCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEE---eCChHHHHHHHHhHhccCceeEEeccCCCCCCCceEEEE
Q 007645 510 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV---RDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVA 586 (595)
Q Consensus 510 ~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~---rd~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~l~~ 586 (595)
+. |.... .........++-++=++|+|||.+++ ..+...-..++.+...+.-.+.+...+ ...+.|+++
T Consensus 143 D~-~~~~~----~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~---~~~N~v~~a 214 (262)
T PRK04457 143 DG-FDGEG----IIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAE---SHGNVAVFA 214 (262)
T ss_pred eC-CCCCC----CccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecC---CCccEEEEE
Confidence 42 32110 01112245788999999999999997 333333333444444443333333221 123567888
Q ss_pred Ee
Q 007645 587 TK 588 (595)
Q Consensus 587 ~K 588 (595)
.|
T Consensus 215 ~~ 216 (262)
T PRK04457 215 FK 216 (262)
T ss_pred EC
Confidence 77
No 303
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=95.62 E-value=0.08 Score=53.04 Aligned_cols=112 Identities=15% Similarity=0.134 Sum_probs=77.4
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC----CeEEEEccccc-C
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI----PAFVAMLGTRR-L 258 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~----~~~~~~~d~~~-L 258 (595)
..+.+.+++.+..+ +++||.||-|-|.....+.++.+. .-.-++.++..++.-++.|. ++.+..+--++ +
T Consensus 88 tpiMha~A~ai~tk---ggrvLnVGFGMgIidT~iQe~~p~--~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl 162 (271)
T KOG1709|consen 88 TPIMHALAEAISTK---GGRVLNVGFGMGIIDTFIQEAPPD--EHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVL 162 (271)
T ss_pred hHHHHHHHHHHhhC---CceEEEeccchHHHHHHHhhcCCc--ceEEEecCHHHHHHHHhcccccccceEEEecchHhhh
Confidence 34556666666533 348999999999999888888553 23346889999988888764 23333332111 1
Q ss_pred -CCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEE
Q 007645 259 -PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 259 -Pfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls 301 (595)
.++|+.||-|.--.--++. ++.-.+.+.+.|+|||+|+|-+.
T Consensus 163 ~~L~d~~FDGI~yDTy~e~y-Edl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 163 NTLPDKHFDGIYYDTYSELY-EDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred ccccccCcceeEeechhhHH-HHHHHHHHHHhhhcCCCceEEEe
Confidence 2578999999864332333 46667888999999999999875
No 304
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=95.56 E-value=0.06 Score=56.24 Aligned_cols=163 Identities=17% Similarity=0.202 Sum_probs=94.9
Q ss_pred hhhhhhhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHH----hhccchh
Q 007645 415 FEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVI----YDRGLIG 488 (595)
Q Consensus 415 f~~d~~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i----~eRGlig 488 (595)
...||+.+-..+..- +. ..+. +|+|||||.|--|.+|... |. .+|+-+|-. .-|.++ -.-|+.-
T Consensus 92 Pr~dTe~Lve~~l~~---~~---~~~~--~ilDlGTGSG~iai~la~~~~~--~~V~a~Dis~~Al~~A~~Na~~~~l~~ 161 (280)
T COG2890 92 PRPDTELLVEAALAL---LL---QLDK--RILDLGTGSGAIAIALAKEGPD--AEVIAVDISPDALALARENAERNGLVR 161 (280)
T ss_pred cCCchHHHHHHHHHh---hh---hcCC--cEEEecCChHHHHHHHHhhCcC--CeEEEEECCHHHHHHHHHHHHHcCCcc
Confidence 345777777776511 11 1122 9999999999999999543 33 456666644 555543 3335422
Q ss_pred hhcccCCCCCCCCCccchhhccCcccccc-----------CCC--CCCCCCC---hhhhHHhhcccccCCcEEEEeCChH
Q 007645 489 VYHDWCEPFSTYPRTYDLIHVSGIESLIK-----------NPG--SNKNSCS---LVDLMVEMDRMLRPEGTVVVRDSPE 552 (595)
Q Consensus 489 ~~~~wce~f~typrtyDl~H~~~~~s~~~-----------~~~--~~~~~c~---~~~~llEmdRiLRP~G~~i~rd~~~ 552 (595)
++.--+.-|+-.+.+||+|=++=-...-. +|. .-..... +..++-+..++|+|||++++.-...
T Consensus 162 ~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~ 241 (280)
T COG2890 162 VLVVQSDLFEPLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT 241 (280)
T ss_pred EEEEeeecccccCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC
Confidence 12212234555555899987665443221 010 0011122 2378888999999999999987766
Q ss_pred HHHHHHHhHhccCceeEEeccCCCCCCCceEEEEEe
Q 007645 553 VIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATK 588 (595)
Q Consensus 553 ~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~l~~~K 588 (595)
--+.|+++.....+ .........-.+.+.+++.++
T Consensus 242 q~~~v~~~~~~~~~-~~~v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 242 QGEAVKALFEDTGF-FEIVETLKDLFGRDRVVLAKL 276 (280)
T ss_pred cHHHHHHHHHhcCC-ceEEEEEecCCCceEEEEEEe
Confidence 67888888888885 222222223344566666554
No 305
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=95.55 E-value=0.068 Score=55.67 Aligned_cols=141 Identities=18% Similarity=0.247 Sum_probs=80.9
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhc----cch----hhhcccCCCCCCCCCccchhhccCc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GLI----GVYHDWCEPFSTYPRTYDLIHVSGI 512 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gli----g~~~~wce~f~typrtyDl~H~~~~ 512 (595)
..|+|+|||.|.++.+|... +- .+|+-.|-. ..+.++-+. |+- =.-.||.+++.. ..||+|=++--
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~--~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPN--AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG--QKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC--CCccEEEECCC
Confidence 47999999999999888653 21 134445543 455544432 331 123567665532 37999876532
Q ss_pred cccccC-----------CC----CCCCC-CChhhhHHhhcccccCCcEEEEeCChHHHHHHHHhHh-ccCceeEEeccCC
Q 007645 513 ESLIKN-----------PG----SNKNS-CSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIAN-TVRWTAAVHDKEP 575 (595)
Q Consensus 513 ~s~~~~-----------~~----~~~~~-c~~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~~-~~~W~~~~~~~~~ 575 (595)
+..-.+ |. +..+. -.+..++-+.-+.|+|||++++--....-+.++++.. ...|..... ..|
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~-~~D 270 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVEN-GRD 270 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEE-ecC
Confidence 221100 00 00000 0234678889999999999999755555567777665 455643222 122
Q ss_pred CCCCCceEEEEEec
Q 007645 576 GSNGREKILVATKS 589 (595)
Q Consensus 576 ~~~~~~~~l~~~K~ 589 (595)
-.+.++++++++.
T Consensus 271 -~~g~~R~~~~~~~ 283 (284)
T TIGR00536 271 -LNGKERVVLGFYH 283 (284)
T ss_pred -CCCCceEEEEEec
Confidence 3346788887653
No 306
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=95.47 E-value=0.015 Score=57.90 Aligned_cols=86 Identities=20% Similarity=0.217 Sum_probs=49.8
Q ss_pred eeEEecccchhHHHhhhcCC--C---eEEEEeccCCCCCchhHH----hhccc---hhhhcccCCCCCCCCCccchhhcc
Q 007645 443 RNIMDMNAFFGGFAAALTSD--P---VWVMNVVPARKSSTLSVI----YDRGL---IGVYHDWCEPFSTYPRTYDLIHVS 510 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~--~---vwvmnv~p~~~~~~l~~i----~eRGl---ig~~~~wce~f~typrtyDl~H~~ 510 (595)
..|||+|||.|.+++.|... + |...-.-| .-+..+ -+.|+ .-+..|..+.+.. ...||+|+++
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~----~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~-~~~fD~Ii~~ 153 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIP----ELAEKAERRLRKLGLDNVIVIVGDGTQGWEP-LAPYDRIYVT 153 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCH----HHHHHHHHHHHHCCCCCeEEEECCcccCCcc-cCCCCEEEEc
Confidence 47999999999999988543 2 44332222 233322 22343 1112233332222 2589999965
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
.... .+.-++-+.|+|||.+|+-
T Consensus 154 ~~~~---------------~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 154 AAGP---------------KIPEALIDQLKEGGILVMP 176 (215)
T ss_pred CCcc---------------cccHHHHHhcCcCcEEEEE
Confidence 4432 2334566789999999884
No 307
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.47 E-value=0.16 Score=55.07 Aligned_cols=115 Identities=14% Similarity=0.009 Sum_probs=77.9
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCce-------------------------------E-------EE
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILT-------------------------------L-------SF 228 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~-------------------------------~-------~v 228 (595)
...|..+.....+ ..++|-=||+|+++.+.+-.+... . .+
T Consensus 180 AaAil~lagw~~~--~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~ 257 (381)
T COG0116 180 AAAILLLAGWKPD--EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII 257 (381)
T ss_pred HHHHHHHcCCCCC--CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence 3344444444443 489999999999998776553210 0 26
Q ss_pred EeecCcHHHHHHHHHc----CCC--eEEEEcccccCCCCCCceeEEEEcCCCcccccC---HH----HHHHHHHhhcCCC
Q 007645 229 APRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY---NA----TYLIEVDRLLRPG 295 (595)
Q Consensus 229 ~~vD~s~~~l~~A~er----g~~--~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d---~~----~~L~Ei~RvLRPG 295 (595)
.+.|+++.+++.|+.+ |+. +.|.++|+..++-+-+.+|+|+|+--.-.-..+ .+ .+...+.+.++--
T Consensus 258 ~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~w 337 (381)
T COG0116 258 YGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGW 337 (381)
T ss_pred EEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCC
Confidence 7999999999999876 554 788999998886444789999998533111111 11 3445666777778
Q ss_pred cEEEEEcC
Q 007645 296 GYLVISGP 303 (595)
Q Consensus 296 G~lvls~p 303 (595)
+.+++++.
T Consensus 338 s~~v~tt~ 345 (381)
T COG0116 338 SRYVFTTS 345 (381)
T ss_pred ceEEEEcc
Confidence 88888875
No 308
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=95.42 E-value=0.024 Score=56.40 Aligned_cols=100 Identities=7% Similarity=0.026 Sum_probs=64.1
Q ss_pred eeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccchhh----hcccCCCCCCCCCccchhhccCccccc
Q 007645 442 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGV----YHDWCEPFSTYPRTYDLIHVSGIESLI 516 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~----~~~wce~f~typrtyDl~H~~~~~s~~ 516 (595)
-..|+|+|||.|.|+.+|.+... .|+=.|-. +.+..+.+|---.. ..=.+..+..-|.+||+|=+..++.++
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~ 132 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHY 132 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhC
Confidence 46899999999999999987643 34444544 56666655531110 111112222334789988776666544
Q ss_pred cCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh
Q 007645 517 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP 551 (595)
Q Consensus 517 ~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~ 551 (595)
..-.+..++-++.|+++|++++.+....
T Consensus 133 -------~~~~~~~~l~~i~~~~~~~~~i~~~~~~ 160 (219)
T TIGR02021 133 -------PASDMAKALGHLASLTKERVIFTFAPKT 160 (219)
T ss_pred -------CHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 2234677899999999998888876443
No 309
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.39 E-value=0.049 Score=58.70 Aligned_cols=67 Identities=16% Similarity=0.243 Sum_probs=45.1
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEccccc
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRR 257 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~ 257 (595)
..++.+.+.+.... .+|||+-||+|.|+..|++.. -.+.++|+++++++.|+++ ++ ++.+..+++++
T Consensus 184 ~l~~~~~~~l~~~~---~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 184 KLYEQALEWLDLSK---GDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHHHHCTT-T---TEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred HHHHHHHHHhhcCC---CcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 33555566665442 269999999999999999873 3788889999999988765 44 46777665443
No 310
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=95.38 E-value=0.018 Score=57.20 Aligned_cols=100 Identities=13% Similarity=0.113 Sum_probs=61.9
Q ss_pred eeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchhhhcccCCCCCCCCCccchhhccCccccc
Q 007645 442 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFSTYPRTYDLIHVSGIESLI 516 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~wce~f~typrtyDl~H~~~~~s~~ 516 (595)
-.+|||+|||.|.|+.+|.+... .|.-.|.. +-+..+-++ |+-..++-....+..-+.+||+|-+..++.++
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~~ 140 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIHY 140 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhcC
Confidence 46899999999999999976542 24444433 555555443 22111111112233334789999998888765
Q ss_pred cCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh
Q 007645 517 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP 551 (595)
Q Consensus 517 ~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~ 551 (595)
. .-.+..++-++-|++++++.+.+....
T Consensus 141 ~-------~~~~~~~l~~l~~~~~~~~~i~~~~~~ 168 (230)
T PRK07580 141 P-------QEDAARMLAHLASLTRGSLIFTFAPYT 168 (230)
T ss_pred C-------HHHHHHHHHHHHhhcCCeEEEEECCcc
Confidence 3 234667888888888766666554443
No 311
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=95.31 E-value=0.11 Score=52.41 Aligned_cols=142 Identities=13% Similarity=0.132 Sum_probs=80.6
Q ss_pred HHHHHHHHhh---ccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcH----HHHHHHHHcCCCeEEEEcccc
Q 007645 184 DKYIDKLKQY---IPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHK----AQIQFALERGIPAFVAMLGTR 256 (595)
Q Consensus 184 ~~yi~~L~~~---l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~----~~l~~A~erg~~~~~~~~d~~ 256 (595)
.++...|..- ++...|+ +||-+|+.+|+....+.+---....+.+++.|+ ..++.|++|. ++.-+..|+.
T Consensus 56 SKLaAai~~Gl~~~~ik~gs--kVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~-NIiPIl~DAr 132 (229)
T PF01269_consen 56 SKLAAAILKGLENIPIKPGS--KVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP-NIIPILEDAR 132 (229)
T ss_dssp -HHHHHHHTT-S--S--TT---EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST-TEEEEES-TT
T ss_pred hHHHHHHHcCccccCCCCCC--EEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC-ceeeeeccCC
Confidence 3444444333 3445555 999999999988888877621122466778887 4555666654 5555555554
Q ss_pred cC---CCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCC--CCCC-CCchhHHHHHHHHHHcCcEEEE
Q 007645 257 RL---PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPP--VQWP-KQDKEWADLQAVARALCYELIA 330 (595)
Q Consensus 257 ~L---Pfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~--~~~~-~~~~~w~~l~~la~~~~w~~v~ 330 (595)
.- ..--+.+|+|++--. .++....++..+...||+||.++++... .... ..+..+..-.+.+++.+++.+.
T Consensus 133 ~P~~Y~~lv~~VDvI~~DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e 209 (229)
T PF01269_consen 133 HPEKYRMLVEMVDVIFQDVA---QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLE 209 (229)
T ss_dssp SGGGGTTTS--EEEEEEE-S---STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred ChHHhhcccccccEEEecCC---ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChhe
Confidence 21 111248999997532 2234457788888999999999998642 1111 1222354444455555666654
Q ss_pred e
Q 007645 331 V 331 (595)
Q Consensus 331 ~ 331 (595)
.
T Consensus 210 ~ 210 (229)
T PF01269_consen 210 Q 210 (229)
T ss_dssp E
T ss_pred E
Confidence 3
No 312
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=95.30 E-value=0.033 Score=58.67 Aligned_cols=128 Identities=17% Similarity=0.214 Sum_probs=64.9
Q ss_pred eeEEecccchhH--HHhhhcCC-CeEEEEeccCCCCCchhHHhhccchhhhcc-cCCCCCCCCCccchhhccCccccccC
Q 007645 443 RNIMDMNAFFGG--FAAALTSD-PVWVMNVVPARKSSTLSVIYDRGLIGVYHD-WCEPFSTYPRTYDLIHVSGIESLIKN 518 (595)
Q Consensus 443 RnvmDm~~~~g~--faa~l~~~-~vwvmnv~p~~~~~~l~~i~eRGlig~~~~-wce~f~typrtyDl~H~~~~~s~~~~ 518 (595)
..|||+|||+|= .||+++.- .|.-.-+=|..-.++..-+-.-|+-.-+.- ..+.+.. ..||||=|+=+....
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~--~~~dlvvANI~~~vL-- 238 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVE--GKFDLVVANILADVL-- 238 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCC--S-EEEEEEES-HHHH--
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEeccccc--ccCCEEEECCCHHHH--
Confidence 499999999994 45555442 354443333221222222333333221110 1122222 799999876655532
Q ss_pred CCCCCCCCChhhhHHhhcccccCCcEEEEeCCh-HHHHHHHHhHhccCceeEEeccCCCCCCCceEEEEEec
Q 007645 519 PGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-EVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKS 589 (595)
Q Consensus 519 ~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~-~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~l~~~K~ 589 (595)
..++=++.+.|+|||++|++--. +-.+.|.+..+. -|++.....++ .--.++++|+
T Consensus 239 ----------~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~~----~W~~l~~~Kk 295 (295)
T PF06325_consen 239 ----------LELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREEG----EWVALVFKKK 295 (295)
T ss_dssp ----------HHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEET----TEEEEEEEE-
T ss_pred ----------HHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEEC----CEEEEEEEeC
Confidence 23566689999999999998211 113444444454 66655443221 2345666664
No 313
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=95.27 E-value=0.013 Score=57.81 Aligned_cols=100 Identities=17% Similarity=0.223 Sum_probs=75.7
Q ss_pred hhhccCCCCeeeEEecccchhHHHhhhcC-CCeEEEEeccCCCCCchhHHhhccchhhhcccCCCCCCCC-Cccchhhcc
Q 007645 433 LNVKLGTPAIRNIMDMNAFFGGFAAALTS-DPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYP-RTYDLIHVS 510 (595)
Q Consensus 433 l~~~~~~~~~RnvmDm~~~~g~faa~l~~-~~vwvmnv~p~~~~~~l~~i~eRGlig~~~~wce~f~typ-rtyDl~H~~ 510 (595)
+...+..+ -.|||.|||-|.+.++|.+ +.|=..-|= ..+..+.-..+||+-=+-+|.=+.++.|| .+||.+=.+
T Consensus 7 I~~~I~pg--srVLDLGCGdG~LL~~L~~~k~v~g~GvE--id~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 7 IAEWIEPG--SRVLDLGCGDGELLAYLKDEKQVDGYGVE--IDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred HHHHcCCC--CEEEecCCCchHHHHHHHHhcCCeEEEEe--cCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehH
Confidence 34456665 5799999999999999977 555443331 22366778899999988889999999999 999999877
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
......+ .-+.+|-||= |=|.-+|++
T Consensus 83 qtLQ~~~---------~P~~vL~Eml---RVgr~~IVs 108 (193)
T PF07021_consen 83 QTLQAVR---------RPDEVLEEML---RVGRRAIVS 108 (193)
T ss_pred hHHHhHh---------HHHHHHHHHH---HhcCeEEEE
Confidence 7776553 3567999994 556677775
No 314
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.25 E-value=0.099 Score=52.13 Aligned_cols=109 Identities=11% Similarity=-0.001 Sum_probs=64.5
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCC-------
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLP------- 259 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LP------- 259 (595)
+.+|.+...... ...+|+|+|+..|+|+..+++.......+.++|+.+-- --..+.+.+.|...-+
T Consensus 33 L~el~~k~~i~~-~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------~~~~V~~iq~d~~~~~~~~~l~~ 105 (205)
T COG0293 33 LLELNEKFKLFK-PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------PIPGVIFLQGDITDEDTLEKLLE 105 (205)
T ss_pred HHHHHHhcCeec-CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------cCCCceEEeeeccCccHHHHHHH
Confidence 445555444322 23489999999999999988873322235555653311 1123667777654432
Q ss_pred -CCCCceeEEEEcCCC---cccccCH-------HHHHHHHHhhcCCCcEEEEEc
Q 007645 260 -FPAFSFDIVHCSRCL---IPFTAYN-------ATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 260 -fpd~sFDlV~~s~vL---~h~~~d~-------~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+....+|+|.|-..- .++..|. ..++.-+..+|+|||.|++..
T Consensus 106 ~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 106 ALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred HcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 334457999973322 1221111 245666777999999999976
No 315
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.24 E-value=0.028 Score=58.77 Aligned_cols=125 Identities=21% Similarity=0.204 Sum_probs=78.3
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC-eEEEEcccccC-C-CCCCceeEEEE----
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRL-P-FPAFSFDIVHC---- 270 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~-~~~~~~d~~~L-P-fpd~sFDlV~~---- 270 (595)
.+|||+.+|.|.=+..+++.-.....+.+.|++...++..+++ |.. +.....|.... + .....||.|+.
T Consensus 87 ~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDaPC 166 (283)
T PF01189_consen 87 ERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDAPC 166 (283)
T ss_dssp SEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEECSC
T ss_pred ccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcCCCc
Confidence 3899999999988888887733234788899999888766544 554 34444555443 1 23346999996
Q ss_pred cCC--Ccccc--------c-------CHHHHHHHHHhhc----CCCcEEEEEcCCCCCCCCchhHHHHHHHHHHc-CcEE
Q 007645 271 SRC--LIPFT--------A-------YNATYLIEVDRLL----RPGGYLVISGPPVQWPKQDKEWADLQAVARAL-CYEL 328 (595)
Q Consensus 271 s~v--L~h~~--------~-------d~~~~L~Ei~RvL----RPGG~lvls~p~~~~~~~~~~w~~l~~la~~~-~w~~ 328 (595)
+.. +..-+ . -...+|..+.+.+ ||||+++.++-.....+. ...++.++++. .|++
T Consensus 167 Sg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eEN---E~vV~~fl~~~~~~~l 243 (283)
T PF01189_consen 167 SGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEEN---EEVVEKFLKRHPDFEL 243 (283)
T ss_dssp CCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGT---HHHHHHHHHHSTSEEE
T ss_pred cchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHH---HHHHHHHHHhCCCcEE
Confidence 221 11100 0 1126789999999 999999999863322222 23455565544 3444
Q ss_pred E
Q 007645 329 I 329 (595)
Q Consensus 329 v 329 (595)
+
T Consensus 244 ~ 244 (283)
T PF01189_consen 244 V 244 (283)
T ss_dssp E
T ss_pred E
Confidence 3
No 316
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=95.20 E-value=0.024 Score=56.35 Aligned_cols=94 Identities=19% Similarity=0.233 Sum_probs=61.1
Q ss_pred eeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhccc-hhhh-cccCCCCCCCCCccchhhccCcccccc
Q 007645 442 IRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGL-IGVY-HDWCEPFSTYPRTYDLIHVSGIESLIK 517 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eRGl-ig~~-~~wce~f~typrtyDl~H~~~~~s~~~ 517 (595)
-..|||+|||.|-+..+|... +- .++.-.|-. +.+..+-++-- +.+. .|-.++|+ +++||+|-+.+++.+..
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~--~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFK--DNFFDLVLTKGVLIHIN 119 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCC--CCCEEEEEECChhhhCC
Confidence 457999999999999999664 21 234444533 56665544310 1111 22223332 28999999999998652
Q ss_pred CCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 518 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 518 ~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
.-.+..++-||-|++ +++++|.
T Consensus 120 -------p~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 120 -------PDNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred -------HHHHHHHHHHHHhhc--CcEEEEE
Confidence 235677899999998 5788875
No 317
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.18 E-value=0.037 Score=58.50 Aligned_cols=119 Identities=21% Similarity=0.250 Sum_probs=67.5
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhh----ccc---hhh-hcccCCCCCCCCCccchhhccCc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYD----RGL---IGV-YHDWCEPFSTYPRTYDLIHVSGI 512 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGl---ig~-~~~wce~f~typrtyDl~H~~~~ 512 (595)
.+|+|+|||.|.++.+|... |- .+|+-.|-. ..+.++-+ .|+ |-. -.|+-+.++ +.+||+|-++--
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCC
Confidence 57999999999999998643 32 345555543 55554433 243 212 224333332 268999998743
Q ss_pred ccccc-----------CCCC----CCCCCC-hhhhHHhhcccccCCcEEEEeCChHHHHHHHHhHhc--cCc
Q 007645 513 ESLIK-----------NPGS----NKNSCS-LVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANT--VRW 566 (595)
Q Consensus 513 ~s~~~-----------~~~~----~~~~c~-~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~~~--~~W 566 (595)
+.... .|.. ..+... ...++-+.-+.|+|||.+++--..+ ..++.++... +.|
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~~~~~ 281 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDVPFTW 281 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhCCCEE
Confidence 32110 0100 000111 2478889999999999999852222 3346666554 445
No 318
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.17 E-value=0.023 Score=56.24 Aligned_cols=90 Identities=22% Similarity=0.259 Sum_probs=50.8
Q ss_pred eeEEecccchhHHHhhhcC-----CCeEEEEeccCCCCCchhHHhhccchh---hh-cccCCCCCCCCCccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTS-----DPVWVMNVVPARKSSTLSVIYDRGLIG---VY-HDWCEPFSTYPRTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~-----~~vwvmnv~p~~~~~~l~~i~eRGlig---~~-~~wce~f~typrtyDl~H~~~~~ 513 (595)
..|||+|||.|.+++.|.. ..|..+-+.|.-....-+-+...|+.. ++ .|-.+.++. ..+||.|.+...+
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~~ 152 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIVTAAA 152 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-CCCccEEEEccCc
Confidence 4799999999999877743 234444333321110001222335422 12 233333322 2689999977654
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
.. +.=|+-|.|+|||.+++-
T Consensus 153 ~~---------------~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 153 ST---------------IPSALVRQLKDGGVLVIP 172 (205)
T ss_pred ch---------------hhHHHHHhcCcCcEEEEE
Confidence 32 223667999999999984
No 319
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=95.15 E-value=0.03 Score=49.49 Aligned_cols=90 Identities=20% Similarity=0.235 Sum_probs=52.2
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHH----hhccchhh--h-cc--cCCCCCCCCCccchhhccC
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVI----YDRGLIGV--Y-HD--WCEPFSTYPRTYDLIHVSG 511 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i----~eRGlig~--~-~~--wce~f~typrtyDl~H~~~ 511 (595)
..|+|+|||.|.++..+.+. |- .+|+-.|-. ..+..+ -+.|+-.+ . .| |+.. .-+.+||.|=...
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~D~v~~~~ 96 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE--DSLPEPDRVFIGG 96 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh--hhcCCCCEEEECC
Confidence 48999999999999988653 21 234444433 333322 12232111 0 11 2211 1235788874332
Q ss_pred ccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 512 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 512 ~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
.. -....++-++-|.|+|||++++.
T Consensus 97 ~~------------~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 97 SG------------GLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred cc------------hhHHHHHHHHHHHcCCCCEEEEE
Confidence 22 12357899999999999999974
No 320
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=95.14 E-value=0.023 Score=57.38 Aligned_cols=101 Identities=16% Similarity=0.197 Sum_probs=65.8
Q ss_pred ccCCCCeeeEEecccchhHHHhhhcC-CCeEEEEeccCCCCCchhHHhhcc-chhhhcccCCCCCCCCCccchhhccCcc
Q 007645 436 KLGTPAIRNIMDMNAFFGGFAAALTS-DPVWVMNVVPARKSSTLSVIYDRG-LIGVYHDWCEPFSTYPRTYDLIHVSGIE 513 (595)
Q Consensus 436 ~~~~~~~RnvmDm~~~~g~faa~l~~-~~vwvmnv~p~~~~~~l~~i~eRG-lig~~~~wce~f~typrtyDl~H~~~~~ 513 (595)
......++.|+|+|+|.|.|++++.. .|=+ .++-.|-|..+..+-+.. +--+=|| -|.++|. ||++...+++
T Consensus 95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l--~~~v~Dlp~v~~~~~~~~rv~~~~gd---~f~~~P~-~D~~~l~~vL 168 (241)
T PF00891_consen 95 AFDFSGFKTVVDVGGGSGHFAIALARAYPNL--RATVFDLPEVIEQAKEADRVEFVPGD---FFDPLPV-ADVYLLRHVL 168 (241)
T ss_dssp HSTTTTSSEEEEET-TTSHHHHHHHHHSTTS--EEEEEE-HHHHCCHHHTTTEEEEES----TTTCCSS-ESEEEEESSG
T ss_pred cccccCccEEEeccCcchHHHHHHHHHCCCC--cceeeccHhhhhcccccccccccccc---HHhhhcc-ccceeeehhh
Confidence 45678899999999999999999943 2321 122234444444444311 1111122 2567888 9999999999
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCC--cEEEEeC
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPE--GTVVVRD 549 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~--G~~i~rd 549 (595)
-.|. .-....||--+=+-|+|| |.++|-|
T Consensus 169 h~~~-------d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 169 HDWS-------DEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp GGS--------HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred hhcc-------hHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 9885 233445999999999999 9999863
No 321
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=95.12 E-value=0.29 Score=48.92 Aligned_cols=115 Identities=15% Similarity=0.074 Sum_probs=76.1
Q ss_pred EEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcc-cccCCCCCCceeEEEEcCCCcc
Q 007645 204 ALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLG-TRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 204 VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d-~~~LPfpd~sFDlV~~s~vL~h 276 (595)
|.||||--|.+..+|++++. +-.+.+.|+++.-++.|++. ++ .+.+..+| ...++ +.+..|.|+.+.+--.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK-PGEDVDTIVIAGMGGE 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-HH
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC-CCCCCCEEEEecCCHH
Confidence 68999999999999999976 44677889999999998865 43 35566665 34443 2223789887765422
Q ss_pred cccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 277 FTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 277 ~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
-...+|.+....++..-.|++.- ......+++.+.+.+|.++.+
T Consensus 79 ---lI~~ILe~~~~~~~~~~~lILqP--------~~~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 79 ---LIIEILEAGPEKLSSAKRLILQP--------NTHAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp ---HHHHHHHHTGGGGTT--EEEEEE--------SS-HHHHHHHHHHTTEEEEEE
T ss_pred ---HHHHHHHhhHHHhccCCeEEEeC--------CCChHHHHHHHHHCCCEEEEe
Confidence 23466777777777777888863 223567899999999999876
No 322
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.08 E-value=0.17 Score=50.08 Aligned_cols=96 Identities=15% Similarity=0.138 Sum_probs=61.0
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHH----HcCCCeEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFAL----ERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~----erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
.++|||+|+|+|..+..-+..|.. .+...|+.+...+... .+|..+.+...|... .+..||+++.+.++..
T Consensus 80 gkrVLd~gagsgLvaIAaa~aGA~--~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 80 GKRVLDLGAGSGLVAIAAARAGAA--EVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYN 154 (218)
T ss_pred cceeeecccccChHHHHHHHhhhH--HHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecC
Confidence 449999999999877777666532 4455577766665543 346666666554432 5678999999987744
Q ss_pred cccCHHHHHHHHHhhcCCCcEEEE-EcC
Q 007645 277 FTAYNATYLIEVDRLLRPGGYLVI-SGP 303 (595)
Q Consensus 277 ~~~d~~~~L~Ei~RvLRPGG~lvl-s~p 303 (595)
-. ....++. ..+.|+..|.-++ -+|
T Consensus 155 ~~-~a~~l~~-~~~~l~~~g~~vlvgdp 180 (218)
T COG3897 155 HT-EADRLIP-WKDRLAEAGAAVLVGDP 180 (218)
T ss_pred ch-HHHHHHH-HHHHHHhCCCEEEEeCC
Confidence 22 2345555 5555555555444 444
No 323
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=95.07 E-value=0.067 Score=55.92 Aligned_cols=121 Identities=23% Similarity=0.274 Sum_probs=68.6
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhh----ccchh----hhcccCCCCCCCC-CccchhhccC
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYD----RGLIG----VYHDWCEPFSTYP-RTYDLIHVSG 511 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGlig----~~~~wce~f~typ-rtyDl~H~~~ 511 (595)
.+|+|+|||.|.++.+|... |- .+|+-.|-. ..+.++-+ .|+-. +..|+-+. .| .+||+|=++-
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~--~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~---~~~~~fD~Iv~NP 197 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPE--AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA---LPGRKYDLIVSNP 197 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc---cCCCCccEEEECC
Confidence 57999999999999999653 21 134444543 44544433 25421 12233333 34 5899998763
Q ss_pred cccccc-----------CCC----CCCCCCC-hhhhHHhhcccccCCcEEEEeCChHHHHHHHHhHhccCceeE
Q 007645 512 IESLIK-----------NPG----SNKNSCS-LVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAA 569 (595)
Q Consensus 512 ~~s~~~-----------~~~----~~~~~c~-~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~~~~~W~~~ 569 (595)
-+.... .|. +..+... ...++-+.-+.|+|||.+++--..+. ++++++.....|.-.
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~ 270 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWL 270 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCcee
Confidence 332110 000 0001111 24678889999999999998533333 577777765544333
No 324
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=95.04 E-value=0.033 Score=53.67 Aligned_cols=146 Identities=20% Similarity=0.263 Sum_probs=69.9
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCCC-----eEEEEeccCCCCCchhHHhhccch---hhhcccCCCCCCCCCccchhh
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSDP-----VWVMNVVPARKSSTLSVIYDRGLI---GVYHDWCEPFSTYPRTYDLIH 508 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~~-----vwvmnv~p~~~~~~l~~i~eRGli---g~~~~wce~f~typrtyDl~H 508 (595)
+..++-.+|+|.||+-|||..++.... |+-+-+.|.+....+..+ +|=| .+...-.+.++.=.+.+|||-
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceec
Confidence 345567999999999999999998776 445555555222222221 2211 111111222221116899999
Q ss_pred ccCccccccCCCCCCCCCChhhhHHh---hcccccCCcEEEEe-----CChHHHHHHHHhHhccCceeEEeccCCCCCCC
Q 007645 509 VSGIESLIKNPGSNKNSCSLVDLMVE---MDRMLRPEGTVVVR-----DSPEVIDKVSRIANTVRWTAAVHDKEPGSNGR 580 (595)
Q Consensus 509 ~~~~~s~~~~~~~~~~~c~~~~~llE---mdRiLRP~G~~i~r-----d~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~ 580 (595)
|+..+..-.++..+ +--.+.-++-+ +-..|+|||.+|+. +..+++..++..=+.+++ ..-.-..+...
T Consensus 97 ~D~~~~~~g~~~~d-~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~---~Kp~~sr~~s~ 172 (181)
T PF01728_consen 97 SDMAPNVSGDRNID-EFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKI---VKPPSSRSESS 172 (181)
T ss_dssp E-------SSHHSS-HHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEE---EE-TTSBTTCB
T ss_pred cccccCCCCchhhH-HHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEE---EECcCCCCCcc
Confidence 98855421100000 00011112222 23559999988874 223555555554333322 22333455667
Q ss_pred ceEEEEEe
Q 007645 581 EKILVATK 588 (595)
Q Consensus 581 ~~~l~~~K 588 (595)
|.-+||.+
T Consensus 173 E~Ylv~~~ 180 (181)
T PF01728_consen 173 EEYLVCRG 180 (181)
T ss_dssp EEEEESEE
T ss_pred EEEEEEcC
Confidence 88888764
No 325
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=95.00 E-value=0.11 Score=57.27 Aligned_cols=140 Identities=14% Similarity=0.144 Sum_probs=80.1
Q ss_pred eEEecccchhHHHhhhcC-CCeEEEEeccCCCC-CchhHHhh----ccc-h-hhhcccCCCCCCCC--CccchhhccCcc
Q 007645 444 NIMDMNAFFGGFAAALTS-DPVWVMNVVPARKS-STLSVIYD----RGL-I-GVYHDWCEPFSTYP--RTYDLIHVSGIE 513 (595)
Q Consensus 444 nvmDm~~~~g~faa~l~~-~~vwvmnv~p~~~~-~~l~~i~e----RGl-i-g~~~~wce~f~typ--rtyDl~H~~~~~ 513 (595)
+|+|+|||.|.++.+|.. .|- .+|+-.|-. ..|.++-+ .|+ + =+-.|+.+. .+| ..||+|-++--+
T Consensus 254 rVLDLGcGSG~IaiaLA~~~p~--a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~--~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALERPD--AFVRASDISPPALETARKNAADLGARVEFAHGSWFDT--DMPSEGKWDIIVSNPPY 329 (423)
T ss_pred EEEEEeChhhHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcc--ccccCCCccEEEECCCC
Confidence 799999999999988753 232 234444443 45544433 232 1 122355443 122 479999987644
Q ss_pred ccccC-----------CC----CCCCCCC-hhhhHHhhcccccCCcEEEEeCChHHHHHHHHhHhccCceeEEeccCCCC
Q 007645 514 SLIKN-----------PG----SNKNSCS-LVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGS 577 (595)
Q Consensus 514 s~~~~-----------~~----~~~~~c~-~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~~~~~W~~~~~~~~~~~ 577 (595)
..-.+ |. ...+... +..|+-+.-+.|+|||++++--..+.-+.+++++....|+....-. .-
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~k--Dl 407 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLP--DL 407 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEE--cC
Confidence 32110 00 0000000 2256667788999999998854445567888888887776433322 22
Q ss_pred CCCceEEEEEec
Q 007645 578 NGREKILVATKS 589 (595)
Q Consensus 578 ~~~~~~l~~~K~ 589 (595)
.+.++++++++.
T Consensus 408 ~G~dR~v~~~~~ 419 (423)
T PRK14966 408 AGLDRVTLGKYM 419 (423)
T ss_pred CCCcEEEEEEEh
Confidence 346788888753
No 326
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=94.89 E-value=0.057 Score=50.30 Aligned_cols=94 Identities=15% Similarity=0.078 Sum_probs=56.6
Q ss_pred CcceEEEECCCCcHHHHHHhh-----cCCceEEEEeecCcHHHHHHHHHcCC--------CeEEEEcccccCCCCCCcee
Q 007645 200 TLRTALDMGCGVASFGGSMLS-----ENILTLSFAPRDSHKAQIQFALERGI--------PAFVAMLGTRRLPFPAFSFD 266 (595)
Q Consensus 200 ~~r~VLDIGCGtG~~a~~La~-----~gv~~~~v~~vD~s~~~l~~A~erg~--------~~~~~~~d~~~LPfpd~sFD 266 (595)
...+|+|+|||.|.++..|+. . ....+.++|.++..++.+.++.- ...+...+....+ .....+
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 355899999999999999988 3 44588889999998888776521 1122222222111 145566
Q ss_pred EEEEcCCCcccccCHH-HHHHHHHhhcCCCcEEEEEcC
Q 007645 267 IVHCSRCLIPFTAYNA-TYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 267 lV~~s~vL~h~~~d~~-~~L~Ei~RvLRPGG~lvls~p 303 (595)
+++.. |-..+.. .+|+-+.+ ++-.+++..|
T Consensus 102 ~~vgL----HaCG~Ls~~~l~~~~~---~~~~~l~~vp 132 (141)
T PF13679_consen 102 ILVGL----HACGDLSDRALRLFIR---PNARFLVLVP 132 (141)
T ss_pred EEEEe----ecccchHHHHHHHHHH---cCCCEEEEcC
Confidence 77654 3333333 34444444 6666666554
No 327
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=94.84 E-value=0.03 Score=55.92 Aligned_cols=110 Identities=18% Similarity=0.264 Sum_probs=58.4
Q ss_pred eeeEEecccchhHHHhhhcCC-CeEEEEeccCCCCCchhHHhhccchhhhcccCCCCCCCCCccchhhccCccccccCCC
Q 007645 442 IRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPG 520 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~~~l~~i~eRGlig~~~~wce~f~typrtyDl~H~~~~~s~~~~~~ 520 (595)
--.|-|||||-|-.|+++.+. .|.-.-.|+....=| +-|= + | -|+.. -+.|++= -|+|+-
T Consensus 73 ~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~Vt---acdi---a--~---vPL~~--~svDv~V--fcLSLM---- 133 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPRVT---ACDI---A--N---VPLED--ESVDVAV--FCLSLM---- 133 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S---EEEEESS-SSTTEE---ES-T---T--S----S--T--T-EEEEE--EES-------
T ss_pred CEEEEECCCchHHHHHhcccCceEEEeeccCCCCCEE---EecC---c--c---CcCCC--CceeEEE--EEhhhh----
Confidence 357999999999999887533 455555555433211 0000 0 0 01121 6777743 455543
Q ss_pred CCCCCCChhhhHHhhcccccCCcEEEEeCChHHHHHHH---HhHhccCceeEEeccC
Q 007645 521 SNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVS---RIANTVRWTAAVHDKE 574 (595)
Q Consensus 521 ~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~---~~~~~~~W~~~~~~~~ 574 (595)
+=+..+.|.|-.|||||||.++|-+-.+-.+.++ +.++++-.++...|..
T Consensus 134 ----GTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~ 186 (219)
T PF05148_consen 134 ----GTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDES 186 (219)
T ss_dssp ----SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--
T ss_pred ----CCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccC
Confidence 2567799999999999999999975444333333 4567777887776543
No 328
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=94.79 E-value=0.022 Score=59.33 Aligned_cols=97 Identities=22% Similarity=0.328 Sum_probs=72.2
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCC-CeEEEEeccCCCCCchh----HHhhccch----hhhcccCCCCCCCCCccchh
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKSSTLS----VIYDRGLI----GVYHDWCEPFSTYPRTYDLI 507 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~~~l~----~i~eRGli----g~~~~wce~f~typrtyDl~ 507 (595)
|+.| -.|||+|||-||.+-++... +|=|.-|.-.. +|+. -|-++||- -.++||-+.=. .||=|
T Consensus 70 L~~G--~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~--~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e----~fDrI 141 (283)
T COG2230 70 LKPG--MTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSE--EQLAYAEKRIAARGLEDNVEVRLQDYRDFEE----PFDRI 141 (283)
T ss_pred CCCC--CEEEEeCCChhHHHHHHHHHcCCEEEEeeCCH--HHHHHHHHHHHHcCCCcccEEEecccccccc----cccee
Confidence 5555 68999999999999888655 67655554332 5554 37779987 44667654333 39999
Q ss_pred hccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 508 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 508 H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
=+-+.|.+. ..-+..+++-=+.++|+|||-+++.
T Consensus 142 vSvgmfEhv-------g~~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 142 VSVGMFEHV-------GKENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred eehhhHHHh-------CcccHHHHHHHHHhhcCCCceEEEE
Confidence 999999876 3456788999999999999999875
No 329
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=94.67 E-value=0.14 Score=53.14 Aligned_cols=103 Identities=18% Similarity=0.129 Sum_probs=58.9
Q ss_pred CcceEEEECCCC--cHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc---CCC--eEEEEcccccCC-----------CC
Q 007645 200 TLRTALDMGCGV--ASFGGSMLSENILTLSFAPRDSHKAQIQFALER---GIP--AFVAMLGTRRLP-----------FP 261 (595)
Q Consensus 200 ~~r~VLDIGCGt--G~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er---g~~--~~~~~~d~~~LP-----------fp 261 (595)
.++..||||||- ....-.++++-.....++-+|.++-.+..++.. ..+ ..++.+|+.+.. +.
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 367899999993 344555655533445777789999888866543 334 677777754421 11
Q ss_pred -CCceeEEEEcCCCccccc--CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 262 -AFSFDIVHCSRCLIPFTA--YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 262 -d~sFDlV~~s~vL~h~~~--d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++.. .+....+|++..+ ++..++..+...|.||.+|+++-.
T Consensus 148 ~~rPV-avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 148 FDRPV-AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp TTS---EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred CCCCe-eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 2222 4555677866653 667999999999999999999864
No 330
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.60 E-value=0.12 Score=55.10 Aligned_cols=125 Identities=19% Similarity=0.154 Sum_probs=66.1
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHH--cCC--C-----eEEEEccccc
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE--RGI--P-----AFVAMLGTRR 257 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~e--rg~--~-----~~~~~~d~~~ 257 (595)
++.+....+... ..+|||+|.|.|.-+.++-+.-..--+.+-++.|+..-+.... ..+ . +.-++ ..+
T Consensus 102 L~~L~~~~~dfa--pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt--~dR 177 (484)
T COG5459 102 LDELQKRVPDFA--PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVT--EDR 177 (484)
T ss_pred HHHHHHhCCCcC--cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccc--hhc
Confidence 344555555444 3479999999997665544331111223334455544333221 111 0 11112 234
Q ss_pred CCCC-CCceeEEEEcCCCccccc--CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHH
Q 007645 258 LPFP-AFSFDIVHCSRCLIPFTA--YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAV 320 (595)
Q Consensus 258 LPfp-d~sFDlV~~s~vL~h~~~--d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~l 320 (595)
++++ ...|++|+...-|-|... .....+..+..+++|||.|+|.++. .-.+|+.+.+.
T Consensus 178 l~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG-----tp~Gf~~I~rA 238 (484)
T COG5459 178 LSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG-----TPAGFERILRA 238 (484)
T ss_pred cCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC-----CchhHHHHHHH
Confidence 4444 345777766554444331 1124788888999999999999862 12346666553
No 331
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=94.57 E-value=0.038 Score=54.72 Aligned_cols=87 Identities=20% Similarity=0.213 Sum_probs=49.3
Q ss_pred eeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchh--hhcccCCCCCCCC--CccchhhccCc
Q 007645 442 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIG--VYHDWCEPFSTYP--RTYDLIHVSGI 512 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig--~~~~wce~f~typ--rtyDl~H~~~~ 512 (595)
-..|||+|||.|.+++.|....- .|.-.+.. +-+..+-++ |+-. +.+ ...+.++| .+||+|.++..
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~--~d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRH--GDGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEE--CCcccCCCcCCCcCEEEEccC
Confidence 35799999999999887654311 23333322 333333222 3311 111 11233444 68999986654
Q ss_pred cccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 513 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 513 ~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
+.. +.-++-+.|+|||.+++.
T Consensus 154 ~~~---------------~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 154 APE---------------IPRALLEQLKEGGILVAP 174 (212)
T ss_pred chh---------------hhHHHHHhcCCCcEEEEE
Confidence 432 233456899999999885
No 332
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=94.35 E-value=0.061 Score=51.60 Aligned_cols=113 Identities=19% Similarity=0.199 Sum_probs=64.0
Q ss_pred eeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhh----ccch---hhhcccCCCCCCCCCccchhhccCc
Q 007645 442 IRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYD----RGLI---GVYHDWCEPFSTYPRTYDLIHVSGI 512 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGli---g~~~~wce~f~typrtyDl~H~~~~ 512 (595)
-.+|+|+|||.|-.+.+|... |-.. |+-.|.. +-+..+.+ -|+- -..+|+.+.+. +..||+|=++--
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~--v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NPP 107 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAK--VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNPP 107 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEE--EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE---
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCE--EEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEccc
Confidence 357999999999888887543 3222 3333433 34443322 2222 23445555554 489999876654
Q ss_pred cccccCCCCCCCCCChhhhHHhhcccccCCcEE--EEeCChHHHHHHHHhHh
Q 007645 513 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTV--VVRDSPEVIDKVSRIAN 562 (595)
Q Consensus 513 ~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~--i~rd~~~~~~~~~~~~~ 562 (595)
|..= .......+..++-+-=++|+|||.+ +++.+...-..++++..
T Consensus 108 ~~~~----~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 108 FHAG----GDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp SBTT----SHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred hhcc----cccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 3210 0011134568889999999999977 45555544444555544
No 333
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=94.33 E-value=0.1 Score=50.23 Aligned_cols=67 Identities=21% Similarity=0.152 Sum_probs=45.0
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCC--CCCCc-eeEEEEcC
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLP--FPAFS-FDIVHCSR 272 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LP--fpd~s-FDlV~~s~ 272 (595)
+|+|+.||.|..+..+++..- .+.++|+++..++.|+.+ |+ ++.++.+|..++. +..+. ||+|+++-
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 799999999999999999843 677889999999998876 54 4788888854331 12122 89999853
No 334
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.08 E-value=0.35 Score=52.74 Aligned_cols=19 Identities=37% Similarity=0.560 Sum_probs=17.0
Q ss_pred CCCCCceeEEEEcCCCcccc
Q 007645 259 PFPAFSFDIVHCSRCLIPFT 278 (595)
Q Consensus 259 Pfpd~sFDlV~~s~vL~h~~ 278 (595)
-||+++.+++||+.++ ||.
T Consensus 157 LfP~~Slh~~~Ss~sl-HWL 175 (386)
T PLN02668 157 LFPARSIDVFHSAFSL-HWL 175 (386)
T ss_pred ccCCCceEEEEeeccc-eec
Confidence 3889999999999999 776
No 335
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=94.01 E-value=0.018 Score=50.45 Aligned_cols=95 Identities=14% Similarity=0.045 Sum_probs=38.1
Q ss_pred EEECCCCcHHHHHHhhcCCce--EEEEeecCcH---HHHHHHHHcCC--CeEEEEcccccC--CCCCCceeEEEEcCCCc
Q 007645 205 LDMGCGVASFGGSMLSENILT--LSFAPRDSHK---AQIQFALERGI--PAFVAMLGTRRL--PFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 205 LDIGCGtG~~a~~La~~gv~~--~~v~~vD~s~---~~l~~A~erg~--~~~~~~~d~~~L--Pfpd~sFDlV~~s~vL~ 275 (595)
||||+..|..+..+++.--.. ..+..+|..+ ...+..++.+. .+.+...+.... .++.++||+|+.-. .
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg--~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG--D 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC--C
Confidence 689999998888877651111 2567778777 34444443333 466777664322 12357899999754 2
Q ss_pred ccccCHHHHHHHHHhhcCCCcEEEEE
Q 007645 276 PFTAYNATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 276 h~~~d~~~~L~Ei~RvLRPGG~lvls 301 (595)
|-.+.....+..+.+.|+|||.+++-
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 33234456788899999999999874
No 336
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=93.90 E-value=0.51 Score=49.30 Aligned_cols=102 Identities=12% Similarity=0.082 Sum_probs=61.6
Q ss_pred cceEEEECCCCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHc-------CCCeEEEEcccccCCCCCCceeEEEEcC
Q 007645 201 LRTALDMGCGVASFGGSMLSE-NILTLSFAPRDSHKAQIQFALER-------GIPAFVAMLGTRRLPFPAFSFDIVHCSR 272 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~er-------g~~~~~~~~d~~~LPfpd~sFDlV~~s~ 272 (595)
.++|+=||||.=-++..++.. ......+.++|+++++++.|++- +....|...|....+..-..||+|+.+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 458999999987666655543 23356788999999999988642 3356788888776665557899999775
Q ss_pred CCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 273 CLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 273 vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
....-.++-..+|..+.+.++||..+++-.
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 442222355799999999999999999864
No 337
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=93.86 E-value=0.063 Score=56.48 Aligned_cols=112 Identities=13% Similarity=0.162 Sum_probs=66.1
Q ss_pred HHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc------c--chhhhcccCCCC
Q 007645 427 AYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR------G--LIGVYHDWCEPF 497 (595)
Q Consensus 427 ~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR------G--lig~~~~wce~f 497 (595)
+.+...+...++.+ .+|+|+|||.|.++..|.+.-.=.-+|++.|-. .-|..+.++ + +.++..|-++.+
T Consensus 51 ~~~~~~ia~~~~~~--~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~ 128 (301)
T TIGR03438 51 ERHADEIAAATGAG--CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPL 128 (301)
T ss_pred HHHHHHHHHhhCCC--CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh
Confidence 33444444445444 479999999999998886541002467888866 666666554 1 123444555443
Q ss_pred CCCCCcc----c-hhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 498 STYPRTY----D-LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 498 ~typrty----D-l~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
+ +|..+ + ++.....|..+ .+-....+|-++=+.|+|||.++|.
T Consensus 129 ~-~~~~~~~~~~~~~~~gs~~~~~-------~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 129 A-LPPEPAAGRRLGFFPGSTIGNF-------TPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred h-hhcccccCCeEEEEecccccCC-------CHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 2 23333 2 23322333322 2223457899999999999999974
No 338
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=93.80 E-value=0.018 Score=56.90 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=72.0
Q ss_pred eeEEecccchhHHHhhhc--CCCeEEEEeccCCCC-----CchhHHhhccchhhhcccCCCCCC----C-CCccchhhcc
Q 007645 443 RNIMDMNAFFGGFAAALT--SDPVWVMNVVPARKS-----STLSVIYDRGLIGVYHDWCEPFST----Y-PRTYDLIHVS 510 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~--~~~vwvmnv~p~~~~-----~~l~~i~eRGlig~~~~wce~f~t----y-prtyDl~H~~ 510 (595)
..++|+|||.|.|..++. ..+. |++=.+-. ..+.-+..+||--+.--.|.+... . |.+.|-||
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~---n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~-- 93 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDI---NFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIY-- 93 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTS---EEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEE--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCC---CEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEE--
Confidence 389999999999999883 3332 33333322 345567777875544444555442 2 36777766
Q ss_pred CccccccCCCC----CCCCCChhhhHHhhcccccCCcEEEEe-CChHHHHHHHHhHhcc--CceeE
Q 007645 511 GIESLIKNPGS----NKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIANTV--RWTAA 569 (595)
Q Consensus 511 ~~~s~~~~~~~----~~~~c~~~~~llEmdRiLRP~G~~i~r-d~~~~~~~~~~~~~~~--~W~~~ 569 (595)
..+-||=- .+.|=--...|-+|-|+|+|||.+-++ |..+..+.+.+.+... .++..
T Consensus 94 ---i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 94 ---INFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp ---EES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred ---EeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence 22222211 223333447888999999999999886 7778888888877664 55544
No 339
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=93.79 E-value=0.13 Score=50.76 Aligned_cols=136 Identities=18% Similarity=0.080 Sum_probs=73.7
Q ss_pred hhccccCCCcceEEEECCCCcHHHHHHhhc-CC--ceEEEEeecCc-------HHHHHHHHHcCC-CeEEEEcccccCC-
Q 007645 192 QYIPITGGTLRTALDMGCGVASFGGSMLSE-NI--LTLSFAPRDSH-------KAQIQFALERGI-PAFVAMLGTRRLP- 259 (595)
Q Consensus 192 ~~l~~~~g~~r~VLDIGCGtG~~a~~La~~-gv--~~~~v~~vD~s-------~~~l~~A~erg~-~~~~~~~d~~~LP- 259 (595)
.....+.+. +|+|+=-|.|.|++-+... +. .+..+.+.+.. +.+-..+++... +.+..-.....++
T Consensus 42 ~FaGlkpg~--tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~ 119 (238)
T COG4798 42 AFAGLKPGA--TVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGA 119 (238)
T ss_pred EEeccCCCC--EEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCC
Confidence 344456655 9999999999999988776 22 34566665541 122222222211 1111111122222
Q ss_pred ------CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCC--CCCchh------HHHHHHHHHHcC
Q 007645 260 ------FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQW--PKQDKE------WADLQAVARALC 325 (595)
Q Consensus 260 ------fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~--~~~~~~------w~~l~~la~~~~ 325 (595)
.+..++|.++.+.-+ | ....+.+-.++.+.|||||.+++.+....- ...+.. -..+....+..+
T Consensus 120 pq~~d~~~~~~~yhdmh~k~i-~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaG 197 (238)
T COG4798 120 PQKLDLVPTAQNYHDMHNKNI-H-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAG 197 (238)
T ss_pred CCcccccccchhhhhhhcccc-C-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhc
Confidence 223345544444433 3 234568899999999999999998752211 111110 112555666778
Q ss_pred cEEEEe
Q 007645 326 YELIAV 331 (595)
Q Consensus 326 w~~v~~ 331 (595)
|++..+
T Consensus 198 Fkl~ae 203 (238)
T COG4798 198 FKLEAE 203 (238)
T ss_pred ceeeee
Confidence 877755
No 340
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=93.73 E-value=0.071 Score=54.72 Aligned_cols=107 Identities=17% Similarity=0.245 Sum_probs=69.4
Q ss_pred eEEecccchhHHHhhhcCCCeEEEEeccCCCCCchhHHhhccchhhhcccCCCCCCCCCccchhhccCccccccCCCCCC
Q 007645 444 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNK 523 (595)
Q Consensus 444 nvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~~~l~~i~eRGlig~~~~wce~f~typrtyDl~H~~~~~s~~~~~~~~~ 523 (595)
.|-|||||-|-.|. =...+|-.|-+|+.+..-+.-=|-. -|+. .+|-|++- .|+|+-
T Consensus 183 vIaD~GCGEakiA~-~~~~kV~SfDL~a~~~~V~~cDm~~-----------vPl~--d~svDvaV--~CLSLM------- 239 (325)
T KOG3045|consen 183 VIADFGCGEAKIAS-SERHKVHSFDLVAVNERVIACDMRN-----------VPLE--DESVDVAV--FCLSLM------- 239 (325)
T ss_pred EEEecccchhhhhh-ccccceeeeeeecCCCceeeccccC-----------CcCc--cCcccEEE--eeHhhh-------
Confidence 58899999887765 3455788888888766522211100 0111 27778743 566653
Q ss_pred CCCChhhhHHhhcccccCCcEEEEeCChHHHHHHHHh---HhccCceeEEeccC
Q 007645 524 NSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRI---ANTVRWTAAVHDKE 574 (595)
Q Consensus 524 ~~c~~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~---~~~~~W~~~~~~~~ 574 (595)
.-++-+.+.|..|||+|||.+.|-+-.+-...++.+ +++|-.++...|.+
T Consensus 240 -gtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 240 -GTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred -cccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhh
Confidence 267789999999999999999997544444444433 45677777666444
No 341
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=93.71 E-value=0.16 Score=50.49 Aligned_cols=98 Identities=18% Similarity=0.137 Sum_probs=51.6
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHH-------HHHHcC----C-CeEEEEcc-cccCC--CCCCce-e
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQ-------FALERG----I-PAFVAMLG-TRRLP--FPAFSF-D 266 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~-------~A~erg----~-~~~~~~~d-~~~LP--fpd~sF-D 266 (595)
.+.|||||.|.+...|+..... ..+.|.++-...-+ ..+.+. . ++.+.... ..-+| |..++. -
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPd-tLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk 141 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPD-TLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK 141 (249)
T ss_pred eEEeeccCccchhhhccccCcc-ceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccccc
Confidence 6899999999999999988443 34556655443333 332221 1 11111111 11122 122221 1
Q ss_pred EEEEcCCCccccc-------CHHHHHHHHHhhcCCCcEEEEEc
Q 007645 267 IVHCSRCLIPFTA-------YNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 267 lV~~s~vL~h~~~-------d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+.++..-- |+.. -...++.+..-+|++||.++.++
T Consensus 142 mff~fpdp-Hfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 142 MFFLFPDP-HFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ceeecCCh-hHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 22221111 2110 11267899999999999999876
No 342
>PRK07402 precorrin-6B methylase; Provisional
Probab=93.70 E-value=0.6 Score=45.62 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=27.4
Q ss_pred CChhhhHHhhcccccCCcEEEEeCCh-HHHHHHHHhHhcc
Q 007645 526 CSLVDLMVEMDRMLRPEGTVVVRDSP-EVIDKVSRIANTV 564 (595)
Q Consensus 526 c~~~~~llEmdRiLRP~G~~i~rd~~-~~~~~~~~~~~~~ 564 (595)
..+..++-++-|+|+|||.+++-... +.+.++.+..+.+
T Consensus 119 ~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~ 158 (196)
T PRK07402 119 RPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQL 158 (196)
T ss_pred cCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhc
Confidence 35678999999999999999987432 3344455555444
No 343
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=93.69 E-value=0.016 Score=51.25 Aligned_cols=99 Identities=18% Similarity=0.238 Sum_probs=55.1
Q ss_pred eEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhh----cc-------chhhhcccCCCCCCCCCccchhhccC
Q 007645 444 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RG-------LIGVYHDWCEPFSTYPRTYDLIHVSG 511 (595)
Q Consensus 444 nvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~e----RG-------lig~~~~wce~f~typrtyDl~H~~~ 511 (595)
.|||++||.|.|+.++...- .-+++=.|-. ..+.++-. .| ..|-+.+..+.++. ..||+|=++-
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~--~~~D~Iv~np 78 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPD--GKFDLIVTNP 78 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTT--T-EEEEEE--
T ss_pred EEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccC--ceeEEEEECC
Confidence 69999999999998886543 2233333322 22221111 11 12333333333433 8899999888
Q ss_pred ccccccCCCCCCCCCChhhhHHhhcccccCCcEEEE
Q 007645 512 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 512 ~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
-|......... .+=....++-++.|+|||||.+++
T Consensus 79 P~~~~~~~~~~-~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 79 PYGPRSGDKAA-LRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp STTSBTT-----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCccccccchh-hHHHHHHHHHHHHHHcCCCeEEEE
Confidence 88754200011 111445788899999999999876
No 344
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=93.65 E-value=0.0098 Score=51.66 Aligned_cols=92 Identities=24% Similarity=0.229 Sum_probs=56.0
Q ss_pred EEecccchhHHHhhhcCCC--eEEEEeccCCCC-CchhHHhhccc-hh-hhcccCCCCCCCC---CccchhhccCc-ccc
Q 007645 445 IMDMNAFFGGFAAALTSDP--VWVMNVVPARKS-STLSVIYDRGL-IG-VYHDWCEPFSTYP---RTYDLIHVSGI-ESL 515 (595)
Q Consensus 445 vmDm~~~~g~faa~l~~~~--vwvmnv~p~~~~-~~l~~i~eRGl-ig-~~~~wce~f~typ---rtyDl~H~~~~-~s~ 515 (595)
|||+|||.|.+..+|.+.= --...+.-.|-. +.|..+.++.- .| -.+--|.-+...| .+||+|=+.++ +.+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999886530 111345555644 67777666662 11 1111122222222 69999999777 554
Q ss_pred ccCCCCCCCCCChhhhHHhhcccccCCc
Q 007645 516 IKNPGSNKNSCSLVDLMVEMDRMLRPEG 543 (595)
Q Consensus 516 ~~~~~~~~~~c~~~~~llEmdRiLRP~G 543 (595)
- +.=.++.+|=+|=|+|||||
T Consensus 81 -~------~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 -L------SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -S------SHHHHHHHHHHHHHTEEEEE
T ss_pred -C------CHHHHHHHHHHHHHHhCCCC
Confidence 3 45567789999999999998
No 345
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=93.54 E-value=0.11 Score=47.63 Aligned_cols=41 Identities=7% Similarity=0.041 Sum_probs=33.9
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER 244 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er 244 (595)
++||+|||.|.++..++..+.. ..+.++|.++.+.+.++++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~-~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAE-GRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCC-CEEEEEecCHHHHHHHHHH
Confidence 5899999999999999887543 3788889999998877665
No 346
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.51 E-value=0.34 Score=51.92 Aligned_cols=93 Identities=16% Similarity=0.172 Sum_probs=66.3
Q ss_pred ceEEEECCC-CcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccC
Q 007645 202 RTALDMGCG-VASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY 280 (595)
Q Consensus 202 r~VLDIGCG-tG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d 280 (595)
..|+=+|+| .|..+..+++. ....++.+|.+++-.+.|++-|....+...+.....--.+.||+|+..-.
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka--~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~------- 238 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKA--MGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG------- 238 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHH--cCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-------
Confidence 377777777 45888888875 22588889999999999999987655443322222211234999986643
Q ss_pred HHHHHHHHHhhcCCCcEEEEEcCC
Q 007645 281 NATYLIEVDRLLRPGGYLVISGPP 304 (595)
Q Consensus 281 ~~~~L~Ei~RvLRPGG~lvls~p~ 304 (595)
...+....+.||+||.+++.+.+
T Consensus 239 -~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 -PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -hhhHHHHHHHHhcCCEEEEECCC
Confidence 34578889999999999999864
No 347
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=93.47 E-value=0.52 Score=48.41 Aligned_cols=124 Identities=21% Similarity=0.244 Sum_probs=72.0
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
+.+|+|||||.=-++........ ...+.+.|++..++++...- +.+..+...|...-+ +....|+++..-++ |
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~-~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~l-p 182 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAP-GATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKTL-P 182 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSST-T-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET-H-H
T ss_pred CchhhhhhccCCceehhhcccCC-CcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHHH-H
Confidence 56999999999999988776633 34899999999999876543 667777776654443 45779999988777 4
Q ss_pred cccCH--HHHHHHHHhhcCCCcEEEEEcCCCCCCCCchh-----HHHHHHHHHHcCcEEE
Q 007645 277 FTAYN--ATYLIEVDRLLRPGGYLVISGPPVQWPKQDKE-----WADLQAVARALCYELI 329 (595)
Q Consensus 277 ~~~d~--~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~-----w~~l~~la~~~~w~~v 329 (595)
..+.. +..+ ++...++ .=.+++|-|-..-..+... -..++.++..-+|..-
T Consensus 183 ~le~q~~g~g~-~ll~~~~-~~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~ 240 (251)
T PF07091_consen 183 CLERQRRGAGL-ELLDALR-SPHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVD 240 (251)
T ss_dssp HHHHHSTTHHH-HHHHHSC-ESEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEE
T ss_pred HHHHHhcchHH-HHHHHhC-CCeEEEeccccccccCccccccCHHHHHHHhcccCCceee
Confidence 33221 2223 3333332 3356667663333333322 2236667666677643
No 348
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=93.43 E-value=0.098 Score=58.27 Aligned_cols=69 Identities=16% Similarity=0.231 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccc
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTR 256 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~ 256 (595)
+..+...+.+.+.+..++ .+||+-||||.++..+++. +..+.|+++++..++.|+.+ |+ ++.|+++.++
T Consensus 368 aevLys~i~e~~~l~~~k--~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE 441 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGLPADK--TLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAE 441 (534)
T ss_pred HHHHHHHHHHHhCCCCCc--EEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCccceeeeecchh
Confidence 344455666777766665 8999999999999999886 34678889999999988765 44 4677776443
No 349
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=93.36 E-value=0.68 Score=50.66 Aligned_cols=131 Identities=21% Similarity=0.254 Sum_probs=78.9
Q ss_pred cCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC-eEEEEcccccCC---CCCCceeEE
Q 007645 197 TGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLP---FPAFSFDIV 268 (595)
Q Consensus 197 ~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~-~~~~~~d~~~LP---fpd~sFDlV 268 (595)
.+..+.+|||+.+..|.=+.+++..-.....|.+.|.+.+.+....++ |.. ......|...+| |+. +||-|
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-cccee
Confidence 344455999999999955555554422223566789888777655443 665 344455665554 554 89999
Q ss_pred E----EcC--CCcc-----ccc----------CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHc-Cc
Q 007645 269 H----CSR--CLIP-----FTA----------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARAL-CY 326 (595)
Q Consensus 269 ~----~s~--vL~h-----~~~----------d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~-~w 326 (595)
. |+. ++.- +.. -..++|..+...+++||+++.++-.+.-.+.+ ..+..++++. +.
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE---~vV~yaL~K~p~~ 393 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENE---AVVDYALKKRPEV 393 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhH---HHHHHHHHhCCce
Confidence 8 444 2210 000 12367888889999999999998755444333 2344455544 55
Q ss_pred EEEEe
Q 007645 327 ELIAV 331 (595)
Q Consensus 327 ~~v~~ 331 (595)
+++-.
T Consensus 394 kL~p~ 398 (460)
T KOG1122|consen 394 KLVPT 398 (460)
T ss_pred Eeccc
Confidence 55433
No 350
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=93.30 E-value=0.077 Score=58.83 Aligned_cols=103 Identities=19% Similarity=0.266 Sum_probs=55.3
Q ss_pred eeEEecccchhHHHhhhcCC---CeEEEEeccCCCC-CchhHHhh----ccchh---hhcccCCCCCCCCCccchhhccC
Q 007645 443 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYD----RGLIG---VYHDWCEPFSTYPRTYDLIHVSG 511 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~---~vwvmnv~p~~~~-~~l~~i~e----RGlig---~~~~wce~f~typrtyDl~H~~~ 511 (595)
.+|+|||||.|+++.++.+. .- .|+-.|-. +.+..+-+ .|+-. +-.|..+....++.+||+|=++-
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~---~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 328 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTG---KVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDA 328 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcC
Confidence 57999999999998877542 21 23333433 44444332 24311 12333332223457899985432
Q ss_pred ccccc----cCCCCC--CCCCCh-------hhhHHhhcccccCCcEEEEe
Q 007645 512 IESLI----KNPGSN--KNSCSL-------VDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 512 ~~s~~----~~~~~~--~~~c~~-------~~~llEmdRiLRP~G~~i~r 548 (595)
-.|.. +.|... .+.-.+ ..+|-+.=|+|||||.+|++
T Consensus 329 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 329 PCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS 378 (444)
T ss_pred CCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 11110 111110 011111 25788899999999999986
No 351
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=93.08 E-value=0.14 Score=52.86 Aligned_cols=90 Identities=19% Similarity=0.426 Sum_probs=61.5
Q ss_pred CeeeEEecccchhHHHhhhcCCCeEEEEeccCCCCCch-hHHhhccc--hhhhcccCCCCCCCCCccchhhccCcccccc
Q 007645 441 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTL-SVIYDRGL--IGVYHDWCEPFSTYPRTYDLIHVSGIESLIK 517 (595)
Q Consensus 441 ~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~~~l-~~i~eRGl--ig~~~~wce~f~typrtyDl~H~~~~~s~~~ 517 (595)
+..++||+|||-|+--+.|.. ..=+|.-++..-+. .---+||+ +.+. ||-+. +..||+|-|-++.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~---~f~~v~aTE~S~~Mr~rL~~kg~~vl~~~-~w~~~----~~~fDvIscLNvL---- 161 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAP---LFKEVYATEASPPMRWRLSKKGFTVLDID-DWQQT----DFKFDVISCLNVL---- 161 (265)
T ss_pred cCCceEEecCCCcHHHHHHHh---hcceEEeecCCHHHHHHHHhCCCeEEehh-hhhcc----CCceEEEeehhhh----
Confidence 577899999999998888743 11224444433222 23456885 4333 36532 4679999977665
Q ss_pred CCCCCCCCCChh-hhHHhhcccccCCcEEEEe
Q 007645 518 NPGSNKNSCSLV-DLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 518 ~~~~~~~~c~~~-~~llEmdRiLRP~G~~i~r 548 (595)
+||.-. .+|-+|-+-|+|+|.+|+.
T Consensus 162 ------DRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 162 ------DRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred ------hccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 578755 6788999999999999985
No 352
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=93.06 E-value=0.074 Score=56.61 Aligned_cols=118 Identities=13% Similarity=0.087 Sum_probs=59.5
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHH----hhccchhhhcccCCCCCCCC---CccchhhccCccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVI----YDRGLIGVYHDWCEPFSTYP---RTYDLIHVSGIES 514 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i----~eRGlig~~~~wce~f~typ---rtyDl~H~~~~~s 514 (595)
..|||.+||.|+|+..+.... .+|+=.|-. ..+..+ -.-|+-. ++--+..+...| .+||+|=++--|.
T Consensus 184 ~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~D~Iv~dPPyg 259 (329)
T TIGR01177 184 DRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESVDAIATDPPYG 259 (329)
T ss_pred CEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCCCEEEECCCCc
Confidence 379999999999954432221 123333432 223221 1124433 111111122222 6899988764433
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCChHHHHHHHHhHhccCc
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRW 566 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~~~~~W 566 (595)
.-..............+|-|+-|+|+|||++++--... ..++++++.--|
T Consensus 260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 21100000011234689999999999999887653221 134455666555
No 353
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=93.02 E-value=0.083 Score=53.73 Aligned_cols=93 Identities=14% Similarity=0.215 Sum_probs=65.9
Q ss_pred eEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccch-hhhcccCCCCCC----CC-CccchhhccCccccc
Q 007645 444 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLI-GVYHDWCEPFST----YP-RTYDLIHVSGIESLI 516 (595)
Q Consensus 444 nvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGli-g~~~~wce~f~t----yp-rtyDl~H~~~~~s~~ 516 (595)
.|||+|||-|.++-.|.... -||.-.|.. ..+.++-.+.+. |+.-||- ++.+ -. -+||.|=|..+..|+
T Consensus 62 ~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~-~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 62 RVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYR-QATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred eEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccch-hhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 49999999999999997766 577777766 677776544432 1221211 1111 11 478888888888877
Q ss_pred cCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 517 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 517 ~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
. +.+.+|.+..+.|||||.+.++.
T Consensus 138 ~---------dp~~~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 138 P---------DPESFLRACAKLVKPGGILFLST 161 (243)
T ss_pred C---------CHHHHHHHHHHHcCCCcEEEEec
Confidence 4 45569999999999999999984
No 354
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=92.89 E-value=0.47 Score=50.05 Aligned_cols=108 Identities=16% Similarity=0.208 Sum_probs=52.0
Q ss_pred CeeecCCCCCc-ccccHHHHHHHHHhhccccCCC---cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHH
Q 007645 168 PYFTFPGGGTM-FADGADKYIDKLKQYIPITGGT---LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE 243 (595)
Q Consensus 168 ~~~~fp~~g~~-F~~~a~~yi~~L~~~l~~~~g~---~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~e 243 (595)
+.|.+|.+.-- --.+...|+..|.+++...... ..++||||+|....-..|..+ ....++.+.|+++..++.|++
T Consensus 66 ~~wdiP~~~LcP~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~-~~~W~fvaTdID~~sl~~A~~ 144 (299)
T PF05971_consen 66 DVWDIPEGRLCPPIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAK-LYGWSFVATDIDPKSLESARE 144 (299)
T ss_dssp ------TTS----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHH-HH--EEEEEES-HHHHHHHHH
T ss_pred ccccCCCCCcCCCCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhh-hcCCeEEEecCCHHHHHHHHH
Confidence 34667755411 1123456777777777643322 458999999988665555443 235689999999999999986
Q ss_pred c-----CCC--eEEEEcccc-----cCCCCCCceeEEEEcCCCcc
Q 007645 244 R-----GIP--AFVAMLGTR-----RLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 244 r-----g~~--~~~~~~d~~-----~LPfpd~sFDlV~~s~vL~h 276 (595)
. ++. +.+...... .+-.++..||+..|+--|+.
T Consensus 145 nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 145 NVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp HHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE-----S
T ss_pred HHHhccccccceEEEEcCCccccchhhhcccceeeEEecCCcccc
Confidence 4 232 444332211 12233468999999987744
No 355
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=92.74 E-value=0.16 Score=56.16 Aligned_cols=112 Identities=23% Similarity=0.277 Sum_probs=58.6
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHh---hc-cchhhh--cccCCCC--CC--CCCccchhhcc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIY---DR-GLIGVY--HDWCEPF--ST--YPRTYDLIHVS 510 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~---eR-Glig~~--~~wce~f--~t--yprtyDl~H~~ 510 (595)
.+|+||+||.||++.++... + .-.|+-.|-. +.|..+- +| |+-..+ .+ ...+ .. -+.+||.|-.+
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~--~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~-~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAP--QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKD-GDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEec-cccccccccccccccCEEEEc
Confidence 58999999999999887542 1 0123333433 4444332 22 431011 11 1111 11 13689999854
Q ss_pred Ccccc---c-cCCCCCC--CCCC-------hhhhHHhhcccccCCcEEEEe-------CChHHHHHH
Q 007645 511 GIESL---I-KNPGSNK--NSCS-------LVDLMVEMDRMLRPEGTVVVR-------DSPEVIDKV 557 (595)
Q Consensus 511 ~~~s~---~-~~~~~~~--~~c~-------~~~~llEmdRiLRP~G~~i~r-------d~~~~~~~~ 557 (595)
--.|. + +.|...- ..-. -..+|-++=|+|||||.++++ ++.+++.+.
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~ 383 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAF 383 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHH
Confidence 22221 1 1010000 0000 136899999999999999997 555555544
No 356
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=92.58 E-value=0.24 Score=42.51 Aligned_cols=94 Identities=21% Similarity=0.277 Sum_probs=56.1
Q ss_pred EEecccchhH--HHhhhcCCCeEEEEeccCCCC-CchhHHhhcc-------chhhhcccCCCCCCCC--CccchhhccCc
Q 007645 445 IMDMNAFFGG--FAAALTSDPVWVMNVVPARKS-STLSVIYDRG-------LIGVYHDWCEPFSTYP--RTYDLIHVSGI 512 (595)
Q Consensus 445 vmDm~~~~g~--faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG-------lig~~~~wce~f~typ--rtyDl~H~~~~ 512 (595)
++|+|||.|. +.+.+......+.. .+.. ..+...-.+. +-....+.....-.++ .+||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVG---VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEE---EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 9999999998 66666665433333 2222 2222211111 1122333332111222 389999 7666
Q ss_pred cccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh
Q 007645 513 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP 551 (595)
Q Consensus 513 ~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~ 551 (595)
...+. . ...++-|+-|+|+|+|.+++.+..
T Consensus 128 ~~~~~------~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLL------P---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcC------C---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 66553 2 788999999999999999997543
No 357
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=92.56 E-value=0.9 Score=47.89 Aligned_cols=107 Identities=15% Similarity=0.259 Sum_probs=59.3
Q ss_pred eEEecccchhHHHhhhcCCC---eEEEEeccCCCC--CchhHHhhccchh--hhcccCCCCCCCCCccchhhccCccccc
Q 007645 444 NIMDMNAFFGGFAAALTSDP---VWVMNVVPARKS--STLSVIYDRGLIG--VYHDWCEPFSTYPRTYDLIHVSGIESLI 516 (595)
Q Consensus 444 nvmDm~~~~g~faa~l~~~~---vwvmnv~p~~~~--~~l~~i~eRGlig--~~~~wce~f~typrtyDl~H~~~~~s~~ 516 (595)
+|+|.|||+|=.++.|.+.. -++|-=+-..+- .+.. +-+-|+-+ ++++ .-|+-=...||+|=++--|-.
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~N-l~~N~~~~~~v~~s--~~~~~v~~kfd~IisNPPfh~- 236 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKN-LAANGVENTEVWAS--NLYEPVEGKFDLIISNPPFHA- 236 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHh-HHHcCCCccEEEEe--cccccccccccEEEeCCCccC-
Confidence 99999999999999996554 456632221110 1111 12223333 2221 223333358999876666652
Q ss_pred cCCCCCCCCCCh----hhhHHhhcccccCCcEEEE--eCChHHHHHHHHhH
Q 007645 517 KNPGSNKNSCSL----VDLMVEMDRMLRPEGTVVV--RDSPEVIDKVSRIA 561 (595)
Q Consensus 517 ~~~~~~~~~c~~----~~~llEmdRiLRP~G~~i~--rd~~~~~~~~~~~~ 561 (595)
.+--. ..++-+-=+-|++||-+.| ......-.+++++-
T Consensus 237 -------G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~F 280 (300)
T COG2813 237 -------GKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELF 280 (300)
T ss_pred -------CcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhc
Confidence 11111 1477777889999997665 44444445555543
No 358
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=92.47 E-value=0.33 Score=49.82 Aligned_cols=131 Identities=15% Similarity=0.218 Sum_probs=83.3
Q ss_pred CCCCeeeEEecccchhHHHhhhcCC-C-eEEE--EeccCCCC-CchhH----Hhhcc--chhhhcccCCCCCCCCCccch
Q 007645 438 GTPAIRNIMDMNAFFGGFAAALTSD-P-VWVM--NVVPARKS-STLSV----IYDRG--LIGVYHDWCEPFSTYPRTYDL 506 (595)
Q Consensus 438 ~~~~~RnvmDm~~~~g~faa~l~~~-~-vwvm--nv~p~~~~-~~l~~----i~eRG--lig~~~~wce~f~typrtyDl 506 (595)
.......|+|+|||.|.-+=+|..+ + +=+. =.-+.... .+-.+ .-||- +=+=+.+|+.++.. .+||+
T Consensus 41 ~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~--~~fD~ 118 (248)
T COG4123 41 PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF--ASFDL 118 (248)
T ss_pred ccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc--cccCE
Confidence 3344889999999999777666554 2 2221 11111110 11111 22332 22344556666554 57999
Q ss_pred hhccCcccccc---------CCCCCCCCCChhhhHHhhcccccCCcEEEEeCChHHHHHHHHhHhccCceeEE
Q 007645 507 IHVSGIESLIK---------NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAV 570 (595)
Q Consensus 507 ~H~~~~~s~~~---------~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~~~~~W~~~~ 570 (595)
|=|+--|=.-- ..+.....|++++++-=--++|+|+|++.+=-.++.+.++-.++++++|....
T Consensus 119 Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 119 IICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKR 191 (248)
T ss_pred EEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceE
Confidence 88775542110 11113355888899998999999999999988889999999999999998654
No 359
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=92.34 E-value=0.23 Score=51.04 Aligned_cols=114 Identities=17% Similarity=0.193 Sum_probs=66.3
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCCCeEE------EEeccCC-CCCchhHHhhccchhhhc-c----c-C---CCCCCC
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSDPVWV------MNVVPAR-KSSTLSVIYDRGLIGVYH-D----W-C---EPFSTY 500 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~~vwv------mnv~p~~-~~~~l~~i~eRGlig~~~-~----w-c---e~f~ty 500 (595)
++.+.-=++|||.+|+|--|=.+++ -|=. =+|.-.| .+++|.+.-.|-.=+-|- + | | |.++ |
T Consensus 96 L~p~~~m~~lDvaGGTGDiaFril~-~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp-F 173 (296)
T KOG1540|consen 96 LGPGKGMKVLDVAGGTGDIAFRILR-HVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP-F 173 (296)
T ss_pred cCCCCCCeEEEecCCcchhHHHHHH-hhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-C
Confidence 3444457899999999966555432 2211 2333334 348888876665322121 1 2 2 3455 5
Q ss_pred C-CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCChHHH-HHHHHhH
Q 007645 501 P-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVI-DKVSRIA 561 (595)
Q Consensus 501 p-rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~~~-~~~~~~~ 561 (595)
| .+||+.--+.-.-.+ =.++..|-|+-|+|+|||-|-+=+-..+- +.++.+.
T Consensus 174 dd~s~D~yTiafGIRN~---------th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy 227 (296)
T KOG1540|consen 174 DDDSFDAYTIAFGIRNV---------THIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFY 227 (296)
T ss_pred CCCcceeEEEecceecC---------CCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHH
Confidence 5 899986533222211 23678999999999999998876554443 3344443
No 360
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=92.16 E-value=0.21 Score=50.30 Aligned_cols=95 Identities=9% Similarity=-0.003 Sum_probs=57.3
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-Cchh-HHhhccchhhh--------------cccCCCCCCC---C-C
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLS-VIYDRGLIGVY--------------HDWCEPFSTY---P-R 502 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~-~i~eRGlig~~--------------~~wce~f~ty---p-r 502 (595)
..|||.|||.|--|..|.++.. +|+-+|-. .-+. ++-++|+.... +-+|.-|-.+ + .
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 3899999999999999987643 44444433 2233 24467764322 1122222221 1 3
Q ss_pred ccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEE
Q 007645 503 TYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 503 tyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
+||+|-...+|.+. ....-..++-.|-++|+|||.+++
T Consensus 116 ~fd~v~D~~~~~~l-------~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 116 DVDAVYDRAALIAL-------PEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CeeEEEehHhHhhC-------CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 66777655555543 222334789999999999996443
No 361
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=91.94 E-value=0.25 Score=52.13 Aligned_cols=134 Identities=16% Similarity=0.273 Sum_probs=79.3
Q ss_pred CCCCCCcccCCCCccccccccChhhhhhhhhhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCC-eEEEE
Q 007645 390 TIPKWPQRLTKAPSRALVMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDP-VWVMN 468 (595)
Q Consensus 390 ~~~~wp~rl~~~p~~~~~~~~~~~~f~~d~~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~-vwvmn 468 (595)
.+.||=+ -|..+.-+-+..|+ .+| -+|.+-..+ +..=+=|.|+|+|||-|-|.=.|.... -.|.-
T Consensus 78 ~l~PWRK----GPf~l~gi~IDtEW-rSd-~KW~rl~p~--------l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViG 143 (315)
T PF08003_consen 78 ALMPWRK----GPFSLFGIHIDTEW-RSD-WKWDRLLPH--------LPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIG 143 (315)
T ss_pred hhCCccc----CCcccCCEeecccc-ccc-chHHHHHhh--------hCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEE
Confidence 4666633 24444333345444 222 455554444 322233799999999999997775543 35555
Q ss_pred eccCCCCCchhHHhhccchhhhc-ccC-----CCCCCCCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCC
Q 007645 469 VVPARKSSTLSVIYDRGLIGVYH-DWC-----EPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPE 542 (595)
Q Consensus 469 v~p~~~~~~l~~i~eRGlig~~~-~wc-----e~f~typrtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~ 542 (595)
+=|..- -.+|+-+=+-++|.-. -.. |..+. ..+||+|=|.|++= ||=+-.+.|.++=..||||
T Consensus 144 iDP~~l-f~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLY---------Hrr~Pl~~L~~Lk~~L~~g 212 (315)
T PF08003_consen 144 IDPSPL-FYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLY---------HRRSPLDHLKQLKDSLRPG 212 (315)
T ss_pred ECCChH-HHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehh---------ccCCHHHHHHHHHHhhCCC
Confidence 555433 2334333334443210 011 22343 58999999888875 4455567889999999999
Q ss_pred cEEEEe
Q 007645 543 GTVVVR 548 (595)
Q Consensus 543 G~~i~r 548 (595)
|-+|+-
T Consensus 213 GeLvLE 218 (315)
T PF08003_consen 213 GELVLE 218 (315)
T ss_pred CEEEEE
Confidence 999974
No 362
>PRK00811 spermidine synthase; Provisional
Probab=91.92 E-value=0.45 Score=49.73 Aligned_cols=103 Identities=13% Similarity=0.167 Sum_probs=56.4
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhccchhh--------------hcccCCCCCCC
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGLIGV--------------YHDWCEPFSTY 500 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eRGlig~--------------~~~wce~f~ty 500 (595)
+....-++|||+|||.|+.+..+++. ++- +|+-++-. ..+.++-+ .+.- ..|--+-..+-
T Consensus 72 ~~~~~p~~VL~iG~G~G~~~~~~l~~~~~~--~V~~VEid~~vv~~a~~--~~~~~~~~~~~d~rv~v~~~Da~~~l~~~ 147 (283)
T PRK00811 72 FAHPNPKRVLIIGGGDGGTLREVLKHPSVE--KITLVEIDERVVEVCRK--YLPEIAGGAYDDPRVELVIGDGIKFVAET 147 (283)
T ss_pred hhCCCCCEEEEEecCchHHHHHHHcCCCCC--EEEEEeCCHHHHHHHHH--HhHHhccccccCCceEEEECchHHHHhhC
Confidence 33345689999999999999988776 443 23333322 33333322 1111 11111111222
Q ss_pred CCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 501 PRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 501 prtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
+.+||+|=++. +.++. ....---..++-++-|+|+|||.+++.
T Consensus 148 ~~~yDvIi~D~-~dp~~----~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 148 ENSFDVIIVDS-TDPVG----PAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred CCcccEEEECC-CCCCC----chhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 47899986432 22221 111111245677889999999999986
No 363
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=91.76 E-value=0.37 Score=51.63 Aligned_cols=80 Identities=16% Similarity=0.103 Sum_probs=37.5
Q ss_pred cCCCcceEEEECCCCcHHHHHHhhc------------C---CceEEEEeecCcH---HHHHHH-------HHcCCCeEEE
Q 007645 197 TGGTLRTALDMGCGVASFGGSMLSE------------N---ILTLSFAPRDSHK---AQIQFA-------LERGIPAFVA 251 (595)
Q Consensus 197 ~~g~~r~VLDIGCGtG~~a~~La~~------------g---v~~~~v~~vD~s~---~~l~~A-------~erg~~~~~~ 251 (595)
..++.-+|+|+||..|..+..+.+. + .....+.-.|.-. +.+-.. .... +..|.
T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~-~~~f~ 91 (334)
T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKF-RNYFV 91 (334)
T ss_dssp TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHT-TSEEE
T ss_pred CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCC-ceEEE
Confidence 3445668999999999777665543 0 1123444444221 111110 1112 22232
Q ss_pred E---cccccCCCCCCceeEEEEcCCCcccc
Q 007645 252 M---LGTRRLPFPAFSFDIVHCSRCLIPFT 278 (595)
Q Consensus 252 ~---~d~~~LPfpd~sFDlV~~s~vL~h~~ 278 (595)
. +....-=||+++.|++||+.+| ||.
T Consensus 92 ~gvpgSFy~rLfP~~Svh~~~Ss~al-HWL 120 (334)
T PF03492_consen 92 SGVPGSFYGRLFPSNSVHFGHSSYAL-HWL 120 (334)
T ss_dssp EEEES-TTS--S-TT-EEEEEEES-T-TB-
T ss_pred EecCchhhhccCCCCceEEEEEechh-hhc
Confidence 2 2233334889999999999999 765
No 364
>PRK13699 putative methylase; Provisional
Probab=91.60 E-value=0.52 Score=47.72 Aligned_cols=83 Identities=12% Similarity=0.201 Sum_probs=50.1
Q ss_pred EEEcccccC--CCCCCceeEEEEcCCCc----c-----cc-----cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchh
Q 007645 250 VAMLGTRRL--PFPAFSFDIVHCSRCLI----P-----FT-----AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKE 313 (595)
Q Consensus 250 ~~~~d~~~L--Pfpd~sFDlV~~s~vL~----h-----~~-----~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~ 313 (595)
+..+|+.++ .++++++|+|++.--.. . +. +-....+.|+.|+|||||.+++... |. .
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~---~~----~ 76 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYG---WN----R 76 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEec---cc----c
Confidence 344454332 46788888888863221 0 00 0123678999999999999987532 21 1
Q ss_pred HHHHHHHHHHcCcEEEEeecceeEeeccCC
Q 007645 314 WADLQAVARALCYELIAVDGNTVIWKKPVG 343 (595)
Q Consensus 314 w~~l~~la~~~~w~~v~~~~~~~iw~K~~~ 343 (595)
...+...+++.+|.+. +..||.|+..
T Consensus 77 ~~~~~~al~~~GF~l~----~~IiW~K~~~ 102 (227)
T PRK13699 77 VDRFMAAWKNAGFSVV----GHLVFTKNYT 102 (227)
T ss_pred HHHHHHHHHHCCCEEe----eEEEEECCCC
Confidence 2234556677788754 3457998643
No 365
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=91.42 E-value=0.22 Score=50.55 Aligned_cols=108 Identities=18% Similarity=0.255 Sum_probs=61.6
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc-------cchhh-hcccCCCCCCCCCccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR-------GLIGV-YHDWCEPFSTYPRTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR-------Glig~-~~~wce~f~typrtyDl~H~~~~~ 513 (595)
++|||+|||.|+|.-.|....+ =.|+-.|.. ++|.--+.. +..-+ +-+|-+-. .|++-++-.|
T Consensus 77 ~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~------~d~~~~Dvsf 148 (228)
T TIGR00478 77 KIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIF------PDFATFDVSF 148 (228)
T ss_pred CEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcC------CCceeeeEEE
Confidence 5899999999999999987643 223334433 444431211 11111 22344332 2444444334
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEE-------------------eCCh---HHHHHHHHhHhccCceeEEe
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV-------------------RDSP---EVIDKVSRIANTVRWTAAVH 571 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~-------------------rd~~---~~~~~~~~~~~~~~W~~~~~ 571 (595)
. ++.-+|-.|.+.|+| |.+|+ +|.. .+++++...+..+-|++.-.
T Consensus 149 i------------S~~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (228)
T TIGR00478 149 I------------SLISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKI 215 (228)
T ss_pred e------------ehHhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeE
Confidence 3 222367778888888 77664 3432 55777777778888876543
No 366
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=91.29 E-value=3.4 Score=42.97 Aligned_cols=127 Identities=12% Similarity=0.074 Sum_probs=77.8
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCC--CCceeEEEEcCCCcccc--
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFP--AFSFDIVHCSRCLIPFT-- 278 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfp--d~sFDlV~~s~vL~h~~-- 278 (595)
+++|+-||.|.+...+.+.|.. .+..+|+++.+++..+.+.... +...|+..+... ...+|+++...-=..+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~--~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~a 78 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFE--IVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIA 78 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCE--EEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCCCChhhhHH
Confidence 6899999999999999888754 4677899999998887775443 445565555322 35699999854221111
Q ss_pred ------cCH-HHHHHHHHhh---cCCCcEEEEEcC-CCCCC-CCchhHHHHHHHHHHcCcEEEEeecc
Q 007645 279 ------AYN-ATYLIEVDRL---LRPGGYLVISGP-PVQWP-KQDKEWADLQAVARALCYELIAVDGN 334 (595)
Q Consensus 279 ------~d~-~~~L~Ei~Rv---LRPGG~lvls~p-~~~~~-~~~~~w~~l~~la~~~~w~~v~~~~~ 334 (595)
++. ..++.++.|+ ++|. +++.+. +.... .....+..+.+.+++++|......-+
T Consensus 79 g~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~~l~ 144 (275)
T cd00315 79 GKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWKLLN 144 (275)
T ss_pred hhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEEEEE
Confidence 122 2344444444 4666 333332 22111 12334777778888889887655433
No 367
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=91.03 E-value=0.18 Score=50.60 Aligned_cols=95 Identities=11% Similarity=0.023 Sum_probs=52.0
Q ss_pred eeEEecccchhHHHhhhcCC--CeEEEEeccCCCCCchhHHhhccchhhh--------------cccCCCCCCCC----C
Q 007645 443 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKSSTLSVIYDRGLIGVY--------------HDWCEPFSTYP----R 502 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~~~l~~i~eRGlig~~--------------~~wce~f~typ----r 502 (595)
..|||.|||.|-.|.+|.++ .|.-+=++|.--. .+.-+.|+.... .-+|.-|-.++ .
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVE---QFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHH---HHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 58999999999999999776 4555555554111 112233332111 11222222222 2
Q ss_pred ccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEE
Q 007645 503 TYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 503 tyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
+||+|=...+|.+. ....-..++-.|-|.|||||.+++
T Consensus 113 ~fD~i~D~~~~~~l-------~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 113 PVDAVYDRAALIAL-------PEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred CcCEEEechhhccC-------CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 45555444444332 122234578889999999997444
No 368
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=91.02 E-value=1.4 Score=47.52 Aligned_cols=111 Identities=21% Similarity=0.192 Sum_probs=66.2
Q ss_pred cceEEEECCCCcHHHHHHhhcCCce---EEEEeecCcHHHHHHH---HHcCC--CeEEEEcccccCC---------CCCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILT---LSFAPRDSHKAQIQFA---LERGI--PAFVAMLGTRRLP---------FPAF 263 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~---~~v~~vD~s~~~l~~A---~erg~--~~~~~~~d~~~LP---------fpd~ 263 (595)
..+|||+.+..|+=++.|++..... --+++.|.+...+..- ..+-. ...+...++...| ....
T Consensus 156 ~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~~ 235 (375)
T KOG2198|consen 156 GDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQL 235 (375)
T ss_pred CCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhhhh
Confidence 4499999999999999888873321 1467788887655433 23322 1222222222222 2334
Q ss_pred ceeEEEEcC-C-----Cc-------c-ccc--------CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCc
Q 007645 264 SFDIVHCSR-C-----LI-------P-FTA--------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQD 311 (595)
Q Consensus 264 sFDlV~~s~-v-----L~-------h-~~~--------d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~ 311 (595)
.||-|.|-- | +. . |.. -.-.+|..-.++||+||.++.|+-..+-..++
T Consensus 236 ~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNE 305 (375)
T KOG2198|consen 236 KFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENE 305 (375)
T ss_pred hcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhH
Confidence 699999710 0 00 0 110 11267888999999999999998754444333
No 369
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=91.01 E-value=1.1 Score=45.71 Aligned_cols=111 Identities=17% Similarity=0.194 Sum_probs=67.9
Q ss_pred ccCCeeecCCCCC-cccccHHHHHHHHHhhccccC----CCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHH
Q 007645 165 ESGPYFTFPGGGT-MFADGADKYIDKLKQYIPITG----GTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQ 239 (595)
Q Consensus 165 ~e~~~~~fp~~g~-~F~~~a~~yi~~L~~~l~~~~----g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~ 239 (595)
+.-.+|.+|.+.- ---.+...|+..|.+++.... ++.-++||||.|.-..--.+--+ -.+.+++|.|++...++
T Consensus 38 Y~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~-eYgwrfvGseid~~sl~ 116 (292)
T COG3129 38 YAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVH-EYGWRFVGSEIDSQSLS 116 (292)
T ss_pred cceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccce-eecceeecCccCHHHHH
Confidence 3445799988751 122455678888888876443 34568999998866543333222 23558899999999888
Q ss_pred HHHHc-----CCC--eEEEEcccccCCC-----CCCceeEEEEcCCCcc
Q 007645 240 FALER-----GIP--AFVAMLGTRRLPF-----PAFSFDIVHCSRCLIP 276 (595)
Q Consensus 240 ~A~er-----g~~--~~~~~~d~~~LPf-----pd~sFDlV~~s~vL~h 276 (595)
.|+.. ++. +.+....-.+--| .++.||++.|+--|+.
T Consensus 117 sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 117 SAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred HHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEecCCCcch
Confidence 88654 222 2222211111112 2578999999987743
No 370
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=90.93 E-value=1.2 Score=43.93 Aligned_cols=100 Identities=19% Similarity=0.145 Sum_probs=55.1
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEc-ccccC--------CCCCCceeEEEEc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAML-GTRRL--------PFPAFSFDIVHCS 271 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~-d~~~L--------Pfpd~sFDlV~~s 271 (595)
..+|||+||..|+|+.-..++--+..-+.++|+-. ...-.| +.+..+ |..+- ..|+...|+|++-
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh----~~p~~G--a~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSD 143 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH----IEPPEG--ATIIQGNDVTDPETYRKIFEALPNRPVDVVLSD 143 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee----ccCCCC--cccccccccCCHHHHHHHHHhCCCCcccEEEec
Confidence 34999999999999988777732223455666521 111112 222222 22110 1367889999874
Q ss_pred CCCcccc----cCHH-------HHHHHHHhhcCCCcEEEEEcCCCCCCCCc
Q 007645 272 RCLIPFT----AYNA-------TYLIEVDRLLRPGGYLVISGPPVQWPKQD 311 (595)
Q Consensus 272 ~vL~h~~----~d~~-------~~L~Ei~RvLRPGG~lvls~p~~~~~~~~ 311 (595)
..- .-. .|.. .+|.-....++|+|.|+.-. |...+
T Consensus 144 Map-naTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~----w~g~e 189 (232)
T KOG4589|consen 144 MAP-NATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL----WDGSE 189 (232)
T ss_pred cCC-CCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE----ecCCc
Confidence 321 111 0111 33444556678999999875 55444
No 371
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=90.92 E-value=0.16 Score=49.05 Aligned_cols=107 Identities=22% Similarity=0.324 Sum_probs=58.2
Q ss_pred CeeeEEecccchh--HHHhhhcCCCeEEEEeccCCCCCchh---HHhhc------c-chhhhcccCCCCC--C-CCCccc
Q 007645 441 AIRNIMDMNAFFG--GFAAALTSDPVWVMNVVPARKSSTLS---VIYDR------G-LIGVYHDWCEPFS--T-YPRTYD 505 (595)
Q Consensus 441 ~~RnvmDm~~~~g--~faa~l~~~~vwvmnv~p~~~~~~l~---~i~eR------G-lig~~~~wce~f~--t-yprtyD 505 (595)
+-++||+.|||.| |.++|... ....|+-+|.+..++ .-.++ + +--.-.||.+... . -++.||
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~---~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLF---GAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT----T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred CCceEEEECCccchhHHHHHhcc---CCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 3469999999877 88888771 122334444443332 22222 1 2344568988641 1 247899
Q ss_pred hhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC------ChHHHHHHHH
Q 007645 506 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD------SPEVIDKVSR 559 (595)
Q Consensus 506 l~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd------~~~~~~~~~~ 559 (595)
+|-|+.|+=. .-..+.++-=++++|.|+|-+++.. ...+++++++
T Consensus 122 ~IlasDv~Y~---------~~~~~~L~~tl~~ll~~~~~vl~~~~~R~~~~~~F~~~~~k 172 (173)
T PF10294_consen 122 VILASDVLYD---------EELFEPLVRTLKRLLKPNGKVLLAYKRRRKSEQEFFDRLKK 172 (173)
T ss_dssp EEEEES--S----------GGGHHHHHHHHHHHBTT-TTEEEEEE-S-TGGCHHHHHH--
T ss_pred EEEEecccch---------HHHHHHHHHHHHHHhCCCCEEEEEeCEecHHHHHHHHHhhh
Confidence 9999998752 2345667777899999999988742 2345665554
No 372
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=90.57 E-value=0.6 Score=48.28 Aligned_cols=101 Identities=12% Similarity=0.178 Sum_probs=54.4
Q ss_pred CCCeeeEEecccchhHHHhhhcCCC-eEEEEeccCCCC-CchhHHhhccchhhh-------------cccCCCCCCCCCc
Q 007645 439 TPAIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLSVIYDRGLIGVY-------------HDWCEPFSTYPRT 503 (595)
Q Consensus 439 ~~~~RnvmDm~~~~g~faa~l~~~~-vwvmnv~p~~~~-~~l~~i~eRGlig~~-------------~~wce~f~typrt 503 (595)
..+-++||++|||.|+++..+.+.+ + .+|+-++-. +.+..+-+. +..+ .|-.+-....+++
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~~~--~~v~~veid~~vi~~a~~~--~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~ 145 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHKSV--EKATLVDIDEKVIELSKKF--LPSLAGSYDDPRVDLQIDDGFKFLADTENT 145 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCCCc--ceEEEEeCCHHHHHHHHHH--hHhhcccccCCceEEEECchHHHHHhCCCC
Confidence 3445699999999999998887654 3 223333322 222222211 1111 1111111123689
Q ss_pred cchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 504 YDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 504 yDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
||+|=.+.... +. ....--....+-.+-|+|+|||.+++.
T Consensus 146 yDvIi~D~~~~-~~----~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 146 FDVIIVDSTDP-VG----PAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred ccEEEEeCCCC-CC----cccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 99986543211 11 011111245666788999999999986
No 373
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=90.11 E-value=0.63 Score=48.81 Aligned_cols=101 Identities=13% Similarity=0.136 Sum_probs=70.1
Q ss_pred CcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc---------CCCeEEEEcccccC--CCCCCceeEE
Q 007645 200 TLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER---------GIPAFVAMLGTRRL--PFPAFSFDIV 268 (595)
Q Consensus 200 ~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er---------g~~~~~~~~d~~~L--Pfpd~sFDlV 268 (595)
..++||-||-|.|.+......+ -.+-++.-+|+.++.++..++- +..+.+..+|...+ -...+.||+|
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 3568999999999999988877 3344667778888888777654 34466666663222 2346899999
Q ss_pred EEcCCCccccc----CHHHHHHHHHhhcCCCcEEEEEc
Q 007645 269 HCSRCLIPFTA----YNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 269 ~~s~vL~h~~~----d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+.-..= ...+ ....+...+.+.||+||+++..+
T Consensus 200 i~dssd-pvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 200 ITDSSD-PVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEecCC-ccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 863211 1111 12367788999999999999976
No 374
>PLN03075 nicotianamine synthase; Provisional
Probab=90.09 E-value=0.68 Score=48.83 Aligned_cols=139 Identities=8% Similarity=0.084 Sum_probs=74.8
Q ss_pred CeeeEEecccchhHHHhhhcC----CCeEEEEeccCCCCCch-hHHh--hccchh-hhcccCCCCCCCC--Cccchhhcc
Q 007645 441 AIRNIMDMNAFFGGFAAALTS----DPVWVMNVVPARKSSTL-SVIY--DRGLIG-VYHDWCEPFSTYP--RTYDLIHVS 510 (595)
Q Consensus 441 ~~RnvmDm~~~~g~faa~l~~----~~vwvmnv~p~~~~~~l-~~i~--eRGlig-~~~~wce~f~typ--rtyDl~H~~ 510 (595)
.-+.|+|+|||-|++.|.+.- ...-+-|+=.....+.+ .-.+ +.||=. +-.-...+....+ ..||+|=+.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 568899999998877555432 22233333222111111 1111 234311 1111111122222 689999987
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh---HHHHHHHH--hHhccCceeEEeccCCCCCCCceEEE
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP---EVIDKVSR--IANTVRWTAAVHDKEPGSNGREKILV 585 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~---~~~~~~~~--~~~~~~W~~~~~~~~~~~~~~~~~l~ 585 (595)
....+ ++-.-..+|-.+=|.|||||++++|--. .++-.+-. ..+ -|+....-|-.++ .-+-++|
T Consensus 203 -ALi~~-------dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~--gf~~~~~~~P~~~-v~Nsvi~ 271 (296)
T PLN03075 203 -ALVGM-------DKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLR--GFEVLSVFHPTDE-VINSVII 271 (296)
T ss_pred -ccccc-------ccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCC--CeEEEEEECCCCC-ceeeEEE
Confidence 55444 2234467899999999999999999421 11111100 112 7887666554333 5678899
Q ss_pred EEecc
Q 007645 586 ATKSL 590 (595)
Q Consensus 586 ~~K~~ 590 (595)
++|.-
T Consensus 272 ~r~~~ 276 (296)
T PLN03075 272 ARKPG 276 (296)
T ss_pred EEeec
Confidence 99964
No 375
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=89.93 E-value=0.64 Score=45.86 Aligned_cols=92 Identities=17% Similarity=0.179 Sum_probs=63.5
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C-CCeEEEEcccccCCCCCCceeEEEEcCCCccc
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G-IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 277 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g-~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~ 277 (595)
++.|+|+|+|.++...++. +-.+.+++.++.....|.++ | .+..++..|+....| ...|+|+|-..=.-+
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaL 109 (252)
T COG4076 35 TFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTAL 109 (252)
T ss_pred ceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHh
Confidence 7999999999877665554 23566677888888888877 2 346788888888877 457999984311111
Q ss_pred c-cCHHHHHHHHHhhcCCCcEEE
Q 007645 278 T-AYNATYLIEVDRLLRPGGYLV 299 (595)
Q Consensus 278 ~-~d~~~~L~Ei~RvLRPGG~lv 299 (595)
. +....++..+...||-.+.++
T Consensus 110 i~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 110 IEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hcccccHHHHHHHHHhhcCCccc
Confidence 1 222366777777888888775
No 376
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=89.90 E-value=0.43 Score=52.77 Aligned_cols=105 Identities=20% Similarity=0.239 Sum_probs=55.1
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHh---hc-cc-hh-hhcccCCCCCCCC-CccchhhccCccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIY---DR-GL-IG-VYHDWCEPFSTYP-RTYDLIHVSGIES 514 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~---eR-Gl-ig-~~~~wce~f~typ-rtyDl~H~~~~~s 514 (595)
..|||+|||.|+++.+|...-- --.|+-.|.. ..+..+- +| |+ +- +.+|-.+....++ .+||+|=++--+|
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs 324 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCS 324 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCC
Confidence 4799999999999988754310 0123334433 4444332 22 32 11 1223332212233 6899987544332
Q ss_pred c----ccCCCCCCCCC---------ChhhhHHhhcccccCCcEEEEe
Q 007645 515 L----IKNPGSNKNSC---------SLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 515 ~----~~~~~~~~~~c---------~~~~~llEmdRiLRP~G~~i~r 548 (595)
. -+.|...-.+- ....+|-+.=++|+|||.++++
T Consensus 325 ~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvys 371 (427)
T PRK10901 325 ATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYA 371 (427)
T ss_pred cccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1 11111100011 1136788999999999999986
No 377
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=89.77 E-value=0.29 Score=50.50 Aligned_cols=102 Identities=25% Similarity=0.331 Sum_probs=52.6
Q ss_pred eeEEecccchhHHHhhhcC---CCeEEEEeccCCCC-CchhHHhh---c-cc--hhhh-cccCCCCCCCCCccchhhccC
Q 007645 443 RNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STLSVIYD---R-GL--IGVY-HDWCEPFSTYPRTYDLIHVSG 511 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~---~~vwvmnv~p~~~~-~~l~~i~e---R-Gl--ig~~-~~wce~f~typrtyDl~H~~~ 511 (595)
..|+||+||.|+++.+|.. ..- .|+-.|.. .-+..+-+ | |+ +-++ +|- ..++.....||.|=.+-
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~~~g---~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~-~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMKNEG---AIVANEFSKSRTKVLIANINRCGVLNVAVTNFDG-RVFGAAVPKFDAILLDA 148 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcCCCC---EEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCH-HHhhhhccCCCEEEEcC
Confidence 4699999999999876633 111 24444544 44443322 2 33 1111 121 11222224588886543
Q ss_pred cccc----ccCCCCCCCCC--C-------hhhhHHhhcccccCCcEEEEe
Q 007645 512 IESL----IKNPGSNKNSC--S-------LVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 512 ~~s~----~~~~~~~~~~c--~-------~~~~llEmdRiLRP~G~~i~r 548 (595)
-.|. -++|...-.+- . -..||-++=++|||||.++++
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2221 11111100000 1 125888899999999999997
No 378
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=89.70 E-value=6.8 Score=42.69 Aligned_cols=118 Identities=17% Similarity=0.137 Sum_probs=74.0
Q ss_pred HHHhhccccCCCcceEEEECCCCc----HHHHHHhhc--CCceEEEEeecC----cHHHHH--------HHHHcCCCeEE
Q 007645 189 KLKQYIPITGGTLRTALDMGCGVA----SFGGSMLSE--NILTLSFAPRDS----HKAQIQ--------FALERGIPAFV 250 (595)
Q Consensus 189 ~L~~~l~~~~g~~r~VLDIGCGtG----~~a~~La~~--gv~~~~v~~vD~----s~~~l~--------~A~erg~~~~~ 250 (595)
.|.+.+... +.-.|+|+|.|.| ++...|+.+ +.+.+.+++++. +...++ +|+..|++.+|
T Consensus 101 aIleA~~g~--~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef 178 (374)
T PF03514_consen 101 AILEAFEGE--RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEF 178 (374)
T ss_pred HHHHHhccC--cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEE
Confidence 344444433 2347999999999 455556655 567889999988 555554 45555888877
Q ss_pred EEcc---ccc-----CCCCCCceeEEEEcCCCcccccC------HHHHHHHHHhhcCCCcEEEEEcCCCCCCC
Q 007645 251 AMLG---TRR-----LPFPAFSFDIVHCSRCLIPFTAY------NATYLIEVDRLLRPGGYLVISGPPVQWPK 309 (595)
Q Consensus 251 ~~~d---~~~-----LPfpd~sFDlV~~s~vL~h~~~d------~~~~L~Ei~RvLRPGG~lvls~p~~~~~~ 309 (595)
...- .+. +...++..=+|.|.+.|+|+.++ +...+....|-|+|.- +++++...+...
T Consensus 179 ~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~v-vv~~E~ea~~n~ 250 (374)
T PF03514_consen 179 HPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKV-VVLVEQEADHNS 250 (374)
T ss_pred EecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCE-EEEEeecCCCCC
Confidence 6631 222 23344556667788888877622 3345667778889994 445555444433
No 379
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=89.32 E-value=1.8 Score=40.70 Aligned_cols=91 Identities=19% Similarity=0.212 Sum_probs=54.8
Q ss_pred EEeecCcHHHHHHHHHc----CC--CeEEEEcccccCC--CCCCceeEEEEcCCCccccc-C------H---HHHHHHHH
Q 007645 228 FAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLP--FPAFSFDIVHCSRCLIPFTA-Y------N---ATYLIEVD 289 (595)
Q Consensus 228 v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LP--fpd~sFDlV~~s~vL~h~~~-d------~---~~~L~Ei~ 289 (595)
+.++|+.+.+++.++++ +. ++.+...+=+++. .+.+.+|+|+.+.. .++. | + -.++..+.
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHHHHH
Confidence 56789999999998876 32 3666665544443 23358999997643 3331 1 1 27789999
Q ss_pred hhcCCCcEEEEEcCCCCCCCCchh---HHHHHHHHHHc
Q 007645 290 RLLRPGGYLVISGPPVQWPKQDKE---WADLQAVARAL 324 (595)
Q Consensus 290 RvLRPGG~lvls~p~~~~~~~~~~---w~~l~~la~~~ 324 (595)
++|+|||.+.++. +..+... .+.+.+.++++
T Consensus 80 ~lL~~gG~i~iv~----Y~GH~gG~eE~~av~~~~~~L 113 (140)
T PF06962_consen 80 ELLKPGGIITIVV----YPGHPGGKEESEAVEEFLASL 113 (140)
T ss_dssp HHEEEEEEEEEEE------STCHHHHHHHHHHHHHHTS
T ss_pred HhhccCCEEEEEE----eCCCCCCHHHHHHHHHHHHhC
Confidence 9999999999987 3444433 33455555543
No 380
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=88.85 E-value=3.5 Score=44.53 Aligned_cols=99 Identities=17% Similarity=0.099 Sum_probs=63.5
Q ss_pred ceEEEECCCC-cHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEccccc-----C-CC-CCCceeEEEEcC
Q 007645 202 RTALDMGCGV-ASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRR-----L-PF-PAFSFDIVHCSR 272 (595)
Q Consensus 202 r~VLDIGCGt-G~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~-----L-Pf-pd~sFDlV~~s~ 272 (595)
.+||.+|||. |..+..+++. +. ..+..++.++...+.+++.+. +.+......+ + .+ ..+.+|+|+-.-
T Consensus 186 ~~VlV~g~G~vG~~~~~la~~~g~--~~vi~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~v 262 (386)
T cd08283 186 DTVAVWGCGPVGLFAARSAKLLGA--ERVIAIDRVPERLEMARSHLG-AETINFEEVDDVVEALRELTGGRGPDVCIDAV 262 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHcCC-cEEEcCCcchHHHHHHHHHcCCCCCCEEEECC
Confidence 4899999987 7888888776 32 246777888999999988732 2222111110 1 11 234689988642
Q ss_pred CC-------ccc-------ccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 273 CL-------IPF-------TAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 273 vL-------~h~-------~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.- .+. ..+....+.++.+.|+++|.+++.+.
T Consensus 263 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 263 GMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 11 000 12345688999999999999999864
No 381
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=88.56 E-value=0.38 Score=48.82 Aligned_cols=34 Identities=12% Similarity=0.323 Sum_probs=24.3
Q ss_pred CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEE
Q 007645 502 RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 502 rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
.+||+|-.+.--. ...+++-++=|.|||||.+|+
T Consensus 143 ~~fD~VfiDa~k~------------~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 143 PEFDFAFVDADKP------------NYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred CCCCEEEECCCHH------------HHHHHHHHHHHhcCCCeEEEE
Confidence 5899987554322 233566677899999999996
No 382
>PLN02366 spermidine synthase
Probab=88.27 E-value=2.2 Score=45.32 Aligned_cols=104 Identities=19% Similarity=0.251 Sum_probs=54.2
Q ss_pred CCCeeeEEecccchhHHHhhhcCCC-eEEEEeccCCCCCchhHHhh------ccc----hh-hhcccCCCCCCC-CCccc
Q 007645 439 TPAIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKSSTLSVIYD------RGL----IG-VYHDWCEPFSTY-PRTYD 505 (595)
Q Consensus 439 ~~~~RnvmDm~~~~g~faa~l~~~~-vwvmnv~p~~~~~~l~~i~e------RGl----ig-~~~~wce~f~ty-prtyD 505 (595)
...-++||++|+|.|+.+..+.+.| +..+=+|=.|. .-+.++-+ .|+ +- +..|=-+-.... .+.||
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~-~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDK-MVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCH-HHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence 3457899999999999999998764 43222222221 11111111 010 00 011100001223 36899
Q ss_pred hhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 506 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 506 l~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
+|-.+. +.... ....-.-..++-.+-|.|+|||.++..
T Consensus 168 vIi~D~-~dp~~----~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 168 AIIVDS-SDPVG----PAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEEcC-CCCCC----chhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 997543 22211 111111235677889999999999875
No 383
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=88.06 E-value=0.62 Score=51.77 Aligned_cols=101 Identities=18% Similarity=0.200 Sum_probs=52.3
Q ss_pred eeEEecccchhHHHhhhcC---CCeEEEEeccCCCC-CchhHHh----hccch---hhhcccCCCCCCCCCccchhhcc-
Q 007645 443 RNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STLSVIY----DRGLI---GVYHDWCEPFSTYPRTYDLIHVS- 510 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~---~~vwvmnv~p~~~~-~~l~~i~----eRGli---g~~~~wce~f~typrtyDl~H~~- 510 (595)
..|+|++||.|+++.+|.. ..- .|+-.|.. .-+..+- ..|+- -+.+|..+.. -+.+||.|=.+
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~---~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~--~~~~fD~Vl~D~ 326 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRG---QITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS--PEEQPDAILLDA 326 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc--cCCCCCEEEEcC
Confidence 5799999999998766543 111 23334433 3443322 23431 1122322211 12579988643
Q ss_pred ---CccccccCCCCCCCC--CCh-------hhhHHhhcccccCCcEEEEe
Q 007645 511 ---GIESLIKNPGSNKNS--CSL-------VDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 511 ---~~~s~~~~~~~~~~~--c~~-------~~~llEmdRiLRP~G~~i~r 548 (595)
+.-...+.|...-.. -.+ ..+|-++=|+|||||.+++.
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvys 376 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYA 376 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 221111111110011 111 25899999999999999997
No 384
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=87.94 E-value=1.1 Score=45.00 Aligned_cols=125 Identities=17% Similarity=0.233 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHhhh----ccCCCCeeeEEecccchhHHHhhhcCCCe-EEEEeccCCCCC--c-------hhHHhhcc
Q 007645 420 RRWRRRVAYYKNTLNV----KLGTPAIRNIMDMNAFFGGFAAALTSDPV-WVMNVVPARKSS--T-------LSVIYDRG 485 (595)
Q Consensus 420 ~~w~~~v~~y~~~l~~----~~~~~~~RnvmDm~~~~g~faa~l~~~~v-wvmnv~p~~~~~--~-------l~~i~eRG 485 (595)
..+.+.++.|++.|=. .++...==-||.+|||.|.---.+-..|. =|-.+=|...-. + -..=++|=
T Consensus 51 ~~yne~~~~ykrelFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~f 130 (252)
T KOG4300|consen 51 SIYNEIADSYKRELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERF 130 (252)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEE
Confidence 4556777777754321 12222223589999999976666655453 333444432100 0 11112222
Q ss_pred chhhhcccCCCCCCCC-CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh----HHHHHH
Q 007645 486 LIGVYHDWCEPFSTYP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP----EVIDKV 557 (595)
Q Consensus 486 lig~~~~wce~f~typ-rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~----~~~~~~ 557 (595)
..|-- |.++--+ -+||.|=+.-+. |+--+....|-|+-|||||||-+|+=+++ ..|+++
T Consensus 131 vva~g----e~l~~l~d~s~DtVV~TlvL---------CSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i 194 (252)
T KOG4300|consen 131 VVADG----ENLPQLADGSYDTVVCTLVL---------CSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRI 194 (252)
T ss_pred Eeech----hcCcccccCCeeeEEEEEEE---------eccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHH
Confidence 22222 3344334 689988765443 23344557999999999999999996554 455554
No 385
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=87.85 E-value=3.9 Score=42.35 Aligned_cols=92 Identities=17% Similarity=0.250 Sum_probs=60.0
Q ss_pred ceEEEECCC-CcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEccccc---C-CCCCCceeEEEEcCCCc
Q 007645 202 RTALDMGCG-VASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRR---L-PFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 202 r~VLDIGCG-tG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~---L-Pfpd~sFDlV~~s~vL~ 275 (595)
.+||..|+| .|..+..+++. |. .+...+.++...+.+++.+....+...+... + ....+.+|+|+....
T Consensus 167 ~~vli~g~g~vG~~~~~la~~~G~---~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g-- 241 (338)
T cd08254 167 ETVLVIGLGGLGLNAVQIAKAMGA---AVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVG-- 241 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCC---EEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCC--
Confidence 478888876 47777777775 43 4566688888888888777643222111000 0 123467999885421
Q ss_pred ccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 276 PFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 276 h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
....+.++.+.|+++|.++..+.
T Consensus 242 -----~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 242 -----TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred -----CHHHHHHHHHHhhcCCEEEEECC
Confidence 13468889999999999998753
No 386
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=87.72 E-value=0.31 Score=46.83 Aligned_cols=42 Identities=26% Similarity=0.415 Sum_probs=34.9
Q ss_pred CCceeEEEEcCCCcccc----c---CH---HHHHHHHHhhcCCCcEEEEEcC
Q 007645 262 AFSFDIVHCSRCLIPFT----A---YN---ATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 262 d~sFDlV~~s~vL~h~~----~---d~---~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.++||.+.|..+++|.- . |+ ...+.++.++|||||.|+++.|
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 47899999999998864 1 11 3789999999999999999998
No 387
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=87.66 E-value=1.7 Score=45.84 Aligned_cols=118 Identities=15% Similarity=0.203 Sum_probs=62.5
Q ss_pred CeeeEEecccchhHHHhhhcCCCeEEEEeccCCC-CCchhHHhhc----cchhhhcccCCCCCCCC--CccchhhccCcc
Q 007645 441 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARK-SSTLSVIYDR----GLIGVYHDWCEPFSTYP--RTYDLIHVSGIE 513 (595)
Q Consensus 441 ~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~-~~~l~~i~eR----Glig~~~~wce~f~typ--rtyDl~H~~~~~ 513 (595)
+=+||+|.|||.|=+|-|..+.-. --|+-.|- +-.+.++.|- |+--+.|.-+-.-.+-| +.||+|=|+=+=
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA 239 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA 239 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH
Confidence 359999999999987766544221 01222222 2334443331 11101111111123344 589998844321
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh-HHHHHHHHhHhccCceeEEec
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-EVIDKVSRIANTVRWTAAVHD 572 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~-~~~~~~~~~~~~~~W~~~~~~ 572 (595)
.. +..+.=++-|.|+|||++|++.=. +-.+.|.+-..+--|++..+.
T Consensus 240 ~v------------l~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 240 EV------------LVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred HH------------HHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEE
Confidence 11 113444678999999999998422 114555665555577766553
No 388
>PRK01581 speE spermidine synthase; Validated
Probab=87.51 E-value=1.7 Score=47.18 Aligned_cols=107 Identities=15% Similarity=0.162 Sum_probs=57.8
Q ss_pred CCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc-cch----h---------hhcccCCCCCCCCC
Q 007645 438 GTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR-GLI----G---------VYHDWCEPFSTYPR 502 (595)
Q Consensus 438 ~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR-Gli----g---------~~~~wce~f~typr 502 (595)
...+-++||++|+|.|+.+..+++.+- +.+|+-++-. .-+.++-+. .|. | ++.|-.+-...-++
T Consensus 147 ~h~~PkrVLIIGgGdG~tlrelLk~~~-v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~ 225 (374)
T PRK01581 147 KVIDPKRVLILGGGDGLALREVLKYET-VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSS 225 (374)
T ss_pred hCCCCCEEEEECCCHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCC
Confidence 345568999999999998888877541 1233333322 333333321 110 0 11111111112246
Q ss_pred ccchhhccCccccccCCCCC-CCCCChhhhHHhhcccccCCcEEEEeCC
Q 007645 503 TYDLIHVSGIESLIKNPGSN-KNSCSLVDLMVEMDRMLRPEGTVVVRDS 550 (595)
Q Consensus 503 tyDl~H~~~~~s~~~~~~~~-~~~c~~~~~llEmdRiLRP~G~~i~rd~ 550 (595)
.||+|=++- . +|... ..+-.-...+-.+-|+|+|||.++....
T Consensus 226 ~YDVIIvDl-~----DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 226 LYDVIIIDF-P----DPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred CccEEEEcC-C----CccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 799987662 1 11111 1122224577889999999999988743
No 389
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=87.30 E-value=6.1 Score=40.74 Aligned_cols=100 Identities=20% Similarity=0.262 Sum_probs=64.6
Q ss_pred cceEEEECCCCcHHHHHHhhc----CCceEEEEeecCcHHHHHHHHHc------CCCeEEEEcc----cccCCCCCCcee
Q 007645 201 LRTALDMGCGVASFGGSMLSE----NILTLSFAPRDSHKAQIQFALER------GIPAFVAMLG----TRRLPFPAFSFD 266 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~----gv~~~~v~~vD~s~~~l~~A~er------g~~~~~~~~d----~~~LPfpd~sFD 266 (595)
..+.+|+|.|+..=++.|++. +. ...+.|+|+++..+....+. ++++.-.+++ ...+| ..+.-=
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~-~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~-~~~~Rl 156 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGS-LLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP-RGGRRL 156 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCC-cceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc-CCCeEE
Confidence 348999999999777766554 44 35889999999887654322 3333333333 22233 112223
Q ss_pred EEEEcCCCccccc-CHHHHHHHHHhhcCCCcEEEEEc
Q 007645 267 IVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 267 lV~~s~vL~h~~~-d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+++....+..+.+ +...+|..+...|+||-+|++-+
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 3444555666653 33588999999999999999965
No 390
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=87.07 E-value=0.45 Score=45.25 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=34.0
Q ss_pred CCCCCCCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC
Q 007645 495 EPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 550 (595)
Q Consensus 495 e~f~typrtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~ 550 (595)
+.++.-+.+||+|=+..++..+ -+....|-||-|+|+|||.+++-|-
T Consensus 36 ~~lp~~~~~fD~v~~~~~l~~~---------~d~~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 36 IDLPFDDCEFDAVTMGYGLRNV---------VDRLRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred hhCCCCCCCeeEEEecchhhcC---------CCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 4444223799999776555443 2456789999999999999998753
No 391
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=87.03 E-value=2.7 Score=44.65 Aligned_cols=57 Identities=19% Similarity=0.194 Sum_probs=45.3
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER 244 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er 244 (595)
..++.+.+.+....+. .++|.=+|.|..+..++++-.. ..+.++|.++.+++.|+++
T Consensus 7 Vll~Evl~~L~~~~gg--iyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~ 63 (305)
T TIGR00006 7 VLLDEVVEGLNIKPDG--IYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKER 63 (305)
T ss_pred hhHHHHHHhcCcCCCC--EEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHH
Confidence 3456666666655544 8999999999999999987323 5789999999999999876
No 392
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=86.99 E-value=5.7 Score=44.86 Aligned_cols=118 Identities=16% Similarity=0.156 Sum_probs=77.7
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhc---CCceEEEEeecCcHHHHHHHHHc----CCC--eEEEEcc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE---NILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLG 254 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~---gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~~d 254 (595)
...++.|.+++...... +|+|--||+|++.....+. ......+.|.+++......|+-+ +++ +.....+
T Consensus 172 ~~v~~liv~~l~~~~~~--~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~d 249 (489)
T COG0286 172 REVSELIVELLDPEPRN--SIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGD 249 (489)
T ss_pred HHHHHHHHHHcCCCCCC--eecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccc
Confidence 34456666666653333 8999999999877665443 11125789999999998888765 444 3444444
Q ss_pred cccCCC-----CCCceeEEEEcCCCc--cccc----------------------CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 255 TRRLPF-----PAFSFDIVHCSRCLI--PFTA----------------------YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 255 ~~~LPf-----pd~sFDlV~~s~vL~--h~~~----------------------d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+..-|. ..+.||.|+++.-+. .|.. ..-.+++.+.+.|+|||+..++.|
T Consensus 250 tl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 250 TLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred cccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 433332 336799999966553 1211 113678999999999998887776
No 393
>PHA01634 hypothetical protein
Probab=86.97 E-value=5.2 Score=37.31 Aligned_cols=42 Identities=14% Similarity=-0.057 Sum_probs=35.7
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER 244 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er 244 (595)
.++|+|||++.|..+.+++-+|.. .+.+++.++...+..++.
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~GAK--~Vva~E~~~kl~k~~een 70 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRGAS--FVVQYEKEEKLRKKWEEV 70 (156)
T ss_pred CCEEEEecCCccchhhHHhhcCcc--EEEEeccCHHHHHHHHHH
Confidence 459999999999999999988754 677788899998888774
No 394
>PRK11524 putative methyltransferase; Provisional
Probab=86.86 E-value=1.5 Score=45.66 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=35.3
Q ss_pred EEEEcccccC--CCCCCceeEEEEcCCCc----------ccc-----cCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 249 FVAMLGTRRL--PFPAFSFDIVHCSRCLI----------PFT-----AYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 249 ~~~~~d~~~L--Pfpd~sFDlV~~s~vL~----------h~~-----~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.+..+|+... .+++++||+|++.--.. .+. +-....+.++.|+|||||.+++..
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 3455554432 35678899999854321 010 011368899999999999999874
No 395
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=86.52 E-value=2.4 Score=46.28 Aligned_cols=129 Identities=16% Similarity=0.181 Sum_probs=77.8
Q ss_pred eecCCCCCcccccHHHHHHHHHhhc-------cccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHH
Q 007645 170 FTFPGGGTMFADGADKYIDKLKQYI-------PITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFAL 242 (595)
Q Consensus 170 ~~fp~~g~~F~~~a~~yi~~L~~~l-------~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~ 242 (595)
..++..+..|.+....+-++|.-.+ .......-++||.=+|+|.=+...+..-.....++..|+++++++..+
T Consensus 12 ~~~~~~~~vFYNP~~~~nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~ 91 (377)
T PF02005_consen 12 ITIPKKAPVFYNPVMEFNRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIK 91 (377)
T ss_dssp SSTTTTSSSS--GGGHHHHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHH
T ss_pred eecCCCCCcccCcchhcccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHH
Confidence 3355666677766666644432222 222112348999999999777666655222357888999999999887
Q ss_pred Hc----CCC---eEEEEcccccCC-CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 243 ER----GIP---AFVAMLGTRRLP-FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 243 er----g~~---~~~~~~d~~~LP-fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++ ++. +.+...|+..+= ...+.||+|-.- ++. .+..+|..+.+.+|.||++.++..
T Consensus 92 ~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD----PfG-Sp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 92 RNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD----PFG-SPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp HHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE------SS---HHHHHHHHHHEEEEEEEEEEE-
T ss_pred HhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC----CCC-CccHhHHHHHHHhhcCCEEEEecc
Confidence 66 443 355566654432 245789999743 333 567899999999999999999865
No 396
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=85.50 E-value=0.51 Score=50.39 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=16.6
Q ss_pred eeEEecccchhHHHhhhcC
Q 007645 443 RNIMDMNAFFGGFAAALTS 461 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~ 461 (595)
..|+|+|||.|.+++.|.+
T Consensus 82 ~~VLDIG~GtG~~a~~LA~ 100 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSR 100 (322)
T ss_pred CEEEEEeCCccHHHHHHHH
Confidence 4799999999999988854
No 397
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=84.99 E-value=4.4 Score=42.81 Aligned_cols=93 Identities=14% Similarity=0.129 Sum_probs=58.6
Q ss_pred ceEEEECCC-CcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEc--ccccCCCCCCceeEEEEcCCCccc
Q 007645 202 RTALDMGCG-VASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAML--GTRRLPFPAFSFDIVHCSRCLIPF 277 (595)
Q Consensus 202 r~VLDIGCG-tG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~--d~~~LPfpd~sFDlV~~s~vL~h~ 277 (595)
.+||=+||| .|.++..+++. |. ..+...|.++..++.+++.|....+... +...+....+.||+|+-.-.
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~--~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G---- 244 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGA--AEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG---- 244 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--cEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC----
Confidence 488888876 34555566654 33 1456678889999999988764332111 11111111235898875421
Q ss_pred ccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 278 TAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 278 ~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
....+..+.+.||+||.+++.+.
T Consensus 245 ---~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 ---HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ---CHHHHHHHHHHhhcCCEEEEEcc
Confidence 13467788999999999999874
No 398
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=84.78 E-value=3.1 Score=41.60 Aligned_cols=141 Identities=19% Similarity=0.248 Sum_probs=83.7
Q ss_pred hhhccCCCCeeeEEecccchhHHHhhhc-CCCeEEEEeccCCCC-Cchh----HHhhccchh----hhcccCCC------
Q 007645 433 LNVKLGTPAIRNIMDMNAFFGGFAAALT-SDPVWVMNVVPARKS-STLS----VIYDRGLIG----VYHDWCEP------ 496 (595)
Q Consensus 433 l~~~~~~~~~RnvmDm~~~~g~faa~l~-~~~vwvmnv~p~~~~-~~l~----~i~eRGlig----~~~~wce~------ 496 (595)
|.+.+....- .||.+++|+|--|+++. ..|- +---|+|-. +.+. -|-+-|+.- +.-|-+.+
T Consensus 18 L~~~l~~~~~-~vLEiaSGtGqHa~~FA~~lP~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~ 94 (204)
T PF06080_consen 18 LKQYLPDSGT-RVLEIASGTGQHAVYFAQALPH--LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWEL 94 (204)
T ss_pred HHHHhCccCc-eEEEEcCCccHHHHHHHHHCCC--CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcccc
Confidence 4444443322 79999999998766662 2232 224577655 3323 244666522 22222222
Q ss_pred -CCCCCCccchhhccCcc--ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe------------------------C
Q 007645 497 -FSTYPRTYDLIHVSGIE--SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR------------------------D 549 (595)
Q Consensus 497 -f~typrtyDl~H~~~~~--s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r------------------------d 549 (595)
-.-++.+||.|=+..++ +.| -..+-++-+.-|+|+|||.+++- |
T Consensus 95 ~~~~~~~~~D~i~~~N~lHI~p~---------~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rd 165 (204)
T PF06080_consen 95 PAPLSPESFDAIFCINMLHISPW---------SAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRD 165 (204)
T ss_pred ccccCCCCcceeeehhHHHhcCH---------HHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCC
Confidence 22256899988776665 333 33467999999999999999972 1
Q ss_pred Ch---HHHHHHHHhHhccCceeEEeccCCCCCCCceEEEEEe
Q 007645 550 SP---EVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATK 588 (595)
Q Consensus 550 ~~---~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~l~~~K 588 (595)
.. .-++.|.++|.+-..+.... + +-|. .+++||++|
T Consensus 166 p~~GiRD~e~v~~lA~~~GL~l~~~-~-~MPA-NN~~Lvfrk 204 (204)
T PF06080_consen 166 PEWGIRDIEDVEALAAAHGLELEED-I-DMPA-NNLLLVFRK 204 (204)
T ss_pred CCcCccCHHHHHHHHHHCCCccCcc-c-ccCC-CCeEEEEeC
Confidence 10 22567888888766654322 1 1232 478999987
No 399
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=84.78 E-value=0.81 Score=50.75 Aligned_cols=127 Identities=15% Similarity=0.162 Sum_probs=64.4
Q ss_pred hhhhhhhhHHHHHHHHHHH-hhhccCCCCeeeEEecccchhHHHhhhcCC---CeEEEEeccCCCC-CchhHHhhc----
Q 007645 414 VFEADSRRWRRRVAYYKNT-LNVKLGTPAIRNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR---- 484 (595)
Q Consensus 414 ~f~~d~~~w~~~v~~y~~~-l~~~~~~~~~RnvmDm~~~~g~faa~l~~~---~vwvmnv~p~~~~-~~l~~i~eR---- 484 (595)
.|++.--.+++..+..... +. +..+ .+|+||+||.||.+.++... .- .|+-.|-. +-|..+-++
T Consensus 213 ~~~~G~~~~Qd~~s~~~~~~l~--~~~g--~~VLD~cagpGgkt~~la~~~~~~g---~V~a~Dis~~rl~~~~~n~~r~ 285 (431)
T PRK14903 213 VIKDGLATVQGESSQIVPLLME--LEPG--LRVLDTCAAPGGKTTAIAELMKDQG---KILAVDISREKIQLVEKHAKRL 285 (431)
T ss_pred HHHCCeEEEECHHHHHHHHHhC--CCCC--CEEEEeCCCccHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHHc
Confidence 3444444444444444332 22 3344 47999999999988766431 21 34444544 555544332
Q ss_pred cch---hhhcccCCCCCCC-CCccchhhccCccccc----cCCCCC--CCCCC-------hhhhHHhhcccccCCcEEEE
Q 007645 485 GLI---GVYHDWCEPFSTY-PRTYDLIHVSGIESLI----KNPGSN--KNSCS-------LVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 485 Gli---g~~~~wce~f~ty-prtyDl~H~~~~~s~~----~~~~~~--~~~c~-------~~~~llEmdRiLRP~G~~i~ 547 (595)
|+- -+.+|..+ ++.+ +.+||.|=++---|.. ++|... ...-. -..||-+.=+.|+|||.+++
T Consensus 286 g~~~v~~~~~Da~~-l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvY 364 (431)
T PRK14903 286 KLSSIEIKIADAER-LTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLY 364 (431)
T ss_pred CCCeEEEEECchhh-hhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 431 11223322 2212 3679988654322211 000000 00001 12568888999999999999
Q ss_pred e
Q 007645 548 R 548 (595)
Q Consensus 548 r 548 (595)
+
T Consensus 365 s 365 (431)
T PRK14903 365 S 365 (431)
T ss_pred E
Confidence 7
No 400
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=84.64 E-value=15 Score=37.19 Aligned_cols=128 Identities=13% Similarity=0.054 Sum_probs=82.1
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--eEEEEcccccCCC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPF 260 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~~d~~~LPf 260 (595)
+..+++.+.... ++.||||--|.+..+|.+.+.. ..++..|+++.-++.|.++ +.. .....+|. -.++
T Consensus 7 L~~va~~V~~~~----~iaDIGsDHAYLp~~Lv~~~~~-~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg-l~~l 80 (226)
T COG2384 7 LTTVANLVKQGA----RIADIGSDHAYLPIYLVKNNPA-STAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG-LAVL 80 (226)
T ss_pred HHHHHHHHHcCC----ceeeccCchhHhHHHHHhcCCc-ceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC-cccc
Confidence 445555554332 5999999999999999998653 4556679999888888654 332 22333333 1133
Q ss_pred C-CCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 261 P-AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 261 p-d~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
. +..+|.|+...+--. -...+|.+-...|+-=-+|++.-. ..-..+++.+....|++..+
T Consensus 81 ~~~d~~d~ivIAGMGG~---lI~~ILee~~~~l~~~~rlILQPn--------~~~~~LR~~L~~~~~~I~~E 141 (226)
T COG2384 81 ELEDEIDVIVIAGMGGT---LIREILEEGKEKLKGVERLILQPN--------IHTYELREWLSANSYEIKAE 141 (226)
T ss_pred CccCCcCEEEEeCCcHH---HHHHHHHHhhhhhcCcceEEECCC--------CCHHHHHHHHHhCCceeeee
Confidence 3 347999988765422 234667777777764446666421 11235888899999998866
No 401
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=84.41 E-value=15 Score=36.95 Aligned_cols=140 Identities=14% Similarity=0.125 Sum_probs=77.8
Q ss_pred HHHHHHHHhh---ccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHH----HHHHHHHcCCCeEEEEcccc
Q 007645 184 DKYIDKLKQY---IPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKA----QIQFALERGIPAFVAMLGTR 256 (595)
Q Consensus 184 ~~yi~~L~~~---l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~----~l~~A~erg~~~~~~~~d~~ 256 (595)
..+...|..- ++...++ +||=+|+.+|+....+.+--. ...+.+++.|+. .+..|.+|. ++.-...|+
T Consensus 59 SKLaAaIl~Gl~~~pi~~g~--~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R~-Ni~PIL~DA- 133 (231)
T COG1889 59 SKLAAAILKGLKNFPIKEGS--KVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKRP-NIIPILEDA- 133 (231)
T ss_pred hHHHHHHHcCcccCCcCCCC--EEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhCC-Cceeeeccc-
Confidence 3444444433 3455555 999999999988888876511 123445565553 455666653 222233333
Q ss_pred cCCC----CCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCC---chhHHHHHHHHHHcCcEEE
Q 007645 257 RLPF----PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQ---DKEWADLQAVARALCYELI 329 (595)
Q Consensus 257 ~LPf----pd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~---~~~w~~l~~la~~~~w~~v 329 (595)
+.|. -=+..|+|++-- .-++....+...+..-||+||+++++.....-... ...+++-.+.++..+|++.
T Consensus 134 ~~P~~Y~~~Ve~VDviy~DV---AQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~ 210 (231)
T COG1889 134 RKPEKYRHLVEKVDVIYQDV---AQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEIL 210 (231)
T ss_pred CCcHHhhhhcccccEEEEec---CCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceee
Confidence 2331 124589988642 12233457788899999999988887642111111 1224443344555566665
Q ss_pred Ee
Q 007645 330 AV 331 (595)
Q Consensus 330 ~~ 331 (595)
..
T Consensus 211 e~ 212 (231)
T COG1889 211 EV 212 (231)
T ss_pred EE
Confidence 44
No 402
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=84.41 E-value=48 Score=34.13 Aligned_cols=163 Identities=15% Similarity=0.125 Sum_probs=76.6
Q ss_pred cceEEEECCCCc-HHHHHHhhcCCceEEEEeecCcHHHHHH----HHHcCCCeEEEEccccc-CCCC-CCceeEEEEcCC
Q 007645 201 LRTALDMGCGVA-SFGGSMLSENILTLSFAPRDSHKAQIQF----ALERGIPAFVAMLGTRR-LPFP-AFSFDIVHCSRC 273 (595)
Q Consensus 201 ~r~VLDIGCGtG-~~a~~La~~gv~~~~v~~vD~s~~~l~~----A~erg~~~~~~~~d~~~-LPfp-d~sFDlV~~s~v 273 (595)
+++||=+|=..- +++..|... ..+++-+|+++..+++ |.+.|+++.....|... ||-. .++||++++--
T Consensus 45 gk~il~lGDDDLtSlA~al~~~---~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDP- 120 (243)
T PF01861_consen 45 GKRILFLGDDDLTSLALALTGL---PKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDP- 120 (243)
T ss_dssp T-EEEEES-TT-HHHHHHHHT-----SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---
T ss_pred CCEEEEEcCCcHHHHHHHhhCC---CCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCC-
Confidence 458999997765 444444333 2366678999998875 45668888877777643 3321 47999999874
Q ss_pred Ccccc-cCHHHHHHHHHhhcCCCc-EEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEeecceeEeeccCCcccccccC
Q 007645 274 LIPFT-AYNATYLIEVDRLLRPGG-YLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGESCLSNQN 351 (595)
Q Consensus 274 L~h~~-~d~~~~L~Ei~RvLRPGG-~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~~~~~~iw~K~~~~~c~~~~~ 351 (595)
+++ +-...++......||..| ..+++-.. ....-..|..+++.+.++++-+..--.+...|.--....... .
T Consensus 121 --PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~--~~~s~~~~~~~Q~~l~~~gl~i~dii~~Fn~Y~ga~~i~~~~--~ 194 (243)
T PF01861_consen 121 --PYTPEGLKLFLSRGIEALKGEGCAGYFGFTH--KEASPDKWLEVQRFLLEMGLVITDIIPDFNRYEGAEIIGNTR--F 194 (243)
T ss_dssp ---SSHHHHHHHHHHHHHTB-STT-EEEEEE-T--TT--HHHHHHHHHHHHTS--EEEEEEEEEEEB---S-GGGSH--H
T ss_pred --CCCHHHHHHHHHHHHHHhCCCCceEEEEEec--CcCcHHHHHHHHHHHHHCCcCHHHHHhhhcccccchhhcccc--e
Confidence 333 234578889999998755 43333221 111123488999999999987776655554443211111100 0
Q ss_pred CCCCCCCCCCCCCCCcccccccccc
Q 007645 352 EFGLELCDESDDPNYAWYFKLKKCV 376 (595)
Q Consensus 352 ~~~~p~C~~~~~~~~~wy~~l~~c~ 376 (595)
....|. ...|+.-||.....-|
T Consensus 195 ~~~l~v---~~~~~~~~y~s~~~ri 216 (243)
T PF01861_consen 195 WQVLPV---KKRPEKIWYRSTMPRI 216 (243)
T ss_dssp HHHSSS-------SS---EEEEEEE
T ss_pred eEEecc---ccccccccccceeEEE
Confidence 000111 1267788997655554
No 403
>KOG2730 consensus Methylase [General function prediction only]
Probab=84.41 E-value=2.5 Score=42.75 Aligned_cols=89 Identities=20% Similarity=0.262 Sum_probs=59.6
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--eEEEEcccc----cCCCCCCceeEEEEcC
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTR----RLPFPAFSFDIVHCSR 272 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~~d~~----~LPfpd~sFDlV~~s~ 272 (595)
.|+|.-||.|..+...+.++. .+.++|+++.-+..|+.+ |++ +.|.++|.. .+.+...-+|+|+.+.
T Consensus 97 ~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 97 VIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred hhhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence 799999999999988888765 445669999999999877 554 678888743 3345544566776554
Q ss_pred CCcccc--cCHHHHHHHHHhhcCCCcE
Q 007645 273 CLIPFT--AYNATYLIEVDRLLRPGGY 297 (595)
Q Consensus 273 vL~h~~--~d~~~~L~Ei~RvLRPGG~ 297 (595)
+|. .....-+..+...+.|.|.
T Consensus 174 ---pwggp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 174 ---PWGGPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred ---CCCCcchhhhhhhhhhhhcchhHH
Confidence 443 2223445555555565543
No 404
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=84.30 E-value=0.55 Score=42.31 Aligned_cols=39 Identities=26% Similarity=0.617 Sum_probs=27.5
Q ss_pred ceeEEEEcCCC--cccc-cCH--HHHHHHHHhhcCCCcEEEEEc
Q 007645 264 SFDIVHCSRCL--IPFT-AYN--ATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 264 sFDlV~~s~vL--~h~~-~d~--~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.||+|.|..+. +|+. .|. ..++..+.+.|+|||.|++.-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 48999997664 2332 122 378999999999999999953
No 405
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=84.30 E-value=7.9 Score=39.91 Aligned_cols=100 Identities=19% Similarity=0.192 Sum_probs=55.5
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHH--HHHHH--------HcCCCeEEEEcc--c-ccCCCCCCc-ee
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQ--IQFAL--------ERGIPAFVAMLG--T-RRLPFPAFS-FD 266 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~--l~~A~--------erg~~~~~~~~d--~-~~LPfpd~s-FD 266 (595)
..+||++|+|+|-.+...+...- ..+.--|..... ++..+ +.|..+....++ . ....+-... ||
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~--~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLG--AEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhc--ceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 45799999999966655554311 123223433222 22221 112233333222 1 111111223 99
Q ss_pred EEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 267 IVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 267 lV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+|+++.|+.+- ...+.++.-+...|-.+|.+++..+
T Consensus 165 lilasDvvy~~-~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 165 LILASDVVYEE-ESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred EEEEeeeeecC-CcchhHHHHHHHHHhcCCeEEEEEe
Confidence 99999998554 3667788888888888887777653
No 406
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=84.25 E-value=8.1 Score=40.48 Aligned_cols=162 Identities=18% Similarity=0.199 Sum_probs=89.1
Q ss_pred hhhhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcC-CCeEEEEeccCCCC-CchhHHhh-------ccchh
Q 007645 418 DSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTS-DPVWVMNVVPARKS-STLSVIYD-------RGLIG 488 (595)
Q Consensus 418 d~~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~-~~vwvmnv~p~~~~-~~l~~i~e-------RGlig 488 (595)
+|+.|-+.|-.=.+... ...+. -++|.|||.|.-+-+|.. .| ---|..+|-. .-+.++-| -|-|+
T Consensus 129 ETEE~V~~Vid~~~~~~--~~~~~--~ildlgtGSGaIslsll~~L~--~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~ 202 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSE--HSKHT--HILDLGTGSGAISLSLLHGLP--QCTVTAIDVSKAAIKLAKENAQRLKLSGRIE 202 (328)
T ss_pred cHHHHHHHHHHHHhhhh--hcccc--eEEEecCCccHHHHHHHhcCC--CceEEEEeccHHHHHHHHHHHHHHhhcCceE
Confidence 35788888765333111 22222 799999999999888754 23 1111222222 33333332 35677
Q ss_pred hhcc--cCCCCCCCC---CccchhhccCcccc-------------ccCCCC--CCCCCC--hhhhHHhhcccccCCcEEE
Q 007645 489 VYHD--WCEPFSTYP---RTYDLIHVSGIESL-------------IKNPGS--NKNSCS--LVDLMVEMDRMLRPEGTVV 546 (595)
Q Consensus 489 ~~~~--wce~f~typ---rtyDl~H~~~~~s~-------------~~~~~~--~~~~c~--~~~~llEmdRiLRP~G~~i 546 (595)
+.|. --+.|-+|| .+||+|=++--... |.++.+ .+..|. +..+..=.=|.|+|||++.
T Consensus 203 v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~ 282 (328)
T KOG2904|consen 203 VIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQ 282 (328)
T ss_pred EEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEE
Confidence 8876 566778887 89999877644332 111111 111122 1245566789999999999
Q ss_pred Ee-----CChHHHHHHHHh-HhccCceeEEeccCCCCCCCceEEEEEe
Q 007645 547 VR-----DSPEVIDKVSRI-ANTVRWTAAVHDKEPGSNGREKILVATK 588 (595)
Q Consensus 547 ~r-----d~~~~~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~l~~~K 588 (595)
+. ++...+..+... -+.--|.+.+. .+-.+.+++++..+
T Consensus 283 le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~---~Df~~~~Rfv~i~r 327 (328)
T KOG2904|consen 283 LELVERKEHSYLVRIWMISLKDDSNGKAAVV---SDFAGRPRFVIIHR 327 (328)
T ss_pred EEecccccCcHHHHHHHHhchhhccchhhee---ecccCCcceEEEEe
Confidence 85 344444444433 33334555444 23344667766554
No 407
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=84.18 E-value=16 Score=35.14 Aligned_cols=118 Identities=18% Similarity=0.226 Sum_probs=71.1
Q ss_pred ECCCCcHHHHHHhhc-C-CceEEEEeecCcHHHHH----------HHHHcCCCeEEEEcccccCC----CCCCceeEEEE
Q 007645 207 MGCGVASFGGSMLSE-N-ILTLSFAPRDSHKAQIQ----------FALERGIPAFVAMLGTRRLP----FPAFSFDIVHC 270 (595)
Q Consensus 207 IGCGtG~~a~~La~~-g-v~~~~v~~vD~s~~~l~----------~A~erg~~~~~~~~d~~~LP----fpd~sFDlV~~ 270 (595)
||=|.=+|+..|++. + ...+..+..|..++..+ ..++.|..+.+. .|+..+. ...+.||.|+-
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~-VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHG-VDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccC-CCCCcccccccccCCcCCEEEE
Confidence 566666888888877 2 22233344455443333 223345555443 3555543 35688999997
Q ss_pred cCCCcccc-------cC-------HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 271 SRCLIPFT-------AY-------NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 271 s~vL~h~~-------~d-------~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
++- |.. .+ ...++..+.++|+++|.+.++-... ..+..|. ++++|++.++.+...
T Consensus 82 NFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~---~py~~W~-i~~lA~~~gl~l~~~ 150 (166)
T PF10354_consen 82 NFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG---QPYDSWN-IEELAAEAGLVLVRK 150 (166)
T ss_pred eCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC---CCCcccc-HHHHHHhcCCEEEEE
Confidence 753 433 01 1267888999999999999986411 1122343 678899888887755
No 408
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=84.15 E-value=2.4 Score=45.75 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=53.5
Q ss_pred cccCCeeecCCCCCcccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhc---C----CceEEEEeecCcHH
Q 007645 164 KESGPYFTFPGGGTMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE---N----ILTLSFAPRDSHKA 236 (595)
Q Consensus 164 ~~e~~~~~fp~~g~~F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~---g----v~~~~v~~vD~s~~ 236 (595)
..+++.++-|.-+..|..-...++-++.+.+.... ...+++||.|.|.++..++.. . ....++.-+++|+.
T Consensus 43 G~~GDFiTApels~lFGella~~~~~~wq~~g~p~--~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~ 120 (370)
T COG1565 43 GRKGDFITAPELSQLFGELLAEQFLQLWQELGRPA--PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPE 120 (370)
T ss_pred cccCCeeechhHHHHHHHHHHHHHHHHHHHhcCCC--CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHH
Confidence 34567777777776666555555444444443322 347999999999999988765 1 23678888999998
Q ss_pred HHHHHHHc
Q 007645 237 QIQFALER 244 (595)
Q Consensus 237 ~l~~A~er 244 (595)
..+.-+++
T Consensus 121 L~~~Qk~~ 128 (370)
T COG1565 121 LRARQKET 128 (370)
T ss_pred HHHHHHHH
Confidence 87665554
No 409
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=84.01 E-value=1.4 Score=49.13 Aligned_cols=141 Identities=21% Similarity=0.320 Sum_probs=67.7
Q ss_pred ccChhhhhhhhhhHHHHHHHHHHHhhhccCCCCe----eeEEecccchhHHHh------hhc--CCCeEEEEeccCCCC-
Q 007645 409 KNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAI----RNIMDMNAFFGGFAA------ALT--SDPVWVMNVVPARKS- 475 (595)
Q Consensus 409 ~~~~~~f~~d~~~w~~~v~~y~~~l~~~~~~~~~----RnvmDm~~~~g~faa------~l~--~~~vwvmnv~p~~~~- 475 (595)
..+.|.|++|.-++..-=+.-...|.......+. ..|||+|||.|-... +-. ...|..+ -....
T Consensus 150 s~tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAV---Ekn~~A 226 (448)
T PF05185_consen 150 SQTYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAV---EKNPNA 226 (448)
T ss_dssp HHHHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEE---ESSTHH
T ss_pred cccHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEE---cCCHhH
Confidence 3478999999887743222211112333344433 469999999998741 111 2233332 11111
Q ss_pred -Cchh-HHhhccc---hhhhcccCCCCCCCCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe--
Q 007645 476 -STLS-VIYDRGL---IGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-- 548 (595)
Q Consensus 476 -~~l~-~i~eRGl---ig~~~~wce~f~typrtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r-- 548 (595)
-+|+ .|-+.|+ |=++|.==+.+.. |--.|+|= |-|.+ +-...-.+...|.-.||.|+|+|.+|=+
T Consensus 227 ~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-pekvDIIV-----SElLG--sfg~nEl~pE~Lda~~rfLkp~Gi~IP~~~ 298 (448)
T PF05185_consen 227 VVTLQKRVNANGWGDKVTVIHGDMREVEL-PEKVDIIV-----SELLG--SFGDNELSPECLDAADRFLKPDGIMIPSSY 298 (448)
T ss_dssp HHHHHHHHHHTTTTTTEEEEES-TTTSCH-SS-EEEEE-----E---B--TTBTTTSHHHHHHHGGGGEEEEEEEESSEE
T ss_pred HHHHHHHHHhcCCCCeEEEEeCcccCCCC-CCceeEEE-----EeccC--CccccccCHHHHHHHHhhcCCCCEEeCcch
Confidence 2343 2244454 4444432233332 44555543 44431 1111224456788899999999988822
Q ss_pred -------CChHHHHHHHHh
Q 007645 549 -------DSPEVIDKVSRI 560 (595)
Q Consensus 549 -------d~~~~~~~~~~~ 560 (595)
......+++...
T Consensus 299 t~ylaPiss~~l~~~~~~~ 317 (448)
T PF05185_consen 299 TSYLAPISSPKLYQEVRNW 317 (448)
T ss_dssp EEEEEEEE-HHHHHHHHHH
T ss_pred hhEEEEeeCHHHHHHHHhh
Confidence 344666666544
No 410
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=82.95 E-value=1.7 Score=46.36 Aligned_cols=93 Identities=11% Similarity=0.139 Sum_probs=54.7
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccc-h------hhhccc-CCCCCCCCCccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-I------GVYHDW-CEPFSTYPRTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGl-i------g~~~~w-ce~f~typrtyDl~H~~~~~ 513 (595)
.+|||+|||.|.++..|.... -+|+-.|-. +-|.++-+|.- . +.--++ +..+...+.+||+|=|..++
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~vL 222 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDVL 222 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCEE
Confidence 479999999999999998753 256666654 66766666531 0 011111 11122335889999888887
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEE
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVV 546 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i 546 (595)
.++. . -.+..++-.+-++ .++|.+|
T Consensus 223 ~H~p------~-~~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 223 IHYP------Q-DKADGMIAHLASL-AEKRLII 247 (315)
T ss_pred EecC------H-HHHHHHHHHHHhh-cCCEEEE
Confidence 7663 1 1233455555554 4555544
No 411
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=82.85 E-value=1.1 Score=45.46 Aligned_cols=113 Identities=16% Similarity=0.184 Sum_probs=65.4
Q ss_pred cceEEEECCCCcHHHHHHhhcCCc-----eE---EEEeecCcHHHHHHHHHcCCCeEEEEcccccCC--------CCCCc
Q 007645 201 LRTALDMGCGVASFGGSMLSENIL-----TL---SFAPRDSHKAQIQFALERGIPAFVAMLGTRRLP--------FPAFS 264 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~-----~~---~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LP--------fpd~s 264 (595)
..+|+|+.+..|+|+..|.++-.. .. .++.+|+.+- |- -..+.-.++|+.... |....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M----aP--I~GV~qlq~DIT~~stae~Ii~hfggek 115 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM----AP--IEGVIQLQGDITSASTAEAIIEHFGGEK 115 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC----Cc--cCceEEeecccCCHhHHHHHHHHhCCCC
Confidence 458999999999999998876211 01 1566665321 11 112334455544322 44557
Q ss_pred eeEEEEcCC-----CcccccCH-----HHHHHHHHhhcCCCcEEEEEcCCCCCCCCchh--HHHHHHHHHH
Q 007645 265 FDIVHCSRC-----LIPFTAYN-----ATYLIEVDRLLRPGGYLVISGPPVQWPKQDKE--WADLQAVARA 323 (595)
Q Consensus 265 FDlV~~s~v-----L~h~~~d~-----~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~--w~~l~~la~~ 323 (595)
.|+|+|-.+ +|.+.+.. -.+|.-..++|||||.|+--. +..++.. +.+|+.++++
T Consensus 116 AdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi----fRg~~tslLysql~~ff~k 182 (294)
T KOG1099|consen 116 ADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI----FRGRDTSLLYSQLRKFFKK 182 (294)
T ss_pred ccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh----hccCchHHHHHHHHHHhhc
Confidence 899999543 32222111 145666788999999998643 3333322 5566666663
No 412
>PHA03411 putative methyltransferase; Provisional
Probab=81.88 E-value=1.5 Score=45.88 Aligned_cols=101 Identities=11% Similarity=0.112 Sum_probs=59.1
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhccchhhhcccCCCCCCCC--CccchhhccCccccccC
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYP--RTYDLIHVSGIESLIKN 518 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~wce~f~typ--rtyDl~H~~~~~s~~~~ 518 (595)
..|+|+|||.|.|+.++... +- .+|+-.|-. ..+..+-++ +.. ..=.+.-+..++ ++||+|=++--|-+...
T Consensus 66 grVLDLGcGsGilsl~la~r~~~--~~V~gVDisp~al~~Ar~n-~~~-v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKP--EKIVCVELNPEFARIGKRL-LPE-AEWITSDVFEFESNEKFDVVISNPPFGKINT 141 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHh-CcC-CEEEECchhhhcccCCCcEEEEcCCccccCc
Confidence 47999999999998877543 11 234444443 455544332 111 111122233333 68999999888875321
Q ss_pred CCCCCC-----------CC-ChhhhHHhhcccccCCcEEEEe
Q 007645 519 PGSNKN-----------SC-SLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 519 ~~~~~~-----------~c-~~~~~llEmdRiLRP~G~~i~r 548 (595)
..... .| .+...+-..-++|.|+|.+++-
T Consensus 142 -~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 142 -TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred -hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 10011 11 2567889999999999988763
No 413
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=81.53 E-value=3.5 Score=36.79 Aligned_cols=85 Identities=21% Similarity=0.261 Sum_probs=59.0
Q ss_pred CCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccc---cC-C-CCCCceeEEEEcCCCcccccCHHHH
Q 007645 210 GVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTR---RL-P-FPAFSFDIVHCSRCLIPFTAYNATY 284 (595)
Q Consensus 210 GtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~---~L-P-fpd~sFDlV~~s~vL~h~~~d~~~~ 284 (595)
|.|.++..+++... ..+..+|.++..++.+++.|....+...+.. .+ . ...+.+|+|+-.- .-+..
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~-------g~~~~ 71 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCV-------GSGDT 71 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESS-------SSHHH
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEec-------CcHHH
Confidence 45788888887732 5777889999999999998844333221110 01 1 3345799998432 12568
Q ss_pred HHHHHhhcCCCcEEEEEcC
Q 007645 285 LIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 285 L~Ei~RvLRPGG~lvls~p 303 (595)
+.+...+|++||.+++.+-
T Consensus 72 ~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 72 LQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp HHHHHHHEEEEEEEEEESS
T ss_pred HHHHHHHhccCCEEEEEEc
Confidence 9999999999999999885
No 414
>PRK03612 spermidine synthase; Provisional
Probab=81.46 E-value=2.1 Score=48.69 Aligned_cols=123 Identities=16% Similarity=0.160 Sum_probs=61.7
Q ss_pred CCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc-cch------------hhh-cccCCCCCCCCCcc
Q 007645 440 PAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR-GLI------------GVY-HDWCEPFSTYPRTY 504 (595)
Q Consensus 440 ~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR-Gli------------g~~-~~wce~f~typrty 504 (595)
.+-++|+|+|||.|+.+..+.+.+- +-.|+-.|-. .-+.++-+. .+- -++ .|=-+-....+++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4458899999999999988766541 0112222211 222222221 000 000 01000112346789
Q ss_pred chhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC-----ChHHHHHHHHhHhccCce
Q 007645 505 DLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-----SPEVIDKVSRIANTVRWT 567 (595)
Q Consensus 505 Dl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd-----~~~~~~~~~~~~~~~~W~ 567 (595)
|+|-.+- ..... + ...+=--++++-++-|+|+|||.+++.. ..+...++.+.+++....
T Consensus 375 DvIi~D~-~~~~~-~--~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 375 DVIIVDL-PDPSN-P--ALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLA 438 (521)
T ss_pred CEEEEeC-CCCCC-c--chhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCE
Confidence 9997662 11110 0 0001001245667789999999999953 244455555555555333
No 415
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=81.25 E-value=4.8 Score=45.49 Aligned_cols=99 Identities=15% Similarity=0.172 Sum_probs=69.0
Q ss_pred cceEEEECCCCcHHHHHHhhc---CCceEEEEeecCcHHHHHHHHHc-----CCCeEEEEcccccCCCCCCceeEEEEcC
Q 007645 201 LRTALDMGCGVASFGGSMLSE---NILTLSFAPRDSHKAQIQFALER-----GIPAFVAMLGTRRLPFPAFSFDIVHCSR 272 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~---gv~~~~v~~vD~s~~~l~~A~er-----g~~~~~~~~d~~~LPfpd~sFDlV~~s~ 272 (595)
...|+-+|+|-|-+....++. --..+.+..++-+++++-.-..+ .-.+.++..|+...+-|..+.|++++-
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE- 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSE- 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHH-
Confidence 446789999999766554433 12356788888888887665554 235778888898888656889999863
Q ss_pred CCcccccCH--HHHHHHHHhhcCCCcEEEE
Q 007645 273 CLIPFTAYN--ATYLIEVDRLLRPGGYLVI 300 (595)
Q Consensus 273 vL~h~~~d~--~~~L~Ei~RvLRPGG~lvl 300 (595)
.|..+.++. ..-|.-+-+.|||.|..+=
T Consensus 447 LLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 447 LLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred hhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 233443222 4789999999999976643
No 416
>PHA03412 putative methyltransferase; Provisional
Probab=80.82 E-value=2 Score=44.03 Aligned_cols=99 Identities=12% Similarity=0.046 Sum_probs=54.2
Q ss_pred eeEEecccchhHHHhhhcCC----CeEEEEeccCCCC-CchhHHhhccchhhhcccCCCCCCC--CCccchhhccCcccc
Q 007645 443 RNIMDMNAFFGGFAAALTSD----PVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTY--PRTYDLIHVSGIESL 515 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~----~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~wce~f~ty--prtyDl~H~~~~~s~ 515 (595)
..|+|+|||.|.|+.++... +. .+|.-.+-. +.+..+-+ .+.. .+=.+.-|-.+ +.+||+|=++=-|..
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~--~~V~aVEID~~Al~~Ar~-n~~~-~~~~~~D~~~~~~~~~FDlIIsNPPY~~ 126 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKP--REIVCVELNHTYYKLGKR-IVPE-ATWINADALTTEFDTLFDMAISNPPFGK 126 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCC--cEEEEEECCHHHHHHHHh-hccC-CEEEEcchhcccccCCccEEEECCCCCC
Confidence 37999999999999987542 21 244444332 33433332 2211 12222333333 358999998888875
Q ss_pred ccCCCCCCCC---CChhh-hHHhhcccccCCcEEE
Q 007645 516 IKNPGSNKNS---CSLVD-LMVEMDRMLRPEGTVV 546 (595)
Q Consensus 516 ~~~~~~~~~~---c~~~~-~llEmdRiLRP~G~~i 546 (595)
..... ...| ..+.. ++-..-|+||||++|+
T Consensus 127 ~~~~d-~~ar~~g~~~~~~li~~A~~Ll~~G~~IL 160 (241)
T PHA03412 127 IKTSD-FKGKYTGAEFEYKVIERASQIARQGTFII 160 (241)
T ss_pred ccccc-cCCcccccHHHHHHHHHHHHHcCCCEEEe
Confidence 43111 1222 23333 5555567999999843
No 417
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=80.30 E-value=14 Score=38.96 Aligned_cols=88 Identities=16% Similarity=0.067 Sum_probs=56.4
Q ss_pred cceEEEECCC-CcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccc
Q 007645 201 LRTALDMGCG-VASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT 278 (595)
Q Consensus 201 ~r~VLDIGCG-tG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~ 278 (595)
..+||=.|+| .|.++..+++. |. .+...+.++...+.|++.|....+.. ... ..+.+|+++-...
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~G~---~vi~~~~~~~~~~~a~~~Ga~~vi~~---~~~--~~~~~d~~i~~~~----- 232 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQGA---TVHVMTRGAAARRLALALGAASAGGA---YDT--PPEPLDAAILFAP----- 232 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHCCC---eEEEEeCChHHHHHHHHhCCceeccc---ccc--CcccceEEEECCC-----
Confidence 3489989975 34555555554 33 45566788888999998886533221 111 1235787653221
Q ss_pred cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 279 AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 279 ~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
. ...+.+..+.|++||++++.+.
T Consensus 233 -~-~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 233 -A-GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred -c-HHHHHHHHHhhCCCcEEEEEec
Confidence 1 2468889999999999998774
No 418
>PRK10742 putative methyltransferase; Provisional
Probab=80.08 E-value=5.7 Score=40.93 Aligned_cols=86 Identities=13% Similarity=0.049 Sum_probs=54.9
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHH---HHcC-----------CCeEEEEc
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFA---LERG-----------IPAFVAML 253 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A---~erg-----------~~~~~~~~ 253 (595)
+.|.+.+..+.+..-+|||.=+|.|..+..++.+|.. ++.+|-|+...... .++. -+..+...
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~---V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 3455666655554448999999999999999999764 66678777554332 3331 12344455
Q ss_pred cccc-CCCCCCceeEEEEcCCCcc
Q 007645 254 GTRR-LPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 254 d~~~-LPfpd~sFDlV~~s~vL~h 276 (595)
+... |.-...+||+|+.--.+.|
T Consensus 153 da~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 153 SSLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred cHHHHHhhCCCCCcEEEECCCCCC
Confidence 5322 2212247999998877755
No 419
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=79.82 E-value=2.8 Score=46.50 Aligned_cols=117 Identities=19% Similarity=0.288 Sum_probs=59.0
Q ss_pred eeEEecccchhHHHhhhcCC---CeEEEEeccCCCC-CchhHHhhc----cchhhhcccCCCCCCC-------CCccchh
Q 007645 443 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFSTY-------PRTYDLI 507 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~---~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~wce~f~ty-------prtyDl~ 507 (595)
..|+||+||.||++.+|... .- .|+-.|-. .-+..+-++ |+-. +.--|.-...+ +.+||.|
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~~~g---~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMGDQG---EIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhCCCc---eEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcccccccccccCCEE
Confidence 46999999999998877542 11 23333433 444433222 3311 11112212222 2578887
Q ss_pred hcc----CccccccCCCCC--CCCCC-------hhhhHHhhcccccCCcEEEEeC----ChHHHHHHHHhHhc
Q 007645 508 HVS----GIESLIKNPGSN--KNSCS-------LVDLMVEMDRMLRPEGTVVVRD----SPEVIDKVSRIANT 563 (595)
Q Consensus 508 H~~----~~~s~~~~~~~~--~~~c~-------~~~~llEmdRiLRP~G~~i~rd----~~~~~~~~~~~~~~ 563 (595)
=++ +.-+.-+.|... ...-. -..||-++=|.|||||.+++.. ..+....|+.+++.
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~ 402 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLAR 402 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHh
Confidence 543 222211111100 00011 2478999999999999999872 22334445554443
No 420
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=79.73 E-value=8.8 Score=42.66 Aligned_cols=129 Identities=16% Similarity=0.268 Sum_probs=68.7
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhh----ccchh---hhcccCCCCCC--CC-CccchhhccC
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGLIG---VYHDWCEPFST--YP-RTYDLIHVSG 511 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGlig---~~~~wce~f~t--yp-rtyDl~H~~~ 511 (595)
..|+|++||.|.|+.+|...- ..|+-.|.. ..+..+-+ .|+-. .-.|+-+.+.. ++ .+||+|-++-
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dP 375 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDP 375 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECc
Confidence 479999999999999997653 345555544 44444332 23211 11222222222 22 5688874221
Q ss_pred ccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCChHH-HHHHHHhHhccCceeE---EeccCCCCCCCceEEEEE
Q 007645 512 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEV-IDKVSRIANTVRWTAA---VHDKEPGSNGREKILVAT 587 (595)
Q Consensus 512 ~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~~-~~~~~~~~~~~~W~~~---~~~~~~~~~~~~~~l~~~ 587 (595)
.|..+.+++-.+-+ |.|++.++++=++.. -..++.+.++ -|++. ..|.=+....=|-|.+..
T Consensus 376 ------------Pr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~~-gY~l~~i~~~DmFP~T~HvE~v~lL~ 441 (443)
T PRK13168 376 ------------PRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVEA-GYRLKRAGMLDMFPHTGHVESMALFE 441 (443)
T ss_pred ------------CCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhhC-CcEEEEEEEeccCCCCCcEEEEEEEE
Confidence 22233445544444 589999999955544 3445555332 35543 334444444445555544
Q ss_pred e
Q 007645 588 K 588 (595)
Q Consensus 588 K 588 (595)
|
T Consensus 442 r 442 (443)
T PRK13168 442 R 442 (443)
T ss_pred e
Confidence 3
No 421
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=79.61 E-value=11 Score=39.82 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=55.8
Q ss_pred ceEEEECCC-CcHHHHHHhhc-CCceEEEEeec---CcHHHHHHHHHcCCCeEEEEcccccC--CCCCCceeEEEEcCCC
Q 007645 202 RTALDMGCG-VASFGGSMLSE-NILTLSFAPRD---SHKAQIQFALERGIPAFVAMLGTRRL--PFPAFSFDIVHCSRCL 274 (595)
Q Consensus 202 r~VLDIGCG-tG~~a~~La~~-gv~~~~v~~vD---~s~~~l~~A~erg~~~~~~~~d~~~L--Pfpd~sFDlV~~s~vL 274 (595)
.+||=+|+| .|.++..+++. |. .+..++ .++..++.+++.|... +....+.. ....+.||+|+-.-.
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G~---~vi~~~~~~~~~~~~~~~~~~Ga~~--v~~~~~~~~~~~~~~~~d~vid~~g- 247 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRGF---EVYVLNRRDPPDPKADIVEELGATY--VNSSKTPVAEVKLVGEFDLIIEATG- 247 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCCHHHHHHHHHcCCEE--ecCCccchhhhhhcCCCCEEEECcC-
Confidence 488988987 35667767665 44 344444 3778888888877642 21111110 001245888875421
Q ss_pred cccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 275 IPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 275 ~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
....+.+..++|++||.+++.+.
T Consensus 248 ------~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 248 ------VPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred ------CHHHHHHHHHHccCCcEEEEEec
Confidence 12467889999999999998764
No 422
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=78.95 E-value=7.4 Score=39.02 Aligned_cols=100 Identities=12% Similarity=-0.087 Sum_probs=50.7
Q ss_pred cceEEEECCCCcHHHHHHhhc---CCceEEEEeecCcHHHHH-HHHHc---CCCeEEEEcccccCC----C----CCCce
Q 007645 201 LRTALDMGCGVASFGGSMLSE---NILTLSFAPRDSHKAQIQ-FALER---GIPAFVAMLGTRRLP----F----PAFSF 265 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~---gv~~~~v~~vD~s~~~l~-~A~er---g~~~~~~~~d~~~LP----f----pd~sF 265 (595)
+++|+++|.-.|..+..+++. -.....|.++|++..... .|.+. ...+.+.+++..... . .....
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 348999999998766655442 112347888898533322 22222 246778887754321 1 12334
Q ss_pred eEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 266 DIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 266 DlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.+|+--. +|-.++.-..|+....++++|+|+++.+
T Consensus 113 vlVilDs--~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 113 VLVILDS--SHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp EEEEESS------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred eEEEECC--CccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 4555432 3544566778888999999999999954
No 423
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=78.93 E-value=11 Score=39.09 Aligned_cols=129 Identities=12% Similarity=0.103 Sum_probs=77.7
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCC---CCCCceeEEEEcCCCcccc-
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLP---FPAFSFDIVHCSRCLIPFT- 278 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LP---fpd~sFDlV~~s~vL~h~~- 278 (595)
+++|+=||.|.+...|.+.|+. .+.++|+++.+.+.-+.+.. .....|+..+. ++. .+|+++...-=..+.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~--~~~a~e~~~~a~~~y~~N~~--~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ 76 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFE--VVWAVEIDPDACETYKANFP--EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSI 76 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEE--EEEEEESSHHHHHHHHHHHT--EEEESHGGGCHHHHHHH-T-SEEEEE---TTTST
T ss_pred cEEEEccCccHHHHHHHhcCcE--EEEEeecCHHHHHhhhhccc--ccccccccccccccccc-cceEEEeccCCceEec
Confidence 6999999999999999999853 46778999998888777755 66667766653 443 599999732111111
Q ss_pred -------cCHH-HH---HHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEeeccee
Q 007645 279 -------AYNA-TY---LIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTV 336 (595)
Q Consensus 279 -------~d~~-~~---L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~~~~~~ 336 (595)
++.. .+ +.++.+.++|.-.++=-++..........+..+.+.+++++|.+...--+..
T Consensus 77 ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~~vlna~ 145 (335)
T PF00145_consen 77 AGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLLSSKNGEVFKEILEELEELGYNVQWRVLNAA 145 (335)
T ss_dssp TSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEEEEEEGG
T ss_pred cccccccccccchhhHHHHHHHhhccceEEEecccceeeccccccccccccccccccceeehhccccHh
Confidence 1221 23 3444555688543332233222222223477788888999998875544433
No 424
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=78.62 E-value=12 Score=42.57 Aligned_cols=99 Identities=15% Similarity=0.132 Sum_probs=63.6
Q ss_pred cceEEEECCCCc-HHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEc-cc--------ccCC----------
Q 007645 201 LRTALDMGCGVA-SFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAML-GT--------RRLP---------- 259 (595)
Q Consensus 201 ~r~VLDIGCGtG-~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~-d~--------~~LP---------- 259 (595)
..+|+=+|||.- ..+...++. |. .+..+|.+++.++.+++.|........ +. ..+.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA---~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGA---IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 459999999975 444455544 43 577889999999999987754221111 00 0010
Q ss_pred CCC--CceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 260 FPA--FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 260 fpd--~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+.+ +.+|+|+..... .-...+..+.+++.+.+||||.++....
T Consensus 242 ~~~~~~gaDVVIetag~-pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTALI-PGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCCC-CcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 111 469999987543 2111333446999999999999998764
No 425
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.10 E-value=11 Score=40.22 Aligned_cols=94 Identities=13% Similarity=0.119 Sum_probs=61.8
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccC---------CCCCCceeEEEEcC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRL---------PFPAFSFDIVHCSR 272 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~L---------Pfpd~sFDlV~~s~ 272 (595)
.+||=+|+|.=.+...+..+..-+.+++..|+++..++.|++-|..+.......... -+-+..||+.+-..
T Consensus 171 s~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCs 250 (354)
T KOG0024|consen 171 SKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFDCS 250 (354)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEEcc
Confidence 399999999644444443332444578888999999999999776554433321100 12234588877544
Q ss_pred CCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 273 CLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 273 vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
-+ +..++.....||+||.+++.+
T Consensus 251 G~-------~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 251 GA-------EVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred Cc-------hHHHHHHHHHhccCCEEEEec
Confidence 33 345667788899999988876
No 426
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=77.84 E-value=4.3 Score=45.21 Aligned_cols=102 Identities=19% Similarity=0.276 Sum_probs=61.6
Q ss_pred cceEEEECCCCc--HHHHHHhhcCCceEEEEeecCcHHHHHHHHHc--C-----CCeEEE-EcccccCCCC-CCceeEEE
Q 007645 201 LRTALDMGCGVA--SFGGSMLSENILTLSFAPRDSHKAQIQFALER--G-----IPAFVA-MLGTRRLPFP-AFSFDIVH 269 (595)
Q Consensus 201 ~r~VLDIGCGtG--~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er--g-----~~~~~~-~~d~~~LPfp-d~sFDlV~ 269 (595)
.+.++|+|.|.| .+++.++-++ ..-.+.-+|.+.+|..++... + -...-. +.--..+|.. .+.||+|+
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~-t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQ-TKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhccc-ccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 457888888876 4555544443 223566789999888776543 1 111001 1112445644 34599999
Q ss_pred EcCCCcccccCH--HHHHHHH-HhhcCCCcEEEEEcC
Q 007645 270 CSRCLIPFTAYN--ATYLIEV-DRLLRPGGYLVISGP 303 (595)
Q Consensus 270 ~s~vL~h~~~d~--~~~L~Ei-~RvLRPGG~lvls~p 303 (595)
|++.+++..... .....+. .+..++||++++..+
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence 999998876221 2333443 445689999999865
No 427
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.27 E-value=19 Score=38.20 Aligned_cols=126 Identities=13% Similarity=0.107 Sum_probs=74.0
Q ss_pred EEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCC-CCceeEEEEcCCCcccc----
Q 007645 204 ALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFP-AFSFDIVHCSRCLIPFT---- 278 (595)
Q Consensus 204 VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfp-d~sFDlV~~s~vL~h~~---- 278 (595)
|+|+-||.|.+...|.+.|.. .+..+|+++.+.+.-+.+... .+...|+..+... -..+|+++...-=..+.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~--~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~ 77 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFK--CVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGK 77 (315)
T ss_pred CEEEecCccHHHHHHHHcCCe--EEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEecCCCcccchhcc
Confidence 589999999999999888864 356789999888887776544 3444565554311 12489998642111111
Q ss_pred ----cCH-HHHHHHHHhhc---CCCcEEEEEcC--CCCCCCCchhHHHHHHHHHHcCcEEEEeecc
Q 007645 279 ----AYN-ATYLIEVDRLL---RPGGYLVISGP--PVQWPKQDKEWADLQAVARALCYELIAVDGN 334 (595)
Q Consensus 279 ----~d~-~~~L~Ei~RvL---RPGG~lvls~p--~~~~~~~~~~w~~l~~la~~~~w~~v~~~~~ 334 (595)
++. ..++.++.|++ +|. +++.+. ..........+..+...++.++|.+.....+
T Consensus 78 ~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~~l~ 141 (315)
T TIGR00675 78 RKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYKVLN 141 (315)
T ss_pred cCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEEEEc
Confidence 122 24455555554 775 333332 1111112234666777778888887655433
No 428
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=76.21 E-value=4.1 Score=36.74 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=23.2
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEE
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSF 228 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v 228 (595)
.....|+|||.|.+.--|.+.|..+..+
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~Gi 86 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGI 86 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCcccc
Confidence 3469999999999999999888876544
No 429
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=76.04 E-value=2.8 Score=47.10 Aligned_cols=102 Identities=27% Similarity=0.320 Sum_probs=56.4
Q ss_pred eeEEecccchhHHHhhhcC----CCeEEEEeccCCCC-C---chhHHhhc-cchh--hh-cccCCCCCCCCCccchhh--
Q 007645 443 RNIMDMNAFFGGFAAALTS----DPVWVMNVVPARKS-S---TLSVIYDR-GLIG--VY-HDWCEPFSTYPRTYDLIH-- 508 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~----~~vwvmnv~p~~~~-~---~l~~i~eR-Glig--~~-~~wce~f~typrtyDl~H-- 508 (595)
-.||||.|+-||=..+|.. .-. |+-.|-+ + .|.--++| |+-- +. .|=...-..+|.+||.|-
T Consensus 115 ~~VLD~CAAPGgKTt~la~~l~~~g~----lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 115 QRVLDMAAAPGSKTTQIAALMNNQGA----IVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCE----EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 4799999999996655532 222 3333433 3 34434455 4321 11 111111123567899988
Q ss_pred --ccCccccccCCCCCCCC--CCh-------hhhHHhhcccccCCcEEEEe
Q 007645 509 --VSGIESLIKNPGSNKNS--CSL-------VDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 509 --~~~~~s~~~~~~~~~~~--c~~-------~~~llEmdRiLRP~G~~i~r 548 (595)
|++.-..-++|..-... -.+ ..||-..=+.|||||.+|++
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 66665544433221111 001 16788888999999999998
No 430
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=75.89 E-value=20 Score=35.29 Aligned_cols=94 Identities=22% Similarity=0.232 Sum_probs=58.0
Q ss_pred cceEEEECCCC-cHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEccccc---C-CCCCCceeEEEEcCCCc
Q 007645 201 LRTALDMGCGV-ASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRR---L-PFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 201 ~r~VLDIGCGt-G~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~---L-Pfpd~sFDlV~~s~vL~ 275 (595)
..+||..|+|. |..+..+++.. ...+...+.++...+.+++.+....+...+... + ....+.+|+++....-
T Consensus 135 ~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~- 211 (271)
T cd05188 135 GDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGG- 211 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCC-
Confidence 34899999985 66666666652 235666788888888887766332221111000 0 1123579999854211
Q ss_pred ccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 276 PFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 276 h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
...+..+.+.|+++|.++..+.
T Consensus 212 ------~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 212 ------PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred ------HHHHHHHHHhcccCCEEEEEcc
Confidence 1457778889999999998765
No 431
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=75.35 E-value=5.9 Score=39.17 Aligned_cols=109 Identities=15% Similarity=0.235 Sum_probs=61.3
Q ss_pred eEEecccchhHHHhhhcCCCeEEEEeccCC-CC---Cchh-HHhhccchh--------hhc-ccCCCCCCCCCccchhhc
Q 007645 444 NIMDMNAFFGGFAAALTSDPVWVMNVVPAR-KS---STLS-VIYDRGLIG--------VYH-DWCEPFSTYPRTYDLIHV 509 (595)
Q Consensus 444 nvmDm~~~~g~faa~l~~~~vwvmnv~p~~-~~---~~l~-~i~eRGlig--------~~~-~wce~f~typrtyDl~H~ 509 (595)
+|||.|||-|.+--.|.+.-.-- -++=+| .+ .--+ ++-.+|+-- +.. +| .+.-||+||-
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~------~~~qfdlvlD 142 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDF------LSGQFDLVLD 142 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcc------cccceeEEee
Confidence 89999999999999887654210 011111 11 1112 233344432 111 33 3578999998
Q ss_pred cCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCChHHHHHHHHh
Q 007645 510 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRI 560 (595)
Q Consensus 510 ~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~ 560 (595)
-+-+.... .......-.+.-++==++++|+|+|.|+|..=.-..+++.+.
T Consensus 143 KGT~DAis-Ls~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~ 192 (227)
T KOG1271|consen 143 KGTLDAIS-LSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEE 192 (227)
T ss_pred cCceeeee-cCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHH
Confidence 88776542 111111122234666789999999999998544334444443
No 432
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=74.85 E-value=26 Score=36.36 Aligned_cols=92 Identities=14% Similarity=0.098 Sum_probs=56.3
Q ss_pred ceEEEECCC-CcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCccccc
Q 007645 202 RTALDMGCG-VASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA 279 (595)
Q Consensus 202 r~VLDIGCG-tG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~ 279 (595)
.+||-+|+| .|..+..+++. |. .+...+.++...+.+++.+....+.........-..+.+|+++....
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~~G~---~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~------ 234 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARAMGF---ETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVV------ 234 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCC------
Confidence 478888887 66666666665 43 45566778888888876664322221110000001246898875321
Q ss_pred CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 280 YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 280 d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
....+.++.+.|+++|.++..+.
T Consensus 235 -~~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 235 -SGAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred -cHHHHHHHHHhcccCCEEEEECC
Confidence 13467888999999999998763
No 433
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=74.64 E-value=10 Score=41.17 Aligned_cols=97 Identities=22% Similarity=0.234 Sum_probs=68.5
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc-----CCCeEEEEcccccCCCC-CCceeEEEEcCCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER-----GIPAFVAMLGTRRLPFP-AFSFDIVHCSRCL 274 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er-----g~~~~~~~~d~~~LPfp-d~sFDlV~~s~vL 274 (595)
..+|||.=+|+|.=+...+..... ..+...|+++.+++.++++ +........|+..+=.. ...||+|=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~-~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi---- 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGV-VKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI---- 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCc-cEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec----
Confidence 448999999999888877665222 2788899999999998876 33344444454333211 267888753
Q ss_pred cccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 275 IPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 275 ~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.++- .+..++..+.+.+|.||++.++..
T Consensus 128 DPFG-SPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 128 DPFG-SPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred CCCC-CCchHHHHHHHHhhcCCEEEEEec
Confidence 2333 456889999999999999999765
No 434
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=74.54 E-value=19 Score=38.23 Aligned_cols=92 Identities=20% Similarity=0.166 Sum_probs=57.1
Q ss_pred ceEEEECCCC-cHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEccc------ccCCCCCCceeEEEEcCC
Q 007645 202 RTALDMGCGV-ASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGT------RRLPFPAFSFDIVHCSRC 273 (595)
Q Consensus 202 r~VLDIGCGt-G~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~------~~LPfpd~sFDlV~~s~v 273 (595)
.+||=.|+|. |..+..+++. |.. .+..+|.++...+++++.|....+...+. .++ .....+|+|+-.-.
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~G~~--~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~-~~~~g~d~vid~~g 254 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALAGAS--KIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRAL-TGGFGADVVIDAVG 254 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC--eEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHH-hCCCCCCEEEECCC
Confidence 4888888753 4555556655 332 36677888999999988776432211110 011 12235898874321
Q ss_pred CcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 274 LIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 274 L~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
. ...+.+..+.||+||.+++.+.
T Consensus 255 ------~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 255 ------R-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred ------C-HHHHHHHHHHhccCCEEEEECC
Confidence 1 2457778899999999998874
No 435
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=74.38 E-value=5.9 Score=38.54 Aligned_cols=55 Identities=11% Similarity=0.007 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHH
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE 243 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~e 243 (595)
...+++.+.+.... ....|||.=||+|+.+.+..+.|- ...++|+++...+.|.+
T Consensus 177 P~~l~~~lI~~~t~---~gdiVlDpF~GSGTT~~aa~~l~R---~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 177 PVELIERLIKASTN---PGDIVLDPFAGSGTTAVAAEELGR---RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -HHHHHHHHHHHS----TT-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhhhc---cceeeehhhhccChHHHHHHHcCC---eEEEEeCCHHHHHHhcC
Confidence 34455555554432 245899999999998888777654 57788999999998864
No 436
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=73.90 E-value=2.5 Score=42.59 Aligned_cols=103 Identities=20% Similarity=0.338 Sum_probs=55.9
Q ss_pred CCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC--CchhHHh--hccchhhhcccCCCCCC-CC--CccchhhccCc
Q 007645 440 PAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS--STLSVIY--DRGLIGVYHDWCEPFST-YP--RTYDLIHVSGI 512 (595)
Q Consensus 440 ~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~--~~l~~i~--eRGlig~~~~wce~f~t-yp--rtyDl~H~~~~ 512 (595)
.....++|.|||.|=..-.|+-+=.=.+-+|-...+ ++.+--+ +.+-+|.+. |..+-. -| .+||+|=+--|
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~--~~gLQ~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFY--CVGLQDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEE--ES-GGG----TT-EEEEEEES-
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEE--ecCHhhccCCCCcEeEEEehHh
Confidence 357889999999999998886654323333322222 3332111 223333322 222211 23 69999998777
Q ss_pred cccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh
Q 007645 513 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP 551 (595)
Q Consensus 513 ~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~ 551 (595)
..+.. .-.+...|.-.=.-|||+|.+|+.|+.
T Consensus 132 lghLT-------D~dlv~fL~RCk~~L~~~G~IvvKEN~ 163 (218)
T PF05891_consen 132 LGHLT-------DEDLVAFLKRCKQALKPNGVIVVKENV 163 (218)
T ss_dssp GGGS--------HHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hccCC-------HHHHHHHHHHHHHhCcCCcEEEEEecC
Confidence 76654 245556777777789999999997543
No 437
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=73.75 E-value=2.9 Score=43.72 Aligned_cols=117 Identities=16% Similarity=0.207 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhc-cccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHH------------HHH---cCC
Q 007645 183 ADKYIDKLKQYI-PITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQF------------ALE---RGI 246 (595)
Q Consensus 183 a~~yi~~L~~~l-~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~------------A~e---rg~ 246 (595)
+......+.+.+ ....-+..+|||+|||.|.-+......+. ..+.-.|.+...++. ..+ ...
T Consensus 98 S~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~--~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~ 175 (282)
T KOG2920|consen 98 SVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGA--VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHK 175 (282)
T ss_pred HHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhcc--ceeeeEecchhheeeecccceecchhhhhhhhhccc
Confidence 344445555443 11112244999999999977666655542 234444555444321 100 010
Q ss_pred CeEEEEc---ccccCCCCC-CceeEEEEcCCCcccccCHHHH-HHHHHhhcCCCcEEEEEcC
Q 007645 247 PAFVAML---GTRRLPFPA-FSFDIVHCSRCLIPFTAYNATY-LIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 247 ~~~~~~~---d~~~LPfpd-~sFDlV~~s~vL~h~~~d~~~~-L~Ei~RvLRPGG~lvls~p 303 (595)
...+... |. .+-... ..||+|.++..+.... ..... +......+++.|.+++..-
T Consensus 176 ~~~i~~s~l~dg-~~~~t~~~~ydlIlsSetiy~~~-~~~~~~~~~r~~l~~~D~~~~~aAK 235 (282)
T KOG2920|consen 176 VDEILNSLLSDG-VFNHTERTHYDLILSSETIYSID-SLAVLYLLHRPCLLKTDGVFYVAAK 235 (282)
T ss_pred ceeccccccccc-hhhhccccchhhhhhhhhhhCcc-hhhhhHhhhhhhcCCccchhhhhhH
Confidence 0111111 10 111111 2688888877664433 22333 5666777889999988764
No 438
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=73.16 E-value=5.2 Score=43.97 Aligned_cols=127 Identities=16% Similarity=0.181 Sum_probs=62.8
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhh----ccch-hhh----cccCCCCCCC---CCccchhhc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGLI-GVY----HDWCEPFSTY---PRTYDLIHV 509 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGli-g~~----~~wce~f~ty---prtyDl~H~ 509 (595)
++|||++||.|+|+-++....- -.|+-+|.. .-+..+-+ -|+- .-+ .|..+....+ .++||+|=+
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 6899999999999855333221 123333433 33332211 1321 011 1211111112 247898876
Q ss_pred cCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC------ChHHHHHHHHhHhccCceeEEe
Q 007645 510 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD------SPEVIDKVSRIANTVRWTAAVH 571 (595)
Q Consensus 510 ~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd------~~~~~~~~~~~~~~~~W~~~~~ 571 (595)
+--+-.-.............+++.-.-++|+|||.++... ..++.+-+.+-+..-..++++.
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l 367 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 6433100000000001245566666779999999999842 2345555666565555555544
No 439
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=72.96 E-value=33 Score=35.63 Aligned_cols=91 Identities=12% Similarity=0.142 Sum_probs=57.9
Q ss_pred ceEEEECC--CCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccC-----CCCCCceeEEEEcCC
Q 007645 202 RTALDMGC--GVASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRL-----PFPAFSFDIVHCSRC 273 (595)
Q Consensus 202 r~VLDIGC--GtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~L-----Pfpd~sFDlV~~s~v 273 (595)
.+||=.|+ |.|..+..+++. |. .+...+.+++..+.+++.|....+...+...+ ....+.+|+|+-.
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~G~---~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~-- 214 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLKGC---KVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDN-- 214 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEEC--
Confidence 38888884 467888878776 43 45556777888888888776433321111010 1123468998843
Q ss_pred CcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 274 LIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 274 L~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
. ....+.+..+.|++||.++..+.
T Consensus 215 ~------G~~~~~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 215 V------GGEFSNTVIGQMKKFGRIAICGA 238 (325)
T ss_pred C------CHHHHHHHHHHhCcCcEEEEecc
Confidence 2 12346888999999999998753
No 440
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=72.77 E-value=1 Score=48.20 Aligned_cols=53 Identities=15% Similarity=0.323 Sum_probs=33.5
Q ss_pred CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe--CChHHHHHHHH
Q 007645 502 RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR--DSPEVIDKVSR 559 (595)
Q Consensus 502 rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r--d~~~~~~~~~~ 559 (595)
+.||+|=|--.+- |. -.+.-....+|--+-.-|||||+||.. |...++.++++
T Consensus 144 ~~FDvVScQFalH-Y~----Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~ 198 (331)
T PF03291_consen 144 RKFDVVSCQFALH-YA----FESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLRE 198 (331)
T ss_dssp S-EEEEEEES-GG-GG----GSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC
T ss_pred CCcceeehHHHHH-Hh----cCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHh
Confidence 5999976543321 21 012233446888899999999999987 76666666665
No 441
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=72.53 E-value=5 Score=40.23 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=18.2
Q ss_pred hhHHhhcccccCCcEEEEeCCh
Q 007645 530 DLMVEMDRMLRPEGTVVVRDSP 551 (595)
Q Consensus 530 ~~llEmdRiLRP~G~~i~rd~~ 551 (595)
.+|.|.-=+||+||.+..-.++
T Consensus 164 ~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 164 TLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred hHHHHHHhhhhcCceEEEEeeH
Confidence 5888999999999999876444
No 442
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=71.82 E-value=32 Score=35.58 Aligned_cols=92 Identities=15% Similarity=0.216 Sum_probs=56.1
Q ss_pred ceEEEECCC-CcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccC----CCCCCceeEEEEcCCCc
Q 007645 202 RTALDMGCG-VASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRL----PFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 202 r~VLDIGCG-tG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~L----Pfpd~sFDlV~~s~vL~ 275 (595)
.+||-+|+| .|..+..+++. |.. .+..++.++...+.+++.+... +...+.... ....+.+|+++....
T Consensus 161 ~~vlI~g~g~vg~~~~~la~~~G~~--~v~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~vd~v~~~~~-- 235 (334)
T cd08234 161 DSVLVFGAGPIGLLLAQLLKLNGAS--RVTVAEPNEEKLELAKKLGATE-TVDPSREDPEAQKEDNPYGFDVVIEATG-- 235 (334)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCc--EEEEECCCHHHHHHHHHhCCeE-EecCCCCCHHHHHHhcCCCCcEEEECCC--
Confidence 488888865 24555555555 432 1445567788888887777542 221111110 113456999985421
Q ss_pred ccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 276 PFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 276 h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
....+.++.+.|+++|.++..+.
T Consensus 236 -----~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 236 -----VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred -----ChHHHHHHHHHHhcCCEEEEEec
Confidence 13568888999999999988764
No 443
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=71.63 E-value=21 Score=38.13 Aligned_cols=93 Identities=17% Similarity=0.116 Sum_probs=57.0
Q ss_pred ceEEEECCC-CcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEccc---ccC-CCCCCceeEEEEcCCCc
Q 007645 202 RTALDMGCG-VASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGT---RRL-PFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 202 r~VLDIGCG-tG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~---~~L-Pfpd~sFDlV~~s~vL~ 275 (595)
.+||=.|+| .|.++..+++. |.. .+..+|.++..++.+++.|....+...+. +.+ ....+.+|+|+-.-.
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~G~~--~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G-- 268 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAAGAS--QVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAG-- 268 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC--cEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCC--
Confidence 378778876 35566666654 331 35667889999999988776433221110 000 011235898884321
Q ss_pred ccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 276 PFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 276 h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
....+....+.|++||.+++.+.
T Consensus 269 -----~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 269 -----SVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred -----ChHHHHHHHHHHhcCCEEEEEcc
Confidence 13467788899999999998764
No 444
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=71.11 E-value=18 Score=38.34 Aligned_cols=93 Identities=11% Similarity=0.087 Sum_probs=54.8
Q ss_pred cceEEEECCC-CcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCccccc
Q 007645 201 LRTALDMGCG-VASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA 279 (595)
Q Consensus 201 ~r~VLDIGCG-tG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~ 279 (595)
..+||=+||| .|.++..++++-.-...+..+|.++..++.|++.+. .... ..+. .+..+|+|+-.-. . .
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~--~~~~---~~~~-~~~g~d~viD~~G--~--~ 233 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADE--TYLI---DDIP-EDLAVDHAFECVG--G--R 233 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCc--eeeh---hhhh-hccCCcEEEECCC--C--C
Confidence 3489999986 345555555531111245667888888888876332 1111 1111 1124888874321 1 0
Q ss_pred CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 280 YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 280 d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.....+.+..++||+||.+++.+.
T Consensus 234 ~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 234 GSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred ccHHHHHHHHHhCcCCcEEEEEee
Confidence 124578889999999999998763
No 445
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=71.03 E-value=5.7 Score=40.36 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=68.6
Q ss_pred eeEEecccchhHHHhhhcCC--CeEEEEeccCCCC-----CchhHHhhccc--hhhhc-ccCCCCCCCC-C-ccchhhcc
Q 007645 443 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-----STLSVIYDRGL--IGVYH-DWCEPFSTYP-R-TYDLIHVS 510 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~-----~~l~~i~eRGl--ig~~~-~wce~f~typ-r-tyDl~H~~ 510 (595)
..++++|||.|.|-++|... .+ |++=.+-. .-+.-|-+.|| |-++. |=-+-+..++ . +.|-|+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~---nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~-- 124 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEK---NFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIY-- 124 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCC---CEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEE--
Confidence 47999999999999998543 22 22222221 34456777777 44442 2122233333 3 777766
Q ss_pred Cccc-cccCCCCCCCCCChhhhHHhhcccccCCcEEEEe-CChHHHHH-HHHhHhc
Q 007645 511 GIES-LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDK-VSRIANT 563 (595)
Q Consensus 511 ~~~s-~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r-d~~~~~~~-~~~~~~~ 563 (595)
=.|. +|.--.-.+.|=--...|=++-|+|+|||.+-+. |..+..+. +......
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~ 180 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEH 180 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhc
Confidence 2333 3430011234444457888999999999999996 66666666 5555444
No 446
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=70.92 E-value=24 Score=36.81 Aligned_cols=94 Identities=20% Similarity=0.208 Sum_probs=57.1
Q ss_pred cceEEEECCCC-cHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEcc--cccCCCCCCceeEEEEcCCCcc
Q 007645 201 LRTALDMGCGV-ASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLG--TRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 201 ~r~VLDIGCGt-G~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d--~~~LPfpd~sFDlV~~s~vL~h 276 (595)
..+||-.|||. |..+..+++. |+. .+...+.++...+.+++.+....+...+ ...+....+.+|+++.....
T Consensus 166 ~~~VLI~g~g~vG~~~~~lak~~G~~--~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~-- 241 (339)
T cd08232 166 GKRVLVTGAGPIGALVVAAARRAGAA--EIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGA-- 241 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCc--EEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCC--
Confidence 34788888774 5666666654 432 4556677888888777766532221110 11222122458998854221
Q ss_pred cccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 277 FTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 277 ~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
...+.++.+.|+++|.++..+.
T Consensus 242 -----~~~~~~~~~~L~~~G~~v~~g~ 263 (339)
T cd08232 242 -----PAALASALRVVRPGGTVVQVGM 263 (339)
T ss_pred -----HHHHHHHHHHHhcCCEEEEEec
Confidence 3457888999999999997653
No 447
>PRK11524 putative methyltransferase; Provisional
Probab=70.83 E-value=8.6 Score=40.08 Aligned_cols=56 Identities=14% Similarity=0.127 Sum_probs=40.5
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG 245 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg 245 (595)
..+++.+..... ..+..|||-=||+|+.+.+..+.|- .+.|+|++++..+.|++|-
T Consensus 195 ~~L~erlI~~~S---~~GD~VLDPF~GSGTT~~AA~~lgR---~~IG~Ei~~~Y~~~a~~Rl 250 (284)
T PRK11524 195 EALLKRIILASS---NPGDIVLDPFAGSFTTGAVAKASGR---KFIGIEINSEYIKMGLRRL 250 (284)
T ss_pred HHHHHHHHHHhC---CCCCEEEECCCCCcHHHHHHHHcCC---CEEEEeCCHHHHHHHHHHH
Confidence 344455444443 2345899999999988877666543 5678899999999999883
No 448
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=70.39 E-value=10 Score=38.81 Aligned_cols=86 Identities=17% Similarity=0.143 Sum_probs=45.8
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHH---HHHHHc---C--C------CeEEEEc
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQI---QFALER---G--I------PAFVAML 253 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l---~~A~er---g--~------~~~~~~~ 253 (595)
+.|.+......+...+|||.=+|-|.-+..|+..|. .+++++-|+-.. +.+.++ . . ...+...
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~---~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC---KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT-----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC---eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 345556666655445899999999999988887664 677778776442 222222 1 1 2466666
Q ss_pred cccc-CCCCCCceeEEEEcCCCcc
Q 007645 254 GTRR-LPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 254 d~~~-LPfpd~sFDlV~~s~vL~h 276 (595)
|... |+.++++||+|..--+|.+
T Consensus 140 d~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 140 DALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp -CCCHCCCHSS--SEEEE--S---
T ss_pred CHHHHHhhcCCCCCEEEECCCCCC
Confidence 6433 5666899999999877755
No 449
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=70.01 E-value=26 Score=35.87 Aligned_cols=92 Identities=17% Similarity=0.155 Sum_probs=56.5
Q ss_pred ceEEEECCC-CcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEccc----ccCCCCCCceeEEEEcCCCc
Q 007645 202 RTALDMGCG-VASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGT----RRLPFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 202 r~VLDIGCG-tG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~----~~LPfpd~sFDlV~~s~vL~ 275 (595)
.+||=+|+| .|..+..+++. |.. .+..+|.++..++.+++.|....+...+. ..+ .....+|+|+-.-.
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~--~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~-~~~~g~d~vid~~G-- 196 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAA--RVVAADPSPDRRELALSFGATALAEPEVLAERQGGL-QNGRGVDVALEFSG-- 196 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC--EEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHH-hCCCCCCEEEECCC--
Confidence 378888876 34555555554 432 25556888888899988876432221110 111 12245888874321
Q ss_pred ccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 276 PFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 276 h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
....+.++.+.|+|+|++++.+.
T Consensus 197 -----~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 197 -----ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred -----ChHHHHHHHHHhcCCCEEEEecc
Confidence 13467888999999999998763
No 450
>PLN02476 O-methyltransferase
Probab=69.73 E-value=4.5 Score=42.39 Aligned_cols=133 Identities=11% Similarity=0.096 Sum_probs=67.8
Q ss_pred CCCeeeEEecccchhHHHhhhcC----C-CeEEEEeccCCCCCchhHHhhccchh---h-hcccCCCCCC-----CCCcc
Q 007645 439 TPAIRNIMDMNAFFGGFAAALTS----D-PVWVMNVVPARKSSTLSVIYDRGLIG---V-YHDWCEPFST-----YPRTY 504 (595)
Q Consensus 439 ~~~~RnvmDm~~~~g~faa~l~~----~-~vwvmnv~p~~~~~~l~~i~eRGlig---~-~~~wce~f~t-----yprty 504 (595)
..+-++||++|+++|..+.+|.. . .|.++=.-|....-.-+.+-+-|+-. + ..|-.|.++. ...+|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 34468999999999998887743 1 24443322211111111222233310 0 0111111111 13578
Q ss_pred chhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC-------------ChH---HHHHHHHhHhccCcee
Q 007645 505 DLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-------------SPE---VIDKVSRIANTVRWTA 568 (595)
Q Consensus 505 Dl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd-------------~~~---~~~~~~~~~~~~~W~~ 568 (595)
|+|=.+.- +=....++-+.=+.|||||.+|+-+ +.. +-+-.+.+...=+++.
T Consensus 196 D~VFIDa~------------K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~ 263 (278)
T PLN02476 196 DFAFVDAD------------KRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSI 263 (278)
T ss_pred CEEEECCC------------HHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEE
Confidence 88763332 2233445555568999999999741 011 1222333455566777
Q ss_pred EEeccCCCCCCCceEEEEEec
Q 007645 569 AVHDKEPGSNGREKILVATKS 589 (595)
Q Consensus 569 ~~~~~~~~~~~~~~~l~~~K~ 589 (595)
.+.-. .+.++|++|+
T Consensus 264 ~llPi------gDGl~i~~K~ 278 (278)
T PLN02476 264 SMVPI------GDGMTICRKR 278 (278)
T ss_pred EEEEe------CCeeEEEEEC
Confidence 66622 3578888874
No 451
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=68.98 E-value=6.6 Score=38.57 Aligned_cols=135 Identities=17% Similarity=0.292 Sum_probs=73.5
Q ss_pred hhhhHHHHHHHHHHHhhhccCCCCeeeEEecccchh--HHHhhhcCCCeEEEEeccCCCC----Cchh-HHhhccc--hh
Q 007645 418 DSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFG--GFAAALTSDPVWVMNVVPARKS----STLS-VIYDRGL--IG 488 (595)
Q Consensus 418 d~~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g--~faa~l~~~~vwvmnv~p~~~~----~~l~-~i~eRGl--ig 488 (595)
..+.|.+++-.=...+ +.+..... +++|+|+|-| |.--|+...+.= |+-.++. +=|. ++-+=|| +=
T Consensus 27 ~~~~~~~Hi~DSL~~~-~~~~~~~~-~~lDiGSGaGfPGipLaI~~p~~~---~~LvEs~~KK~~FL~~~~~~L~L~nv~ 101 (184)
T PF02527_consen 27 PEEIWERHILDSLALL-PFLPDFGK-KVLDIGSGAGFPGIPLAIARPDLQ---VTLVESVGKKVAFLKEVVRELGLSNVE 101 (184)
T ss_dssp HHHHHHHHHHHHHGGG-GCS-CCCS-EEEEETSTTTTTHHHHHHH-TTSE---EEEEESSHHHHHHHHHHHHHHT-SSEE
T ss_pred HHHHHHHHHHHHHHhh-hhhccCCc-eEEecCCCCCChhHHHHHhCCCCc---EEEEeCCchHHHHHHHHHHHhCCCCEE
Confidence 3477776665533322 23443333 6999999944 222233333321 2222221 2222 4555666 34
Q ss_pred hhcccCCCCCCCCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC---hHHHHHHHHhHhccC
Q 007645 489 VYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS---PEVIDKVSRIANTVR 565 (595)
Q Consensus 489 ~~~~wce~f~typrtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~---~~~~~~~~~~~~~~~ 565 (595)
++|.-.|. ..++..||+|=|--+ +++..++--+-+.|+|||.++.-.- .+.+++.++-.+.+.
T Consensus 102 v~~~R~E~-~~~~~~fd~v~aRAv-------------~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~ 167 (184)
T PF02527_consen 102 VINGRAEE-PEYRESFDVVTARAV-------------APLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLG 167 (184)
T ss_dssp EEES-HHH-TTTTT-EEEEEEESS-------------SSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCC
T ss_pred EEEeeecc-cccCCCccEEEeehh-------------cCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhC
Confidence 56666666 557899999873222 4455566667889999999988543 344555566666666
Q ss_pred ceeEEe
Q 007645 566 WTAAVH 571 (595)
Q Consensus 566 W~~~~~ 571 (595)
++....
T Consensus 168 ~~~~~v 173 (184)
T PF02527_consen 168 LKVLSV 173 (184)
T ss_dssp EEEEEE
T ss_pred CEEeee
Confidence 665443
No 452
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=68.81 E-value=29 Score=36.29 Aligned_cols=93 Identities=17% Similarity=0.124 Sum_probs=56.1
Q ss_pred ceEEEECCC-CcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEccc--ccC-C-CCCCceeEEEEcCCCc
Q 007645 202 RTALDMGCG-VASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGT--RRL-P-FPAFSFDIVHCSRCLI 275 (595)
Q Consensus 202 r~VLDIGCG-tG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~--~~L-P-fpd~sFDlV~~s~vL~ 275 (595)
.+||=+|+| .|.++..+++. |.. .+..++.+++..+.+++.|....+...+. +.+ . ...+.+|+|+-...
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~G~~--~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g-- 240 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARALGAE--DVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSG-- 240 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC--EEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCC--
Confidence 378888875 34455555554 432 25667888888899888776432221110 011 0 12346899884321
Q ss_pred ccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 276 PFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 276 h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
....+.+..+.|+++|.+++.+.
T Consensus 241 -----~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 241 -----NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred -----CHHHHHHHHHHhhcCCEEEEEcC
Confidence 13356778899999999998764
No 453
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=68.56 E-value=40 Score=35.85 Aligned_cols=91 Identities=10% Similarity=0.064 Sum_probs=58.0
Q ss_pred ceEEEECC--CCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHH-HcCCCeEEEEc---cc-ccC-CCCCCceeEEEEcC
Q 007645 202 RTALDMGC--GVASFGGSMLSE-NILTLSFAPRDSHKAQIQFAL-ERGIPAFVAML---GT-RRL-PFPAFSFDIVHCSR 272 (595)
Q Consensus 202 r~VLDIGC--GtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~-erg~~~~~~~~---d~-~~L-Pfpd~sFDlV~~s~ 272 (595)
.+||=.|+ |.|.++..+++. |. .+...+.++...+.++ +.|....+... +. +.+ ....+.+|+|+-.-
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~G~---~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~v 236 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLHGC---YVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNV 236 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCC---EEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECC
Confidence 48988887 377888888776 43 4556677888888776 56654333211 11 000 11124689888431
Q ss_pred CCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 273 CLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 273 vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
. ...+.+..+.|++||.+++.+.
T Consensus 237 -------G-~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 237 -------G-GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred -------C-HHHHHHHHHHhccCCEEEEECc
Confidence 1 2467888999999999998764
No 454
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=68.27 E-value=2.3 Score=43.32 Aligned_cols=100 Identities=18% Similarity=0.227 Sum_probs=65.8
Q ss_pred CCeeeEEecccchhHHHhhhcCCCe--EEEEeccCCCCCchhHHhhccchhhhcccCCCCCCCC-CccchhhccCccccc
Q 007645 440 PAIRNIMDMNAFFGGFAAALTSDPV--WVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYP-RTYDLIHVSGIESLI 516 (595)
Q Consensus 440 ~~~RnvmDm~~~~g~faa~l~~~~v--wvmnv~p~~~~~~l~~i~eRGlig~~~~wce~f~typ-rtyDl~H~~~~~s~~ 516 (595)
...-.++|+||++|-.+-.|+...| ++|-=...+.-.+-+-.-|-+++-.|-.--|-|-.|- +++|||- +++--+|
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLii-sSlslHW 149 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLII-SSLSLHW 149 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhh-hhhhhhh
Confidence 3477899999999999999998876 3332222221122223444566666666667766665 8999986 4444556
Q ss_pred cCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 517 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 517 ~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
. -.+.--|+-.--+|+|.|.||-+
T Consensus 150 ~--------NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 150 T--------NDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred h--------ccCchHHHHHHHhcCCCccchhH
Confidence 5 23344566777789999999854
No 455
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=67.95 E-value=10 Score=38.60 Aligned_cols=131 Identities=17% Similarity=0.286 Sum_probs=86.7
Q ss_pred eeEEecccchhHHHhhhc-----CCCeEEEEeccCCCCCchhHHhhcc-chhhhcccCCCCCCCCCccchh--hccCccc
Q 007645 443 RNIMDMNAFFGGFAAALT-----SDPVWVMNVVPARKSSTLSVIYDRG-LIGVYHDWCEPFSTYPRTYDLI--HVSGIES 514 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~-----~~~vwvmnv~p~~~~~~l~~i~eRG-lig~~~~wce~f~typrtyDl~--H~~~~~s 514 (595)
-.||-.||..|.....+. +-.|...-+.|....+-|.++-.|= +|.++.| .++|-.|-++ ..+-+|.
T Consensus 75 skVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~D-----Ar~P~~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 75 SKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILED-----ARHPEKYRMLVEMVDVIFQ 149 (229)
T ss_dssp -EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES------TTSGGGGTTTS--EEEEEE
T ss_pred CEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeecc-----CCChHHhhcccccccEEEe
Confidence 479999999999888873 3368888888888888888888887 8889977 5677666544 3445555
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEEe----------CChHHHHHHHHhHhccCcee-EEeccCCCCCCCceE
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR----------DSPEVIDKVSRIANTVRWTA-AVHDKEPGSNGREKI 583 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r----------d~~~~~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~ 583 (595)
... .+-..+.+++=++.-|++||+++|. +..++..+..+.++.-..+. ...+.|+ ..++..
T Consensus 150 DVa------Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LeP--y~~dH~ 221 (229)
T PF01269_consen 150 DVA------QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEP--YERDHA 221 (229)
T ss_dssp E-S------STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TT--TSTTEE
T ss_pred cCC------ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCC--CCCCcE
Confidence 543 4455667889999999999999985 33344444444444433443 2334443 345555
Q ss_pred EEE
Q 007645 584 LVA 586 (595)
Q Consensus 584 l~~ 586 (595)
+|.
T Consensus 222 ~vv 224 (229)
T PF01269_consen 222 MVV 224 (229)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 456
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=66.83 E-value=4.7 Score=40.40 Aligned_cols=99 Identities=22% Similarity=0.265 Sum_probs=47.3
Q ss_pred HHHHHHhhhccCCCCeeeEEecccchhHHHhhhc---CCCeEEEEeccCCCC-CchhHHhhc-cc---hhhhcccCCCCC
Q 007645 427 AYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALT---SDPVWVMNVVPARKS-STLSVIYDR-GL---IGVYHDWCEPFS 498 (595)
Q Consensus 427 ~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~---~~~vwvmnv~p~~~~-~~l~~i~eR-Gl---ig~~~~wce~f~ 498 (595)
....+.|. ++.+ -.|||+|||.|=++|.|. .+.--|..|=....- ..-.-.+++ |+ .-+..|=. .
T Consensus 62 a~~l~~L~--l~pg--~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~---~ 134 (209)
T PF01135_consen 62 ARMLEALD--LKPG--DRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGS---E 134 (209)
T ss_dssp HHHHHHTT--C-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GG---G
T ss_pred HHHHHHHh--cCCC--CEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchh---h
Confidence 34444455 5666 479999999998877773 222223332211110 111112221 22 11222322 2
Q ss_pred CCC--CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEE
Q 007645 499 TYP--RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 499 typ--rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
-+| -.||.||...-.. .+..-|+|. |+|||.+|+
T Consensus 135 g~~~~apfD~I~v~~a~~------------~ip~~l~~q---L~~gGrLV~ 170 (209)
T PF01135_consen 135 GWPEEAPFDRIIVTAAVP------------EIPEALLEQ---LKPGGRLVA 170 (209)
T ss_dssp TTGGG-SEEEEEESSBBS------------S--HHHHHT---EEEEEEEEE
T ss_pred ccccCCCcCEEEEeeccc------------hHHHHHHHh---cCCCcEEEE
Confidence 344 3699999554333 122345554 999999986
No 457
>PRK13699 putative methylase; Provisional
Probab=66.28 E-value=13 Score=37.63 Aligned_cols=55 Identities=13% Similarity=-0.004 Sum_probs=40.0
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER 244 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er 244 (595)
..+++.+.+.... . ...|||-=||+|+.+.+..+.+- .+.++|+++...+.|.+|
T Consensus 150 ~~l~~~~i~~~s~-~--g~~vlDpf~Gsgtt~~aa~~~~r---~~~g~e~~~~y~~~~~~r 204 (227)
T PRK13699 150 VTSLQPLIESFTH-P--NAIVLDPFAGSGSTCVAALQSGR---RYIGIELLEQYHRAGQQR 204 (227)
T ss_pred HHHHHHHHHHhCC-C--CCEEEeCCCCCCHHHHHHHHcCC---CEEEEecCHHHHHHHHHH
Confidence 4445555544332 3 34899999999999888777654 566889999999988877
No 458
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=65.12 E-value=26 Score=37.63 Aligned_cols=93 Identities=20% Similarity=0.205 Sum_probs=62.0
Q ss_pred eEEEECCCC-cHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccc-----cCCCCC-CceeEEEEcCCCc
Q 007645 203 TALDMGCGV-ASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTR-----RLPFPA-FSFDIVHCSRCLI 275 (595)
Q Consensus 203 ~VLDIGCGt-G~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~-----~LPfpd-~sFDlV~~s~vL~ 275 (595)
+|+=+|||. |.++..+++. .-...+..+|.++..++.|++.+....+.....+ .+.... ..||+++=.-.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~-~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-- 247 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKL-LGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-- 247 (350)
T ss_pred EEEEECCCHHHHHHHHHHHH-cCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC--
Confidence 899999995 7776666665 2234667779999999999995432222211110 011122 36899884432
Q ss_pred ccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 276 PFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 276 h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
...++..+.+++||||.+++.+-
T Consensus 248 -----~~~~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 248 -----SPPALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred -----CHHHHHHHHHHhcCCCEEEEEec
Confidence 23478999999999999999875
No 459
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=65.06 E-value=16 Score=41.49 Aligned_cols=95 Identities=16% Similarity=0.091 Sum_probs=60.7
Q ss_pred cceEEEECCCCc-HHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEccccc---------------------
Q 007645 201 LRTALDMGCGVA-SFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRR--------------------- 257 (595)
Q Consensus 201 ~r~VLDIGCGtG-~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~--------------------- 257 (595)
..+||=+|+|.- ..+..++.. |. .+..+|.+++.++.+++.|... +..+...
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA---~V~v~d~~~~rle~a~~lGa~~--v~v~~~e~g~~~~gYa~~~s~~~~~~~~ 238 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGA---IVRAFDTRPEVKEQVQSMGAEF--LELDFKEEGGSGDGYAKVMSEEFIAAEM 238 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHcCCeE--EeccccccccccccceeecCHHHHHHHH
Confidence 358999999965 555545444 43 4666799999888888765432 2222100
Q ss_pred --CCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEE
Q 007645 258 --LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 258 --LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls 301 (595)
++-.-..+|+|++.-.. +-...+..+.+++.+.+|||+.++-.
T Consensus 239 ~~~~e~~~~~DIVI~Tali-pG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 239 ELFAAQAKEVDIIITTALI-PGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHHHhCCCCEEEECccc-CCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 11112469999876533 43334456788999999999998743
No 460
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=64.87 E-value=32 Score=36.58 Aligned_cols=60 Identities=13% Similarity=0.073 Sum_probs=49.3
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG 245 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg 245 (595)
..+++...+.+....+. ..+|.--|.|..+.+++++......+.++|-++.+++.|+++-
T Consensus 9 pVLl~E~i~~L~~~~~g--iyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l 68 (314)
T COG0275 9 PVLLNEVVELLAPKPDG--IYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERL 68 (314)
T ss_pred chHHHHHHHhcccCCCc--EEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHh
Confidence 44566777777766654 8999999999999999998655567999999999999999864
No 461
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=64.56 E-value=11 Score=41.67 Aligned_cols=111 Identities=14% Similarity=0.202 Sum_probs=57.4
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhh----ccch---hhhcccCCCCCCCC---CccchhhccC
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGLI---GVYHDWCEPFSTYP---RTYDLIHVSG 511 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGli---g~~~~wce~f~typ---rtyDl~H~~~ 511 (595)
..|+|++||+|.|+..|.+.-- .|+-.+.. .-+..+-+ .|+- -+..|..+.++.++ .+||+|=.
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~-- 368 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLL-- 368 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEE--
Confidence 4799999999999999975421 23333332 33322221 2321 01112222122222 35676542
Q ss_pred ccccccCCCCCCCCCC-hhhhHHhhcccccCCcEEEEeCChHHHHHHHHhHhccCceeE
Q 007645 512 IESLIKNPGSNKNSCS-LVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAA 569 (595)
Q Consensus 512 ~~s~~~~~~~~~~~c~-~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~~~~~W~~~ 569 (595)
|| .|-. ...++-++.+ |+|+|.++++-++..+.+--+.+..-.|++.
T Consensus 369 ------dP----Pr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~ 416 (431)
T TIGR00479 369 ------DP----PRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGIT 416 (431)
T ss_pred ------Cc----CCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEE
Confidence 22 1222 2334444444 8899999999777776554444444446543
No 462
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=64.47 E-value=24 Score=37.66 Aligned_cols=95 Identities=18% Similarity=0.164 Sum_probs=58.3
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCce
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSF 265 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sF 265 (595)
.++.+.+.+...++. ..+|.=-|.|..+..++++-.. ..+.++|-++.+++.|+++-. ++ ++.|
T Consensus 8 ll~Evl~~L~~~~~g--~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~------------~~-~~r~ 71 (310)
T PF01795_consen 8 LLKEVLEALNPKPGG--IYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLK------------KF-DDRF 71 (310)
T ss_dssp THHHHHHHHT--TT---EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTC------------CC-CTTE
T ss_pred cHHHHHHhhCcCCCc--eEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHh------------hc-cceE
Confidence 345566666655544 8999999999999999988444 689999999999999976542 12 4667
Q ss_pred eEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 266 DIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 266 DlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.+++.++ .+....+.+...+-+.+|.|+=.+
T Consensus 72 ~~~~~~F------~~l~~~l~~~~~~~~~dgiL~DLG 102 (310)
T PF01795_consen 72 IFIHGNF------SNLDEYLKELNGINKVDGILFDLG 102 (310)
T ss_dssp EEEES-G------GGHHHHHHHTTTTS-EEEEEEE-S
T ss_pred EEEeccH------HHHHHHHHHccCCCccCEEEEccc
Confidence 7877653 233444444433335567766443
No 463
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=63.72 E-value=31 Score=35.94 Aligned_cols=85 Identities=15% Similarity=0.162 Sum_probs=53.2
Q ss_pred ceEEEECCC-CcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCccccc
Q 007645 202 RTALDMGCG-VASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA 279 (595)
Q Consensus 202 r~VLDIGCG-tG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~ 279 (595)
.++|=+||| .|.++..+++. |.. .+..+|.++..++.|.+... .+.... ....||+|+-.-.
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~~--~v~~~~~~~~rl~~a~~~~~------i~~~~~--~~~g~Dvvid~~G------ 209 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGGS--PPAVWETNPRRRDGATGYEV------LDPEKD--PRRDYRAIYDASG------ 209 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCc--eEEEeCCCHHHHHhhhhccc------cChhhc--cCCCCCEEEECCC------
Confidence 368888876 46777777765 543 24445777777777654321 111110 2246898885421
Q ss_pred CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 280 YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 280 d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
....+.++.+.|++||++++.+.
T Consensus 210 -~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 -DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred -CHHHHHHHHHhhhcCcEEEEEee
Confidence 13467888999999999998764
No 464
>PLN02740 Alcohol dehydrogenase-like
Probab=63.46 E-value=45 Score=35.89 Aligned_cols=93 Identities=18% Similarity=0.138 Sum_probs=56.1
Q ss_pred ceEEEECCC-CcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEccc-----ccC-CCCCCceeEEEEcCC
Q 007645 202 RTALDMGCG-VASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGT-----RRL-PFPAFSFDIVHCSRC 273 (595)
Q Consensus 202 r~VLDIGCG-tG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~-----~~L-Pfpd~sFDlV~~s~v 273 (595)
.+||=+|+| .|..+..+++. |. ..+..+|.+++.++.+++.|....+...+. +.+ ....+.+|+|+-.-.
T Consensus 200 ~~VlV~G~G~vG~~a~q~ak~~G~--~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G 277 (381)
T PLN02740 200 SSVAIFGLGAVGLAVAEGARARGA--SKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECAG 277 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC--CcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence 388888876 24555555554 33 135667888999999988776433221110 000 011236898875321
Q ss_pred CcccccCHHHHHHHHHhhcCCC-cEEEEEcC
Q 007645 274 LIPFTAYNATYLIEVDRLLRPG-GYLVISGP 303 (595)
Q Consensus 274 L~h~~~d~~~~L~Ei~RvLRPG-G~lvls~p 303 (595)
....+.+..+.+++| |.+++.+.
T Consensus 278 -------~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 278 -------NVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred -------ChHHHHHHHHhhhcCCCEEEEEcc
Confidence 134677788889997 99988763
No 465
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=62.75 E-value=60 Score=34.60 Aligned_cols=123 Identities=10% Similarity=0.110 Sum_probs=76.8
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCC---CCCCceeEEEEcCCCcccc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLP---FPAFSFDIVHCSRCLIPFT 278 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LP---fpd~sFDlV~~s~vL~h~~ 278 (595)
.+++|+=||.|.+...+...|+. -+..+|+++.+++.-+.+.....+...|+..+. +....+|+++...-=..+.
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~--~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS 81 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFE--IVFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFS 81 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCe--EEEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchh
Confidence 47999999999999999998865 345679999888877777654555555554332 1112789999743211211
Q ss_pred --------cCH-H---HHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcE
Q 007645 279 --------AYN-A---TYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYE 327 (595)
Q Consensus 279 --------~d~-~---~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~ 327 (595)
+|. . .-+.++...++| -.|++--.+.........|+.+.+.++++++.
T Consensus 82 ~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 82 IAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEELGYG 141 (328)
T ss_pred hcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHHHcCCc
Confidence 122 1 334555556688 44444322222222344688899999999987
No 466
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=62.35 E-value=34 Score=37.99 Aligned_cols=99 Identities=14% Similarity=0.071 Sum_probs=60.4
Q ss_pred HHHHHhhccc-cCCCcceEEEECCCC-cHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCC
Q 007645 187 IDKLKQYIPI-TGGTLRTALDMGCGV-ASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAF 263 (595)
Q Consensus 187 i~~L~~~l~~-~~g~~r~VLDIGCGt-G~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~ 263 (595)
.+.+.+.... .. .++|+=+|+|. |...+.+++. |. .+..+|.++...+.|++.|.... ..+ +.+ .
T Consensus 189 ~~~i~r~t~~~l~--GktVvViG~G~IG~~va~~ak~~Ga---~ViV~d~d~~R~~~A~~~G~~~~--~~~-e~v----~ 256 (413)
T cd00401 189 IDGIKRATDVMIA--GKVAVVAGYGDVGKGCAQSLRGQGA---RVIVTEVDPICALQAAMEGYEVM--TME-EAV----K 256 (413)
T ss_pred HHHHHHhcCCCCC--CCEEEEECCCHHHHHHHHHHHHCCC---EEEEEECChhhHHHHHhcCCEEc--cHH-HHH----c
Confidence 4555554432 23 34999999995 5555544443 44 45557888888888888775321 111 111 3
Q ss_pred ceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 264 SFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 264 sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.+|+|+..- .....+-.+..+.+|+||.++..+.
T Consensus 257 ~aDVVI~at------G~~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 257 EGDIFVTTT------GNKDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred CCCEEEECC------CCHHHHHHHHHhcCCCCcEEEEeCC
Confidence 479998642 1223233445889999999999874
No 467
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=61.92 E-value=8.5 Score=36.59 Aligned_cols=94 Identities=11% Similarity=0.070 Sum_probs=48.5
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc--c--hhhhcccCCCCCCCC-CccchhhccCccccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG--L--IGVYHDWCEPFSTYP-RTYDLIHVSGIESLI 516 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG--l--ig~~~~wce~f~typ-rtyDl~H~~~~~s~~ 516 (595)
.+|+|+|||.|.++..|.+.. -.|+-.+-. ..+..+-++- . +-+++.=.+.+. ++ ..||.|=++--|.
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~-~~~~~~d~vi~n~Py~-- 88 (169)
T smart00650 15 DTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD-LPKLQPYKVVGNLPYN-- 88 (169)
T ss_pred CEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC-ccccCCCEEEECCCcc--
Confidence 589999999999999998763 234444443 3444433331 0 111111111111 23 2467664332222
Q ss_pred cCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC
Q 007645 517 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 550 (595)
Q Consensus 517 ~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~ 550 (595)
..-.+-.-+++... +.++|+++++.+
T Consensus 89 -------~~~~~i~~~l~~~~-~~~~~~l~~q~e 114 (169)
T smart00650 89 -------ISTPILFKLLEEPP-AFRDAVLMVQKE 114 (169)
T ss_pred -------cHHHHHHHHHhcCC-CcceEEEEEEHH
Confidence 11122233455433 669999999853
No 468
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.58 E-value=2.8 Score=40.31 Aligned_cols=45 Identities=20% Similarity=0.275 Sum_probs=35.6
Q ss_pred CCCCCCCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 495 EPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 495 e~f~typrtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
..|.+ ++-|+|-|.++..+.. - -....-+-|--|+|||||++-+.
T Consensus 41 ~~F~d--ns~d~iyaeHvlEHlt------~-~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 41 SMFED--NSVDAIYAEHVLEHLT------Y-DEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred ccCCC--cchHHHHHHHHHHHHh------H-HHHHHHHHHHHHHhCcCcEEEEE
Confidence 34554 9999999999998764 1 23446788999999999999885
No 469
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=61.29 E-value=19 Score=31.40 Aligned_cols=75 Identities=19% Similarity=0.073 Sum_probs=47.0
Q ss_pred ECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccCHHHHHH
Q 007645 207 MGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLI 286 (595)
Q Consensus 207 IGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~ 286 (595)
+-||+|.-+..+++. +.+.+.++|.+..+...+.....-....+|+|+++- +....+.
T Consensus 4 ~~Cg~G~sTS~~~~k---------------i~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~P-------qv~~~~~ 61 (96)
T cd05564 4 LVCSAGMSTSILVKK---------------MKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGP-------QVRYMLD 61 (96)
T ss_pred EEcCCCchHHHHHHH---------------HHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEECh-------hHHHHHH
Confidence 458888666555442 456778889888877776555432345689999763 3344567
Q ss_pred HHHhhcCCCcEEEEEcC
Q 007645 287 EVDRLLRPGGYLVISGP 303 (595)
Q Consensus 287 Ei~RvLRPGG~lvls~p 303 (595)
++.+.+.+.+.-+...+
T Consensus 62 ~i~~~~~~~~~pv~~I~ 78 (96)
T cd05564 62 EVKKKAAEYGIPVAVID 78 (96)
T ss_pred HHHHHhccCCCcEEEcC
Confidence 77765555555444444
No 470
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=60.90 E-value=5.7 Score=44.50 Aligned_cols=98 Identities=14% Similarity=0.122 Sum_probs=69.2
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--eEEEEccc----ccCCCCCCceeEEEE
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGT----RRLPFPAFSFDIVHC 270 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~~d~----~~LPfpd~sFDlV~~ 270 (595)
.-+|||.=|++|.-+...+..-..+..+...|.+++.+...+++ +.. ++....|+ ...+-.+..||+|..
T Consensus 110 ~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvIDL 189 (525)
T KOG1253|consen 110 SLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVIDL 189 (525)
T ss_pred cchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEec
Confidence 34799999999987777776633356888899999999877655 111 12223332 223445678999984
Q ss_pred cCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 271 SRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 271 s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.++. .+..+|..+.+.++.||.|.++..
T Consensus 190 ----DPyG-s~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 190 ----DPYG-SPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred ----CCCC-CccHHHHHHHHHhhcCCEEEEEec
Confidence 3443 456899999999999999999765
No 471
>PRK10458 DNA cytosine methylase; Provisional
Probab=60.63 E-value=1.9e+02 Score=32.69 Aligned_cols=125 Identities=12% Similarity=0.151 Sum_probs=71.7
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---CCeEEEEcccccCCCC----------------
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRRLPFP---------------- 261 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---~~~~~~~~d~~~LPfp---------------- 261 (595)
.-+++|+=||.|.+...+...|+. .+..+|+++.+.+.-+.+. ........|+..+...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~--~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~ 165 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQ--CVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQ 165 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCE--EEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhc
Confidence 348999999999999999888875 3567798888877666653 2223333444433210
Q ss_pred -CCceeEEEEcCCCcccc------------------cCHHHHHHHHHhhc---CCCcEEEEEcC--CCCCCCCchhHHHH
Q 007645 262 -AFSFDIVHCSRCLIPFT------------------AYNATYLIEVDRLL---RPGGYLVISGP--PVQWPKQDKEWADL 317 (595)
Q Consensus 262 -d~sFDlV~~s~vL~h~~------------------~d~~~~L~Ei~RvL---RPGG~lvls~p--~~~~~~~~~~w~~l 317 (595)
-..+|+++...-=..+. +....++.++.|++ +|. +++.+. ..........+..+
T Consensus 166 ~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk--~fvlENV~gl~s~~~g~~f~~i 243 (467)
T PRK10458 166 HIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRPA--IFVLENVKNLKSHDKGKTFRII 243 (467)
T ss_pred cCCCCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCCC--EEEEeCcHhhhcccccHHHHHH
Confidence 12478887632111110 11223555665554 666 333332 22222222347777
Q ss_pred HHHHHHcCcEEE
Q 007645 318 QAVARALCYELI 329 (595)
Q Consensus 318 ~~la~~~~w~~v 329 (595)
.+.+++++|.+.
T Consensus 244 ~~~L~~lGY~v~ 255 (467)
T PRK10458 244 MQTLDELGYDVA 255 (467)
T ss_pred HHHHHHcCCeEE
Confidence 788888999875
No 472
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=60.27 E-value=37 Score=36.20 Aligned_cols=97 Identities=20% Similarity=0.191 Sum_probs=60.0
Q ss_pred ccccCCCcceEEEECC--CCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEE--Ecc-cccC--CCCCCce
Q 007645 194 IPITGGTLRTALDMGC--GVASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVA--MLG-TRRL--PFPAFSF 265 (595)
Q Consensus 194 l~~~~g~~r~VLDIGC--GtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~--~~d-~~~L--Pfpd~sF 265 (595)
.....++ +||=.|+ |.|+++..|++. |... ...-.+.+..+.+++.|....+. ..+ .+.. ......+
T Consensus 138 ~~l~~g~--~VLV~gaaGgVG~~aiQlAk~~G~~~---v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gv 212 (326)
T COG0604 138 AGLKPGE--TVLVHGAAGGVGSAAIQLAKALGATV---VAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGV 212 (326)
T ss_pred cCCCCCC--EEEEecCCchHHHHHHHHHHHcCCcE---EEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCc
Confidence 3344444 8998884 467999999987 3322 22234455555788777654333 111 1111 1223469
Q ss_pred eEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 266 DIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 266 DlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
|+|+..- -...+.+....|+++|.++..+.
T Consensus 213 Dvv~D~v--------G~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 213 DVVLDTV--------GGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred eEEEECC--------CHHHHHHHHHHhccCCEEEEEec
Confidence 9998542 24567788999999999999875
No 473
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=59.80 E-value=5.6 Score=40.83 Aligned_cols=99 Identities=15% Similarity=0.230 Sum_probs=60.3
Q ss_pred eEEecccchhHHHhhhcC--CC--eEEEEeccCCCCCchhHHhhcc------chhhhcccCCCCCC---CCCccchhhcc
Q 007645 444 NIMDMNAFFGGFAAALTS--DP--VWVMNVVPARKSSTLSVIYDRG------LIGVYHDWCEPFST---YPRTYDLIHVS 510 (595)
Q Consensus 444 nvmDm~~~~g~faa~l~~--~~--vwvmnv~p~~~~~~l~~i~eRG------lig~~~~wce~f~t---yprtyDl~H~~ 510 (595)
.++.+|||.|.-.--|+. .+ +-||.. + -+++-+.++-++- .-...+|-+.+=.- -+-+.|.|-+-
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~ac-D-fsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYAC-D-FSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEc-C-CChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence 899999999975444422 11 333321 0 1122222222211 12333444433222 23899999999
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP 551 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~ 551 (595)
-++|... .-.|...+=.+-|+|+|||.+++||--
T Consensus 152 FvLSAi~-------pek~~~a~~nl~~llKPGG~llfrDYg 185 (264)
T KOG2361|consen 152 FVLSAIH-------PEKMQSVIKNLRTLLKPGGSLLFRDYG 185 (264)
T ss_pred EEEeccC-------hHHHHHHHHHHHHHhCCCcEEEEeecc
Confidence 9999874 334778899999999999999999743
No 474
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=59.35 E-value=58 Score=32.74 Aligned_cols=91 Identities=21% Similarity=0.160 Sum_probs=54.8
Q ss_pred ceEEEECCCC-cHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCccccc
Q 007645 202 RTALDMGCGV-ASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA 279 (595)
Q Consensus 202 r~VLDIGCGt-G~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~ 279 (595)
.+||=.|+|. |..+..+++. |.. .+..++.+++..+.+++.|....+... ...+ ...+.+|+|+....
T Consensus 99 ~~vlI~g~g~vg~~~i~~a~~~g~~--~vi~~~~~~~~~~~~~~~g~~~~~~~~-~~~~-~~~~~~d~vl~~~~------ 168 (277)
T cd08255 99 ERVAVVGLGLVGLLAAQLAKAAGAR--EVVGVDPDAARRELAEALGPADPVAAD-TADE-IGGRGADVVIEASG------ 168 (277)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC--cEEEECCCHHHHHHHHHcCCCcccccc-chhh-hcCCCCCEEEEccC------
Confidence 3788888764 4555555554 432 266678888888888887721111111 0011 13356898885321
Q ss_pred CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 280 YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 280 d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
....+.+..+.|+++|.++..+.
T Consensus 169 -~~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 169 -SPSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred -ChHHHHHHHHHhcCCcEEEEEec
Confidence 13467888999999999997653
No 475
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=59.08 E-value=75 Score=32.71 Aligned_cols=89 Identities=15% Similarity=0.136 Sum_probs=56.9
Q ss_pred ceEEEECC--CCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccC-----CCCCCceeEEEEcCC
Q 007645 202 RTALDMGC--GVASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRL-----PFPAFSFDIVHCSRC 273 (595)
Q Consensus 202 r~VLDIGC--GtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~L-----Pfpd~sFDlV~~s~v 273 (595)
.+||=.|+ |.|.++..+++. |. .+...+.++...+.+++.|....+...+ ..+ ....+.+|+|+-.
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~~~G~---~vi~~~~s~~~~~~l~~~Ga~~vi~~~~-~~~~~~v~~~~~~gvd~vld~-- 218 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAKIKGC---KVIGCAGSDDKVAWLKELGFDAVFNYKT-VSLEEALKEAAPDGIDCYFDN-- 218 (329)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHcCCCEEEeCCC-ccHHHHHHHHCCCCcEEEEEC--
Confidence 47887774 466777777766 43 4556677788888888877643322111 111 1122568988843
Q ss_pred CcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 274 LIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 274 L~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
. ....+.+..+.|+++|.++..+
T Consensus 219 ~------g~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 219 V------GGEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred C------CHHHHHHHHHhhccCCEEEEEc
Confidence 1 1246788999999999998765
No 476
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=58.77 E-value=1.1e+02 Score=30.45 Aligned_cols=44 Identities=14% Similarity=0.173 Sum_probs=32.4
Q ss_pred CChhhhHHhhcccccCCcEEEEe-CChHHHHHHHHhHhccCc-eeE
Q 007645 526 CSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIANTVRW-TAA 569 (595)
Q Consensus 526 c~~~~~llEmdRiLRP~G~~i~r-d~~~~~~~~~~~~~~~~W-~~~ 569 (595)
-+++.||--...-|||||-+|.. -..+...+.-+..+.+.+ ++.
T Consensus 112 ~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~ 157 (187)
T COG2242 112 GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIV 157 (187)
T ss_pred CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEE
Confidence 67888998899999999999986 344555555555666666 443
No 477
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=58.70 E-value=81 Score=35.68 Aligned_cols=117 Identities=13% Similarity=0.130 Sum_probs=67.8
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhc---CCceEEEEeecCcHHHHHHHHHc----CCC---eEEEEcccc
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE---NILTLSFAPRDSHKAQIQFALER----GIP---AFVAMLGTR 256 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~---gv~~~~v~~vD~s~~~l~~A~er----g~~---~~~~~~d~~ 256 (595)
++.+.+.+.........+.|.-||+|.+....... +-....+.+.+....+...|..+ +.. ......+..
T Consensus 204 v~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl 283 (501)
T TIGR00497 204 SELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTL 283 (501)
T ss_pred HHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcC
Confidence 44444444322222347999999999988654331 22335688889998888877754 322 122222322
Q ss_pred cC-CC-CCCceeEEEEcCCCcc-c-----------------------ccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 257 RL-PF-PAFSFDIVHCSRCLIP-F-----------------------TAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 257 ~L-Pf-pd~sFDlV~~s~vL~h-~-----------------------~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.- .+ ....||.|+++--+.. | ....-.++..+..+|++||...++-|
T Consensus 284 ~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~ 356 (501)
T TIGR00497 284 TTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCF 356 (501)
T ss_pred CCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEec
Confidence 21 12 2356888887542211 1 11223678888899999999887766
No 478
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=58.66 E-value=9.1 Score=39.95 Aligned_cols=45 Identities=9% Similarity=0.369 Sum_probs=36.1
Q ss_pred ChhhhHHhhcccccCCcEEEE--------eCC-------hH-HHHHHHHhHhccCceeEEe
Q 007645 527 SLVDLMVEMDRMLRPEGTVVV--------RDS-------PE-VIDKVSRIANTVRWTAAVH 571 (595)
Q Consensus 527 ~~~~~llEmdRiLRP~G~~i~--------rd~-------~~-~~~~~~~~~~~~~W~~~~~ 571 (595)
++.++|-.|-++|+|||++|= .+. .+ -+++|+.+++.+-|+....
T Consensus 180 Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~ 240 (270)
T PF07942_consen 180 NIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKE 240 (270)
T ss_pred HHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEE
Confidence 355889999999999998883 233 22 2899999999999998765
No 479
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=58.65 E-value=41 Score=34.40 Aligned_cols=124 Identities=19% Similarity=0.189 Sum_probs=74.6
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCCC-eEEEEeccCC-CCCchhHHhhccchh--hhcccCCCCCCCCCccchhhccCc
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPAR-KSSTLSVIYDRGLIG--VYHDWCEPFSTYPRTYDLIHVSGI 512 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~~-vwvmnv~p~~-~~~~l~~i~eRGlig--~~~~wce~f~typrtyDl~H~~~~ 512 (595)
+..+.=+-|||+|||.|==++.|.+.- +|+ =.| ++.-|.++.||-+=| ++.|.-|.++.=|-|||-+-.-+-
T Consensus 46 lp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wi----GvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISA 121 (270)
T KOG1541|consen 46 LPGPKSGLILDIGCGSGLSGSVLSDSGHQWI----GVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISA 121 (270)
T ss_pred CCCCCCcEEEEeccCCCcchheeccCCceEE----eecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeee
Confidence 566677899999999998887776665 343 233 347788888855433 456777999998999996432211
Q ss_pred cccccCCCCCCCCCChh-----hhHHhhcccccCCcEEEEeCChHHHHHHHHhHhccCce
Q 007645 513 ESLIKNPGSNKNSCSLV-----DLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWT 567 (595)
Q Consensus 513 ~s~~~~~~~~~~~c~~~-----~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~~~~~W~ 567 (595)
. .|- -.-...|... ..+=-+-..|.+|+-.+++=.++..+.++.|...-.|.
T Consensus 122 v-QWL--cnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~a 178 (270)
T KOG1541|consen 122 V-QWL--CNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKA 178 (270)
T ss_pred e-eee--cccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhh
Confidence 1 121 0000112211 22334668899999999984444444444444444443
No 480
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=57.67 E-value=58 Score=34.25 Aligned_cols=93 Identities=12% Similarity=0.131 Sum_probs=54.3
Q ss_pred ceEEEECCCC-cHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEccc--ccC--CCCCCcee-EEEEcCCC
Q 007645 202 RTALDMGCGV-ASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGT--RRL--PFPAFSFD-IVHCSRCL 274 (595)
Q Consensus 202 r~VLDIGCGt-G~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~--~~L--Pfpd~sFD-lV~~s~vL 274 (595)
.+||=.|+|. |..+..+++. |.. .+..++.++...+.+++.|....+...+. ..+ -.....+| +|+-. .
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~G~~--~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~--~ 237 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVALGAK--SVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILET--A 237 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC--eEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEEC--C
Confidence 4888888753 4455555554 432 24566888888888877775322211110 000 01233577 55522 1
Q ss_pred cccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 275 IPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 275 ~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
-....+.+..+.|++||.+++.+.
T Consensus 238 -----G~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 238 -----GVPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred -----CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 113478889999999999999874
No 481
>PLN02827 Alcohol dehydrogenase-like
Probab=57.18 E-value=74 Score=34.27 Aligned_cols=93 Identities=13% Similarity=0.040 Sum_probs=55.6
Q ss_pred ceEEEECCC-CcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEccc-cc----C-CCCCCceeEEEEcCC
Q 007645 202 RTALDMGCG-VASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGT-RR----L-PFPAFSFDIVHCSRC 273 (595)
Q Consensus 202 r~VLDIGCG-tG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~-~~----L-Pfpd~sFDlV~~s~v 273 (595)
.+||=.|+| .|.++..+++. |.. .+..+|.++...+.|++.|....+...+. .. + ....+.+|+|+-.-.
T Consensus 195 ~~VlV~G~G~vG~~~iqlak~~G~~--~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G 272 (378)
T PLN02827 195 SSVVIFGLGTVGLSVAQGAKLRGAS--QIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFECVG 272 (378)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC--eEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEECCC
Confidence 488888875 34555555554 432 35567888888999988876433221110 00 0 011235898874321
Q ss_pred CcccccCHHHHHHHHHhhcCCC-cEEEEEcC
Q 007645 274 LIPFTAYNATYLIEVDRLLRPG-GYLVISGP 303 (595)
Q Consensus 274 L~h~~~d~~~~L~Ei~RvLRPG-G~lvls~p 303 (595)
....+.+..+.||+| |.+++.+.
T Consensus 273 -------~~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 273 -------DTGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred -------ChHHHHHHHHhhccCCCEEEEECC
Confidence 123577888899998 99998764
No 482
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=57.04 E-value=22 Score=38.87 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=29.5
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHH
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFAL 242 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~ 242 (595)
+..|.|+|.|.|.++..|.-. ...+|.++|.|....+.|+
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~--y~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLG--YGLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhc--cCceEEEeccchHHHHHHH
Confidence 458999999999999887654 2346777788866655543
No 483
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=56.98 E-value=59 Score=34.79 Aligned_cols=93 Identities=14% Similarity=0.026 Sum_probs=56.5
Q ss_pred ceEEEECCC-CcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEccc-----ccC-CCCCCceeEEEEcCC
Q 007645 202 RTALDMGCG-VASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGT-----RRL-PFPAFSFDIVHCSRC 273 (595)
Q Consensus 202 r~VLDIGCG-tG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~-----~~L-Pfpd~sFDlV~~s~v 273 (595)
.+||=+|+| .|..+..+++. |. ..+..+|.++...+.+++.|....+...+. +.+ ....+.+|+|+-.-.
T Consensus 187 ~~VlV~G~G~iG~~a~q~Ak~~G~--~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G 264 (368)
T TIGR02818 187 DTVAVFGLGGIGLSVIQGARMAKA--SRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECIG 264 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECCC
Confidence 388888886 35555666654 33 145667889999999988886433321110 000 011235888874311
Q ss_pred CcccccCHHHHHHHHHhhcCCC-cEEEEEcC
Q 007645 274 LIPFTAYNATYLIEVDRLLRPG-GYLVISGP 303 (595)
Q Consensus 274 L~h~~~d~~~~L~Ei~RvLRPG-G~lvls~p 303 (595)
. ...+.+..+.|++| |.+++.+.
T Consensus 265 ------~-~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 265 ------N-VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred ------C-HHHHHHHHHHhhcCCCeEEEEec
Confidence 1 34677888899996 99988763
No 484
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=56.73 E-value=83 Score=36.81 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=39.3
Q ss_pred CceeEEEEcCCCcccccCH----HHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 263 FSFDIVHCSRCLIPFTAYN----ATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~d~----~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
..||+++.-. |.+-. ++ ..++.++.|+++|||.|.-.+. =..+++-+...||++...
T Consensus 165 ~~~d~~~lD~-FsP~~-np~~W~~~~~~~l~~~~~~~~~~~t~t~----------a~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 165 ARADAWFLDG-FAPAK-NPDMWSPNLFNALARLARPGATLATFTS----------AGFVRRGLQEAGFTVRKV 225 (662)
T ss_pred ccccEEEeCC-CCCcc-ChhhccHHHHHHHHHHhCCCCEEEEeeh----------HHHHHHHHHHcCCeeeec
Confidence 5699998642 32311 33 4899999999999999986432 124667777888877644
No 485
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=56.50 E-value=73 Score=33.64 Aligned_cols=93 Identities=14% Similarity=0.080 Sum_probs=55.2
Q ss_pred cceEEEECCCC-cHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEccc--ccC----C--CCCCcee----
Q 007645 201 LRTALDMGCGV-ASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGT--RRL----P--FPAFSFD---- 266 (595)
Q Consensus 201 ~r~VLDIGCGt-G~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~--~~L----P--fpd~sFD---- 266 (595)
..+||=+|+|. |..+..+++. |. .+..+|.++..++++++.|....+...+. ..+ . .....+|
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~~G~---~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d 243 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAMGA---AVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGW 243 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---eEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcC
Confidence 34899999864 5565666655 43 45667888999999988776432221110 000 0 1112344
Q ss_pred EEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 267 IVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 267 lV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.|+-. . -....+..+.++|++||++++.+.
T Consensus 244 ~v~d~--~-----g~~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 244 KIFEC--S-----GSKPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred EEEEC--C-----CChHHHHHHHHHHhcCCeEEEECc
Confidence 44421 1 113466778889999999999874
No 486
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=56.09 E-value=27 Score=30.52 Aligned_cols=78 Identities=17% Similarity=0.051 Sum_probs=49.3
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccCHH
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNA 282 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~~ 282 (595)
+|| +-||+|..+..+++ .+.+.+.++|++..+...+..+++-....+|+|+... ...
T Consensus 5 ~IL-l~C~~G~sSS~l~~---------------k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~p-------qi~ 61 (95)
T TIGR00853 5 NIL-LLCAAGMSTSLLVN---------------KMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAP-------QVA 61 (95)
T ss_pred EEE-EECCCchhHHHHHH---------------HHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECc-------hHH
Confidence 455 66898866655543 2456788899998887776655543335689998763 234
Q ss_pred HHHHHHHhhcCCCcEEEEEcC
Q 007645 283 TYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 283 ~~L~Ei~RvLRPGG~lvls~p 303 (595)
..+.++...+.+-|.=+...+
T Consensus 62 ~~~~~i~~~~~~~~ipv~~I~ 82 (95)
T TIGR00853 62 YMLPDLKKETDKKGIPVEVIN 82 (95)
T ss_pred HHHHHHHHHhhhcCCCEEEeC
Confidence 456677777665444444433
No 487
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=55.81 E-value=52 Score=35.18 Aligned_cols=92 Identities=13% Similarity=0.097 Sum_probs=50.0
Q ss_pred ceEEEECCC-CcHHHHHHhhc-CCceEEEEeecCcHHH-HHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccc
Q 007645 202 RTALDMGCG-VASFGGSMLSE-NILTLSFAPRDSHKAQ-IQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT 278 (595)
Q Consensus 202 r~VLDIGCG-tG~~a~~La~~-gv~~~~v~~vD~s~~~-l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~ 278 (595)
.+||=.|+| .|.++..+++. |. .+..++.+... .+.+++.|....+...+...+.-..+.+|+|+-.-.
T Consensus 185 ~~VlV~G~G~vG~~avq~Ak~~Ga---~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g----- 256 (360)
T PLN02586 185 KHLGVAGLGGLGHVAVKIGKAFGL---KVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVS----- 256 (360)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCC-----
Confidence 378878886 35666666655 43 33334444433 345556665322211111111000124788874321
Q ss_pred cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 279 AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 279 ~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
....+.+..+.|++||.++..+.
T Consensus 257 --~~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 257 --AVHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred --CHHHHHHHHHHhcCCcEEEEeCC
Confidence 12367788999999999998764
No 488
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=55.63 E-value=87 Score=32.77 Aligned_cols=90 Identities=12% Similarity=0.089 Sum_probs=56.2
Q ss_pred ceEEEECC--CCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHH-cCCCeEEEEcccccC-----CCCCCceeEEEEcC
Q 007645 202 RTALDMGC--GVASFGGSMLSE-NILTLSFAPRDSHKAQIQFALE-RGIPAFVAMLGTRRL-----PFPAFSFDIVHCSR 272 (595)
Q Consensus 202 r~VLDIGC--GtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~e-rg~~~~~~~~d~~~L-----Pfpd~sFDlV~~s~ 272 (595)
.+||=.|+ |.|.++..+++. |. .+...+.++...+.+++ .|....+...+...+ ....+.+|+|+-.
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~G~---~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~- 228 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLKGC---YVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDN- 228 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEEC-
Confidence 48888886 467777777766 44 45555667777888877 665432221110010 0112568988743
Q ss_pred CCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 273 CLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 273 vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
. . ...+.+..+.|+++|.++..+
T Consensus 229 -~-----g-~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 229 -V-----G-GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred -C-----C-HHHHHHHHHHhccCcEEEEec
Confidence 1 1 246788999999999999865
No 489
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=55.46 E-value=19 Score=34.88 Aligned_cols=52 Identities=27% Similarity=0.424 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcC-cEEEEeecceeEeecc
Q 007645 281 NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALC-YELIAVDGNTVIWKKP 341 (595)
Q Consensus 281 ~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~-w~~v~~~~~~~iw~K~ 341 (595)
....+.++.|+|||||.+++......... .....+.+..+ |... +..+|.|+
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~~~~~~-----~~~~~~~~~~g~~~~~----~~iiW~K~ 87 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDDREIAG-----FLFELALEIFGGFFLR----NEIIWNKP 87 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-CCEECT-----HHHHHHHHHHTT-EEE----EEEEEE-S
T ss_pred HHHHHHHHHhhcCCCeeEEEEecchhhhH-----HHHHHHHHHhhhhhee----ccceeEec
Confidence 45789999999999999999765221111 12333444445 6554 46789887
No 490
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=55.36 E-value=16 Score=32.38 Aligned_cols=75 Identities=20% Similarity=0.132 Sum_probs=53.0
Q ss_pred ECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccCHHHHHH
Q 007645 207 MGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLI 286 (595)
Q Consensus 207 IGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~ 286 (595)
+-||.|..+..+++ .+-+.++++|+++.+.......++-....+|+|+..- .....+.
T Consensus 5 l~C~~GaSSs~la~---------------km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~P-------Qv~~~~~ 62 (99)
T cd05565 5 VLCAGGGTSGLLAN---------------ALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAP-------QMASYYD 62 (99)
T ss_pred EECCCCCCHHHHHH---------------HHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcC-------hHHHHHH
Confidence 56788855555544 3567888999998888777666654456789888653 3456678
Q ss_pred HHHhhcCCCcEEEEEcC
Q 007645 287 EVDRLLRPGGYLVISGP 303 (595)
Q Consensus 287 Ei~RvLRPGG~lvls~p 303 (595)
++...+.+-|.-+...+
T Consensus 63 ~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 63 ELKKDTDRLGIKLVTTT 79 (99)
T ss_pred HHHHHhhhcCCCEEEeC
Confidence 88888888887666554
No 491
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=55.26 E-value=5.2 Score=42.10 Aligned_cols=46 Identities=15% Similarity=0.353 Sum_probs=36.7
Q ss_pred CCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCChHH
Q 007645 501 PRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEV 553 (595)
Q Consensus 501 prtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~~ 553 (595)
+..||+|-|-.+|..+. .-.-..++-.+-+.|+|||++++-....+
T Consensus 221 ~~~fD~I~cRNvliyF~-------~~~~~~vl~~l~~~L~pgG~L~lG~sEsl 266 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFD-------KTTQERILRRFVPLLKPDGLLFAGHSENF 266 (287)
T ss_pred CCCcceeeHhhHHhcCC-------HHHHHHHHHHHHHHhCCCcEEEEeCcccc
Confidence 37899999999998663 33445799999999999999999765543
No 492
>PTZ00357 methyltransferase; Provisional
Probab=55.08 E-value=80 Score=37.36 Aligned_cols=93 Identities=17% Similarity=0.191 Sum_probs=57.9
Q ss_pred eEEEECCCCcHHHHHHhhc----CCceEEEEeecCcHHHHHHHHHc--------------CCCeEEEEcccccCCCCC--
Q 007645 203 TALDMGCGVASFGGSMLSE----NILTLSFAPRDSHKAQIQFALER--------------GIPAFVAMLGTRRLPFPA-- 262 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~----gv~~~~v~~vD~s~~~l~~A~er--------------g~~~~~~~~d~~~LPfpd-- 262 (595)
.|+-+|+|-|-+....++. ++ -+.+..++-++....+.+.+ |-.+.++..|+..+..+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gv-kVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGV-RLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCC-cEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 5899999999665554433 54 45788888885433233222 223677888877764321
Q ss_pred ---------CceeEEEEcCCCcccccCH--HHHHHHHHhhcCC----CcE
Q 007645 263 ---------FSFDIVHCSRCLIPFTAYN--ATYLIEVDRLLRP----GGY 297 (595)
Q Consensus 263 ---------~sFDlV~~s~vL~h~~~d~--~~~L~Ei~RvLRP----GG~ 297 (595)
+.+|+|++- .|..+.++. ..-|..+.+.||+ +|.
T Consensus 782 ~s~~~P~~~gKaDIVVSE-LLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSE-LLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHh-hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 369999973 233443222 3678888888876 775
No 493
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=54.40 E-value=89 Score=32.59 Aligned_cols=90 Identities=11% Similarity=0.069 Sum_probs=55.6
Q ss_pred ceEEEECC--CCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHH-cCCCeEEEEcccccC-----CCCCCceeEEEEcC
Q 007645 202 RTALDMGC--GVASFGGSMLSE-NILTLSFAPRDSHKAQIQFALE-RGIPAFVAMLGTRRL-----PFPAFSFDIVHCSR 272 (595)
Q Consensus 202 r~VLDIGC--GtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~e-rg~~~~~~~~d~~~L-----Pfpd~sFDlV~~s~ 272 (595)
.+||=.|+ |.|..+..+++. |.. .+..++.+++..+.+++ .|....+...+ ..+ ....+.+|+|+..-
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~--~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~-~~~~~~i~~~~~~gvd~vid~~ 232 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCS--RVVGICGSDEKCQLLKSELGFDAAINYKT-DNVAERLRELCPEGVDVYFDNV 232 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHhcCCcEEEECCC-CCHHHHHHHHCCCCceEEEECC
Confidence 48888886 467777777775 431 45556777777777765 56543222111 111 01125699998532
Q ss_pred CCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 273 CLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 273 vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
. ...+.+..+.|+++|.++..+
T Consensus 233 g--------~~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 233 G--------GEISDTVISQMNENSHIILCG 254 (345)
T ss_pred C--------cHHHHHHHHHhccCCEEEEEe
Confidence 1 123578889999999999865
No 494
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=54.28 E-value=27 Score=36.92 Aligned_cols=127 Identities=13% Similarity=0.175 Sum_probs=67.0
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHh----hccchhhhcccCCCCCCC----CCccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIY----DRGLIGVYHDWCEPFSTY----PRTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~----eRGlig~~~~wce~f~ty----prtyDl~H~~~~~ 513 (595)
..|+|++||.|.|+..|.+.. ..|+-.|.. ..+..+- +.|+ .-.+=.|.....+ ...||+|-.+
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~d--- 247 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVN--- 247 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEEC---
Confidence 579999999999999998753 355555543 4444332 2233 1111111111111 2468887643
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCChHHHH-HHHHhHhccCceeEE---eccCCCCCCCceEEEEEe
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVID-KVSRIANTVRWTAAV---HDKEPGSNGREKILVATK 588 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~~~~-~~~~~~~~~~W~~~~---~~~~~~~~~~~~~l~~~K 588 (595)
| .|-.+...++++=.-++|++.++++-++..+. .++.+ . -|++.. .|.=+....=|-+.+.+|
T Consensus 248 -----P----Pr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-~--~y~~~~~~~~DmFP~T~HvE~v~~l~r 314 (315)
T PRK03522 248 -----P----PRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-P--GYRIERVQLFDMFPHTAHYEVLTLLVR 314 (315)
T ss_pred -----C----CCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-c--CcEEEEEEEeccCCCCCeEEEEEEEEc
Confidence 1 23333333333333378999999986665543 34444 3 365433 344444444465655544
No 495
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=52.98 E-value=95 Score=33.09 Aligned_cols=93 Identities=16% Similarity=0.047 Sum_probs=56.1
Q ss_pred ceEEEECCC-CcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccc-cC-----CCCCCceeEEEEcCC
Q 007645 202 RTALDMGCG-VASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTR-RL-----PFPAFSFDIVHCSRC 273 (595)
Q Consensus 202 r~VLDIGCG-tG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~-~L-----Pfpd~sFDlV~~s~v 273 (595)
.+||=+|+| .|.++..+++. |. ..+..+|.++..++.+++.|....+...+.. .+ ....+.+|+|+-.-
T Consensus 188 ~~VlV~G~G~vG~~a~~~ak~~G~--~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~- 264 (368)
T cd08300 188 STVAVFGLGAVGLAVIQGAKAAGA--SRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFECI- 264 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEECC-
Confidence 388888875 34555555554 33 1466678888899998887764333211110 00 01223689887431
Q ss_pred CcccccCHHHHHHHHHhhcCCC-cEEEEEcC
Q 007645 274 LIPFTAYNATYLIEVDRLLRPG-GYLVISGP 303 (595)
Q Consensus 274 L~h~~~d~~~~L~Ei~RvLRPG-G~lvls~p 303 (595)
.....+.+..+.|+++ |.+++.+.
T Consensus 265 ------g~~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 265 ------GNVKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred ------CChHHHHHHHHhhccCCCeEEEEcc
Confidence 1134678888999997 99998763
No 496
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=52.61 E-value=97 Score=32.23 Aligned_cols=92 Identities=22% Similarity=0.191 Sum_probs=55.5
Q ss_pred ceEEEECCCC-cHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEccc---ccC--CCCCCceeEEEEcCCC
Q 007645 202 RTALDMGCGV-ASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGT---RRL--PFPAFSFDIVHCSRCL 274 (595)
Q Consensus 202 r~VLDIGCGt-G~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~---~~L--Pfpd~sFDlV~~s~vL 274 (595)
.+||-.|+|. |..+..+++. |. .+..+..+++..+.+++.+....+...+. +.+ -.+...+|+++....
T Consensus 161 ~~vLI~g~g~vG~~a~~lA~~~g~---~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~g- 236 (337)
T cd08261 161 DTVLVVGAGPIGLGVIQVAKARGA---RVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDATG- 236 (337)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC---eEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEECCC-
Confidence 3888888763 6666677765 44 34445556777777776664322211110 011 023356899985421
Q ss_pred cccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 275 IPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 275 ~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
....+.++.+.|+++|.++..+.
T Consensus 237 ------~~~~~~~~~~~l~~~G~~i~~g~ 259 (337)
T cd08261 237 ------NPASMEEAVELVAHGGRVVLVGL 259 (337)
T ss_pred ------CHHHHHHHHHHHhcCCEEEEEcC
Confidence 13467888999999999987653
No 497
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=52.59 E-value=11 Score=37.90 Aligned_cols=98 Identities=22% Similarity=0.284 Sum_probs=52.5
Q ss_pred HHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCCCchhHHhhc-----cchhhhcccC-CCCCCC
Q 007645 427 AYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDR-----GLIGVYHDWC-EPFSTY 500 (595)
Q Consensus 427 ~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~~~l~~i~eR-----Glig~~~~wc-e~f~ty 500 (595)
......|. ++.+ -.||++|||.|=-||-| .+=+ =.|+-.+--.+|.-...+ |+-. .+--| ...--|
T Consensus 62 A~m~~~L~--~~~g--~~VLEIGtGsGY~aAvl-a~l~--~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G~ 133 (209)
T COG2518 62 ARMLQLLE--LKPG--DRVLEIGTGSGYQAAVL-ARLV--GRVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKGW 133 (209)
T ss_pred HHHHHHhC--CCCC--CeEEEECCCchHHHHHH-HHHh--CeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccCC
Confidence 44444444 4444 78999999998444444 3211 133333333444433322 3322 11111 222236
Q ss_pred C--CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEE
Q 007645 501 P--RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 501 p--rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
| ..||-|+.+..... +..-|+| =|+|||-.|+
T Consensus 134 ~~~aPyD~I~Vtaaa~~------------vP~~Ll~---QL~~gGrlv~ 167 (209)
T COG2518 134 PEEAPYDRIIVTAAAPE------------VPEALLD---QLKPGGRLVI 167 (209)
T ss_pred CCCCCcCEEEEeeccCC------------CCHHHHH---hcccCCEEEE
Confidence 6 68999996665553 2345554 5899998887
No 498
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.39 E-value=68 Score=30.86 Aligned_cols=76 Identities=5% Similarity=0.013 Sum_probs=45.5
Q ss_pred HHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C--CCeEEEEcccccCCCCCC
Q 007645 190 LKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G--IPAFVAMLGTRRLPFPAF 263 (595)
Q Consensus 190 L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g--~~~~~~~~d~~~LPfpd~ 263 (595)
+..++...+ ..+.+|+|.|.|..-...++.+. ..-+++++++-.+..++-+ | -...|..-|+......+-
T Consensus 64 VLSll~~n~--~GklvDlGSGDGRiVlaaar~g~--~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy 139 (199)
T KOG4058|consen 64 VLSLLRGNP--KGKLVDLGSGDGRIVLAAARCGL--RPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY 139 (199)
T ss_pred HHHHccCCC--CCcEEeccCCCceeehhhhhhCC--CcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence 344444333 23799999999998887777762 2456778888888776644 2 234455445544444433
Q ss_pred ceeEEE
Q 007645 264 SFDIVH 269 (595)
Q Consensus 264 sFDlV~ 269 (595)
.+-+|+
T Consensus 140 ~~vviF 145 (199)
T KOG4058|consen 140 RNVVIF 145 (199)
T ss_pred ceEEEe
Confidence 333333
No 499
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=52.25 E-value=12 Score=37.79 Aligned_cols=142 Identities=14% Similarity=0.192 Sum_probs=78.2
Q ss_pred HHHHHHhhhccCCCCeeeEEecccchhHHHhhh----cCC-CeEEEEeccCCCCCchhHHhhccch----hhh-cccCCC
Q 007645 427 AYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAAL----TSD-PVWVMNVVPARKSSTLSVIYDRGLI----GVY-HDWCEP 496 (595)
Q Consensus 427 ~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l----~~~-~vwvmnv~p~~~~~~l~~i~eRGli----g~~-~~wce~ 496 (595)
..|..+|. ....-++||.+|.+.|==|..| -++ .+.+.=+-|......-...-+=|+- -.. .|+-+.
T Consensus 48 g~~L~~L~---~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 48 GALLRLLA---RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred HHHHHHHH---HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 45665543 3346789999999876322222 211 1333222222111122233333421 111 477777
Q ss_pred CCC-CCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe--------------CChHHHHHHHHhH
Q 007645 497 FST-YPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR--------------DSPEVIDKVSRIA 561 (595)
Q Consensus 497 f~t-yprtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r--------------d~~~~~~~~~~~~ 561 (595)
++- ..-+||||=.+ ..+-.....+=+.=++|||||.+|+- +......+++...
T Consensus 125 l~~~~~~~fDliFID------------adK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~ 192 (219)
T COG4122 125 LSRLLDGSFDLVFID------------ADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFN 192 (219)
T ss_pred HHhccCCCccEEEEe------------CChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHH
Confidence 773 66899998633 34455556676777789999999974 2224455556655
Q ss_pred hccCc----eeEEeccCCCCCCCceEEEEEec
Q 007645 562 NTVRW----TAAVHDKEPGSNGREKILVATKS 589 (595)
Q Consensus 562 ~~~~W----~~~~~~~~~~~~~~~~~l~~~K~ 589 (595)
.-+.+ +.... | ..+.++|+.|.
T Consensus 193 ~~~~~~~~~~t~~l-----P-~gDGl~v~~k~ 218 (219)
T COG4122 193 DYLLEDPRYDTVLL-----P-LGDGLLLSRKR 218 (219)
T ss_pred HHHhhCcCceeEEE-----e-cCCceEEEeec
Confidence 55544 44443 2 23788998885
No 500
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=51.92 E-value=1.1e+02 Score=31.42 Aligned_cols=87 Identities=18% Similarity=0.203 Sum_probs=52.7
Q ss_pred ceEEEECCC-CcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCccccc
Q 007645 202 RTALDMGCG-VASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA 279 (595)
Q Consensus 202 r~VLDIGCG-tG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~ 279 (595)
.+||=.|+| .|..+..+++. |. .+..++.++...+.+++.|....+.. ... ...+.+|+++...
T Consensus 157 ~~vlV~g~g~vg~~~~q~a~~~G~---~vi~~~~~~~~~~~~~~~g~~~~~~~---~~~-~~~~~~d~vid~~------- 222 (319)
T cd08242 157 DKVAVLGDGKLGLLIAQVLALTGP---DVVLVGRHSEKLALARRLGVETVLPD---EAE-SEGGGFDVVVEAT------- 222 (319)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC---eEEEEcCCHHHHHHHHHcCCcEEeCc---ccc-ccCCCCCEEEECC-------
Confidence 478877754 23333344443 44 35556777888888888665432211 111 2445689988531
Q ss_pred CHHHHHHHHHhhcCCCcEEEEEc
Q 007645 280 YNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 280 d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.....+..+.+.|+++|.++...
T Consensus 223 g~~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 223 GSPSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred CChHHHHHHHHHhhcCCEEEEEc
Confidence 11346778889999999999744
Done!