Your job contains 1 sequence.
>007648
MAISKELYPSEDDLLYEEELLRNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSY
KLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITK
ARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFL
VKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMV
SAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLA
RLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVG
KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGA
LELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER
ILDLRIATPQIIINYALLLEVWTLLHVFLLHVPFTFSGLCMFTFFFTVSCCTGA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007648
(594 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2184236 - symbol:AT5G28740 species:3702 "Arabi... 2313 9.6e-242 2
ZFIN|ZDB-GENE-040426-685 - symbol:xab2 "XPA binding prote... 848 1.9e-155 2
MGI|MGI:1914689 - symbol:Xab2 "XPA binding protein 2" spe... 827 4.5e-152 2
RGD|621217 - symbol:Xab2 "XPA binding protein 2" species:... 827 4.5e-152 2
UNIPROTKB|F5H315 - symbol:XAB2 "Pre-mRNA-splicing factor ... 827 5.7e-152 2
UNIPROTKB|Q9HCS7 - symbol:XAB2 "Pre-mRNA-splicing factor ... 827 5.7e-152 2
UNIPROTKB|F6RY07 - symbol:XAB2 "Uncharacterized protein" ... 827 9.3e-152 2
UNIPROTKB|F1SCH5 - symbol:XAB2 "Uncharacterized protein" ... 827 9.3e-152 2
UNIPROTKB|E2RPV4 - symbol:XAB2 "Uncharacterized protein" ... 827 1.5e-151 2
UNIPROTKB|J9PAI6 - symbol:XAB2 "Uncharacterized protein" ... 827 1.5e-151 2
FB|FBgn0033859 - symbol:CG6197 species:7227 "Drosophila m... 798 1.1e-144 2
DICTYBASE|DDB_G0277977 - symbol:xab2 "TPR-like helical do... 791 1.8e-131 2
WB|WBGene00016837 - symbol:C50F2.3 species:6239 "Caenorha... 737 6.6e-79 2
UNIPROTKB|P91175 - symbol:C50F2.3 "Protein C50F2.3" speci... 737 6.6e-79 2
POMBASE|SPBC211.02c - symbol:cwf3 "complexed with Cdc5 pr... 692 9.7e-72 2
ASPGD|ASPL0000052140 - symbol:AN0111 species:162425 "Emer... 633 3.3e-65 2
GENEDB_PFALCIPARUM|PFL1735c - symbol:PFL1735c "hypothetic... 273 3.1e-33 3
UNIPROTKB|Q8I564 - symbol:PFL1735c "RNA-processing protei... 273 3.1e-33 3
CGD|CAL0005248 - symbol:orf19.2893 species:5476 "Candida ... 284 1.6e-32 2
UNIPROTKB|Q5A1C6 - symbol:SYF1 "Putative uncharacterized ... 284 1.6e-32 2
SGD|S000002824 - symbol:SYF1 "Member of the NineTeen Comp... 246 3.2e-25 3
TAIR|locus:2161363 - symbol:AT5G45990 species:3702 "Arabi... 129 4.2e-13 2
POMBASE|SPBC31F10.11c - symbol:cwf4 "complexed with Cdc5 ... 154 1.0e-12 2
UNIPROTKB|Q5JY65 - symbol:CRNKL1 "Crooked neck-like prote... 122 2.8e-11 2
UNIPROTKB|Q9BZJ0 - symbol:CRNKL1 "Crooked neck-like prote... 122 2.9e-11 2
MGI|MGI:1914127 - symbol:Crnkl1 "Crn, crooked neck-like 1... 121 5.8e-11 2
RGD|620507 - symbol:Crnkl1 "crooked neck pre-mRNA splicin... 121 5.8e-11 2
UNIPROTKB|F1P3Q8 - symbol:CRNKL1 "Uncharacterized protein... 124 7.4e-11 2
UNIPROTKB|J9P5Z1 - symbol:CRNKL1 "Uncharacterized protein... 116 2.3e-10 2
ZFIN|ZDB-GENE-040426-694 - symbol:crnkl1 "crooked neck pr... 120 6.2e-10 2
ASPGD|ASPL0000053069 - symbol:AN1259 species:162425 "Emer... 136 1.3e-09 2
SGD|S000004107 - symbol:CLF1 "Member of the NineTeen Comp... 127 3.0e-09 2
UNIPROTKB|F1MZT2 - symbol:CRNKL1 "Uncharacterized protein... 115 4.8e-09 2
TAIR|locus:2152965 - symbol:AT5G41770 species:3702 "Arabi... 120 9.1e-09 2
UNIPROTKB|F1PYE9 - symbol:CRNKL1 "Uncharacterized protein... 121 1.2e-08 2
WB|WBGene00019762 - symbol:M03F8.3 species:6239 "Caenorha... 134 4.7e-08 2
DICTYBASE|DDB_G0278819 - symbol:DDB_G0278819 "HAT repeat-... 128 5.5e-08 2
CGD|CAL0004743 - symbol:orf19.332 species:5476 "Candida a... 111 1.3e-07 2
FB|FBgn0000377 - symbol:crn "crooked neck" species:7227 "... 112 2.1e-07 2
TAIR|locus:2089999 - symbol:AT3G13210 species:3702 "Arabi... 97 3.8e-07 3
TAIR|locus:2080853 - symbol:AT3G51110 species:3702 "Arabi... 101 1.7e-06 2
RGD|1308702 - symbol:Prpf39 "PRP39 pre-mRNA processing fa... 110 0.00035 2
UNIPROTKB|A7MB10 - symbol:PDCD11 "Protein RRP5 homolog" s... 111 0.00070 2
UNIPROTKB|G5E5C4 - symbol:PDCD11 "Protein RRP5 homolog" s... 111 0.00070 2
ZFIN|ZDB-GENE-030616-420 - symbol:prpf39 "PRP39 pre-mRNA ... 94 0.00072 2
GENEDB_PFALCIPARUM|PFD0180c - symbol:PFD0180c "CGI-201 pr... 95 0.00098 2
UNIPROTKB|Q8I1Z2 - symbol:PFD0180c "CGI-201 protein, shor... 95 0.00098 2
>TAIR|locus:2184236 [details] [associations]
symbol:AT5G28740 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
PROSITE:PS50293 SMART:SM00386 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 EMBL:AF262041 eggNOG:NOG289100 KO:K12867
HOGENOM:HOG000176133 OMA:RRYLMYD IPI:IPI00544799 RefSeq:NP_198226.1
UniGene:At.47571 ProteinModelPortal:Q9LKU3 SMR:Q9LKU3 IntAct:Q9LKU3
STRING:Q9LKU3 PaxDb:Q9LKU3 PRIDE:Q9LKU3 EnsemblPlants:AT5G28740.1
GeneID:832986 KEGG:ath:AT5G28740 TAIR:At5g28740 InParanoid:Q9LKU3
PhylomeDB:Q9LKU3 ProtClustDB:CLSN2687354 Genevestigator:Q9LKU3
Uniprot:Q9LKU3
Length = 917
Score = 2313 (819.3 bits), Expect = 9.6e-242, Sum P(2) = 9.6e-242
Identities = 443/560 (79%), Positives = 480/560 (85%)
Query: 1 MAISKXXXXXXXXXXXXXXXXRNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSY 60
MAISK RN FSLKLWWRYL+AK E+PFKKRF+IYERALKALPGSY
Sbjct: 1 MAISKDLYPSQEDLLYEEELLRNQFSLKLWWRYLIAKAESPFKKRFIIYERALKALPGSY 60
Query: 61 KLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITK 120
KLW+AYL ERL IV+NLP+THP+Y++LNNTFER LVTMHKMPRIW+MYL+TLT Q+ IT+
Sbjct: 61 KLWYAYLRERLDIVRNLPVTHPQYDSLNNTFERGLVTMHKMPRIWVMYLQTLTVQQLITR 120
Query: 121 ARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFL 180
RRTFDRALCALPVTQHDRIWE YL FV Q GIPIETSLRVYRRYL YDPSHIE+FIEFL
Sbjct: 121 TRRTFDRALCALPVTQHDRIWEPYLVFVSQNGIPIETSLRVYRRYLMYDPSHIEEFIEFL 180
Query: 181 VKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGG 240
VKS+ WQE+AERLASVLNDD+FYSIKGKTKH+LWLELC+LL HA ISGLNVDAIIRGG
Sbjct: 181 VKSERWQESAERLASVLNDDKFYSIKGKTKHKLWLELCELLVHHANVISGLNVDAIIRGG 240
Query: 241 IRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMV 300
IRKFTDEVG LWTSLADYYIR+ L EKARDI+EEGMM VVTVRDFSVIFD YS+FEE V
Sbjct: 241 IRKFTDEVGMLWTSLADYYIRKNLLEKARDIYEEGMMKVVTVRDFSVIFDVYSRFEESTV 300
Query: 301 SAKMAKPDLSVXXXXXXXXXXXXXXXXIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLA 360
+ KM S +RL+ NLS+ E +K+LNGFWL+D DVDLRLA
Sbjct: 301 AKKMEMMSSSDEEDENEENGVEDDEEDVRLNFNLSVKELQRKILNGFWLNDDNDVDLRLA 360
Query: 361 RLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVG 420
RLE LMNRRP LANSVLLRQNPHNVEQWHRRVKIFEGN KQILTYTEAVRTVDPMKAVG
Sbjct: 361 RLEELMNRRPALANSVLLRQNPHNVEQWHRRVKIFEGNAAKQILTYTEAVRTVDPMKAVG 420
Query: 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGA 480
KPHTLWVAFAKLYE +KD+ N RVIFDKAVQVNYKTVDHLAS+WCEWAEMELRHKNFKGA
Sbjct: 421 KPHTLWVAFAKLYENHKDLVNTRVIFDKAVQVNYKTVDHLASVWCEWAEMELRHKNFKGA 480
Query: 481 LELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540
LELMRRATA P+VEVRRRVAADGNEPVQMKLH+SLRLW+FYVDLEESLG LESTRAVYE+
Sbjct: 481 LELMRRATAVPTVEVRRRVAADGNEPVQMKLHRSLRLWSFYVDLEESLGTLESTRAVYEK 540
Query: 541 ILDLRIATPQIIINYALLLE 560
ILDLRIATPQII+NYA LLE
Sbjct: 541 ILDLRIATPQIIMNYAFLLE 560
Score = 40 (19.1 bits), Expect = 9.6e-242, Sum P(2) = 9.6e-242
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 513 KSLRLWTFYVDLEESLGNLESTRAVYERILD 543
+ L ++ Y+ + + TR +YE+ ++
Sbjct: 658 QKLEMYEIYISRAAEIFGVPRTREIYEQAIE 688
Score = 38 (18.4 bits), Expect = 1.6e-241, Sum P(2) = 1.6e-241
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 507 VQMKLHKSLR-LWTFYVDLEESLGNLESTRAVYE 539
V M ++R L+ Y LEE G + VYE
Sbjct: 615 VSMAPSDAVRTLYLQYAKLEEDYGLAKRAMKVYE 648
>ZFIN|ZDB-GENE-040426-685 [details] [associations]
symbol:xab2 "XPA binding protein 2" species:7955
"Danio rerio" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 PROSITE:PS50293 SMART:SM00386
ZFIN:ZDB-GENE-040426-685 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
HOVERGEN:HBG024066 EMBL:BC056771 IPI:IPI00614939 UniGene:Dr.12501
ProteinModelPortal:Q6PGZ8 STRING:Q6PGZ8 InParanoid:Q6PGZ8
ArrayExpress:Q6PGZ8 Uniprot:Q6PGZ8
Length = 851
Score = 848 (303.6 bits), Expect = 1.9e-155, Sum P(2) = 1.9e-155
Identities = 163/283 (57%), Positives = 212/283 (74%)
Query: 22 RNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITH 81
RNP+S+K W RY+ K+ A +IYERALK LPGSYKLW+ YL ER VK IT
Sbjct: 25 RNPYSVKCWMRYIEHKQSAQKSVLNMIYERALKELPGSYKLWYNYLRERRKQVKGKCITD 84
Query: 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIW 141
P YE +NN ERALV MHKMPRIWI Y + + SQ IT++RRTFDRAL ALP+TQH RIW
Sbjct: 85 PGYEEVNNCHERALVFMHKMPRIWIDYCQFMVSQCKITRSRRTFDRALRALPITQHPRIW 144
Query: 142 EIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQ 201
+YLRF +P ET++RVYRRYLK P + E++I++L EAA RLA+V+ND+
Sbjct: 145 PLYLRFARNLPLP-ETAIRVYRRYLKLSPENAEEYIDYLRSVGRLDEAALRLAAVVNDEN 203
Query: 202 FYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIR 261
F S +GK+ ++LW ELCDL++ + +++ LNV AIIRGG+ +FTD++G+LW S+ADYYIR
Sbjct: 204 FVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIRGGLTRFTDQLGKLWCSMADYYIR 263
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKM 304
FEKARD++EE ++TVVTVRDF+ +FDSY+QFEE M++AKM
Sbjct: 264 SGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEESMIAAKM 306
Score = 689 (247.6 bits), Expect = 1.9e-155, Sum P(2) = 1.9e-155
Identities = 128/207 (61%), Positives = 166/207 (80%)
Query: 354 DVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTV 413
D++LRLAR E L+ RRP L NSVLLRQNPHNV +WH+RVK++EG P + I TYTEAV+T+
Sbjct: 321 DLELRLARFESLITRRPLLLNSVLLRQNPHNVHEWHKRVKLYEGQPRQIINTYTEAVQTI 380
Query: 414 DPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELR 473
DPMKA GKPH+LWV+FAK YE + I +AR IF+KA +VNYK VD LA++WCE+ EMELR
Sbjct: 381 DPMKATGKPHSLWVSFAKFYEDNEQIDDARTIFEKATKVNYKQVDDLAAVWCEYGEMELR 440
Query: 474 HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLES 533
H+N+ A ++R+ATA P+ R+ D +EPVQ +++KSL++W+ DLEESLG +S
Sbjct: 441 HENYDQASRILRKATAIPA---RKAEYFDSSEPVQNRVYKSLKVWSMLADLEESLGTFQS 497
Query: 534 TRAVYERILDLRIATPQIIINYALLLE 560
T+AVY+RI+DLRIATPQIIINYA+ LE
Sbjct: 498 TKAVYDRIIDLRIATPQIIINYAMFLE 524
Score = 78 (32.5 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
Identities = 39/145 (26%), Positives = 60/145 (41%)
Query: 34 LVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFER 93
L K + F+ + YE + P S K W Y+ + S K++ LN +ER
Sbjct: 4 LSGKADVLFEDDDLPYEEEIIRNPYSVKCWMRYIEHKQSAQKSV---------LNMIYER 54
Query: 94 ALVTMHKMPRIWIMYLETLTSQ---KFIT-----KARRTFDRALCALPVTQHDRIWEIYL 145
AL + ++W YL Q K IT + +RAL + + RIW Y
Sbjct: 55 ALKELPGSYKLWYNYLRERRKQVKGKCITDPGYEEVNNCHERALVFMH--KMPRIWIDYC 112
Query: 146 RFVEQEGIPIETSLRVYRRYLKYDP 170
+F+ + I S R + R L+ P
Sbjct: 113 QFMVSQ-CKITRSRRTFDRALRALP 136
Score = 70 (29.7 bits), Expect = 4.4e-90, Sum P(2) = 4.4e-90
Identities = 35/149 (23%), Positives = 59/149 (39%)
Query: 337 AEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE 396
A++ K + + L+ + + LAR + R A R N+ R +I+
Sbjct: 584 AKYAKTI---YLLYAKLEEEYGLARHAMAVYERATAAVEAEERHQMFNI-YIKRAAEIYG 639
Query: 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKT 456
T+ I Y +A+ + A + + FA + +I AR I+ Q+
Sbjct: 640 VTHTRAI--YQKAIEVLPDEHA----RDMCLRFADMESKLGEIDRARAIYSYCSQICDPR 693
Query: 457 VDHLASIWCEWAEMELRHKNFKGALELMR 485
V A W W E E+RH N E++R
Sbjct: 694 VT--AHFWQTWKEFEIRHGNEDTIREMLR 720
Score = 60 (26.2 bits), Expect = 6.9e-93, Sum P(3) = 6.9e-93
Identities = 19/80 (23%), Positives = 40/80 (50%)
Query: 423 HTLWVAF-AKLYETY--KDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKG 479
H +W + K + Y K + AR +F++A+ + + +I+ +A++E + +
Sbjct: 549 HDIWNTYLTKFIDRYGGKKLERARDLFEQAL--DGCPAKYAKTIYLLYAKLEEEYGLARH 606
Query: 480 ALELMRRATAEPSVEVRRRV 499
A+ + RATA E R ++
Sbjct: 607 AMAVYERATAAVEAEERHQM 626
Score = 50 (22.7 bits), Expect = 6.9e-93, Sum P(3) = 6.9e-93
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 521 YVDLEESLGNLESTRAVYE---RILDLRI 546
+ D+E LG ++ RA+Y +I D R+
Sbjct: 666 FADMESKLGEIDRARAIYSYCSQICDPRV 694
Score = 47 (21.6 bits), Expect = 1.2e-87, Sum P(2) = 1.2e-87
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 517 LWTFYVDLEESLGNLESTRAVYER 540
++ Y LEE G AVYER
Sbjct: 590 IYLLYAKLEEEYGLARHAMAVYER 613
Score = 39 (18.8 bits), Expect = 9.9e-92, Sum P(3) = 9.9e-92
Identities = 5/29 (17%), Positives = 17/29 (58%)
Query: 516 RLWTFYVDLEESLGNLESTRAVYERILDL 544
+++ Y+ + + TRA+Y++ +++
Sbjct: 625 QMFNIYIKRAAEIYGVTHTRAIYQKAIEV 653
>MGI|MGI:1914689 [details] [associations]
symbol:Xab2 "XPA binding protein 2" species:10090 "Mus
musculus" [GO:0001824 "blastocyst development" evidence=IMP]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=ISO] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
SMART:SM00386 MGI:MGI:1914689 GO:GO:0008380 GO:GO:0006397
GO:GO:0006351 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GO:GO:0071013 GO:GO:0001824 GO:GO:0006283 eggNOG:NOG289100
KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133 CTD:56949
HOVERGEN:HBG024066 OrthoDB:EOG4G4GPQ EMBL:AK002890 EMBL:AK008628
EMBL:BC021341 IPI:IPI00120744 RefSeq:NP_080432.1 UniGene:Mm.23739
ProteinModelPortal:Q9DCD2 SMR:Q9DCD2 STRING:Q9DCD2
PhosphoSite:Q9DCD2 PaxDb:Q9DCD2 PRIDE:Q9DCD2
Ensembl:ENSMUST00000019614 GeneID:67439 KEGG:mmu:67439
UCSC:uc009kry.1 GeneTree:ENSGT00550000075140 InParanoid:Q9DCD2
NextBio:324566 Bgee:Q9DCD2 CleanEx:MM_XAB2 Genevestigator:Q9DCD2
GermOnline:ENSMUSG00000019470 Uniprot:Q9DCD2
Length = 855
Score = 827 (296.2 bits), Expect = 4.5e-152, Sum P(2) = 4.5e-152
Identities = 157/283 (55%), Positives = 208/283 (73%)
Query: 22 RNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITH 81
RN FS+K W RY+ K+ AP + +YERALK LP SYKLW+ YL R + VK+ +T
Sbjct: 30 RNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTD 89
Query: 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIW 141
P YE +NN ERA V MHKMPR+W+ Y + L Q +T RRTFDRAL ALP+TQH RIW
Sbjct: 90 PAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIW 149
Query: 142 EIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQ 201
+YLRF+ +P ET++R YRR+LK P E++IE+L S EAA+RLA+V+ND++
Sbjct: 150 PLYLRFLRSHPLP-ETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDER 208
Query: 202 FYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIR 261
F S GK+ ++LW ELCDL++ + ++ LNVDAIIRGG+ +FTD++G+LW SLADYYIR
Sbjct: 209 FVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIR 268
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKM 304
FEKARD++EE + TV+TVRDF+ +FDSY+QFEE M++AKM
Sbjct: 269 SGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKM 311
Score = 678 (243.7 bits), Expect = 4.5e-152, Sum P(2) = 4.5e-152
Identities = 130/210 (61%), Positives = 167/210 (79%)
Query: 351 DVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAV 410
DV D++LRLAR E L++RRP L NSVLLRQNPH+V +WH+RV + +G P + I TYTEAV
Sbjct: 324 DV-DLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAV 382
Query: 411 RTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEM 470
+TVDP KA GKPHTLWVAFAK YE + +ARVI +KA +VN+K VD LAS+WC+ E+
Sbjct: 383 QTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGEL 442
Query: 471 ELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN 530
ELRH+N+ AL+L+R+ATA P+ RR DG+EPVQ +++KSL++W+ DLEESLG
Sbjct: 443 ELRHENYDEALKLLRKATALPA---RRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGT 499
Query: 531 LESTRAVYERILDLRIATPQIIINYALLLE 560
+ST+AVY+RILDLRIATPQI+INYA+ LE
Sbjct: 500 FQSTKAVYDRILDLRIATPQIVINYAMFLE 529
Score = 59 (25.8 bits), Expect = 1.0e-86, Sum P(2) = 1.0e-86
Identities = 30/129 (23%), Positives = 53/129 (41%)
Query: 390 RRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKA 449
R +I+ T+ I Y +A+ + A + + FA + +I AR I+
Sbjct: 638 RAAEIYGVTHTRGI--YQKAIEVLSDEHA----REMCLRFADMECKLGEIDRARAIYSFC 691
Query: 450 VQV-NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQ 508
Q+ + +T + W W + E+RH N E++R +RR V A N V
Sbjct: 692 SQICDPRTT---GAFWQTWKDFEVRHGNEDTIREMLR---------IRRSVQATYNTQVN 739
Query: 509 MKLHKSLRL 517
+ L++
Sbjct: 740 FMASQMLKV 748
Score = 49 (22.3 bits), Expect = 1.2e-85, Sum P(2) = 1.2e-85
Identities = 17/41 (41%), Positives = 19/41 (46%)
Query: 500 AADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540
A DG P K K+L L Y LEE G AVY+R
Sbjct: 583 ALDGCPP---KYAKTLYL--LYAQLEEEWGLARHAMAVYDR 618
Score = 44 (20.5 bits), Expect = 3.7e-88, Sum P(3) = 3.7e-88
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 521 YVDLEESLGNLESTRAVY 538
+ D+E LG ++ RA+Y
Sbjct: 671 FADMECKLGEIDRARAIY 688
Score = 42 (19.8 bits), Expect = 3.7e-88, Sum P(3) = 3.7e-88
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQ 451
TL++ +A+L E + +A ++D+A +
Sbjct: 594 TLYLLYAQLEEEWGLARHAMAVYDRATR 621
>RGD|621217 [details] [associations]
symbol:Xab2 "XPA binding protein 2" species:10116 "Rattus
norvegicus" [GO:0001824 "blastocyst development" evidence=IEA;ISO]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=ISO;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=ISO;ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IEA;ISO] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
SMART:SM00386 RGD:621217 GO:GO:0008380 GO:GO:0006397 GO:GO:0006351
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0071013
GO:GO:0001824 GO:GO:0006283 eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW
HOGENOM:HOG000176133 CTD:56949 HOVERGEN:HBG024066 OrthoDB:EOG4G4GPQ
GeneTree:ENSGT00550000075140 EMBL:AF277899 EMBL:BC081723
IPI:IPI00201089 RefSeq:NP_620809.1 UniGene:Rn.24921
ProteinModelPortal:Q99PK0 STRING:Q99PK0 Ensembl:ENSRNOT00000001309
GeneID:245976 KEGG:rno:245976 UCSC:RGD:621217 InParanoid:Q99PK0
NextBio:623254 Genevestigator:Q99PK0 GermOnline:ENSRNOG00000000988
Uniprot:Q99PK0
Length = 855
Score = 827 (296.2 bits), Expect = 4.5e-152, Sum P(2) = 4.5e-152
Identities = 157/283 (55%), Positives = 208/283 (73%)
Query: 22 RNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITH 81
RN FS+K W RY+ K+ AP + +YERALK LP SYKLW+ YL R + VK+ +T
Sbjct: 30 RNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTD 89
Query: 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIW 141
P YE +NN ERA V MHKMPR+W+ Y + L Q +T RRTFDRAL ALP+TQH RIW
Sbjct: 90 PAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIW 149
Query: 142 EIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQ 201
+YLRF+ +P ET++R YRR+LK P E++IE+L S EAA+RLA+V+ND++
Sbjct: 150 PLYLRFLRSHPLP-ETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDER 208
Query: 202 FYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIR 261
F S GK+ ++LW ELCDL++ + ++ LNVDAIIRGG+ +FTD++G+LW SLADYYIR
Sbjct: 209 FVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIR 268
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKM 304
FEKARD++EE + TV+TVRDF+ +FDSY+QFEE M++AKM
Sbjct: 269 SGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKM 311
Score = 678 (243.7 bits), Expect = 4.5e-152, Sum P(2) = 4.5e-152
Identities = 130/210 (61%), Positives = 167/210 (79%)
Query: 351 DVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAV 410
DV D++LRLAR E L++RRP L NSVLLRQNPH+V +WH+RV + +G P + I TYTEAV
Sbjct: 324 DV-DLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAV 382
Query: 411 RTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEM 470
+TVDP KA GKPHTLWVAFAK YE + +ARVI +KA +VN+K VD LAS+WC+ E+
Sbjct: 383 QTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGEL 442
Query: 471 ELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN 530
ELRH+N+ AL+L+R+ATA P+ RR DG+EPVQ +++KSL++W+ DLEESLG
Sbjct: 443 ELRHENYDEALKLLRKATALPA---RRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGT 499
Query: 531 LESTRAVYERILDLRIATPQIIINYALLLE 560
+ST+AVY+RILDLRIATPQI+INYA+ LE
Sbjct: 500 FQSTKAVYDRILDLRIATPQIVINYAMFLE 529
Score = 59 (25.8 bits), Expect = 1.0e-86, Sum P(2) = 1.0e-86
Identities = 30/129 (23%), Positives = 53/129 (41%)
Query: 390 RRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKA 449
R +I+ T+ I Y +A+ + A + + FA + +I AR I+
Sbjct: 638 RAAEIYGVTHTRGI--YQKAIEVLSDEHA----REMCLRFADMECKLGEIDRARAIYSFC 691
Query: 450 VQV-NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQ 508
Q+ + +T + W W + E+RH N E++R +RR V A N V
Sbjct: 692 SQICDPRTT---GAFWQTWKDFEVRHGNEDTIREMLR---------IRRSVQATYNTQVN 739
Query: 509 MKLHKSLRL 517
+ L++
Sbjct: 740 FMASQMLKV 748
Score = 49 (22.3 bits), Expect = 1.2e-85, Sum P(2) = 1.2e-85
Identities = 17/41 (41%), Positives = 19/41 (46%)
Query: 500 AADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540
A DG P K K+L L Y LEE G AVY+R
Sbjct: 583 ALDGCPP---KYAKTLYL--LYAQLEEEWGLARHAMAVYDR 618
Score = 44 (20.5 bits), Expect = 3.7e-88, Sum P(3) = 3.7e-88
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 521 YVDLEESLGNLESTRAVY 538
+ D+E LG ++ RA+Y
Sbjct: 671 FADMECKLGEIDRARAIY 688
Score = 42 (19.8 bits), Expect = 3.7e-88, Sum P(3) = 3.7e-88
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQ 451
TL++ +A+L E + +A ++D+A +
Sbjct: 594 TLYLLYAQLEEEWGLARHAMAVYDRATR 621
>UNIPROTKB|F5H315 [details] [associations]
symbol:XAB2 "Pre-mRNA-splicing factor SYF1" species:9606
"Homo sapiens" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0001824 "blastocyst
development" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 InterPro:IPR019734 PROSITE:PS50005
PROSITE:PS50293 SMART:SM00386 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0001824
EMBL:AC008763 HGNC:HGNC:14089 ChiTaRS:XAB2 IPI:IPI01015328
ProteinModelPortal:F5H315 SMR:F5H315 Ensembl:ENST00000534844
ArrayExpress:F5H315 Bgee:F5H315 Uniprot:F5H315
Length = 852
Score = 827 (296.2 bits), Expect = 5.7e-152, Sum P(2) = 5.7e-152
Identities = 157/283 (55%), Positives = 208/283 (73%)
Query: 22 RNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITH 81
RN FS+K W RY+ K+ AP + +YERALK LP SYKLW+ YL R + VK+ +T
Sbjct: 27 RNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTD 86
Query: 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIW 141
P YE +NN ERA V MHKMPR+W+ Y + L Q +T RRTFDRAL ALP+TQH RIW
Sbjct: 87 PAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIW 146
Query: 142 EIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQ 201
+YLRF+ +P ET++R YRR+LK P E++IE+L S EAA+RLA+V+ND++
Sbjct: 147 PLYLRFLRSHPLP-ETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDER 205
Query: 202 FYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIR 261
F S GK+ ++LW ELCDL++ + ++ LNVDAIIRGG+ +FTD++G+LW SLADYYIR
Sbjct: 206 FVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIR 265
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKM 304
FEKARD++EE + TV+TVRDF+ +FDSY+QFEE M++AKM
Sbjct: 266 SGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKM 308
Score = 677 (243.4 bits), Expect = 5.7e-152, Sum P(2) = 5.7e-152
Identities = 130/210 (61%), Positives = 166/210 (79%)
Query: 351 DVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAV 410
DV D++LRLAR E L++RRP L NSVLLRQNPH+V +WH+RV + +G P + I TYTEAV
Sbjct: 321 DV-DLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAV 379
Query: 411 RTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEM 470
+TVDP KA GKPHTLWVAFAK YE + +ARVI +KA +VN+K VD LAS+WC+ E+
Sbjct: 380 QTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGEL 439
Query: 471 ELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN 530
ELRH+N+ AL L+R+ATA P+ RR DG+EPVQ +++KSL++W+ DLEESLG
Sbjct: 440 ELRHENYDEALRLLRKATALPA---RRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGT 496
Query: 531 LESTRAVYERILDLRIATPQIIINYALLLE 560
+ST+AVY+RILDLRIATPQI+INYA+ LE
Sbjct: 497 FQSTKAVYDRILDLRIATPQIVINYAMFLE 526
Score = 59 (25.8 bits), Expect = 1.0e-86, Sum P(2) = 1.0e-86
Identities = 30/129 (23%), Positives = 53/129 (41%)
Query: 390 RRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKA 449
R +I+ T+ I Y +A+ + A + + FA + +I AR I+
Sbjct: 635 RAAEIYGVTHTRGI--YQKAIEVLSDEHA----REMCLRFADMECKLGEIDRARAIYSFC 688
Query: 450 VQV-NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQ 508
Q+ + +T + W W + E+RH N E++R +RR V A N V
Sbjct: 689 SQICDPRTT---GAFWQTWKDFEVRHGNEDTIKEMLR---------IRRSVQATYNTQVN 736
Query: 509 MKLHKSLRL 517
+ L++
Sbjct: 737 FMASQMLKV 745
Score = 52 (23.4 bits), Expect = 5.7e-86, Sum P(2) = 5.7e-86
Identities = 18/41 (43%), Positives = 19/41 (46%)
Query: 500 AADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540
A DG P K K+L L Y LEE G AVYER
Sbjct: 580 ALDGCPP---KYAKTLYL--LYAQLEEEWGLARHAMAVYER 615
Score = 44 (20.5 bits), Expect = 9.7e-88, Sum P(3) = 9.7e-88
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 521 YVDLEESLGNLESTRAVY 538
+ D+E LG ++ RA+Y
Sbjct: 668 FADMECKLGEIDRARAIY 685
Score = 38 (18.4 bits), Expect = 9.7e-88, Sum P(3) = 9.7e-88
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQ 451
TL++ +A+L E + +A ++++A +
Sbjct: 591 TLYLLYAQLEEEWGLARHAMAVYERATR 618
>UNIPROTKB|Q9HCS7 [details] [associations]
symbol:XAB2 "Pre-mRNA-splicing factor SYF1" species:9606
"Homo sapiens" [GO:0001824 "blastocyst development" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IDA]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=IDA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IC] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] Reactome:REACT_216
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 SMART:SM00386 GO:GO:0005654 GO:GO:0006351
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0000398
GO:GO:0071013 GO:GO:0001824 GO:GO:0006283 eggNOG:NOG289100
KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133 EMBL:AB026111
EMBL:AF226051 EMBL:AF258567 EMBL:AF547265 EMBL:BC007208
EMBL:BC008778 EMBL:AK074035 EMBL:AB033003 IPI:IPI00163084
RefSeq:NP_064581.2 UniGene:Hs.9822 ProteinModelPortal:Q9HCS7
SMR:Q9HCS7 IntAct:Q9HCS7 MINT:MINT-1475513 STRING:Q9HCS7
PhosphoSite:Q9HCS7 DMDM:25091548 PaxDb:Q9HCS7 PeptideAtlas:Q9HCS7
PRIDE:Q9HCS7 DNASU:56949 Ensembl:ENST00000358368 GeneID:56949
KEGG:hsa:56949 UCSC:uc002mgx.3 CTD:56949 GeneCards:GC19M007684
HGNC:HGNC:14089 MIM:610850 neXtProt:NX_Q9HCS7 PharmGKB:PA134905925
HOVERGEN:HBG024066 InParanoid:Q9HCS7 OrthoDB:EOG4G4GPQ ChiTaRS:XAB2
GenomeRNAi:56949 NextBio:62545 ArrayExpress:Q9HCS7 Bgee:Q9HCS7
CleanEx:HS_XAB2 Genevestigator:Q9HCS7 GermOnline:ENSG00000076924
Uniprot:Q9HCS7
Length = 855
Score = 827 (296.2 bits), Expect = 5.7e-152, Sum P(2) = 5.7e-152
Identities = 157/283 (55%), Positives = 208/283 (73%)
Query: 22 RNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITH 81
RN FS+K W RY+ K+ AP + +YERALK LP SYKLW+ YL R + VK+ +T
Sbjct: 30 RNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTD 89
Query: 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIW 141
P YE +NN ERA V MHKMPR+W+ Y + L Q +T RRTFDRAL ALP+TQH RIW
Sbjct: 90 PAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIW 149
Query: 142 EIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQ 201
+YLRF+ +P ET++R YRR+LK P E++IE+L S EAA+RLA+V+ND++
Sbjct: 150 PLYLRFLRSHPLP-ETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDER 208
Query: 202 FYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIR 261
F S GK+ ++LW ELCDL++ + ++ LNVDAIIRGG+ +FTD++G+LW SLADYYIR
Sbjct: 209 FVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIR 268
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKM 304
FEKARD++EE + TV+TVRDF+ +FDSY+QFEE M++AKM
Sbjct: 269 SGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKM 311
Score = 677 (243.4 bits), Expect = 5.7e-152, Sum P(2) = 5.7e-152
Identities = 130/210 (61%), Positives = 166/210 (79%)
Query: 351 DVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAV 410
DV D++LRLAR E L++RRP L NSVLLRQNPH+V +WH+RV + +G P + I TYTEAV
Sbjct: 324 DV-DLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAV 382
Query: 411 RTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEM 470
+TVDP KA GKPHTLWVAFAK YE + +ARVI +KA +VN+K VD LAS+WC+ E+
Sbjct: 383 QTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGEL 442
Query: 471 ELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN 530
ELRH+N+ AL L+R+ATA P+ RR DG+EPVQ +++KSL++W+ DLEESLG
Sbjct: 443 ELRHENYDEALRLLRKATALPA---RRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGT 499
Query: 531 LESTRAVYERILDLRIATPQIIINYALLLE 560
+ST+AVY+RILDLRIATPQI+INYA+ LE
Sbjct: 500 FQSTKAVYDRILDLRIATPQIVINYAMFLE 529
Score = 59 (25.8 bits), Expect = 1.0e-86, Sum P(2) = 1.0e-86
Identities = 30/129 (23%), Positives = 53/129 (41%)
Query: 390 RRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKA 449
R +I+ T+ I Y +A+ + A + + FA + +I AR I+
Sbjct: 638 RAAEIYGVTHTRGI--YQKAIEVLSDEHA----REMCLRFADMECKLGEIDRARAIYSFC 691
Query: 450 VQV-NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQ 508
Q+ + +T + W W + E+RH N E++R +RR V A N V
Sbjct: 692 SQICDPRTT---GAFWQTWKDFEVRHGNEDTIKEMLR---------IRRSVQATYNTQVN 739
Query: 509 MKLHKSLRL 517
+ L++
Sbjct: 740 FMASQMLKV 748
Score = 52 (23.4 bits), Expect = 5.7e-86, Sum P(2) = 5.7e-86
Identities = 18/41 (43%), Positives = 19/41 (46%)
Query: 500 AADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540
A DG P K K+L L Y LEE G AVYER
Sbjct: 583 ALDGCPP---KYAKTLYL--LYAQLEEEWGLARHAMAVYER 618
Score = 44 (20.5 bits), Expect = 9.7e-88, Sum P(3) = 9.7e-88
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 521 YVDLEESLGNLESTRAVY 538
+ D+E LG ++ RA+Y
Sbjct: 671 FADMECKLGEIDRARAIY 688
Score = 38 (18.4 bits), Expect = 9.7e-88, Sum P(3) = 9.7e-88
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQ 451
TL++ +A+L E + +A ++++A +
Sbjct: 594 TLYLLYAQLEEEWGLARHAMAVYERATR 621
>UNIPROTKB|F6RY07 [details] [associations]
symbol:XAB2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
PROSITE:PS50005 PROSITE:PS50293 SMART:SM00386 GO:GO:0006351
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GO:GO:0071013 GO:GO:0001824 GO:GO:0006283 OMA:PRSYKLW
GeneTree:ENSGT00550000075140 EMBL:DAAA02019501 IPI:IPI00700985
Ensembl:ENSBTAT00000015097 Uniprot:F6RY07
Length = 855
Score = 827 (296.2 bits), Expect = 9.3e-152, Sum P(2) = 9.3e-152
Identities = 157/283 (55%), Positives = 208/283 (73%)
Query: 22 RNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITH 81
RN FS+K W RY+ K+ AP + +YERALK LP SYKLW+ YL R + VK+ +T
Sbjct: 30 RNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTD 89
Query: 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIW 141
P YE +NN ERA V MHKMPR+W+ Y + L Q +T RRTFDRAL ALP+TQH RIW
Sbjct: 90 PAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIW 149
Query: 142 EIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQ 201
+YLRF+ +P ET++R YRR+LK P E++IE+L S EAA+RLA+V+ND++
Sbjct: 150 PLYLRFLRSHPLP-ETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDER 208
Query: 202 FYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIR 261
F S GK+ ++LW ELCDL++ + ++ LNVDAIIRGG+ +FTD++G+LW SLADYYIR
Sbjct: 209 FVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIR 268
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKM 304
FEKARD++EE + TV+TVRDF+ +FDSY+QFEE M++AKM
Sbjct: 269 SGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKM 311
Score = 675 (242.7 bits), Expect = 9.3e-152, Sum P(2) = 9.3e-152
Identities = 130/210 (61%), Positives = 166/210 (79%)
Query: 351 DVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAV 410
DV D++LRLAR E L++RRP L NSVLLRQNPH+V +WH+RV + +G P + I TYTEAV
Sbjct: 324 DV-DLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVPLHQGRPREIINTYTEAV 382
Query: 411 RTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEM 470
+TVDP KA GKPHTLWVAFAK YE + +ARVI +KA +V++K VD LAS+WCE E+
Sbjct: 383 QTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVSFKQVDDLASVWCECGEL 442
Query: 471 ELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN 530
ELRH+N+ AL L+R+ATA P+ RR DG+EPVQ +++KSL++W+ DLEESLG
Sbjct: 443 ELRHENYDQALRLLRKATALPA---RRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGT 499
Query: 531 LESTRAVYERILDLRIATPQIIINYALLLE 560
+ST+AVY+RILDLRIATPQI+INYA+ LE
Sbjct: 500 FQSTKAVYDRILDLRIATPQIVINYAMFLE 529
Score = 61 (26.5 bits), Expect = 6.4e-87, Sum P(2) = 6.4e-87
Identities = 30/129 (23%), Positives = 53/129 (41%)
Query: 390 RRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKA 449
R +I+ T+ I Y +A+ + A + + FA + +I AR I+
Sbjct: 638 RAAEIYGVTHTRSI--YQKAIEVLSDEHA----REMCLRFADMECKLGEIDRARAIYSFC 691
Query: 450 VQV-NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQ 508
Q+ + +T + W W + E+RH N E++R +RR V A N V
Sbjct: 692 SQICDPRTT---GAFWQTWKDFEVRHGNEDTIREMLR---------IRRSVQATYNTQVN 739
Query: 509 MKLHKSLRL 517
+ L++
Sbjct: 740 FMASQMLKV 748
Score = 52 (23.4 bits), Expect = 5.7e-86, Sum P(2) = 5.7e-86
Identities = 18/41 (43%), Positives = 19/41 (46%)
Query: 500 AADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540
A DG P K K+L L Y LEE G AVYER
Sbjct: 583 ALDGCPP---KYAKTLYL--LYAQLEEEWGLARHAMAVYER 618
Score = 44 (20.5 bits), Expect = 9.7e-88, Sum P(3) = 9.7e-88
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 521 YVDLEESLGNLESTRAVY 538
+ D+E LG ++ RA+Y
Sbjct: 671 FADMECKLGEIDRARAIY 688
Score = 38 (18.4 bits), Expect = 9.7e-88, Sum P(3) = 9.7e-88
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQ 451
TL++ +A+L E + +A ++++A +
Sbjct: 594 TLYLLYAQLEEEWGLARHAMAVYERATR 621
>UNIPROTKB|F1SCH5 [details] [associations]
symbol:XAB2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
PROSITE:PS50005 PROSITE:PS50293 SMART:SM00386 GO:GO:0006351
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GO:GO:0071013 GO:GO:0001824 GO:GO:0006283 KO:K12867 OMA:PRSYKLW
CTD:56949 GeneTree:ENSGT00550000075140 EMBL:CU929919
RefSeq:XP_003123199.1 UniGene:Ssc.48349 Ensembl:ENSSSCT00000014834
GeneID:100525328 KEGG:ssc:100525328 Uniprot:F1SCH5
Length = 855
Score = 827 (296.2 bits), Expect = 9.3e-152, Sum P(2) = 9.3e-152
Identities = 157/283 (55%), Positives = 208/283 (73%)
Query: 22 RNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITH 81
RN FS+K W RY+ K+ AP + +YERALK LP SYKLW+ YL R + VK+ +T
Sbjct: 30 RNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTD 89
Query: 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIW 141
P YE +NN ERA V MHKMPR+W+ Y + L Q +T RRTFDRAL ALP+TQH RIW
Sbjct: 90 PAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIW 149
Query: 142 EIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQ 201
+YLRF+ +P ET++R YRR+LK P E++IE+L S EAA+RLA+V+ND++
Sbjct: 150 PLYLRFLRSHPLP-ETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDER 208
Query: 202 FYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIR 261
F S GK+ ++LW ELCDL++ + ++ LNVDAIIRGG+ +FTD++G+LW SLADYYIR
Sbjct: 209 FVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIR 268
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKM 304
FEKARD++EE + TV+TVRDF+ +FDSY+QFEE M++AKM
Sbjct: 269 SGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKM 311
Score = 675 (242.7 bits), Expect = 9.3e-152, Sum P(2) = 9.3e-152
Identities = 130/210 (61%), Positives = 166/210 (79%)
Query: 351 DVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAV 410
DV D++LRLAR E L++RRP L NSVLLRQNPH+V +WH+RV + +G P + I TYTEAV
Sbjct: 324 DV-DLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAV 382
Query: 411 RTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEM 470
+TVDP KA GKPHTLWVAFAK YE + +ARVI +KA +V++K VD LAS+WCE E+
Sbjct: 383 QTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVSFKQVDDLASVWCECGEL 442
Query: 471 ELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN 530
ELRH+N+ AL L+R+ATA P+ RR DG+EPVQ +++KSL++W+ DLEESLG
Sbjct: 443 ELRHENYDQALRLLRKATALPA---RRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGT 499
Query: 531 LESTRAVYERILDLRIATPQIIINYALLLE 560
+ST+AVY+RILDLRIATPQI+INYA+ LE
Sbjct: 500 FQSTKAVYDRILDLRIATPQIVINYAMFLE 529
Score = 59 (25.8 bits), Expect = 1.0e-86, Sum P(2) = 1.0e-86
Identities = 30/129 (23%), Positives = 53/129 (41%)
Query: 390 RRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKA 449
R +I+ T+ I Y +A+ + A + + FA + +I AR I+
Sbjct: 638 RAAEIYGVTHTRGI--YQKAIEVLSDEHA----REMCLRFADMECKLGEIDRARAIYSFC 691
Query: 450 VQV-NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQ 508
Q+ + +T + W W + E+RH N E++R +RR V A N V
Sbjct: 692 SQICDPRTT---GAFWQTWKDFEVRHGNEDTIREMLR---------IRRSVQATYNTQVN 739
Query: 509 MKLHKSLRL 517
+ L++
Sbjct: 740 FMASQMLKV 748
Score = 52 (23.4 bits), Expect = 5.7e-86, Sum P(2) = 5.7e-86
Identities = 18/41 (43%), Positives = 19/41 (46%)
Query: 500 AADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540
A DG P K K+L L Y LEE G AVYER
Sbjct: 583 ALDGCPP---KYAKTLYL--LYAQLEEEWGLARHAMAVYER 618
Score = 44 (20.5 bits), Expect = 9.7e-88, Sum P(3) = 9.7e-88
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 521 YVDLEESLGNLESTRAVY 538
+ D+E LG ++ RA+Y
Sbjct: 671 FADMECKLGEIDRARAIY 688
Score = 38 (18.4 bits), Expect = 9.7e-88, Sum P(3) = 9.7e-88
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQ 451
TL++ +A+L E + +A ++++A +
Sbjct: 594 TLYLLYAQLEEEWGLARHAMAVYERATR 621
>UNIPROTKB|E2RPV4 [details] [associations]
symbol:XAB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0001824 "blastocyst
development" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 InterPro:IPR019734 PROSITE:PS50005
PROSITE:PS50293 SMART:SM00386 GO:GO:0006351 GO:GO:0006396
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0071013
GO:GO:0001824 GO:GO:0006283 KO:K12867 CTD:56949
GeneTree:ENSGT00550000075140 EMBL:AAEX03012459 RefSeq:XP_542113.3
ProteinModelPortal:E2RPV4 Ensembl:ENSCAFT00000029071 GeneID:484995
KEGG:cfa:484995 OMA:RRYLMYD NextBio:20859059 Uniprot:E2RPV4
Length = 855
Score = 827 (296.2 bits), Expect = 1.5e-151, Sum P(2) = 1.5e-151
Identities = 157/283 (55%), Positives = 208/283 (73%)
Query: 22 RNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITH 81
RN FS+K W RY+ K+ AP + +YERALK LP SYKLW+ YL R + VK+ +T
Sbjct: 30 RNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTD 89
Query: 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIW 141
P YE +NN ERA V MHKMPR+W+ Y + L Q +T RRTFDRAL ALP+TQH RIW
Sbjct: 90 PAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIW 149
Query: 142 EIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQ 201
+YLRF+ +P ET++R YRR+LK P E++IE+L S EAA+RLA+V+ND++
Sbjct: 150 PLYLRFLRSHPLP-ETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDER 208
Query: 202 FYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIR 261
F S GK+ ++LW ELCDL++ + ++ LNVDAIIRGG+ +FTD++G+LW SLADYYIR
Sbjct: 209 FVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIR 268
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKM 304
FEKARD++EE + TV+TVRDF+ +FDSY+QFEE M++AKM
Sbjct: 269 SGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKM 311
Score = 673 (242.0 bits), Expect = 1.5e-151, Sum P(2) = 1.5e-151
Identities = 129/210 (61%), Positives = 165/210 (78%)
Query: 351 DVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAV 410
DV D++LRLAR E L+ RRP L NSVLLRQNPH+V +WH+RV + +G P + I TYTEAV
Sbjct: 324 DV-DLELRLARFEQLIGRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAV 382
Query: 411 RTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEM 470
+TVDP KA GKPHTLWVAFAK YE + +AR+I +KA +V++K VD LAS+WCE E+
Sbjct: 383 QTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARIILEKATKVSFKQVDDLASVWCECGEL 442
Query: 471 ELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN 530
ELRH+N+ AL L+R+ATA P+ RR DG+EPVQ +++KSL++W+ DLEESLG
Sbjct: 443 ELRHENYDQALRLLRKATALPA---RRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGT 499
Query: 531 LESTRAVYERILDLRIATPQIIINYALLLE 560
+ST+AVY+RILDLRIATPQI+INYA+ LE
Sbjct: 500 FQSTKAVYDRILDLRIATPQIVINYAMFLE 529
Score = 59 (25.8 bits), Expect = 1.0e-86, Sum P(2) = 1.0e-86
Identities = 30/129 (23%), Positives = 53/129 (41%)
Query: 390 RRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKA 449
R +I+ T+ I Y +A+ + A + + FA + +I AR I+
Sbjct: 638 RAAEIYGVTHTRGI--YQKAIEVLSDEHA----REMCLRFADMECRLGEIDRARAIYSFC 691
Query: 450 VQV-NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQ 508
Q+ + +T + W W + E+RH N E++R +RR V A N V
Sbjct: 692 SQICDPRTT---GAFWQTWKDFEVRHGNEDTIREMLR---------IRRSVQATYNTQVN 739
Query: 509 MKLHKSLRL 517
+ L++
Sbjct: 740 FMASQMLKV 748
Score = 52 (23.4 bits), Expect = 5.7e-86, Sum P(2) = 5.7e-86
Identities = 18/41 (43%), Positives = 19/41 (46%)
Query: 500 AADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540
A DG P K K+L L Y LEE G AVYER
Sbjct: 583 ALDGCPP---KYAKTLYL--LYAQLEEEWGLARHAMAVYER 618
Score = 43 (20.2 bits), Expect = 1.2e-87, Sum P(3) = 1.2e-87
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 521 YVDLEESLGNLESTRAVY 538
+ D+E LG ++ RA+Y
Sbjct: 671 FADMECRLGEIDRARAIY 688
Score = 38 (18.4 bits), Expect = 1.2e-87, Sum P(3) = 1.2e-87
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQ 451
TL++ +A+L E + +A ++++A +
Sbjct: 594 TLYLLYAQLEEEWGLARHAMAVYERATR 621
>UNIPROTKB|J9PAI6 [details] [associations]
symbol:XAB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
PROSITE:PS50005 PROSITE:PS50293 SMART:SM00386 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GeneTree:ENSGT00550000075140 EMBL:AAEX03012459
Ensembl:ENSCAFT00000044264 Uniprot:J9PAI6
Length = 799
Score = 827 (296.2 bits), Expect = 1.5e-151, Sum P(2) = 1.5e-151
Identities = 157/283 (55%), Positives = 208/283 (73%)
Query: 22 RNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITH 81
RN FS+K W RY+ K+ AP + +YERALK LP SYKLW+ YL R + VK+ +T
Sbjct: 30 RNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTD 89
Query: 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIW 141
P YE +NN ERA V MHKMPR+W+ Y + L Q +T RRTFDRAL ALP+TQH RIW
Sbjct: 90 PAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIW 149
Query: 142 EIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQ 201
+YLRF+ +P ET++R YRR+LK P E++IE+L S EAA+RLA+V+ND++
Sbjct: 150 PLYLRFLRSHPLP-ETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDER 208
Query: 202 FYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIR 261
F S GK+ ++LW ELCDL++ + ++ LNVDAIIRGG+ +FTD++G+LW SLADYYIR
Sbjct: 209 FVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIR 268
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKM 304
FEKARD++EE + TV+TVRDF+ +FDSY+QFEE M++AKM
Sbjct: 269 SGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKM 311
Score = 673 (242.0 bits), Expect = 1.5e-151, Sum P(2) = 1.5e-151
Identities = 129/210 (61%), Positives = 165/210 (78%)
Query: 351 DVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAV 410
DV D++LRLAR E L+ RRP L NSVLLRQNPH+V +WH+RV + +G P + I TYTEAV
Sbjct: 324 DV-DLELRLARFEQLIGRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAV 382
Query: 411 RTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEM 470
+TVDP KA GKPHTLWVAFAK YE + +AR+I +KA +V++K VD LAS+WCE E+
Sbjct: 383 QTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARIILEKATKVSFKQVDDLASVWCECGEL 442
Query: 471 ELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN 530
ELRH+N+ AL L+R+ATA P+ RR DG+EPVQ +++KSL++W+ DLEESLG
Sbjct: 443 ELRHENYDQALRLLRKATALPA---RRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGT 499
Query: 531 LESTRAVYERILDLRIATPQIIINYALLLE 560
+ST+AVY+RILDLRIATPQI+INYA+ LE
Sbjct: 500 FQSTKAVYDRILDLRIATPQIVINYAMFLE 529
Score = 59 (25.8 bits), Expect = 1.0e-86, Sum P(2) = 1.0e-86
Identities = 30/129 (23%), Positives = 53/129 (41%)
Query: 390 RRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKA 449
R +I+ T+ I Y +A+ + A + + FA + +I AR I+
Sbjct: 638 RAAEIYGVTHTRGI--YQKAIEVLSDEHA----REMCLRFADMECRLGEIDRARAIYSFC 691
Query: 450 VQV-NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQ 508
Q+ + +T + W W + E+RH N E++R +RR V A N V
Sbjct: 692 SQICDPRTT---GAFWQTWKDFEVRHGNEDTIREMLR---------IRRSVQATYNTQVN 739
Query: 509 MKLHKSLRL 517
+ L++
Sbjct: 740 FMASQMLKV 748
Score = 52 (23.4 bits), Expect = 5.7e-86, Sum P(2) = 5.7e-86
Identities = 18/41 (43%), Positives = 19/41 (46%)
Query: 500 AADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540
A DG P K K+L L Y LEE G AVYER
Sbjct: 583 ALDGCPP---KYAKTLYL--LYAQLEEEWGLARHAMAVYER 618
Score = 43 (20.2 bits), Expect = 1.2e-87, Sum P(3) = 1.2e-87
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 521 YVDLEESLGNLESTRAVY 538
+ D+E LG ++ RA+Y
Sbjct: 671 FADMECRLGEIDRARAIY 688
Score = 38 (18.4 bits), Expect = 1.2e-87, Sum P(3) = 1.2e-87
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQ 451
TL++ +A+L E + +A ++++A +
Sbjct: 594 TLYLLYAQLEEEWGLARHAMAVYERATR 621
>FB|FBgn0033859 [details] [associations]
symbol:CG6197 species:7227 "Drosophila melanogaster"
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
[GO:0006911 "phagocytosis, engulfment" evidence=IMP] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0071013 "catalytic step
2 spliceosome" evidence=IDA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 EMBL:AE013599 GO:GO:0006911 Gene3D:1.25.40.10
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0000381
eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW GeneTree:ENSGT00550000075140
EMBL:BT133178 RefSeq:NP_610891.1 UniGene:Dm.606 SMR:A1Z9G2
IntAct:A1Z9G2 STRING:A1Z9G2 EnsemblMetazoa:FBtr0087623 GeneID:36514
KEGG:dme:Dmel_CG6197 UCSC:CG6197-RA FlyBase:FBgn0033859
InParanoid:A1Z9G2 OrthoDB:EOG42FQZD GenomeRNAi:36514 NextBio:798953
Uniprot:A1Z9G2
Length = 883
Score = 798 (286.0 bits), Expect = 1.1e-144, Sum P(2) = 1.1e-144
Identities = 150/283 (53%), Positives = 207/283 (73%)
Query: 22 RNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITH 81
RN +S+K W RY+ K +AP ++YERALK LPGSYK+WH YL R V+ T
Sbjct: 28 RNAYSVKHWLRYIDHKAKAPNNGVNMVYERALKELPGSYKIWHNYLRTRRKQVRGKIPTD 87
Query: 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIW 141
P YE +N+ FERALV MHKMPRIW+ Y +TSQ IT+ R FDRAL ALP+TQH RIW
Sbjct: 88 PMYEEVNSAFERALVFMHKMPRIWMDYGAFMTSQCKITRTRHVFDRALRALPITQHGRIW 147
Query: 142 EIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQ 201
+YL+FV + +P ET+LRVYRRYLK P E+++++L ++ EAA++LA +++++
Sbjct: 148 PLYLQFVRRFEMP-ETALRVYRRYLKLFPEDTEEYVDYLQEADRLDEAAQQLAHIVDNEH 206
Query: 202 FYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIR 261
F S GK+ H+LW ELCDL++ + ++ LNVDAIIRGG+R++TD++G LW SLADYY+R
Sbjct: 207 FVSKHGKSNHQLWNELCDLISKNPHKVHSLNVDAIIRGGLRRYTDQLGHLWNSLADYYVR 266
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKM 304
LF++ARDI+EE + TV TVRDF+ +FD Y+QFEE+ ++ +M
Sbjct: 267 SGLFDRARDIYEEAIQTVTTVRDFTQVFDEYAQFEELSLNRRM 309
Score = 637 (229.3 bits), Expect = 1.1e-144, Sum P(2) = 1.1e-144
Identities = 120/208 (57%), Positives = 157/208 (75%)
Query: 354 DVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTV 413
DV+LRL+R E+LM RR L NSVLLRQNPHNV +WH+RV ++E P + I TYTEAV+TV
Sbjct: 325 DVELRLSRFEYLMERRLLLLNSVLLRQNPHNVHEWHKRVTLYEDKPAEIISTYTEAVQTV 384
Query: 414 DPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELR 473
P +AVGK HTLWV FAK YE + +ARV+F++ +V Y V+ LA++WCEWAEMELR
Sbjct: 385 QPKQAVGKLHTLWVEFAKFYEANGQVEDARVVFERGTEVEYVKVEDLAAVWCEWAEMELR 444
Query: 474 HKNFKGALELMRRATAEPSVEVRRRVAA-DGNEPVQMKLHKSLRLWTFYVDLEESLGNLE 532
+ F+ AL+LM+RATA P +R++A D E VQ +LH+SL++W+ Y DLEES G +
Sbjct: 445 QQQFEAALKLMQRATAMP----KRKIAYYDDTETVQARLHRSLKVWSMYADLEESFGTFK 500
Query: 533 STRAVYERILDLRIATPQIIINYALLLE 560
+ +AVYERI+DL+I TPQIIINY + LE
Sbjct: 501 TCKAVYERIIDLKICTPQIIINYGMFLE 528
Score = 72 (30.4 bits), Expect = 5.0e-85, Sum P(2) = 5.0e-85
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 397 GNP-TKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK 455
G P T++I Y +A+ ++ P + + H + V FA+L ++ AR I+ QV
Sbjct: 643 GLPRTREI--YEKAIESL-PEQNMR--H-MCVKFAELETKLGEVDRARAIYAHCSQVCDP 696
Query: 456 TVDHLASIWCEWAEMELRHKNFKGALELMR 485
+ A W W E E+RH N E++R
Sbjct: 697 RIT--ADFWQTWKEFEVRHGNEDTMREMLR 724
Score = 46 (21.3 bits), Expect = 1.2e-85, Sum P(3) = 1.2e-85
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 521 YVDLEESLGNLESTRAVY---ERILDLRI 546
+ +LE LG ++ RA+Y ++ D RI
Sbjct: 670 FAELETKLGEVDRARAIYAHCSQVCDPRI 698
Score = 45 (20.9 bits), Expect = 1.2e-85, Sum P(3) = 1.2e-85
Identities = 15/70 (21%), Positives = 34/70 (48%)
Query: 423 HTLWVAF-AKLYETY--KDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKG 479
+ +W ++ K E Y + AR +F++ + + +H + +A++E H +
Sbjct: 553 YDIWNSYLTKFLERYGGTKLERARDLFEQCL--DQCPPEHAKYFYLLYAKLEEEHGLARH 610
Query: 480 ALELMRRATA 489
A+ + RAT+
Sbjct: 611 AMSVYDRATS 620
Score = 37 (18.1 bits), Expect = 2.5e-81, Sum P(2) = 2.5e-81
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 518 WTFYVDLEESLGNLESTRAVYER 540
+ Y LEE G +VY+R
Sbjct: 595 YLLYAKLEEEHGLARHAMSVYDR 617
>DICTYBASE|DDB_G0277977 [details] [associations]
symbol:xab2 "TPR-like helical domain-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 dictyBase:DDB_G0277977 GO:GO:0005634 GO:GO:0008380
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006281
GO:GO:0006397 GO:GO:0006351 Gene3D:1.25.40.10 RefSeq:XP_642044.1
ProteinModelPortal:Q54Z08 STRING:Q54Z08 EnsemblProtists:DDB0233461
GeneID:8621256 KEGG:ddi:DDB_G0277977 eggNOG:NOG289100 KO:K12867
OMA:PRSYKLW ProtClustDB:CLSZ2729105 Uniprot:Q54Z08
Length = 850
Score = 791 (283.5 bits), Expect = 1.8e-131, Sum P(2) = 1.8e-131
Identities = 144/282 (51%), Positives = 206/282 (73%)
Query: 22 RNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITH 81
+NP+S+ W RYL K+ +P K+R IYERA++ LP SYK+WH YL+ER ++ I
Sbjct: 40 KNPYSVNCWLRYLEFKQGSPQKQRNYIYERAIRELPRSYKIWHQYLLERTLAIRGKCILE 99
Query: 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIW 141
+E +N FER+LV + KMPRIWI Y E L Q+ IT R+TFDRAL ALPVTQH RIW
Sbjct: 100 NSFEAVNTLFERSLVFLDKMPRIWIEYCEFLMIQEKITLTRKTFDRALIALPVTQHYRIW 159
Query: 142 EIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQ 201
Y +F+ + IP T +RVY+RYLK P +E++IE+L+K K WQE +L +L++ +
Sbjct: 160 NEYTKFILKRSIPSLTCIRVYKRYLKIQPEKVEEYIEYLIKIKEWQEVVNQLIKLLDNVK 219
Query: 202 FYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIR 261
F SIKGK++H WL+LC++L+++ +I+G++VD++IR GI KF+D++G+LW L+DYYI+
Sbjct: 220 FKSIKGKSRHDHWLQLCEILSSYPKQITGVDVDSVIRSGIGKFSDQIGKLWCYLSDYYIQ 279
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAK 303
FEKARDIFEE + +V T RDFS I++SY+QFE+ +++AK
Sbjct: 280 LAQFEKARDIFEEALTSVGTARDFSFIWESYTQFEDSLIAAK 321
Score = 519 (187.8 bits), Expect = 1.8e-131, Sum P(2) = 1.8e-131
Identities = 91/211 (43%), Positives = 155/211 (73%)
Query: 354 DVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPT---KQIL-TYTEA 409
+ D+ + R E+L+ R+P L NSV+L+QNP+NV++W +RV ++ NPT K I+ T+T++
Sbjct: 336 EFDIIIERYENLIQRQPLLLNSVMLKQNPNNVQEWLKRVNLYS-NPTPNVKMIIQTFTDS 394
Query: 410 VRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAE 469
++++DP A GK T++ FA YE ++ AR+IF+ ++ VN+KT+D L++++C++AE
Sbjct: 395 IKSIDPQLAKGKLSTIYSTFAHFYEQNNKLSQARLIFENSLTVNFKTIDDLSTLYCDYAE 454
Query: 470 MELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLG 529
MEL+H+N++ A+E+++R T P ++ + NEPVQ +L KS+++WTFYVDLEES G
Sbjct: 455 MELKHRNYEKAIEILKRGTVSPK---KQNTIIEENEPVQKRLFKSIKIWTFYVDLEESFG 511
Query: 530 NLESTRAVYERILDLRIATPQIIINYALLLE 560
+T+++YE+++ L++ TPQII+N+A LE
Sbjct: 512 TFHNTKSIYEKMIQLKVVTPQIILNFAKYLE 542
Score = 68 (29.0 bits), Expect = 7.3e-84, Sum P(2) = 7.3e-84
Identities = 27/104 (25%), Positives = 46/104 (44%)
Query: 389 HRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDK 448
HR + F N T++I +++A+ + P + V + + FA + + Y +I AR I+
Sbjct: 650 HRASEFFGVNQTREI--FSKAIEQL-PDQYV---RDMCLKFADMEKKYGEIDRARSIYIH 703
Query: 449 AVQVNYKTVDHLASIWCEWAEMELRHKN---FKGALELMRRATA 489
Q + W W++ E H N FK L + R A
Sbjct: 704 GSQFSDPRTSMF--YWNTWSDFEKLHGNEDTFKEMLRIRRSVQA 745
Score = 49 (22.3 bits), Expect = 7.4e-82, Sum P(2) = 7.4e-82
Identities = 17/85 (20%), Positives = 37/85 (43%)
Query: 454 YKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHK 513
Y H +++ A+ + FK L + RA+ V R + + E + + +
Sbjct: 619 YGLARHSMAVYDRAAKSVDKEDRFKMYLLYIHRASEFFGVNQTREIFSKAIEQLPDQYVR 678
Query: 514 SLRLWTFYVDLEESLGNLESTRAVY 538
+ L + D+E+ G ++ R++Y
Sbjct: 679 DMCLK--FADMEKKYGEIDRARSIY 701
Score = 45 (20.9 bits), Expect = 1.9e-81, Sum P(2) = 1.9e-81
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 513 KSLRLWTFYVDLEESLGNLESTRAVYER 540
+S+ + Y + EE G + AVY+R
Sbjct: 604 ESIIFYLMYANFEEQYGLARHSMAVYDR 631
>WB|WBGene00016837 [details] [associations]
symbol:C50F2.3 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR019734
Pfam:PF13181 SMART:SM00386 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000003 GO:GO:0005622
GO:GO:0006396 GO:GO:0000910 Gene3D:1.25.40.10 InterPro:IPR013105
Pfam:PF07719 GO:GO:0001703 eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW
HOGENOM:HOG000176133 GeneTree:ENSGT00550000075140 EMBL:FO080915
PIR:T29775 RefSeq:NP_491250.1 ProteinModelPortal:P91175 SMR:P91175
IntAct:P91175 STRING:P91175 PaxDb:P91175 EnsemblMetazoa:C50F2.3.1
EnsemblMetazoa:C50F2.3.2 GeneID:171970 KEGG:cel:CELE_C50F2.3
UCSC:C50F2.3 CTD:171970 WormBase:C50F2.3 InParanoid:P91175
NextBio:873471 Uniprot:P91175
Length = 855
Score = 737 (264.5 bits), Expect = 6.6e-79, Sum P(2) = 6.6e-79
Identities = 169/438 (38%), Positives = 244/438 (55%)
Query: 22 RNPFSLKLWWRYLVAK--REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPI 79
RNP S+ W RY+ K ++P K+ F+IYERAL SYKLW+ YL R S + N
Sbjct: 35 RNPTSVNCWQRYIDHKLQNKSPAKQMFLIYERALAVFERSYKLWYHYLKYRESTIVNKCP 94
Query: 80 THPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDR 139
T + L +T+ER L+ +HKMPRIWI Y E + + IT+ RR FDRAL +LPVTQH R
Sbjct: 95 TDNSWRALCDTYERCLMRLHKMPRIWICYCEVMIKRGLITETRRVFDRALRSLPVTQHMR 154
Query: 140 IWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLND 199
IW +Y+ F+ +P ET++RVYRRYLK +P ED++E+L++ EAA+ L +++N
Sbjct: 155 IWTLYIGFLTSHDLP-ETTIRVYRRYLKMNPKAREDYVEYLIERDQIDEAAKELTTLVNQ 213
Query: 200 DQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYY 259
DQ S KG+T H+LW +LCDL++ + +I LNVDAIIR GI ++TD+VG LW SLADYY
Sbjct: 214 DQNVSEKGRTAHQLWTQLCDLISKNPVKIFSLNVDAIIRQGIYRYTDQVGFLWCSLADYY 273
Query: 260 IRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVXXXXXXXX 319
IR FE+ARD++EE + V TVRDF+ ++D+Y+ FEE VS M + + S
Sbjct: 274 IRSAEFERARDVYEEAIAKVSTVRDFAQVYDAYAAFEEREVSIMMQEVEQSGDPEEEVDL 333
Query: 320 XXXXXXXXIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLR 379
++ E + VL H+V + R+ E N++ E +
Sbjct: 334 EWMFQRYQHLME---RKNELMNSVLLRQNPHNVGEWLNRVNIYEGNYNKQIETFKEAVKS 390
Query: 380 QNPH-NV----EQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYE 434
NP V + W K++E N T + V + +W A+A++
Sbjct: 391 VNPKIQVGKVRDLWIGLAKLYEDNGDLDAARKTFETAVISQFGGVSELANVWCAYAEMEM 450
Query: 435 TYKDIANARVIFDKAVQV 452
+K A + +A V
Sbjct: 451 KHKRAKAALTVMQRACVV 468
Score = 519 (187.8 bits), Expect = 3.2e-52, Sum P(2) = 3.2e-52
Identities = 164/534 (30%), Positives = 258/534 (48%)
Query: 47 VIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWI 106
V +E + P S W Y+ +L P + + +ERAL + ++W
Sbjct: 27 VPFEEDIIRNPTSVNCWQRYIDHKLQ--NKSPA-----KQMFLIYERALAVFERSYKLWY 79
Query: 107 MYLE----TLTSQKFITKARR----TFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETS 158
YL+ T+ ++ + R T++R C + + + RIW Y + + G+ ET
Sbjct: 80 HYLKYRESTIVNKCPTDNSWRALCDTYER--CLMRLHKMPRIWICYCEVMIKRGLITETR 137
Query: 159 LRVYRRYLKYDP--SHIED---FIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRL 213
RV+ R L+ P H+ +I FL L + L + K + +
Sbjct: 138 -RVFDRALRSLPVTQHMRIWTLYIGFLTSHDLPETTIRVYRRYLKMNP----KAREDYVE 192
Query: 214 WLELCDLLTTHATEISGL-NVDAIIRGGIRKFTDEVGRLWTSLADYYIRR--ELFEKARD 270
+L D + A E++ L N D + R +LWT L D + ++F D
Sbjct: 193 YLIERDQIDEAAKELTTLVNQDQNVSEKGRT----AHQLWTQLCDLISKNPVKIFSLNVD 248
Query: 271 -IFEEGMMTVVTVRDF--SVIFDSYSQFEEIMVSAKMAKPDLS-VXXXXXXXXXXXXXXX 326
I +G+ F + D Y + E + + + ++ V
Sbjct: 249 AIIRQGIYRYTDQVGFLWCSLADYYIRSAEFERARDVYEEAIAKVSTVRDFAQVYDAYAA 308
Query: 327 XIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVE 386
+V++ M E V++ +G +V D++ R +HLM R+ EL NSVLLRQNPHNV
Sbjct: 309 FEEREVSIMMQE-VEQ--SGDPEEEV-DLEWMFQRYQHLMERKNELMNSVLLRQNPHNVG 364
Query: 387 QWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIF 446
+W RV I+EGN KQI T+ EAV++V+P VGK LW+ AKLYE D+ AR F
Sbjct: 365 EWLNRVNIYEGNYNKQIETFKEAVKSVNPKIQVGKVRDLWIGLAKLYEDNGDLDAARKTF 424
Query: 447 DKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEP 506
+ AV + V LA++WC +AEME++HK K AL +M+RA P + + +
Sbjct: 425 ETAVISQFGGVSELANVWCAYAEMEMKHKRAKAALTVMQRACVVP-----KPGDYENMQS 479
Query: 507 VQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLE 560
VQ ++H+S LW Y D EE G +ES R VY+++++LR+A+PQ+I+NYA+ LE
Sbjct: 480 VQARVHRSPILWAMYADYEECCGTVESCRKVYDKMIELRVASPQMIMNYAMFLE 533
Score = 75 (31.5 bits), Expect = 6.6e-79, Sum P(2) = 6.6e-79
Identities = 21/76 (27%), Positives = 36/76 (47%)
Query: 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGA 480
K + + +A+L T +I AR I+ A +++ V H+ W W E+ H N
Sbjct: 667 KSRAMSLRYAQLETTVGEIDRARAIYAHAAEISDPKV-HV-KFWDTWKNFEVAHGNEATV 724
Query: 481 LELMR-RATAEPSVEV 495
+++R R + E S V
Sbjct: 725 RDMLRVRRSVEASYNV 740
Score = 52 (23.4 bits), Expect = 1.8e-76, Sum P(2) = 1.8e-76
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINY 555
KS + Y LE ++G ++ RA+Y + I+ P++ + +
Sbjct: 667 KSRAMSLRYAQLETTVGEIDRARAIYAHAAE--ISDPKVHVKF 707
Score = 44 (20.5 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
Identities = 16/76 (21%), Positives = 33/76 (43%)
Query: 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALE 482
H+++ + K + IA R IF++A+ + S+ +A++E A
Sbjct: 633 HSMYNIYIKKVQEMYGIAQCRPIFERAISELPEDKSRAMSL--RYAQLETTVGEIDRARA 690
Query: 483 LMRRAT--AEPSVEVR 496
+ A ++P V V+
Sbjct: 691 IYAHAAEISDPKVHVK 706
>UNIPROTKB|P91175 [details] [associations]
symbol:C50F2.3 "Protein C50F2.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR019734 Pfam:PF13181 SMART:SM00386 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000003
GO:GO:0005622 GO:GO:0006396 GO:GO:0000910 Gene3D:1.25.40.10
InterPro:IPR013105 Pfam:PF07719 GO:GO:0001703 eggNOG:NOG289100
KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133
GeneTree:ENSGT00550000075140 EMBL:FO080915 PIR:T29775
RefSeq:NP_491250.1 ProteinModelPortal:P91175 SMR:P91175
IntAct:P91175 STRING:P91175 PaxDb:P91175 EnsemblMetazoa:C50F2.3.1
EnsemblMetazoa:C50F2.3.2 GeneID:171970 KEGG:cel:CELE_C50F2.3
UCSC:C50F2.3 CTD:171970 WormBase:C50F2.3 InParanoid:P91175
NextBio:873471 Uniprot:P91175
Length = 855
Score = 737 (264.5 bits), Expect = 6.6e-79, Sum P(2) = 6.6e-79
Identities = 169/438 (38%), Positives = 244/438 (55%)
Query: 22 RNPFSLKLWWRYLVAK--REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPI 79
RNP S+ W RY+ K ++P K+ F+IYERAL SYKLW+ YL R S + N
Sbjct: 35 RNPTSVNCWQRYIDHKLQNKSPAKQMFLIYERALAVFERSYKLWYHYLKYRESTIVNKCP 94
Query: 80 THPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDR 139
T + L +T+ER L+ +HKMPRIWI Y E + + IT+ RR FDRAL +LPVTQH R
Sbjct: 95 TDNSWRALCDTYERCLMRLHKMPRIWICYCEVMIKRGLITETRRVFDRALRSLPVTQHMR 154
Query: 140 IWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLND 199
IW +Y+ F+ +P ET++RVYRRYLK +P ED++E+L++ EAA+ L +++N
Sbjct: 155 IWTLYIGFLTSHDLP-ETTIRVYRRYLKMNPKAREDYVEYLIERDQIDEAAKELTTLVNQ 213
Query: 200 DQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYY 259
DQ S KG+T H+LW +LCDL++ + +I LNVDAIIR GI ++TD+VG LW SLADYY
Sbjct: 214 DQNVSEKGRTAHQLWTQLCDLISKNPVKIFSLNVDAIIRQGIYRYTDQVGFLWCSLADYY 273
Query: 260 IRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVXXXXXXXX 319
IR FE+ARD++EE + V TVRDF+ ++D+Y+ FEE VS M + + S
Sbjct: 274 IRSAEFERARDVYEEAIAKVSTVRDFAQVYDAYAAFEEREVSIMMQEVEQSGDPEEEVDL 333
Query: 320 XXXXXXXXIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLR 379
++ E + VL H+V + R+ E N++ E +
Sbjct: 334 EWMFQRYQHLME---RKNELMNSVLLRQNPHNVGEWLNRVNIYEGNYNKQIETFKEAVKS 390
Query: 380 QNPH-NV----EQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYE 434
NP V + W K++E N T + V + +W A+A++
Sbjct: 391 VNPKIQVGKVRDLWIGLAKLYEDNGDLDAARKTFETAVISQFGGVSELANVWCAYAEMEM 450
Query: 435 TYKDIANARVIFDKAVQV 452
+K A + +A V
Sbjct: 451 KHKRAKAALTVMQRACVV 468
Score = 519 (187.8 bits), Expect = 3.2e-52, Sum P(2) = 3.2e-52
Identities = 164/534 (30%), Positives = 258/534 (48%)
Query: 47 VIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWI 106
V +E + P S W Y+ +L P + + +ERAL + ++W
Sbjct: 27 VPFEEDIIRNPTSVNCWQRYIDHKLQ--NKSPA-----KQMFLIYERALAVFERSYKLWY 79
Query: 107 MYLE----TLTSQKFITKARR----TFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETS 158
YL+ T+ ++ + R T++R C + + + RIW Y + + G+ ET
Sbjct: 80 HYLKYRESTIVNKCPTDNSWRALCDTYER--CLMRLHKMPRIWICYCEVMIKRGLITETR 137
Query: 159 LRVYRRYLKYDP--SHIED---FIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRL 213
RV+ R L+ P H+ +I FL L + L + K + +
Sbjct: 138 -RVFDRALRSLPVTQHMRIWTLYIGFLTSHDLPETTIRVYRRYLKMNP----KAREDYVE 192
Query: 214 WLELCDLLTTHATEISGL-NVDAIIRGGIRKFTDEVGRLWTSLADYYIRR--ELFEKARD 270
+L D + A E++ L N D + R +LWT L D + ++F D
Sbjct: 193 YLIERDQIDEAAKELTTLVNQDQNVSEKGRT----AHQLWTQLCDLISKNPVKIFSLNVD 248
Query: 271 -IFEEGMMTVVTVRDF--SVIFDSYSQFEEIMVSAKMAKPDLS-VXXXXXXXXXXXXXXX 326
I +G+ F + D Y + E + + + ++ V
Sbjct: 249 AIIRQGIYRYTDQVGFLWCSLADYYIRSAEFERARDVYEEAIAKVSTVRDFAQVYDAYAA 308
Query: 327 XIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVE 386
+V++ M E V++ +G +V D++ R +HLM R+ EL NSVLLRQNPHNV
Sbjct: 309 FEEREVSIMMQE-VEQ--SGDPEEEV-DLEWMFQRYQHLMERKNELMNSVLLRQNPHNVG 364
Query: 387 QWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIF 446
+W RV I+EGN KQI T+ EAV++V+P VGK LW+ AKLYE D+ AR F
Sbjct: 365 EWLNRVNIYEGNYNKQIETFKEAVKSVNPKIQVGKVRDLWIGLAKLYEDNGDLDAARKTF 424
Query: 447 DKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEP 506
+ AV + V LA++WC +AEME++HK K AL +M+RA P + + +
Sbjct: 425 ETAVISQFGGVSELANVWCAYAEMEMKHKRAKAALTVMQRACVVP-----KPGDYENMQS 479
Query: 507 VQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLE 560
VQ ++H+S LW Y D EE G +ES R VY+++++LR+A+PQ+I+NYA+ LE
Sbjct: 480 VQARVHRSPILWAMYADYEECCGTVESCRKVYDKMIELRVASPQMIMNYAMFLE 533
Score = 75 (31.5 bits), Expect = 6.6e-79, Sum P(2) = 6.6e-79
Identities = 21/76 (27%), Positives = 36/76 (47%)
Query: 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGA 480
K + + +A+L T +I AR I+ A +++ V H+ W W E+ H N
Sbjct: 667 KSRAMSLRYAQLETTVGEIDRARAIYAHAAEISDPKV-HV-KFWDTWKNFEVAHGNEATV 724
Query: 481 LELMR-RATAEPSVEV 495
+++R R + E S V
Sbjct: 725 RDMLRVRRSVEASYNV 740
Score = 52 (23.4 bits), Expect = 1.8e-76, Sum P(2) = 1.8e-76
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINY 555
KS + Y LE ++G ++ RA+Y + I+ P++ + +
Sbjct: 667 KSRAMSLRYAQLETTVGEIDRARAIYAHAAE--ISDPKVHVKF 707
Score = 44 (20.5 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
Identities = 16/76 (21%), Positives = 33/76 (43%)
Query: 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALE 482
H+++ + K + IA R IF++A+ + S+ +A++E A
Sbjct: 633 HSMYNIYIKKVQEMYGIAQCRPIFERAISELPEDKSRAMSL--RYAQLETTVGEIDRARA 690
Query: 483 LMRRAT--AEPSVEVR 496
+ A ++P V V+
Sbjct: 691 IYAHAAEISDPKVHVK 706
>POMBASE|SPBC211.02c [details] [associations]
symbol:cwf3 "complexed with Cdc5 protein Cwf3"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0044732 "mitotic spindle
pole body" evidence=IDA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IC] InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF05843 SMART:SM00386 PomBase:SPBC211.02c
GO:GO:0005829 GO:GO:0044732 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0005681 GO:GO:0007049 Gene3D:1.25.40.10 GO:GO:0045292
eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133
OrthoDB:EOG4DBXP7 EMBL:AF251149 PIR:T50337 RefSeq:NP_596612.1
ProteinModelPortal:Q9P7R9 IntAct:Q9P7R9 STRING:Q9P7R9
EnsemblFungi:SPBC211.02c.1 GeneID:2540753 KEGG:spo:SPBC211.02c
NextBio:20801873 Uniprot:Q9P7R9
Length = 790
Score = 692 (248.7 bits), Expect = 9.7e-72, Sum P(2) = 9.7e-72
Identities = 179/557 (32%), Positives = 303/557 (54%)
Query: 22 RNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNL-PIT 80
R+P+SLK W RY+ + +KR +++ERA LPGSYK+W +YL R++ V++L P
Sbjct: 27 RDPYSLKSWLRYIKTHEGSTLEKRVLLFERACSELPGSYKIWKSYLELRVAHVEHLNPYF 86
Query: 81 HPE-YETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDR 139
H E + ++N+ FER+L+ +HKMP IW +YL+ L Q +TK R TF+ AL ALPVTQHD
Sbjct: 87 HAEAFASVNDCFERSLILLHKMPVIWKLYLQFLMKQPNVTKIRCTFNSALRALPVTQHDD 146
Query: 140 IWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLND 199
IW+++ ++ E G + VYRRY++ +P IE++IE L K LW EAA + +LN
Sbjct: 147 IWDMFTKYAEDIGGLF--CIHVYRRYIQVEPRAIENYIEILCKLGLWNEAARQYEDILNR 204
Query: 200 DQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYY 259
F S K K+ +++WLE +L+ H ++V+ + R GI++F+D+ G+LWT LA YY
Sbjct: 205 PVFLSAKRKSNYQIWLEFSELVVQHPDHTQNIDVEKVFRAGIKRFSDQAGKLWTYLAQYY 264
Query: 260 IRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKM------AKPDLSVXX 313
IR +EKAR F EGM ++TVR+F++IFD++ +FEE +SA++ A +LS+
Sbjct: 265 IRIGDYEKARSTFYEGMNNIMTVRNFTIIFDAFVEFEEQWLSARVEASSGNANDELSIDF 324
Query: 314 XXXXXXXXXXXXXXIRLDVNLSMAEFVKKVLNGFWLHDVK---DVDLRLARL--EHLMNR 368
DV L + + V WL VK D ++ ++ + + N
Sbjct: 325 HMAWLEKILDKRPLYINDVLLR--QNINNVDE--WLRRVKFLEDDSEKVVQVYTDAIKNV 380
Query: 369 RPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVA 428
P+LA+ L + ++ R + F+ +I+ + +A P K V + +W+
Sbjct: 381 NPKLAHGSLGKL----FSEFARFYENFDDLEQSRII-FEKATHV--PYKTVNELAQVWID 433
Query: 429 FAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELR-HKNFKGALELMRRA 487
+A++ +++ AR + AV K+ H+ S + E ++R HK+ K + +
Sbjct: 434 WAEMELRHQNFDAARKLIGDAVHAPRKS--HI-SFFDESLSPQVRLHKSSKIWMYYLDLE 490
Query: 488 TAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA 547
+ ++E R++ + ++K+ + ++ Y +L E E + +YER +A
Sbjct: 491 ESVGTIETTRKLY---DRVFELKI-ATPQVVVNYANLLEENAYFEDSFKIYER----GVA 542
Query: 548 TPQIIINYALLLEVWTL 564
+ +Y + E+W L
Sbjct: 543 ----LFSYPVAFELWNL 555
Score = 52 (23.4 bits), Expect = 9.7e-72, Sum P(2) = 9.7e-72
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLL 559
S ++ Y D EE G + + ++ E+ D ++ T + Y +LL
Sbjct: 588 SKSIYLLYADFEEKFGKAKRSISILEKAAD-KVKTADRLAIYNVLL 632
>ASPGD|ASPL0000052140 [details] [associations]
symbol:AN0111 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF13181 SMART:SM00386 GO:GO:0008380 EMBL:BN001308
GO:GO:0006397 GO:GO:0005681 GO:GO:0007049 Gene3D:1.25.40.10
EMBL:AACD01000004 eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW
RefSeq:XP_657715.1 ProteinModelPortal:Q5BH69 STRING:Q5BH69
EnsemblFungi:CADANIAT00002638 GeneID:2875887 KEGG:ani:AN0111.2
HOGENOM:HOG000176133 OrthoDB:EOG4DBXP7 Uniprot:Q5BH69
Length = 851
Score = 633 (227.9 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
Identities = 176/539 (32%), Positives = 279/539 (51%)
Query: 46 FVIYERALKALPGSYKLWHAYLIERLSIVKNL-PITH-PEYETLNNTFERALVTMHKMPR 103
F + ERA K LP SYKLW YL R +KN I + E++ +N FERAL+ ++KMPR
Sbjct: 69 FQVMERACKQLPRSYKLWKMYLEFRTKHLKNRNAIKYRAEFQKVNTLFERALILLNKMPR 128
Query: 104 IWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYR 163
IW MYL + Q +T+ RRTFDRAL ALPVTQH+RIW++Y F +T+++++
Sbjct: 129 IWEMYLTFMLQQPLVTQTRRTFDRALRALPVTQHNRIWKLYKTFARSASG--QTAVKIWA 186
Query: 164 RYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTT 223
RY++ P + E++I LV+ + +A +R +L++ +F S +GK+ +LW E+ DLL +
Sbjct: 187 RYMQIHPENAEEYINLLVEMGHYTDAIKRYMEILDNPRFQSREGKSNFQLWTEMVDLLVS 246
Query: 224 HATEI-----SGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMT 278
A +I +G++VDAI+R GI +F D+ G+LW LA Y+I + FEKARD+FEEG+ T
Sbjct: 247 KAKKIETGPQTGIDVDAILRSGIDRFADQRGKLWAGLATYWITKGNFEKARDVFEEGITT 306
Query: 279 VVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVXXXXXXXXXXXXXXXX-IRLDVNLSMA 337
V+TVRDF++IFDSY +FEE ++ + M + +R + +
Sbjct: 307 VMTVRDFTLIFDSYVEFEESIIGSLMEAAAVRADNGKADEEADFDLDLRMLRFEQLMDRR 366
Query: 338 EF-VKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANS---VLLRQNPHNV-----EQW 388
F V VL ++V + + R+A + E+ N+ + NP E W
Sbjct: 367 PFLVNDVLLRQNPNNVIEWEKRVALWG---DNNVEIVNTYTAAIAAINPKKAVGKFSELW 423
Query: 389 HRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIF 446
K +E G+ + + +AV+ P K+V + W +A++ ++ A I
Sbjct: 424 VNYAKFYERGGDLDTARIIFEKAVKV--PFKSVNELAETWCEWAEMELRSENFDKAVEIM 481
Query: 447 DKAVQVNYK-TVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNE 505
KA Q K TVD+ + + HK++K + + S+E ++V
Sbjct: 482 AKATQAPKKSTVDYFDETL---SPQQRIHKSWKLWSFYVDLVESVSSIEETKKVY---ER 535
Query: 506 PVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTL 564
++++ + Y +L E E + VYER LDL Y + E+W L
Sbjct: 536 IFELRIATPQTVVN-YANLLEEHKYFEESFKVYERGLDL--------FTYPVAFELWNL 585
Score = 49 (22.3 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 517 LWTFYVDLEESLGNLESTRAVYERIL 542
++ FY+ S L STR +YER +
Sbjct: 655 MFEFYITKSASNFGLPSTRPIYERAI 680
>GENEDB_PFALCIPARUM|PFL1735c [details] [associations]
symbol:PFL1735c "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003107 SMART:SM00386
GO:GO:0005622 GO:GO:0006396 EMBL:AE014188 KO:K12867
RefSeq:XP_001350753.1 ProteinModelPortal:Q8I564
EnsemblProtists:PFL1735c:mRNA GeneID:811399 KEGG:pfa:PFL1735c
EuPathDB:PlasmoDB:PF3D7_1235900 HOGENOM:HOG000283457 Uniprot:Q8I564
Length = 1031
Score = 273 (101.2 bits), Expect = 3.1e-33, Sum P(3) = 3.1e-33
Identities = 72/273 (26%), Positives = 141/273 (51%)
Query: 37 KREAPFKKR----FVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPE-YETLNNTF 91
K++ KKR F IY LK P S+KLW+ Y+ + + ++ ++ + + Y+ +N F
Sbjct: 179 KKKKKKKKRVYDLFCIYAIILKYFPYSFKLWYHYIKDSIEMITDVYYRNKKNYKYINKIF 238
Query: 92 ERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQE 151
++ L+ M+ I+IMY++ L Q+ + K R+ F+ +L + + Q + +WE L F E+
Sbjct: 239 DQCLLYMYNFKSIYIMYIQFLYIQRDVKKIRQIFNLSLQNVYLNQQNDLWECQLLFNEKI 298
Query: 152 GIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKH 211
+ + +RY+ P I + VK K+++ A +LN + + + +K+
Sbjct: 299 NNKV-INYEYIKRYVTIYPEQIIHLFKHYVKYKMYKNAMITFFYILNSEDNFDLGNFSKY 357
Query: 212 RLWLELCDLLTTHATEISGLNVDAI--IRGGIRKFT--DEVGRLWTSLADYYIRRELFEK 267
++ E+ LL + + LN D I +R + F + + ++ LA+ +I + K
Sbjct: 358 DIYQEIYKLLNSKGS----LNNDIIHLLRNNLYIFKNYESITSIYILLANNFIYDGRWNK 413
Query: 268 ARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMV 300
A D +EEG+ TV DF +FD+Y + ++++
Sbjct: 414 AMDSYEEGISECYTVNDFITLFDNYIEMLKMLI 446
Score = 165 (63.1 bits), Expect = 3.1e-33, Sum P(3) = 3.1e-33
Identities = 36/133 (27%), Positives = 72/133 (54%)
Query: 355 VDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVD 414
+DL + ++ +L+++R + L+ N +NV W ++ N ++I Y E++R +
Sbjct: 547 IDLYMDKINYLLDQRKTYIADIKLKNNKNNVYIWLSKIDSII-NEEEKIHLYDESLRYFE 605
Query: 415 PMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVN--YKTVDHLASIWCEWAEMEL 472
GK +++++A Y + N IF A++ N +K+ + +A+I+C W E+EL
Sbjct: 606 KNDYTGKLSDIYISYAYYYYNKNEYTNCINIFKLALKQNAYFKSANEIANIFCAWIEIEL 665
Query: 473 RHKNFKGALELMR 485
+N+K AL + R
Sbjct: 666 LERNYKEALNIAR 678
Score = 51 (23.0 bits), Expect = 3.1e-33, Sum P(3) = 3.1e-33
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 505 EPVQMKLHKSLR-LWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINY 555
E +Q S R L Y+D+E L E RA+Y I + P + +++
Sbjct: 902 EAIQTLSDDSARQLCMIYIDMEYKLNEYERVRALY--IYTAQYTNPLLYMDF 951
Score = 51 (23.0 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 19/129 (14%), Positives = 54/129 (41%)
Query: 433 YETYKDIAN--ARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE 490
+++ +IAN I + ++ NYK ++A + +++ K++ +
Sbjct: 647 FKSANEIANIFCAWIEIELLERNYKEALNIARL-----SIDINKKSYNTLYKSSTSILLY 701
Query: 491 PSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550
+ + + N L ++L + +D+E + G +E+T +++ + +
Sbjct: 702 EDISLNNNLKNKNNYHTNFNLLSCMKLVSLIIDMEMNYGTIETTLNMFDFFYHSKCINVK 761
Query: 551 IIINYALLL 559
+++ A L
Sbjct: 762 MVLTLATYL 770
Score = 45 (20.9 bits), Expect = 7.3e-09, Sum P(3) = 7.3e-09
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 24 PFSLKLWWRYL 34
P+S KLW+ Y+
Sbjct: 203 PYSFKLWYHYI 213
>UNIPROTKB|Q8I564 [details] [associations]
symbol:PFL1735c "RNA-processing protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003107 SMART:SM00386
GO:GO:0005622 GO:GO:0006396 EMBL:AE014188 KO:K12867
RefSeq:XP_001350753.1 ProteinModelPortal:Q8I564
EnsemblProtists:PFL1735c:mRNA GeneID:811399 KEGG:pfa:PFL1735c
EuPathDB:PlasmoDB:PF3D7_1235900 HOGENOM:HOG000283457 Uniprot:Q8I564
Length = 1031
Score = 273 (101.2 bits), Expect = 3.1e-33, Sum P(3) = 3.1e-33
Identities = 72/273 (26%), Positives = 141/273 (51%)
Query: 37 KREAPFKKR----FVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPE-YETLNNTF 91
K++ KKR F IY LK P S+KLW+ Y+ + + ++ ++ + + Y+ +N F
Sbjct: 179 KKKKKKKKRVYDLFCIYAIILKYFPYSFKLWYHYIKDSIEMITDVYYRNKKNYKYINKIF 238
Query: 92 ERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQE 151
++ L+ M+ I+IMY++ L Q+ + K R+ F+ +L + + Q + +WE L F E+
Sbjct: 239 DQCLLYMYNFKSIYIMYIQFLYIQRDVKKIRQIFNLSLQNVYLNQQNDLWECQLLFNEKI 298
Query: 152 GIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKH 211
+ + +RY+ P I + VK K+++ A +LN + + + +K+
Sbjct: 299 NNKV-INYEYIKRYVTIYPEQIIHLFKHYVKYKMYKNAMITFFYILNSEDNFDLGNFSKY 357
Query: 212 RLWLELCDLLTTHATEISGLNVDAI--IRGGIRKFT--DEVGRLWTSLADYYIRRELFEK 267
++ E+ LL + + LN D I +R + F + + ++ LA+ +I + K
Sbjct: 358 DIYQEIYKLLNSKGS----LNNDIIHLLRNNLYIFKNYESITSIYILLANNFIYDGRWNK 413
Query: 268 ARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMV 300
A D +EEG+ TV DF +FD+Y + ++++
Sbjct: 414 AMDSYEEGISECYTVNDFITLFDNYIEMLKMLI 446
Score = 165 (63.1 bits), Expect = 3.1e-33, Sum P(3) = 3.1e-33
Identities = 36/133 (27%), Positives = 72/133 (54%)
Query: 355 VDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVD 414
+DL + ++ +L+++R + L+ N +NV W ++ N ++I Y E++R +
Sbjct: 547 IDLYMDKINYLLDQRKTYIADIKLKNNKNNVYIWLSKIDSII-NEEEKIHLYDESLRYFE 605
Query: 415 PMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVN--YKTVDHLASIWCEWAEMEL 472
GK +++++A Y + N IF A++ N +K+ + +A+I+C W E+EL
Sbjct: 606 KNDYTGKLSDIYISYAYYYYNKNEYTNCINIFKLALKQNAYFKSANEIANIFCAWIEIEL 665
Query: 473 RHKNFKGALELMR 485
+N+K AL + R
Sbjct: 666 LERNYKEALNIAR 678
Score = 51 (23.0 bits), Expect = 3.1e-33, Sum P(3) = 3.1e-33
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 505 EPVQMKLHKSLR-LWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINY 555
E +Q S R L Y+D+E L E RA+Y I + P + +++
Sbjct: 902 EAIQTLSDDSARQLCMIYIDMEYKLNEYERVRALY--IYTAQYTNPLLYMDF 951
Score = 51 (23.0 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 19/129 (14%), Positives = 54/129 (41%)
Query: 433 YETYKDIAN--ARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE 490
+++ +IAN I + ++ NYK ++A + +++ K++ +
Sbjct: 647 FKSANEIANIFCAWIEIELLERNYKEALNIARL-----SIDINKKSYNTLYKSSTSILLY 701
Query: 491 PSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550
+ + + N L ++L + +D+E + G +E+T +++ + +
Sbjct: 702 EDISLNNNLKNKNNYHTNFNLLSCMKLVSLIIDMEMNYGTIETTLNMFDFFYHSKCINVK 761
Query: 551 IIINYALLL 559
+++ A L
Sbjct: 762 MVLTLATYL 770
Score = 45 (20.9 bits), Expect = 7.3e-09, Sum P(3) = 7.3e-09
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 24 PFSLKLWWRYL 34
P+S KLW+ Y+
Sbjct: 203 PYSFKLWYHYI 213
>CGD|CAL0005248 [details] [associations]
symbol:orf19.2893 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0071007 "U2-type catalytic
step 2 spliceosome" evidence=IEA] [GO:0071004 "U2-type
prespliceosome" evidence=IEA] [GO:0071006 "U2-type catalytic step 1
spliceosome" evidence=IEA] [GO:0071008 "U2-type post-mRNA release
spliceosomal complex" evidence=IEA] [GO:0000974 "Prp19 complex"
evidence=IEA] [GO:0000349 "generation of catalytic spliceosome for
first transesterification step" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 CGD:CAL0005248 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 EMBL:AACQ01000084 EMBL:AACQ01000083
InterPro:IPR013633 Pfam:PF08424 eggNOG:NOG289100 KO:K12867
RefSeq:XP_715549.1 RefSeq:XP_715605.1 ProteinModelPortal:Q5A1C6
STRING:Q5A1C6 GeneID:3642755 GeneID:3642796 KEGG:cal:CaO19.10411
KEGG:cal:CaO19.2893 Uniprot:Q5A1C6
Length = 845
Score = 284 (105.0 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 71/223 (31%), Positives = 116/223 (52%)
Query: 357 LRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQ----ILTYTEAVRT 412
L L E L++ R L N + LRQN ++++ W R +I E I T T+A+++
Sbjct: 341 LYLDDFEKLIDDRKILLNDMKLRQNINDLDTWFERFEIIETQTPDDLNLLIQTLTQALKS 400
Query: 413 VDPMKAV----GKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWA 468
++P+K V K +W+ + +Y + D A +IF K+V Y D LA ++ W+
Sbjct: 401 INPLKVVTTNNSKLSGIWLKYVDIYSSRGDFQTADLIFSKSVLSQYIDPDELAELYINWS 460
Query: 469 EMELRHKNFKG--ALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEE 526
EM L F A+E++ ++ D ++PVQ ++ KS++LW FY+DL E
Sbjct: 461 EMILGSDKFPETKAIEILDDILYREYSDINY---TDNSKPVQQRIIKSIKLWNFYIDLLE 517
Query: 527 S-------LGNLESTRAVYERILDLRIATPQIIINYALLLEVW 562
S L +E Y+ ++ L+IATP+I+IN+A LE W
Sbjct: 518 SFIESDNQLKEIEKVTNAYQHLIKLKIATPRIMINFAQFLESW 560
Score = 151 (58.2 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 47/165 (28%), Positives = 87/165 (52%)
Query: 22 RNPFSLKLWWRYLVAKREAP-----FKKRFVIYERALKALPGSYKLWHAYLIERLSIVKN 76
++P ++ W Y K A + K F++Y R++K+ P S +LW LI+ L +++
Sbjct: 22 KDPTNISTWISYYNFKSNATSTTSLYNKLFILY-RSVKSNPTSIELWQL-LID-LVLLEQ 78
Query: 77 LPITHPEYETLNNTFERALVTMHKMPRIWIMYLE--TLTSQ-----KF----ITKARRTF 125
I + +T+ FE AL+ + +IWI + + LTS ++ +T RR F
Sbjct: 79 SQI---QSDTIIEIFETALINLSTNHKIWIQFFKYLLLTSSDGDDGEYHINKVTYIRRMF 135
Query: 126 DRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDP 170
+ L ++P+ H IW +YL+F + G I T++++Y +Y ++ P
Sbjct: 136 NNCLKSIPLVDHILIWPLYLQFADTIG-GI-TAVKIYLKYKQFLP 178
Score = 150 (57.9 bits), Expect = 2.0e-32, Sum P(2) = 2.0e-32
Identities = 48/208 (23%), Positives = 97/208 (46%)
Query: 118 ITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEG--IPIETSLRVYRRYL-------KY 168
+T RR F+ L ++P+ H IW +YL+F + G ++ L+ Y+++L K
Sbjct: 128 VTYIRRMFNNCLKSIPLVDHILIWPLYLQFADTIGGITAVKIYLK-YKQFLPLPILQGKE 186
Query: 169 DPS-------HIEDFIEFLVKSKLWQEAAERLASVL-NDDQFYSIKGKTKHRLWLELCDL 220
+ + ++ + I+ L K + + ++ N + + + + L+ + DL
Sbjct: 187 NVNKQRNYGMNLHEIIDKLRKFGDVENVMKFYYEIITNPNDYAKLPQPIVYYLF-QYIDL 245
Query: 221 LTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVV 280
L + ++ + ++ D +G+L+ Y+ R EK R + +G+
Sbjct: 246 LIRIKKSFDDDYFETLLTKSLYQYPDHLGKLYIKATKYFKSRGNIEKTRYYYNQGIKKCC 305
Query: 281 TVRDFSVIFDSYSQFEEIMVSAKMAKPD 308
T++DF++I+DSY QFEE V+ K D
Sbjct: 306 TIKDFTMIYDSYLQFEENQVTEITEKVD 333
Score = 55 (24.4 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 45/232 (19%), Positives = 98/232 (42%)
Query: 146 RFVEQEGIPIETSLRVYRRY--LKYDPSHIEDFIEFLVKS-KLWQEAAERLASVL-NDDQ 201
+F E + I I + +YR Y + Y + + + ++KS KLW + L S + +D+Q
Sbjct: 468 KFPETKAIEILDDI-LYREYSDINYTDNS-KPVQQRIIKSIKLWNFYIDLLESFIESDNQ 525
Query: 202 FYSIKGKT---KHRLWLELCD--LLTTHATEISGLNVDA----IIRGGIRKFTDEVG--- 249
I+ T +H + L++ ++ A + N ++ ++ F ++
Sbjct: 526 LKEIEKVTNAYQHLIKLKIATPRIMINFAQFLESWNQYEQCFNVLHQALKIFQNDNQIKF 585
Query: 250 RLWTSLADYYIRR-ELFEKARDIFEEGMMTVVT--VRDFSVIFDSYSQFEEIMVSA-KMA 305
+W I+ +L E+ RD+FE+ + + V+ +++ Y + +A K+
Sbjct: 586 EIWNVYLIKAIKHIQLTERIRDLFEQSINEIAAYLVKPILLLYYQYELDQGYTYNAIKIL 645
Query: 306 KPDLSVXXXXXXXXXXXXXXX-XIRLDVNLSMAEFVKKVLNGFWLHDVKDVD 356
L+ R ++NLS E K ++ L +++D++
Sbjct: 646 IKSLTEKFTPAQKDHKLSTTNPQQRKEINLSKFEIYKLIM--IELGEIQDIE 695
Score = 37 (18.1 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 526 ESLGNLESTRAVYER 540
+S GN+E TR Y +
Sbjct: 285 KSRGNIEKTRYYYNQ 299
>UNIPROTKB|Q5A1C6 [details] [associations]
symbol:SYF1 "Putative uncharacterized protein SYF1"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 CGD:CAL0005248 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 EMBL:AACQ01000084 EMBL:AACQ01000083
InterPro:IPR013633 Pfam:PF08424 eggNOG:NOG289100 KO:K12867
RefSeq:XP_715549.1 RefSeq:XP_715605.1 ProteinModelPortal:Q5A1C6
STRING:Q5A1C6 GeneID:3642755 GeneID:3642796 KEGG:cal:CaO19.10411
KEGG:cal:CaO19.2893 Uniprot:Q5A1C6
Length = 845
Score = 284 (105.0 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 71/223 (31%), Positives = 116/223 (52%)
Query: 357 LRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQ----ILTYTEAVRT 412
L L E L++ R L N + LRQN ++++ W R +I E I T T+A+++
Sbjct: 341 LYLDDFEKLIDDRKILLNDMKLRQNINDLDTWFERFEIIETQTPDDLNLLIQTLTQALKS 400
Query: 413 VDPMKAV----GKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWA 468
++P+K V K +W+ + +Y + D A +IF K+V Y D LA ++ W+
Sbjct: 401 INPLKVVTTNNSKLSGIWLKYVDIYSSRGDFQTADLIFSKSVLSQYIDPDELAELYINWS 460
Query: 469 EMELRHKNFKG--ALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEE 526
EM L F A+E++ ++ D ++PVQ ++ KS++LW FY+DL E
Sbjct: 461 EMILGSDKFPETKAIEILDDILYREYSDINY---TDNSKPVQQRIIKSIKLWNFYIDLLE 517
Query: 527 S-------LGNLESTRAVYERILDLRIATPQIIINYALLLEVW 562
S L +E Y+ ++ L+IATP+I+IN+A LE W
Sbjct: 518 SFIESDNQLKEIEKVTNAYQHLIKLKIATPRIMINFAQFLESW 560
Score = 151 (58.2 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 47/165 (28%), Positives = 87/165 (52%)
Query: 22 RNPFSLKLWWRYLVAKREAP-----FKKRFVIYERALKALPGSYKLWHAYLIERLSIVKN 76
++P ++ W Y K A + K F++Y R++K+ P S +LW LI+ L +++
Sbjct: 22 KDPTNISTWISYYNFKSNATSTTSLYNKLFILY-RSVKSNPTSIELWQL-LID-LVLLEQ 78
Query: 77 LPITHPEYETLNNTFERALVTMHKMPRIWIMYLE--TLTSQ-----KF----ITKARRTF 125
I + +T+ FE AL+ + +IWI + + LTS ++ +T RR F
Sbjct: 79 SQI---QSDTIIEIFETALINLSTNHKIWIQFFKYLLLTSSDGDDGEYHINKVTYIRRMF 135
Query: 126 DRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDP 170
+ L ++P+ H IW +YL+F + G I T++++Y +Y ++ P
Sbjct: 136 NNCLKSIPLVDHILIWPLYLQFADTIG-GI-TAVKIYLKYKQFLP 178
Score = 150 (57.9 bits), Expect = 2.0e-32, Sum P(2) = 2.0e-32
Identities = 48/208 (23%), Positives = 97/208 (46%)
Query: 118 ITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEG--IPIETSLRVYRRYL-------KY 168
+T RR F+ L ++P+ H IW +YL+F + G ++ L+ Y+++L K
Sbjct: 128 VTYIRRMFNNCLKSIPLVDHILIWPLYLQFADTIGGITAVKIYLK-YKQFLPLPILQGKE 186
Query: 169 DPS-------HIEDFIEFLVKSKLWQEAAERLASVL-NDDQFYSIKGKTKHRLWLELCDL 220
+ + ++ + I+ L K + + ++ N + + + + L+ + DL
Sbjct: 187 NVNKQRNYGMNLHEIIDKLRKFGDVENVMKFYYEIITNPNDYAKLPQPIVYYLF-QYIDL 245
Query: 221 LTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVV 280
L + ++ + ++ D +G+L+ Y+ R EK R + +G+
Sbjct: 246 LIRIKKSFDDDYFETLLTKSLYQYPDHLGKLYIKATKYFKSRGNIEKTRYYYNQGIKKCC 305
Query: 281 TVRDFSVIFDSYSQFEEIMVSAKMAKPD 308
T++DF++I+DSY QFEE V+ K D
Sbjct: 306 TIKDFTMIYDSYLQFEENQVTEITEKVD 333
Score = 55 (24.4 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 45/232 (19%), Positives = 98/232 (42%)
Query: 146 RFVEQEGIPIETSLRVYRRY--LKYDPSHIEDFIEFLVKS-KLWQEAAERLASVL-NDDQ 201
+F E + I I + +YR Y + Y + + + ++KS KLW + L S + +D+Q
Sbjct: 468 KFPETKAIEILDDI-LYREYSDINYTDNS-KPVQQRIIKSIKLWNFYIDLLESFIESDNQ 525
Query: 202 FYSIKGKT---KHRLWLELCD--LLTTHATEISGLNVDA----IIRGGIRKFTDEVG--- 249
I+ T +H + L++ ++ A + N ++ ++ F ++
Sbjct: 526 LKEIEKVTNAYQHLIKLKIATPRIMINFAQFLESWNQYEQCFNVLHQALKIFQNDNQIKF 585
Query: 250 RLWTSLADYYIRR-ELFEKARDIFEEGMMTVVT--VRDFSVIFDSYSQFEEIMVSA-KMA 305
+W I+ +L E+ RD+FE+ + + V+ +++ Y + +A K+
Sbjct: 586 EIWNVYLIKAIKHIQLTERIRDLFEQSINEIAAYLVKPILLLYYQYELDQGYTYNAIKIL 645
Query: 306 KPDLSVXXXXXXXXXXXXXXX-XIRLDVNLSMAEFVKKVLNGFWLHDVKDVD 356
L+ R ++NLS E K ++ L +++D++
Sbjct: 646 IKSLTEKFTPAQKDHKLSTTNPQQRKEINLSKFEIYKLIM--IELGEIQDIE 695
Score = 37 (18.1 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 526 ESLGNLESTRAVYER 540
+S GN+E TR Y +
Sbjct: 285 KSRGNIEKTRYYYNQ 299
>SGD|S000002824 [details] [associations]
symbol:SYF1 "Member of the NineTeen Complex (NTC)"
species:4932 "Saccharomyces cerevisiae" [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0071008
"U2-type post-mRNA release spliceosomal complex" evidence=IDA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0071007
"U2-type catalytic step 2 spliceosome" evidence=IDA] [GO:0071006
"U2-type catalytic step 1 spliceosome" evidence=IDA] [GO:0000974
"Prp19 complex" evidence=IDA] [GO:0000386 "second spliceosomal
transesterification activity" evidence=IC] [GO:0000384 "first
spliceosomal transesterification activity" evidence=IC] [GO:0000349
"generation of catalytic spliceosome for first transesterification
step" evidence=IDA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 SGD:S000002824 EMBL:U33007
EMBL:BK006938 GO:GO:0007049 Gene3D:1.25.40.10 GO:GO:0000349
GO:GO:0000974 GO:GO:0071006 GO:GO:0071007 GO:GO:0071008
GO:GO:0071004 eggNOG:NOG289100 KO:K12867 OrthoDB:EOG4DBXP7
GeneTree:ENSGT00550000075140 PIR:S69700 RefSeq:NP_010704.1
ProteinModelPortal:Q04048 SMR:Q04048 DIP:DIP-1681N IntAct:Q04048
MINT:MINT-385933 STRING:Q04048 PaxDb:Q04048 PeptideAtlas:Q04048
EnsemblFungi:YDR416W GeneID:852025 KEGG:sce:YDR416W CYGD:YDR416w
HOGENOM:HOG000065931 OMA:ENIRNDE NextBio:970249
Genevestigator:Q04048 GermOnline:YDR416W Uniprot:Q04048
Length = 859
Score = 246 (91.7 bits), Expect = 3.2e-25, Sum P(3) = 3.2e-25
Identities = 65/217 (29%), Positives = 111/217 (51%)
Query: 359 LARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKA 418
+A E L+N N V LRQ+ + VE W +RV + + + ++ Y+EA+ +DP K
Sbjct: 382 MATFESLINLYDIYLNDVALRQDSNLVETWMKRVSL-QKSAAEKCNVYSEAILKIDPRK- 439
Query: 419 VGKPHT---LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK 475
VG P + LW ++ LY I+ AR ++ ++++V Y ++ L I+ WA+ EL +
Sbjct: 440 VGTPGSFGRLWCSYGDLYWRSNAISTARELWTQSLKVPYPYIEDLEEIYLNWADRELDKE 499
Query: 476 NFKGALELMRRATAEPS-VEVRRRVAADGNE--PVQMKLHKSLRLWTFYVDLEESL---- 528
+ A ++ A P+ E+ +G+ P Q L SLR+W+ Y+D E+
Sbjct: 500 GVERAFSILEDALHVPTNPEILLEKYKNGHRKIPAQTVLFNSLRIWSKYIDYLEAYCPKD 559
Query: 529 GN-----LESTRAVYERILDLRIATPQIIINYALLLE 560
N T+ Y ++DLR+ TP + N+AL L+
Sbjct: 560 ANSSDKIFNKTKMAYNTVIDLRLITPAMAENFALFLQ 596
Score = 96 (38.9 bits), Expect = 3.2e-25, Sum P(3) = 3.2e-25
Identities = 32/137 (23%), Positives = 58/137 (42%)
Query: 22 RNPFSLKLWWRYLVA-KREAPFKKRFV-IYERALKALPGSYKLWHAYLIERLSIVKNLPI 79
+ P ++ W RY+ K E K+ +YER +W Y+ R K +
Sbjct: 32 KTPQNILTWKRYIEYWKEEGRTDKQIRWLYERFCSQFVTDTSIWEDYI--RWESTKEVV- 88
Query: 80 THPEYETLNNTFERALVT-MHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHD 138
E + F+R L + + RI + YLE Q + R +L + H
Sbjct: 89 ---ETSRIFWLFQRCLKSCVRDCDRICLSYLELAIEQYDLAMIRHALASSLMKMEREMHR 145
Query: 139 RIWEIYLRFVEQEGIPI 155
++W+ ++FVE++ +P+
Sbjct: 146 KVWDPVIKFVEEKVLPL 162
Score = 69 (29.3 bits), Expect = 3.2e-25, Sum P(3) = 3.2e-25
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 254 SLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297
SLA YYI R + D+ ++ + + DF I++ Y FE+
Sbjct: 308 SLAKYYISRGRLDSCGDLLKKSLQQTLRYSDFDRIYNFYLLFEQ 351
Score = 67 (28.6 bits), Expect = 8.5e-06, Sum P(3) = 8.5e-06
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 492 SVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL 544
S+E+ RR A G V L L+LW + ES TR +Y+ + +
Sbjct: 683 SIEILRRGAVIGTVSVSTHLESRLQLWRMCISKAESTLGPSVTRELYQECIQI 735
Score = 49 (22.3 bits), Expect = 0.00080, Sum P(3) = 0.00080
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 253 TSLADYYIRRELFEKA-RDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAK 306
+SL+ +IR LFEKA +++ G+ D IF +YS FEE +S ++K
Sbjct: 637 SSLSPEHIRF-LFEKALKNLCSNGI-------DCKTIFIAYSVFEE-RISGLISK 682
Score = 42 (19.8 bits), Expect = 1.2e-19, Sum P(3) = 1.2e-19
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 141 WEIYLRFVEQEGIPIETSLR-VYRRYLKY---DPSHIEDFIEF 179
W+ Y+ + ++EG + +R +Y R+ D S ED+I +
Sbjct: 40 WKRYIEYWKEEG-RTDKQIRWLYERFCSQFVTDTSIWEDYIRW 81
>TAIR|locus:2161363 [details] [associations]
symbol:AT5G45990 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006397
Gene3D:1.25.40.10 EMBL:AB006698 eggNOG:NOG327505
HOGENOM:HOG000207972 IPI:IPI00521045 RefSeq:NP_199411.1
UniGene:At.55396 ProteinModelPortal:Q9FNM3 SMR:Q9FNM3 PaxDb:Q9FNM3
PRIDE:Q9FNM3 EnsemblPlants:AT5G45990.1 GeneID:834639
KEGG:ath:AT5G45990 TAIR:At5g45990 InParanoid:Q9FNM3 OMA:SAFIRYA
PhylomeDB:Q9FNM3 ProtClustDB:CLSN2684756 Genevestigator:Q9FNM3
Uniprot:Q9FNM3
Length = 673
Score = 129 (50.5 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 48/180 (26%), Positives = 82/180 (45%)
Query: 380 QNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPM--KAVGKPHT-LWVAFAKLYE 434
+NP N + W V++ E GN + Y A+ V P K + + LW+ +A LYE
Sbjct: 323 KNPLNYDSWFDYVRLEESVGNKDRIREIYERAIANVPPAQEKRFWQRYIYLWINYA-LYE 381
Query: 435 TY--KDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE-P 491
KD+ R ++ + +++ T A IW AE E+R N GA +++ A + P
Sbjct: 382 EIETKDVERTRDVYRECLKLIPHTKFSFAKIWLLAAEYEIRQLNLTGARQILGNAIGKAP 441
Query: 492 SVEVRRRVAADGNEPVQM----KLHK--------SLRLWTFYVDLEESLGNLESTRAVYE 539
V++ ++ + V + KL++ + W Y + E SL E RA++E
Sbjct: 442 KVKIFKKYIEMELKLVNIDRCRKLYERFLEWSPENCYAWRNYAEFEISLAETERARAIFE 501
Score = 127 (49.8 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 30/114 (26%), Positives = 60/114 (52%)
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWE 142
+Y + +ERAL ++ +W+ Y E KF+ AR +DR++ LP + D++WE
Sbjct: 93 DYARARSVWERALEGEYRNHTLWVKYAEFEMKNKFVNNARNVWDRSVTLLP--RVDQLWE 150
Query: 143 IYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASV 196
Y+ E+ G + + +++ R++ + P + ++ F +K +L ER S+
Sbjct: 151 KYIYMEEKLG-NVTGARQIFERWMNWSPDQ-KAWLCF-IKFELRYNEIERARSI 201
Score = 108 (43.1 bits), Expect = 2.4e-06, Sum P(3) = 2.4e-06
Identities = 35/158 (22%), Positives = 70/158 (44%)
Query: 22 RNPFSLKLWWRYLVAKREAPFKKRF-VIYERALKALPGSY--KLWHAYLIERLSIVKNLP 78
+NP + W+ Y+ + K R IYERA+ +P + + W Y+ ++
Sbjct: 323 KNPLNYDSWFDYVRLEESVGNKDRIREIYERAIANVPPAQEKRFWQRYIYLWINYALYEE 382
Query: 79 ITHPEYETLNNTFERALV----TMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPV 134
I + E + + L T +IW++ E Q +T AR+ A+ P
Sbjct: 383 IETKDVERTRDVYRECLKLIPHTKFSFAKIWLLAAEYEIRQLNLTGARQILGNAIGKAPK 442
Query: 135 TQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSH 172
+I++ Y+ +E + + I+ ++Y R+L++ P +
Sbjct: 443 V---KIFKKYIE-MELKLVNIDRCRKLYERFLEWSPEN 476
Score = 88 (36.0 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 517 LWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556
LW Y+D E S G E TRA+YER+LD R ++ I++A
Sbjct: 515 LWKTYIDFEISEGEFEKTRALYERLLD-RTKHCKVWISFA 553
Score = 85 (35.0 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 48/183 (26%), Positives = 78/183 (42%)
Query: 105 WIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWE--IYL-----RFVEQEGIPIET 157
W Y+ S + R ++RA+ +P Q R W+ IYL + E E +E
Sbjct: 331 WFDYVRLEESVGNKDRIREIYERAIANVPPAQEKRFWQRYIYLWINYALYEEIETKDVER 390
Query: 158 SLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKT-----KHR 212
+ VYR LK P H + F +K+W AAE LN I G K +
Sbjct: 391 TRDVYRECLKLIP-HTK--FSF---AKIWLLAAEYEIRQLNLTGARQILGNAIGKAPKVK 444
Query: 213 LWLELCDLLTTHATEISGLNVDAIIRGGIR--KFTDEVGRLWTSLADYYIRRELFEKARD 270
++ + ++ E+ +N+D + R +++ E W + A++ I E+AR
Sbjct: 445 IFKKYIEM------ELKLVNIDRCRKLYERFLEWSPENCYAWRNYAEFEISLAETERARA 498
Query: 271 IFE 273
IFE
Sbjct: 499 IFE 501
Score = 84 (34.6 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 36/132 (27%), Positives = 60/132 (45%)
Query: 411 RTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEM 470
R VD + + L+V+FA+ E K++ AR I+ A+ DH+ E
Sbjct: 238 RAVDKLANDEEAEILFVSFAEFEERCKEVERARFIYKFAL-------DHIRKGRAE---- 286
Query: 471 ELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN 530
EL K + + E ++ ++R + +E + L+ W YV LEES+GN
Sbjct: 287 ELYKKFVAFEKQYGDKEGIEDAIVGKKRFEYE-DEVSKNPLNYDS--WFDYVRLEESVGN 343
Query: 531 LESTRAVYERIL 542
+ R +YER +
Sbjct: 344 KDRIREIYERAI 355
Score = 62 (26.9 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 41/201 (20%), Positives = 85/201 (42%)
Query: 103 RIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVY 162
++W+ Y + SQ +AR ++RAL H +W Y F E + + + V+
Sbjct: 79 QVWVKYAKWEESQMDYARARSVWERALEG-EYRNHT-LWVKYAEF-EMKNKFVNNARNVW 135
Query: 163 RRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYS--IKGKTKHRLWLELCDL 220
R + P ++ L + ++ E E+L +V Q + + + WL C +
Sbjct: 136 DRSVTLLPR-----VDQLWEKYIYME--EKLGNVTGARQIFERWMNWSPDQKAWL--CFI 186
Query: 221 LTTHATEISGLNVDAIIRGGIRKFT---DEVGRLWTSLADYYIRRELFEK-ARDIFEEGM 276
E+ ++ R +F +V + A + ++R K AR+++E +
Sbjct: 187 ----KFELRYNEIERA-RSIYERFVLCHPKVSA-FIRYAKFEMKRGGQVKLAREVYERAV 240
Query: 277 MTVVTVRDFSVIFDSYSQFEE 297
+ + ++F S+++FEE
Sbjct: 241 DKLANDEEAEILFVSFAEFEE 261
Score = 61 (26.5 bits), Expect = 4.4e-06, Sum P(3) = 4.4e-06
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 425 LWVAFAKLYET---YKD--IANARVIFDKAVQVNYK-TVDHL----ASIWCEWAEME 471
+W++FAK + +K+ I +ARVIFD+A YK T L A++ +W ME
Sbjct: 548 VWISFAKFEASASEHKEDGIKSARVIFDRA-NTYYKDTTPELEEERATLLEDWLNME 603
Score = 47 (21.6 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 13/61 (21%), Positives = 26/61 (42%)
Query: 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMR 485
W +A+ + + AR IF+ A+ + +D +W + + E+ F+ L
Sbjct: 480 WRNYAEFEISLAETERARAIFELAI--SQPALDMPELLWKTYIDFEISEGEFEKTRALYE 537
Query: 486 R 486
R
Sbjct: 538 R 538
Score = 41 (19.5 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 250 RLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVS 301
++W A+Y IR+ AR I + V+ IF Y + E +V+
Sbjct: 411 KIWLLAAEYEIRQLNLTGARQILGNAIGKAPKVK----IFKKYIEMELKLVN 458
Score = 39 (18.8 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 517 LWTFYVDLEESLGNLESTRAVYERILD 543
L+ + + EE +E R +Y+ LD
Sbjct: 252 LFVSFAEFEERCKEVERARFIYKFALD 278
Score = 38 (18.4 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 234 DAIIRGGIRKFTDEVGRLWTSLADYYIRR 262
+A IR +K TD T L+DY +RR
Sbjct: 40 EAEIRPPKQKITDS-----TELSDYRLRR 63
Score = 37 (18.1 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 464 WCEWAEMELRHKNFKGALELMRRATAEPSVEV 495
W +AE E+ + A + A ++P++++
Sbjct: 480 WRNYAEFEISLAETERARAIFELAISQPALDM 511
>POMBASE|SPBC31F10.11c [details] [associations]
symbol:cwf4 "complexed with Cdc5 protein Cwf4"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IC]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 SMART:SM00386 PomBase:SPBC31F10.11c EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0007049
Gene3D:1.25.40.10 GO:GO:0045292 eggNOG:NOG327505 KO:K12869
HOGENOM:HOG000207972 OMA:KFTFAKI OrthoDB:EOG4NKG44 EMBL:AF254353
PIR:T40214 RefSeq:NP_596573.1 ProteinModelPortal:P87312
IntAct:P87312 STRING:P87312 EnsemblFungi:SPBC31F10.11c.1
GeneID:2540328 KEGG:spo:SPBC31F10.11c NextBio:20801457
Uniprot:P87312
Length = 674
Score = 154 (59.3 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 55/217 (25%), Positives = 107/217 (49%)
Query: 83 EYETLNNTFERAL-VTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIW 141
E+ + FERAL V +P +W+ Y+E + I AR FDRA+ LP + D++W
Sbjct: 85 EFARARSVFERALDVDSTYIP-LWLKYIECEMKNRNINHARNLFDRAVTQLP--RVDKLW 141
Query: 142 EIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQ 201
Y+ E G I +V+ R+LK++P ++ ++ + + E ER + ++
Sbjct: 142 YKYVYMEEMLG-NITGCRQVFERWLKWEPDE-NCWMSYIRMERRYHEN-ERARGIY--ER 196
Query: 202 FYSIKGKTKHRL-WLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYI 260
F + + + L W + +A + + + AI G ++F +E R + + A + I
Sbjct: 197 FVVVHPEVTNWLRWARF-EEECGNAANVRQVYLAAIDALG-QEFLNE--RFFIAFAKFEI 252
Query: 261 RRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297
R++ +E+AR IF+ + + + ++ Y+ FE+
Sbjct: 253 RQKEYERARTIFKYAIDFMPRSKSME-LYKEYTHFEK 288
Score = 103 (41.3 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 41/152 (26%), Positives = 69/152 (45%)
Query: 22 RNPFSLKLWWRYLVAKREAP-FKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPIT 80
RN ++ W RY + + F + ++ERAL LW Y IE +KN I
Sbjct: 65 RNRLAMGHWMRYGQWELDQKEFARARSVFERALDVDSTYIPLWLKY-IE--CEMKNRNIN 121
Query: 81 HPEYETLNNTFERALVTMHKMPRIWI--MYLETLTSQKFITKARRTFDRALCALPVTQHD 138
H N F+RA+ + ++ ++W +Y+E + IT R+ F+R L P +
Sbjct: 122 HAR-----NLFDRAVTQLPRVDKLWYKYVYMEEMLGN--ITGCRQVFERWLKWEP---DE 171
Query: 139 RIWEIYLRFVEQEGIPIETSLRVYRRYLKYDP 170
W Y+R +E+ E + +Y R++ P
Sbjct: 172 NCWMSYIR-MERRYHENERARGIYERFVVVHP 202
Score = 97 (39.2 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 48/209 (22%), Positives = 96/209 (45%)
Query: 365 LMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPM--KAVG 420
++++R L LL+ +P++ + W +K+ E G+ TY +A+ V + K
Sbjct: 300 VLDKR-RLQYEKLLKDSPYDYDTWLDLLKLEESAGDINTIRETYEKAIAKVPEVVEKNAW 358
Query: 421 KPHT-LWVAFAKLYET-YKDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNF 477
+ + +W+ + E KD+ AR ++ +A++ + +K A +W +A ELR +
Sbjct: 359 RRYVYIWLNYCLFEEIDVKDVDRARKVYQEALKLIPHKKFT-FAKLWLMYAMFELRQRKI 417
Query: 478 KGALELMRRATA---EPS-----VEVRRRVAA-DGNEPVQMK--LH--KSLRLWTFYVDL 524
A + + RA +P +E + D + K L+ ++ W Y L
Sbjct: 418 DVARKTLGRALGMCPKPKLFRGYIEFEDAIKQFDRCRILYEKWILYDPEACAPWLGYAAL 477
Query: 525 EESLGNLESTRAVYERILDLRIA-TPQII 552
E LG+ + RA+Y ++ I TP+++
Sbjct: 478 ETKLGDSDRARALYNLAVNQPILETPELV 506
Score = 64 (27.6 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 44/188 (23%), Positives = 71/188 (37%)
Query: 357 LRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVD 414
+R+ R H N R + +P V W R + E GN Y A+ D
Sbjct: 178 IRMERRYH-ENERARGIYERFVVVHPE-VTNWLRWARFEEECGNAANVRQVYLAAI---D 232
Query: 415 PMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRH 474
+ ++AFAK K+ AR IF A+ ++ ++ E+ E
Sbjct: 233 ALGQEFLNERFFIAFAKFEIRQKEYERARTIFKYAI--DFMPRSKSMELYKEYTHFE--- 287
Query: 475 KNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLEST 534
K F L + E +V +RR+ E + W + LEES G++ +
Sbjct: 288 KQFGDHLGV------ESTVLDKRRLQY---EKLLKDSPYDYDTWLDLLKLEESAGDINTI 338
Query: 535 RAVYERIL 542
R YE+ +
Sbjct: 339 RETYEKAI 346
Score = 45 (20.9 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 504 NEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERIL 542
N+P+ L +W Y+D E R++Y+++L
Sbjct: 496 NQPI---LETPELVWKAYIDFEFEEMEYGKARSIYQQLL 531
>UNIPROTKB|Q5JY65 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
HOGENOM:HOG000207972 EMBL:AL035454 IPI:IPI00219317
UniGene:Hs.171342 HGNC:HGNC:15762 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC SMR:Q5JY65 IntAct:Q5JY65 Ensembl:ENST00000377327
Uniprot:Q5JY65
Length = 836
Score = 122 (48.0 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 45/217 (20%), Positives = 96/217 (44%)
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWE 142
E + + +ERAL ++ +W+ Y E + + AR +DRA+ LP + ++ W
Sbjct: 245 EIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWY 302
Query: 143 IYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQF 202
Y E G + + +V+ R++++ P E + +L + +R ++ ++F
Sbjct: 303 KYTYMEEMLG-NVAGARQVFERWMEWQPE--EQAWHSYINFELRYKEVDRARTIY--ERF 357
Query: 203 YSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEV--GRLWTSLADYYI 260
+ K+ W++ HA V + F DE L+ + A +
Sbjct: 358 VLVHPDVKN--WIKYARFEEKHAYFAHARKV---YERAVEFFGDEHMDEHLYVAFAKFEE 412
Query: 261 RRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297
++ FE+ R I++ + + + +D +F +Y+ FE+
Sbjct: 413 NQKEFERVRVIYKYALDRI-SKQDAQELFKNYTIFEK 448
Score = 119 (46.9 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 47/174 (27%), Positives = 82/174 (47%)
Query: 378 LRQNPHNVEQWHRRVKIFEGNPTKQIL--TYTEAVRTVDPM--KAVGKPHT-LWVAFAKL 432
++ NPHN + W +++ E + + + Y A+ V P+ K K + LW+ +A L
Sbjct: 472 VKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWINYA-L 530
Query: 433 YETY--KDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATA 489
YE KD R ++ +++ + +K A +W +A+ E+R KN L L RRA
Sbjct: 531 YEELEAKDPERTRQVYQASLELIPHKKFT-FAKMWILYAQFEIRQKN----LSLARRALG 585
Query: 490 EPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543
S+ G P K+ +L+ Y++LE L + R +YE+ L+
Sbjct: 586 T-SI---------GKCP------KN-KLFKVYIELELQLREFDRCRKLYEKFLE 622
Score = 97 (39.2 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 32/134 (23%), Positives = 63/134 (47%)
Query: 48 IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIM 107
IYERAL + LW Y + KN + H N ++RA+ T+ ++ + W
Sbjct: 252 IYERALDVDYRNITLWLKYAEMEM---KNRQVNHAR-----NIWDRAITTLPRVNQFWYK 303
Query: 108 Y--LETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRY 165
Y +E + + AR+ F+R + P ++ W Y+ F E ++ + +Y R+
Sbjct: 304 YTYMEEMLGN--VAGARQVFERWMEWQP---EEQAWHSYINF-ELRYKEVDRARTIYERF 357
Query: 166 LKYDPSHIEDFIEF 179
+ P ++++I++
Sbjct: 358 VLVHPD-VKNWIKY 370
Score = 85 (35.0 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 34/145 (23%), Positives = 67/145 (46%)
Query: 425 LWVAFAKLYETY--KDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGAL 481
LW+ +A LYE KD R ++ +++ + +K A +W +A+ E+R KN A
Sbjct: 524 LWINYA-LYEELEAKDPERTRQVYQASLELIPHKKFT-FAKMWILYAQFEIRQKNLSLAR 581
Query: 482 ELMRRATAE-PS-------VEVRRRVAA-DGNEPVQMKL----HKSLRLWTFYVDLEESL 528
+ + + P +E+ ++ D + K ++ W + +LE L
Sbjct: 582 RALGTSIGKCPKNKLFKVYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETIL 641
Query: 529 GNLESTRAVYE-RILDLRIATPQII 552
G+++ RA+YE I R+ P+++
Sbjct: 642 GDIDRARAIYELAISQPRLDMPEVL 666
Score = 73 (30.8 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 39/176 (22%), Positives = 75/176 (42%)
Query: 26 SLKLWWRYLVAKREAPFKKRFV-----IYERALKALPGSYKLWHAYLIERLSIVKNLPIT 80
++ LW +Y E K R V I++RA+ LP + W+ Y ++ N+
Sbjct: 263 NITLWLKYA----EMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYME-EMLGNVA-- 315
Query: 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRI 140
FER + + + W Y+ K + +AR ++R + P ++
Sbjct: 316 -----GARQVFERWMEWQPE-EQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKN--- 366
Query: 141 WEIYLRFVEQEGIPIETSLRVYRRYLKY-DPSHIED--FIEFLVKSKLWQEAAERL 193
W Y RF E+ + +VY R +++ H+++ ++ F K + Q+ ER+
Sbjct: 367 WIKYARFEEKHAY-FAHARKVYERAVEFFGDEHMDEHLYVAF-AKFEENQKEFERV 420
Score = 73 (30.8 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 34/119 (28%), Positives = 52/119 (43%)
Query: 425 LWVAFAKLYETYKDIANARVIFDKAV-QVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
L+VAFAK E K+ RVI+ A+ +++ + L + + K F
Sbjct: 403 LYVAFAKFEENQKEFERVRVIYKYALDRISKQDAQEL------FKNYTIFEKKFGD---- 452
Query: 484 MRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERIL 542
RR E + +RR + E V+ H + W Y+ L ES E+ R VYER +
Sbjct: 453 -RRGI-EDIIVSKRRFQYE--EEVKANPH-NYDAWFDYLRLVESDAEAEAVREVYERAI 506
Score = 70 (29.7 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
T W+ FA+L DI AR I++ A+ + +D +W + + E+ + + L
Sbjct: 629 TSWIKFAELETILGDIDRARAIYELAI--SQPRLDMPEVLWKSYIDFEIEQEETERTRNL 686
Query: 484 MRR 486
RR
Sbjct: 687 YRR 689
Score = 59 (25.8 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 517 LWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556
LW Y+D E E TR +Y R+L R ++ I++A
Sbjct: 666 LWKSYIDFEIEQEETERTRNLYRRLLQ-RTQHVKVWISFA 704
Score = 51 (23.0 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 90 TFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRAL 129
TFE + + WI Y + S K I +AR ++RAL
Sbjct: 218 TFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 257
Score = 42 (19.8 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLS 310
R+++E+A + F + M F+ ++ +FE + V K A +S
Sbjct: 384 RKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRIS 432
>UNIPROTKB|Q9BZJ0 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0000245 "spliceosomal complex
assembly" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IC] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
EMBL:AF318303 GO:GO:0005737 GO:GO:0016607 GO:GO:0003723
Gene3D:1.25.40.10 GO:GO:0071013 GO:GO:0000245 eggNOG:NOG327505
KO:K12869 OMA:KFTFAKI EMBL:AF255443 EMBL:AF318302 EMBL:AF318304
EMBL:AF318305 EMBL:AF111802 EMBL:AK023246 EMBL:AK023728
EMBL:AK292799 EMBL:AL035454 EMBL:AK022908 IPI:IPI00177437
IPI:IPI00219317 IPI:IPI00219318 IPI:IPI00219320 IPI:IPI01011870
RefSeq:NP_057736.4 UniGene:Hs.171342 ProteinModelPortal:Q9BZJ0
SMR:Q9BZJ0 IntAct:Q9BZJ0 STRING:Q9BZJ0 PhosphoSite:Q9BZJ0
DMDM:147744555 PaxDb:Q9BZJ0 PRIDE:Q9BZJ0 DNASU:51340
Ensembl:ENST00000377340 Ensembl:ENST00000490910
Ensembl:ENST00000496549 Ensembl:ENST00000536226 GeneID:51340
KEGG:hsa:51340 UCSC:uc002wrs.3 CTD:51340 GeneCards:GC20M019963
H-InvDB:HIX0015678 HGNC:HGNC:15762 MIM:610952 neXtProt:NX_Q9BZJ0
PharmGKB:PA26886 HOVERGEN:HBG051046 InParanoid:Q9BZJ0
GenomeRNAi:51340 NextBio:54782 ArrayExpress:Q9BZJ0 Bgee:Q9BZJ0
Genevestigator:Q9BZJ0 GermOnline:ENSG00000101343 Uniprot:Q9BZJ0
Length = 848
Score = 122 (48.0 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 45/217 (20%), Positives = 96/217 (44%)
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWE 142
E + + +ERAL ++ +W+ Y E + + AR +DRA+ LP + ++ W
Sbjct: 257 EIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWY 314
Query: 143 IYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQF 202
Y E G + + +V+ R++++ P E + +L + +R ++ ++F
Sbjct: 315 KYTYMEEMLG-NVAGARQVFERWMEWQPE--EQAWHSYINFELRYKEVDRARTIY--ERF 369
Query: 203 YSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEV--GRLWTSLADYYI 260
+ K+ W++ HA V + F DE L+ + A +
Sbjct: 370 VLVHPDVKN--WIKYARFEEKHAYFAHARKV---YERAVEFFGDEHMDEHLYVAFAKFEE 424
Query: 261 RRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297
++ FE+ R I++ + + + +D +F +Y+ FE+
Sbjct: 425 NQKEFERVRVIYKYALDRI-SKQDAQELFKNYTIFEK 460
Score = 119 (46.9 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 47/174 (27%), Positives = 82/174 (47%)
Query: 378 LRQNPHNVEQWHRRVKIFEGNPTKQIL--TYTEAVRTVDPM--KAVGKPHT-LWVAFAKL 432
++ NPHN + W +++ E + + + Y A+ V P+ K K + LW+ +A L
Sbjct: 484 VKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWINYA-L 542
Query: 433 YETY--KDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATA 489
YE KD R ++ +++ + +K A +W +A+ E+R KN L L RRA
Sbjct: 543 YEELEAKDPERTRQVYQASLELIPHKKFT-FAKMWILYAQFEIRQKN----LSLARRALG 597
Query: 490 EPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543
S+ G P K+ +L+ Y++LE L + R +YE+ L+
Sbjct: 598 T-SI---------GKCP------KN-KLFKVYIELELQLREFDRCRKLYEKFLE 634
Score = 97 (39.2 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 32/134 (23%), Positives = 63/134 (47%)
Query: 48 IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIM 107
IYERAL + LW Y + KN + H N ++RA+ T+ ++ + W
Sbjct: 264 IYERALDVDYRNITLWLKYAEMEM---KNRQVNHAR-----NIWDRAITTLPRVNQFWYK 315
Query: 108 Y--LETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRY 165
Y +E + + AR+ F+R + P ++ W Y+ F E ++ + +Y R+
Sbjct: 316 YTYMEEMLGN--VAGARQVFERWMEWQP---EEQAWHSYINF-ELRYKEVDRARTIYERF 369
Query: 166 LKYDPSHIEDFIEF 179
+ P ++++I++
Sbjct: 370 VLVHPD-VKNWIKY 382
Score = 85 (35.0 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 34/145 (23%), Positives = 67/145 (46%)
Query: 425 LWVAFAKLYETY--KDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGAL 481
LW+ +A LYE KD R ++ +++ + +K A +W +A+ E+R KN A
Sbjct: 536 LWINYA-LYEELEAKDPERTRQVYQASLELIPHKKFT-FAKMWILYAQFEIRQKNLSLAR 593
Query: 482 ELMRRATAE-PS-------VEVRRRVAA-DGNEPVQMKL----HKSLRLWTFYVDLEESL 528
+ + + P +E+ ++ D + K ++ W + +LE L
Sbjct: 594 RALGTSIGKCPKNKLFKVYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETIL 653
Query: 529 GNLESTRAVYE-RILDLRIATPQII 552
G+++ RA+YE I R+ P+++
Sbjct: 654 GDIDRARAIYELAISQPRLDMPEVL 678
Score = 73 (30.8 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 39/176 (22%), Positives = 75/176 (42%)
Query: 26 SLKLWWRYLVAKREAPFKKRFV-----IYERALKALPGSYKLWHAYLIERLSIVKNLPIT 80
++ LW +Y E K R V I++RA+ LP + W+ Y ++ N+
Sbjct: 275 NITLWLKYA----EMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYME-EMLGNVA-- 327
Query: 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRI 140
FER + + + W Y+ K + +AR ++R + P ++
Sbjct: 328 -----GARQVFERWMEWQPE-EQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKN--- 378
Query: 141 WEIYLRFVEQEGIPIETSLRVYRRYLKY-DPSHIED--FIEFLVKSKLWQEAAERL 193
W Y RF E+ + +VY R +++ H+++ ++ F K + Q+ ER+
Sbjct: 379 WIKYARFEEKHAY-FAHARKVYERAVEFFGDEHMDEHLYVAF-AKFEENQKEFERV 432
Score = 73 (30.8 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 34/119 (28%), Positives = 52/119 (43%)
Query: 425 LWVAFAKLYETYKDIANARVIFDKAV-QVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
L+VAFAK E K+ RVI+ A+ +++ + L + + K F
Sbjct: 415 LYVAFAKFEENQKEFERVRVIYKYALDRISKQDAQEL------FKNYTIFEKKFGD---- 464
Query: 484 MRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERIL 542
RR E + +RR + E V+ H + W Y+ L ES E+ R VYER +
Sbjct: 465 -RRGI-EDIIVSKRRFQYE--EEVKANPH-NYDAWFDYLRLVESDAEAEAVREVYERAI 518
Score = 70 (29.7 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
T W+ FA+L DI AR I++ A+ + +D +W + + E+ + + L
Sbjct: 641 TSWIKFAELETILGDIDRARAIYELAI--SQPRLDMPEVLWKSYIDFEIEQEETERTRNL 698
Query: 484 MRR 486
RR
Sbjct: 699 YRR 701
Score = 59 (25.8 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 517 LWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556
LW Y+D E E TR +Y R+L R ++ I++A
Sbjct: 678 LWKSYIDFEIEQEETERTRNLYRRLLQ-RTQHVKVWISFA 716
Score = 51 (23.0 bits), Expect = 0.00055, Sum P(3) = 0.00055
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 90 TFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRAL 129
TFE + + WI Y + S K I +AR ++RAL
Sbjct: 230 TFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 269
Score = 42 (19.8 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLS 310
R+++E+A + F + M F+ ++ +FE + V K A +S
Sbjct: 396 RKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRIS 444
>MGI|MGI:1914127 [details] [associations]
symbol:Crnkl1 "Crn, crooked neck-like 1 (Drosophila)"
species:10090 "Mus musculus" [GO:0000245 "spliceosomal complex
assembly" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 SMART:SM00386 MGI:MGI:1914127 GO:GO:0016607
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0000245
eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI
GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
EMBL:AK004749 EMBL:AK012962 EMBL:AK088882 EMBL:BC029187
IPI:IPI00132376 RefSeq:NP_080096.1 UniGene:Mm.248755
ProteinModelPortal:P63154 SMR:P63154 STRING:P63154
PhosphoSite:P63154 PaxDb:P63154 PRIDE:P63154
Ensembl:ENSMUST00000001818 GeneID:66877 KEGG:mmu:66877
InParanoid:P63154 OrthoDB:EOG4SJ5DC ChiTaRS:CRNKL1 NextBio:322905
Bgee:P63154 CleanEx:MM_CRNKL1 Genevestigator:P63154
GermOnline:ENSMUSG00000001767 Uniprot:P63154
Length = 690
Score = 121 (47.7 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 45/217 (20%), Positives = 96/217 (44%)
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWE 142
E + + +ERAL ++ +W+ Y E + + AR +DRA+ LP + ++ W
Sbjct: 96 EIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWY 153
Query: 143 IYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQF 202
Y E G + + +V+ R++++ P E + +L + ER ++ ++F
Sbjct: 154 KYTYMEEMLG-NVAGARQVFERWMEWQPE--EQAWHSYINFELRYKEVERARTIY--ERF 208
Query: 203 YSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEV--GRLWTSLADYYI 260
+ K+ W++ HA V + F DE L+ + A +
Sbjct: 209 VLVHPAVKN--WIKYARFEEKHAYFAHARKV---YERAVEFFGDEHMDEHLYVAFAKFEE 263
Query: 261 RRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297
++ FE+ R I++ + + + ++ +F +Y+ FE+
Sbjct: 264 NQKEFERVRVIYKYALDRI-SKQEAQELFKNYTIFEK 299
Score = 115 (45.5 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 48/174 (27%), Positives = 79/174 (45%)
Query: 378 LRQNPHNVEQWHRRVKIFEGNPTKQIL--TYTEAVRTVDPM--KAVGKPHT-LWVAFAKL 432
++ NPHN + W +++ E + + Y A+ V P+ K K + LWV +A L
Sbjct: 323 VKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKRYIYLWVNYA-L 381
Query: 433 YETY--KDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATA 489
YE KD R ++ +++ + +K A +W +A+ E+R KN L RRA
Sbjct: 382 YEELEAKDPERTRQVYQASLELIPHKKFT-FAKMWLYYAQFEIRQKN----LPFARRALG 436
Query: 490 EPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543
S+ G P + KL K Y++LE L + R +YE+ L+
Sbjct: 437 T-SI---------GKCP-KNKLFKG------YIELELQLREFDRCRKLYEKFLE 473
Score = 101 (40.6 bits), Expect = 7.6e-09, Sum P(3) = 7.6e-09
Identities = 33/134 (24%), Positives = 64/134 (47%)
Query: 48 IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIM 107
IYERAL + LW Y + KN + H N ++RA+ T+ ++ + W
Sbjct: 103 IYERALDVDYRNITLWLKYAEMEM---KNRQVNHAR-----NIWDRAITTLPRVNQFWYK 154
Query: 108 Y--LETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRY 165
Y +E + + AR+ F+R + P ++ W Y+ F E +E + +Y R+
Sbjct: 155 YTYMEEMLGN--VAGARQVFERWMEWQP---EEQAWHSYINF-ELRYKEVERARTIYERF 208
Query: 166 LKYDPSHIEDFIEF 179
+ P+ ++++I++
Sbjct: 209 VLVHPA-VKNWIKY 221
Score = 90 (36.7 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 36/145 (24%), Positives = 67/145 (46%)
Query: 425 LWVAFAKLYETY--KDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGAL 481
LWV +A LYE KD R ++ +++ + +K A +W +A+ E+R KN A
Sbjct: 375 LWVNYA-LYEELEAKDPERTRQVYQASLELIPHKKFT-FAKMWLYYAQFEIRQKNLPFAR 432
Query: 482 ELMRRATAE-PS-------VEVRRRVAA-DGNEPVQMKL----HKSLRLWTFYVDLEESL 528
+ + + P +E+ ++ D + K ++ W + +LE L
Sbjct: 433 RALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETIL 492
Query: 529 GNLESTRAVYE-RILDLRIATPQII 552
G++E RA+YE I R+ P+++
Sbjct: 493 GDIERARAIYELAISQPRLDMPEVL 517
Score = 76 (31.8 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 39/176 (22%), Positives = 75/176 (42%)
Query: 26 SLKLWWRYLVAKREAPFKKRFV-----IYERALKALPGSYKLWHAYLIERLSIVKNLPIT 80
++ LW +Y E K R V I++RA+ LP + W+ Y ++ N+
Sbjct: 114 NITLWLKYA----EMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYME-EMLGNVA-- 166
Query: 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRI 140
FER + + + W Y+ K + +AR ++R + P ++
Sbjct: 167 -----GARQVFERWMEWQPE-EQAWHSYINFELRYKEVERARTIYERFVLVHPAVKN--- 217
Query: 141 WEIYLRFVEQEGIPIETSLRVYRRYLKY-DPSHIED--FIEFLVKSKLWQEAAERL 193
W Y RF E+ + +VY R +++ H+++ ++ F K + Q+ ER+
Sbjct: 218 WIKYARFEEKHAY-FAHARKVYERAVEFFGDEHMDEHLYVAF-AKFEENQKEFERV 271
Score = 70 (29.7 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 33/119 (27%), Positives = 52/119 (43%)
Query: 425 LWVAFAKLYETYKDIANARVIFDKAV-QVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
L+VAFAK E K+ RVI+ A+ +++ + L + + K F
Sbjct: 254 LYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQEL------FKNYTIFEKKFGD---- 303
Query: 484 MRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERIL 542
RR E + +RR + E V+ H + W Y+ L ES ++ R VYER +
Sbjct: 304 -RRGI-EDIIVSKRRFQYE--EEVKANPH-NYDAWFDYLRLVESDAEADTVREVYERAI 357
Score = 67 (28.6 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
T W+ FA+L DI AR I++ A+ + +D +W + + E+ + + L
Sbjct: 480 TSWIKFAELETILGDIERARAIYELAI--SQPRLDMPEVLWKSYIDFEIEQEETERTRNL 537
Query: 484 MRR 486
R+
Sbjct: 538 YRQ 540
Score = 55 (24.4 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 517 LWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556
LW Y+D E E TR +Y ++L R ++ I++A
Sbjct: 517 LWKSYIDFEIEQEETERTRNLYRQLLQ-RTQHVKVWISFA 555
Score = 51 (23.0 bits), Expect = 0.00070, Sum P(3) = 0.00070
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 90 TFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRAL 129
TFE + + WI Y + S K I +AR ++RAL
Sbjct: 69 TFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 108
Score = 42 (19.8 bits), Expect = 7.6e-09, Sum P(3) = 7.6e-09
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLS 310
R+++E+A + F + M F+ ++ +FE + V K A +S
Sbjct: 235 RKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRIS 283
>RGD|620507 [details] [associations]
symbol:Crnkl1 "crooked neck pre-mRNA splicing factor-like 1
(Drosophila)" species:10116 "Rattus norvegicus" [GO:0000245
"spliceosomal complex assembly" evidence=ISO;ISS] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 RGD:620507
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC EMBL:AF245018 EMBL:BC085718 IPI:IPI00327482
RefSeq:NP_446249.1 RefSeq:XP_003749628.1 UniGene:Rn.162694
ProteinModelPortal:P63155 SMR:P63155 STRING:P63155 PRIDE:P63155
Ensembl:ENSRNOT00000014632 GeneID:100910202 GeneID:116481
KEGG:rno:100910202 KEGG:rno:116481 UCSC:RGD:620507
InParanoid:P63155 NextBio:619051 Genevestigator:P63155
GermOnline:ENSRNOG00000040045 Uniprot:P63155
Length = 690
Score = 121 (47.7 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 45/217 (20%), Positives = 96/217 (44%)
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWE 142
E + + +ERAL ++ +W+ Y E + + AR +DRA+ LP + ++ W
Sbjct: 96 EIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWY 153
Query: 143 IYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQF 202
Y E G + + +V+ R++++ P E + +L + ER ++ ++F
Sbjct: 154 KYTYMEEMLG-NVAGARQVFERWMEWQPE--EQAWHSYINFELRYKEVERARTIY--ERF 208
Query: 203 YSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEV--GRLWTSLADYYI 260
+ K+ W++ HA V + F DE L+ + A +
Sbjct: 209 VLVHPAVKN--WIKYARFEEKHAYFAHARKV---YERAVEFFGDEHMDEHLYVAFAKFEE 263
Query: 261 RRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297
++ FE+ R I++ + + + ++ +F +Y+ FE+
Sbjct: 264 NQKEFERVRVIYKYALDRI-SKQEAQELFKNYTIFEK 299
Score = 115 (45.5 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 48/174 (27%), Positives = 79/174 (45%)
Query: 378 LRQNPHNVEQWHRRVKIFEGNPTKQIL--TYTEAVRTVDPM--KAVGKPHT-LWVAFAKL 432
++ NPHN + W +++ E + + Y A+ V P+ K K + LWV +A L
Sbjct: 323 VKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKRYIYLWVNYA-L 381
Query: 433 YETY--KDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATA 489
YE KD R ++ +++ + +K A +W +A+ E+R KN L RRA
Sbjct: 382 YEELEAKDPERTRQVYQASLELIPHKKFT-FAKMWLYYAQFEIRQKN----LPFARRALG 436
Query: 490 EPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543
S+ G P + KL K Y++LE L + R +YE+ L+
Sbjct: 437 T-SI---------GKCP-KNKLFKG------YIELELQLREFDRCRKLYEKFLE 473
Score = 101 (40.6 bits), Expect = 7.6e-09, Sum P(3) = 7.6e-09
Identities = 33/134 (24%), Positives = 64/134 (47%)
Query: 48 IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIM 107
IYERAL + LW Y + KN + H N ++RA+ T+ ++ + W
Sbjct: 103 IYERALDVDYRNITLWLKYAEMEM---KNRQVNHAR-----NIWDRAITTLPRVNQFWYK 154
Query: 108 Y--LETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRY 165
Y +E + + AR+ F+R + P ++ W Y+ F E +E + +Y R+
Sbjct: 155 YTYMEEMLGN--VAGARQVFERWMEWQP---EEQAWHSYINF-ELRYKEVERARTIYERF 208
Query: 166 LKYDPSHIEDFIEF 179
+ P+ ++++I++
Sbjct: 209 VLVHPA-VKNWIKY 221
Score = 90 (36.7 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 36/145 (24%), Positives = 67/145 (46%)
Query: 425 LWVAFAKLYETY--KDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGAL 481
LWV +A LYE KD R ++ +++ + +K A +W +A+ E+R KN A
Sbjct: 375 LWVNYA-LYEELEAKDPERTRQVYQASLELIPHKKFT-FAKMWLYYAQFEIRQKNLPFAR 432
Query: 482 ELMRRATAE-PS-------VEVRRRVAA-DGNEPVQMKL----HKSLRLWTFYVDLEESL 528
+ + + P +E+ ++ D + K ++ W + +LE L
Sbjct: 433 RALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETIL 492
Query: 529 GNLESTRAVYE-RILDLRIATPQII 552
G++E RA+YE I R+ P+++
Sbjct: 493 GDIERARAIYELAISQPRLDMPEVL 517
Score = 76 (31.8 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 39/176 (22%), Positives = 75/176 (42%)
Query: 26 SLKLWWRYLVAKREAPFKKRFV-----IYERALKALPGSYKLWHAYLIERLSIVKNLPIT 80
++ LW +Y E K R V I++RA+ LP + W+ Y ++ N+
Sbjct: 114 NITLWLKYA----EMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYME-EMLGNVA-- 166
Query: 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRI 140
FER + + + W Y+ K + +AR ++R + P ++
Sbjct: 167 -----GARQVFERWMEWQPE-EQAWHSYINFELRYKEVERARTIYERFVLVHPAVKN--- 217
Query: 141 WEIYLRFVEQEGIPIETSLRVYRRYLKY-DPSHIED--FIEFLVKSKLWQEAAERL 193
W Y RF E+ + +VY R +++ H+++ ++ F K + Q+ ER+
Sbjct: 218 WIKYARFEEKHAY-FAHARKVYERAVEFFGDEHMDEHLYVAF-AKFEENQKEFERV 271
Score = 70 (29.7 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 33/119 (27%), Positives = 52/119 (43%)
Query: 425 LWVAFAKLYETYKDIANARVIFDKAV-QVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
L+VAFAK E K+ RVI+ A+ +++ + L + + K F
Sbjct: 254 LYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQEL------FKNYTIFEKKFGD---- 303
Query: 484 MRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERIL 542
RR E + +RR + E V+ H + W Y+ L ES ++ R VYER +
Sbjct: 304 -RRGI-EDIIVSKRRFQYE--EEVKANPH-NYDAWFDYLRLVESDAEADTVREVYERAI 357
Score = 67 (28.6 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
T W+ FA+L DI AR I++ A+ + +D +W + + E+ + + L
Sbjct: 480 TSWIKFAELETILGDIERARAIYELAI--SQPRLDMPEVLWKSYIDFEIEQEETERTRNL 537
Query: 484 MRR 486
R+
Sbjct: 538 YRQ 540
Score = 55 (24.4 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 517 LWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556
LW Y+D E E TR +Y ++L R ++ I++A
Sbjct: 517 LWKSYIDFEIEQEETERTRNLYRQLLQ-RTQHVKVWISFA 555
Score = 51 (23.0 bits), Expect = 0.00070, Sum P(3) = 0.00070
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 90 TFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRAL 129
TFE + + WI Y + S K I +AR ++RAL
Sbjct: 69 TFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 108
Score = 42 (19.8 bits), Expect = 7.6e-09, Sum P(3) = 7.6e-09
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLS 310
R+++E+A + F + M F+ ++ +FE + V K A +S
Sbjct: 235 RKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRIS 283
>UNIPROTKB|F1P3Q8 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:AADN02044253 EMBL:AADN02044254 IPI:IPI00599254
Ensembl:ENSGALT00000013732 Uniprot:F1P3Q8
Length = 704
Score = 124 (48.7 bits), Expect = 7.4e-11, Sum P(2) = 7.4e-11
Identities = 48/173 (27%), Positives = 78/173 (45%)
Query: 378 LRQNPHNVEQWHRRVKIFEGNPTKQIL--TYTEAVRTVDPM--KAVGKPHT-LWVAFAKL 432
++ NPHN + W +++ E + + + Y A+ V P+ K K + LW+ +A L
Sbjct: 340 VKANPHNYDAWFDYLRLVESDADAETVREVYERAIANVPPIQEKRYWKRYIYLWINYA-L 398
Query: 433 YETY--KDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE 490
YE KD R ++ +++ A IW +A+ E+R KN L L RRA
Sbjct: 399 YEELEAKDPERTRQVYQACIELLPHKKFTFAKIWLLYAQFEIRQKN----LPLARRALGT 454
Query: 491 PSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543
S+ G P + KL K Y++LE L + R +YE+ L+
Sbjct: 455 -SI---------GKCP-KNKLFKG------YIELELQLREFDRCRKLYEKFLE 490
Score = 111 (44.1 bits), Expect = 7.4e-11, Sum P(2) = 7.4e-11
Identities = 49/220 (22%), Positives = 98/220 (44%)
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWE 142
E + + +ERAL ++ +W+ Y E + + AR +DRA+ LP + ++ W
Sbjct: 112 EIQRARSIYERALDVDYRNVTLWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWY 169
Query: 143 IYLRFVEQEGIPIETSLRVYRRYLKYDPSHI--EDFIEFLVKSKLWQEAAE---RLASVL 197
Y E G + S +V+ R++++ P +I F ++ K A L ++
Sbjct: 170 KYTYMEEMLG-NVAGSRQVFERWMEWQPEEQAWHSYINFELRYKEVDRARTIYIALLVIV 228
Query: 198 NDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLAD 257
+ D +K K+ + E HA ++ V+ G + DE L+ + A
Sbjct: 229 HPD----VKNWIKYARFEEK-HCYFAHARKVYERAVEFF---G-EEHMDE--HLYVAFAK 277
Query: 258 YYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297
+ ++ FE+ R I++ + + +D +F +Y+ FE+
Sbjct: 278 FEENQKEFERVRVIYKYALDRIPK-QDAQNLFKNYTIFEK 316
Score = 110 (43.8 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 23/69 (33%), Positives = 43/69 (62%)
Query: 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMR 485
W+ +A+ E+ K+I AR I+++A+ V+Y+ V ++W ++AEME++++ A +
Sbjct: 100 WIKYAQWEESLKEIQRARSIYERALDVDYRNV----TLWLKYAEMEMKNRQVNHARNIWD 155
Query: 486 RA-TAEPSV 493
RA T P V
Sbjct: 156 RAITTLPRV 164
Score = 87 (35.7 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 34/144 (23%), Positives = 64/144 (44%)
Query: 425 LWVAFAKLYETY--KDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALE 482
LW+ +A LYE KD R ++ +++ A IW +A+ E+R KN A
Sbjct: 392 LWINYA-LYEELEAKDPERTRQVYQACIELLPHKKFTFAKIWLLYAQFEIRQKNLPLARR 450
Query: 483 LMRRATAE-PS-------VEVRRRVAA-DGNEPVQMKL----HKSLRLWTFYVDLEESLG 529
+ + + P +E+ ++ D + K ++ W + +LE LG
Sbjct: 451 ALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFAPENCTSWIKFAELETILG 510
Query: 530 NLESTRAVYE-RILDLRIATPQII 552
+++ RA+YE I R+ P+++
Sbjct: 511 DIDRARAIYELAISQPRLDMPEVL 534
Score = 80 (33.2 bits), Expect = 7.0e-08, Sum P(3) = 7.0e-08
Identities = 30/134 (22%), Positives = 60/134 (44%)
Query: 48 IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIM 107
IYERAL + LW Y + KN + H N ++RA+ T+ ++ + W
Sbjct: 119 IYERALDVDYRNVTLWLKYAEMEM---KNRQVNHAR-----NIWDRAITTLPRVNQFWYK 170
Query: 108 Y--LETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRY 165
Y +E + + +R+ F+R + P ++ W Y+ F E ++ + +Y
Sbjct: 171 YTYMEEMLGN--VAGSRQVFERWMEWQP---EEQAWHSYINF-ELRYKEVDRARTIYIAL 224
Query: 166 LKYDPSHIEDFIEF 179
L ++++I++
Sbjct: 225 LVIVHPDVKNWIKY 238
Score = 75 (31.5 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
T W+ FA+L DI AR I++ A+ + +D +W + + E+ + ++ L
Sbjct: 497 TSWIKFAELETILGDIDRARAIYELAI--SQPRLDMPEVLWKSYIDFEIEQEEYEKTRNL 554
Query: 484 MRR 486
RR
Sbjct: 555 YRR 557
Score = 70 (29.7 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 26/119 (21%), Positives = 49/119 (41%)
Query: 48 IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIM 107
++ER ++ P + WH+Y+ N + + E + + LV +H + WI
Sbjct: 187 VFERWMEWQPEE-QAWHSYI--------NFELRYKEVDRARTIYIALLVIVHPDVKNWIK 237
Query: 108 YLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETS-LRVYRRY 165
Y + AR+ ++RA+ D +Y+ F + E E +RV +Y
Sbjct: 238 YARFEEKHCYFAHARKVYERAVEFFGEEHMDE--HLYVAFAKFEENQKEFERVRVIYKY 294
Score = 63 (27.2 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 41/178 (23%), Positives = 76/178 (42%)
Query: 26 SLKLWWRYLVAKREAPFKKRFV-----IYERALKALPGSYKLWHAYLIERLSIVKNLPIT 80
++ LW +Y E K R V I++RA+ LP + W+ Y ++ N+ +
Sbjct: 130 NVTLWLKYA----EMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYME-EMLGNVAGS 184
Query: 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRI 140
FER + + + W Y+ K + +AR + AL V H +
Sbjct: 185 R-------QVFERWMEWQPE-EQAWHSYINFELRYKEVDRARTIY----IALLVIVHPDV 232
Query: 141 --WEIYLRFVEQEGIPIETSLRVYRRYLKY-DPSHIED--FIEFLVKSKLWQEAAERL 193
W Y RF E++ + +VY R +++ H+++ ++ F K + Q+ ER+
Sbjct: 233 KNWIKYARF-EEKHCYFAHARKVYERAVEFFGEEHMDEHLYVAF-AKFEENQKEFERV 288
Score = 60 (26.2 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 517 LWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556
LW Y+D E E TR +Y R+L R ++ I++A
Sbjct: 534 LWKSYIDFEIEQEEYEKTRNLYRRLLQ-RTQHVKVWISFA 572
Score = 51 (23.0 bits), Expect = 5.4e-05, Sum P(3) = 5.4e-05
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 90 TFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRAL 129
TFE + + WI Y + S K I +AR ++RAL
Sbjct: 85 TFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 124
Score = 44 (20.5 bits), Expect = 7.0e-08, Sum P(3) = 7.0e-08
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMA 305
R+++E+A + F E M F+ ++ +FE + V K A
Sbjct: 252 RKVYERAVEFFGEEHMDEHLYVAFAKFEENQKEFERVRVIYKYA 295
>UNIPROTKB|J9P5Z1 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
Ensembl:ENSCAFT00000047479 Uniprot:J9P5Z1
Length = 728
Score = 116 (45.9 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 48/174 (27%), Positives = 80/174 (45%)
Query: 378 LRQNPHNVEQWHRRVKIFEGNPTKQIL--TYTEAVRTVDPM--KAVGKPHT-LWVAFAKL 432
++ NPHN + W +++ E + + + Y A+ V P+ K K + LWV +A L
Sbjct: 364 VKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPIQEKRHWKRYIYLWVNYA-L 422
Query: 433 YETY--KDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATA 489
YE KD R ++ +++ + +K A +W +A+ E+R KN L RRA
Sbjct: 423 YEELEAKDPERTRQVYQASLELIPHKKFT-FAKMWLLYAQFEIRQKN----LPFARRALG 477
Query: 490 EPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543
S+ G P + KL K Y++LE L + R +YE+ L+
Sbjct: 478 T-SI---------GKCP-KNKLFKG------YIELELQLREFDRCRKLYEKFLE 514
Score = 115 (45.5 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 44/217 (20%), Positives = 95/217 (43%)
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWE 142
E + + +ERAL ++ +W+ Y E + + AR +DRA+ LP + ++ W
Sbjct: 137 EIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWY 194
Query: 143 IYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQF 202
Y E G I + +V+ R++++ P E + +L + +R ++ ++F
Sbjct: 195 KYTYMEEMLG-NIAGARQVFERWMEWQPE--EQAWHSYINFELRYKEVDRARTIY--ERF 249
Query: 203 YSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEV--GRLWTSLADYYI 260
+ K+ W++ H V + F DE L+ + A +
Sbjct: 250 VLVHPDVKN--WIKYARFEEKHGYFAHARKV---YERAVEFFGDEHMDEHLYVAFAKFEE 304
Query: 261 RRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297
++ FE+ R I++ + + + ++ +F +Y+ FE+
Sbjct: 305 NQKEFERVRVIYKYALDRI-SKQEAQELFKNYTIFEK 340
Score = 98 (39.6 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 33/134 (24%), Positives = 63/134 (47%)
Query: 48 IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIM 107
IYERAL + LW Y + KN + H N ++RA+ T+ ++ + W
Sbjct: 144 IYERALDVDYRNITLWLKYAEMEM---KNRQVNHAR-----NIWDRAITTLPRVNQFWYK 195
Query: 108 Y--LETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRY 165
Y +E + I AR+ F+R + P ++ W Y+ F E ++ + +Y R+
Sbjct: 196 YTYMEEMLGN--IAGARQVFERWMEWQP---EEQAWHSYINF-ELRYKEVDRARTIYERF 249
Query: 166 LKYDPSHIEDFIEF 179
+ P ++++I++
Sbjct: 250 VLVHPD-VKNWIKY 262
Score = 89 (36.4 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 36/145 (24%), Positives = 67/145 (46%)
Query: 425 LWVAFAKLYETY--KDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGAL 481
LWV +A LYE KD R ++ +++ + +K A +W +A+ E+R KN A
Sbjct: 416 LWVNYA-LYEELEAKDPERTRQVYQASLELIPHKKFT-FAKMWLLYAQFEIRQKNLPFAR 473
Query: 482 ELMRRATAE-PS-------VEVRRRVAA-DGNEPVQMKL----HKSLRLWTFYVDLEESL 528
+ + + P +E+ ++ D + K ++ W + +LE L
Sbjct: 474 RALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETIL 533
Query: 529 GNLESTRAVYE-RILDLRIATPQII 552
G++E RA+YE I R+ P+++
Sbjct: 534 GDIERARAIYELAISQPRLDMPEVL 558
Score = 80 (33.2 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
Identities = 40/176 (22%), Positives = 76/176 (43%)
Query: 26 SLKLWWRYLVAKREAPFKKRFV-----IYERALKALPGSYKLWHAYLIERLSIVKNLPIT 80
++ LW +Y E K R V I++RA+ LP + W+ Y ++ N+
Sbjct: 155 NITLWLKYA----EMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYME-EMLGNIA-- 207
Query: 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRI 140
FER + + + W Y+ K + +AR ++R + P ++
Sbjct: 208 -----GARQVFERWMEWQPE-EQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKN--- 258
Query: 141 WEIYLRFVEQEGIPIETSLRVYRRYLKY-DPSHIED--FIEFLVKSKLWQEAAERL 193
W Y RF E+ G + +VY R +++ H+++ ++ F K + Q+ ER+
Sbjct: 259 WIKYARFEEKHGY-FAHARKVYERAVEFFGDEHMDEHLYVAF-AKFEENQKEFERV 312
Score = 73 (30.8 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 34/119 (28%), Positives = 52/119 (43%)
Query: 425 LWVAFAKLYETYKDIANARVIFDKAV-QVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
L+VAFAK E K+ RVI+ A+ +++ + L + + K F
Sbjct: 295 LYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQEL------FKNYTIFEKKFGD---- 344
Query: 484 MRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERIL 542
RR E + +RR + E V+ H + W Y+ L ES E+ R VYER +
Sbjct: 345 -RRGI-EDIIVSKRRFQYE--EEVKANPH-NYDAWFDYLRLVESDAEAETVREVYERAI 398
Score = 71 (30.1 bits), Expect = 9.9e-06, Sum P(2) = 9.9e-06
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
T W+ FA+L DI AR I++ A+ + +D +W + + E+ + + L
Sbjct: 521 TSWIKFAELETILGDIERARAIYELAI--SQPRLDMPEVLWKSYIDFEIEQEETERTRNL 578
Query: 484 MRR 486
RR
Sbjct: 579 YRR 581
Score = 59 (25.8 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 517 LWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556
LW Y+D E E TR +Y R+L R ++ I++A
Sbjct: 558 LWKSYIDFEIEQEETERTRNLYRRLLQ-RTQHVKVWISFA 596
Score = 51 (23.0 bits), Expect = 0.00066, Sum P(3) = 0.00066
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 90 TFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRAL 129
TFE + + WI Y + S K I +AR ++RAL
Sbjct: 110 TFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 149
Score = 42 (19.8 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLS 310
R+++E+A + F + M F+ ++ +FE + V K A +S
Sbjct: 276 RKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRIS 324
>ZFIN|ZDB-GENE-040426-694 [details] [associations]
symbol:crnkl1 "crooked neck pre-mRNA splicing
factor-like 1 (Drosophila)" species:7955 "Danio rerio" [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
ZFIN:ZDB-GENE-040426-694 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00550000074931 EMBL:CABZ01008082
EMBL:CABZ01008083 EMBL:CABZ01008084 IPI:IPI00932828
Ensembl:ENSDART00000112689 ArrayExpress:E7FGM7 Bgee:E7FGM7
Uniprot:E7FGM7
Length = 754
Score = 120 (47.3 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
Identities = 45/217 (20%), Positives = 95/217 (43%)
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWE 142
E + + +ERAL H+ +W+ Y E + + AR +DRA+ LP + ++ W
Sbjct: 95 EVQRSRSIYERALDVDHRNITLWLKYAEMEMKNRQVNHARNIWDRAITILP--RVNQFWY 152
Query: 143 IYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQF 202
Y E G I +V+ R+++++P E + +L + ++ S+ +
Sbjct: 153 KYTYMEEMLG-NIAGCRQVFERWMEWEPE--EQAWHSYINFELRYKEVDKARSIY-EKAL 208
Query: 203 YSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDE-VGR-LWTSLADYYI 260
+ + K+ W++ H G V + F +E V L+ + A +
Sbjct: 209 VMVHPEVKN--WIKYAHFEEKHGYVARGRKV---FERAVEFFGEEQVSENLYVAFARFEE 263
Query: 261 RRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297
+++ FE+ R I++ + + + +F +Y+ FE+
Sbjct: 264 KQKEFERVRVIYKYALDRIPK-QQAQELFKNYTVFEK 299
Score = 107 (42.7 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
Identities = 45/176 (25%), Positives = 76/176 (43%)
Query: 378 LRQNPHNVEQWHRRVKIFEGNPTKQIL--TYTEAVRTVDPMKAVGKPHT-----LWVAFA 430
++ NPHN + W +++ E + + Y A+ + P++ K H LW+ +A
Sbjct: 323 VKANPHNYDAWFDYLRLVESDADADTVREVYERAIANIPPIQE--KRHWRRYIYLWINYA 380
Query: 431 KLYETY--KDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRA 487
LYE KD R ++ ++ + +K A IW + + E+R KN + A RR
Sbjct: 381 -LYEELEVKDPERTRQVYKACLELIPHKKFT-FAKIWLLYGQFEIRQKNLQNA----RRG 434
Query: 488 TAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543
A G P + KL K Y++LE L + R +YE+ L+
Sbjct: 435 LG----------TAIGKCP-KNKLFKG------YIELELQLREFDRCRKLYEKYLE 473
Score = 98 (39.6 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 24/105 (22%), Positives = 51/105 (48%)
Query: 48 IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIM 107
++ER ++ P + WH+Y+ N + + E + + +E+ALV +H + WI
Sbjct: 170 VFERWMEWEPEE-QAWHSYI--------NFELRYKEVDKARSIYEKALVMVHPEVKNWIK 220
Query: 108 YLETLTSQKFITKARRTFDRALCALPVTQ-HDRIWEIYLRFVEQE 151
Y ++ + R+ F+RA+ Q + ++ + RF E++
Sbjct: 221 YAHFEEKHGYVARGRKVFERAVEFFGEEQVSENLYVAFARFEEKQ 265
Score = 80 (33.2 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 30/134 (22%), Positives = 59/134 (44%)
Query: 48 IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIM 107
IYERAL + LW Y + KN + H N ++RA+ + ++ + W
Sbjct: 102 IYERALDVDHRNITLWLKYAEMEM---KNRQVNHAR-----NIWDRAITILPRVNQFWYK 153
Query: 108 Y--LETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRY 165
Y +E + I R+ F+R + P ++ W Y+ F E ++ + +Y +
Sbjct: 154 YTYMEEMLGN--IAGCRQVFERWMEWEP---EEQAWHSYINF-ELRYKEVDKARSIYEKA 207
Query: 166 LKYDPSHIEDFIEF 179
L ++++I++
Sbjct: 208 LVMVHPEVKNWIKY 221
Score = 79 (32.9 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 33/145 (22%), Positives = 66/145 (45%)
Query: 425 LWVAFAKLYETY--KDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGAL 481
LW+ +A LYE KD R ++ ++ + +K A IW + + E+R KN + A
Sbjct: 375 LWINYA-LYEELEVKDPERTRQVYKACLELIPHKKFT-FAKIWLLYGQFEIRQKNLQNAR 432
Query: 482 ELMRRATAE-PS-------VEVRRRVAA-DGNEPVQMKL----HKSLRLWTFYVDLEESL 528
+ A + P +E+ ++ D + K ++ W + +LE L
Sbjct: 433 RGLGTAIGKCPKNKLFKGYIELELQLREFDRCRKLYEKYLEFSPENCTTWIKFAELETIL 492
Query: 529 GNLESTRAVYERILDL-RIATPQII 552
G+ + +RA++E + R+ P+++
Sbjct: 493 GDTDRSRAIFELAIGQPRLDMPEVL 517
Score = 74 (31.1 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 34/148 (22%), Positives = 61/148 (41%)
Query: 26 SLKLWWRYLVAKREAPFKKRFV-----IYERALKALPGSYKLWHAYLIERLSIVKNLPIT 80
++ LW +Y E K R V I++RA+ LP + W+ Y ++ N+
Sbjct: 113 NITLWLKYA----EMEMKNRQVNHARNIWDRAITILPRVNQFWYKYTYME-EMLGNIA-- 165
Query: 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRI 140
FER + + W Y+ K + KAR +++AL + V +
Sbjct: 166 -----GCRQVFERWM-EWEPEEQAWHSYINFELRYKEVDKARSIYEKAL--VMVHPEVKN 217
Query: 141 WEIYLRFVEQEGIPIETSLRVYRRYLKY 168
W Y F E+ G + +V+ R +++
Sbjct: 218 WIKYAHFEEKHGY-VARGRKVFERAVEF 244
Score = 65 (27.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 517 LWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556
LW Y+D E ++TR +Y+R+L R ++ I+YA
Sbjct: 517 LWKSYIDFEIEQEEYDNTRGLYKRLLQ-RTQHVKVWISYA 555
Score = 65 (27.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
T W+ FA+L D +R IF+ A+ +D +W + + E+ + + L
Sbjct: 480 TTWIKFAELETILGDTDRSRAIFELAI--GQPRLDMPEVLWKSYIDFEIEQEEYDNTRGL 537
Query: 484 MRR 486
+R
Sbjct: 538 YKR 540
Score = 57 (25.1 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 24/100 (24%), Positives = 45/100 (45%)
Query: 378 LRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPH-----TLWVAFAKL 432
L +P N W +K E + IL T+ R + + A+G+P LW ++
Sbjct: 472 LEFSPENCTTW---IKFAE---LETILGDTDRSRAIFEL-AIGQPRLDMPEVLWKSYIDF 524
Query: 433 YETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMEL 472
++ N R ++ + +Q +T H+ +W +A+ EL
Sbjct: 525 EIEQEEYDNTRGLYKRLLQ---RT-QHV-KVWISYAQFEL 559
Score = 46 (21.3 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 258 YYIR-RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMA 305
Y R R++FE+A + F E ++ F+ + +FE + V K A
Sbjct: 230 YVARGRKVFERAVEFFGEEQVSENLYVAFARFEEKQKEFERVRVIYKYA 278
>ASPGD|ASPL0000053069 [details] [associations]
symbol:AN1259 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0005681 EMBL:AACD01000017
GO:GO:0007049 Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869
RefSeq:XP_658863.1 STRING:Q5BDX1 GeneID:2877035 KEGG:ani:AN1259.2
HOGENOM:HOG000207972 OMA:KFTFAKI OrthoDB:EOG4NKG44 Uniprot:Q5BDX1
Length = 673
Score = 136 (52.9 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 55/221 (24%), Positives = 107/221 (48%)
Query: 83 EYETLNNTFERAL-VTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIW 141
E+ + FERAL V +P +WI Y+E+ + I AR DRA+ LP + D++W
Sbjct: 87 EFRRARSIFERALDVDSTSVP-LWIRYIESEMRNRNINHARNLLDRAVTILP--RVDKLW 143
Query: 142 EIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQ 201
Y+ E G I + +V+ R++ ++P + ++ K + E ER ++ Q
Sbjct: 144 YKYVYMEETLG-NIPGTRQVFERWMSWEPDE-GAWSAYIKLEKRYNEF-ERARAIF---Q 197
Query: 202 FYSIKGKTKHRLWLELCDLLTTHAT-----EISGLNVDAIIRGGIRKFTDEVGRLWTSLA 256
++I + R W++ + T E+ GL V+ + G F DE +L+ + A
Sbjct: 198 RFTIV-HPEPRNWIKWARFEEEYGTSDLVREVYGLAVETL--G--EDFMDE--KLFIAYA 250
Query: 257 DYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297
+ + + +E+AR I++ + + + + + +Y+ FE+
Sbjct: 251 RFETKLKEYERARAIYKYALDRLPRSKSIT-LHKAYTTFEK 290
Score = 110 (43.8 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 38/150 (25%), Positives = 68/150 (45%)
Query: 22 RNPFSLKLWWRYLVAKREAP-FKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPIT 80
RN ++ W RY + E F++ I+ERAL S LW Y IE S ++N I
Sbjct: 67 RNRINMNNWMRYAAWELEQKEFRRARSIFERALDVDSTSVPLWIRY-IE--SEMRNRNIN 123
Query: 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRI 140
H N +RA+ + ++ ++W Y+ + I R+ F+R + P +
Sbjct: 124 HAR-----NLLDRAVTILPRVDKLWYKYVYMEETLGNIPGTRQVFERWMSWEP---DEGA 175
Query: 141 WEIYLRFVEQEGIPIETSLRVYRRYLKYDP 170
W Y++ +E+ E + +++R+ P
Sbjct: 176 WSAYIK-LEKRYNEFERARAIFQRFTIVHP 204
Score = 86 (35.3 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 36/145 (24%), Positives = 69/145 (47%)
Query: 425 LWVAFAKLYETY--KDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGAL 481
LW+ +A L+E KDI AR ++ + ++ + +K A +W A+ E+R N + A
Sbjct: 366 LWIFYA-LWEEMEAKDIDRARQVYTECLKLIPHKKFT-FAKVWLMKAQFEVRQLNLQAAR 423
Query: 482 ELMRRATAE-PS-------VEVRRR----VAADGNEPVQMKLHKS-LRLWTFYVDLEESL 528
+ + +A P +++ R+ V Q++ + S + W Y +LE L
Sbjct: 424 KTLGQAIGMCPKDKLFRGYIDLERQLFEFVRCRTLYEKQIEWNPSNSQSWIQYAELERGL 483
Query: 529 GNLESTRAVYERILDL-RIATPQII 552
+ E RA+YE +D + P+++
Sbjct: 484 DDTERARAIYELGIDQPTLDMPELV 508
Score = 79 (32.9 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 33/128 (25%), Positives = 52/128 (40%)
Query: 26 SLKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEY 84
S+ LW RY+ ++ R + +RA+ LP KLW+ Y+ ++ N+P T
Sbjct: 105 SVPLWIRYIESEMRNRNINHARNLLDRAVTILPRVDKLWYKYVYMEETL-GNIPGTR--- 160
Query: 85 ETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIY 144
FER + + W Y++ +AR F R P R W +
Sbjct: 161 ----QVFERWM-SWEPDEGAWSAYIKLEKRYNEFERARAIFQRFTIVHP---EPRNWIKW 212
Query: 145 LRFVEQEG 152
RF E+ G
Sbjct: 213 ARFEEEYG 220
Score = 73 (30.8 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 517 LWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556
+W Y+D E+ G E R +YER+L + ++ INYA
Sbjct: 508 VWKAYIDFEDDEGEYERERQLYERLLQ-KTDHVKVWINYA 546
Score = 65 (27.9 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 26/108 (24%), Positives = 46/108 (42%)
Query: 451 QVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMK 510
++ K +D ++ E ++ + HK F A + +A E V AA +
Sbjct: 375 EMEAKDIDRARQVYTECLKL-IPHKKFTFAKVWLMKAQFE--VRQLNLQAARKTLGQAIG 431
Query: 511 LHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALL 558
+ +L+ Y+DLE L R +YE+ ++ + Q I YA L
Sbjct: 432 MCPKDKLFRGYIDLERQLFEFVRCRTLYEKQIEWNPSNSQSWIQYAEL 479
Score = 61 (26.5 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 31/118 (26%), Positives = 50/118 (42%)
Query: 425 LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELM 484
L++A+A+ K+ AR I+ A+ + SI A K F
Sbjct: 245 LFIAYARFETKLKEYERARAIYKYALD----RLPRSKSITLHKAYTTFE-KQFGD----- 294
Query: 485 RRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERIL 542
R E + +RRV + E ++ L ++ +W + LEE G+ E R VYER +
Sbjct: 295 -REGVENVILAKRRVQYE--EQLKENL-RNYDVWFDFARLEEQSGDPERVRDVYERAI 348
Score = 53 (23.7 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 27/131 (20%), Positives = 60/131 (45%)
Query: 352 VKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVE-QWHRRVKIFEGNPTKQILTYTEAV 410
+K+ + A ++ ++R P + S+ L + E Q+ R EG + ++ V
Sbjct: 256 LKEYERARAIYKYALDRLPR-SKSITLHKAYTTFEKQFGDR----EG--VENVILAKRRV 308
Query: 411 RTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAV-QV-------NYKTVDHLAS 462
+ + +K + + +W FA+L E D R ++++A+ Q+ +++ +L
Sbjct: 309 QYEEQLKENLRNYDVWFDFARLEEQSGDPERVRDVYERAIAQIPPSQEKRHWRRYIYLWI 368
Query: 463 IWCEWAEMELR 473
+ W EME +
Sbjct: 369 FYALWEEMEAK 379
Score = 49 (22.3 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 140 IWEIYLRFVEQEGIPIETSLRVYRRYL-KYDPS----HIEDFIEFLVKSKLWQE 188
+W + R EQ G P E VY R + + PS H +I + LW+E
Sbjct: 323 VWFDFARLEEQSGDP-ERVRDVYERAIAQIPPSQEKRHWRRYIYLWIFYALWEE 375
>SGD|S000004107 [details] [associations]
symbol:CLF1 "Member of the NineTeen Complex (NTC)"
species:4932 "Saccharomyces cerevisiae" [GO:0000785 "chromatin"
evidence=IDA] [GO:0000384 "first spliceosomal transesterification
activity" evidence=IC] [GO:0071007 "U2-type catalytic step 2
spliceosome" evidence=IDA] [GO:0071004 "U2-type prespliceosome"
evidence=IDA] [GO:0071008 "U2-type post-mRNA release spliceosomal
complex" evidence=IDA] [GO:0000974 "Prp19 complex" evidence=IDA]
[GO:0071006 "U2-type catalytic step 1 spliceosome" evidence=IDA]
[GO:0000354 "cis assembly of pre-catalytic spliceosome"
evidence=IMP;IPI] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006270 "DNA
replication initiation" evidence=IMP;IPI] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003688 "DNA replication
origin binding" evidence=IDA] [GO:0000386 "second spliceosomal
transesterification activity" evidence=IC] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
SGD:S000004107 GO:GO:0000785 GO:GO:0003682 EMBL:BK006945
GO:GO:0003688 GO:GO:0007049 GO:GO:0006270 Gene3D:1.25.40.10
EMBL:X89514 EMBL:U53877 GO:GO:0000974 GO:GO:0071006
eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI
OrthoDB:EOG4NKG44 EMBL:Z73289 PIR:S64954 RefSeq:NP_013218.1
ProteinModelPortal:Q12309 SMR:Q12309 DIP:DIP-1685N IntAct:Q12309
MINT:MINT-385873 STRING:Q12309 PaxDb:Q12309 PRIDE:Q12309
EnsemblFungi:YLR117C GeneID:850808 KEGG:sce:YLR117C CYGD:YLR117c
GeneTree:ENSGT00550000074931 NextBio:967040 Genevestigator:Q12309
GermOnline:YLR117C GO:GO:0071007 GO:GO:0071008 GO:GO:0071004
GO:GO:0000354 Uniprot:Q12309
Length = 687
Score = 127 (49.8 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 45/192 (23%), Positives = 87/192 (45%)
Query: 91 FERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQ 150
FERAL+ +WI Y++ K I AR +RA+ LP + D++W YL VE+
Sbjct: 88 FERALLVDSSFIPLWIRYIDAELKVKCINHARNLMNRAISTLP--RVDKLWYKYL-IVEE 144
Query: 151 EGIPIETSLRVYRRYLKYDP--SHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGK 208
+E +Y ++ +P + F++F ++ K W E + Y +
Sbjct: 145 SLNNVEIVRSLYTKWCSLEPGVNAWNSFVDFEIRQKNWNGVREIYSK-------Y-VMAH 196
Query: 209 TKHRLWLELCDLLTTHA-TEIS----GLNVDAIIR-GGIRKFTD-EVGRLWTSLADYYIR 261
+ + WL+ H TE + L +D + ++ ++D EV +L S A +
Sbjct: 197 PQMQTWLKWVRFENRHGNTEFTRSVYSLAIDTVANLQNLQIWSDMEVAKLVNSFAHWEAA 256
Query: 262 RELFEKARDIFE 273
++ +E++ +++
Sbjct: 257 QQEYERSSALYQ 268
Score = 92 (37.4 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 41/206 (19%), Positives = 95/206 (46%)
Query: 362 LEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQIL-TYTEAVRTVDPMKAVG 420
+E ++ + ++ +L N ++ + W + + + KQI+ T+ +A+ P K +
Sbjct: 297 IEETISYKRKMEYETILSNNAYDYDTWWLYLDLISESFPKQIMQTFEKAIVDSRP-KELS 355
Query: 421 KPHTLWVAFAKLYETY-----KDIANARV---IFDKAVQ--VNYKTVDHLASIWCEWAEM 470
K + W + L+ Y ++ N+ + +F + + + +K + IW +A+
Sbjct: 356 K-NVQWKRYIYLWMRYICYVELELENSLLEEELFQRLIDDIIPHKHFT-FSKIWLMYAKF 413
Query: 471 ELRHKNFKGALELMRRA--------TAEPSVEVRRRVAA-DGNEPVQMKLHK----SLRL 517
+RH + A +++ +A T + +E+ ++ D + K + L++
Sbjct: 414 LIRHDDVPKARKILGKAIGLCPKAKTFKGYIELEVKLKEFDRVRKIYEKFIEFQPSDLQI 473
Query: 518 WTFYVDLEESLGNLESTRAVYERILD 543
W+ Y +LEE+LG+ + R +Y LD
Sbjct: 474 WSQYGELEENLGDWDRVRGIYTIALD 499
Score = 56 (24.8 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 521 YVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLE 560
Y++LE L + R +YE+ ++ + + QI Y L E
Sbjct: 443 YIELEVKLKEFDRVRKIYEKFIEFQPSDLQIWSQYGELEE 482
Score = 45 (20.9 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 23/101 (22%), Positives = 42/101 (41%)
Query: 391 RVKIFEGNPTKQI-LTYTEAVRTVDPMKAVGKPHTL--WVAFAKLYETYKDIANARVIFD 447
+ K F+G ++ L + VR + +P L W + +L E D R I+
Sbjct: 436 KAKTFKGYIELEVKLKEFDRVRKIYEKFIEFQPSDLQIWSQYGELEENLGDWDRVRGIYT 495
Query: 448 KAVQVN--YKTVDHLASIWCEWAEMELRHKNFKGALELMRR 486
A+ N + T + + ++ E + F+ A +L RR
Sbjct: 496 IALDENSDFLTKEAKIVLLQKYITFETESQEFEKARKLYRR 536
>UNIPROTKB|F1MZT2 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:DAAA02035750 IPI:IPI01017666 Ensembl:ENSBTAT00000011148
Uniprot:F1MZT2
Length = 781
Score = 115 (45.5 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 47/174 (27%), Positives = 80/174 (45%)
Query: 378 LRQNPHNVEQWHRRVKIFEGNPTKQIL--TYTEAVRTVDPM--KAVGKPHT-LWVAFAKL 432
++ NPHN + W +++ E + + + Y A+ V P+ K K + LW+ +A L
Sbjct: 411 VKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPVQEKRHWKRYIYLWINYA-L 469
Query: 433 YETY--KDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATA 489
YE KD R ++ +++ + +K A +W +A+ E+R KN L RRA
Sbjct: 470 YEELEAKDPERTRQVYQASLELIPHKKFT-FAKMWLLYAQFEIRQKN----LPFARRALG 524
Query: 490 EPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543
S+ G P + KL K Y++LE L + R +YE+ L+
Sbjct: 525 T-SI---------GKCP-KNKLFKG------YIELELQLREFDRCRKLYEKFLE 561
Score = 104 (41.7 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 44/218 (20%), Positives = 94/218 (43%)
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWE 142
E + + +ERAL ++ +W+ Y E + + AR +DRA+ LP + ++ W
Sbjct: 180 EIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWY 237
Query: 143 IYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQF 202
Y E G I + +V+ R++++ P E + +L + +R A + +
Sbjct: 238 KYTYMEEMLG-NIAGARQVFERWMEWRPE--EQAWHSYINFELRYKEVDR-ARTIYERYI 293
Query: 203 YS-IKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEV--GRLWTSLADYY 259
+S + + W++ H V + F DE L+ + A +
Sbjct: 294 HSLVLVHPDVKNWIKYARFEEKHGYFAHARKV---YERAVEFFGDEHMDEHLYVAFAKFE 350
Query: 260 IRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297
++ FE+ R I++ + + + ++ +F +Y+ FE+
Sbjct: 351 ENQKEFERVRVIYKYALDRI-SKQEAQELFKNYTIFEK 387
Score = 95 (38.5 bits), Expect = 4.8e-08, Sum P(3) = 4.8e-08
Identities = 32/121 (26%), Positives = 55/121 (45%)
Query: 48 IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIM 107
IYERAL + LW Y + KN + H N ++RA+ T+ ++ + W
Sbjct: 187 IYERALDVDYRNITLWLKYAEMEM---KNRQVNHAR-----NIWDRAITTLPRVNQFWYK 238
Query: 108 Y--LETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRY 165
Y +E + I AR+ F+R + P ++ W Y+ F E ++ + +Y RY
Sbjct: 239 YTYMEEMLGN--IAGARQVFERWMEWRP---EEQAWHSYINF-ELRYKEVDRARTIYERY 292
Query: 166 L 166
+
Sbjct: 293 I 293
Score = 88 (36.0 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 35/145 (24%), Positives = 67/145 (46%)
Query: 425 LWVAFAKLYETY--KDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGAL 481
LW+ +A LYE KD R ++ +++ + +K A +W +A+ E+R KN A
Sbjct: 463 LWINYA-LYEELEAKDPERTRQVYQASLELIPHKKFT-FAKMWLLYAQFEIRQKNLPFAR 520
Query: 482 ELMRRATAE-PS-------VEVRRRVAA-DGNEPVQMKL----HKSLRLWTFYVDLEESL 528
+ + + P +E+ ++ D + K ++ W + +LE L
Sbjct: 521 RALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETIL 580
Query: 529 GNLESTRAVYE-RILDLRIATPQII 552
G++E RA+YE I R+ P+++
Sbjct: 581 GDIERARAIYELAISQPRLDMPEVL 605
Score = 87 (35.7 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 41/177 (23%), Positives = 77/177 (43%)
Query: 26 SLKLWWRYLVAKREAPFKKRFV-----IYERALKALPGSYKLWHAYLIERLSIVKNLPIT 80
++ LW +Y E K R V I++RA+ LP + W+ Y ++ N+
Sbjct: 198 NITLWLKYA----EMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYME-EMLGNIA-- 250
Query: 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHD-R 139
FER + + W Y+ K + +AR ++R + +L + D +
Sbjct: 251 -----GARQVFERWM-EWRPEEQAWHSYINFELRYKEVDRARTIYERYIHSLVLVHPDVK 304
Query: 140 IWEIYLRFVEQEGIPIETSLRVYRRYLKY-DPSHIED--FIEFLVKSKLWQEAAERL 193
W Y RF E+ G + +VY R +++ H+++ ++ F K + Q+ ER+
Sbjct: 305 NWIKYARFEEKHGY-FAHARKVYERAVEFFGDEHMDEHLYVAF-AKFEENQKEFERV 359
Score = 73 (30.8 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 34/119 (28%), Positives = 52/119 (43%)
Query: 425 LWVAFAKLYETYKDIANARVIFDKAV-QVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
L+VAFAK E K+ RVI+ A+ +++ + L + + K F
Sbjct: 342 LYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQEL------FKNYTIFEKKFGD---- 391
Query: 484 MRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERIL 542
RR E + +RR + E V+ H + W Y+ L ES E+ R VYER +
Sbjct: 392 -RRGI-EDIIVSKRRFQYE--EEVKANPH-NYDAWFDYLRLVESDAEAETVREVYERAI 445
Score = 71 (30.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
T W+ FA+L DI AR I++ A+ + +D +W + + E+ + + L
Sbjct: 568 TSWIKFAELETILGDIERARAIYELAI--SQPRLDMPEVLWKSYIDFEIEQEETERTRNL 625
Query: 484 MRR 486
RR
Sbjct: 626 YRR 628
Score = 42 (19.8 bits), Expect = 4.8e-08, Sum P(3) = 4.8e-08
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLS 310
R+++E+A + F + M F+ ++ +FE + V K A +S
Sbjct: 323 RKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRIS 371
>TAIR|locus:2152965 [details] [associations]
symbol:AT5G41770 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002688
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 KO:K12869 OMA:KFTFAKI
IPI:IPI00530971 RefSeq:NP_198992.2 UniGene:At.9341
ProteinModelPortal:F4JZX8 SMR:F4JZX8 PRIDE:F4JZX8
EnsemblPlants:AT5G41770.1 GeneID:834182 KEGG:ath:AT5G41770
Uniprot:F4JZX8
Length = 705
Score = 120 (47.3 bits), Expect = 9.1e-09, Sum P(2) = 9.1e-09
Identities = 29/114 (25%), Positives = 58/114 (50%)
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWE 142
+Y + +ERA+ ++ +W+ Y E KF+ AR +DRA+ LP + D++W
Sbjct: 107 DYARARSVWERAIEGDYRNHTLWLKYAEFEMKNKFVNSARNVWDRAVTLLP--RVDQLWY 164
Query: 143 IYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASV 196
Y+ E G I + +++ R++ + P + ++ F +K +L ER ++
Sbjct: 165 KYIHMEEILG-NIAGARQIFERWMDWSPDQ-QGWLSF-IKFELRYNEIERARTI 215
Score = 100 (40.3 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 35/158 (22%), Positives = 70/158 (44%)
Query: 22 RNPFSLKLWWRYLVAKREAPFKKRF-VIYERALKALPGSY--KLWHAYLIERLSIVKNLP 78
++P + W+ Y+ + K R IYERA+ +P + + W Y+ ++
Sbjct: 336 KSPSNYDSWFDYVRLEESVGNKDRIREIYERAIANVPPAEEKRYWQRYIYLWINYALFEE 395
Query: 79 ITHPEYETLNNTFERALVTM-HK---MPRIWIMYLETLTSQKFITKARRTFDRALCALPV 134
I + E + + L + H +IW++ + Q +T AR+ A+ P
Sbjct: 396 IETEDIERTRDVYRECLKLIPHSKFSFAKIWLLAAQFEIRQLNLTGARQILGNAIGKAP- 454
Query: 135 TQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSH 172
D+I++ Y+ Q G ++ ++Y RYL++ P +
Sbjct: 455 --KDKIFKKYIEIELQLG-NMDRCRKLYERYLEWSPEN 489
Score = 95 (38.5 bits), Expect = 9.1e-09, Sum P(2) = 9.1e-09
Identities = 33/130 (25%), Positives = 63/130 (48%)
Query: 425 LWVAFAKLYETYK--DIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALE 482
LW+ +A L+E + DI R ++ + +++ + A IW A+ E+R N GA +
Sbjct: 386 LWINYA-LFEEIETEDIERTRDVYRECLKLIPHSKFSFAKIWLLAAQFEIRQLNLTGARQ 444
Query: 483 LMRRATAE-PSVEV-RRRVAAD---GNEPVQMKLHK--------SLRLWTFYVDLEESLG 529
++ A + P ++ ++ + + GN KL++ + W+ Y +LE SL
Sbjct: 445 ILGNAIGKAPKDKIFKKYIEIELQLGNMDRCRKLYERYLEWSPENCYAWSKYAELERSLV 504
Query: 530 NLESTRAVYE 539
E RA++E
Sbjct: 505 ETERARAIFE 514
Score = 90 (36.7 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 517 LWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556
LW Y+D E S G LE TRA+YER+LD R ++ +++A
Sbjct: 528 LWKAYIDFEISEGELERTRALYERLLD-RTKHYKVWVSFA 566
Score = 85 (35.0 bits), Expect = 0.00046, Sum P(3) = 0.00046
Identities = 32/159 (20%), Positives = 73/159 (45%)
Query: 22 RNPFSLKLWWRYLV-AKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPIT 80
R +++++W +Y + + + + ++ERA++ ++ LW Y + KN +
Sbjct: 87 RARWNIQVWVKYAQWEESQKDYARARSVWERAIEGDYRNHTLWLKYAEFEM---KNKFVN 143
Query: 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRI 140
+ N ++RA+ + ++ ++W Y+ I AR+ F+R + P Q
Sbjct: 144 -----SARNVWDRAVTLLPRVDQLWYKYIHMEEILGNIAGARQIFERWMDWSPDQQG--- 195
Query: 141 WEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEF 179
W +++F E IE + +Y R++ P + +I +
Sbjct: 196 WLSFIKF-ELRYNEIERARTIYERFVLCHPK-VSAYIRY 232
Score = 84 (34.6 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 43/148 (29%), Positives = 68/148 (45%)
Query: 425 LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELM 484
L+VAFA+ E K++ AR I+ A+ DH+ E +L K +
Sbjct: 265 LFVAFAEFEERCKEVERARFIYKFAL-------DHIPKGRAE----DLYRKFVAFEKQYG 313
Query: 485 RRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER-ILD 543
+ E ++ +RR + + V+ K + W YV LEES+GN + R +YER I +
Sbjct: 314 DKEGIEDAIVGKRRFQYE--DEVR-KSPSNYDSWFDYVRLEESVGNKDRIREIYERAIAN 370
Query: 544 LRIATPQ--------IIINYALLLEVWT 563
+ A + + INYAL E+ T
Sbjct: 371 VPPAEEKRYWQRYIYLWINYALFEEIET 398
Score = 63 (27.2 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 31/168 (18%), Positives = 71/168 (42%)
Query: 378 LRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYK 437
+R++P N + W V++ E K + + A K + W + L+ Y
Sbjct: 334 VRKSPSNYDSWFDYVRLEESVGNKDRIREIYERAIANVPPAEEKRY--WQRYIYLWINY- 390
Query: 438 DIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRR 497
+F+ ++ + ++ ++ E ++ + H F A + A E+R+
Sbjct: 391 ------ALFE---EIETEDIERTRDVYRECLKL-IPHSKFSFAKIWLLAA----QFEIRQ 436
Query: 498 RVAADGNEPVQMKLHKSLR--LWTFYVDLEESLGNLESTRAVYERILD 543
+ + + K+ + ++ Y+++E LGN++ R +YER L+
Sbjct: 437 LNLTGARQILGNAIGKAPKDKIFKKYIEIELQLGNMDRCRKLYERYLE 484
Score = 50 (22.7 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 20/100 (20%), Positives = 40/100 (40%)
Query: 378 LRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMK----AVGKPHTLWVAFAKLY 433
L +P N W + ++ ++ L TE R + + A+ P LW A+
Sbjct: 483 LEWSPENCYAWSKYAEL------ERSLVETERARAIFELAISQPALDMPELLWKAYIDFE 536
Query: 434 ETYKDIANARVIFDKAVQ--VNYKTVDHLASIWCEWAEME 471
+ ++ R ++++ + +YK A AE+E
Sbjct: 537 ISEGELERTRALYERLLDRTKHYKVWVSFAKFEASAAELE 576
Score = 42 (19.8 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 15/74 (20%), Positives = 33/74 (44%)
Query: 408 EAVRTVDPMKAVGKPH-TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCE 466
E RT+ + P + ++ +AK ++A R ++++A + + ++
Sbjct: 210 ERARTIYERFVLCHPKVSAYIRYAKFEMKGGEVARCRSVYERATE-KLADDEEAEILFVA 268
Query: 467 WAEMELRHKNFKGA 480
+AE E R K + A
Sbjct: 269 FAEFEERCKEVERA 282
Score = 37 (18.1 bits), Expect = 9.6e-08, Sum P(3) = 9.6e-08
Identities = 7/32 (21%), Positives = 18/32 (56%)
Query: 464 WCEWAEMELRHKNFKGALELMRRATAEPSVEV 495
W ++AE+E + A + A ++P++++
Sbjct: 493 WSKYAELERSLVETERARAIFELAISQPALDM 524
>UNIPROTKB|F1PYE9 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
Ensembl:ENSCAFT00000008599 Uniprot:F1PYE9
Length = 797
Score = 121 (47.7 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 46/219 (21%), Positives = 95/219 (43%)
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWE 142
E + + +ERAL ++ +W+ Y E + + AR +DRA+ LP + ++ W
Sbjct: 201 EIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWY 258
Query: 143 IYLRFVEQEGIPIETSLRVYRRYLKYDPSHI--EDFIEFLVKSKLWQEAAERLASVLNDD 200
Y E G I + +V+ R++++ P +I F ++ K + A + LN
Sbjct: 259 KYTYMEEMLG-NIAGARQVFERWMEWQPEEQAWHSYINFELRYKE-VDRARTIYYFLNSP 316
Query: 201 QFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEV--GRLWTSLADY 258
+ + K+ W++ H V + F DE L+ + A +
Sbjct: 317 ELVLVHPDVKN--WIKYARFEEKHGYFAHARKV---YERAVEFFGDEHMDEHLYVAFAKF 371
Query: 259 YIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297
++ FE+ R I++ + + + ++ +F +Y+ FE+
Sbjct: 372 EENQKEFERVRVIYKYALDRI-SKQEAQELFKNYTIFEK 409
Score = 109 (43.4 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 22/69 (31%), Positives = 43/69 (62%)
Query: 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMR 485
W+ +A+ E+ K+I AR I+++A+ V+Y+ + ++W ++AEME++++ A +
Sbjct: 189 WIKYAQWEESLKEIQRARSIYERALDVDYRNI----TLWLKYAEMEMKNRQVNHARNIWD 244
Query: 486 RA-TAEPSV 493
RA T P V
Sbjct: 245 RAITTLPRV 253
Score = 94 (38.1 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 36/145 (24%), Positives = 69/145 (47%)
Query: 425 LWVAFAKLYETY--KDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGAL 481
LWV +A LYE KD R ++ +++ + +K A +W +A+ E+R KN ++
Sbjct: 485 LWVNYA-LYEELEAKDPERTRQVYQASLELIPHKKFT-FAKMWLLYAQFEIRQKNLPVSV 542
Query: 482 ELMRRATAE-PS-------VEVRRRVAA-DGNEPVQMKL----HKSLRLWTFYVDLEESL 528
L+ + + P +E+ ++ D + K ++ W + +LE L
Sbjct: 543 SLLGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETIL 602
Query: 529 GNLESTRAVYE-RILDLRIATPQII 552
G++E RA+YE I R+ P+++
Sbjct: 603 GDIERARAIYELAISQPRLDMPEVL 627
Score = 82 (33.9 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 28/102 (27%), Positives = 46/102 (45%)
Query: 48 IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIM 107
IYERAL + LW Y + KN + H N ++RA+ T+ ++ + W
Sbjct: 208 IYERALDVDYRNITLWLKYAEMEM---KNRQVNHAR-----NIWDRAITTLPRVNQFWYK 259
Query: 108 Y--LETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRF 147
Y +E + I AR+ F+R + P ++ W Y+ F
Sbjct: 260 YTYMEEMLGN--IAGARQVFERWMEWQP---EEQAWHSYINF 296
Score = 71 (30.1 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
T W+ FA+L DI AR I++ A+ + +D +W + + E+ + + L
Sbjct: 590 TSWIKFAELETILGDIERARAIYELAI--SQPRLDMPEVLWKSYIDFEIEQEETERTRNL 647
Query: 484 MRR 486
RR
Sbjct: 648 YRR 650
Score = 59 (25.8 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 517 LWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556
LW Y+D E E TR +Y R+L R ++ I++A
Sbjct: 627 LWKSYIDFEIEQEETERTRNLYRRLLQ-RTQHVKVWISFA 665
Score = 42 (19.8 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLS 310
R+++E+A + F + M F+ ++ +FE + V K A +S
Sbjct: 345 RKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRIS 393
>WB|WBGene00019762 [details] [associations]
symbol:M03F8.3 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0018996
GO:GO:0040011 GO:GO:0000003 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:FO080495
RefSeq:NP_001122979.1 ProteinModelPortal:A9D4S6 SMR:A9D4S6
STRING:A9D4S6 PaxDb:A9D4S6 EnsemblMetazoa:M03F8.3b GeneID:178979
KEGG:cel:CELE_M03F8.3 UCSC:M03F8.3a CTD:178979 WormBase:M03F8.3b
InParanoid:A9D4S6 NextBio:903380 ArrayExpress:A9D4S6 Uniprot:A9D4S6
Length = 747
Score = 134 (52.2 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 55/219 (25%), Positives = 99/219 (45%)
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWE 142
E + + FERAL H+ IW+ Y E K I AR FDRA+ +P + W
Sbjct: 101 EIQRARSVFERALDVDHRSISIWLQYAEMEMRCKQINHARNVFDRAITIMPRAM--QFWL 158
Query: 143 IYLRFVEQ--EGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDD 200
Y ++E+ E IP + +++ R+++++P E + + +L + +R SV
Sbjct: 159 KY-SYMEEVIENIP--GARQIFERWIEWEPP--EQAWQTYINFELRYKEIDRARSVYQ-- 211
Query: 201 QFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDE-VGR-LWTSLADY 258
+F + G W++ + G N A + F +E + + + A +
Sbjct: 212 RFLHVHGINVQN-WIKYAKFEERNG--YIG-NARAAYEKAMEYFGEEDINETVLVAFALF 267
Query: 259 YIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297
R++ E+AR IF+ G+ + + R IF Y+Q E+
Sbjct: 268 EERQKEHERARGIFKYGLDNLPSNRT-EEIFKHYTQHEK 305
Score = 97 (39.2 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 37/159 (23%), Positives = 69/159 (43%)
Query: 22 RNPFSLKLWWRYLVAKRE-APFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPIT 80
+N L W +Y + ++ ++ERAL S +W Y + + I
Sbjct: 81 KNRMQLANWIKYGKWEESIGEIQRARSVFERALDVDHRSISIWLQYAEMEMRCKQ---IN 137
Query: 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRI 140
H N F+RA+ M + + W+ Y + I AR+ F+R + P Q
Sbjct: 138 HAR-----NVFDRAITIMPRAMQFWLKYSYMEEVIENIPGARQIFERWIEWEPPEQ---A 189
Query: 141 WEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEF 179
W+ Y+ F E I+ + VY+R+L +++++I++
Sbjct: 190 WQTYINF-ELRYKEIDRARSVYQRFLHVHGINVQNWIKY 227
Score = 74 (31.1 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 42/195 (21%), Positives = 86/195 (44%)
Query: 377 LLRQNPHNVEQWHRRVKIFEGNPT--KQIL-TYTEAVRTVDPMKAVGKPHTLWVAFAKL- 432
++ +N +N + W +++ E T +++ Y A+ + P + + W + L
Sbjct: 328 MVEENGYNYDAWFDYLRLLENEETDREEVEDVYERAIANIPP-HSYFQEKRYWRRYIYLW 386
Query: 433 --YETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE 490
Y Y+++ A+ FD+A QV +D + +A++ + +F+ +R+
Sbjct: 387 INYALYEELV-AKD-FDRARQVYKACIDIIPHKTFTFAKVWIMFAHFE-----IRQLDLN 439
Query: 491 PSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550
+ ++ A G P +L+ Y+DLE L + R +YE+ L+ + Q
Sbjct: 440 AARKIMG--VAIGKCPKD-------KLFRAYIDLELQLREFDRCRKLYEKFLESSPESSQ 490
Query: 551 IIINYALLLEVWTLL 565
I +A E+ TLL
Sbjct: 491 TWIKFA---ELETLL 502
Score = 64 (27.6 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 33/164 (20%), Positives = 74/164 (45%)
Query: 418 AVGK-PHT-LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK 475
A+GK P L+ A+ L ++ R +++K ++ + ++ + W ++AE+E
Sbjct: 448 AIGKCPKDKLFRAYIDLELQLREFDRCRKLYEKFLESSPES----SQTWIKFAELETLLG 503
Query: 476 NFKGALELMRRATAEPSVEVRR---------RVAADGNEPVQMKLHKSL-------RLWT 519
+ + + A +P++++ +A + +E + L+++L ++W
Sbjct: 504 DTDRSRAVFTIAVQQPALDMPELLWKAYIDFEIACEEHEKAR-DLYETLLQRTNHIKVWI 562
Query: 520 FYVDLEESLGNLESTRAVYERI-LDLRIATPQIIINYALLLEVW 562
+ E+++GN E R +ER L A + +LLE W
Sbjct: 563 SMAEFEQTIGNFEGARKAFERANQSLENAEKE---ERLMLLEAW 603
>DICTYBASE|DDB_G0278819 [details] [associations]
symbol:DDB_G0278819 "HAT repeat-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
dictyBase:DDB_G0278819 GO:GO:0005737 GenomeReviews:CM000152_GR
GO:GO:0016607 GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10
EMBL:AAFI02000024 GO:GO:0000245 eggNOG:NOG327505 KO:K12869
OMA:KFTFAKI RefSeq:XP_641986.1 ProteinModelPortal:Q54XP4
STRING:Q54XP4 PRIDE:Q54XP4 EnsemblProtists:DDB0233480
GeneID:8621718 KEGG:ddi:DDB_G0278819 ProtClustDB:CLSZ2729102
Uniprot:Q54XP4
Length = 705
Score = 128 (50.1 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 52/215 (24%), Positives = 101/215 (46%)
Query: 89 NTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFV 148
+ FER L H++P +WI Y E K I AR +DRA+C LP + ++W Y F+
Sbjct: 96 SVFERFLDIDHRIPTVWIKYAEMEMKNKNINLARNIWDRAVCLLP--RVSQLWFKYT-FM 152
Query: 149 EQEGIPIETSLRVYRRYLKY--DPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIK 206
E + ++ R++++ +P +++F + KL++ RL +++ +
Sbjct: 153 EDMLGNYPAARAIFERWMQWKPEPQAWNSYLKFEQRLKLFENT--RLIF----EKYILVH 206
Query: 207 GKTKHRLWLELCDLLTTHATEISGL-NVDAIIRGGIRKFTDEVG---RLWTSLADYYIRR 262
K W++ T + + N I + I +F E G +L+ + A + +
Sbjct: 207 PYIK--TWIKY----TKFEERLGNIENARTIFQRAI-EFLGEDGNDEQLFIAFAKFEEKY 259
Query: 263 ELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297
+ E+AR I++ + V R +FD+++ FE+
Sbjct: 260 KEIERARVIYKYAIDHVPKSRAKD-LFDTFTNFEK 293
Score = 115 (45.5 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 48/182 (26%), Positives = 84/182 (46%)
Query: 361 RLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKA 418
RL+ N R +L+ +P+ ++ W + K E GN + T + R ++ +
Sbjct: 188 RLKLFENTRLIFEKYILV--HPY-IKTWIKYTKFEERLGN-IENARTIFQ--RAIEFLGE 241
Query: 419 VGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFK 478
G L++AFAK E YK+I ARVI+ A+ ++ ++ + E +H +
Sbjct: 242 DGNDEQLFIAFAKFEEKYKEIERARVIYKYAI--DHVPKSRAKDLFDTFTNFEKQHGD-- 297
Query: 479 GALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVY 538
R E V ++R + E ++ K K+ +W Y+ +EE G +E TR +Y
Sbjct: 298 -------RIGIEDVVLGKKRFQYE--EEIK-KNSKNYDIWFDYLKMEEINGEIEKTREIY 347
Query: 539 ER 540
ER
Sbjct: 348 ER 349
Score = 107 (42.7 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 32/132 (24%), Positives = 65/132 (49%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
T+W+ +A++ K+I AR I+D+AV + + ++ +W ++ ME N+ A +
Sbjct: 110 TVWIKYAEMEMKNKNINLARNIWDRAVCL----LPRVSQLWFKYTFMEDMLGNYPAARAI 165
Query: 484 MRRATA---EPS-----VEVRRRVAADGNEPVQMK----LHKSLRLWTFYVDLEESLGNL 531
R EP ++ +R+ N + + +H ++ W Y EE LGN+
Sbjct: 166 FERWMQWKPEPQAWNSYLKFEQRLKLFENTRLIFEKYILVHPYIKTWIKYTKFEERLGNI 225
Query: 532 ESTRAVYERILD 543
E+ R +++R ++
Sbjct: 226 ENARTIFQRAIE 237
Score = 104 (41.7 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 61/276 (22%), Positives = 124/276 (44%)
Query: 48 IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIM 107
I++RA+ LP +LW Y + ++++ +P + FER + + P+ W
Sbjct: 131 IWDRAVCLLPRVSQLWFKY-----TFMEDMLGNYPAARAI---FERWMQWKPE-PQAWNS 181
Query: 108 YLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLK 167
YL+ K R F++ + P + + W Y +F E+ G IE + +++R ++
Sbjct: 182 YLKFEQRLKLFENTRLIFEKYILVHP---YIKTWIKYTKFEERLG-NIENARTIFQRAIE 237
Query: 168 Y---DPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTH 224
+ D + + FI F + ++E ER A V+ Y+I K R +L D T
Sbjct: 238 FLGEDGNDEQLFIAFAKFEEKYKEI-ER-ARVIYK---YAIDHVPKSRA-KDLFDTFTNF 291
Query: 225 ATEISG-LNVDAIIRGGIR-KFTDEV---GRLWTSLADYYIRREL---FEKARDIFEEGM 276
+ + ++ ++ G R ++ +E+ + + DY E+ EK R+I+E +
Sbjct: 292 EKQHGDRIGIEDVVLGKKRFQYEEEIKKNSKNYDIWFDYLKMEEINGEIEKTREIYERSI 351
Query: 277 MTVVTVRD------FSVIFDSYSQFEEIMVSAKMAK 306
+ + + ++ +Y+ FEE+ +S M +
Sbjct: 352 GNLPPTNEKKHWKRYIYLWINYALFEEL-ISKDMER 386
Score = 96 (38.9 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 35/165 (21%), Positives = 72/165 (43%)
Query: 22 RNPFSLKLWWRYLVAKR-EAPFKKRFVIYERALKALP--GSYKLWHAYLIERLSIVKNLP 78
+N + +W+ YL + +K IYER++ LP K W Y+ ++
Sbjct: 319 KNSKNYDIWFDYLKMEEINGEIEKTREIYERSIGNLPPTNEKKHWKRYIYLWINYALFEE 378
Query: 79 ITHPEYETLNNTFERALVTM-HK---MPRIWIMYLETLTSQKFITKARRTFDRALCALPV 134
+ + E + + + + HK +IWI+Y Q + KAR + +A+ P
Sbjct: 379 LISKDMERARSVYSECIKLIPHKEFSFSKIWILYANFEIRQLNLDKARLIYGQAIGRNPK 438
Query: 135 TQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEF 179
+ +I++ Y+ + G + +Y +YL+ P + + + +F
Sbjct: 439 S---KIFDQYIHLEIELG-NFDRVRTLYEKYLEIMPDNCDAWCKF 479
Score = 79 (32.9 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 33/144 (22%), Positives = 63/144 (43%)
Query: 425 LWVAFAKLYETY-KDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGALE 482
LW+ +A E KD+ AR ++ + ++ + +K + IW +A E+R N A
Sbjct: 369 LWINYALFEELISKDMERARSVYSECIKLIPHKEFS-FSKIWILYANFEIRQLNLDKARL 427
Query: 483 LMRRATAE-PSVEV-RRRVAAD---GN-EPVQMKLHKSLRL-------WTFYVDLEESLG 529
+ +A P ++ + + + GN + V+ K L + W + LE LG
Sbjct: 428 IYGQAIGRNPKSKIFDQYIHLEIELGNFDRVRTLYEKYLEIMPDNCDAWCKFAQLETELG 487
Query: 530 NLESTRAVYE-RILDLRIATPQII 552
RA++E I + P+++
Sbjct: 488 ETVRARAIFELAIQQPNLDRPEVV 511
Score = 73 (30.8 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMR 485
W FA+L + AR IF+ A+Q +D +W ++ + E++ K F +L R
Sbjct: 476 WCKFAQLETELGETVRARAIFELAIQ--QPNLDRPEVVWKDFIDSEIQLKQFDFVKQLYR 533
Query: 486 R 486
+
Sbjct: 534 K 534
Score = 64 (27.6 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 24/125 (19%), Positives = 54/125 (43%)
Query: 414 DPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELR 473
+ +K K + +W + K+ E +I R I+++++ N + W + + +
Sbjct: 315 EEIKKNSKNYDIWFDYLKMEEINGEIEKTREIYERSIG-NLPPTNEKKH-WKRYIYLWIN 372
Query: 474 HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLES 533
+ F+ EL+ + +E R V ++ + + K ++W Y + E NL+
Sbjct: 373 YALFE---ELISK-----DMERARSVYSECIKLIPHKEFSFSKIWILYANFEIRQLNLDK 424
Query: 534 TRAVY 538
R +Y
Sbjct: 425 ARLIY 429
Score = 63 (27.2 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 91 FERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQ 150
+E L K I+I Y SQK +T+AR F+R L H RI +++++ E
Sbjct: 64 YESLLGRNRKTAAIYIKYAAWEESQKDLTRARSVFERFLDI----DH-RIPTVWIKYAEM 118
Query: 151 E 151
E
Sbjct: 119 E 119
Score = 62 (26.9 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 38/173 (21%), Positives = 76/173 (43%)
Query: 378 LRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVG-KPHTLWVAFAKLYETY 436
+++N N + W +K+ E N + T R++ + K H W + L+ Y
Sbjct: 317 IKKNSKNYDIWFDYLKMEEINGEIE-KTREIYERSIGNLPPTNEKKH--WKRYIYLWINY 373
Query: 437 KDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEP---SV 493
+F++ + K ++ S++ E ++ + HK F + + A E ++
Sbjct: 374 -------ALFEELIS---KDMERARSVYSECIKL-IPHKEFSFSKIWILYANFEIRQLNL 422
Query: 494 EVRRRV--AADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL 544
+ R + A G P KS +++ Y+ LE LGN + R +YE+ L++
Sbjct: 423 DKARLIYGQAIGRNP------KS-KIFDQYIHLEIELGNFDRVRTLYEKYLEI 468
>CGD|CAL0004743 [details] [associations]
symbol:orf19.332 species:5476 "Candida albicans" [GO:0071007
"U2-type catalytic step 2 spliceosome" evidence=IEA] [GO:0071004
"U2-type prespliceosome" evidence=IEA] [GO:0071006 "U2-type
catalytic step 1 spliceosome" evidence=IEA] [GO:0071008 "U2-type
post-mRNA release spliceosomal complex" evidence=IEA] [GO:0000785
"chromatin" evidence=IEA] [GO:0000974 "Prp19 complex" evidence=IEA]
[GO:0000354 "cis assembly of pre-catalytic spliceosome"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0003688 "DNA replication origin binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
Pfam:PF05843 SMART:SM00386 GO:GO:0008380 GO:GO:0006397
GO:GO:0005681 GO:GO:0007049 Gene3D:1.25.40.10 EMBL:AACQ01000027
EMBL:AACQ01000026 RefSeq:XP_720027.1 RefSeq:XP_720159.1
ProteinModelPortal:Q5AED6 STRING:Q5AED6 GeneID:3638214
GeneID:3638364 KEGG:cal:CaO19.332 KEGG:cal:CaO19.7964
eggNOG:NOG327505 KO:K12869 Uniprot:Q5AED6
Length = 758
Score = 111 (44.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 38/152 (25%), Positives = 64/152 (42%)
Query: 22 RNPFSLKLWWRYLVAKREA--PFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPI 79
+N +L W RY + E F + I ERAL W Y+ L +
Sbjct: 115 KNRLNLGQWTRYAKWEIENNHDFPRARSILERALDVNIQHVPFWIQYI--------QLEL 166
Query: 80 THPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDR 139
+H N ERA+ T+ ++ ++W +Y++T K R F+R L P T
Sbjct: 167 SHKNINHARNLMERAINTLPRVNKLWFLYVQTEEMLKNYPMVRAVFERWLDWHPDTS--- 223
Query: 140 IWEIYLRFVEQEGIPIETSLRVYRRYLKYDPS 171
+W+ Y+ F E E ++++Y+ P+
Sbjct: 224 VWDAYINF-EARYEEKENVRTIFKKYVHEFPN 254
Score = 94 (38.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 39/193 (20%), Positives = 94/193 (48%)
Query: 365 LMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQIL--TYTEAVRTV--DPMKAVG 420
L+ RR + + + +P++ + W + + + + + K L + + V D K++
Sbjct: 368 LIKRRIKYEQEI--QNDPYDYDSWWKYMTLLQNSSNKSDLENAFKKVTGNVVHDKHKSIK 425
Query: 421 -KPHTL-WVAFAKLYE-TYKDIANARVIFDKAVQV-NYKTVDHLASIWCEWAEMELRHKN 476
+ + + W+ +A E T + +AR I++ ++V +K+ A +W ++E ELR+
Sbjct: 426 WRRYIMFWIWYAFWEEMTNNNPDSAREIWNNCLKVIPHKSFT-FAKVWIGYSEFELRN-- 482
Query: 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHK-SLRLWTFYVDLEESLGNLESTR 535
+E + R++ G Q ++K ++++ +Y+DLE+ LG+ R
Sbjct: 483 ------------SEDGLAKARKIL--GRAIGQTSINKPKIKIFKYYIDLEKKLGDWNRVR 528
Query: 536 AVYERILDLRIAT 548
++++ L++ + T
Sbjct: 529 LLFQKWLEVSLLT 541
>FB|FBgn0000377 [details] [associations]
symbol:crn "crooked neck" species:7227 "Drosophila
melanogaster" [GO:0007443 "Malpighian tubule morphogenesis"
evidence=IMP] [GO:0007417 "central nervous system development"
evidence=NAS] [GO:0005634 "nucleus" evidence=IC;NAS] [GO:0007422
"peripheral nervous system development" evidence=NAS] [GO:0048663
"neuron fate commitment" evidence=NAS] [GO:0007405 "neuroblast
proliferation" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007438 "oenocyte development"
evidence=IMP] [GO:0008347 "glial cell migration" evidence=IMP]
[GO:0008366 "axon ensheathment" evidence=IMP] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0051298 "centrosome
duplication" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 GO:GO:0005813
GO:GO:0051298 GO:GO:0016607 EMBL:AE014298 GO:GO:0007438
Gene3D:1.25.40.10 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GO:GO:0008347 GO:GO:0072686 GO:GO:0007443 GO:GO:0000381
GO:GO:0008366 eggNOG:NOG327505 KO:K12869 OMA:KFTFAKI
GeneTree:ENSGT00550000074931 EMBL:X58374 EMBL:AL009195
EMBL:AY051666 PIR:T13427 RefSeq:NP_477118.1 UniGene:Dm.3140
ProteinModelPortal:P17886 SMR:P17886 DIP:DIP-17429N IntAct:P17886
MINT:MINT-282072 STRING:P17886 PaxDb:P17886
EnsemblMetazoa:FBtr0070418 GeneID:31208 KEGG:dme:Dmel_CG3193
CTD:12935 FlyBase:FBgn0000377 HOGENOM:HOG000264173
InParanoid:P17886 OrthoDB:EOG4J9KDW PhylomeDB:P17886
GenomeRNAi:31208 NextBio:772455 Bgee:P17886 GermOnline:CG3193
Uniprot:P17886
Length = 702
Score = 112 (44.5 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 44/217 (20%), Positives = 99/217 (45%)
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWE 142
E + + +ERAL H+ +W+ Y E K + AR +DRA+ +P + ++ W
Sbjct: 91 EIQRARSIWERALDNEHRNVTLWLKYAEMEMKNKQVNHARNLWDRAVTIMP--RVNQFWY 148
Query: 143 IYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQF 202
Y ++E+ + + +V+ R++++ P E + V +L + +R + ++F
Sbjct: 149 KYT-YMEEMLENVAGARQVFERWMEWQPE--EQAWQTYVNFELRYKEIDRAREIY--ERF 203
Query: 203 YSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEV--GRLWTSLADYYI 260
+ K+ W++ +H I G + + F D+ RL+ + A +
Sbjct: 204 VYVHPDVKN--WIKFARFEESHGF-IHGSR--RVFERAVEFFGDDYIEERLFIAFARFEE 258
Query: 261 RRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297
++ ++AR I++ + + R +F +Y++ E+
Sbjct: 259 GQKEHDRARIIYKYALDHLPKDRT-QELFKAYTKHEK 294
Score = 90 (36.7 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 46/171 (26%), Positives = 75/171 (43%)
Query: 381 NPHNVEQWHRRVKIFEGNPTK-QIL-TYTEAVRTVDPM--KAVGKPHT-LWVAFAKLYET 435
NP N + W +++ E + QI TY A+ V P K + + LW+ +A LYE
Sbjct: 321 NPTNYDAWFDYLRLIEAEGDRDQIRETYERAISNVPPANEKNFWRRYIYLWINYA-LYEE 379
Query: 436 YK--DIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS 492
+ D R I+ ++ + +K + +W +A+ E+R K + A R+A
Sbjct: 380 LEAEDAERTRQIYKTCLELIPHKQFT-FSKLWLLYAQFEIRCKELQRA----RKALG--- 431
Query: 493 VEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543
A G P + KL + Y+DLE L E R +YE+ L+
Sbjct: 432 -------LAIGMCP-RDKLFRG------YIDLEIQLREFERCRMLYEKFLE 468
Score = 79 (32.9 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 35/158 (22%), Positives = 68/158 (43%)
Query: 26 SLKLWWRYL-VAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEY 84
++ LW +Y + + +++RA+ +P + W+ Y +++N+
Sbjct: 109 NVTLWLKYAEMEMKNKQVNHARNLWDRAVTIMPRVNQFWYKYTYME-EMLENVA------ 161
Query: 85 ETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIY 144
FER + + + W Y+ K I +AR ++R + P ++ W +
Sbjct: 162 -GARQVFERWMEWQPE-EQAWQTYVNFELRYKEIDRAREIYERFVYVHPDVKN---WIKF 216
Query: 145 LRFVEQEGIPIETSLRVYRRYLKY-DPSHIED--FIEF 179
RF E G I S RV+ R +++ +IE+ FI F
Sbjct: 217 ARFEESHGF-IHGSRRVFERAVEFFGDDYIEERLFIAF 253
Score = 75 (31.5 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 508 QMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543
Q +L LW Y+D E +LG E R +YER+L+
Sbjct: 503 QPRLDMPELLWKAYIDFEVALGETELARQLYERLLE 538
Score = 73 (30.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 33/145 (22%), Positives = 64/145 (44%)
Query: 425 LWVAFAKLYETYK--DIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGAL 481
LW+ +A LYE + D R I+ ++ + +K + +W +A+ E+R K + A
Sbjct: 370 LWINYA-LYEELEAEDAERTRQIYKTCLELIPHKQFT-FSKLWLLYAQFEIRCKELQRAR 427
Query: 482 ELMRRATAE-PSVEVRR-----RVAADGNEPVQMKLHKSLRL-------WTFYVDLEESL 528
+ + A P ++ R + E +M K L W + +LE L
Sbjct: 428 KALGLAIGMCPRDKLFRGYIDLEIQLREFERCRMLYEKFLEFGPENCVTWMKFAELENLL 487
Query: 529 GNLESTRAVYE-RILDLRIATPQII 552
G+ + RA++E + R+ P+++
Sbjct: 488 GDTDRARAIFELAVQQPRLDMPELL 512
Score = 60 (26.2 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 27/99 (27%), Positives = 43/99 (43%)
Query: 391 RVKIFEGNPTKQI-LTYTEAVRTV-DPMKAVGKPHTL-WVAFAKLYETYKDIANARVIFD 447
R K+F G +I L E R + + G + + W+ FA+L D AR IF+
Sbjct: 439 RDKLFRGYIDLEIQLREFERCRMLYEKFLEFGPENCVTWMKFAELENLLGDTDRARAIFE 498
Query: 448 KAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRR 486
AVQ +D +W + + E+ + A +L R
Sbjct: 499 LAVQ--QPRLDMPELLWKAYIDFEVALGETELARQLYER 535
Score = 60 (26.2 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 34/145 (23%), Positives = 63/145 (43%)
Query: 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWA--EMELRHKNFKG 479
P LW A+ + AR ++++ ++ +T H+ +W +A EM L H + G
Sbjct: 509 PELLWKAYIDFEVALGETELARQLYERLLE---RT-QHV-KVWMSFAKFEMGLSHGD-SG 562
Query: 480 ALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLR--LWTFYVDLEESLGNLESTRAV 537
AE +V++ RR+ NE ++ K R L + D E + + + V
Sbjct: 563 P-------DAELNVQLARRIYERANEMLRQLGDKESRVLLLEAWRDFERDASDSQEMQKV 615
Query: 538 YERILDLRIATPQIIINYALLLEVW 562
++ + RI Q I++ + E W
Sbjct: 616 MDK-MPRRIKKRQKIVSDNGVEEGW 639
Score = 57 (25.1 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLL 565
+L+ Y+DLE L E R +YE+ L+ P+ + + E+ LL
Sbjct: 441 KLFRGYIDLEIQLREFERCRMLYEKFLEFG---PENCVTWMKFAELENLL 487
>TAIR|locus:2089999 [details] [associations]
symbol:AT3G13210 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
GO:GO:0005634 EMBL:CP002686 GO:GO:0006397 Gene3D:1.25.40.10
IPI:IPI00519685 RefSeq:NP_187927.1 UniGene:At.53288
ProteinModelPortal:F4JC74 SMR:F4JC74 EnsemblPlants:AT3G13210.1
GeneID:820511 KEGG:ath:AT3G13210 OMA:NEARNVW Uniprot:F4JC74
Length = 657
Score = 97 (39.2 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 34/160 (21%), Positives = 71/160 (44%)
Query: 22 RNPFSLKLWWRYLVAKREAPFKKRF-VIYERALKALPG----SYKLWHAYLIERLSIVKN 76
+NP + W+ ++ + K R IYERA+ +P + W Y+ ++
Sbjct: 291 KNPLNYDSWFDFVRLEETVGNKDRIREIYERAVANVPPPEAQEKRYWQRYIYLWINYAFF 350
Query: 77 LPITHPEYETLNNTFERALVTM-HK---MPRIWIMYLETLTSQKFITKARRTFDRALCAL 132
+ + E+ + + L + H +IW++ + Q +T AR+ A+
Sbjct: 351 AEMVTEDVESTRDVYRACLKLIPHSKFSFAKIWLLAAQHEIRQLNLTGARQILGNAIGKA 410
Query: 133 PVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSH 172
P D+I++ Y+ +E + I+ ++Y RYL++ P +
Sbjct: 411 P---KDKIFKKYIE-IELQLRNIDRCRKLYERYLEWSPGN 446
Score = 90 (36.7 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 517 LWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556
LW Y+D E S G LE TRA+YER+LD R ++ +++A
Sbjct: 485 LWKTYIDFEISEGELERTRALYERLLD-RTKHCKVWVDFA 523
Score = 82 (33.9 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 103 RIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVY 162
++W+ Y + K + +AR +DRA+ LP + D++W ++ E+ G I + ++
Sbjct: 92 QVWVKYADFEMKNKSVNEARNVWDRAVSLLP--RVDQLWYKFIHMEEKLG-NIAGARQIL 148
Query: 163 RRYLKYDPSHIE--DFIEFLVK 182
R++ P FI+F +K
Sbjct: 149 ERWIHCSPDQQAWLCFIKFELK 170
Score = 82 (33.9 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 33/139 (23%), Positives = 61/139 (43%)
Query: 353 KDVDLRLARLEHLMNRRP---ELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEA 409
KD +L+L R+ + N+ P ++ +LR+ E R + + ++ Y
Sbjct: 17 KDAELKLPRMTQVKNKTPAPIQITAEQILREARERQEAEFRPPNQTITD-SAELSDYRLR 75
Query: 410 VRTV--DPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEW 467
R D ++ +WV +A K + AR ++D+AV + VD L W ++
Sbjct: 76 RRKEFEDQIRRARLNTQVWVKYADFEMKNKSVNEARNVWDRAVSL-LPRVDQL---WYKF 131
Query: 468 AEMELRHKNFKGALELMRR 486
ME + N GA +++ R
Sbjct: 132 IHMEEKLGNIAGARQILER 150
Score = 81 (33.6 bits), Expect = 0.00079, Sum P(3) = 0.00079
Identities = 30/129 (23%), Positives = 59/129 (45%)
Query: 425 LWVAFAKLYETY-KDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
LW+ +A E +D+ + R ++ +++ + A IW A+ E+R N GA ++
Sbjct: 343 LWINYAFFAEMVTEDVESTRDVYRACLKLIPHSKFSFAKIWLLAAQHEIRQLNLTGARQI 402
Query: 484 MRRATAE-PSVEV-RRRVAAD---GNEPVQMKLHK--------SLRLWTFYVDLEESLGN 530
+ A + P ++ ++ + + N KL++ + W Y + E SL
Sbjct: 403 LGNAIGKAPKDKIFKKYIEIELQLRNIDRCRKLYERYLEWSPGNCYAWRKYAEFEMSLAE 462
Query: 531 LESTRAVYE 539
E TRA++E
Sbjct: 463 TERTRAIFE 471
Score = 70 (29.7 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMR 485
W+ F K Y +I AR I+++ V + K S + +A+ E++H + A+++
Sbjct: 161 WLCFIKFELKYNEIECARSIYERFVLCHPKV-----SAYIRYAKFEMKHGQVELAMKVFE 215
Query: 486 RATAE 490
RA E
Sbjct: 216 RAKKE 220
Score = 46 (21.3 bits), Expect = 9.2e-05, Sum P(3) = 9.2e-05
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 256 ADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297
A + ++ E A +FE + + ++F ++++FEE
Sbjct: 198 AKFEMKHGQVELAMKVFERAKKELADDEEAEILFVAFAEFEE 239
Score = 38 (18.4 bits), Expect = 0.00056, Sum P(3) = 0.00056
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 425 LWVAFAKLYETYK 437
L+VAFA+ E YK
Sbjct: 230 LFVAFAEFEEQYK 242
>TAIR|locus:2080853 [details] [associations]
symbol:AT3G51110 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002686
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 IPI:IPI00546615
RefSeq:NP_566944.1 UniGene:At.857 ProteinModelPortal:F4J390
SMR:F4J390 EnsemblPlants:AT3G51110.1 GeneID:824275
KEGG:ath:AT3G51110 OMA:ERSHTIF Uniprot:F4J390
Length = 413
Score = 101 (40.6 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 29/115 (25%), Positives = 58/115 (50%)
Query: 83 EYETLNNTFERALVT-MHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIW 141
+++ + +ERAL ++ +W+ Y E K + AR +DRA+ LP + D+ W
Sbjct: 86 DHDRARSVWERALEDESYRNHTLWLKYAEFEMRNKSVNHARNVWDRAVKILP--RVDQFW 143
Query: 142 EIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASV 196
Y+ E G I+ + +++ R++ + P + ++ F +K +L ER S+
Sbjct: 144 YKYIHMEEILG-NIDGARKIFERWMDWSPDQ-QAWLCF-IKFELRYNEIERSRSI 195
Score = 87 (35.7 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 31/133 (23%), Positives = 64/133 (48%)
Query: 411 RTVDPMKAVGKP-HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAE 469
R ++ +K V + ++VAFA+ E K++ AR ++ A+ ++ ++ ++
Sbjct: 231 RAIEMLKDVEEEAEMIFVAFAEFEELCKEVERARFLYKYAL--DHIPKGRAEDLYKKFVA 288
Query: 470 MELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLG 529
E ++ N +G + ++ RR++ +G + S W Y+ LEE+LG
Sbjct: 289 FEKQYGNKEGI---------DDAIVGRRKLQYEGEVRKNPLNYDS---WFDYISLEETLG 336
Query: 530 NLESTRAVYERIL 542
+ + R VYER +
Sbjct: 337 DKDRIREVYERAI 349
Score = 60 (26.2 bits), Expect = 4.1e-05, Sum P(3) = 4.1e-05
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 494 EVRRRVAADGNEPV-QMKLH--KSLRLWTFYVDLEESLG-NLESTRAVYERILDLRIATP 549
EV R A N P+ + K + + + LW Y EE L ++E TRAVY L+L I +
Sbjct: 343 EVYERAIA--NVPLAEEKRYWQRYIYLWIDYALFEEILAEDVERTRAVYRECLNL-IPSL 399
Query: 550 QII 552
QI+
Sbjct: 400 QIL 402
Score = 54 (24.1 bits), Expect = 0.00062, Sum P(3) = 0.00062
Identities = 20/96 (20%), Positives = 44/96 (45%)
Query: 378 LRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPM---KAVGKPHT-LWVAFAK 431
+R+NP N + W + + E G+ + Y A+ V P+ K + + LW+ +A
Sbjct: 315 VRKNPLNYDSWFDYISLEETLGDKDRIREVYERAIANV-PLAEEKRYWQRYIYLWIDYAL 373
Query: 432 LYETY-KDIANARVIFDKAVQVNYKTVDHLASIWCE 466
E +D+ R ++ + + + + L ++C+
Sbjct: 374 FEEILAEDVERTRAVYRECLNL----IPSLQILFCQ 405
Score = 52 (23.4 bits), Expect = 4.1e-05, Sum P(3) = 4.1e-05
Identities = 16/63 (25%), Positives = 34/63 (53%)
Query: 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLAS-IWCEWAEMELRHKNFKGALELM 484
++ +AK ++ AR+++++A+++ K V+ A I+ +AE E K + A L
Sbjct: 209 FIRYAKFEMKNSQVSLARIVYERAIEM-LKDVEEEAEMIFVAFAEFEELCKEVERARFLY 267
Query: 485 RRA 487
+ A
Sbjct: 268 KYA 270
Score = 46 (21.3 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 11/52 (21%), Positives = 28/52 (53%)
Query: 256 ADYYIRRELFEKARDIFEEGMMTVVTVRDFS-VIFDSYSQFEEIMVSAKMAK 306
A + ++ AR ++E + + V + + +IF ++++FEE+ + A+
Sbjct: 213 AKFEMKNSQVSLARIVYERAIEMLKDVEEEAEMIFVAFAEFEELCKEVERAR 264
>RGD|1308702 [details] [associations]
symbol:Prpf39 "PRP39 pre-mRNA processing factor 39 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 RGD:1308702
GO:GO:0005634 GO:GO:0006396 Gene3D:1.25.40.10 CTD:55015
GeneTree:ENSGT00390000005033 KO:K13217 OrthoDB:EOG49GKG9
IPI:IPI00948194 RefSeq:XP_003750219.1 RefSeq:XP_003754228.1
UniGene:Rn.12521 Ensembl:ENSRNOT00000066702 GeneID:314171
KEGG:rno:314171 UCSC:RGD:1308702 ArrayExpress:D4A5S9 Uniprot:D4A5S9
Length = 664
Score = 110 (43.8 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 37/136 (27%), Positives = 61/136 (44%)
Query: 24 PFSLKLWWRYL-VAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHP 82
P+ W +Y + KR K+ +Y R L+A+P S LW Y I L + L P
Sbjct: 123 PYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHY-INFLK--ETLDPGDP 179
Query: 83 EYE-TLNNTFERALV---TMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHD 138
E T+ TFE A++ T + ++W MY+ Q + + +DR L +P +
Sbjct: 180 ETNSTIRGTFEHAVLAAGTDFRSDKLWEMYINWENEQGNLREVTAVYDRIL-GIPTQLYS 238
Query: 139 RIWEIYLRFVEQEGIP 154
++ + V Q +P
Sbjct: 239 HHFQRFKEHV-QNNLP 253
Score = 60 (26.2 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 28/103 (27%), Positives = 43/103 (41%)
Query: 386 EQWHRRVKIFEGNPTKQILTYTEAVRTVD-PMKAVGKPHTLWVAFAKLYETYKDIANARV 444
E W + K E + + + TV P K + H LW AF E +I AR+
Sbjct: 385 EFWIKYAKYMENHSIEGVRHVFSRACTVHLPKKPMA--HMLWAAFE---EQQGNINEARI 439
Query: 445 IFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRA 487
I ++ + V LA + +E RH N + A L++ A
Sbjct: 440 I----LRTFEECVLGLAMVRLRRVSLERRHGNMEEAEHLLQDA 478
>UNIPROTKB|A7MB10 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 GO:GO:0005730 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364 InterPro:IPR022967
SMART:SM00316 EMBL:BC151277 IPI:IPI00867038 RefSeq:NP_001095573.1
UniGene:Bt.23141 ProteinModelPortal:A7MB10 SMR:A7MB10 PRIDE:A7MB10
GeneID:526867 KEGG:bta:526867 CTD:22984 eggNOG:COG0539
HOGENOM:HOG000088607 HOVERGEN:HBG108419 KO:K14792 NextBio:20874464
Uniprot:A7MB10
Length = 1874
Score = 111 (44.1 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 53/209 (25%), Positives = 98/209 (46%)
Query: 23 NPFSLKLWWRYLVAKREAP-FKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITH 81
+P S LW +Y+ +A +K + ERALK + S++ L ++++ NL +
Sbjct: 1618 SPSSSLLWLQYMAFHLQATEIEKARAVAERALKTI--SFREEQEKLNVWVALL-NLENMY 1674
Query: 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLT-SQKFITKARRTFDRALCALPVTQHDRI 140
E+L FERA V ++ ++++ + T S+KF +A ++R L Q +
Sbjct: 1675 GSQESLTKVFERA-VQYNEPLKVFLHLADIYTKSEKF-QEAGELYNRMLKRF--RQEKAV 1730
Query: 141 WEIYLRFVEQEGIPIETSLRVYRRYLKYDPS--HIEDFIEFLVKSKLWQEAAERLASVLN 198
W Y F+ + G E S RV +R L+ P H++ +F + + AER ++
Sbjct: 1731 WVKYGAFLLRRG-KAEASHRVMQRALECLPKKEHVDVIAKF-AQLEFQLGDAERARAIF- 1787
Query: 199 DDQFYSIKGKTKHRLWLELCDLLTTHATE 227
+ SI K + +W D++ H ++
Sbjct: 1788 -ESTLSIYPK-RTDVWSVYIDMIIKHGSQ 1814
Score = 66 (28.3 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA 547
K +W+ Y+D+ G+ + RA++ER++ L +A
Sbjct: 1796 KRTDVWSVYIDMIIKHGSQKEARAIFERVIHLSLA 1830
>UNIPROTKB|G5E5C4 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
taurus" [GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 GO:GO:0005829 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
UniGene:Bt.23141 OMA:LHLADIY GeneTree:ENSGT00390000012228
EMBL:DAAA02059036 EMBL:DAAA02059037 Ensembl:ENSBTAT00000012818
Uniprot:G5E5C4
Length = 1874
Score = 111 (44.1 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 53/209 (25%), Positives = 98/209 (46%)
Query: 23 NPFSLKLWWRYLVAKREAP-FKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITH 81
+P S LW +Y+ +A +K + ERALK + S++ L ++++ NL +
Sbjct: 1618 SPSSSLLWLQYMAFHLQATEIEKARAVAERALKTI--SFREEQEKLNVWVALL-NLENMY 1674
Query: 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLT-SQKFITKARRTFDRALCALPVTQHDRI 140
E+L FERA V ++ ++++ + T S+KF +A ++R L Q +
Sbjct: 1675 GSQESLTKVFERA-VQYNEPLKVFLHLADIYTKSEKF-QEAGELYNRMLKRF--RQEKAV 1730
Query: 141 WEIYLRFVEQEGIPIETSLRVYRRYLKYDPS--HIEDFIEFLVKSKLWQEAAERLASVLN 198
W Y F+ + G E S RV +R L+ P H++ +F + + AER ++
Sbjct: 1731 WVKYGAFLLRRG-KAEASHRVMQRALECLPKKEHVDVIAKF-AQLEFQLGDAERARAIF- 1787
Query: 199 DDQFYSIKGKTKHRLWLELCDLLTTHATE 227
+ SI K + +W D++ H ++
Sbjct: 1788 -ESTLSIYPK-RTDVWSVYIDMIIKHGSQ 1814
Score = 66 (28.3 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA 547
K +W+ Y+D+ G+ + RA++ER++ L +A
Sbjct: 1796 KRTDVWSVYIDMIIKHGSQKEARAIFERVIHLSLA 1830
>ZFIN|ZDB-GENE-030616-420 [details] [associations]
symbol:prpf39 "PRP39 pre-mRNA processing factor 39
homolog (yeast)" species:7955 "Danio rerio" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386
ZFIN:ZDB-GENE-030616-420 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
Gene3D:1.25.40.10 eggNOG:COG5107 EMBL:AL591492 EMBL:BC116540
IPI:IPI00481955 RefSeq:NP_001004520.1 UniGene:Dr.340
ProteinModelPortal:Q1JPZ7 STRING:Q1JPZ7 PRIDE:Q1JPZ7
Ensembl:ENSDART00000061672 GeneID:368864 KEGG:dre:368864 CTD:55015
GeneTree:ENSGT00390000005033 HOGENOM:HOG000010277
HOVERGEN:HBG082194 InParanoid:Q1JPZ7 KO:K13217 OMA:GWVYLLQ
OrthoDB:EOG49GKG9 NextBio:20813235 ArrayExpress:Q1JPZ7 Bgee:Q1JPZ7
Uniprot:Q1JPZ7
Length = 752
Score = 94 (38.1 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 30/118 (25%), Positives = 55/118 (46%)
Query: 24 PFSLKLWWRYL-VAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHP 82
P+ W +Y + ++ + +Y R L+A+P S LW Y+ + +N +
Sbjct: 197 PYCYGYWKKYADIERKHGYIQMADEVYRRGLQAIPLSVDLWLHYIT---FLRENQDTSDG 253
Query: 83 EYET-LNNTFERALV---TMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQ 136
E E+ + ++E A++ T + R+W Y+ T Q + +DR LC +P TQ
Sbjct: 254 EAESRIRASYEHAVLACGTDFRSDRLWEAYIAWETEQGKLANVTAIYDRLLC-IP-TQ 309
Score = 75 (31.5 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 33/103 (32%), Positives = 44/103 (42%)
Query: 386 EQWHRRVKIFEGNPTKQIL-TYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARV 444
E W + K E T+ + Y +A P K H LW AF E I AR
Sbjct: 463 EFWIKYAKYLESYSTEAVRHIYKKACTVHLPKKP--NVHLLWAAFE---EQQGSIDEARS 517
Query: 445 IFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRA 487
I KAV+V+ V LA + +E RH N + A L++ A
Sbjct: 518 IL-KAVEVS---VPGLAMVRLRRVSLERRHGNMEEAEALLQDA 556
>GENEDB_PFALCIPARUM|PFD0180c [details] [associations]
symbol:PFD0180c "CGI-201 protein, short form"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 PROSITE:PS50293 SMART:SM00386 GO:GO:0003723
GO:GO:0005622 Gene3D:1.25.40.10 EMBL:AL844503 GO:GO:0000245
KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI RefSeq:XP_001351349.1
ProteinModelPortal:Q8I1Z2 EnsemblProtists:PFD0180c:mRNA
GeneID:812468 KEGG:pfa:PFD0180c EuPathDB:PlasmoDB:PF3D7_0403700
ProtClustDB:CLSZ2429136 Uniprot:Q8I1Z2
Length = 780
Score = 95 (38.5 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 37/141 (26%), Positives = 61/141 (43%)
Query: 79 ITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHD 138
I + E + FERAL + +W+ Y+E K I AR +R + LP+ +
Sbjct: 82 IKQKDIERCRSIFERALNIDYTNKNLWLKYIEVELINKNINSARNLLERVVLLLPL--EN 139
Query: 139 RIWEIYLRFVEQEGIPIETSLRVYRRYLKY--DPSHIEDFIEFLVKSK---LWQEAAERL 193
W+ Y E + +Y R++K+ D S +I F + +E ERL
Sbjct: 140 IFWKKYAHLEEILNNYVNAR-NIYERWIKFKIDESSFLCYIYFEERCNEINKCREIFERL 198
Query: 194 -ASVLNDDQFYS-IKGKTKHR 212
S+ + FY IK + K++
Sbjct: 199 IVSIPKLECFYKFIKFEKKYK 219
Score = 73 (30.8 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 25/108 (23%), Positives = 53/108 (49%)
Query: 439 IANARVIFDKAVQVNYK--TVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVR 496
I N + IF+K + K + +++ ++ +E N K + ++ + VE
Sbjct: 439 IPNEK-IFEKFCEFELKLGNIRECRNVYAKY--VEAFPFNSKAWISMINFELSLDEVERA 495
Query: 497 RRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL 544
R++A MKL + + W Y+D+E +L ++ R +Y+R+L++
Sbjct: 496 RQIAEIAINLDDMKLPELI--WKNYIDMEINLQEYDNARKLYDRLLNI 541
>UNIPROTKB|Q8I1Z2 [details] [associations]
symbol:PFD0180c "CGI-201 protein, short form" species:36329
"Plasmodium falciparum 3D7" [GO:0000245 "spliceosomal complex
assembly" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
PROSITE:PS50293 SMART:SM00386 GO:GO:0003723 GO:GO:0005622
Gene3D:1.25.40.10 EMBL:AL844503 GO:GO:0000245 KO:K12869
HOGENOM:HOG000207972 OMA:KFTFAKI RefSeq:XP_001351349.1
ProteinModelPortal:Q8I1Z2 EnsemblProtists:PFD0180c:mRNA
GeneID:812468 KEGG:pfa:PFD0180c EuPathDB:PlasmoDB:PF3D7_0403700
ProtClustDB:CLSZ2429136 Uniprot:Q8I1Z2
Length = 780
Score = 95 (38.5 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 37/141 (26%), Positives = 61/141 (43%)
Query: 79 ITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHD 138
I + E + FERAL + +W+ Y+E K I AR +R + LP+ +
Sbjct: 82 IKQKDIERCRSIFERALNIDYTNKNLWLKYIEVELINKNINSARNLLERVVLLLPL--EN 139
Query: 139 RIWEIYLRFVEQEGIPIETSLRVYRRYLKY--DPSHIEDFIEFLVKSK---LWQEAAERL 193
W+ Y E + +Y R++K+ D S +I F + +E ERL
Sbjct: 140 IFWKKYAHLEEILNNYVNAR-NIYERWIKFKIDESSFLCYIYFEERCNEINKCREIFERL 198
Query: 194 -ASVLNDDQFYS-IKGKTKHR 212
S+ + FY IK + K++
Sbjct: 199 IVSIPKLECFYKFIKFEKKYK 219
Score = 73 (30.8 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 25/108 (23%), Positives = 53/108 (49%)
Query: 439 IANARVIFDKAVQVNYK--TVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVR 496
I N + IF+K + K + +++ ++ +E N K + ++ + VE
Sbjct: 439 IPNEK-IFEKFCEFELKLGNIRECRNVYAKY--VEAFPFNSKAWISMINFELSLDEVERA 495
Query: 497 RRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL 544
R++A MKL + + W Y+D+E +L ++ R +Y+R+L++
Sbjct: 496 RQIAEIAINLDDMKLPELI--WKNYIDMEINLQEYDNARKLYDRLLNI 541
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.325 0.138 0.423 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 594 562 0.0010 119 3 11 22 0.45 33
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 47
No. of states in DFA: 620 (66 KB)
Total size of DFA: 343 KB (2170 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 48.83u 0.09s 48.92t Elapsed: 00:00:02
Total cpu time: 48.86u 0.09s 48.95t Elapsed: 00:00:02
Start: Fri May 10 05:24:36 2013 End: Fri May 10 05:24:38 2013