Query 007648
Match_columns 594
No_of_seqs 183 out of 1942
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 13:28:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007648.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007648hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2047 mRNA splicing factor [ 100.0 6.3E-66 1.4E-70 510.1 53.0 533 2-573 2-535 (835)
2 KOG1915 Cell cycle control pro 100.0 1.3E-47 2.9E-52 367.9 40.4 425 12-569 58-491 (677)
3 KOG1915 Cell cycle control pro 100.0 2.5E-37 5.4E-42 297.4 41.8 464 10-587 90-611 (677)
4 KOG0495 HAT repeat protein [RN 100.0 9.5E-36 2E-40 296.4 47.1 484 15-581 337-890 (913)
5 KOG0495 HAT repeat protein [RN 100.0 9.6E-35 2.1E-39 289.3 44.2 477 13-580 271-791 (913)
6 KOG4626 O-linked N-acetylgluco 100.0 5.1E-32 1.1E-36 268.4 29.0 393 17-563 106-504 (966)
7 KOG4626 O-linked N-acetylgluco 100.0 6.5E-30 1.4E-34 253.5 32.4 414 38-572 60-479 (966)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.4E-28 7.3E-33 279.8 52.0 470 10-572 414-894 (899)
9 TIGR02917 PEP_TPR_lipo putativ 100.0 1.8E-27 3.9E-32 273.7 51.9 466 10-572 380-860 (899)
10 KOG2047 mRNA splicing factor [ 100.0 1E-26 2.3E-31 232.0 44.3 495 13-564 46-709 (835)
11 PRK11447 cellulose synthase su 100.0 4.7E-25 1E-29 256.7 51.4 501 12-574 47-662 (1157)
12 PRK11447 cellulose synthase su 100.0 3.3E-25 7.1E-30 258.0 49.8 477 11-573 165-735 (1157)
13 TIGR00990 3a0801s09 mitochondr 100.0 1.2E-24 2.6E-29 238.2 45.8 418 38-573 139-566 (615)
14 KOG1914 mRNA cleavage and poly 99.9 1.3E-23 2.8E-28 206.6 41.1 427 17-546 10-503 (656)
15 PRK15174 Vi polysaccharide exp 99.9 1.5E-23 3.3E-28 229.0 42.9 336 29-493 44-384 (656)
16 PRK10049 pgaA outer membrane p 99.9 7.7E-23 1.7E-27 228.0 44.7 416 22-569 10-447 (765)
17 TIGR00990 3a0801s09 mitochondr 99.9 1.7E-21 3.7E-26 213.4 45.7 448 12-579 146-605 (615)
18 PRK10049 pgaA outer membrane p 99.9 4.8E-22 1E-26 221.7 41.9 398 14-553 36-465 (765)
19 PRK15174 Vi polysaccharide exp 99.9 1E-21 2.2E-26 214.7 37.7 346 79-575 53-407 (656)
20 PRK09782 bacteriophage N4 rece 99.9 1.2E-20 2.7E-25 210.7 46.5 261 239-573 466-735 (987)
21 PRK09782 bacteriophage N4 rece 99.9 1.8E-19 4E-24 201.3 49.5 508 11-573 62-701 (987)
22 KOG2002 TPR-containing nuclear 99.9 4.5E-19 9.8E-24 186.0 37.9 501 13-570 184-737 (1018)
23 KOG2002 TPR-containing nuclear 99.9 5.5E-19 1.2E-23 185.3 38.5 422 42-566 146-581 (1018)
24 COG5107 RNA14 Pre-mRNA 3'-end 99.9 1.4E-18 3E-23 167.6 35.0 460 11-551 26-538 (660)
25 KOG1914 mRNA cleavage and poly 99.9 2.3E-18 4.9E-23 169.9 33.8 420 50-569 10-492 (656)
26 PRK14574 hmsH outer membrane p 99.9 1E-16 2.2E-21 175.9 49.5 440 23-568 30-503 (822)
27 KOG0547 Translocase of outer m 99.8 8.8E-18 1.9E-22 163.9 33.3 405 39-571 128-559 (606)
28 KOG1258 mRNA processing protei 99.8 3.9E-17 8.4E-22 164.9 37.1 418 19-563 37-489 (577)
29 PRK11788 tetratricopeptide rep 99.8 1.4E-17 2.9E-22 173.1 30.3 132 397-558 194-325 (389)
30 PRK14574 hmsH outer membrane p 99.8 8.3E-16 1.8E-20 168.9 44.9 438 11-552 52-521 (822)
31 KOG1155 Anaphase-promoting com 99.8 4E-16 8.6E-21 151.6 35.1 163 377-569 356-527 (559)
32 PRK11788 tetratricopeptide rep 99.8 3.1E-16 6.7E-21 162.9 35.7 290 80-543 47-346 (389)
33 KOG2396 HAT (Half-A-TPR) repea 99.8 2E-14 4.2E-19 141.5 43.3 128 13-150 37-186 (568)
34 PLN03081 pentatricopeptide (PP 99.8 3E-15 6.4E-20 166.7 43.0 445 28-571 88-550 (697)
35 KOG1155 Anaphase-promoting com 99.8 4.1E-16 8.8E-21 151.6 31.0 323 100-574 162-491 (559)
36 PF13429 TPR_15: Tetratricopep 99.8 1.1E-18 2.4E-23 172.2 12.9 129 422-574 145-273 (280)
37 KOG1258 mRNA processing protei 99.8 5.2E-15 1.1E-19 149.6 37.9 378 13-475 65-489 (577)
38 PLN03077 Protein ECB2; Provisi 99.8 9.1E-15 2E-19 166.8 42.1 444 26-570 252-712 (857)
39 KOG1126 DNA-binding cell divis 99.8 5.7E-16 1.2E-20 157.5 28.2 212 242-553 415-629 (638)
40 KOG2076 RNA polymerase III tra 99.8 5.7E-15 1.2E-19 154.6 35.1 346 81-573 152-507 (895)
41 PF13429 TPR_15: Tetratricopep 99.7 1.6E-17 3.5E-22 163.9 13.3 255 79-490 19-277 (280)
42 PLN03218 maturation of RBCL 1; 99.7 1.4E-13 3E-18 155.6 46.3 423 24-570 367-808 (1060)
43 KOG1070 rRNA processing protei 99.7 6.4E-16 1.4E-20 167.1 26.1 251 86-543 1442-1699(1710)
44 KOG2076 RNA polymerase III tra 99.7 1.9E-14 4.1E-19 150.8 35.5 346 39-491 152-513 (895)
45 KOG1126 DNA-binding cell divis 99.7 3.1E-16 6.7E-21 159.4 20.1 172 377-578 413-593 (638)
46 PLN03077 Protein ECB2; Provisi 99.7 3.9E-13 8.5E-18 153.4 41.2 439 26-569 221-677 (857)
47 KOG0547 Translocase of outer m 99.7 1.7E-13 3.7E-18 134.3 31.7 163 377-569 352-523 (606)
48 PLN03218 maturation of RBCL 1; 99.7 4.1E-12 8.8E-17 143.8 47.5 416 13-549 390-821 (1060)
49 PLN03081 pentatricopeptide (PP 99.7 6E-13 1.3E-17 148.3 39.9 432 13-544 107-557 (697)
50 TIGR00540 hemY_coli hemY prote 99.7 3E-13 6.4E-18 140.6 34.8 136 382-544 260-399 (409)
51 KOG1070 rRNA processing protei 99.7 1E-14 2.2E-19 157.9 22.5 232 11-299 1442-1684(1710)
52 PRK10747 putative protoheme IX 99.7 5.4E-13 1.2E-17 137.9 34.1 133 379-545 257-391 (398)
53 TIGR00540 hemY_coli hemY prote 99.6 1.2E-12 2.6E-17 136.0 36.0 293 40-489 98-398 (409)
54 KOG4162 Predicted calmodulin-b 99.6 5.1E-12 1.1E-16 130.7 39.4 440 25-550 321-789 (799)
55 KOG2396 HAT (Half-A-TPR) repea 99.6 1.2E-11 2.7E-16 122.1 40.2 94 14-114 92-186 (568)
56 PRK12370 invasion protein regu 99.6 2.7E-13 5.9E-18 146.2 31.6 276 55-544 251-535 (553)
57 KOG4162 Predicted calmodulin-b 99.6 5.2E-12 1.1E-16 130.7 38.0 398 99-571 320-776 (799)
58 KOG1173 Anaphase-promoting com 99.6 5.3E-13 1.2E-17 133.4 28.2 164 386-572 347-512 (611)
59 KOG1173 Anaphase-promoting com 99.6 3E-12 6.4E-17 128.1 32.8 273 100-493 242-521 (611)
60 KOG2003 TPR repeat-containing 99.6 2.1E-12 4.6E-17 125.2 27.9 431 82-592 215-705 (840)
61 PRK12370 invasion protein regu 99.6 2.3E-13 4.9E-18 146.8 20.8 176 354-571 276-463 (553)
62 KOG0548 Molecular co-chaperone 99.6 4.8E-11 1E-15 119.1 35.2 412 79-561 13-472 (539)
63 KOG0128 RNA-binding protein SA 99.5 5.9E-11 1.3E-15 123.8 36.6 431 14-542 100-561 (881)
64 PRK11189 lipoprotein NlpI; Pro 99.5 1E-12 2.2E-17 130.1 23.0 181 82-282 78-269 (296)
65 PRK10747 putative protoheme IX 99.5 6.1E-11 1.3E-15 122.6 37.1 190 82-278 98-292 (398)
66 COG3063 PilF Tfp pilus assembl 99.5 3.7E-12 8.1E-17 114.0 22.8 207 249-551 35-243 (250)
67 KOG0624 dsRNA-activated protei 99.5 8E-11 1.7E-15 110.9 31.2 324 23-494 34-374 (504)
68 KOG1125 TPR repeat-containing 99.5 1.5E-12 3.2E-17 130.8 20.8 91 382-478 461-559 (579)
69 KOG0548 Molecular co-chaperone 99.5 1E-10 2.2E-15 116.9 32.6 353 39-494 15-459 (539)
70 KOG1156 N-terminal acetyltrans 99.5 7.9E-10 1.7E-14 112.7 39.5 468 25-569 6-502 (700)
71 TIGR02521 type_IV_pilW type IV 99.5 8.7E-12 1.9E-16 118.9 24.5 35 249-283 31-65 (234)
72 KOG1174 Anaphase-promoting com 99.5 2.9E-10 6.2E-15 109.7 33.6 151 378-559 361-515 (564)
73 TIGR02521 type_IV_pilW type IV 99.5 1.3E-11 2.9E-16 117.7 25.1 200 25-278 29-232 (234)
74 KOG1127 TPR repeat-containing 99.5 1.3E-10 2.7E-15 123.2 33.6 449 12-577 477-951 (1238)
75 PRK11189 lipoprotein NlpI; Pro 99.5 2.8E-11 6.1E-16 119.8 27.8 90 81-173 39-132 (296)
76 COG5107 RNA14 Pre-mRNA 3'-end 99.5 3.6E-11 7.8E-16 117.0 27.1 433 48-589 30-548 (660)
77 KOG1174 Anaphase-promoting com 99.5 1E-10 2.2E-15 112.7 29.9 347 13-494 150-504 (564)
78 COG3063 PilF Tfp pilus assembl 99.5 1.7E-12 3.6E-17 116.2 16.4 153 392-572 44-196 (250)
79 KOG1156 N-terminal acetyltrans 99.5 2.2E-09 4.7E-14 109.5 40.1 414 13-491 27-469 (700)
80 KOG0624 dsRNA-activated protei 99.5 1.7E-10 3.8E-15 108.7 29.0 102 435-556 281-382 (504)
81 PRK15359 type III secretion sy 99.5 3.1E-12 6.7E-17 112.0 15.8 128 403-563 13-140 (144)
82 KOG1125 TPR repeat-containing 99.4 2.1E-11 4.6E-16 122.6 23.4 140 378-537 421-564 (579)
83 PF05843 Suf: Suppressor of fo 99.4 1.4E-12 3.1E-17 127.5 13.6 138 28-173 2-141 (280)
84 KOG2003 TPR repeat-containing 99.4 3.9E-09 8.4E-14 103.0 33.1 406 40-560 251-705 (840)
85 COG2956 Predicted N-acetylgluc 99.4 1.7E-09 3.7E-14 101.5 29.5 86 398-492 195-280 (389)
86 COG2956 Predicted N-acetylgluc 99.4 4.1E-10 9E-15 105.6 24.5 195 152-493 49-246 (389)
87 PF05843 Suf: Suppressor of fo 99.4 1.6E-11 3.5E-16 120.1 15.3 140 387-553 3-145 (280)
88 KOG1129 TPR repeat-containing 99.3 6E-11 1.3E-15 111.0 15.8 224 233-555 242-469 (478)
89 TIGR03302 OM_YfiO outer membra 99.3 6.5E-11 1.4E-15 113.7 16.6 182 381-575 29-229 (235)
90 KOG1127 TPR repeat-containing 99.3 3.4E-09 7.3E-14 112.6 30.0 462 12-572 511-1030(1238)
91 PRK10370 formate-dependent nit 99.3 6.4E-11 1.4E-15 109.4 14.7 123 397-549 53-178 (198)
92 PLN02789 farnesyltranstransfer 99.3 8.2E-10 1.8E-14 109.3 23.3 216 249-561 37-267 (320)
93 KOG1129 TPR repeat-containing 99.2 1.3E-10 2.8E-15 108.9 14.1 221 253-569 227-449 (478)
94 KOG2376 Signal recognition par 99.2 2E-06 4.3E-11 87.5 42.8 131 28-173 14-144 (652)
95 PRK10370 formate-dependent nit 99.2 1.5E-10 3.3E-15 106.9 12.8 115 436-574 52-169 (198)
96 cd05804 StaR_like StaR_like; a 99.2 3.7E-08 8E-13 100.9 31.0 53 519-571 268-329 (355)
97 PLN02789 farnesyltranstransfer 99.2 9.6E-10 2.1E-14 108.8 17.7 155 377-561 63-229 (320)
98 cd05804 StaR_like StaR_like; a 99.2 7.8E-08 1.7E-12 98.5 32.6 205 23-280 2-217 (355)
99 PRK15179 Vi polysaccharide bio 99.1 1.9E-09 4.2E-14 116.9 19.4 148 378-555 79-228 (694)
100 PRK15359 type III secretion sy 99.1 9.1E-10 2E-14 96.4 13.9 89 39-135 37-125 (144)
101 TIGR02552 LcrH_SycD type III s 99.1 1.2E-09 2.6E-14 94.9 14.5 120 404-553 4-123 (135)
102 TIGR03302 OM_YfiO outer membra 99.1 7.4E-09 1.6E-13 99.4 20.6 192 22-280 28-234 (235)
103 KOG0128 RNA-binding protein SA 99.1 1.7E-07 3.7E-12 98.5 31.3 143 14-168 66-219 (881)
104 KOG1840 Kinesin light chain [C 99.1 3.7E-08 8.1E-13 102.0 25.9 258 98-490 195-479 (508)
105 COG5010 TadD Flp pilus assembl 99.1 6.1E-09 1.3E-13 95.7 17.1 163 378-571 60-224 (257)
106 KOG1840 Kinesin light chain [C 99.1 1.7E-08 3.7E-13 104.5 22.5 256 143-543 204-478 (508)
107 PRK15179 Vi polysaccharide bio 99.1 2.2E-09 4.8E-14 116.5 16.5 128 422-573 85-212 (694)
108 PRK14720 transcript cleavage f 99.0 9.7E-08 2.1E-12 104.7 27.1 261 97-578 26-290 (906)
109 COG3071 HemY Uncharacterized e 99.0 2.2E-06 4.7E-11 83.5 32.4 114 397-544 277-390 (400)
110 KOG0553 TPR repeat-containing 99.0 3.5E-09 7.6E-14 99.1 12.7 113 430-566 88-200 (304)
111 PRK14720 transcript cleavage f 99.0 5.8E-08 1.3E-12 106.4 23.8 255 55-490 26-283 (906)
112 PF12569 NARP1: NMDA receptor- 99.0 9.8E-07 2.1E-11 92.7 31.6 140 382-544 189-334 (517)
113 COG4783 Putative Zn-dependent 99.0 7.7E-09 1.7E-13 102.8 14.3 124 422-569 305-428 (484)
114 TIGR02552 LcrH_SycD type III s 99.0 9E-09 1.9E-13 89.4 13.0 117 47-174 4-120 (135)
115 KOG3060 Uncharacterized conser 99.0 2.8E-07 6E-12 84.2 21.8 191 39-282 25-224 (289)
116 KOG0550 Molecular chaperone (D 99.0 1.8E-07 3.9E-12 90.9 21.8 116 424-559 250-367 (486)
117 PF08424 NRDE-2: NRDE-2, neces 99.0 2E-08 4.3E-13 100.2 15.9 116 10-133 2-133 (321)
118 PLN03088 SGT1, suppressor of 98.9 1.5E-08 3.3E-13 102.7 14.8 112 427-562 6-117 (356)
119 PRK15363 pathogenicity island 98.9 2.6E-08 5.6E-13 85.7 13.4 99 423-545 35-133 (157)
120 PF12569 NARP1: NMDA receptor- 98.9 6.3E-07 1.4E-11 94.1 26.5 140 423-589 192-333 (517)
121 KOG1128 Uncharacterized conser 98.9 3.5E-08 7.7E-13 102.2 16.7 160 381-574 453-612 (777)
122 COG5010 TadD Flp pilus assembl 98.9 2.8E-08 6.1E-13 91.4 14.4 123 422-569 66-188 (257)
123 KOG2376 Signal recognition par 98.9 2.8E-05 6E-10 79.4 35.3 434 79-570 23-512 (652)
124 COG3071 HemY Uncharacterized e 98.9 2.6E-05 5.6E-10 76.1 33.8 286 79-451 95-389 (400)
125 KOG3060 Uncharacterized conser 98.9 1.6E-07 3.4E-12 85.7 16.5 137 397-563 66-202 (289)
126 PRK15363 pathogenicity island 98.8 2.8E-08 6E-13 85.5 10.6 91 462-572 36-126 (157)
127 TIGR02795 tol_pal_ybgF tol-pal 98.8 6.5E-08 1.4E-12 81.7 12.6 112 424-553 3-114 (119)
128 KOG0550 Molecular chaperone (D 98.8 2.2E-07 4.8E-12 90.3 17.1 269 81-493 62-353 (486)
129 KOG1128 Uncharacterized conser 98.8 3.8E-07 8.3E-12 94.8 18.7 117 397-543 499-615 (777)
130 cd00189 TPR Tetratricopeptide 98.8 9.2E-08 2E-12 76.4 11.4 99 425-547 2-100 (100)
131 COG4235 Cytochrome c biogenesi 98.8 1.7E-07 3.7E-12 88.7 14.5 114 16-134 145-259 (287)
132 COG4783 Putative Zn-dependent 98.7 6.4E-07 1.4E-11 89.4 17.7 149 24-197 303-452 (484)
133 KOG0553 TPR repeat-containing 98.7 1.5E-07 3.2E-12 88.4 11.3 90 81-173 94-183 (304)
134 PF13414 TPR_11: TPR repeat; P 98.7 4.2E-08 9.2E-13 73.9 6.1 67 422-492 2-69 (69)
135 PF13432 TPR_16: Tetratricopep 98.7 8.3E-08 1.8E-12 71.3 7.6 64 466-549 2-65 (65)
136 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 4.9E-07 1.1E-11 91.3 14.4 122 428-576 174-298 (395)
137 PRK02603 photosystem I assembl 98.6 8.8E-07 1.9E-11 80.3 14.7 107 422-549 34-154 (172)
138 PF09976 TPR_21: Tetratricopep 98.6 1.7E-06 3.6E-11 76.0 15.7 121 397-542 25-145 (145)
139 PRK10153 DNA-binding transcrip 98.6 8E-07 1.7E-11 93.9 16.0 142 378-550 330-488 (517)
140 PF13432 TPR_16: Tetratricopep 98.6 9.6E-08 2.1E-12 71.0 6.3 63 427-493 1-63 (65)
141 PF08424 NRDE-2: NRDE-2, neces 98.6 3.3E-06 7.1E-11 84.4 19.2 173 46-279 5-184 (321)
142 COG5191 Uncharacterized conser 98.6 1.4E-07 3.1E-12 88.1 7.6 128 13-150 37-188 (435)
143 PRK10153 DNA-binding transcrip 98.6 3.9E-06 8.4E-11 88.8 19.4 155 15-174 325-488 (517)
144 PF13414 TPR_11: TPR repeat; P 98.6 1.6E-07 3.4E-12 70.8 6.5 65 462-546 4-69 (69)
145 PLN03088 SGT1, suppressor of 98.6 1.4E-06 3E-11 88.5 15.1 90 38-135 14-103 (356)
146 CHL00033 ycf3 photosystem I as 98.6 1.7E-06 3.8E-11 78.1 14.2 107 422-549 34-154 (168)
147 KOG3785 Uncharacterized conser 98.5 0.00039 8.5E-09 66.8 29.6 382 36-569 32-448 (557)
148 COG5191 Uncharacterized conser 98.5 1E-07 2.2E-12 89.1 5.6 104 4-114 84-188 (435)
149 COG4235 Cytochrome c biogenesi 98.5 2.7E-06 5.9E-11 80.6 14.5 120 399-548 138-260 (287)
150 cd00189 TPR Tetratricopeptide 98.5 1.4E-06 3E-11 69.4 10.6 95 388-492 3-99 (100)
151 PRK04841 transcriptional regul 98.5 0.00037 8.1E-09 80.8 34.2 157 396-569 586-751 (903)
152 PF12895 Apc3: Anaphase-promot 98.4 5.1E-07 1.1E-11 71.0 6.5 83 436-541 2-84 (84)
153 PRK11906 transcriptional regul 98.4 8.1E-06 1.7E-10 82.2 16.3 162 377-569 240-427 (458)
154 PRK10803 tol-pal system protei 98.4 4.5E-06 9.7E-11 80.3 14.0 112 423-552 142-254 (263)
155 TIGR02795 tol_pal_ybgF tol-pal 98.4 4.3E-06 9.3E-11 70.4 11.7 104 386-493 3-108 (119)
156 PF14559 TPR_19: Tetratricopep 98.4 7E-07 1.5E-11 67.0 5.7 66 472-557 2-67 (68)
157 PF14559 TPR_19: Tetratricopep 98.4 1.3E-06 2.9E-11 65.4 7.1 63 81-145 4-66 (68)
158 PRK04841 transcriptional regul 98.4 0.0012 2.7E-08 76.5 34.8 321 80-548 421-764 (903)
159 PF12895 Apc3: Anaphase-promot 98.3 1.3E-06 2.7E-11 68.7 6.5 82 397-487 3-84 (84)
160 PRK02603 photosystem I assembl 98.3 6.1E-06 1.3E-10 74.8 11.7 109 378-493 28-152 (172)
161 PF09976 TPR_21: Tetratricopep 98.3 3.3E-05 7.2E-10 67.7 15.9 126 29-166 14-145 (145)
162 CHL00033 ycf3 photosystem I as 98.3 5.9E-06 1.3E-10 74.6 11.0 114 437-569 13-133 (168)
163 PF04733 Coatomer_E: Coatomer 98.3 1.8E-05 3.9E-10 77.5 15.2 124 422-567 130-253 (290)
164 PF13525 YfiO: Outer membrane 98.3 4.7E-05 1E-09 70.9 17.2 171 386-568 6-197 (203)
165 PRK11906 transcriptional regul 98.3 5.8E-05 1.3E-09 76.2 18.8 176 17-195 238-432 (458)
166 PRK10866 outer membrane biogen 98.3 5E-05 1.1E-09 72.6 17.7 181 384-576 31-239 (243)
167 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.4E-05 3.1E-10 80.8 14.1 112 397-541 183-294 (395)
168 PRK15331 chaperone protein Sic 98.3 1.7E-05 3.6E-10 68.8 12.4 105 424-553 38-142 (165)
169 COG4700 Uncharacterized protei 98.2 3.9E-05 8.4E-10 67.0 13.9 127 422-571 88-215 (251)
170 PF13371 TPR_9: Tetratricopept 98.2 5E-06 1.1E-10 63.3 7.5 68 469-556 3-70 (73)
171 PF13428 TPR_14: Tetratricopep 98.2 2.1E-06 4.6E-11 57.9 4.5 43 516-558 2-44 (44)
172 KOG0543 FKBP-type peptidyl-pro 98.2 2.4E-05 5.3E-10 76.9 12.5 127 397-547 222-358 (397)
173 PRK10803 tol-pal system protei 98.2 5.6E-05 1.2E-09 72.8 14.8 102 26-135 141-250 (263)
174 KOG3617 WD40 and TPR repeat-co 98.1 0.0028 6.1E-08 67.4 27.4 363 79-576 739-1172(1416)
175 PF14938 SNAP: Soluble NSF att 98.1 0.00017 3.6E-09 71.0 18.1 163 398-574 89-262 (282)
176 PF14938 SNAP: Soluble NSF att 98.1 4.3E-05 9.4E-10 75.2 13.6 158 397-569 49-216 (282)
177 PF13371 TPR_9: Tetratricopept 98.1 7E-06 1.5E-10 62.5 6.2 60 430-493 2-61 (73)
178 PF12688 TPR_5: Tetratrico pep 98.1 8.4E-05 1.8E-09 62.0 12.5 102 424-543 2-103 (120)
179 PF12688 TPR_5: Tetratrico pep 98.1 6.4E-05 1.4E-09 62.7 11.4 98 386-490 2-104 (120)
180 KOG3617 WD40 and TPR repeat-co 98.0 0.024 5.3E-07 60.7 32.0 195 39-279 741-942 (1416)
181 KOG0543 FKBP-type peptidyl-pro 98.0 6.7E-05 1.5E-09 73.9 12.6 120 428-567 213-343 (397)
182 PF13431 TPR_17: Tetratricopep 98.0 4.7E-06 1E-10 52.4 3.0 34 537-570 1-34 (34)
183 PRK15331 chaperone protein Sic 98.0 2.2E-05 4.7E-10 68.2 8.0 90 462-571 38-127 (165)
184 PF13428 TPR_14: Tetratricopep 98.0 1.2E-05 2.6E-10 54.2 5.1 42 424-469 2-43 (44)
185 PRK10866 outer membrane biogen 98.0 0.0015 3.2E-08 62.5 20.6 160 26-196 31-238 (243)
186 COG4785 NlpI Lipoprotein NlpI, 98.0 0.0014 3E-08 59.0 18.4 198 40-279 60-267 (297)
187 KOG4234 TPR repeat-containing 98.0 8.6E-05 1.9E-09 65.6 10.7 140 431-590 103-245 (271)
188 PF13525 YfiO: Outer membrane 97.9 0.0025 5.4E-08 59.3 19.4 153 102-283 5-175 (203)
189 PF04733 Coatomer_E: Coatomer 97.8 0.00084 1.8E-08 65.9 15.5 157 383-571 129-288 (290)
190 COG1729 Uncharacterized protei 97.7 0.00054 1.2E-08 64.4 12.9 102 434-553 152-253 (262)
191 PF08311 Mad3_BUB1_I: Mad3/BUB 97.7 0.00028 6.2E-09 59.7 9.5 104 12-129 4-126 (126)
192 COG1729 Uncharacterized protei 97.6 0.00067 1.5E-08 63.8 11.7 95 395-493 153-247 (262)
193 KOG3081 Vesicle coat complex C 97.6 0.0021 4.6E-08 59.8 14.7 151 384-568 106-260 (299)
194 COG3898 Uncharacterized membra 97.6 0.08 1.7E-06 52.2 28.8 126 250-452 264-392 (531)
195 PF06552 TOM20_plant: Plant sp 97.6 0.0008 1.7E-08 59.1 10.9 94 42-135 7-113 (186)
196 PF13512 TPR_18: Tetratricopep 97.6 0.0016 3.4E-08 55.4 12.2 66 28-103 12-82 (142)
197 PLN03098 LPA1 LOW PSII ACCUMUL 97.6 0.00026 5.5E-09 71.5 8.8 68 379-452 69-141 (453)
198 PLN03098 LPA1 LOW PSII ACCUMUL 97.6 0.00025 5.4E-09 71.6 8.5 68 421-492 73-143 (453)
199 PF13424 TPR_12: Tetratricopep 97.6 0.00033 7.2E-09 53.9 7.6 69 422-490 4-75 (78)
200 KOG3616 Selective LIM binding 97.6 0.16 3.4E-06 54.0 31.6 46 79-125 455-500 (1636)
201 KOG1130 Predicted G-alpha GTPa 97.6 0.012 2.7E-07 58.0 19.4 128 423-564 235-370 (639)
202 COG4700 Uncharacterized protei 97.6 0.0024 5.1E-08 56.1 13.1 149 39-197 69-220 (251)
203 COG4785 NlpI Lipoprotein NlpI, 97.5 0.0069 1.5E-07 54.7 15.5 105 377-492 91-198 (297)
204 PF06552 TOM20_plant: Plant sp 97.5 0.0005 1.1E-08 60.4 8.3 96 439-558 7-123 (186)
205 COG4105 ComL DNA uptake lipopr 97.5 0.0074 1.6E-07 56.4 16.1 172 386-571 35-226 (254)
206 PF13431 TPR_17: Tetratricopep 97.5 0.00013 2.8E-09 45.8 3.0 33 90-122 1-33 (34)
207 PF08311 Mad3_BUB1_I: Mad3/BUB 97.5 0.003 6.5E-08 53.4 12.3 113 43-166 2-126 (126)
208 KOG3785 Uncharacterized conser 97.4 0.13 2.8E-06 50.1 29.4 222 25-283 57-316 (557)
209 KOG4555 TPR repeat-containing 97.4 0.0019 4.2E-08 53.1 10.0 94 433-546 53-146 (175)
210 KOG4340 Uncharacterized conser 97.4 0.029 6.2E-07 53.2 19.0 49 236-285 32-80 (459)
211 PF13512 TPR_18: Tetratricopep 97.4 0.0046 1E-07 52.6 12.2 22 530-551 114-135 (142)
212 KOG4234 TPR repeat-containing 97.4 0.00056 1.2E-08 60.6 6.7 92 472-578 106-197 (271)
213 KOG4648 Uncharacterized conser 97.3 0.001 2.2E-08 63.8 8.9 105 430-558 104-208 (536)
214 smart00386 HAT HAT (Half-A-TPR 97.3 0.00055 1.2E-08 42.4 4.4 31 40-70 1-31 (33)
215 COG0457 NrfG FOG: TPR repeat [ 97.3 0.035 7.6E-07 51.7 19.1 163 380-569 90-256 (291)
216 COG3898 Uncharacterized membra 97.3 0.24 5.1E-06 49.0 31.5 136 377-549 255-396 (531)
217 COG4105 ComL DNA uptake lipopr 97.2 0.047 1E-06 51.2 18.5 168 100-283 32-201 (254)
218 KOG4340 Uncharacterized conser 97.2 0.01 2.2E-07 56.1 14.0 161 377-569 36-198 (459)
219 PF02184 HAT: HAT (Half-A-TPR) 97.2 0.00057 1.2E-08 41.2 3.6 29 41-70 2-30 (32)
220 PF07719 TPR_2: Tetratricopept 97.1 0.00096 2.1E-08 41.8 4.6 33 424-456 2-34 (34)
221 smart00386 HAT HAT (Half-A-TPR 97.1 0.00088 1.9E-08 41.5 4.3 32 82-113 1-32 (33)
222 PF07719 TPR_2: Tetratricopept 97.1 0.001 2.2E-08 41.6 4.4 33 516-548 2-34 (34)
223 PF13424 TPR_12: Tetratricopep 97.0 0.0013 2.7E-08 50.6 5.3 58 516-573 6-70 (78)
224 PF00515 TPR_1: Tetratricopept 97.0 0.001 2.2E-08 41.7 3.9 33 424-456 2-34 (34)
225 COG0457 NrfG FOG: TPR repeat [ 97.0 0.29 6.3E-06 45.3 24.6 187 82-281 73-268 (291)
226 PF00515 TPR_1: Tetratricopept 97.0 0.0014 3.1E-08 41.0 4.1 33 516-548 2-34 (34)
227 smart00777 Mad3_BUB1_I Mad3/BU 96.9 0.006 1.3E-07 51.0 8.8 100 13-126 5-123 (125)
228 KOG4555 TPR repeat-containing 96.9 0.011 2.4E-07 48.8 9.7 91 396-492 56-146 (175)
229 COG2976 Uncharacterized protei 96.9 0.013 2.8E-07 52.2 11.0 103 425-549 91-193 (207)
230 KOG2053 Mitochondrial inherita 96.9 0.99 2.1E-05 49.5 37.4 185 79-277 20-218 (932)
231 KOG1130 Predicted G-alpha GTPa 96.8 0.057 1.2E-06 53.5 15.5 133 423-569 195-335 (639)
232 PF04184 ST7: ST7 protein; In 96.8 0.026 5.7E-07 57.5 13.7 109 377-487 194-321 (539)
233 KOG1586 Protein required for f 96.8 0.099 2.1E-06 48.0 15.7 106 388-493 116-227 (288)
234 KOG2610 Uncharacterized conser 96.8 0.046 9.9E-07 52.7 14.2 191 377-590 129-334 (491)
235 KOG2053 Mitochondrial inherita 96.8 0.012 2.7E-07 63.6 11.6 144 396-570 22-166 (932)
236 COG3118 Thioredoxin domain-con 96.7 0.025 5.3E-07 54.0 12.1 112 435-570 146-257 (304)
237 PF02184 HAT: HAT (Half-A-TPR) 96.5 0.0043 9.3E-08 37.5 3.6 29 84-113 3-31 (32)
238 KOG4642 Chaperone-dependent E3 96.5 0.029 6.3E-07 51.5 10.4 82 41-130 25-106 (284)
239 PF13181 TPR_8: Tetratricopept 96.5 0.0053 1.1E-07 38.3 4.2 32 424-455 2-33 (34)
240 KOG3081 Vesicle coat complex C 96.5 0.8 1.7E-05 43.2 22.6 86 398-493 188-274 (299)
241 PF03704 BTAD: Bacterial trans 96.5 0.045 9.7E-07 47.8 11.4 98 39-165 19-122 (146)
242 KOG4642 Chaperone-dependent E3 96.5 0.016 3.4E-07 53.2 8.4 89 77-168 19-107 (284)
243 smart00777 Mad3_BUB1_I Mad3/BU 96.4 0.048 1E-06 45.6 10.6 110 44-164 3-124 (125)
244 KOG2796 Uncharacterized conser 96.4 0.19 4.2E-06 47.0 15.1 72 59-130 168-240 (366)
245 PF13181 TPR_8: Tetratricopept 96.4 0.0058 1.2E-07 38.2 3.9 33 516-548 2-34 (34)
246 KOG2796 Uncharacterized conser 96.3 0.037 8E-07 51.6 10.1 58 427-488 181-239 (366)
247 KOG1585 Protein required for f 96.3 0.57 1.2E-05 43.5 17.4 117 436-568 123-246 (308)
248 KOG4648 Uncharacterized conser 96.3 0.012 2.5E-07 56.8 7.0 95 77-174 106-200 (536)
249 PF13281 DUF4071: Domain of un 96.2 0.24 5.2E-06 49.8 16.2 145 397-547 155-337 (374)
250 KOG4507 Uncharacterized conser 96.2 0.0089 1.9E-07 61.5 6.2 109 424-555 605-716 (886)
251 KOG1585 Protein required for f 96.2 0.15 3.3E-06 47.2 13.3 166 397-580 45-221 (308)
252 KOG1586 Protein required for f 96.2 0.33 7.2E-06 44.7 15.3 141 397-552 87-232 (288)
253 PF03704 BTAD: Bacterial trans 96.0 0.063 1.4E-06 46.8 10.2 65 422-490 61-125 (146)
254 KOG1941 Acetylcholine receptor 96.0 0.5 1.1E-05 46.3 16.2 136 396-545 135-276 (518)
255 PF02259 FAT: FAT domain; Int 95.9 0.29 6.4E-06 49.7 16.0 144 382-547 143-341 (352)
256 PF14561 TPR_20: Tetratricopep 95.9 0.099 2.1E-06 41.2 9.3 77 88-165 8-84 (90)
257 PF04184 ST7: ST7 protein; In 95.7 0.25 5.4E-06 50.7 13.6 137 38-196 180-321 (539)
258 PF02259 FAT: FAT domain; Int 95.7 0.17 3.8E-06 51.4 13.0 141 422-563 145-306 (352)
259 KOG0376 Serine-threonine phosp 95.6 0.026 5.6E-07 57.3 6.2 111 435-569 16-128 (476)
260 KOG3824 Huntingtin interacting 95.5 0.043 9.2E-07 52.2 6.9 67 472-558 127-193 (472)
261 KOG3616 Selective LIM binding 95.4 4.8 0.0001 43.4 30.1 43 235-277 692-734 (1636)
262 PF13174 TPR_6: Tetratricopept 95.4 0.028 6.1E-07 34.5 3.8 32 425-456 2-33 (33)
263 KOG0545 Aryl-hydrocarbon recep 95.3 0.11 2.4E-06 48.0 8.7 104 386-493 179-296 (329)
264 PF14561 TPR_20: Tetratricopep 95.1 0.22 4.7E-06 39.3 8.9 48 442-493 7-54 (90)
265 KOG2610 Uncharacterized conser 95.1 0.56 1.2E-05 45.6 13.1 146 39-197 116-274 (491)
266 PF13176 TPR_7: Tetratricopept 95.1 0.038 8.3E-07 35.0 3.8 29 251-279 1-29 (36)
267 PF13174 TPR_6: Tetratricopept 95.0 0.052 1.1E-06 33.3 4.2 32 251-282 2-33 (33)
268 COG3118 Thioredoxin domain-con 94.8 1.8 3.9E-05 41.7 15.7 113 79-197 145-263 (304)
269 KOG0545 Aryl-hydrocarbon recep 94.8 0.68 1.5E-05 43.0 12.3 96 39-135 191-297 (329)
270 KOG0376 Serine-threonine phosp 94.8 0.088 1.9E-06 53.5 7.4 89 39-135 17-105 (476)
271 PF13176 TPR_7: Tetratricopept 94.7 0.059 1.3E-06 34.1 3.9 28 425-452 1-28 (36)
272 KOG3824 Huntingtin interacting 94.7 0.094 2E-06 50.0 6.6 55 397-457 130-184 (472)
273 PF13281 DUF4071: Domain of un 94.6 3.4 7.3E-05 41.8 17.8 166 80-282 153-338 (374)
274 KOG1308 Hsp70-interacting prot 94.6 0.029 6.3E-07 54.3 3.2 86 397-492 128-213 (377)
275 COG4976 Predicted methyltransf 94.5 0.053 1.1E-06 49.5 4.6 60 469-548 3-62 (287)
276 KOG0551 Hsp90 co-chaperone CNS 94.4 0.54 1.2E-05 45.6 11.1 99 388-492 84-184 (390)
277 PF10300 DUF3808: Protein of u 94.4 1.4 3E-05 46.7 15.6 150 396-565 201-356 (468)
278 COG4976 Predicted methyltransf 94.2 0.064 1.4E-06 49.0 4.2 56 435-494 7-62 (287)
279 smart00028 TPR Tetratricopepti 94.1 0.099 2.1E-06 31.2 4.0 32 424-455 2-33 (34)
280 PF04910 Tcf25: Transcriptiona 93.9 1.4 3E-05 44.8 13.9 154 377-549 32-227 (360)
281 smart00028 TPR Tetratricopepti 93.8 0.096 2.1E-06 31.2 3.6 33 516-548 2-34 (34)
282 KOG2471 TPR repeat-containing 93.8 0.48 1E-05 48.3 9.9 136 422-560 239-380 (696)
283 PF10300 DUF3808: Protein of u 93.7 1.1 2.3E-05 47.5 13.2 123 397-544 247-376 (468)
284 KOG0551 Hsp90 co-chaperone CNS 93.7 0.23 5.1E-06 48.1 7.3 87 359-456 94-186 (390)
285 PF09986 DUF2225: Uncharacteri 93.7 0.95 2.1E-05 42.2 11.3 107 438-558 92-209 (214)
286 KOG1941 Acetylcholine receptor 93.4 0.74 1.6E-05 45.2 10.2 138 422-569 121-266 (518)
287 PF10602 RPN7: 26S proteasome 93.0 0.98 2.1E-05 40.8 9.9 104 386-492 37-144 (177)
288 PF09986 DUF2225: Uncharacteri 92.5 0.85 1.8E-05 42.5 9.1 95 398-492 92-196 (214)
289 KOG1308 Hsp70-interacting prot 92.3 0.092 2E-06 51.0 2.4 90 435-548 126-215 (377)
290 COG2976 Uncharacterized protei 91.6 1.5 3.2E-05 39.5 9.0 90 396-493 102-191 (207)
291 PRK10941 hypothetical protein; 91.5 1.7 3.7E-05 42.0 10.2 60 472-551 192-251 (269)
292 KOG2422 Uncharacterized conser 91.3 14 0.0003 39.0 16.7 145 377-546 276-450 (665)
293 PF11207 DUF2989: Protein of u 90.9 4.6 9.9E-05 36.8 11.5 54 514-568 140-197 (203)
294 PRK10941 hypothetical protein; 90.7 1.5 3.3E-05 42.3 9.0 57 79-135 192-248 (269)
295 KOG3807 Predicted membrane pro 90.6 6.7 0.00014 38.3 12.9 36 377-412 210-245 (556)
296 PF10602 RPN7: 26S proteasome 90.6 3.8 8.2E-05 37.0 11.0 109 423-546 36-144 (177)
297 PF14853 Fis1_TPR_C: Fis1 C-te 90.4 1.5 3.3E-05 30.5 6.3 32 426-457 4-35 (53)
298 PF14853 Fis1_TPR_C: Fis1 C-te 90.0 1.7 3.6E-05 30.3 6.3 36 523-558 9-44 (53)
299 PF04053 Coatomer_WDAD: Coatom 89.5 14 0.00031 38.7 15.6 60 424-487 296-373 (443)
300 KOG0530 Protein farnesyltransf 89.4 9.3 0.0002 36.2 12.4 110 436-569 56-167 (318)
301 PF13374 TPR_10: Tetratricopep 89.4 0.73 1.6E-05 29.8 4.1 29 516-544 3-31 (42)
302 PF04910 Tcf25: Transcriptiona 88.9 19 0.00042 36.6 15.8 110 14-128 27-165 (360)
303 PF08631 SPO22: Meiosis protei 88.6 6.3 0.00014 38.6 11.8 58 434-491 4-66 (278)
304 PF08631 SPO22: Meiosis protei 87.8 22 0.00048 34.7 15.1 129 396-545 6-151 (278)
305 COG3914 Spy Predicted O-linked 87.6 14 0.0003 39.2 13.5 133 402-558 50-185 (620)
306 KOG4507 Uncharacterized conser 87.2 5.6 0.00012 41.8 10.4 141 400-569 196-337 (886)
307 KOG2300 Uncharacterized conser 87.0 11 0.00024 38.9 12.1 139 423-577 7-155 (629)
308 PF09613 HrpB1_HrpK: Bacterial 86.4 14 0.0003 32.4 11.1 113 423-561 10-122 (160)
309 PF04781 DUF627: Protein of un 86.3 8.9 0.00019 31.2 9.1 93 36-131 6-107 (111)
310 KOG0985 Vesicle coat protein c 85.3 76 0.0016 36.3 23.4 233 14-297 1026-1264(1666)
311 PF12862 Apc5: Anaphase-promot 84.6 8.7 0.00019 30.4 8.5 59 397-455 12-73 (94)
312 KOG4814 Uncharacterized conser 84.4 5.3 0.00012 42.4 8.8 102 387-492 357-459 (872)
313 PF13374 TPR_10: Tetratricopep 83.7 2.3 5.1E-05 27.2 4.2 29 424-452 3-31 (42)
314 KOG1464 COP9 signalosome, subu 83.7 28 0.00061 33.2 12.3 159 4-168 2-174 (440)
315 COG3629 DnrI DNA-binding trans 83.6 14 0.0003 35.9 10.7 62 103-167 154-215 (280)
316 COG3947 Response regulator con 83.2 22 0.00048 34.3 11.6 59 104-165 281-339 (361)
317 PF10345 Cohesin_load: Cohesin 83.1 40 0.00086 37.3 15.8 160 380-570 25-200 (608)
318 PF12968 DUF3856: Domain of Un 83.0 17 0.00037 30.0 9.3 106 462-579 8-130 (144)
319 PF12862 Apc5: Anaphase-promot 82.7 3.9 8.5E-05 32.4 5.8 59 434-492 9-72 (94)
320 KOG0890 Protein kinase of the 82.7 1.4E+02 0.0031 37.5 31.7 165 386-560 1630-1800(2382)
321 PF11207 DUF2989: Protein of u 82.4 10 0.00023 34.5 8.9 82 433-535 116-198 (203)
322 KOG0985 Vesicle coat protein c 81.8 1E+02 0.0023 35.3 35.8 159 88-275 967-1130(1666)
323 PF04053 Coatomer_WDAD: Coatom 81.7 9 0.00019 40.1 9.5 99 115-276 274-374 (443)
324 PF04781 DUF627: Protein of un 80.6 24 0.00052 28.8 9.4 27 431-457 4-30 (111)
325 KOG2041 WD40 repeat protein [G 80.3 96 0.0021 33.9 25.9 27 249-275 796-822 (1189)
326 PF13041 PPR_2: PPR repeat fam 80.2 7 0.00015 26.5 5.6 45 514-558 2-47 (50)
327 KOG2041 WD40 repeat protein [G 79.9 42 0.00091 36.5 13.3 32 243-275 847-878 (1189)
328 COG0790 FOG: TPR repeat, SEL1 79.2 66 0.0014 31.4 17.0 141 386-563 74-236 (292)
329 PF07721 TPR_4: Tetratricopept 79.0 3.2 7E-05 23.8 3.1 22 426-447 4-25 (26)
330 PF10579 Rapsyn_N: Rapsyn N-te 78.7 5.3 0.00012 30.2 4.8 44 527-570 18-64 (80)
331 KOG2422 Uncharacterized conser 78.7 90 0.0019 33.3 15.1 146 20-173 277-453 (665)
332 COG3629 DnrI DNA-binding trans 77.9 11 0.00023 36.6 8.0 65 422-490 152-216 (280)
333 PF07721 TPR_4: Tetratricopept 77.9 3.2 7E-05 23.8 2.8 24 251-274 3-26 (26)
334 KOG1538 Uncharacterized conser 77.3 82 0.0018 34.1 14.4 33 245-277 800-832 (1081)
335 PF15297 CKAP2_C: Cytoskeleton 76.6 10 0.00022 37.6 7.4 66 399-467 119-184 (353)
336 KOG0530 Protein farnesyltransf 76.4 74 0.0016 30.5 15.4 160 372-561 64-233 (318)
337 COG1747 Uncharacterized N-term 76.1 69 0.0015 33.6 13.2 56 527-582 217-276 (711)
338 KOG2471 TPR repeat-containing 75.7 1.1E+02 0.0024 32.1 18.4 67 80-148 295-379 (696)
339 PF07720 TPR_3: Tetratricopept 75.7 8.7 0.00019 24.2 4.5 21 425-445 3-23 (36)
340 smart00299 CLH Clathrin heavy 75.5 49 0.0011 28.1 11.0 44 82-126 21-64 (140)
341 TIGR03504 FimV_Cterm FimV C-te 75.0 5.2 0.00011 26.6 3.5 26 253-278 3-28 (44)
342 KOG1550 Extracellular protein 74.4 82 0.0018 34.3 14.6 134 383-545 242-394 (552)
343 KOG1839 Uncharacterized protei 74.1 16 0.00035 42.4 9.2 157 403-577 958-1127(1236)
344 KOG0529 Protein geranylgeranyl 73.3 14 0.00031 37.3 7.6 50 439-492 352-404 (421)
345 KOG3364 Membrane protein invol 72.9 48 0.001 28.2 9.4 60 475-553 49-109 (149)
346 PRK13184 pknD serine/threonine 72.5 34 0.00073 39.4 11.3 98 433-552 485-589 (932)
347 PF07720 TPR_3: Tetratricopept 72.4 11 0.00023 23.8 4.3 33 516-548 2-36 (36)
348 KOG1920 IkappaB kinase complex 71.0 1.8E+02 0.004 34.0 16.1 62 100-163 865-932 (1265)
349 TIGR03504 FimV_Cterm FimV C-te 71.0 7.7 0.00017 25.8 3.6 23 428-450 4-26 (44)
350 COG3914 Spy Predicted O-linked 70.3 45 0.00097 35.6 10.6 108 437-569 45-155 (620)
351 KOG3807 Predicted membrane pro 69.9 1.1E+02 0.0024 30.2 12.4 109 39-171 197-307 (556)
352 PF12854 PPR_1: PPR repeat 69.9 9.5 0.00021 23.5 3.7 27 514-540 6-32 (34)
353 KOG1550 Extracellular protein 69.8 1E+02 0.0022 33.6 14.0 124 399-560 228-371 (552)
354 TIGR02996 rpt_mate_G_obs repea 68.8 13 0.00027 24.3 4.0 31 90-120 4-34 (42)
355 COG3947 Response regulator con 68.2 19 0.00041 34.8 6.8 61 423-487 279-339 (361)
356 KOG3783 Uncharacterized conser 68.1 1.7E+02 0.0037 31.1 22.8 68 426-493 452-523 (546)
357 KOG3364 Membrane protein invol 67.6 14 0.00031 31.2 5.3 56 398-457 50-105 (149)
358 PF01535 PPR: PPR repeat; Int 67.1 9.4 0.0002 22.3 3.3 28 517-544 2-29 (31)
359 PF14929 TAF1_subA: TAF RNA Po 66.7 1.6E+02 0.0035 31.7 14.3 121 438-586 359-492 (547)
360 PF10516 SHNi-TPR: SHNi-TPR; 66.3 11 0.00025 24.0 3.5 28 425-452 3-30 (38)
361 KOG1310 WD40 repeat protein [G 65.9 37 0.00081 35.6 8.9 89 82-173 388-479 (758)
362 PF11846 DUF3366: Domain of un 65.3 15 0.00033 33.6 5.8 50 477-547 127-176 (193)
363 PF10516 SHNi-TPR: SHNi-TPR; 65.0 14 0.0003 23.6 3.8 30 250-279 2-31 (38)
364 PF12854 PPR_1: PPR repeat 64.8 18 0.00038 22.3 4.2 25 424-448 8-32 (34)
365 KOG1310 WD40 repeat protein [G 64.7 26 0.00056 36.7 7.5 90 40-134 388-477 (758)
366 COG2912 Uncharacterized conser 64.6 20 0.00043 34.4 6.3 59 432-494 190-248 (269)
367 KOG4014 Uncharacterized conser 64.5 1.1E+02 0.0024 27.6 13.2 156 383-560 32-211 (248)
368 KOG4279 Serine/threonine prote 64.1 37 0.00081 37.1 8.7 130 397-547 257-398 (1226)
369 PF13041 PPR_2: PPR repeat fam 63.3 23 0.0005 23.8 5.1 30 250-279 4-33 (50)
370 cd00280 TRFH Telomeric Repeat 63.0 34 0.00075 30.7 7.0 64 41-106 84-148 (200)
371 TIGR02996 rpt_mate_G_obs repea 62.6 21 0.00046 23.3 4.2 33 13-45 2-35 (42)
372 cd02680 MIT_calpain7_2 MIT: do 61.4 11 0.00023 28.5 3.2 18 527-544 18-35 (75)
373 cd02682 MIT_AAA_Arch MIT: doma 60.9 22 0.00049 26.7 4.8 20 531-550 29-48 (75)
374 KOG0890 Protein kinase of the 60.4 2.1E+02 0.0045 36.3 14.8 104 422-547 1628-1735(2382)
375 KOG0687 26S proteasome regulat 60.3 1.4E+02 0.0031 29.5 11.2 71 422-492 103-179 (393)
376 COG5187 RPN7 26S proteasome re 60.0 1.1E+02 0.0023 29.7 10.1 73 380-452 68-144 (412)
377 COG2909 MalT ATP-dependent tra 59.1 3.1E+02 0.0068 31.1 24.8 163 392-569 467-638 (894)
378 PF15297 CKAP2_C: Cytoskeleton 59.1 59 0.0013 32.4 8.6 67 477-560 119-186 (353)
379 TIGR00756 PPR pentatricopeptid 58.2 24 0.00053 21.0 4.1 27 518-544 3-29 (35)
380 KOG0276 Vesicle coat complex C 57.6 44 0.00094 35.7 7.8 55 514-568 665-727 (794)
381 COG2912 Uncharacterized conser 57.6 68 0.0015 30.8 8.6 68 471-558 191-258 (269)
382 KOG1166 Mitotic checkpoint ser 57.3 1.4E+02 0.0031 34.6 12.4 128 15-152 20-163 (974)
383 PF11846 DUF3366: Domain of un 55.5 46 0.00099 30.4 7.1 53 81-134 124-176 (193)
384 COG4649 Uncharacterized protei 53.8 1.7E+02 0.0036 26.3 16.7 149 385-560 59-211 (221)
385 PF09670 Cas_Cas02710: CRISPR- 52.1 1.9E+02 0.0042 29.7 11.6 52 397-452 145-198 (379)
386 KOG1538 Uncharacterized conser 51.2 3.6E+02 0.0079 29.5 17.7 27 104-130 587-613 (1081)
387 PF11817 Foie-gras_1: Foie gra 50.5 1.3E+02 0.0028 28.8 9.6 83 402-484 157-241 (247)
388 PF09613 HrpB1_HrpK: Bacterial 49.9 1.8E+02 0.004 25.6 14.6 55 397-457 24-78 (160)
389 COG5159 RPN6 26S proteasome re 49.5 87 0.0019 30.3 7.7 25 428-452 8-32 (421)
390 PF12583 TPPII_N: Tripeptidyl 47.8 64 0.0014 27.1 5.8 43 28-70 70-120 (139)
391 PRK15180 Vi polysaccharide bio 47.5 94 0.002 32.3 8.1 27 527-553 403-429 (831)
392 PF10373 EST1_DNA_bind: Est1 D 47.2 55 0.0012 31.7 6.7 62 480-561 1-62 (278)
393 PF10373 EST1_DNA_bind: Est1 D 46.4 23 0.0005 34.4 3.9 36 534-569 1-36 (278)
394 smart00299 CLH Clathrin heavy 46.0 1.8E+02 0.004 24.5 12.6 46 435-485 19-64 (140)
395 KOG4279 Serine/threonine prote 46.0 56 0.0012 35.9 6.6 146 385-542 201-371 (1226)
396 KOG2581 26S proteasome regulat 45.9 3.4E+02 0.0074 27.9 11.5 111 423-551 169-283 (493)
397 PRK15180 Vi polysaccharide bio 45.4 94 0.002 32.4 7.7 124 435-582 301-431 (831)
398 KOG1464 COP9 signalosome, subu 45.2 2.9E+02 0.0063 26.6 14.4 169 80-283 39-225 (440)
399 KOG1920 IkappaB kinase complex 44.2 1.4E+02 0.0031 34.8 9.6 82 398-491 888-969 (1265)
400 KOG0529 Protein geranylgeranyl 43.9 2.7E+02 0.006 28.5 10.7 99 438-560 90-194 (421)
401 KOG4814 Uncharacterized conser 43.4 2.6E+02 0.0056 30.5 10.7 68 425-493 357-426 (872)
402 PF09205 DUF1955: Domain of un 42.4 2.2E+02 0.0047 24.4 9.8 80 397-491 70-150 (161)
403 PF04840 Vps16_C: Vps16, C-ter 41.7 2.6E+02 0.0056 28.0 10.4 25 516-540 238-262 (319)
404 PF09670 Cas_Cas02710: CRISPR- 41.6 3.9E+02 0.0085 27.4 12.0 72 22-97 124-198 (379)
405 KOG0889 Histone acetyltransfer 41.4 1.1E+03 0.023 32.0 24.6 48 514-561 2811-2858(3550)
406 cd02684 MIT_2 MIT: domain cont 41.3 36 0.00078 25.6 3.3 17 527-543 18-34 (75)
407 PF00244 14-3-3: 14-3-3 protei 41.2 66 0.0014 30.5 5.9 51 399-451 142-197 (236)
408 TIGR02561 HrpB1_HrpK type III 40.9 2.5E+02 0.0053 24.5 10.0 62 427-492 14-75 (153)
409 smart00101 14_3_3 14-3-3 homol 40.4 1.2E+02 0.0026 28.9 7.4 51 399-451 144-199 (244)
410 PF14929 TAF1_subA: TAF RNA Po 40.1 5.2E+02 0.011 28.0 13.5 110 28-150 298-423 (547)
411 PF00637 Clathrin: Region in C 39.6 3.6 7.8E-05 35.5 -2.8 113 435-564 19-140 (143)
412 PF13812 PPR_3: Pentatricopept 39.3 63 0.0014 19.1 3.8 28 517-544 3-30 (34)
413 KOG2066 Vacuolar assembly/sort 39.3 6E+02 0.013 28.6 21.8 27 251-277 507-533 (846)
414 KOG1972 Uncharacterized conser 38.8 1.4E+02 0.003 33.3 8.3 37 98-134 832-868 (913)
415 PF15015 NYD-SP12_N: Spermatog 38.7 1.3E+02 0.0028 30.9 7.4 51 519-569 232-282 (569)
416 PF02064 MAS20: MAS20 protein 38.6 62 0.0013 27.0 4.5 39 252-290 66-104 (121)
417 cd02683 MIT_1 MIT: domain cont 38.6 44 0.00096 25.3 3.4 14 529-542 20-33 (77)
418 COG4941 Predicted RNA polymera 38.6 2.1E+02 0.0045 28.5 8.6 92 437-551 310-401 (415)
419 COG4455 ImpE Protein of avirul 37.5 1.6E+02 0.0036 27.4 7.3 69 472-560 12-83 (273)
420 PRK15490 Vi polysaccharide bio 37.3 3E+02 0.0066 29.9 10.5 77 397-485 22-98 (578)
421 PF10579 Rapsyn_N: Rapsyn N-te 37.0 1.7E+02 0.0036 22.4 6.1 29 82-110 20-48 (80)
422 cd02681 MIT_calpain7_1 MIT: do 35.6 46 0.00099 25.2 3.0 18 527-544 18-35 (76)
423 PF12968 DUF3856: Domain of Un 35.4 2.7E+02 0.0058 23.3 10.4 108 423-543 7-128 (144)
424 PF01239 PPTA: Protein prenylt 35.3 98 0.0021 18.3 4.2 28 535-562 3-30 (31)
425 KOG1811 Predicted Zn2+-binding 34.9 1.8E+02 0.004 31.2 8.1 66 422-492 586-655 (1141)
426 KOG0686 COP9 signalosome, subu 34.9 1.3E+02 0.0029 30.7 6.9 147 389-540 154-329 (466)
427 KOG1811 Predicted Zn2+-binding 34.7 5.7E+02 0.012 27.7 11.6 33 462-494 588-620 (1141)
428 KOG3783 Uncharacterized conser 34.2 6.1E+02 0.013 27.1 17.6 65 391-455 455-523 (546)
429 cd02679 MIT_spastin MIT: domai 33.1 66 0.0014 24.5 3.6 16 475-490 22-37 (79)
430 cd00280 TRFH Telomeric Repeat 31.7 3E+02 0.0065 24.9 7.8 17 473-489 123-139 (200)
431 PF09797 NatB_MDM20: N-acetylt 31.6 60 0.0013 33.1 4.3 45 531-575 199-243 (365)
432 cd02677 MIT_SNX15 MIT: domain 31.5 1.9E+02 0.004 21.8 5.8 14 85-98 4-17 (75)
433 cd02678 MIT_VPS4 MIT: domain c 31.3 59 0.0013 24.4 3.1 17 527-543 18-34 (75)
434 PF07079 DUF1347: Protein of u 30.7 6.6E+02 0.014 26.4 35.8 125 39-168 19-157 (549)
435 KOG4318 Bicoid mRNA stability 30.1 6.9E+02 0.015 28.7 11.7 112 429-563 713-828 (1088)
436 PF12753 Nro1: Nuclear pore co 29.4 95 0.0021 31.6 5.0 47 83-131 333-391 (404)
437 PF00244 14-3-3: 14-3-3 protei 29.0 1.7E+02 0.0036 27.8 6.5 51 439-490 142-198 (236)
438 PF13226 DUF4034: Domain of un 27.9 5.8E+02 0.012 24.9 12.5 130 34-178 8-138 (277)
439 KOG2997 F-box protein FBX9 [Ge 27.9 82 0.0018 31.0 4.0 37 400-457 17-53 (366)
440 PF14863 Alkyl_sulf_dimr: Alky 27.5 2E+02 0.0043 24.8 6.0 42 526-567 81-122 (141)
441 COG0790 FOG: TPR repeat, SEL1 26.7 5.9E+02 0.013 24.6 15.9 101 381-492 105-222 (292)
442 PF09205 DUF1955: Domain of un 26.7 2.9E+02 0.0064 23.6 6.5 55 110-167 94-148 (161)
443 PRK15326 type III secretion sy 26.3 2.3E+02 0.0051 21.6 5.4 46 522-567 14-59 (80)
444 TIGR02561 HrpB1_HrpK type III 25.8 4.5E+02 0.0098 22.9 11.8 55 397-457 24-78 (153)
445 PF08640 U3_assoc_6: U3 small 25.3 54 0.0012 25.3 2.0 41 11-53 27-67 (83)
446 PRK15490 Vi polysaccharide bio 25.2 2.7E+02 0.0058 30.3 7.7 33 529-563 56-88 (578)
447 KOG0686 COP9 signalosome, subu 25.2 7.5E+02 0.016 25.6 10.2 147 424-583 151-316 (466)
448 KOG1972 Uncharacterized conser 25.1 2.9E+02 0.0063 31.0 7.9 138 22-173 717-870 (913)
449 PF09797 NatB_MDM20: N-acetylt 25.0 7.4E+02 0.016 25.1 12.4 46 437-486 197-242 (365)
450 COG2909 MalT ATP-dependent tra 25.0 1.1E+03 0.024 27.1 29.1 60 427-487 622-685 (894)
451 KOG0276 Vesicle coat complex C 24.9 9.4E+02 0.02 26.3 11.7 30 100-129 664-693 (794)
452 PF05053 Menin: Menin; InterP 24.7 9.1E+02 0.02 26.1 13.2 66 421-488 275-345 (618)
453 PRK13184 pknD serine/threonine 23.9 1.2E+03 0.026 27.3 18.2 38 257-294 483-521 (932)
454 KOG0687 26S proteasome regulat 23.7 3.6E+02 0.0078 26.9 7.5 100 385-493 104-213 (393)
455 COG4455 ImpE Protein of avirul 22.9 6.4E+02 0.014 23.7 11.8 109 435-549 13-139 (273)
456 KOG1166 Mitotic checkpoint ser 22.9 1.3E+03 0.028 27.2 14.6 104 60-169 34-144 (974)
457 COG5536 BET4 Protein prenyltra 22.8 4.3E+02 0.0092 25.8 7.6 99 8-108 89-190 (328)
458 PF04212 MIT: MIT (microtubule 22.4 1.6E+02 0.0035 21.4 4.1 27 252-278 8-34 (69)
459 TIGR00985 3a0801s04tom mitocho 21.6 1.6E+02 0.0034 25.6 4.2 38 252-289 93-131 (148)
460 PF11817 Foie-gras_1: Foie gra 21.6 3.8E+02 0.0083 25.5 7.6 82 475-570 152-239 (247)
461 KOG2066 Vacuolar assembly/sort 21.0 5.9E+02 0.013 28.6 9.2 30 551-580 507-536 (846)
462 PF02064 MAS20: MAS20 protein 20.8 2.2E+02 0.0048 23.8 4.9 30 106-135 67-96 (121)
463 smart00101 14_3_3 14-3-3 homol 20.6 7.5E+02 0.016 23.6 13.7 40 531-570 144-192 (244)
464 KOG2114 Vacuolar assembly/sort 20.6 1.3E+03 0.028 26.4 11.6 111 455-569 362-483 (933)
465 COG4259 Uncharacterized protei 20.3 4.6E+02 0.01 21.1 6.6 36 422-457 71-106 (121)
466 KOG1839 Uncharacterized protei 20.1 3.7E+02 0.0079 32.0 7.9 115 377-492 965-1088(1236)
No 1
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=100.00 E-value=6.3e-66 Score=510.12 Aligned_cols=533 Identities=61% Similarity=1.011 Sum_probs=495.5
Q ss_pred CCCCCCCCCCcchHhHHHHhhCCCCHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCc
Q 007648 2 AISKELYPSEDDLLYEEELLRNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITH 81 (594)
Q Consensus 2 ~~~~~~~~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~ 81 (594)
.++...++++.|.+||+.|.+||.|...|++||++.......+...+|||||+..|.|..+|..|+.....++..+|.+.
T Consensus 2 ~~n~dl~~~~EDvpfEeEilRnp~svk~W~RYIe~k~~sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~ 81 (835)
T KOG2047|consen 2 IENVDLNFENEDVPFEEEILRNPFSVKCWLRYIEHKAGSPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTD 81 (835)
T ss_pred CCCccccccccccchHHHHHcCchhHHHHHHHHHHHccCChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCC
Confidence 34556778889999999999999999999999999888888999999999999999999999999998888888899999
Q ss_pred hhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHH
Q 007648 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRV 161 (594)
Q Consensus 82 ~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~ 161 (594)
.-++.....|++++....+.|.+|..|+++.++|+++...|..|.|||...|..+|..+|..|+.|....+-+ +.++.+
T Consensus 82 ~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lP-ets~rv 160 (835)
T KOG2047|consen 82 PAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLP-ETSIRV 160 (835)
T ss_pred hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCCh-HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988999999999999999999 999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHH
Q 007648 162 YRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGI 241 (594)
Q Consensus 162 ~~~~l~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (594)
|++.|++.|...+.|+.++...++.++|.+.|..+++++.|.+..|++.+++|.++++++..+|+.+.+.+.+++++.++
T Consensus 161 yrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi 240 (835)
T KOG2047|consen 161 YRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI 240 (835)
T ss_pred HHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred hhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccC
Q 007648 242 RKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHG 321 (594)
Q Consensus 242 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (594)
.+||+....+|..||++|++.|.+++|+++|+++++..-+..++..+|+.|+.||+......++ +......
T Consensus 241 ~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~-------- 311 (835)
T KOG2047|consen 241 RRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKME-LADEESG-------- 311 (835)
T ss_pred ccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHh-hhhhccc--------
Confidence 9999999999999999999999999999999999999999999999999999999998776665 2111110
Q ss_pred CcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhcCCchh
Q 007648 322 SAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTK 401 (594)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 401 (594)
++ ++..+++.+++.|+.+++.++.++|..+|++||+|+..|+..+.+++|++.+
T Consensus 312 -----------------------n~---ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~ 365 (835)
T KOG2047|consen 312 -----------------------NE---EDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAE 365 (835)
T ss_pred -----------------------Ch---hhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHH
Confidence 00 1133577788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHH
Q 007648 402 QILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGAL 481 (594)
Q Consensus 402 a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~ 481 (594)
...+|..|++.++|.+.+|+...+|..+|.+|+..|+++.||.+|++|++.+....+.+..+|+.||.+++++.+++.|+
T Consensus 366 ~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al 445 (835)
T KOG2047|consen 366 QINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAAL 445 (835)
T ss_pred HHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 99999999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHhhhhh-ccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 007648 482 ELMRRATAEPSVEVRRRVA-ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLE 560 (594)
Q Consensus 482 ~~~~~al~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~ 560 (594)
++.++|+..+... .++ +++..+.|.+++.|..+|..|+|++..+|.++..+.+|++.+.+....|++.+|||.|+.
T Consensus 446 ~lm~~A~~vP~~~---~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLE 522 (835)
T KOG2047|consen 446 KLMRRATHVPTNP---ELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE 522 (835)
T ss_pred HHHHhhhcCCCch---hhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999885431 233 677778899999999999999999999999999999999999999999999999999999
Q ss_pred Hhchhhhhhhccc
Q 007648 561 VWTLLHVFLLHVP 573 (594)
Q Consensus 561 ~~g~~~~a~~~~~ 573 (594)
.+..|+++-+.|.
T Consensus 523 eh~yfeesFk~YE 535 (835)
T KOG2047|consen 523 EHKYFEESFKAYE 535 (835)
T ss_pred hhHHHHHHHHHHH
Confidence 9999999976554
No 2
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.3e-47 Score=367.91 Aligned_cols=425 Identities=21% Similarity=0.360 Sum_probs=357.8
Q ss_pred cchHhHHHHhhCCCCHHHHHHHHHHHH-cCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHH
Q 007648 12 DDLLYEEELLRNPFSLKLWWRYLVAKR-EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNT 90 (594)
Q Consensus 12 ~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~ 90 (594)
+++.||..|+++..+...|++|++++. .+++.+|+++|+|||..+..+..+|+.|++++++. ..+..|+.+
T Consensus 58 kRkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emkn--------k~vNhARNv 129 (677)
T KOG1915|consen 58 KRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKN--------KQVNHARNV 129 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhh--------hhHhHHHHH
Confidence 368899999999999999999999886 78999999999999999999999999999999654 567899999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCC
Q 007648 91 FERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDP 170 (594)
Q Consensus 91 ~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p 170 (594)
++||+.+.|.-..+|+.|..++...||+..||++|+|.+...|. ...|..+..|+.+.+.. ++|+.+|++.+-.+|
T Consensus 130 ~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~---eqaW~sfI~fElRykei-eraR~IYerfV~~HP 205 (677)
T KOG1915|consen 130 WDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD---EQAWLSFIKFELRYKEI-ERARSIYERFVLVHP 205 (677)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHhhHH-HHHHHHHHHHheecc
Confidence 99999999999999999999999999999999999999999997 58999999999999888 999999999999999
Q ss_pred CCHH--HHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchh
Q 007648 171 SHIE--DFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEV 248 (594)
Q Consensus 171 ~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 248 (594)
.-.. .|+++..+.|...-++++|+.++. ++ +++ ...
T Consensus 206 ~v~~wikyarFE~k~g~~~~aR~VyerAie---------------------~~---~~d------------------~~~ 243 (677)
T KOG1915|consen 206 KVSNWIKYARFEEKHGNVALARSVYERAIE---------------------FL---GDD------------------EEA 243 (677)
T ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHH---------------------Hh---hhH------------------HHH
Confidence 8653 577788888888888888877762 00 000 011
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhh
Q 007648 249 GRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDI 328 (594)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 328 (594)
..+....|.+..+++.++.|+-+|+-||+..|.+.. ..+|..|..||++.+ +..+.
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ra-eeL~k~~~~fEKqfG--------d~~gI--------------- 299 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRA-EELYKKYTAFEKQFG--------DKEGI--------------- 299 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHHhc--------chhhh---------------
Confidence 468899999999999999999999999999998753 478999999998743 22211
Q ss_pred HhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CCchhHHHHH
Q 007648 329 RLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTY 406 (594)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y 406 (594)
++ ..+.+..-.|++ .++.||.|.++|+-+.++.. |+.++.+++|
T Consensus 300 ---------------------Ed-~Iv~KRk~qYE~------------~v~~np~nYDsWfdylrL~e~~g~~~~Ire~y 345 (677)
T KOG1915|consen 300 ---------------------ED-AIVGKRKFQYEK------------EVSKNPYNYDSWFDYLRLEESVGDKDRIRETY 345 (677)
T ss_pred ---------------------HH-HHhhhhhhHHHH------------HHHhCCCCchHHHHHHHHHHhcCCHHHHHHHH
Confidence 10 123344556888 58999999999999999986 8999999999
Q ss_pred HHHHhccCCCcc---cCCchHHHHHHHHHHH-hcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHH
Q 007648 407 TEAVRTVDPMKA---VGKPHTLWVAFAKLYE-TYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALE 482 (594)
Q Consensus 407 ~~Ai~~~~~~~~---~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 482 (594)
++||..+||... +..+..+|++|+.+++ ...|.++++++|+.+|++.|..-.++..+|+.|+++++++.++..||+
T Consensus 346 ErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARk 425 (677)
T KOG1915|consen 346 ERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARK 425 (677)
T ss_pred HHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHH
Confidence 999999998532 2347899999999877 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHh
Q 007648 483 LMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVW 562 (594)
Q Consensus 483 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~ 562 (594)
++-.|+..+|. +.++-.|++++.+++++|.+|++|+|-|...|.+..+|..+|.+...+
T Consensus 426 iLG~AIG~cPK---------------------~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~L 484 (677)
T KOG1915|consen 426 ILGNAIGKCPK---------------------DKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSL 484 (677)
T ss_pred HHHHHhccCCc---------------------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHh
Confidence 99999999994 356666777777777777777777777777777777777777777777
Q ss_pred chhhhhh
Q 007648 563 TLLHVFL 569 (594)
Q Consensus 563 g~~~~a~ 569 (594)
|+.+.|.
T Consensus 485 gdtdRaR 491 (677)
T KOG1915|consen 485 GDTDRAR 491 (677)
T ss_pred hhHHHHH
Confidence 7666654
No 3
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.5e-37 Score=297.37 Aligned_cols=464 Identities=19% Similarity=0.277 Sum_probs=358.2
Q ss_pred CCcchHhHHHHhhCCCCHHHHHHHHHHHH-cCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHH
Q 007648 10 SEDDLLYEEELLRNPFSLKLWWRYLVAKR-EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLN 88 (594)
Q Consensus 10 ~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~ 88 (594)
.+++-.+|++|..+..+...|++|+++++ ......|+.++.||+..-|.--.+|..|+-++ ...|++..|+
T Consensus 90 ~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE--------E~LgNi~gaR 161 (677)
T KOG1915|consen 90 QRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME--------EMLGNIAGAR 161 (677)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH--------HHhcccHHHH
Confidence 34567899999999999999999999998 56679999999999999999999999999887 3448899999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhh
Q 007648 89 NTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKY 168 (594)
Q Consensus 89 ~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~ 168 (594)
.+|+|=+...|+ ...|..|+.|+.+.+.++.||.+|+|-+-.+|. ..-|..|+.|+...|+. .-|+++|+++++.
T Consensus 162 qiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~---v~~wikyarFE~k~g~~-~~aR~VyerAie~ 236 (677)
T KOG1915|consen 162 QIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK---VSNWIKYARFEEKHGNV-ALARSVYERAIEF 236 (677)
T ss_pred HHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc---HHHHHHHHHHHHhcCcH-HHHHHHHHHHHHH
Confidence 999999999998 599999999999999999999999999999997 58899999999999998 9999999999988
Q ss_pred CCCCHH------HHHHHHHhcccHHHHHHHHHHhhcCccccccccc-chHHHHHHHHHHHhhcccccccCcH-----HHH
Q 007648 169 DPSHIE------DFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGK-TKHRLWLELCDLLTTHATEISGLNV-----DAI 236 (594)
Q Consensus 169 ~p~~~~------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~-----~~~ 236 (594)
..++.+ .++.+...++.+++|+.+|+-++.. .|+ -...++..|..+++..|+...-.++ .--
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~------~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH------IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 766553 4567888999999999999999841 112 2457889999999999874210000 012
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccc------hHHHHHHHHHHHHHHHHHHhcCCCCC
Q 007648 237 IRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRD------FSVIFDSYSQFEEIMVSAKMAKPDLS 310 (594)
Q Consensus 237 ~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~l~~~~~~~e~~~~~~~l~~~~~~ 310 (594)
++..+...|-+ -+.|..+..+....|+.+..+++|++|+...|.... +..+|..|+.+++..
T Consensus 311 YE~~v~~np~n-YDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle----------- 378 (677)
T KOG1915|consen 311 YEKEVSKNPYN-YDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELE----------- 378 (677)
T ss_pred HHHHHHhCCCC-chHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 34566677776 589999999999999999999999999998887542 234444444444421
Q ss_pred CcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCC----hH
Q 007648 311 VEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHN----VE 386 (594)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~----~~ 386 (594)
..++..+..+|+. ++..-|+. +.
T Consensus 379 -----------------------------------------~ed~ertr~vyq~------------~l~lIPHkkFtFaK 405 (677)
T KOG1915|consen 379 -----------------------------------------AEDVERTRQVYQA------------CLDLIPHKKFTFAK 405 (677)
T ss_pred -----------------------------------------hhhHHHHHHHHHH------------HHhhcCcccchHHH
Confidence 1123334455555 34455552 56
Q ss_pred HHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHH
Q 007648 387 QWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIW 464 (594)
Q Consensus 387 ~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~ 464 (594)
+|+.++.++. .+...|++++-.||-.||. ..+.-.|..++.+.+++|++|.+|++-|+..|++. ..|
T Consensus 406 iWlmyA~feIRq~~l~~ARkiLG~AIG~cPK-------~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c----~~W 474 (677)
T KOG1915|consen 406 IWLMYAQFEIRQLNLTGARKILGNAIGKCPK-------DKLFKGYIELELQLREFDRCRKLYEKFLEFSPENC----YAW 474 (677)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhccCCc-------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhh----HHH
Confidence 6777777663 4677777777777776654 24455556667777777777777777777777777 777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhc
Q 007648 465 CEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL 544 (594)
Q Consensus 465 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 544 (594)
..||.++...|+.++||.+|+-|++.+.-+ +...+|..|++|+...|.++.||++|++.|+.
T Consensus 475 ~kyaElE~~LgdtdRaRaifelAi~qp~ld------------------mpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 475 SKYAELETSLGDTDRARAIFELAISQPALD------------------MPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCcccc------------------cHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 777777777777777777777777764311 23578999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHH-----Hhc------------------hhhhhhh----------cccCcccchhhhhhhhe
Q 007648 545 RIATPQIIINYALLLE-----VWT------------------LLHVFLL----------HVPFTFSGLCMFTFFFT 587 (594)
Q Consensus 545 ~P~~~~~~~~~~~~~~-----~~g------------------~~~~a~~----------~~~~~~~~~~~~~~~~~ 587 (594)
.+..+ +|+.++.|.. +.| -|++|.. ..-++.+|..|+++|=|
T Consensus 537 t~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~ 611 (677)
T KOG1915|consen 537 TQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGT 611 (677)
T ss_pred cccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc
Confidence 87665 9999999977 222 3555543 33356688888888764
No 4
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=9.5e-36 Score=296.42 Aligned_cols=484 Identities=20% Similarity=0.190 Sum_probs=364.9
Q ss_pred HhHHHHhhCCCCHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q 007648 15 LYEEELLRNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERA 94 (594)
Q Consensus 15 ~~e~~l~~~P~~~~~w~~~~~~~~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 94 (594)
....+++..|.+...|.+.++.+ .+...-..++++||+.+|+|+.+|...++++ +-+.|+.++.||
T Consensus 337 vvA~Avr~~P~Sv~lW~kA~dLE--~~~~~K~RVlRKALe~iP~sv~LWKaAVelE------------~~~darilL~rA 402 (913)
T KOG0495|consen 337 VVANAVRFLPTSVRLWLKAADLE--SDTKNKKRVLRKALEHIPRSVRLWKAAVELE------------EPEDARILLERA 402 (913)
T ss_pred HHHHHHHhCCCChhhhhhHHhhh--hHHHHHHHHHHHHHHhCCchHHHHHHHHhcc------------ChHHHHHHHHHH
Confidence 34556677777777777777765 3344445678888888888888888776664 224488889999
Q ss_pred HHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCC---
Q 007648 95 LVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPS--- 171 (594)
Q Consensus 95 l~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~--- 171 (594)
++.+|.|.++|..|+..+. ++.|+.++++|-+..|.. +.+|...+.+++..|+. +...++..+++..-..
T Consensus 403 veccp~s~dLwlAlarLet----YenAkkvLNkaRe~iptd--~~IWitaa~LEE~ngn~-~mv~kii~rgl~~L~~ngv 475 (913)
T KOG0495|consen 403 VECCPQSMDLWLALARLET----YENAKKVLNKAREIIPTD--REIWITAAKLEEANGNV-DMVEKIIDRGLSELQANGV 475 (913)
T ss_pred HHhccchHHHHHHHHHHHH----HHHHHHHHHHHHhhCCCC--hhHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHhhcce
Confidence 9999999999988887654 788888888888888876 78888888888888876 6666666555432110
Q ss_pred ------------------------------------CHH---HH---HHHHHhcccHHHHHHHHHHhhc-Cccccccccc
Q 007648 172 ------------------------------------HIE---DF---IEFLVKSKLWQEAAERLASVLN-DDQFYSIKGK 208 (594)
Q Consensus 172 ------------------------------------~~~---~~---~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~ 208 (594)
+.+ .+ ++...+.+.++-|+.+|..+++ +|.
T Consensus 476 ~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~------- 548 (913)
T KOG0495|consen 476 EINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC------- 548 (913)
T ss_pred eecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc-------
Confidence 000 11 1234445566667777777773 222
Q ss_pred chHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHH
Q 007648 209 TKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVI 288 (594)
Q Consensus 209 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l 288 (594)
.-.+|.....+++.|+.. ...++++++++..+|.. +.+|+.++..+...|++..|+.++.++++..|.+. .+
T Consensus 549 -k~slWlra~~~ek~hgt~---Esl~Allqkav~~~pka-e~lwlM~ake~w~agdv~~ar~il~~af~~~pnse---ei 620 (913)
T KOG0495|consen 549 -KKSLWLRAAMFEKSHGTR---ESLEALLQKAVEQCPKA-EILWLMYAKEKWKAGDVPAARVILDQAFEANPNSE---EI 620 (913)
T ss_pred -hhHHHHHHHHHHHhcCcH---HHHHHHHHHHHHhCCcc-hhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcH---HH
Confidence 346899999999998853 24678999999999975 78999999999999999999999999999999876 57
Q ss_pred HHHHHHHHHHHH--HHH---hcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHH
Q 007648 289 FDSYSQFEEIMV--SAK---MAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLE 363 (594)
Q Consensus 289 ~~~~~~~e~~~~--~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (594)
|.+.+.++-... +.+ +.+.....+. .+++.++..|+...+ .++.++..++
T Consensus 621 wlaavKle~en~e~eraR~llakar~~sgT----------------eRv~mKs~~~er~ld---------~~eeA~rllE 675 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSISGT----------------ERVWMKSANLERYLD---------NVEEALRLLE 675 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhccCCc----------------chhhHHHhHHHHHhh---------hHHHHHHHHH
Confidence 777766653211 111 1111111111 123444455554322 2444555666
Q ss_pred hhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHH
Q 007648 364 HLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIAN 441 (594)
Q Consensus 364 ~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 441 (594)
+ +++..|+...+|+.+|+++. ++++.|+..|..+++.||. .+.+|+.++.++++.|++-+
T Consensus 676 e------------~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~------~ipLWllLakleEk~~~~~r 737 (913)
T KOG0495|consen 676 E------------ALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN------SIPLWLLLAKLEEKDGQLVR 737 (913)
T ss_pred H------------HHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC------CchHHHHHHHHHHHhcchhh
Confidence 6 68999999999999999996 7899999999999999876 68999999999999999999
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhH--h-hhhhccC-------ChhhhHHh
Q 007648 442 ARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEV--R-RRVAADG-------NEPVQMKL 511 (594)
Q Consensus 442 A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~-~~~~~~~-------~~~~~~~~ 511 (594)
||.+++++...+|+++ .+|+..++++++.|+.+.|..+..+|++.+|+.. + ..+.+.+ ..+...++
T Consensus 738 AR~ildrarlkNPk~~----~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc 813 (913)
T KOG0495|consen 738 ARSILDRARLKNPKNA----LLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC 813 (913)
T ss_pred HHHHHHHHHhcCCCcc----hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc
Confidence 9999999999999999 9999999999999999999999999999999753 3 2232111 22345567
Q ss_pred hccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhh-------hhcccCcccchhh
Q 007648 512 HKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVF-------LLHVPFTFSGLCM 581 (594)
Q Consensus 512 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a-------~~~~~~~~~~~~~ 581 (594)
-.|+++...-+.+.....++++|+++|+||++.+|+++++|.++-.|+.++|.-++- ..+-|--++-||-
T Consensus 814 e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~a 890 (913)
T KOG0495|consen 814 EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQA 890 (913)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHH
Confidence 789999999999999999999999999999999999999999999999999943332 3555666666654
No 5
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=9.6e-35 Score=289.29 Aligned_cols=477 Identities=16% Similarity=0.185 Sum_probs=354.3
Q ss_pred chHhHHHHhhCCCCHHHHHHHHHHHH-cCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc--------cCCCC----
Q 007648 13 DLLYEEELLRNPFSLKLWWRYLVAKR-EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIV--------KNLPI---- 79 (594)
Q Consensus 13 ~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~--------~~~~~---- 79 (594)
+..+-....-||.+..+|+.-++.+. .|.+..|+.+..++++.+|.|.++|+..+...-... -+++.
T Consensus 271 R~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~Avr~~P~Sv~ 350 (913)
T KOG0495|consen 271 RLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVVANAVRFLPTSVR 350 (913)
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHHHHHHHhCCCChh
Confidence 44555556679999999999999775 899999999999999999999999998876531000 00000
Q ss_pred -------CchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcC
Q 007648 80 -------THPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEG 152 (594)
Q Consensus 80 -------~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~ 152 (594)
-..+...-.+++.+||+..|+|+.+|-...++ .+.+.||.++.||++.+|.+ .++|.+|+.++.
T Consensus 351 lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVel----E~~~darilL~rAveccp~s--~dLwlAlarLet--- 421 (913)
T KOG0495|consen 351 LWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVEL----EEPEDARILLERAVECCPQS--MDLWLALARLET--- 421 (913)
T ss_pred hhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhc----cChHHHHHHHHHHHHhccch--HHHHHHHHHHHH---
Confidence 01222333445555555555555555444333 24566888888888888875 788888888774
Q ss_pred CchHHHHHHHHHHHhhCCCCHHHHH---HHHHhcccHHHHHHHHHHhhcCcccccccc-cchHHHHHHHHHHHhhccccc
Q 007648 153 IPIETSLRVYRRYLKYDPSHIEDFI---EFLVKSKLWQEAAERLASVLNDDQFYSIKG-KTKHRLWLELCDLLTTHATEI 228 (594)
Q Consensus 153 ~~~~~a~~~~~~~l~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~~~~~~~~~ 228 (594)
+ +.|.++++++-+..|.+.+.++ .+....|+.+...++..+.+.. +...| ......|..-+.-++..+..
T Consensus 422 -Y-enAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~---L~~ngv~i~rdqWl~eAe~~e~agsv- 495 (913)
T KOG0495|consen 422 -Y-ENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSE---LQANGVEINRDQWLKEAEACEDAGSV- 495 (913)
T ss_pred -H-HHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHH---HhhcceeecHHHHHHHHHHHhhcCCh-
Confidence 5 7888888888888888887554 5677788888888888777620 01111 12346676554444433322
Q ss_pred ccCcHHHHHHHHHhhc--cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHH-----
Q 007648 229 SGLNVDAIIRGGIRKF--TDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVS----- 301 (594)
Q Consensus 229 ~~~~~~~~~~~~~~~~--p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~----- 301 (594)
.+++++++..+..- .++....|+.-++.+.+.+-++-|+.+|..+|+.+|... .+|.....|++.+..
T Consensus 496 --~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~---slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 496 --ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKK---SLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred --hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchh---HHHHHHHHHHHhcCcHHHHH
Confidence 34667777655432 234467899999999999999999999999999999887 799999999987532
Q ss_pred ----HHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhh
Q 007648 302 ----AKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVL 377 (594)
Q Consensus 302 ----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (594)
.++..-++. ..+.-++....|. .+++..++..+.. +
T Consensus 571 Allqkav~~~pka--------------------------e~lwlM~ake~w~--agdv~~ar~il~~------------a 610 (913)
T KOG0495|consen 571 ALLQKAVEQCPKA--------------------------EILWLMYAKEKWK--AGDVPAARVILDQ------------A 610 (913)
T ss_pred HHHHHHHHhCCcc--------------------------hhHHHHHHHHHHh--cCCcHHHHHHHHH------------H
Confidence 112222221 1123333344454 3577788888877 5
Q ss_pred hccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 007648 378 LRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK 455 (594)
Q Consensus 378 l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~ 455 (594)
...+|++.++|+..+.++. .++++|+.+|.+|-.. .| ...+|+.++.+++-+++.++|+.++++||+..|+
T Consensus 611 f~~~pnseeiwlaavKle~en~e~eraR~llakar~~-sg------TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~ 683 (913)
T KOG0495|consen 611 FEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI-SG------TERVWMKSANLERYLDNVEEALRLLEEALKSFPD 683 (913)
T ss_pred HHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-CC------cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 7889999999999888874 5799999999999874 44 5799999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHH
Q 007648 456 TVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTR 535 (594)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 535 (594)
.+ .+|+.+|+++.+.++++.||..|..+++.+|+ ++.+|+.++.++.+.|+.-.||
T Consensus 684 f~----Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~--------------------~ipLWllLakleEk~~~~~rAR 739 (913)
T KOG0495|consen 684 FH----KLWLMLGQIEEQMENIEMAREAYLQGTKKCPN--------------------SIPLWLLLAKLEEKDGQLVRAR 739 (913)
T ss_pred hH----HHHHHHhHHHHHHHHHHHHHHHHHhccccCCC--------------------CchHHHHHHHHHHHhcchhhHH
Confidence 99 99999999999999999999999999999995 6788999999999988899999
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHHhchhhhh-------hhcccCcccchh
Q 007648 536 AVYERILDLRIATPQIIINYALLLEVWTLLHVF-------LLHVPFTFSGLC 580 (594)
Q Consensus 536 ~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a-------~~~~~~~~~~~~ 580 (594)
.+++|+.-.||+++..|....+++.+.|..++| |+.-|-.+--|+
T Consensus 740 ~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWa 791 (913)
T KOG0495|consen 740 SILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWA 791 (913)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHH
Confidence 999999999999999999999998888877765 355555554444
No 6
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=5.1e-32 Score=268.35 Aligned_cols=393 Identities=14% Similarity=0.195 Sum_probs=330.8
Q ss_pred HHHHhhCCCCHHHHHHHHHHHH-cCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHH
Q 007648 17 EEELLRNPFSLKLWWRYLVAKR-EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERAL 95 (594)
Q Consensus 17 e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 95 (594)
+.+++++|.-.+.+..++...+ .|.++.|...|+.+++..|..++.|...+... .+.|+.+.|...|..||
T Consensus 106 ~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al--------~~~~~~~~a~~~~~~al 177 (966)
T KOG4626|consen 106 LLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAAL--------VTQGDLELAVQCFFEAL 177 (966)
T ss_pred hhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHH--------HhcCCCcccHHHHHHHH
Confidence 4567889999999999999775 79999999999999999999999999888776 45688899999999999
Q ss_pred HhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHH
Q 007648 96 VTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIED 175 (594)
Q Consensus 96 ~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~ 175 (594)
+++|+..-+....+..+..+|...+|...|.+|++..|.. .-.|..++-.....|+. -.|+..|+++++++|...++
T Consensus 178 qlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~f--AiawsnLg~~f~~~Gei-~~aiq~y~eAvkldP~f~dA 254 (966)
T KOG4626|consen 178 QLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCF--AIAWSNLGCVFNAQGEI-WLAIQHYEEAVKLDPNFLDA 254 (966)
T ss_pred hcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCce--eeeehhcchHHhhcchH-HHHHHHHHHhhcCCCcchHH
Confidence 9999998899999999999999999999999999999975 57788888888888887 89999999999999999887
Q ss_pred HH---HHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHH
Q 007648 176 FI---EFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLW 252 (594)
Q Consensus 176 ~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 252 (594)
|+ ..|...+.+++|...|.++++ ..|.. ..++
T Consensus 255 YiNLGnV~ke~~~~d~Avs~Y~rAl~--------------------------------------------lrpn~-A~a~ 289 (966)
T KOG4626|consen 255 YINLGNVYKEARIFDRAVSCYLRALN--------------------------------------------LRPNH-AVAH 289 (966)
T ss_pred HhhHHHHHHHHhcchHHHHHHHHHHh--------------------------------------------cCCcc-hhhc
Confidence 65 457788888999888888773 11111 3567
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhh
Q 007648 253 TSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDV 332 (594)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (594)
-++|-+|.++|+.+-|+..|+++|...|..++ +|-.+-.. ++.
T Consensus 290 gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~------Ay~NlanA-----Lkd-------------------------- 332 (966)
T KOG4626|consen 290 GNLACIYYEQGLLDLAIDTYKRALELQPNFPD------AYNNLANA-----LKD-------------------------- 332 (966)
T ss_pred cceEEEEeccccHHHHHHHHHHHHhcCCCchH------HHhHHHHH-----HHh--------------------------
Confidence 77788888999999999999999999888763 22222221 111
Q ss_pred hhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHH
Q 007648 333 NLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAV 410 (594)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai 410 (594)
.+++..+...|.+ +|+..|+.+++...++.++. |.++.|..+|++|+
T Consensus 333 -------------------~G~V~ea~~cYnk------------aL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al 381 (966)
T KOG4626|consen 333 -------------------KGSVTEAVDCYNK------------ALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKAL 381 (966)
T ss_pred -------------------ccchHHHHHHHHH------------HHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 1234445566777 68999999999999999985 88999999999999
Q ss_pred hccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 007648 411 RTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE 490 (594)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 490 (594)
...|. ++.+..++|.++.++|++++|+..|+.||++.|.-. +.+...|..+..+|+.+.|.+.|++|+..
T Consensus 382 ~v~p~------~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fA----da~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 382 EVFPE------FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFA----DALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred hhChh------hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHH----HHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 96443 678899999999999999999999999999999998 77778888888899999999999999999
Q ss_pred CchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhc
Q 007648 491 PSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWT 563 (594)
Q Consensus 491 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g 563 (594)
+|. -...+..++.++.--|+..+|+..|+.||+++|+.|+++-|+.+.+.--.
T Consensus 452 nPt--------------------~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vc 504 (966)
T KOG4626|consen 452 NPT--------------------FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVC 504 (966)
T ss_pred CcH--------------------HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHh
Confidence 994 23667888889989999999999999999999999999999999887543
No 7
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.98 E-value=6.5e-30 Score=253.54 Aligned_cols=414 Identities=11% Similarity=0.093 Sum_probs=339.1
Q ss_pred HcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccc
Q 007648 38 REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKF 117 (594)
Q Consensus 38 ~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~ 117 (594)
+.|++..|.+.+...-+.+|...+-....-. ...+..+++.....-..|++..|...+.+..+++++...|+
T Consensus 60 q~gd~~~a~~h~nmv~~~d~t~~~~llll~a--------i~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 60 QGGDYKQAEKHCNMVGQEDPTNTERLLLLSA--------IFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred hccCHHHHHHHHhHhhccCCCcccceeeehh--------hhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 3699999999999988889876543321111 11344566777777788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHH---HHHHHHHhcccHHHHHHHHH
Q 007648 118 ITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIE---DFIEFLVKSKLWQEAAERLA 194 (594)
Q Consensus 118 ~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~---~~~~~~~~~~~~~~a~~~~~ 194 (594)
.+.|...|+.++++.|.. .+.|..++..+...|+. +.|...|..+++++|...- .+..++...|+..+|...|.
T Consensus 132 ~~~al~~y~~aiel~p~f--ida~inla~al~~~~~~-~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 132 LQDALALYRAAIELKPKF--IDAYINLAAALVTQGDL-ELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred HHHHHHHHHHHHhcCchh--hHHHhhHHHHHHhcCCC-cccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 999999999999999986 78898888888888888 9999999999999998663 45678888999999999999
Q ss_pred Hhhc-CcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHH
Q 007648 195 SVLN-DDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFE 273 (594)
Q Consensus 195 ~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~ 273 (594)
+++. +|.|.. .|..+.-.....|+- ....+-++++++..|. +.++++++|.+|.+.+.+++|..+|.
T Consensus 209 kAi~~qp~fAi--------awsnLg~~f~~~Gei---~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~ 276 (966)
T KOG4626|consen 209 KAIETQPCFAI--------AWSNLGCVFNAQGEI---WLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYL 276 (966)
T ss_pred HHHhhCCceee--------eehhcchHHhhcchH---HHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHH
Confidence 9994 666632 244443333322211 0122445677777775 57899999999999999999999999
Q ss_pred HHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchh
Q 007648 274 EGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVK 353 (594)
Q Consensus 274 ~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (594)
+|+...|.... .+ +.... + | ...+
T Consensus 277 rAl~lrpn~A~---a~------------------gNla~---------------i---Y-----------------yeqG 300 (966)
T KOG4626|consen 277 RALNLRPNHAV---AH------------------GNLAC---------------I---Y-----------------YEQG 300 (966)
T ss_pred HHHhcCCcchh---hc------------------cceEE---------------E---E-----------------eccc
Confidence 99998887652 11 00000 0 0 1135
Q ss_pred hHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHH
Q 007648 354 DVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAK 431 (594)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~ 431 (594)
+++.++..|++ ++...|+-++++..++..+. |+..+|..+|.+|+..+|. .++...++|+
T Consensus 301 ~ldlAI~~Ykr------------al~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~------hadam~NLgn 362 (966)
T KOG4626|consen 301 LLDLAIDTYKR------------ALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN------HADAMNNLGN 362 (966)
T ss_pred cHHHHHHHHHH------------HHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc------cHHHHHHHHH
Confidence 67788899999 58999999999999999885 8999999999999998654 6899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHh
Q 007648 432 LYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKL 511 (594)
Q Consensus 432 ~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 511 (594)
++.++|.++.|...|++|+...|+.. .....++.++.++|++++|...|+.|+++.|.
T Consensus 363 i~~E~~~~e~A~~ly~~al~v~p~~a----aa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~------------------ 420 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALEVFPEFA----AAHNNLASIYKQQGNLDDAIMCYKEALRIKPT------------------ 420 (966)
T ss_pred HHHHhccchHHHHHHHHHHhhChhhh----hhhhhHHHHHHhcccHHHHHHHHHHHHhcCch------------------
Confidence 99999999999999999999999998 77888899999999999999999999999995
Q ss_pred hccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhhhcc
Q 007648 512 HKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFLLHV 572 (594)
Q Consensus 512 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~~~~ 572 (594)
-.+.+...|..+...|+.+.|.++|+|||+.+|.-+++..|++.++.-.|+..+|+.-|
T Consensus 421 --fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 421 --FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred --HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 23778889999999999999999999999999999999999999999999888887444
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=3.4e-28 Score=279.77 Aligned_cols=470 Identities=14% Similarity=0.074 Sum_probs=352.7
Q ss_pred CCcchHhHHHHhhCCCCHHHHHHHHHHH-HcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHH
Q 007648 10 SEDDLLYEEELLRNPFSLKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLN 88 (594)
Q Consensus 10 ~~~~~~~e~~l~~~P~~~~~w~~~~~~~-~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~ 88 (594)
.++...++..+..+|.+...+..++... ..|++++|..++++.+...|.++..|...+... ...|++++|.
T Consensus 414 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~A~ 485 (899)
T TIGR02917 414 SEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIY--------LGKGDLAKAR 485 (899)
T ss_pred HHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHH--------HhCCCHHHHH
Confidence 3456678889999999888888777744 489999999999999999999999998887765 4568999999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhh
Q 007648 89 NTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKY 168 (594)
Q Consensus 89 ~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~ 168 (594)
..|+++++.+|.++..+..++.++...|+++.|...|++++...|.+ ...|..++.+....|+. ++|...|++++..
T Consensus 486 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~ 562 (899)
T TIGR02917 486 EAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKN--LRAILALAGLYLRTGNE-EEAVAWLEKAAEL 562 (899)
T ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999975 67888888888889999 9999999999999
Q ss_pred CCCCHH---HHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhcc
Q 007648 169 DPSHIE---DFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFT 245 (594)
Q Consensus 169 ~p~~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (594)
+|.+.. .++..+...|++++|...+++++... ......|..+.......++. ..+...+++++...|
T Consensus 563 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~ 632 (899)
T TIGR02917 563 NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-------PDSPEAWLMLGRAQLAAGDL---NKAVSSFKKLLALQP 632 (899)
T ss_pred CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCC
Confidence 998876 34577889999999999999998411 12346787777776655432 234567788888888
Q ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHH--HHHHH---hcCCCCCCccccccccc
Q 007648 246 DEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEI--MVSAK---MAKPDLSVEEEEDDEEH 320 (594)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~--~~~~~---l~~~~~~~~~~~~~~~~ 320 (594)
++ ...|..++..+...|++++|...|+++++..|++.. .+......... ..+.+ ++.+....
T Consensus 633 ~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------- 699 (899)
T TIGR02917 633 DS-ALALLLLADAYAVMKNYAKAITSLKRALELKPDNTE---AQIGLAQLLLAAKRTESAKKIAKSLQKQH--------- 699 (899)
T ss_pred CC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------
Confidence 76 678999999999999999999999999999888653 22222221111 00000 00000000
Q ss_pred CCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CC
Q 007648 321 GSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GN 398 (594)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~ 398 (594)
+.+. .. .......- ...+....++..|++ ++...|++ ..+..++..+. |+
T Consensus 700 ~~~~--~~----~~~~~~~~---------~~~g~~~~A~~~~~~------------~~~~~~~~-~~~~~l~~~~~~~g~ 751 (899)
T TIGR02917 700 PKAA--LG----FELEGDLY---------LRQKDYPAAIQAYRK------------ALKRAPSS-QNAIKLHRALLASGN 751 (899)
T ss_pred cCCh--HH----HHHHHHHH---------HHCCCHHHHHHHHHH------------HHhhCCCc-hHHHHHHHHHHHCCC
Confidence 0000 00 00000000 001234445555555 35556665 45555555543 67
Q ss_pred chhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChH
Q 007648 399 PTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFK 478 (594)
Q Consensus 399 ~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 478 (594)
+++|...+++++...|. ...++..+|.++...|++++|..+|+++++..|+++ .++..++.++...|+ +
T Consensus 752 ~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~~~-~ 820 (899)
T TIGR02917 752 TAEAVKTLEAWLKTHPN------DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNA----VVLNNLAWLYLELKD-P 820 (899)
T ss_pred HHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCc-H
Confidence 77777777777765332 456777777777777777777777777777777777 666666776667777 6
Q ss_pred HHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHH
Q 007648 479 GALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALL 558 (594)
Q Consensus 479 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~ 558 (594)
+|+.++++++...|+ ++.++..++.++...|++++|.++|+++++.+|.++.++.+++.+
T Consensus 821 ~A~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 880 (899)
T TIGR02917 821 RALEYAEKALKLAPN--------------------IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALA 880 (899)
T ss_pred HHHHHHHHHHhhCCC--------------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 677777777777774 668888999999999999999999999999999999999999999
Q ss_pred HHHhchhhhhhhcc
Q 007648 559 LEVWTLLHVFLLHV 572 (594)
Q Consensus 559 ~~~~g~~~~a~~~~ 572 (594)
+.+.|++++|++.+
T Consensus 881 ~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 881 LLATGRKAEARKEL 894 (899)
T ss_pred HHHcCCHHHHHHHH
Confidence 99999999998654
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.8e-27 Score=273.69 Aligned_cols=466 Identities=13% Similarity=0.086 Sum_probs=367.2
Q ss_pred CCcchHhHHHHhhCCCCHHHHHHHHHHH-HcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHH
Q 007648 10 SEDDLLYEEELLRNPFSLKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLN 88 (594)
Q Consensus 10 ~~~~~~~e~~l~~~P~~~~~w~~~~~~~-~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~ 88 (594)
.++...|++.+..+|.+...|..++... ..|+++.|...|+++++..|.....+...+... ...|++++|.
T Consensus 380 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~--------~~~~~~~~A~ 451 (899)
T TIGR02917 380 EKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSY--------LRSGQFDKAL 451 (899)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHH--------HhcCCHHHHH
Confidence 3456778899999999999999988855 489999999999999999999888877666554 4568999999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhh
Q 007648 89 NTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKY 168 (594)
Q Consensus 89 ~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~ 168 (594)
.++++++...|.++..|..++.++...|++++|...|+++++..|.+ ...+..++.+....|+. ++|.+.|++++..
T Consensus 452 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~ 528 (899)
T TIGR02917 452 AAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDF--FPAAANLARIDIQEGNP-DDAIQRFEKVLTI 528 (899)
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHCCCH-HHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999976 67788888888889999 9999999999999
Q ss_pred CCCCHHH---HHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhcc
Q 007648 169 DPSHIED---FIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFT 245 (594)
Q Consensus 169 ~p~~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (594)
.|.+... ++.++...|++++|...|++++... ......+..++......++. ..+...+++++...|
T Consensus 529 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~ 598 (899)
T TIGR02917 529 DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-------PQEIEPALALAQYYLGKGQL---KKALAILNEAADAAP 598 (899)
T ss_pred CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------ccchhHHHHHHHHHHHCCCH---HHHHHHHHHHHHcCC
Confidence 9998863 4567888999999999999997411 11234555555555544432 234567778888777
Q ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHH-------HHHHH--HHHhcCCCCCCccccc
Q 007648 246 DEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQF-------EEIMV--SAKMAKPDLSVEEEED 316 (594)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~-------e~~~~--~~~l~~~~~~~~~~~~ 316 (594)
.+ ...|..++..+...|++++|+..|++++...|.+.. .+...... ++... ..++...+..
T Consensus 599 ~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------ 668 (899)
T TIGR02917 599 DS-PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSAL---ALLLLADAYAVMKNYAKAITSLKRALELKPDN------ 668 (899)
T ss_pred CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------
Confidence 66 689999999999999999999999999999887653 22222211 11111 0111111110
Q ss_pred ccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc
Q 007648 317 DEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE 396 (594)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~ 396 (594)
. ..+......+. ..+....+...++. +....|.+...+..++.++.
T Consensus 669 -------~-----~~~~~l~~~~~----------~~~~~~~A~~~~~~------------~~~~~~~~~~~~~~~~~~~~ 714 (899)
T TIGR02917 669 -------T-----EAQIGLAQLLL----------AAKRTESAKKIAKS------------LQKQHPKAALGFELEGDLYL 714 (899)
T ss_pred -------H-----HHHHHHHHHHH----------HcCCHHHHHHHHHH------------HHhhCcCChHHHHHHHHHHH
Confidence 0 00010000010 12234445555555 35667888888888888763
Q ss_pred --CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhc
Q 007648 397 --GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRH 474 (594)
Q Consensus 397 --~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~ 474 (594)
|++++|...|++++... |+ ...+..++.++...|++++|...++++++..|+++ .++..++.++...
T Consensus 715 ~~g~~~~A~~~~~~~~~~~-~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~ 783 (899)
T TIGR02917 715 RQKDYPAAIQAYRKALKRA-PS------SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDA----VLRTALAELYLAQ 783 (899)
T ss_pred HCCCHHHHHHHHHHHHhhC-CC------chHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHC
Confidence 88999999999999863 32 36778889999999999999999999999999998 8889999998899
Q ss_pred CChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHH
Q 007648 475 KNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIIN 554 (594)
Q Consensus 475 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~ 554 (594)
|++++|..+|+++++..|+ ++.++..++.++...|+ ++|+..+++++...|+++.++..
T Consensus 784 g~~~~A~~~~~~~~~~~p~--------------------~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~ 842 (899)
T TIGR02917 784 KDYDKAIKHYRTVVKKAPD--------------------NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDT 842 (899)
T ss_pred cCHHHHHHHHHHHHHhCCC--------------------CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHH
Confidence 9999999999999999995 56788888999999999 88999999999999999999999
Q ss_pred HHHHHHHhchhhhhhhcc
Q 007648 555 YALLLEVWTLLHVFLLHV 572 (594)
Q Consensus 555 ~~~~~~~~g~~~~a~~~~ 572 (594)
++.++...|++++|++++
T Consensus 843 ~~~~~~~~g~~~~A~~~~ 860 (899)
T TIGR02917 843 LGWLLVEKGEADRALPLL 860 (899)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 999999999999887443
No 10
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.97 E-value=1e-26 Score=231.96 Aligned_cols=495 Identities=18% Similarity=0.289 Sum_probs=298.6
Q ss_pred chHhHHHHhhCCCCHHHHHHHHHHHH---c------CChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchh
Q 007648 13 DLLYEEELLRNPFSLKLWWRYLVAKR---E------APFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPE 83 (594)
Q Consensus 13 ~~~~e~~l~~~P~~~~~w~~~~~~~~---~------~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~ 83 (594)
...|||+++.-|.+.++|..|++... . .-++.....|+|++-.-...+.+|..|+++. +.+++
T Consensus 46 ~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l--------~~Q~~ 117 (835)
T KOG2047|consen 46 NLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFL--------IKQGL 117 (835)
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH--------Hhcch
Confidence 46799999999999999999996443 1 3357888999999987777889999999998 45589
Q ss_pred HHHHHHHHHHHHHhcC--CChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHH--
Q 007648 84 YETLNNTFERALVTMH--KMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSL-- 159 (594)
Q Consensus 84 ~~~A~~~~~~al~~~P--~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~-- 159 (594)
+...+..|++||...| .+..+|-.|..|....+-++.+..+|+|-|+..|.. -..|..++...++. ++|.
T Consensus 118 iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~-----~eeyie~L~~~d~~-~eaa~~ 191 (835)
T KOG2047|consen 118 ITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEA-----REEYIEYLAKSDRL-DEAAQR 191 (835)
T ss_pred HHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHH-----HHHHHHHHHhccch-HHHHHH
Confidence 9999999999999998 677899999999999999999999999999999963 12222222222222 2222
Q ss_pred ------------------------------------------HHHHHHHhhCCCCHH----HHHHHHHhcccHHHHHHHH
Q 007648 160 ------------------------------------------RVYRRYLKYDPSHIE----DFIEFLVKSKLWQEAAERL 193 (594)
Q Consensus 160 ------------------------------------------~~~~~~l~~~p~~~~----~~~~~~~~~~~~~~a~~~~ 193 (594)
.+++..+...|+... .++.+|++.|.+++|+.+|
T Consensus 192 la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvy 271 (835)
T KOG2047|consen 192 LATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVY 271 (835)
T ss_pred HHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 333333333333332 2457899999999999999
Q ss_pred HHhhcC----cccccccccchHHHHHHHHHHHh-----------------------------------------------
Q 007648 194 ASVLND----DQFYSIKGKTKHRLWLELCDLLT----------------------------------------------- 222 (594)
Q Consensus 194 ~~~~~~----~~~~~~~~~~~~~~w~~~~~~~~----------------------------------------------- 222 (594)
+++++. .+|. +++-.|..|++
T Consensus 272 eeai~~v~tvrDFt--------~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLR 343 (835)
T KOG2047|consen 272 EEAIQTVMTVRDFT--------QIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLR 343 (835)
T ss_pred HHHHHhheehhhHH--------HHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHh
Confidence 999841 1221 11111111111
Q ss_pred hcccccc---------cCcHH---HHHHHHHhh-c----cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh-ccccc
Q 007648 223 THATEIS---------GLNVD---AIIRGGIRK-F----TDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTV-VTVRD 284 (594)
Q Consensus 223 ~~~~~~~---------~~~~~---~~~~~~~~~-~----p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 284 (594)
.+|..+. ..+.. ..+.+++.. . ++....+|..+|.+|...|+.+.|+.+|+++++.. +...+
T Consensus 344 Qn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~d 423 (835)
T KOG2047|consen 344 QNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVED 423 (835)
T ss_pred cCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHH
Confidence 1111110 00111 123334432 1 23446899999999999999999999999999863 56667
Q ss_pred hHHHHHHHHHHHHHHHH--HHhcCCCCC---CcccccccccCCcchh--hhHhh--hhhhHHHHHHhhhccccccchhhH
Q 007648 285 FSVIFDSYSQFEEIMVS--AKMAKPDLS---VEEEEDDEEHGSAEDE--DIRLD--VNLSMAEFVKKVLNGFWLHDVKDV 355 (594)
Q Consensus 285 ~~~l~~~~~~~e~~~~~--~~l~~~~~~---~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 355 (594)
++.+|..++..|-.... .+++.++++ +... ........... .++++ ++..+..++..+| .+
T Consensus 424 La~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~-~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g---------tf 493 (835)
T KOG2047|consen 424 LAEVWCAWAEMELRHENFEAALKLMRRATHVPTNP-ELEYYDNSEPVQARLHRSLKIWSMYADLEESLG---------TF 493 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCch-hhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc---------cH
Confidence 88999999988754432 233221111 1000 00011111111 23333 3455555555433 34
Q ss_pred HHHHHHHHhhhhh------------------------chhhhhhhhhccCCCChHHHHHHHHHhc----C-CchhHHHHH
Q 007648 356 DLRLARLEHLMNR------------------------RPELANSVLLRQNPHNVEQWHRRVKIFE----G-NPTKQILTY 406 (594)
Q Consensus 356 ~~~~~~~~~~~~~------------------------~~~~~~~~~l~~~p~~~~~~~~~~~~~~----~-~~~~a~~~y 406 (594)
......|++++.- ++.+..+..|-.-|+-.++|..+..-+. | ..+.|+.+|
T Consensus 494 estk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 4444555553311 1111122234444444555554433321 1 355555555
Q ss_pred HHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CCChhhHHHHHHHHHHHHHhcCChHHHHHHHH
Q 007648 407 TEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVN-YKTVDHLASIWCEWAEMELRHKNFKGALELMR 485 (594)
Q Consensus 407 ~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 485 (594)
++|++.|||.. .-.+++.||+++++.|-..+|+++|++|.... +.+- .++|..|+.--...-+....|.+|+
T Consensus 574 EqaL~~Cpp~~----aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~---l~myni~I~kaae~yGv~~TR~iYe 646 (835)
T KOG2047|consen 574 EQALDGCPPEH----AKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQR---LDMYNIYIKKAAEIYGVPRTREIYE 646 (835)
T ss_pred HHHHhcCCHHH----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHH---HHHHHHHHHHHHHHhCCcccHHHHH
Confidence 55555555432 12445555555555555555555555554422 2111 1222222221111223444555555
Q ss_pred HHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhc-cCC-chHHHHHHHHHHHHhc
Q 007648 486 RATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL-RIA-TPQIIINYALLLEVWT 563 (594)
Q Consensus 486 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~P~-~~~~~~~~~~~~~~~g 563 (594)
+|++.-|+. +.....+.|+++|.++|..+.||.+|..+-+. +|. +++.|..|-.|+.++|
T Consensus 647 kaIe~Lp~~------------------~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHG 708 (835)
T KOG2047|consen 647 KAIESLPDS------------------KAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHG 708 (835)
T ss_pred HHHHhCChH------------------HHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcC
Confidence 555555531 13467899999999999999999999999995 454 6789999999999999
Q ss_pred h
Q 007648 564 L 564 (594)
Q Consensus 564 ~ 564 (594)
+
T Consensus 709 n 709 (835)
T KOG2047|consen 709 N 709 (835)
T ss_pred C
Confidence 6
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=4.7e-25 Score=256.69 Aligned_cols=501 Identities=12% Similarity=0.046 Sum_probs=318.0
Q ss_pred cchHhHHHHhhCCCCHHHHHHHHHHHH-cCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc--------cCCCCCch
Q 007648 12 DDLLYEEELLRNPFSLKLWWRYLVAKR-EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIV--------KNLPITHP 82 (594)
Q Consensus 12 ~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~--------~~~~~~~~ 82 (594)
....+++.+..+|.|.+.+...++... .|+.+.|...++++++..|.++..|........... .......|
T Consensus 47 a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g 126 (1157)
T PRK11447 47 VRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTG 126 (1157)
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 466788999999999999999999664 899999999999999999999998864433221100 00114568
Q ss_pred hHHHHHHHHHHHHHhcCCChHHHHHHHHHH-HhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHH
Q 007648 83 EYETLNNTFERALVTMHKMPRIWIMYLETL-TSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRV 161 (594)
Q Consensus 83 ~~~~A~~~~~~al~~~P~~~~lw~~y~~~~-~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~ 161 (594)
++++|...|++++..+|.++.+-..|.... ...++.++|+..|+++++..|.+ ..++..++.+....|+. ++|+..
T Consensus 127 ~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~--~~~~~~LA~ll~~~g~~-~eAl~~ 203 (1157)
T PRK11447 127 RTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGN--TGLRNTLALLLFSSGRR-DEGFAV 203 (1157)
T ss_pred CHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHccCCH-HHHHHH
Confidence 999999999999999998876544443333 34588999999999999999986 78888899998888998 999999
Q ss_pred HHHHHhhCCCCHH---HHHHHHHhcc--------------------cHHHHHHHHHHhhc---CcccccccccchHHHHH
Q 007648 162 YRRYLKYDPSHIE---DFIEFLVKSK--------------------LWQEAAERLASVLN---DDQFYSIKGKTKHRLWL 215 (594)
Q Consensus 162 ~~~~l~~~p~~~~---~~~~~~~~~~--------------------~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~w~ 215 (594)
+++++...+.... .+.+.+...+ ....+...+.+... +|.+. . .
T Consensus 204 l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~---------~-~ 273 (1157)
T PRK11447 204 LEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR---------A-R 273 (1157)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH---------H-H
Confidence 9998775443321 1111111111 12333333333221 11110 0 0
Q ss_pred HHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchH---------
Q 007648 216 ELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFS--------- 286 (594)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--------- 286 (594)
.........++. ..+...+++++...|++ ..++..+|..+.+.|++++|+..|+++++..|+.....
T Consensus 274 ~~G~~~~~~g~~---~~A~~~l~~aL~~~P~~-~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 274 AQGLAAVDSGQG---GKAIPELQQAVRANPKD-SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHHHCCCH---HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 011111122211 23456788888888876 78999999999999999999999999999888754210
Q ss_pred HHHHHH----HHHHHHHHHH-------HhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhH
Q 007648 287 VIFDSY----SQFEEIMVSA-------KMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDV 355 (594)
Q Consensus 287 ~l~~~~----~~~e~~~~~~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (594)
..|... ..+.....+. ++...+. +.. . +.. +..+. ...++.
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-------------~~~-a----~~~-Lg~~~---------~~~g~~ 401 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-------------DSY-A----VLG-LGDVA---------MARKDY 401 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------------CHH-H----HHH-HHHHH---------HHCCCH
Confidence 111111 1111111111 1111111 000 0 000 00000 012345
Q ss_pred HHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc-CCchhHHHHHHHHHhccCCCcc----cCCchHHHHHHH
Q 007648 356 DLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE-GNPTKQILTYTEAVRTVDPMKA----VGKPHTLWVAFA 430 (594)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~-~~~~~a~~~y~~Ai~~~~~~~~----~~~~~~~~~~~a 430 (594)
..++..|++ +++.+|++..++..++.++. ++.++|...+++.... .+... .......+...|
T Consensus 402 ~eA~~~y~~------------aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~-~~~~~~~~~~~l~~~~~~~~a 468 (1157)
T PRK11447 402 AAAERYYQQ------------ALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSAS-QRRSIDDIERSLQNDRLAQQA 468 (1157)
T ss_pred HHHHHHHHH------------HHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HHHHHHHHHHHhhhhHHHHHH
Confidence 556667777 47778888888877777653 4566666665542211 00000 000123455666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhH---hhh---hh-c--
Q 007648 431 KLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEV---RRR---VA-A-- 501 (594)
Q Consensus 431 ~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~---~~-~-- 501 (594)
..+...|++++|+..|+++++.+|+++ .+++.++.++.+.|++++|+..++++++..|++. +.. +. .
T Consensus 469 ~~~~~~g~~~eA~~~~~~Al~~~P~~~----~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~ 544 (1157)
T PRK11447 469 EALENQGKWAQAAELQRQRLALDPGSV----WLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDR 544 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCC
Confidence 666677777777777777777777776 6667777777777777777777777777666432 100 00 0
Q ss_pred -----------------------------------------cCChhhhHHh----hccHhhHHHHHHHHHHhCChHHHHH
Q 007648 502 -----------------------------------------DGNEPVQMKL----HKSLRLWTFYVDLEESLGNLESTRA 536 (594)
Q Consensus 502 -----------------------------------------~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~ 536 (594)
.+..+....+ ..++.++..+++++.+.|++++|+.
T Consensus 545 ~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~ 624 (1157)
T PRK11447 545 DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARA 624 (1157)
T ss_pred HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 0000000111 1366788899999999999999999
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHHhchhhhhhhcccC
Q 007648 537 VYERILDLRIATPQIIINYALLLEVWTLLHVFLLHVPF 574 (594)
Q Consensus 537 ~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 574 (594)
.|+++++.+|+++.++.+++.++...|++++|+..+..
T Consensus 625 ~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 625 AYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999865543
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=3.3e-25 Score=257.99 Aligned_cols=477 Identities=12% Similarity=0.062 Sum_probs=315.0
Q ss_pred CcchHhHHHHhhCCCCHHHHHHHHHHHH-cCChhHHHHHHHHHHHhCCCC---hHHHHHHHH-----------------H
Q 007648 11 EDDLLYEEELLRNPFSLKLWWRYLVAKR-EAPFKKRFVIYERALKALPGS---YKLWHAYLI-----------------E 69 (594)
Q Consensus 11 ~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~s---~~lW~~~~~-----------------~ 69 (594)
++...+++.+..+|.+...+..++.... .|++++|...++++++..+.. ..+|...+. .
T Consensus 165 ~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~ 244 (1157)
T PRK11447 165 EAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQV 244 (1157)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHH
Confidence 4567888899999999999999998664 789999999999987643321 233422211 0
Q ss_pred H---------HHhc-----------------cCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHH
Q 007648 70 R---------LSIV-----------------KNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARR 123 (594)
Q Consensus 70 ~---------~~~~-----------------~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~ 123 (594)
. ...+ .......|++++|+..|+++++.+|+++.+|..++.++.++|++++|+.
T Consensus 245 ~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~ 324 (1157)
T PRK11447 245 FSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVA 324 (1157)
T ss_pred CCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 0 0000 0011346889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHH------------HHHHHHHcCCchHHHHHHHHHHHhhCCCCHHH---HHHHHHhcccHHH
Q 007648 124 TFDRALCALPVTQHDRIWEI------------YLRFVEQEGIPIETSLRVYRRYLKYDPSHIED---FIEFLVKSKLWQE 188 (594)
Q Consensus 124 ~~~ral~~~p~~~~~~~w~~------------~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~---~~~~~~~~~~~~~ 188 (594)
.|+++++..|.+.....|.. .+......|++ ++|+..|++++..+|++... ++.++...|++++
T Consensus 325 ~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~-~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~e 403 (1157)
T PRK11447 325 QFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNL-AQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAA 403 (1157)
T ss_pred HHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 99999999997532223322 13344567888 99999999999999998863 4577899999999
Q ss_pred HHHHHHHhhc-CcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccc--------hhHHHHHHHHHHH
Q 007648 189 AAERLASVLN-DDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTD--------EVGRLWTSLADYY 259 (594)
Q Consensus 189 a~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--------~~~~~~~~la~~~ 259 (594)
|++.|++++. +|.. ...+..+..+...... ..+...+++.....+. -....+...|..+
T Consensus 404 A~~~y~~aL~~~p~~--------~~a~~~L~~l~~~~~~----~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~ 471 (1157)
T PRK11447 404 AERYYQQALRMDPGN--------TNAVRGLANLYRQQSP----EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEAL 471 (1157)
T ss_pred HHHHHHHHHHhCCCC--------HHHHHHHHHHHHhcCH----HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999999994 3332 2334333333221100 0111122111000000 0023466678888
Q ss_pred HHhccHHHHHHHHHHHHhhhccccchHHHHHHHH-----HHHHHHHH--HHhcCCCCCCcccccccccCCcchhhhHhhh
Q 007648 260 IRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYS-----QFEEIMVS--AKMAKPDLSVEEEEDDEEHGSAEDEDIRLDV 332 (594)
Q Consensus 260 ~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~-----~~e~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (594)
...|++++|++.|+++++..|++... .+..+.+ ++++.... .+++..+.. . ..+
T Consensus 472 ~~~g~~~eA~~~~~~Al~~~P~~~~~-~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~-------------~-~~~---- 532 (1157)
T PRK11447 472 ENQGKWAQAAELQRQRLALDPGSVWL-TYRLAQDLRQAGQRSQADALMRRLAQQKPND-------------P-EQV---- 532 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------------H-HHH----
Confidence 88888888888888888888876521 1111111 11111100 011100100 0 000
Q ss_pred hhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCC--------ChHHHHHHHHHh--cCCchhH
Q 007648 333 NLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPH--------NVEQWHRRVKIF--EGNPTKQ 402 (594)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~--------~~~~~~~~~~~~--~~~~~~a 402 (594)
+ ....+.. ..+....++..++++... ..++. ..+..+..+..+ .|+.++|
T Consensus 533 ~-a~al~l~---------~~~~~~~Al~~l~~l~~~----------~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 533 Y-AYGLYLS---------GSDRDRAALAHLNTLPRA----------QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred H-HHHHHHH---------hCCCHHHHHHHHHhCCch----------hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 0 0000000 011223344444442100 00000 001122333333 3778888
Q ss_pred HHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHH
Q 007648 403 ILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALE 482 (594)
Q Consensus 403 ~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 482 (594)
+.+++. .|. .+.+++.+|.++.+.|++++|+..|+++++.+|+++ .+++.++.++...|++++|++
T Consensus 593 ~~~l~~-----~p~-----~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~----~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 593 EALLRQ-----QPP-----STRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNA----DARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HHHHHh-----CCC-----CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHH
Confidence 877762 232 467889999999999999999999999999999999 899999999999999999999
Q ss_pred HHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCch------HHHHHHH
Q 007648 483 LMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP------QIIINYA 556 (594)
Q Consensus 483 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~------~~~~~~~ 556 (594)
.++++++..|+ ++.++..++.++...|++++|.++|++++...|+++ .++..++
T Consensus 659 ~l~~ll~~~p~--------------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a 718 (1157)
T PRK11447 659 QLAKLPATAND--------------------SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAA 718 (1157)
T ss_pred HHHHHhccCCC--------------------ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHH
Confidence 99999999885 557778888899999999999999999999877654 4667789
Q ss_pred HHHHHhchhhhhhhccc
Q 007648 557 LLLEVWTLLHVFLLHVP 573 (594)
Q Consensus 557 ~~~~~~g~~~~a~~~~~ 573 (594)
.++...|++++|+..|.
T Consensus 719 ~~~~~~G~~~~A~~~y~ 735 (1157)
T PRK11447 719 RFEAQTGQPQQALETYK 735 (1157)
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 99999999999986654
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.96 E-value=1.2e-24 Score=238.25 Aligned_cols=418 Identities=11% Similarity=0.066 Sum_probs=286.5
Q ss_pred HcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccc
Q 007648 38 REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKF 117 (594)
Q Consensus 38 ~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~ 117 (594)
..|++++|...|+++++..|. +..|...+... ...|++++|+..|++|++.+|+++.+|...+..+..+|+
T Consensus 139 ~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~--------~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 139 RNKDFNKAIKLYSKAIECKPD-PVYYSNRAACH--------NALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH--------HHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 479999999999999999995 66676665544 345899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHH--HH-HHHHHhcccHHHHHHHHH
Q 007648 118 ITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIE--DF-IEFLVKSKLWQEAAERLA 194 (594)
Q Consensus 118 ~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~--~~-~~~~~~~~~~~~a~~~~~ 194 (594)
+++|...|..+....+.+. ...-..+.... . ..+.......++..|.+.. .+ ..++.. .....+...+.
T Consensus 210 ~~eA~~~~~~~~~~~~~~~-~~~~~~~~~~l-----~-~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 281 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRN-EQSAQAVERLL-----K-KFAESKAKEILETKPENLPSVTFVGNYLQS-FRPKPRPAGLE 281 (615)
T ss_pred HHHHHHHHHHHHHhCCCcc-HHHHHHHHHHH-----H-HHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-ccCCcchhhhh
Confidence 9999999988877655431 22111111111 1 3344555556666666432 11 111110 00001111111
Q ss_pred Hhhc-CcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhh---ccchhHHHHHHHHHHHHHhccHHHHHH
Q 007648 195 SVLN-DDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRK---FTDEVGRLWTSLADYYIRRELFEKARD 270 (594)
Q Consensus 195 ~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~~~~~~~~~la~~~~~~g~~~~A~~ 270 (594)
.... ++.. +............. ..... ...+...+++++.. .|. ...+|..+|.++...|++++|+.
T Consensus 282 ~~~~~~~~~----~~~~~~l~~~~~e~--~~~~~--y~~A~~~~~~al~~~~~~~~-~a~a~~~lg~~~~~~g~~~eA~~ 352 (615)
T TIGR00990 282 DSNELDEET----GNGQLQLGLKSPES--KADES--YEEAARAFEKALDLGKLGEK-EAIALNLRGTFKCLKGKHLEALA 352 (615)
T ss_pred ccccccccc----ccchHHHHHHHHHh--hhhhh--HHHHHHHHHHHHhcCCCChh-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 1110 0000 00000000000000 00000 01123445555543 233 25689999999999999999999
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhcccccc
Q 007648 271 IFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLH 350 (594)
Q Consensus 271 ~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (594)
.|++++...|.... .|.........
T Consensus 353 ~~~kal~l~P~~~~---~~~~la~~~~~---------------------------------------------------- 377 (615)
T TIGR00990 353 DLSKSIELDPRVTQ---SYIKRASMNLE---------------------------------------------------- 377 (615)
T ss_pred HHHHHHHcCCCcHH---HHHHHHHHHHH----------------------------------------------------
Confidence 99999999887652 22211111100
Q ss_pred chhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHH
Q 007648 351 DVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVA 428 (594)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~ 428 (594)
.++...+...|++ ++..+|+++.+|..+|.++. |++++|+..|++++.. .|+ ...+|+.
T Consensus 378 -~g~~~eA~~~~~~------------al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-~P~-----~~~~~~~ 438 (615)
T TIGR00990 378 -LGDPDKAEEDFDK------------ALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-DPD-----FIFSHIQ 438 (615)
T ss_pred -CCCHHHHHHHHHH------------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-Ccc-----CHHHHHH
Confidence 1123345566777 47889999999999998874 8999999999999996 443 5788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhh
Q 007648 429 FAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQ 508 (594)
Q Consensus 429 ~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 508 (594)
+|.++.+.|++++|+..|+++++..|+++ .+|..+|.++...|++++|++.|++|+++.|+..
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~P~~~----~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~------------- 501 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNFPEAP----DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK------------- 501 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc-------------
Confidence 99999999999999999999999999999 8999999999999999999999999999998410
Q ss_pred HHhhccH-hhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhhhccc
Q 007648 509 MKLHKSL-RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFLLHVP 573 (594)
Q Consensus 509 ~~~~~~~-~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~~~~~ 573 (594)
..+.+. .++...+.++...|++++|.+.++++++++|+++.++..+|+++.+.|++++|+..+.
T Consensus 502 -~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 502 -PMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFE 566 (615)
T ss_pred -cccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 000011 1222223334457999999999999999999999999999999999999999985543
No 14
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.95 E-value=1.3e-23 Score=206.58 Aligned_cols=427 Identities=18% Similarity=0.285 Sum_probs=289.1
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHH
Q 007648 17 EEELLRNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALV 96 (594)
Q Consensus 17 e~~l~~~P~~~~~w~~~~~~~~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 96 (594)
++.+..||+|.+.|..+|+...+..++++|..||+.+..+|.++..|..|++.+ ...++++....+|.|+|.
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~E--------l~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERE--------LASKDFESVEKLFSRCLV 81 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHH--------HHhhhHHHHHHHHHHHHH
Confidence 788888999999999999988767889999999999999999999999999888 344777777777777776
Q ss_pred hcCCChHHHHHHHHHHHhcc-cH----HHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHH---cCC-----chHHHHHHH
Q 007648 97 TMHKMPRIWIMYLETLTSQK-FI----TKARRTFDRALCALPVT-QHDRIWEIYLRFVEQ---EGI-----PIETSLRVY 162 (594)
Q Consensus 97 ~~P~~~~lw~~y~~~~~~~~-~~----~~A~~~~~ral~~~p~~-~~~~~w~~~~~~~~~---~~~-----~~~~a~~~~ 162 (594)
.- -+.++|..|+....+.+ +. ....+.|+=++..+.-+ .+..+|..|+.|... .|. .++..+++|
T Consensus 82 kv-LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriY 160 (656)
T KOG1914|consen 82 KV-LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIY 160 (656)
T ss_pred HH-hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHH
Confidence 43 33667777766655432 11 22333444444444311 124566666665432 111 125566666
Q ss_pred HHHHhhCCCCHH----HHHHH-------------HHhcccHHHHHHHHHHhhc--------Ccccccccc----cchHHH
Q 007648 163 RRYLKYDPSHIE----DFIEF-------------LVKSKLWQEAAERLASVLN--------DDQFYSIKG----KTKHRL 213 (594)
Q Consensus 163 ~~~l~~~p~~~~----~~~~~-------------~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~----~~~~~~ 213 (594)
++++...=.+.+ .|.++ ......|..|+..++++.+ +|. +++.+ ..+.++
T Consensus 161 qral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-vp~~~T~~e~~qv~~ 239 (656)
T KOG1914|consen 161 QRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-VPPKGTKDEIQQVEL 239 (656)
T ss_pred HHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-CCCCCChHHHHHHHH
Confidence 666654223332 11111 1234467778887777652 121 12222 235789
Q ss_pred HHHHHHHHhhcccccccCc-----HHHHHHHHHhhccchhHHHHHHHHHHHHHhcc--------------HHHHHHHHHH
Q 007648 214 WLELCDLLTTHATEISGLN-----VDAIIRGGIRKFTDEVGRLWTSLADYYIRREL--------------FEKARDIFEE 274 (594)
Q Consensus 214 w~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~ 274 (594)
|..+++|++.+|-...+.+ .--++++++.-.+-. +++|+.++.++...++ .+++..+|++
T Consensus 240 W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~-peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr 318 (656)
T KOG1914|consen 240 WKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYH-PEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYER 318 (656)
T ss_pred HHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHH
Confidence 9999999999996532221 112445555543322 5799999999998888 7999999999
Q ss_pred HHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhh
Q 007648 275 GMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKD 354 (594)
Q Consensus 275 al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (594)
++...-.. ...+|.+++++++...+ .+ .
T Consensus 319 ~I~~l~~~--~~~Ly~~~a~~eE~~~~-------~n-~------------------------------------------ 346 (656)
T KOG1914|consen 319 AIEGLLKE--NKLLYFALADYEESRYD-------DN-K------------------------------------------ 346 (656)
T ss_pred HHHHHHHH--HHHHHHHHHhhHHHhcc-------cc-h------------------------------------------
Confidence 99875433 24788889998886421 00 0
Q ss_pred HHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHH
Q 007648 355 VDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKL 432 (594)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~ 432 (594)
..+-...+.+++. ....+|.- +|..+..+.. .-+..|+.+|.+|-+. +.. ...+++.-|.+
T Consensus 347 ~~~~~~~~~~ll~---------~~~~~~tL--v~~~~mn~irR~eGlkaaR~iF~kaR~~--~r~----~hhVfVa~A~m 409 (656)
T KOG1914|consen 347 EKKVHEIYNKLLK---------IEDIDLTL--VYCQYMNFIRRAEGLKAARKIFKKARED--KRT----RHHVFVAAALM 409 (656)
T ss_pred hhhhHHHHHHHHh---------hhccCCce--ehhHHHHHHHHhhhHHHHHHHHHHHhhc--cCC----cchhhHHHHHH
Confidence 0011223444321 12223332 3455555543 3477899999999874 211 23667777777
Q ss_pred HH-hcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcC--CchhHhhhhhccCChhhhH
Q 007648 433 YE-TYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE--PSVEVRRRVAADGNEPVQM 509 (594)
Q Consensus 433 ~~-~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~ 509 (594)
+. ..+|..-|..+|+-+|+..+++| ..-+.|..++...++=..||.+|+|++.. .|+
T Consensus 410 Ey~cskD~~~AfrIFeLGLkkf~d~p----~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~---------------- 469 (656)
T KOG1914|consen 410 EYYCSKDKETAFRIFELGLKKFGDSP----EYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD---------------- 469 (656)
T ss_pred HHHhcCChhHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh----------------
Confidence 66 68999999999999999999999 88899999999999999999999999987 553
Q ss_pred HhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccC
Q 007648 510 KLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRI 546 (594)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P 546 (594)
++..+|..++++|...|+.+.++++-+|-....|
T Consensus 470 ---ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 470 ---KSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred ---hhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 3569999999999999999999999999988888
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.94 E-value=1.5e-23 Score=228.97 Aligned_cols=336 Identities=12% Similarity=0.031 Sum_probs=238.0
Q ss_pred HHHHHHH-HHHcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHH
Q 007648 29 LWWRYLV-AKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIM 107 (594)
Q Consensus 29 ~w~~~~~-~~~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~ 107 (594)
.-...+. ...+|+++.|..+++..+..+|.+++.+...+... ...|+++.|...|++++..+|+++..|..
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~--------l~~g~~~~A~~~l~~~l~~~P~~~~a~~~ 115 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISP--------LASSQPDAVLQVVNKLLAVNVCQPEDVLL 115 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhH--------hhcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 3333333 33479999999999999999999999998887554 45699999999999999999999999999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHHHH--HHHHhccc
Q 007648 108 YLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFI--EFLVKSKL 185 (594)
Q Consensus 108 y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~--~~~~~~~~ 185 (594)
.+.++...|+++.|...|+++++..|.+ ..+|..++..+...|+. ++|...+++++...|++...+. ..+...|+
T Consensus 116 la~~l~~~g~~~~Ai~~l~~Al~l~P~~--~~a~~~la~~l~~~g~~-~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~ 192 (656)
T PRK15174 116 VASVLLKSKQYATVADLAEQAWLAFSGN--SQIFALHLRTLVLMDKE-LQAISLARTQAQEVPPRGDMIATCLSFLNKSR 192 (656)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHCCCh-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999986 78888889898899999 9999999999999998876332 23567788
Q ss_pred HHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccH
Q 007648 186 WQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELF 265 (594)
Q Consensus 186 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~ 265 (594)
+++|...+++++.. .|. .....+..++..+...|++
T Consensus 193 ~~eA~~~~~~~l~~------------------------~~~--------------------~~~~~~~~l~~~l~~~g~~ 228 (656)
T PRK15174 193 LPEDHDLARALLPF------------------------FAL--------------------ERQESAGLAVDTLCAVGKY 228 (656)
T ss_pred HHHHHHHHHHHHhc------------------------CCC--------------------cchhHHHHHHHHHHHCCCH
Confidence 88888887776621 000 0012234456667788888
Q ss_pred HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhc
Q 007648 266 EKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLN 345 (594)
Q Consensus 266 ~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (594)
++|...|++++...|++.. .+......... .++.
T Consensus 229 ~eA~~~~~~al~~~p~~~~---~~~~Lg~~l~~--------~G~~----------------------------------- 262 (656)
T PRK15174 229 QEAIQTGESALARGLDGAA---LRRSLGLAYYQ--------SGRS----------------------------------- 262 (656)
T ss_pred HHHHHHHHHHHhcCCCCHH---HHHHHHHHHHH--------cCCc-----------------------------------
Confidence 8888888888888776542 22111111100 0000
Q ss_pred cccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCch
Q 007648 346 GFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPH 423 (594)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~ 423 (594)
......+...|++ ++..+|+++.++..++.++. |++++|+..|++++.. .|+ .+
T Consensus 263 ------~eA~~~A~~~~~~------------Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-~P~-----~~ 318 (656)
T PRK15174 263 ------REAKLQAAEHWRH------------ALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT-HPD-----LP 318 (656)
T ss_pred ------hhhHHHHHHHHHH------------HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCC-----CH
Confidence 0001123445555 46667777777777766653 6677777777777764 332 45
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCch
Q 007648 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSV 493 (594)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 493 (594)
.++..+|.++...|++++|+..|++++..+|+++ ..+...+..+...|++++|+..|+++++..|+
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~----~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASDEFVQLAREKGVTS----KWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 6666777777777777777777777777777665 44444555566667777777777777777763
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.94 E-value=7.7e-23 Score=228.05 Aligned_cols=416 Identities=10% Similarity=0.001 Sum_probs=254.6
Q ss_pred hCCCCHHHHHHHHHHHH-cCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCC
Q 007648 22 RNPFSLKLWWRYLVAKR-EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHK 100 (594)
Q Consensus 22 ~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~ 100 (594)
.+|.+...=-.|++... .|+.+.|..+|.+++...|.+...|...+... ...|++++|...|++++..+|.
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~--------~~~g~~~~A~~~~~~al~~~P~ 81 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAY--------RNLKQWQNSLTLWQKALSLEPQ 81 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHHhCCC
Confidence 45555544444444333 69999999999999998899998998888776 4568999999999999999999
Q ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHH---HH
Q 007648 101 MPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIED---FI 177 (594)
Q Consensus 101 ~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~---~~ 177 (594)
++.++..++.++...|++++|+..++++++..|.+ .. |..++.+....|+. ++|+..|+++++..|++... ++
T Consensus 82 ~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~--~~-~~~la~~l~~~g~~-~~Al~~l~~al~~~P~~~~~~~~la 157 (765)
T PRK10049 82 NDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDK--AN-LLALAYVYKRAGRH-WDELRAMTQALPRAPQTQQYPTEYV 157 (765)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HH-HHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999999999999999999999986 56 88888888899999 99999999999999999863 45
Q ss_pred HHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHH
Q 007648 178 EFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLAD 257 (594)
Q Consensus 178 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~ 257 (594)
.++...+..++|...++++...|... ..+. ..|.. ..+...++.
T Consensus 158 ~~l~~~~~~e~Al~~l~~~~~~p~~~---------------~~l~--------------------~~~~~-~~~r~~~~~ 201 (765)
T PRK10049 158 QALRNNRLSAPALGAIDDANLTPAEK---------------RDLE--------------------ADAAA-ELVRLSFMP 201 (765)
T ss_pred HHHHHCCChHHHHHHHHhCCCCHHHH---------------HHHH--------------------HHHHH-HHHHhhccc
Confidence 66777889999999888776433210 0000 00000 111122222
Q ss_pred HHHHhccH---HHHHHHHHHHHhhhccccchHHHH-HHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhh
Q 007648 258 YYIRRELF---EKARDIFEEGMMTVVTVRDFSVIF-DSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVN 333 (594)
Q Consensus 258 ~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~l~-~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (594)
.....+++ ++|++.|+.++...|.+++....+ ..........
T Consensus 202 ~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L---------------------------------- 247 (765)
T PRK10049 202 TRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL---------------------------------- 247 (765)
T ss_pred ccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH----------------------------------
Confidence 22223344 789999999997755544211111 0100000000
Q ss_pred hhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccC---CCChHHHHHHHHHhcCCchhHHHHHHHHH
Q 007648 334 LSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQN---PHNVEQWHRRVKIFEGNPTKQILTYTEAV 410 (594)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---p~~~~~~~~~~~~~~~~~~~a~~~y~~Ai 410 (594)
+. .+....++..|+++ ++.. |.++..|...+.+..|++++|+..|++++
T Consensus 248 -----l~-----------~g~~~eA~~~~~~l------------l~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 248 -----LA-----------RDRYKDVISEYQRL------------KAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred -----HH-----------hhhHHHHHHHHHHh------------hccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 00 01122233344442 2222 34444444333333455666666666655
Q ss_pred hccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhh-----------HHHHHHHHHHHHHhcCChHH
Q 007648 411 RTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDH-----------LASIWCEWAEMELRHKNFKG 479 (594)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 479 (594)
.. +|... .........++..+.+.|++++|+..++++....|..... ...+...++.++...|++++
T Consensus 300 ~~-~p~~~-~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e 377 (765)
T PRK10049 300 YH-PETIA-DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ 377 (765)
T ss_pred hc-CCCCC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence 42 22110 0012334444444455566666666666665554422110 11334455555555566666
Q ss_pred HHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 007648 480 ALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLL 559 (594)
Q Consensus 480 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~ 559 (594)
|++++++++...|+ ++.++..++.++...|++++|.+.+++++.++|+++.++...+.++
T Consensus 378 A~~~l~~al~~~P~--------------------n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a 437 (765)
T PRK10049 378 AEMRARELAYNAPG--------------------NQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTA 437 (765)
T ss_pred HHHHHHHHHHhCCC--------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 66666666666663 3455566666666666666666666666666666666666666666
Q ss_pred HHhchhhhhh
Q 007648 560 EVWTLLHVFL 569 (594)
Q Consensus 560 ~~~g~~~~a~ 569 (594)
...|++++|+
T Consensus 438 l~~~~~~~A~ 447 (765)
T PRK10049 438 LDLQEWRQMD 447 (765)
T ss_pred HHhCCHHHHH
Confidence 6666555554
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=1.7e-21 Score=213.40 Aligned_cols=448 Identities=12% Similarity=0.037 Sum_probs=297.1
Q ss_pred cchHhHHHHhhCCCCHHHHHHHHHHH-HcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHH
Q 007648 12 DDLLYEEELLRNPFSLKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNT 90 (594)
Q Consensus 12 ~~~~~e~~l~~~P~~~~~w~~~~~~~-~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~ 90 (594)
+-..|+++|..+|. ...|...+... ..|++++|...|+++++.+|.++..|...+... ...|++++|+..
T Consensus 146 Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~--------~~lg~~~eA~~~ 216 (615)
T TIGR00990 146 AIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAY--------DGLGKYADALLD 216 (615)
T ss_pred HHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--------HHcCCHHHHHHH
Confidence 45677888899995 67787777744 479999999999999999999999999887765 445899999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCC
Q 007648 91 FERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDP 170 (594)
Q Consensus 91 ~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p 170 (594)
|..++..++.+.........-... ..+......++...|.+ ...|...+.+..... . ......+....+.+|
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 217 LTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPEN--LPSVTFVGNYLQSFR-P-KPRPAGLEDSNELDE 288 (615)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHcc-C-Ccchhhhhccccccc
Confidence 998887776554432222222111 33445555566666653 223333333332211 1 222233333344444
Q ss_pred CCHHHHHHHH------HhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhc
Q 007648 171 SHIEDFIEFL------VKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKF 244 (594)
Q Consensus 171 ~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (594)
.....+..+. ...+++++|...|++++..... +......|.....+....++. ..+...+++++...
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~----~~~~a~a~~~lg~~~~~~g~~---~eA~~~~~kal~l~ 361 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL----GEKEAIALNLRGTFKCLKGKH---LEALADLSKSIELD 361 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC----ChhhHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcC
Confidence 3322222111 1235677777777777732110 011122343333333222221 12345566777777
Q ss_pred cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcc
Q 007648 245 TDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAE 324 (594)
Q Consensus 245 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (594)
|.. ...|+.+|.++...|++++|...|++++...|++.. ++.....+...
T Consensus 362 P~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~~lg~~~~~-------------------------- 411 (615)
T TIGR00990 362 PRV-TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD---IYYHRAQLHFI-------------------------- 411 (615)
T ss_pred CCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH--------------------------
Confidence 764 678999999999999999999999999999888763 33222211110
Q ss_pred hhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CCchhH
Q 007648 325 DEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQ 402 (594)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a 402 (594)
.++...++..|++ ++..+|++...|..++.++. |++++|
T Consensus 412 ---------------------------~g~~~~A~~~~~k------------al~l~P~~~~~~~~la~~~~~~g~~~eA 452 (615)
T TIGR00990 412 ---------------------------KGEFAQAGKDYQK------------SIDLDPDFIFSHIQLGVTQYKEGSIASS 452 (615)
T ss_pred ---------------------------cCCHHHHHHHHHH------------HHHcCccCHHHHHHHHHHHHHCCCHHHH
Confidence 1234456677777 57889999999999988874 899999
Q ss_pred HHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHH--HHHHHHHH-HhcCChHH
Q 007648 403 ILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASI--WCEWAEME-LRHKNFKG 479 (594)
Q Consensus 403 ~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~--~~~~~~~~-~~~~~~~~ 479 (594)
+..|++++...|. .+.+|..+|.++...|++++|+..|++|+++.|++......+ ++..+..+ ...|++++
T Consensus 453 ~~~~~~al~~~P~------~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~e 526 (615)
T TIGR00990 453 MATFRRCKKNFPE------APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIE 526 (615)
T ss_pred HHHHHHHHHhCCC------ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHH
Confidence 9999999986433 578999999999999999999999999999998764221111 22222222 34699999
Q ss_pred HHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 007648 480 ALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLL 559 (594)
Q Consensus 480 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~ 559 (594)
|+.+++++++.+|+ +...+..++.++.+.|++++|++.|++++++.+...+.+.......
T Consensus 527 A~~~~~kAl~l~p~--------------------~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~~a~~~~~ 586 (615)
T TIGR00990 527 AENLCEKALIIDPE--------------------CDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQAISYAE 586 (615)
T ss_pred HHHHHHHHHhcCCC--------------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999999995 4567889999999999999999999999999987666443322221
Q ss_pred HHhchhhhhhhcccCcccch
Q 007648 560 EVWTLLHVFLLHVPFTFSGL 579 (594)
Q Consensus 560 ~~~g~~~~a~~~~~~~~~~~ 579 (594)
. .--.....+.||++..-+
T Consensus 587 a-~~~~~~~~~~~~~~~~~~ 605 (615)
T TIGR00990 587 A-TRTQIQVQEDYPVLASKL 605 (615)
T ss_pred H-HHHHHHHHHHhHHHHHHH
Confidence 1 111123345567665444
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.93 E-value=4.8e-22 Score=221.72 Aligned_cols=398 Identities=8% Similarity=0.061 Sum_probs=294.6
Q ss_pred hHhHHHHhhCCCCHHHHHHHHHHHH-cCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHH
Q 007648 14 LLYEEELLRNPFSLKLWWRYLVAKR-EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFE 92 (594)
Q Consensus 14 ~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 92 (594)
..++..+..+|.+...|..++.... .++++.|..+|+++++..|.++++|...+... ...|++++|+..++
T Consensus 36 ~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l--------~~~g~~~eA~~~l~ 107 (765)
T PRK10049 36 TVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL--------ADAGQYDEALVKAK 107 (765)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--------HHCCCHHHHHHHHH
Confidence 4566666678999999999998664 89999999999999999999999998877765 45689999999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCC
Q 007648 93 RALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSH 172 (594)
Q Consensus 93 ~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~ 172 (594)
++++.+|+++. |..++.++...|+++.|...++++++..|.+ ..++..++.+....+.. +.|+..++++.. .|+.
T Consensus 108 ~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~--~~~~~~la~~l~~~~~~-e~Al~~l~~~~~-~p~~ 182 (765)
T PRK10049 108 QLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQT--QQYPTEYVQALRNNRLS-APALGAIDDANL-TPAE 182 (765)
T ss_pred HHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCh-HHHHHHHHhCCC-CHHH
Confidence 99999999999 9999999999999999999999999999986 78888888887777887 889999988776 6653
Q ss_pred HH--------HHHHHHH-----hcccH---HHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHH
Q 007648 173 IE--------DFIEFLV-----KSKLW---QEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAI 236 (594)
Q Consensus 173 ~~--------~~~~~~~-----~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 236 (594)
.. ...++.. ..+++ ++|+..++.++.. ...+|+.
T Consensus 183 ~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~---------------------~~~~p~~--------- 232 (765)
T PRK10049 183 KRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL---------------------WHDNPDA--------- 232 (765)
T ss_pred HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh---------------------cccCCcc---------
Confidence 11 0111111 11223 4555555554410 0011110
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCccccc
Q 007648 237 IRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEED 316 (594)
Q Consensus 237 ~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~ 316 (594)
.| .....++...-.+...|++++|++.|+++++..|..+.....+.+-+.+.
T Consensus 233 -------~~-~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~-------------------- 284 (765)
T PRK10049 233 -------TA-DYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLK-------------------- 284 (765)
T ss_pred -------ch-HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHh--------------------
Confidence 00 01223333222335679999999999999887654443222332111111
Q ss_pred ccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCC----hHHHHHHH
Q 007648 317 DEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHN----VEQWHRRV 392 (594)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~----~~~~~~~~ 392 (594)
.++...++..|+++ +..+|.+ ......++
T Consensus 285 -----------------------------------~g~~e~A~~~l~~~------------l~~~p~~~~~~~~~~~~L~ 317 (765)
T PRK10049 285 -----------------------------------LHQPEKAQSILTEL------------FYHPETIADLSDEELADLF 317 (765)
T ss_pred -----------------------------------cCCcHHHHHHHHHH------------hhcCCCCCCCChHHHHHHH
Confidence 11233455566663 4556654 23344443
Q ss_pred H--HhcCCchhHHHHHHHHHhccCCCcc-------c--CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHH
Q 007648 393 K--IFEGNPTKQILTYTEAVRTVDPMKA-------V--GKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLA 461 (594)
Q Consensus 393 ~--~~~~~~~~a~~~y~~Ai~~~~~~~~-------~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~ 461 (594)
. +..+++++|+..++++....|+... . .....++..++.++...|++++|+.++++++...|.++
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~---- 393 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ---- 393 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----
Confidence 3 3358999999999998876443110 0 01245778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHH
Q 007648 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (594)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (594)
.+++.++.++...|++++|++.++++++..|+ ++.++...+....+.|++++|.+.++++
T Consensus 394 ~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd--------------------~~~l~~~~a~~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 394 GLRIDYASVLQARGWPRAAENELKKAEVLEPR--------------------NINLEVEQAWTALDLQEWRQMDVLTDDV 453 (765)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--------------------ChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999995 5688889999999999999999999999
Q ss_pred HhccCCchHHHH
Q 007648 542 LDLRIATPQIII 553 (594)
Q Consensus 542 l~~~P~~~~~~~ 553 (594)
++..|+++.+..
T Consensus 454 l~~~Pd~~~~~~ 465 (765)
T PRK10049 454 VAREPQDPGVQR 465 (765)
T ss_pred HHhCCCCHHHHH
Confidence 999999997654
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=1e-21 Score=214.70 Aligned_cols=346 Identities=8% Similarity=0.009 Sum_probs=277.9
Q ss_pred CCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHH
Q 007648 79 ITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETS 158 (594)
Q Consensus 79 ~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a 158 (594)
...|+.+.|..+++.++...|.++..+..++-.....|+++.|...|++++...|.+ ...|..++......|+. ++|
T Consensus 53 ~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~--~~a~~~la~~l~~~g~~-~~A 129 (656)
T PRK15174 53 LRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ--PEDVLLVASVLLKSKQY-ATV 129 (656)
T ss_pred HhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCCH-HHH
Confidence 456899999999999999999999999999999999999999999999999999986 78899999998899999 999
Q ss_pred HHHHHHHHhhCCCCHHH---HHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHH
Q 007648 159 LRVYRRYLKYDPSHIED---FIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDA 235 (594)
Q Consensus 159 ~~~~~~~l~~~p~~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 235 (594)
+..|++++..+|++... .+.++...|++++|...+++++. ..|
T Consensus 130 i~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~------------------------~~P---------- 175 (656)
T PRK15174 130 ADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ------------------------EVP---------- 175 (656)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH------------------------hCC----------
Confidence 99999999999999863 45678899999999998876652 111
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccc
Q 007648 236 IIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEE 315 (594)
Q Consensus 236 ~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~ 315 (594)
++ ..++..++ .+...|++++|...+++++...|.... ........ .
T Consensus 176 ----------~~-~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~--~~~~~l~~---~----------------- 221 (656)
T PRK15174 176 ----------PR-GDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQ--ESAGLAVD---T----------------- 221 (656)
T ss_pred ----------CC-HHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcch--hHHHHHHH---H-----------------
Confidence 11 23444443 367899999999999999988654322 11100000 0
Q ss_pred cccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHh
Q 007648 316 DDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF 395 (594)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~ 395 (594)
+. ..+....+...|++ ++..+|+++..+..++.++
T Consensus 222 -----------------------l~----------~~g~~~eA~~~~~~------------al~~~p~~~~~~~~Lg~~l 256 (656)
T PRK15174 222 -----------------------LC----------AVGKYQEAIQTGES------------ALARGLDGAALRRSLGLAY 256 (656)
T ss_pred -----------------------HH----------HCCCHHHHHHHHHH------------HHhcCCCCHHHHHHHHHHH
Confidence 00 02345567777877 4788999999999999877
Q ss_pred c--CCchh----HHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHH
Q 007648 396 E--GNPTK----QILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAE 469 (594)
Q Consensus 396 ~--~~~~~----a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~ 469 (594)
. |++++ |+..|++++.. .|+ ...++..+|.++...|++++|+..+++++..+|+++ .++..++.
T Consensus 257 ~~~G~~~eA~~~A~~~~~~Al~l-~P~-----~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~----~a~~~La~ 326 (656)
T PRK15174 257 YQSGRSREAKLQAAEHWRHALQF-NSD-----NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP----YVRAMYAR 326 (656)
T ss_pred HHcCCchhhHHHHHHHHHHHHhh-CCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHH
Confidence 4 77774 89999999996 453 689999999999999999999999999999999999 88999999
Q ss_pred HHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCch
Q 007648 470 MELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP 549 (594)
Q Consensus 470 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~ 549 (594)
.+.+.|++++|+..|++++...|+ ++..+...+.++...|++++|++.|+++++..|+++
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~--------------------~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGV--------------------TSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcc--------------------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 999999999999999999999995 345556668888999999999999999999999976
Q ss_pred HHHHHHHHHHHHhchhhhhhhcccCc
Q 007648 550 QIIINYALLLEVWTLLHVFLLHVPFT 575 (594)
Q Consensus 550 ~~~~~~~~~~~~~g~~~~a~~~~~~~ 575 (594)
.. .+....+.++++++..+..
T Consensus 387 ~~-----~~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 387 PQ-----SFEEGLLALDGQISAVNLP 407 (656)
T ss_pred hh-----hHHHHHHHHHHHHHhcCCc
Confidence 21 1123345555555544443
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=1.2e-20 Score=210.66 Aligned_cols=261 Identities=12% Similarity=0.068 Sum_probs=196.6
Q ss_pred HHHhhccc--hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHH-----HHHHHHHHHhcCCCCCC
Q 007648 239 GGIRKFTD--EVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQ-----FEEIMVSAKMAKPDLSV 311 (594)
Q Consensus 239 ~~~~~~p~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~-----~e~~~~~~~l~~~~~~~ 311 (594)
+++...|+ + ..+|..+|.++.. ++.++|+..|.+++...|+... .+..++.. +++.... .+.+....
T Consensus 466 ~al~~~p~~~~-~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~--~L~lA~al~~~Gr~eeAi~~--~rka~~~~ 539 (987)
T PRK09782 466 RLLGDMSPSYD-AAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQ--HRAVAYQAYQVEDYATALAA--WQKISLHD 539 (987)
T ss_pred HhcccCCCCCC-HHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHH--HHHHHHHHHHCCCHHHHHHH--HHHHhccC
Confidence 34444454 4 6799999999987 8889999999999999987542 22223322 2222111 11000000
Q ss_pred cccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHH
Q 007648 312 EEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRR 391 (594)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~ 391 (594)
.. +. . +...-..+. ..++...+...|++ ++..+|.+......+
T Consensus 540 p~---------~~--a----~~~la~all----------~~Gd~~eA~~~l~q------------AL~l~P~~~~l~~~L 582 (987)
T PRK09782 540 MS---------NE--D----LLAAANTAQ----------AAGNGAARDRWLQQ------------AEQRGLGDNALYWWL 582 (987)
T ss_pred CC---------cH--H----HHHHHHHHH----------HCCCHHHHHHHHHH------------HHhcCCccHHHHHHH
Confidence 00 00 0 000000000 12345566677777 467788887776655
Q ss_pred HHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHH
Q 007648 392 VKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAE 469 (594)
Q Consensus 392 ~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~ 469 (594)
+... .|++++|...|++|+.. .| ...+|..+|.++.+.|++++|+..|++++..+|+++ .++..+|.
T Consensus 583 a~~l~~~Gr~~eAl~~~~~AL~l-~P------~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~----~a~~nLG~ 651 (987)
T PRK09782 583 HAQRYIPGQPELALNDLTRSLNI-AP------SANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS----NYQAALGY 651 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh-CC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHH
Confidence 4332 48999999999999985 45 267899999999999999999999999999999999 89999999
Q ss_pred HHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCch
Q 007648 470 MELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP 549 (594)
Q Consensus 470 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~ 549 (594)
++...|++++|+..|+++++..|+ ++.++..++.++...|++++|+..|++++++.|+++
T Consensus 652 aL~~~G~~eeAi~~l~~AL~l~P~--------------------~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHKGLPD--------------------DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA 711 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC--------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999999999995 679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhchhhhhhhccc
Q 007648 550 QIIINYALLLEVWTLLHVFLLHVP 573 (594)
Q Consensus 550 ~~~~~~~~~~~~~g~~~~a~~~~~ 573 (594)
.+...++.++.+..++..|.+.|.
T Consensus 712 ~i~~~~g~~~~~~~~~~~a~~~~~ 735 (987)
T PRK09782 712 LITPLTPEQNQQRFNFRRLHEEVG 735 (987)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999986553
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=1.8e-19 Score=201.33 Aligned_cols=508 Identities=12% Similarity=-0.003 Sum_probs=267.4
Q ss_pred CcchHhHHHHhhCCCCHHHHHHHHHHHH-cCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHH
Q 007648 11 EDDLLYEEELLRNPFSLKLWWRYLVAKR-EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNN 89 (594)
Q Consensus 11 ~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~ 89 (594)
++...|+.++..+|.+...+..+++... .|++++|+...+++++.+|.+..++...+.. +++++|..
T Consensus 62 ~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i------------~~~~kA~~ 129 (987)
T PRK09782 62 TAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI------------PVEVKSVT 129 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh------------ccChhHHH
Confidence 4456788888999988888888888554 7888999999999999999777766654321 56788888
Q ss_pred HHHHHHHhcCCChHHHHHHHHH--------HHhcccHHHHHHHHH-HHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHH
Q 007648 90 TFERALVTMHKMPRIWIMYLET--------LTSQKFITKARRTFD-RALCALPVTQHDRIWEIYLRFVEQEGIPIETSLR 160 (594)
Q Consensus 90 ~~~~al~~~P~~~~lw~~y~~~--------~~~~~~~~~A~~~~~-ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~ 160 (594)
+|+++++.+|++.++....+.. +.+. +.|.+.++ +.+...|.+ ..+......++..+++. +.|++
T Consensus 130 ~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~lr~~~~~~~~--~vL~L~~~rlY~~l~dw-~~Ai~ 203 (987)
T PRK09782 130 TVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLNDATFAASPEG--KTLRTDLLQRAIYLKQW-SQADT 203 (987)
T ss_pred HHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHHHhhhCCCCCc--HHHHHHHHHHHHHHhCH-HHHHH
Confidence 8888888888888877777766 3333 33333333 222211211 22333335666666776 66777
Q ss_pred HHHHHHhhCCCCHHH---HH-------------------------------HHHHhcccHHHHHHHHHHhhcCccccccc
Q 007648 161 VYRRYLKYDPSHIED---FI-------------------------------EFLVKSKLWQEAAERLASVLNDDQFYSIK 206 (594)
Q Consensus 161 ~~~~~l~~~p~~~~~---~~-------------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 206 (594)
.+.+.++..|.+... +. ..+.+.|+.++|.+.+++.-. ... ..
T Consensus 204 lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~--~~~-~~ 280 (987)
T PRK09782 204 LYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKP--LFT-TD 280 (987)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc--ccc-CC
Confidence 777777776665531 22 233333444444444333220 000 00
Q ss_pred ccchHHHHHHH------------------------------HHHHhhccccc--------cc------------------
Q 007648 207 GKTKHRLWLEL------------------------------CDLLTTHATEI--------SG------------------ 230 (594)
Q Consensus 207 ~~~~~~~w~~~------------------------------~~~~~~~~~~~--------~~------------------ 230 (594)
+ ....|.-. .+++..++... ..
T Consensus 281 ~--~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 358 (987)
T PRK09782 281 A--QEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNK 358 (987)
T ss_pred C--ccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCch
Confidence 0 00111110 01111110000 00
Q ss_pred CcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHH----HHhcC
Q 007648 231 LNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVS----AKMAK 306 (594)
Q Consensus 231 ~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~----~~l~~ 306 (594)
....+..+......|.+ .+.....+-...++|++.+|++.|+++....++...-..+-...+..-..... ..+..
T Consensus 359 ~~~~~~~~~~y~~~~~~-~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 359 AEALRLARLLYQQEPAN-LTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 00001111222222433 45677777788899999999999999988632221101222222222221100 00000
Q ss_pred CCC-CCcccccccccCCcchhhhHhhhhhhHHHHHHhhhc-cc------ccc-----chhhHHHHHHHHHhhhhhchhhh
Q 007648 307 PDL-SVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLN-GF------WLH-----DVKDVDLRLARLEHLMNRRPELA 373 (594)
Q Consensus 307 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 373 (594)
+++ ........-.+..... ...+..+....+. +. |.. ..+....++..|.+
T Consensus 438 l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~--------- 501 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGI-------ADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQ--------- 501 (987)
T ss_pred hccccccchhHHHHhhhhhh-------hhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHH---------
Confidence 110 0000000000000000 0000111111110 00 000 00011122222333
Q ss_pred hhhhhccCCCChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007648 374 NSVLLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQ 451 (594)
Q Consensus 374 ~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~ 451 (594)
++...|.+.. .+.++..+ .|++++|+..|++++.. +| ....|+.+|..+...|++++|...|+++++
T Consensus 502 ---Al~~~Pd~~~-~L~lA~al~~~Gr~eeAi~~~rka~~~-~p------~~~a~~~la~all~~Gd~~eA~~~l~qAL~ 570 (987)
T PRK09782 502 ---AEQRQPDAWQ-HRAVAYQAYQVEDYATALAAWQKISLH-DM------SNEDLLAAANTAQAAGNGAARDRWLQQAEQ 570 (987)
T ss_pred ---HHHhCCchHH-HHHHHHHHHHCCCHHHHHHHHHHHhcc-CC------CcHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3555676432 33344432 47788888888876653 44 234466667777777777777777777777
Q ss_pred ccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhH-hhhhh----ccCChh----hhHHh----hccHhhH
Q 007648 452 VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEV-RRRVA----ADGNEP----VQMKL----HKSLRLW 518 (594)
Q Consensus 452 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~----~~~~~~----~~~~~----~~~~~~~ 518 (594)
..|++. .++..++......|++++|...|+++++..|+.. +..++ -.+..+ ..... .+++.++
T Consensus 571 l~P~~~----~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~ 646 (987)
T PRK09782 571 RGLGDN----ALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQ 646 (987)
T ss_pred cCCccH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 776665 4444444333445777777777777777777411 11111 011111 11111 1467788
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhhhccc
Q 007648 519 TFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFLLHVP 573 (594)
Q Consensus 519 ~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~~~~~ 573 (594)
..++.++...|++++|+..|+++++++|+++.++.++|.++...|++++|+.++.
T Consensus 647 ~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 647 AALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888875543
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=4.5e-19 Score=185.99 Aligned_cols=501 Identities=13% Similarity=0.097 Sum_probs=265.8
Q ss_pred chHhHHHHhhCCCCH-----HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHH
Q 007648 13 DLLYEEELLRNPFSL-----KLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETL 87 (594)
Q Consensus 13 ~~~~e~~l~~~P~~~-----~~w~~~~~~~~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A 87 (594)
+.-|..+|..+|... ..|.-+.+. +..+.|...|+||++.+|.++.....+..+.... .....+..+
T Consensus 184 l~yyk~al~inp~~~aD~rIgig~Cf~kl---~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~-----~d~~s~~~~ 255 (1018)
T KOG2002|consen 184 LKYYKKALRINPACKADVRIGIGHCFWKL---GMSEKALLAFERALQLDPTCVSALVALGEVDLNF-----NDSDSYKKG 255 (1018)
T ss_pred HHHHHHHHhcCcccCCCccchhhhHHHhc---cchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHc-----cchHHHHHH
Confidence 344555555555322 334333333 5555666666666666666666555554443222 233445566
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 007648 88 NNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVT-QHDRIWEIYLRFVEQEGIPIETSLRVYRRYL 166 (594)
Q Consensus 88 ~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~-~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l 166 (594)
...+.+|...+|.+|.+...++..+.-.|++..+..+.+.++...-.. ...+-+...+..+..+|++ ++|-..|..++
T Consensus 256 ~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~-ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 256 VQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDF-EKAFKYYMESL 334 (1018)
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccH-HHHHHHHHHHH
Confidence 666666666666666666666666666666666666666655533111 0011233344555555666 66666666666
Q ss_pred hhCCCC-HH---HHHHHHHhcccHHHHHHHHHHhhc-CcccccccccchHHHHHHHHHHHhhc-ccccccCcHHHHHHHH
Q 007648 167 KYDPSH-IE---DFIEFLVKSKLWQEAAERLASVLN-DDQFYSIKGKTKHRLWLELCDLLTTH-ATEISGLNVDAIIRGG 240 (594)
Q Consensus 167 ~~~p~~-~~---~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~ 240 (594)
+.+|++ .. .+++.++..|++..+..+|+++.. .|.. ++.-.-++.+.... ........+..++.++
T Consensus 335 k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~--------~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 335 KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN--------YETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred ccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcch--------HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 666655 21 334556666666666666666652 2211 01000000000000 0000001123344444
Q ss_pred HhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHh-------hhcccc--chHHHHHHHHHHHHHHHHH--HhcCCCC
Q 007648 241 IRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMM-------TVVTVR--DFSVIFDSYSQFEEIMVSA--KMAKPDL 309 (594)
Q Consensus 241 ~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~--~~~~l~~~~~~~e~~~~~~--~l~~~~~ 309 (594)
+...|.+ .++|+.++++++... ...+...|..|+. ..|-.. ..+.+......+++....+ ++..+..
T Consensus 407 ~~~~~~d-~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~ 484 (1018)
T KOG2002|consen 407 LEQTPVD-SEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE 484 (1018)
T ss_pred Hhccccc-HHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh
Confidence 4444443 455555555554332 2222444444442 111100 1122222233333332111 1111000
Q ss_pred CCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHH
Q 007648 310 SVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWH 389 (594)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~ 389 (594)
.. ...+.++..+...|+.+ ...+. ......+-..|.. +++.+|.-++.++
T Consensus 485 ~~-------n~de~~~~~lt~~YNla-rl~E~----------l~~~~~A~e~Yk~------------Ilkehp~YId~yl 534 (1018)
T KOG2002|consen 485 VA-------NKDEGKSTNLTLKYNLA-RLLEE----------LHDTEVAEEMYKS------------ILKEHPGYIDAYL 534 (1018)
T ss_pred hc-------CccccccchhHHHHHHH-HHHHh----------hhhhhHHHHHHHH------------HHHHCchhHHHHH
Confidence 00 00000011111112111 00010 1122334455666 5899999999999
Q ss_pred HHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHH
Q 007648 390 RRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEW 467 (594)
Q Consensus 390 ~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~ 467 (594)
.++.... ++..+|...+..++...+. .+.+|--+|.++........|..-|+..++..-..++++ ..+.+
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d~~------np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Y--sliaL 606 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNIDSS------NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAY--SLIAL 606 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhcccC------CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchh--HHHHh
Confidence 9986553 6788899999999985332 689999999999988888899998888777433333222 23344
Q ss_pred HHHHHh------------cCChHHHHHHHHHHhcCCchhHhh--hhh----ccCChhhhHHhh--------ccHhhHHHH
Q 007648 468 AEMELR------------HKNFKGALELMRRATAEPSVEVRR--RVA----ADGNEPVQMKLH--------KSLRLWTFY 521 (594)
Q Consensus 468 ~~~~~~------------~~~~~~A~~~~~~al~~~p~~~~~--~~~----~~~~~~~~~~~~--------~~~~~~~~~ 521 (594)
|.+.++ .+.+++|.++|.++|+.+|.++|. -++ ..+..+.+..+| +.+++|+..
T Consensus 607 GN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNl 686 (1018)
T KOG2002|consen 607 GNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNL 686 (1018)
T ss_pred hHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeH
Confidence 444322 356789999999999999976532 111 112323233332 366789999
Q ss_pred HHHHHHhCChHHHHHHHHHHHhccC--CchHHHHHHHHHHHHhchhhhhhh
Q 007648 522 VDLEESLGNLESTRAVYERILDLRI--ATPQIIINYALLLEVWTLLHVFLL 570 (594)
Q Consensus 522 ~~~~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~~~~~~~~~g~~~~a~~ 570 (594)
+.++...|+|-.|++.|+++++.+- +++++...|++++.+.|.+.+|..
T Consensus 687 ah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 687 AHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999889999999999999988653 467888888999888888888764
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=5.5e-19 Score=185.32 Aligned_cols=422 Identities=14% Similarity=0.084 Sum_probs=281.9
Q ss_pred hhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhcccHHH
Q 007648 42 FKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMP-RIWIMYLETLTSQKFITK 120 (594)
Q Consensus 42 ~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~-~lw~~y~~~~~~~~~~~~ 120 (594)
.+.|-..|...++..|.+....+--+... .+.++|-.|..+|.+|+..+|..+ ..-+..+.+..+++..+.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~--------ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~ 217 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIA--------YNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEK 217 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHH--------hccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhh
Confidence 47788888888888888776666555554 567888999999999998887543 455666778888888899
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHhhCCCCHH---HHHHHHHhcccHHHHHHHHHH
Q 007648 121 ARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIP--IETSLRVYRRYLKYDPSHIE---DFIEFLVKSKLWQEAAERLAS 195 (594)
Q Consensus 121 A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~--~~~a~~~~~~~l~~~p~~~~---~~~~~~~~~~~~~~a~~~~~~ 195 (594)
|+..|+||++++|.+ ......++.+....++. ...+...+.++...+|.++. .+++.+...|++..+.++...
T Consensus 218 a~~a~~ralqLdp~~--v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ 295 (1018)
T KOG2002|consen 218 ALLAFERALQLDPTC--VSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEH 295 (1018)
T ss_pred HHHHHHHHHhcChhh--HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 999999999999965 45555555544332221 15788888888888888885 455677888889888888888
Q ss_pred hhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 007648 196 VLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEG 275 (594)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 275 (594)
++..-...+... +.+..+++-....++- ..+-..+..+++..|+++.-....+|++++..|+.+.+..+|+++
T Consensus 296 ai~~t~~~~~~a----es~Y~~gRs~Ha~Gd~---ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv 368 (1018)
T KOG2002|consen 296 AIKNTENKSIKA----ESFYQLGRSYHAQGDF---EKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKV 368 (1018)
T ss_pred HHHhhhhhHHHH----HHHHHHHHHHHhhccH---HHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHH
Confidence 873211101100 1111122211111110 112345556666666665556777888888888888888888888
Q ss_pred HhhhccccchHHH-HHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhh
Q 007648 276 MMTVVTVRDFSVI-FDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKD 354 (594)
Q Consensus 276 l~~~p~~~~~~~l-~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (594)
+...|+..+...+ ...|....+. ...
T Consensus 369 ~k~~p~~~etm~iLG~Lya~~~~~-----------------------------------------------------~~~ 395 (1018)
T KOG2002|consen 369 LKQLPNNYETMKILGCLYAHSAKK-----------------------------------------------------QEK 395 (1018)
T ss_pred HHhCcchHHHHHHHHhHHHhhhhh-----------------------------------------------------hHH
Confidence 8888876531111 1111111000 001
Q ss_pred HHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc-CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHH
Q 007648 355 VDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE-GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLY 433 (594)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~-~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~ 433 (594)
...+.....+ +++..|.+.++|..++.++. +++-.++.+|.+|+..+-... ....++...+.|..+
T Consensus 396 ~d~a~~~l~K------------~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~-~~ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 396 RDKASNVLGK------------VLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKG-KQIPPEVLNNVASLH 462 (1018)
T ss_pred HHHHHHHHHH------------HHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcC-CCCCHHHHHhHHHHH
Confidence 2234445555 57888999999999999986 788888999999995321100 012467888999999
Q ss_pred HhcCCHHHHHHHHHHHHhc-----cCCCh-hhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhh
Q 007648 434 ETYKDIANARVIFDKAVQV-----NYKTV-DHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPV 507 (594)
Q Consensus 434 ~~~~~~~~A~~~~~kal~~-----~p~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 507 (594)
...|++..|...|.+|+.. +++.. .+...+-+.++.++.+.++++.|.++|...++.+|+-+
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YI------------ 530 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYI------------ 530 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhH------------
Confidence 9999999999999999986 22221 11123578889999999999999999999999999622
Q ss_pred hHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhh
Q 007648 508 QMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLH 566 (594)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~ 566 (594)
+.+..++-+....++..+|...+..+++.+-.+|.+|.-+|.++.+...+.
T Consensus 531 --------d~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 531 --------DAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred --------HHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc
Confidence 334444445555667777777777777777777777777776665554333
No 24
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.87 E-value=1.4e-18 Score=167.56 Aligned_cols=460 Identities=17% Similarity=0.230 Sum_probs=259.8
Q ss_pred CcchHhHHHHhhCCCCHHHHHHHHHHH-HcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHH
Q 007648 11 EDDLLYEEELLRNPFSLKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNN 89 (594)
Q Consensus 11 ~~~~~~e~~l~~~P~~~~~w~~~~~~~-~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~ 89 (594)
.+..-+.+.++.||.|...|..++++. ..+..+..+++|++....+|.-+.+|..|+.-+ ...+++.....
T Consensus 26 ~D~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~E--------LA~~df~svE~ 97 (660)
T COG5107 26 GDELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGE--------LARKDFRSVES 97 (660)
T ss_pred chHHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcch--------hhhhhHHHHHH
Confidence 345577888999999999999999965 478888899999999988888888888888765 33355566666
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhccc------HHHHHHHHHHHHH---hCCCCCHHHHHHHHHHHHHHc---CC----
Q 007648 90 TFERALVTMHKMPRIWIMYLETLTSQKF------ITKARRTFDRALC---ALPVTQHDRIWEIYLRFVEQE---GI---- 153 (594)
Q Consensus 90 ~~~~al~~~P~~~~lw~~y~~~~~~~~~------~~~A~~~~~ral~---~~p~~~~~~~w~~~~~~~~~~---~~---- 153 (594)
+|.|+|... -+.++|..|.....+.++ --.+.+.|+=.+. ..|.+ ..+|..|+.|.+.- |.
T Consensus 98 lf~rCL~k~-l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s--~~~W~ey~~fle~~~~~~kwEeQ 174 (660)
T COG5107 98 LFGRCLKKS-LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQS--ENYWDEYGLFLEYIEELGKWEEQ 174 (660)
T ss_pred HHHHHHhhh-ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccc--cchHHHHHHHHHhccccccHHHH
Confidence 666665433 224555555555444321 0112222222222 12322 44555555443210 00
Q ss_pred -chHHHHHHHHHHHhhCCCCHH----HHHHHHHh-------------cccHHHHHHHHHHhhc--------Ccccccc--
Q 007648 154 -PIETSLRVYRRYLKYDPSHIE----DFIEFLVK-------------SKLWQEAAERLASVLN--------DDQFYSI-- 205 (594)
Q Consensus 154 -~~~~a~~~~~~~l~~~p~~~~----~~~~~~~~-------------~~~~~~a~~~~~~~~~--------~~~~~~~-- 205 (594)
.++..+..|.+++...-.+.+ .|-++... .--|..|++.|+++.+ +|.+...
T Consensus 175 qrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~n 254 (660)
T COG5107 175 QRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTAN 254 (660)
T ss_pred HHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhc
Confidence 124455555555544323322 11111111 1134566666666652 3433322
Q ss_pred -cccchHHHHHHHHHHHhhcccccccCcHH----HHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Q 007648 206 -KGKTKHRLWLELCDLLTTHATEISGLNVD----AIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVV 280 (594)
Q Consensus 206 -~~~~~~~~w~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 280 (594)
.++.+...|..+++++..+|-...+.... -++++++.-+|=. +++|+.+..++...++-++|.++.++++.-.|
T Consensus 255 K~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~-~evw~dys~Y~~~isd~q~al~tv~rg~~~sp 333 (660)
T COG5107 255 KAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYA-EEVWFDYSEYLIGISDKQKALKTVERGIEMSP 333 (660)
T ss_pred cccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHhhccHHHHHHHHHHhcccCCC
Confidence 23345567999999999988543322222 2344555544432 68999999999999999999999999988777
Q ss_pred cccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHH
Q 007648 281 TVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLA 360 (594)
Q Consensus 281 ~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (594)
+-. ..+...++...+ ...++-++......+.+++.....-...+.
T Consensus 334 sL~------~~lse~yel~nd-----------------------~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~------ 378 (660)
T COG5107 334 SLT------MFLSEYYELVND-----------------------EEAVYGCFDKCTQDLKRKYSMGESESASKV------ 378 (660)
T ss_pred chh------eeHHHHHhhccc-----------------------HHHHhhhHHHHHHHHHHHHhhhhhhhhccc------
Confidence 622 112222211000 001111111111111111110000000000
Q ss_pred HHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHH-hcC
Q 007648 361 RLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYE-TYK 437 (594)
Q Consensus 361 ~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~-~~~ 437 (594)
+..+.++.+..++.-..-.-+|..+..... .-.+.|+.+|-++-+. +- ....+++..|.++. ..|
T Consensus 379 ------D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~-----~~h~vyi~~A~~E~~~~~ 446 (660)
T COG5107 379 ------DNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKE-GI-----VGHHVYIYCAFIEYYATG 446 (660)
T ss_pred ------cCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CC-----CCcceeeeHHHHHHHhcC
Confidence 000000000011111111122333333322 2367788888887663 10 13456666666655 688
Q ss_pred CHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhh
Q 007648 438 DIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRL 517 (594)
Q Consensus 438 ~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (594)
++.-|-.+|+-++...|+++ ..-..|-.+++..++-..|+.+|+.++..-..+ +-..+
T Consensus 447 d~~ta~~ifelGl~~f~d~~----~y~~kyl~fLi~inde~naraLFetsv~r~~~~------------------q~k~i 504 (660)
T COG5107 447 DRATAYNIFELGLLKFPDST----LYKEKYLLFLIRINDEENARALFETSVERLEKT------------------QLKRI 504 (660)
T ss_pred CcchHHHHHHHHHHhCCCch----HHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHh------------------hhhHH
Confidence 88899999999999888888 666667777788888888999999887553321 12378
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhccCCchHH
Q 007648 518 WTFYVDLEESLGNLESTRAVYERILDLRIATPQI 551 (594)
Q Consensus 518 ~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 551 (594)
|..+++.|...|+...|..+-++...+.|..-.+
T Consensus 505 y~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~ 538 (660)
T COG5107 505 YDKMIEYESMVGSLNNVYSLEERFRELVPQENLI 538 (660)
T ss_pred HHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHH
Confidence 8999999999999999999989988888876443
No 25
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.86 E-value=2.3e-18 Score=169.93 Aligned_cols=420 Identities=16% Similarity=0.250 Sum_probs=275.0
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 007648 50 ERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRAL 129 (594)
Q Consensus 50 e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral 129 (594)
++-++.+|.+.+.|..++... .+ ..+++++..|++.+..+|.++..|..|++.+++.++++....+|.|+|
T Consensus 10 ~~rie~nP~di~sw~~lire~--------qt-~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCL 80 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREA--------QT-QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCL 80 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHH--------cc-CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 677889999999999998875 22 378999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHHHHHHHHhcccHHHHHHHHHHhhcCcccccccccc
Q 007648 130 CALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKT 209 (594)
Q Consensus 130 ~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 209 (594)
...=+ .++|..|+.+....+.....++..--++ |+-|... + .....
T Consensus 81 vkvLn---lDLW~lYl~YVR~~~~~~~~~r~~m~qA--------------------y~f~l~k---i--------g~di~ 126 (656)
T KOG1914|consen 81 VKVLN---LDLWKLYLSYVRETKGKLFGYREKMVQA--------------------YDFALEK---I--------GMDIK 126 (656)
T ss_pred HHHhh---HhHHHHHHHHHHHHccCcchHHHHHHHH--------------------HHHHHHH---h--------ccCcc
Confidence 85443 6899999999876554412222111110 1111111 0 01123
Q ss_pred hHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHH
Q 007648 210 KHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIF 289 (594)
Q Consensus 210 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~ 289 (594)
++.+|.+|+.|++.-+ ..|.+...+ +.+..|.+|++|+..--.+ ...+|
T Consensus 127 s~siW~eYi~FL~~ve----------------------------a~gk~ee~Q-RI~~vRriYqral~tPm~n--lEkLW 175 (656)
T KOG1914|consen 127 SYSIWDEYINFLEGVE----------------------------AVGKYEENQ-RITAVRRIYQRALVTPMHN--LEKLW 175 (656)
T ss_pred cchhHHHHHHHHHccc----------------------------ccccHHHHH-HHHHHHHHHHHHhcCcccc--HHHHH
Confidence 5689999998887433 223333334 7888889999988753333 34888
Q ss_pred HHHHHHHHHHHHHHh-------------------------cCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhh
Q 007648 290 DSYSQFEEIMVSAKM-------------------------AKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVL 344 (594)
Q Consensus 290 ~~~~~~e~~~~~~~l-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (594)
..|..||.......- +-+.... .++++..+.. +......+...+..++..+
T Consensus 176 ~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~---~~vp~~~T~~-e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 176 KDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNA---PAVPPKGTKD-EIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccC---CCCCCCCChH-HHHHHHHHHHHHHHHhcCC
Confidence 888888876432100 0000000 0122222111 1111112222333333111
Q ss_pred ccccccchhhHHHHHH-HHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CC--------------chhHHHHHH
Q 007648 345 NGFWLHDVKDVDLRLA-RLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GN--------------PTKQILTYT 407 (594)
Q Consensus 345 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~--------------~~~a~~~y~ 407 (594)
-...+...+..++. .|++ ++.--+.+++.|+.+..++. ++ .+++..+|+
T Consensus 252 --L~t~~~~~~~~Rv~yayeQ------------~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yE 317 (656)
T KOG1914|consen 252 --LRTLDGTMLTRRVMYAYEQ------------CLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYE 317 (656)
T ss_pred --cccccccHHHHHHHHHHHH------------HHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHH
Confidence 11011111111111 2444 56667889999999887764 12 678999999
Q ss_pred HHHhccCCCcccCCchHHHHHHHHHHHhcCC---HHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHH
Q 007648 408 EAVRTVDPMKAVGKPHTLWVAFAKLYETYKD---IANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELM 484 (594)
Q Consensus 408 ~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 484 (594)
++|...... ...++..++++++...+ .+..-.++++++.+.-.++ .-+|+.+..+-.+..+++.||.+|
T Consensus 318 r~I~~l~~~-----~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~---tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 318 RAIEGLLKE-----NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL---TLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHH-----HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC---ceehhHHHHHHHHhhhHHHHHHHH
Confidence 999854321 45678888888875444 7888888999988765555 136888888888888899999999
Q ss_pred HHHhcCCch--hH---hhhhhc--cCChhhhHH--------hhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhc--cCC
Q 007648 485 RRATAEPSV--EV---RRRVAA--DGNEPVQMK--------LHKSLRLWTFYVDLEESLGNLESTRAVYERILDL--RIA 547 (594)
Q Consensus 485 ~~al~~~p~--~~---~~~~~~--~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~ 547 (594)
.+|=+..-. .. -.++++ .++....-+ ..+++.+-..|++++..+|+-+.||.+|+|++.. .|+
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 988765432 22 122331 122222222 2268888999999999999999999999999997 443
Q ss_pred c-hHHHHHHHHHHHHhchhhhhh
Q 007648 548 T-PQIIINYALLLEVWTLLHVFL 569 (594)
Q Consensus 548 ~-~~~~~~~~~~~~~~g~~~~a~ 569 (594)
. ..+|..+..++.+-|+.+.++
T Consensus 470 ks~~Iw~r~l~yES~vGdL~si~ 492 (656)
T KOG1914|consen 470 KSKEIWDRMLEYESNVGDLNSIL 492 (656)
T ss_pred hhHHHHHHHHHHHHhcccHHHHH
Confidence 3 379999999999999988876
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=1e-16 Score=175.93 Aligned_cols=440 Identities=8% Similarity=-0.031 Sum_probs=269.2
Q ss_pred CCCCHH-HHHHHHHHHHcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCC
Q 007648 23 NPFSLK-LWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKM 101 (594)
Q Consensus 23 ~P~~~~-~w~~~~~~~~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~ 101 (594)
.|...+ .+...+...+.|++..|+..|+++++.+|.++.....++... ...|+.++|+..+++++.-.|.+
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~--------~~~G~~~~A~~~~eka~~p~n~~ 101 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIA--------GWAGRDQEVIDVYERYQSSMNIS 101 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHH--------HHcCCcHHHHHHHHHhccCCCCC
Confidence 344443 344444455689999999999999999998853322555544 23478889999999998434455
Q ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHHHH--HH
Q 007648 102 PRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFI--EF 179 (594)
Q Consensus 102 ~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~--~~ 179 (594)
.......+..+..+|++++|..+|+++++..|.+ ..++..++......++. ++|++.++++.+.+|++..... .+
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n--~~~l~gLa~~y~~~~q~-~eAl~~l~~l~~~dp~~~~~l~layL 178 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPTN--PDLISGMIMTQADAGRG-GVVLKQATELAERDPTVQNYMTLSYL 178 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHhhcCCH-HHHHHHHHHhcccCcchHHHHHHHHH
Confidence 5555555778888899999999999999999986 67776666666677888 8999999999998888665322 33
Q ss_pred HHhcccHHHHHHHHHHhhc-CcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchh---HHHHHHH
Q 007648 180 LVKSKLWQEAAERLASVLN-DDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEV---GRLWTSL 255 (594)
Q Consensus 180 ~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~l 255 (594)
+...++..+|+..|++++. +|.. .+.+..+...+...+-. ..-.+....+|+-+ ...|+..
T Consensus 179 ~~~~~~~~~AL~~~ekll~~~P~n--------~e~~~~~~~~l~~~~~~-------~~a~~l~~~~p~~f~~~~~~~l~~ 243 (822)
T PRK14574 179 NRATDRNYDALQASSEAVRLAPTS--------EEVLKNHLEILQRNRIV-------EPALRLAKENPNLVSAEHYRQLER 243 (822)
T ss_pred HHhcchHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCc-------HHHHHHHHhCccccCHHHHHHHHH
Confidence 3345666668888888884 3332 23344444444333211 00111222233210 1122221
Q ss_pred HHHH--HHhc------------cHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccC
Q 007648 256 ADYY--IRRE------------LFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHG 321 (594)
Q Consensus 256 a~~~--~~~g------------~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (594)
...- ++.+ -.+.|.+-++..++..+..+.....|.. +.+..-. ++.
T Consensus 244 ~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~-~~~Drl~---aL~---------------- 303 (822)
T PRK14574 244 DAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQR-ARIDRLG---ALL---------------- 303 (822)
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHH-HHHHHHH---HHH----------------
Confidence 1111 1111 1244555555555533332221122211 0000000 000
Q ss_pred CcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhc-cCCCChHHHHHHHHHhcCCch
Q 007648 322 SAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLR-QNPHNVEQWHRRVKIFEGNPT 400 (594)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~p~~~~~~~~~~~~~~~~~~ 400 (594)
..+.....+..|+.+- +.. .-|..+..|..=+.+..++++
T Consensus 304 -----------------------------~r~r~~~vi~~y~~l~----------~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 304 -----------------------------VRHQTADLIKEYEAME----------AEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred -----------------------------HhhhHHHHHHHHHHhh----------hcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 0011122233343320 111 225555666555555568899
Q ss_pred hHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC------------CChhhHHHHHHHHH
Q 007648 401 KQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNY------------KTVDHLASIWCEWA 468 (594)
Q Consensus 401 ~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p------------~~~~~~~~~~~~~~ 468 (594)
+|..+|++++..-++.............+...+...+++++|..++++..+..| .|+ .........+
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~-d~~~~~~l~a 423 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND-DWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc-cHHHHHHHHH
Confidence 999999998774322111101111123333345578999999999999888655 222 2225556667
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCc
Q 007648 469 EMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT 548 (594)
Q Consensus 469 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~ 548 (594)
..+.-.|++++|.+.+++.+...|. ++.+++.+++++...|.+.+|.+.++++..+.|++
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~aP~--------------------n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~ 483 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSSTAPA--------------------NQNLRIALASIYLARDLPRKAEQELKAVESLAPRS 483 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC--------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc
Confidence 7777789999999999999999995 66888999999999999999999999989999999
Q ss_pred hHHHHHHHHHHHHhchhhhh
Q 007648 549 PQIIINYALLLEVWTLLHVF 568 (594)
Q Consensus 549 ~~~~~~~~~~~~~~g~~~~a 568 (594)
..+....+......|++.+|
T Consensus 484 ~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 484 LILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHHHHHHHHHHhhhhHHHH
Confidence 99999999999999998888
No 27
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=8.8e-18 Score=163.94 Aligned_cols=405 Identities=13% Similarity=0.107 Sum_probs=255.5
Q ss_pred cCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccH
Q 007648 39 EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFI 118 (594)
Q Consensus 39 ~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~ 118 (594)
++.++.|++.|..|+..+|+.+-.+...+.-. ...|+++++++...+||+++|+.+++...-+......|++
T Consensus 128 ~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY--------~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~ 199 (606)
T KOG0547|consen 128 NKKYDEAIKYYTQAIELCPDEPIFYSNRAACY--------ESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKF 199 (606)
T ss_pred cccHHHHHHHHHHHHhcCCCCchhhhhHHHHH--------HHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccH
Confidence 47888999999999999997655555444332 3448889999999999999999999888888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHh-----hCCCCHH--HHHHHHHh------cc-
Q 007648 119 TKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLK-----YDPSHIE--DFIEFLVK------SK- 184 (594)
Q Consensus 119 ~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~-----~~p~~~~--~~~~~~~~------~~- 184 (594)
++|..-.. ++.+....+...+-...-..+. +.|.+.....++ +-|+... .|...... ..
T Consensus 200 ~eal~D~t-v~ci~~~F~n~s~~~~~eR~Lk------k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 200 DEALFDVT-VLCILEGFQNASIEPMAERVLK------KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred HHHHHhhh-HHHHhhhcccchhHHHHHHHHH------HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 87754332 3333332211222222212221 222322222232 2232221 11111000 00
Q ss_pred ------cHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhccc-cc---ccCcHHHHHHHHHhhccchhHHHHHH
Q 007648 185 ------LWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHAT-EI---SGLNVDAIIRGGIRKFTDEVGRLWTS 254 (594)
Q Consensus 185 ------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~p~~~~~~~~~ 254 (594)
...++.+.+.... +.. +....+....... .. ..-+.+.-+ .........
T Consensus 273 ~~ksDa~l~~~l~~l~~~~-~e~------------Y~~a~~~~te~~~~~~~~~~~n~~d~~l--------e~~A~al~~ 331 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGL-EEG------------YLKAYDKATEECLGSESSLSVNEIDAEL--------EYMAEALLL 331 (606)
T ss_pred CccchhhHHHHHHHHHhhC-chh------------HHHHHHHHHHHhhhhhhhccccccchhH--------HHHHHHHHH
Confidence 0111111111111 000 0000000000000 00 000000000 011345666
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhh
Q 007648 255 LADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNL 334 (594)
Q Consensus 255 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (594)
-|.++.-.|+...|..-|+.++...|....+ .++.+.....+..
T Consensus 332 ~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~----------------------------------- 375 (606)
T KOG0547|consen 332 RGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQ----------------------------------- 375 (606)
T ss_pred hhhhhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhc-----------------------------------
Confidence 6778888899999999999999999887641 2222222221110
Q ss_pred hHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHh--cCCchhHHHHHHHHHhc
Q 007648 335 SMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRT 412 (594)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~ 412 (594)
-.+....|.+ +.+.||.|++.++-.|++. .++++.|..-|++|+..
T Consensus 376 --------------------~~~~~~~F~~------------A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 376 --------------------SEKMWKDFNK------------AEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL 423 (606)
T ss_pred --------------------cHHHHHHHHH------------HHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 0111234555 5889999999999888765 48999999999999995
Q ss_pred cCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCc
Q 007648 413 VDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS 492 (594)
Q Consensus 413 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 492 (594)
+|. ....++.++....+++.++++...|+.+.+..|+.| +++..+++++.-+++++.|.+.|..|+.+.|
T Consensus 424 -~pe-----~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~----Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 424 -DPE-----NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCP----EVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred -Chh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc----hHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 564 467788888888899999999999999999999999 9999999999999999999999999999999
Q ss_pred hhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHH-hCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhhhc
Q 007648 493 VEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEES-LGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFLLH 571 (594)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~~~ 571 (594)
.. ..++.++..+++-+-+..+ .++++.|.+++++|++++|..-.++..+|.+..++|+.++|++.
T Consensus 494 ~~--------------~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAiel 559 (606)
T KOG0547|consen 494 RE--------------HLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIEL 559 (606)
T ss_pred cc--------------ccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 41 1111122222222222222 38999999999999999999999999999999999999999854
No 28
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.84 E-value=3.9e-17 Score=164.88 Aligned_cols=418 Identities=16% Similarity=0.223 Sum_probs=269.9
Q ss_pred HHhhCCCCHHHHHHHHHHH-HcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHh
Q 007648 19 ELLRNPFSLKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVT 97 (594)
Q Consensus 19 ~l~~~P~~~~~w~~~~~~~-~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 97 (594)
.+..+..++++|..++..- ...+.+.++.+|..+|..+|.+...|..|+.++ ...|..+.+.++|+|++..
T Consensus 37 ~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E--------~klg~~~~s~~Vfergv~a 108 (577)
T KOG1258|consen 37 ILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYE--------YKLGNAENSVKVFERGVQA 108 (577)
T ss_pred ccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHH--------HHhhhHHHHHHHHHHHHHh
Confidence 3344444556665555532 235568999999999999999999999999999 4458899999999999999
Q ss_pred cCCChHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHH
Q 007648 98 MHKMPRIWIMYLETLTS-QKFITKARRTFDRALCALPVT-QHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIED 175 (594)
Q Consensus 98 ~P~~~~lw~~y~~~~~~-~~~~~~A~~~~~ral~~~p~~-~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~ 175 (594)
.|.|..+|+.|..+... .|+.+..|..|++|+..++.. .++.+|..|..++...++. .....+|++.++. |.+.
T Consensus 109 ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~-k~v~~iyeRilei-P~~~-- 184 (577)
T KOG1258|consen 109 IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSW-KRVANIYERILEI-PLHQ-- 184 (577)
T ss_pred hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccH-HHHHHHHHHHHhh-hhhH--
Confidence 99999999999999976 568899999999999998853 2479999999999888888 9999999998876 4432
Q ss_pred HHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhh-------ccchh
Q 007648 176 FIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRK-------FTDEV 248 (594)
Q Consensus 176 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~p~~~ 248 (594)
+..+ ..-|.+.+ ..++..+ -...+.+.+..... +....
T Consensus 185 ~~~~----------f~~f~~~l------------------------~~~~~~~-l~~~d~~~~l~~~~~~~~~~~~~~~~ 229 (577)
T KOG1258|consen 185 LNRH----------FDRFKQLL------------------------NQNEEKI-LLSIDELIQLRSDVAERSKITHSQEP 229 (577)
T ss_pred hHHH----------HHHHHHHH------------------------hcCChhh-hcCHHHHHHHhhhHHhhhhcccccCh
Confidence 1111 11111111 1111000 00001111000000 00000
Q ss_pred HHHHHHHHHHHHH-hccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhh
Q 007648 249 GRLWTSLADYYIR-RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDED 327 (594)
Q Consensus 249 ~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 327 (594)
.+.+-..+..-.. .+..+.+.....+.+..- ..+|+.....
T Consensus 230 ~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~------~~~~~~s~~~-------------------------------- 271 (577)
T KOG1258|consen 230 LEELEIGVKDSTDPSKSLTEEKTILKRIVSIH------EKVYQKSEEE-------------------------------- 271 (577)
T ss_pred hHHHHHHHhhccCccchhhHHHHHHHHHHHHH------HHHHHhhHhH--------------------------------
Confidence 0000000000000 011111211111111100 0111111111
Q ss_pred hHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CCchhHHHH
Q 007648 328 IRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILT 405 (594)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~ 405 (594)
...+..++..+.+.-+.+ --.++.+...|..+..+.. |+.+.+.-.
T Consensus 272 ----------------------------~~kr~~fE~~IkrpYfhv----kpl~~aql~nw~~yLdf~i~~g~~~~~~~l 319 (577)
T KOG1258|consen 272 ----------------------------EEKRWGFEEGIKRPYFHV----KPLDQAQLKNWRYYLDFEITLGDFSRVFIL 319 (577)
T ss_pred ----------------------------HHHHHhhhhhcccccccc----CcccHHHHHHHHHHhhhhhhcccHHHHHHH
Confidence 112344555544322211 1223455677888888774 899999999
Q ss_pred HHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-cCCChhhHHHHHHHHHHHHHhcCChHHHHHHH
Q 007648 406 YTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQV-NYKTVDHLASIWCEWAEMELRHKNFKGALELM 484 (594)
Q Consensus 406 y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 484 (594)
|++++..|.- +.++|+.|+.+....|+.+-|..++.++.++ .|+.| .+.+.++.++..+|++..|+.++
T Consensus 320 ~ercli~cA~------Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~----~i~L~~a~f~e~~~n~~~A~~~l 389 (577)
T KOG1258|consen 320 FERCLIPCAL------YDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTP----IIHLLEARFEESNGNFDDAKVIL 389 (577)
T ss_pred HHHHHhHHhh------hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCc----HHHHHHHHHHHhhccHHHHHHHH
Confidence 9999986543 8999999999999999999999999999995 78888 89999999999999999999999
Q ss_pred HHHhcCCchhH---hhhhh---ccCChhhhH---Hhh-------c----cHhhHHHHHHHHHH-hCChHHHHHHHHHHHh
Q 007648 485 RRATAEPSVEV---RRRVA---ADGNEPVQM---KLH-------K----SLRLWTFYVDLEES-LGNLESTRAVYERILD 543 (594)
Q Consensus 485 ~~al~~~p~~~---~~~~~---~~~~~~~~~---~~~-------~----~~~~~~~~~~~~~~-~g~~~~A~~~~~~al~ 543 (594)
++..+..|+.. ..++. -.++...+. .+. . -+.+...++.+-.. .++.+.|+.++.++++
T Consensus 390 q~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~ 469 (577)
T KOG1258|consen 390 QRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEAND 469 (577)
T ss_pred HHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 99998889632 12121 112222111 111 1 13344555554333 5788999999999999
Q ss_pred ccCCchHHHHHHHHHHHHhc
Q 007648 544 LRIATPQIIINYALLLEVWT 563 (594)
Q Consensus 544 ~~P~~~~~~~~~~~~~~~~g 563 (594)
..|++...|..+.++...++
T Consensus 470 ~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 470 ILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCCccHHHHHHHHHHHHhCC
Confidence 99999999999999988776
No 29
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=1.4e-17 Score=173.08 Aligned_cols=132 Identities=15% Similarity=0.067 Sum_probs=89.7
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCC
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~ 476 (594)
|++++|...|++++... |. ....++.+|.++...|++++|...|++++..+|.+. ..++..++..+...|+
T Consensus 194 ~~~~~A~~~~~~al~~~-p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 194 GDLDAARALLKKALAAD-PQ-----CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL---SEVLPKLMECYQALGD 264 (389)
T ss_pred CCHHHHHHHHHHHHhHC-cC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH---HHHHHHHHHHHHHcCC
Confidence 56677777777777643 32 356677777777777777777777777777766542 1455666666677777
Q ss_pred hHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHH
Q 007648 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556 (594)
Q Consensus 477 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~ 556 (594)
+++|...++++++..|+ + ..+..++.++.+.|++++|.+.++++++..|+++.....+.
T Consensus 265 ~~~A~~~l~~~~~~~p~--------------------~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~ 323 (389)
T PRK11788 265 EAEGLEFLRRALEEYPG--------------------A-DLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLD 323 (389)
T ss_pred HHHHHHHHHHHHHhCCC--------------------c-hHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 77777777777777773 1 33366777777777777777777777777777765443343
Q ss_pred HH
Q 007648 557 LL 558 (594)
Q Consensus 557 ~~ 558 (594)
..
T Consensus 324 ~~ 325 (389)
T PRK11788 324 YH 325 (389)
T ss_pred Hh
Confidence 33
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=8.3e-16 Score=168.89 Aligned_cols=438 Identities=10% Similarity=-0.018 Sum_probs=295.1
Q ss_pred CcchHhHHHHhhCCCCHHHHHHHHHHH-HcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHH
Q 007648 11 EDDLLYEEELLRNPFSLKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNN 89 (594)
Q Consensus 11 ~~~~~~e~~l~~~P~~~~~w~~~~~~~-~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~ 89 (594)
.+...|+..+..+|.+......++... ..|+.++|+..+++++...|.+...-...+... ...|++++|+.
T Consensus 52 ~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly--------~~~gdyd~Aie 123 (822)
T PRK14574 52 PVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY--------RNEKRWDQALA 123 (822)
T ss_pred HHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH--------HHcCCHHHHHH
Confidence 456788999999999953333777755 379999999999999944444444444334343 45699999999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhC
Q 007648 90 TFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYD 169 (594)
Q Consensus 90 ~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~ 169 (594)
+|+++++.+|+++.++..++..+...++.++|+..+++++...|.. ......+.+....++. .+|++.|+++++.+
T Consensus 124 ly~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~---~~~l~layL~~~~~~~-~~AL~~~ekll~~~ 199 (822)
T PRK14574 124 LWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTV---QNYMTLSYLNRATDRN-YDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch---HHHHHHHHHHHhcchH-HHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999974 2234444555455666 67999999999999
Q ss_pred CCCHHHH---HHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhh--c---cccccc---CcHHHHHH
Q 007648 170 PSHIEDF---IEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTT--H---ATEISG---LNVDAIIR 238 (594)
Q Consensus 170 p~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~--~---~~~~~~---~~~~~~~~ 238 (594)
|++.+.+ ...+...|-...|.++.++ .|+.+.. ....|.+.-..-.. . +..... ..+++.+.
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~---~p~~f~~----~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKE---NPNLVSA----EHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHh---CccccCH----HHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 9999754 3455667777777766543 2322211 11222221111111 0 100000 01222222
Q ss_pred ---HHHh---hccch---hHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCC
Q 007648 239 ---GGIR---KFTDE---VGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDL 309 (594)
Q Consensus 239 ---~~~~---~~p~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~ 309 (594)
..+. ..|.. ...+.+...-.+...|++.++++.|+..-......+.+...+-+-..+..
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~------------ 340 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDR------------ 340 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhc------------
Confidence 2233 22321 23345566667778889999999999876544333433222211111110
Q ss_pred CCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHH
Q 007648 310 SVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWH 389 (594)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~ 389 (594)
..-.++...|+.++...+ .....|.+.....
T Consensus 341 -------------------------------------------~~P~kA~~l~~~~~~~~~------~~~~~~~~~~~~~ 371 (822)
T PRK14574 341 -------------------------------------------RLPEKAAPILSSLYYSDG------KTFRNSDDLLDAD 371 (822)
T ss_pred -------------------------------------------CCcHHHHHHHHHHhhccc------cccCCCcchHHHH
Confidence 011224455666432211 0011222332122
Q ss_pred --HHHHHhcCCchhHHHHHHHHHhccCCCc---------ccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChh
Q 007648 390 --RRVKIFEGNPTKQILTYTEAVRTVDPMK---------AVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVD 458 (594)
Q Consensus 390 --~~~~~~~~~~~~a~~~y~~Ai~~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~ 458 (594)
.++.+..+++++|..+.++.....|+.. ....+.++....++.+.-.|++..|.+.+++.+...|.|+
T Consensus 372 ~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~- 450 (822)
T PRK14574 372 DLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQ- 450 (822)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-
Confidence 3344455899999999999887433110 1123567777788888889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHH
Q 007648 459 HLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVY 538 (594)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 538 (594)
.+++.++.++...|.+.+|.++++.+..++|. +..+....+.....+|++.+|..+.
T Consensus 451 ---~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~--------------------~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 451 ---NLRIALASIYLARDLPRKAEQELKAVESLAPR--------------------SLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc--------------------cHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99999999999999999999999999999995 4466667777778899999999999
Q ss_pred HHHHhccCCchHHH
Q 007648 539 ERILDLRIATPQII 552 (594)
Q Consensus 539 ~~al~~~P~~~~~~ 552 (594)
++.++.+|+++.+-
T Consensus 508 ~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 508 DDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHhhCCCchhHH
Confidence 99999999999654
No 31
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4e-16 Score=151.63 Aligned_cols=163 Identities=18% Similarity=0.223 Sum_probs=130.3
Q ss_pred hhccCCCChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 007648 377 LLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNY 454 (594)
Q Consensus 377 ~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p 454 (594)
+|++||....+|...|--+ .++...|++.|.+||+.+|. .-.+|+.+|+.|.-++-.-=|.-.|++|++..|
T Consensus 356 ALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~------DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP 429 (559)
T KOG1155|consen 356 ALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR------DYRAWYGLGQAYEIMKMHFYALYYFQKALELKP 429 (559)
T ss_pred HHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch------hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC
Confidence 3555555555555555433 26677788899999986554 458899999999988888889999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHH
Q 007648 455 KTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLEST 534 (594)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 534 (594)
.++ .+|..+|+++.+.++.++|++.|.+|+..... +..++..+++++.++++.++|
T Consensus 430 nDs----Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dt--------------------e~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 430 NDS----RLWVALGECYEKLNRLEEAIKCYKRAILLGDT--------------------EGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred Cch----HHHHHHHHHHHHhccHHHHHHHHHHHHhcccc--------------------chHHHHHHHHHHHHHHhHHHH
Confidence 998 89999999999999999999999999887652 347778889999999999999
Q ss_pred HHHHHHHHh-------ccCCchHHHHHHHHHHHHhchhhhhh
Q 007648 535 RAVYERILD-------LRIATPQIIINYALLLEVWTLLHVFL 569 (594)
Q Consensus 535 ~~~~~~al~-------~~P~~~~~~~~~~~~~~~~g~~~~a~ 569 (594)
...|++.++ ..|+...+..-++..+.+.+++++|-
T Consensus 486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As 527 (559)
T KOG1155|consen 486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEAS 527 (559)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHH
Confidence 999999998 44555566667888899999999885
No 32
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.80 E-value=3.1e-16 Score=162.90 Aligned_cols=290 Identities=11% Similarity=0.110 Sum_probs=210.2
Q ss_pred CchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHHHcCCchHH
Q 007648 80 THPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQ--HDRIWEIYLRFVEQEGIPIET 157 (594)
Q Consensus 80 ~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~--~~~~w~~~~~~~~~~~~~~~~ 157 (594)
..|++++|...|+++++.+|+++.+|..++.++..+|+++.|..++++++...+... ....+..++..+...|++ ++
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~-~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL-DR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH-HH
Confidence 347889999999999999999999999999999999999999999999987432221 124566677777788998 99
Q ss_pred HHHHHHHHHhhCCCCHH---HHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHH
Q 007648 158 SLRVYRRYLKYDPSHIE---DFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVD 234 (594)
Q Consensus 158 a~~~~~~~l~~~p~~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 234 (594)
|..+|+++++..|.+.. .++.++...|++++|...+++++... |... .
T Consensus 126 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------------------------~~~~---~-- 176 (389)
T PRK11788 126 AEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG------------------------GDSL---R-- 176 (389)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc------------------------CCcc---h--
Confidence 99999999998887664 33556777788888888777765210 0000 0
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCccc
Q 007648 235 AIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEE 314 (594)
Q Consensus 235 ~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~ 314 (594)
......+..+|..+...|++++|.+.|+++++..|+..
T Consensus 177 -----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------------------------------- 214 (389)
T PRK11788 177 -----------VEIAHFYCELAQQALARGDLDAARALLKKALAADPQCV------------------------------- 214 (389)
T ss_pred -----------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCH-------------------------------
Confidence 00123566677777778888888888888776554432
Q ss_pred ccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHH
Q 007648 315 EDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKI 394 (594)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~ 394 (594)
.++..++.+
T Consensus 215 -----------------------------------------------------------------------~~~~~la~~ 223 (389)
T PRK11788 215 -----------------------------------------------------------------------RASILLGDL 223 (389)
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 222222222
Q ss_pred h--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHH
Q 007648 395 F--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMEL 472 (594)
Q Consensus 395 ~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~ 472 (594)
+ .|++++|...|++++.. +|.. ...++..++..+...|++++|...++++++..|+.. .+..++..+.
T Consensus 224 ~~~~g~~~~A~~~~~~~~~~-~p~~----~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-----~~~~la~~~~ 293 (389)
T PRK11788 224 ALAQGDYAAAIEALERVEEQ-DPEY----LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD-----LLLALAQLLE 293 (389)
T ss_pred HHHCCCHHHHHHHHHHHHHH-Chhh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-----HHHHHHHHHH
Confidence 2 26788889999998875 3321 346778889999999999999999999999999774 3478888889
Q ss_pred hcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHH---hCChHHHHHHHHHHHh
Q 007648 473 RHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEES---LGNLESTRAVYERILD 543 (594)
Q Consensus 473 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~A~~~~~~al~ 543 (594)
+.|++++|..+++++++..|++ +. +..+...... .|+.+++...+++.++
T Consensus 294 ~~g~~~~A~~~l~~~l~~~P~~--------------------~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 294 EQEGPEAAQALLREQLRRHPSL--------------------RG-FHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HhCCHHHHHHHHHHHHHhCcCH--------------------HH-HHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 9999999999999999999952 22 2233333222 4577777777776665
No 33
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.79 E-value=2e-14 Score=141.51 Aligned_cols=128 Identities=23% Similarity=0.373 Sum_probs=112.8
Q ss_pred chHhHHHHhhCCCCHHHHHHHHHHHHc---------------------CChhHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 007648 13 DLLYEEELLRNPFSLKLWWRYLVAKRE---------------------APFKKRFVIYERALKALPGSYKLWHAYLIERL 71 (594)
Q Consensus 13 ~~~~e~~l~~~P~~~~~w~~~~~~~~~---------------------~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~ 71 (594)
+.-||..|.+.-.....+++||+++.. .-..++..+|.+|+..+|.++.+|..|+.++.
T Consensus 37 Rr~fE~kL~rr~~~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~lyr~at~rf~~D~~lW~~yi~f~k 116 (568)
T KOG2396|consen 37 RRDFELKLQRRTLSIEDFINYIQYEINLEELRAKRRKKKRVKYSFSDDSIPNRIVFLYRRATNRFNGDVKLWLSYIAFCK 116 (568)
T ss_pred HHHHHHHHccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 456889999988999999999999841 22468889999999999999999999999985
Q ss_pred HhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccc-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007648 72 SIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKF-ITKARRTFDRALCALPVTQHDRIWEIYLRFVEQ 150 (594)
Q Consensus 72 ~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~-~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~ 150 (594)
+. +.+-+...+|.+++..+|++|.+|+..+.++...+. ++.||.+|.|+|+.+|.+ +.+|..|..++..
T Consensus 117 k~--------~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npds--p~Lw~eyfrmEL~ 186 (568)
T KOG2396|consen 117 KK--------KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDS--PKLWKEYFRMELM 186 (568)
T ss_pred Hh--------cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHH
Confidence 54 446788899999999999999999999999988664 999999999999999987 8999999999853
No 34
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.79 E-value=3e-15 Score=166.72 Aligned_cols=445 Identities=12% Similarity=0.095 Sum_probs=299.2
Q ss_pred HHHHHHHHHH-HcCChhHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHh--cCCCh
Q 007648 28 KLWWRYLVAK-REAPFKKRFVIYERALKALP--GSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVT--MHKMP 102 (594)
Q Consensus 28 ~~w~~~~~~~-~~~~~~~a~~~~e~al~~~P--~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~P~~~ 102 (594)
..|...+... ..|+++.|..+|+......| .+...+...+... ...++.+.+..++..+++. .| ++
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~--------~~~~~~~~a~~l~~~m~~~g~~~-~~ 158 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEAC--------IALKSIRCVKAVYWHVESSGFEP-DQ 158 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH--------HhCCCHHHHHHHHHHHHHhCCCc-ch
Confidence 4788888855 47999999999999887543 3556666666654 4457888999999999875 35 57
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCC--CCHH--HHHH
Q 007648 103 RIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDP--SHIE--DFIE 178 (594)
Q Consensus 103 ~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p--~~~~--~~~~ 178 (594)
..+..++.++.+.|+++.|+++|++..+ |+ ...|..+...+...|+. ++|.++|++.++..+ +... .++.
T Consensus 159 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~~---~~t~n~li~~~~~~g~~-~~A~~lf~~M~~~g~~p~~~t~~~ll~ 232 (697)
T PLN03081 159 YMMNRVLLMHVKCGMLIDARRLFDEMPE--RN---LASWGTIIGGLVDAGNY-REAFALFREMWEDGSDAEPRTFVVMLR 232 (697)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhcCCC--CC---eeeHHHHHHHHHHCcCH-HHHHHHHHHHHHhCCCCChhhHHHHHH
Confidence 8999999999999999999999998643 43 46788888888888998 999999999887543 2221 3345
Q ss_pred HHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHH
Q 007648 179 FLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADY 258 (594)
Q Consensus 179 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~ 258 (594)
.+...|....+.+++..++...- ......+..+++.....++. ..+..++++. +......|..+...
T Consensus 233 a~~~~~~~~~~~~l~~~~~~~g~------~~d~~~~n~Li~~y~k~g~~---~~A~~vf~~m----~~~~~vt~n~li~~ 299 (697)
T PLN03081 233 ASAGLGSARAGQQLHCCVLKTGV------VGDTFVSCALIDMYSKCGDI---EDARCVFDGM----PEKTTVAWNSMLAG 299 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhCC------CccceeHHHHHHHHHHCCCH---HHHHHHHHhC----CCCChhHHHHHHHH
Confidence 55667788888887766653110 00112344444444443321 1122333322 11124678889999
Q ss_pred HHHhccHHHHHHHHHHHHhh--hccccchHHHHHHHHHHHH---HHHHH-HhcCCCCCCcccccccccCCcchhhhHhhh
Q 007648 259 YIRRELFEKARDIFEEGMMT--VVTVRDFSVIFDSYSQFEE---IMVSA-KMAKPDLSVEEEEDDEEHGSAEDEDIRLDV 332 (594)
Q Consensus 259 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~l~~~~~~~e~---~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (594)
|.+.|+.++|.++|++.... .|+...+..+...+..... ...-. .+.+.+-.... .+ +
T Consensus 300 y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~-------------~~---~ 363 (697)
T PLN03081 300 YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI-------------VA---N 363 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe-------------ee---h
Confidence 99999999999999888764 3444444444444433221 11000 00001100000 00 1
Q ss_pred hhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHH
Q 007648 333 NLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAV 410 (594)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai 410 (594)
...+..+- ..+.++.+...|+++ .. .|...|..++..+. |+.++|.++|++..
T Consensus 364 ~~Li~~y~----------k~G~~~~A~~vf~~m------------~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 364 TALVDLYS----------KWGRMEDARNVFDRM------------PR---KNLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred HHHHHHHH----------HCCCHHHHHHHHHhC------------CC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11111111 123456667777663 21 35678888877763 78999999999977
Q ss_pred hc-cCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 007648 411 RT-VDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATA 489 (594)
Q Consensus 411 ~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 489 (594)
.. +.| ....+..+...+...|..++|..+|+...+..+-.|.. ..|..++..+.+.|++++|.+++++. .
T Consensus 419 ~~g~~P------d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~--~~y~~li~~l~r~G~~~eA~~~~~~~-~ 489 (697)
T PLN03081 419 AEGVAP------NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA--MHYACMIELLGREGLLDEAYAMIRRA-P 489 (697)
T ss_pred HhCCCC------CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc--cchHhHHHHHHhcCCHHHHHHHHHHC-C
Confidence 63 344 34556677777778899999999999987643222211 35666777778899999999998764 3
Q ss_pred CCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhh
Q 007648 490 EPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFL 569 (594)
Q Consensus 490 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~ 569 (594)
..| +...|..++......|+++.|..++++.++..|+++..+..++..|.+.|++++|.
T Consensus 490 ~~p---------------------~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 490 FKP---------------------TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred CCC---------------------CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 344 45779999999999999999999999999999999999999999999999999997
Q ss_pred hc
Q 007648 570 LH 571 (594)
Q Consensus 570 ~~ 571 (594)
+.
T Consensus 549 ~v 550 (697)
T PLN03081 549 KV 550 (697)
T ss_pred HH
Confidence 44
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4.1e-16 Score=151.59 Aligned_cols=323 Identities=17% Similarity=0.143 Sum_probs=222.8
Q ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHHH---
Q 007648 100 KMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDF--- 176 (594)
Q Consensus 100 ~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~--- 176 (594)
.++-+.+.+|-++.+.|..+.|+..|..++...|.+ |.++..+.....+. .........-|.+..-.
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~-----W~AWleL~~lit~~-----e~~~~l~~~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWF-----WSAWLELSELITDI-----EILSILVVGLPSDMHWMKKF 231 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcc-----hHHHHHHHHhhchH-----HHHHHHHhcCcccchHHHHH
Confidence 456677778888888999999999999999988975 66666554432222 22222222234332111
Q ss_pred --HHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHH
Q 007648 177 --IEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTS 254 (594)
Q Consensus 177 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 254 (594)
...+......++++.-++..+. ..+|.+ .-+-..
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~-------------------------------------------~gf~~~-~~i~~~ 267 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSS-------------------------------------------VGFPNS-MYIKTQ 267 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-------------------------------------------ccCCcc-HHHHHH
Confidence 1222222233334333333221 113322 233344
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhh
Q 007648 255 LADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNL 334 (594)
Q Consensus 255 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (594)
.|...-.+.|+++|..+|++.++.+|-.-+...+|.-.+.......
T Consensus 268 ~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s---------------------------------- 313 (559)
T KOG1155|consen 268 IAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS---------------------------------- 313 (559)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH----------------------------------
Confidence 4556667889999999999999998875543333322221111100
Q ss_pred hHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHh--cCCchhHHHHHHHHHhc
Q 007648 335 SMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRT 412 (594)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~ 412 (594)
.....+... ...+.--++..--.|..+ .++.++|+..|++|++.
T Consensus 314 ------------------kLs~LA~~v----------------~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL 359 (559)
T KOG1155|consen 314 ------------------KLSYLAQNV----------------SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL 359 (559)
T ss_pred ------------------HHHHHHHHH----------------HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc
Confidence 000001111 111211222222233333 26789999999999996
Q ss_pred cCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCc
Q 007648 413 VDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS 492 (594)
Q Consensus 413 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 492 (594)
+|. +..+|.-+|.=+..+++...|++.|++|+.++|.+- ..|+.+|+.+.-++-.-=|.-.|++|++..|
T Consensus 360 -Np~-----~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy----RAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP 429 (559)
T KOG1155|consen 360 -NPK-----YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY----RAWYGLGQAYEIMKMHFYALYYFQKALELKP 429 (559)
T ss_pred -Ccc-----hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH----HHHhhhhHHHHHhcchHHHHHHHHHHHhcCC
Confidence 442 789999999999999999999999999999999998 9999999999888988999999999999999
Q ss_pred hhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhhhcc
Q 007648 493 VEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFLLHV 572 (594)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~~~~ 572 (594)
+ |+.+|..+|+.|.++++.++|+++|.+|+...-.+..++..+|.++.+.++.++|-..|
T Consensus 430 n--------------------DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~y 489 (559)
T KOG1155|consen 430 N--------------------DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYY 489 (559)
T ss_pred C--------------------chHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5 78999999999999999999999999999998888899999999999999999997555
Q ss_pred cC
Q 007648 573 PF 574 (594)
Q Consensus 573 ~~ 574 (594)
.+
T Consensus 490 ek 491 (559)
T KOG1155|consen 490 EK 491 (559)
T ss_pred HH
Confidence 43
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.78 E-value=1.1e-18 Score=172.17 Aligned_cols=129 Identities=21% Similarity=0.235 Sum_probs=100.8
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhc
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 501 (594)
.+.+|..+|.++.+.|+.++|+.+|++|++.+|+++ .++..++.++...|+.+++++++++..+..|+
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~----~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~-------- 212 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDP----DARNALAWLLIDMGDYDEAREALKRLLKAAPD-------- 212 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H----HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT--------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC--------
Confidence 578899999999999999999999999999999999 88888888888899999999999888877773
Q ss_pred cCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhhhcccC
Q 007648 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFLLHVPF 574 (594)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 574 (594)
++.+|..++..+..+|++++|+.+|+++++.+|++|.+..+++.++.+.|+.++|...+..
T Consensus 213 ------------~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 213 ------------DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp ------------SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------------
T ss_pred ------------HHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6688999999999999999999999999999999999999999999999999999876654
No 37
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.77 E-value=5.2e-15 Score=149.65 Aligned_cols=378 Identities=20% Similarity=0.229 Sum_probs=257.4
Q ss_pred chHhHHHHhhCCCCHHHHHHHHHHHH-cCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHH
Q 007648 13 DLLYEEELLRNPFSLKLWWRYLVAKR-EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTF 91 (594)
Q Consensus 13 ~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 91 (594)
+..+-..|.+.|.+...|.+|+.++. -|..+.+.++|+|+++..|.|+++|..|..+.. ...|+-+..+..|
T Consensus 65 r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~-------n~~~d~~~lr~~f 137 (577)
T KOG1258|consen 65 REVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLK-------NNNGDPETLRDLF 137 (577)
T ss_pred HHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-------ccCCCHHHHHHHH
Confidence 56677788999999999999999986 699999999999999999999999999999862 3568888899999
Q ss_pred HHHHHhc---CCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH-----cCCchHHHHHHHH
Q 007648 92 ERALVTM---HKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQ-----EGIPIETSLRVYR 163 (594)
Q Consensus 92 ~~al~~~---P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~-----~~~~~~~a~~~~~ 163 (594)
++|+... -.|..+|..|++++..+++......+|+|.++ +|...-......+..+... +... +.+.+.=.
T Consensus 138 e~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile-iP~~~~~~~f~~f~~~l~~~~~~~l~~~-d~~~~l~~ 215 (577)
T KOG1258|consen 138 ERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE-IPLHQLNRHFDRFKQLLNQNEEKILLSI-DELIQLRS 215 (577)
T ss_pred HHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh-hhhhHhHHHHHHHHHHHhcCChhhhcCH-HHHHHHhh
Confidence 9999985 46889999999999999999999999999998 6864333444444444432 1111 22221111
Q ss_pred HHH-------------------hh--CCCCH--H---HH-------HHHHHhcccHHHHHHHHHHhhcCcccc-cccccc
Q 007648 164 RYL-------------------KY--DPSHI--E---DF-------IEFLVKSKLWQEAAERLASVLNDDQFY-SIKGKT 209 (594)
Q Consensus 164 ~~l-------------------~~--~p~~~--~---~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 209 (594)
... +. .|... + .. -+++.......+.+-.|+..+..|.|. .+....
T Consensus 216 ~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~a 295 (577)
T KOG1258|consen 216 DVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQA 295 (577)
T ss_pred hHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHH
Confidence 111 00 01111 0 00 022333344455666777777666653 223344
Q ss_pred hHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHH
Q 007648 210 KHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIF 289 (594)
Q Consensus 210 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~ 289 (594)
+...|..|+++....++. ...--++++++..+.. +.++|+.++.+....|+.+-|..++.++.+....... .+.
T Consensus 296 ql~nw~~yLdf~i~~g~~---~~~~~l~ercli~cA~-Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~--~i~ 369 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDF---SRVFILFERCLIPCAL-YDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTP--IIH 369 (577)
T ss_pred HHHHHHHHhhhhhhcccH---HHHHHHHHHHHhHHhh-hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCc--HHH
Confidence 678999999998877653 1223456677766543 3679999999999999999999999998876433222 344
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhc
Q 007648 290 DSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRR 369 (594)
Q Consensus 290 ~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (594)
..+..|++.+. ....+...|+..
T Consensus 370 L~~a~f~e~~~-----------------------------------------------------n~~~A~~~lq~i---- 392 (577)
T KOG1258|consen 370 LLEARFEESNG-----------------------------------------------------NFDDAKVILQRI---- 392 (577)
T ss_pred HHHHHHHHhhc-----------------------------------------------------cHHHHHHHHHHH----
Confidence 44555665431 122244455553
Q ss_pred hhhhhhhhhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhc-cCCCcccCCchHHHHHHHHHHH-hcCCHHHHHHH
Q 007648 370 PELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRT-VDPMKAVGKPHTLWVAFAKLYE-TYKDIANARVI 445 (594)
Q Consensus 370 ~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~-~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~ 445 (594)
...-|+.+.+-...+..+. |+.+.+.. +...++. .+.....+....+++.++.+.. -.++.+.|+.+
T Consensus 393 --------~~e~pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~ 463 (577)
T KOG1258|consen 393 --------ESEYPGLVEVVLRKINWERRKGNLEDANY-KNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARII 463 (577)
T ss_pred --------HhhCCchhhhHHHHHhHHHHhcchhhhhH-HHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3333777766666555543 56665553 2222322 2332233556788888888866 57899999999
Q ss_pred HHHHHhccCCChhhHHHHHHHHHHHHHhcC
Q 007648 446 FDKAVQVNYKTVDHLASIWCEWAEMELRHK 475 (594)
Q Consensus 446 ~~kal~~~p~~~~~~~~~~~~~~~~~~~~~ 475 (594)
+.+++...|.+. .+|..+..++...+
T Consensus 464 l~~~~~~~~~~k----~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 464 LLEANDILPDCK----VLYLELIRFELIQP 489 (577)
T ss_pred HHHhhhcCCccH----HHHHHHHHHHHhCC
Confidence 999999999998 89999999876554
No 38
>PLN03077 Protein ECB2; Provisional
Probab=99.76 E-value=9.1e-15 Score=166.75 Aligned_cols=444 Identities=9% Similarity=0.061 Sum_probs=303.5
Q ss_pred CHHHHHHHHHHH-HcCChhHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhc-CCC
Q 007648 26 SLKLWWRYLVAK-REAPFKKRFVIYERALKA--LPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTM-HKM 101 (594)
Q Consensus 26 ~~~~w~~~~~~~-~~~~~~~a~~~~e~al~~--~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-P~~ 101 (594)
|.-.|..+|... +.|++++|..+|++.... .|+ .-.+...+... ...|+.+.+.+++..+++.. +-+
T Consensus 252 d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd-~~ty~~ll~a~--------~~~g~~~~a~~l~~~~~~~g~~~d 322 (857)
T PLN03077 252 DCISWNAMISGYFENGECLEGLELFFTMRELSVDPD-LMTITSVISAC--------ELLGDERLGREMHGYVVKTGFAVD 322 (857)
T ss_pred CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHH--------HhcCChHHHHHHHHHHHHhCCccc
Confidence 445666666633 467777777777777653 343 23333333332 44688899999999999863 456
Q ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhh--CCCCHH--HHH
Q 007648 102 PRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKY--DPSHIE--DFI 177 (594)
Q Consensus 102 ~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~--~p~~~~--~~~ 177 (594)
+.++..++..+.+.|+++.|+++|++... |+ ...|..+...+...|+. ++|.++|++..+. .|+... .++
T Consensus 323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d---~~s~n~li~~~~~~g~~-~~A~~lf~~M~~~g~~Pd~~t~~~ll 396 (857)
T PLN03077 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMET--KD---AVSWTAMISGYEKNGLP-DKALETYALMEQDNVSPDEITIASVL 396 (857)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC---eeeHHHHHHHHHhCCCH-HHHHHHHHHHHHhCCCCCceeHHHHH
Confidence 78999999999999999999999998642 43 35799888888889999 9999999987654 466552 445
Q ss_pred HHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHH
Q 007648 178 EFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLAD 257 (594)
Q Consensus 178 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~ 257 (594)
..+...|++++|.++++.+++... ......+..+++...+.++. ..+..++++... ++ ...|..+..
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~g~------~~~~~~~n~Li~~y~k~g~~---~~A~~vf~~m~~--~d--~vs~~~mi~ 463 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERKGL------ISYVVVANALIEMYSKCKCI---DKALEVFHNIPE--KD--VISWTSIIA 463 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHhCC------CcchHHHHHHHHHHHHcCCH---HHHHHHHHhCCC--CC--eeeHHHHHH
Confidence 667788999999999998884211 11234555565555544431 122334443322 22 357999999
Q ss_pred HHHHhccHHHHHHHHHHHHhh-hccccchHHHHHHHHHHHHHH-----HHHHhcCCCCCCcccccccccCCcchhhhHhh
Q 007648 258 YYIRRELFEKARDIFEEGMMT-VVTVRDFSVIFDSYSQFEEIM-----VSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLD 331 (594)
Q Consensus 258 ~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~l~~~~~~~e~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (594)
.+.+.|+.++|..+|++.+.. .|+...+..+..++.....-. ....++ .+-.... .
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~-------------~---- 525 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFDG-------------F---- 525 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCccc-------------e----
Confidence 999999999999999999865 344444444444443322110 000111 0100000 0
Q ss_pred hhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHh--cCCchhHHHHHHHH
Q 007648 332 VNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEA 409 (594)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~y~~A 409 (594)
.... +...+. ..+.+..+...|++ . +.|...|..++..+ .|+.++|..+|++.
T Consensus 526 ~~na---Li~~y~------k~G~~~~A~~~f~~-------------~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 526 LPNA---LLDLYV------RCGRMNYAWNQFNS-------------H---EKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred echH---HHHHHH------HcCCHHHHHHHHHh-------------c---CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 0001 111110 12345555555554 2 56788999888777 38999999999998
Q ss_pred Hhc-cCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 007648 410 VRT-VDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRAT 488 (594)
Q Consensus 410 i~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 488 (594)
... +.|+ ...+..+...+.+.|..++|..+|++..+..+-.|.. ..|..++..+.+.|++++|.+++++.
T Consensus 581 ~~~g~~Pd------~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~--~~y~~lv~~l~r~G~~~eA~~~~~~m- 651 (857)
T PLN03077 581 VESGVNPD------EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL--KHYACVVDLLGRAGKLTEAYNFINKM- 651 (857)
T ss_pred HHcCCCCC------cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch--HHHHHHHHHHHhCCCHHHHHHHHHHC-
Confidence 763 3443 2334555556778999999999999988543333311 56777788888999999999999875
Q ss_pred cCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhh
Q 007648 489 AEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVF 568 (594)
Q Consensus 489 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a 568 (594)
...| ++.+|..++......|+.+.+....++.+++.|+++..++.++.+|...|++++|
T Consensus 652 ~~~p---------------------d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a 710 (857)
T PLN03077 652 PITP---------------------DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEV 710 (857)
T ss_pred CCCC---------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHH
Confidence 4556 4688999999998899999999999999999999999999999999999999999
Q ss_pred hh
Q 007648 569 LL 570 (594)
Q Consensus 569 ~~ 570 (594)
.+
T Consensus 711 ~~ 712 (857)
T PLN03077 711 AR 712 (857)
T ss_pred HH
Confidence 63
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=5.7e-16 Score=157.47 Aligned_cols=212 Identities=13% Similarity=0.208 Sum_probs=176.2
Q ss_pred hhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccc-chHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccc
Q 007648 242 RKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVR-DFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEH 320 (594)
Q Consensus 242 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~ 320 (594)
...|+. ++.|-.+|.+|.-+++.+.|++.|+||++.+|... .+..+...++.
T Consensus 415 ~~~~~s-PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~-------------------------- 467 (638)
T KOG1126|consen 415 DTDPNS-PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIA-------------------------- 467 (638)
T ss_pred hhCCCC-cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhh--------------------------
Confidence 334443 78999999999999999999999999999998654 11111111111
Q ss_pred CCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CC
Q 007648 321 GSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GN 398 (594)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~ 398 (594)
...++.++..|.. +|+.+|.+..+|+.+|.++. ++
T Consensus 468 -------------------------------~ee~d~a~~~fr~------------Al~~~~rhYnAwYGlG~vy~Kqek 504 (638)
T KOG1126|consen 468 -------------------------------TEEFDKAMKSFRK------------ALGVDPRHYNAWYGLGTVYLKQEK 504 (638)
T ss_pred -------------------------------hHHHHhHHHHHHh------------hhcCCchhhHHHHhhhhheeccch
Confidence 1124445667777 68999999999999999996 67
Q ss_pred chhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChH
Q 007648 399 PTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFK 478 (594)
Q Consensus 399 ~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 478 (594)
++.|.-.|++|+.+ .|. ...+...+|.++.+.|+.++|..+|++|+..+|.+| ---+..+.++...++++
T Consensus 505 ~e~Ae~~fqkA~~I-NP~-----nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~----l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 505 LEFAEFHFQKAVEI-NPS-----NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP----LCKYHRASILFSLGRYV 574 (638)
T ss_pred hhHHHHHHHhhhcC-Ccc-----chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc----hhHHHHHHHHHhhcchH
Confidence 99999999999996 553 466788999999999999999999999999999999 66777888888999999
Q ss_pred HHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHH
Q 007648 479 GALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIII 553 (594)
Q Consensus 479 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~ 553 (594)
+|...+++.-+..|+ +..++...+.++.++|+.+.|+.-|.=|+.++|.-.++-+
T Consensus 575 eal~~LEeLk~~vP~--------------------es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i~~ 629 (638)
T KOG1126|consen 575 EALQELEELKELVPQ--------------------ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQIQI 629 (638)
T ss_pred HHHHHHHHHHHhCcc--------------------hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchhhH
Confidence 999999999999995 5678889999999999999999999999999998877443
No 40
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=5.7e-15 Score=154.63 Aligned_cols=346 Identities=17% Similarity=0.154 Sum_probs=225.7
Q ss_pred chhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHH
Q 007648 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLR 160 (594)
Q Consensus 81 ~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~ 160 (594)
.|++++|..++..+++.+|.++..|..++.++..+|+++++...+--|-.++|.+ .+.|..+..+...+|+. .+|+-
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d--~e~W~~ladls~~~~~i-~qA~~ 228 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKD--YELWKRLADLSEQLGNI-NQARY 228 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHhcccH-HHHHH
Confidence 5999999999999999999999999999999999999999999999999999987 69999999999999999 99999
Q ss_pred HHHHHHhhCCCCHH---HHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHH
Q 007648 161 VYRRYLKYDPSHIE---DFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAII 237 (594)
Q Consensus 161 ~~~~~l~~~p~~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 237 (594)
+|.++++.+|++.+ ....++.+.|+..+|...|.++++..+. .-|. .+
T Consensus 229 cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~---------~d~e-------------------r~- 279 (895)
T KOG2076|consen 229 CYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP---------VDIE-------------------RI- 279 (895)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc---------hhHH-------------------HH-
Confidence 99999999999986 3457899999999999999998841110 0011 00
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccc------hHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 007648 238 RGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRD------FSVIFDSYSQFEEIMVSAKMAKPDLSV 311 (594)
Q Consensus 238 ~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~l~~~~~~~e~~~~~~~l~~~~~~~ 311 (594)
..+-...++.+...++.+.|.++++.+++...+... ++.+|.....+.....
T Consensus 280 -----------~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~----------- 337 (895)
T KOG2076|consen 280 -----------EDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALM----------- 337 (895)
T ss_pred -----------HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhH-----------
Confidence 123445577777888889999999999983222111 1222222111111100
Q ss_pred cccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHH
Q 007648 312 EEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRR 391 (594)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~ 391 (594)
.+.. .. . . .+..+|.......
T Consensus 338 --------------------------~i~~---------------~~--~-r-------------~~e~d~~e~~~~~-- 358 (895)
T KOG2076|consen 338 --------------------------KIVD---------------DR--N-R-------------ESEKDDSEWDTDE-- 358 (895)
T ss_pred --------------------------HHHH---------------Hh--c-c-------------ccCCChhhhhhhh--
Confidence 0000 00 0 0 0111111000000
Q ss_pred HHHhcCCchhHHHHHHHHHhccCCCcccCCchHH-HHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHH
Q 007648 392 VKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTL-WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEM 470 (594)
Q Consensus 392 ~~~~~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~ 470 (594)
.++ ..-.++-.++.+ ......+ .++.+.+..+.++..++ +.......+ ..+....++++..+..
T Consensus 359 ----~~~------~~~~~~~~~~~~--~s~~l~v~rl~icL~~L~~~e~~e~--ll~~l~~~n-~~~~d~~dL~~d~a~a 423 (895)
T KOG2076|consen 359 ----RRR------EEPNALCEVGKE--LSYDLRVIRLMICLVHLKERELLEA--LLHFLVEDN-VWVSDDVDLYLDLADA 423 (895)
T ss_pred ----hcc------ccccccccCCCC--CCccchhHhHhhhhhcccccchHHH--HHHHHHHhc-CChhhhHHHHHHHHHH
Confidence 000 000000001110 1112222 34444333333333333 333333322 1122233788888888
Q ss_pred HHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchH
Q 007648 471 ELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550 (594)
Q Consensus 471 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~ 550 (594)
+...|++.+|..+|..++...+. +...+|...|..+..+|.+++|...|++++.+.|++.+
T Consensus 424 l~~~~~~~~Al~~l~~i~~~~~~-------------------~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D 484 (895)
T KOG2076|consen 424 LTNIGKYKEALRLLSPITNREGY-------------------QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLD 484 (895)
T ss_pred HHhcccHHHHHHHHHHHhcCccc-------------------cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchh
Confidence 88888888888888888887763 23567888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhchhhhhhhccc
Q 007648 551 IIINYALLLEVWTLLHVFLLHVP 573 (594)
Q Consensus 551 ~~~~~~~~~~~~g~~~~a~~~~~ 573 (594)
+.+.++.++.++|+.++|++...
T Consensus 485 ~Ri~Lasl~~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 485 ARITLASLYQQLGNHEKALETLE 507 (895)
T ss_pred hhhhHHHHHHhcCCHHHHHHHHh
Confidence 88888888888888888875443
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.74 E-value=1.6e-17 Score=163.87 Aligned_cols=255 Identities=18% Similarity=0.201 Sum_probs=92.7
Q ss_pred CCchhHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchH
Q 007648 79 ITHPEYETLNNTFERALVTM--HKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIE 156 (594)
Q Consensus 79 ~~~~~~~~A~~~~~~al~~~--P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~ 156 (594)
...|++++|..++++++... |+++..|..++.+....++++.|+..|++.+...|.+ ......+..+ ...+++ +
T Consensus 19 ~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~--~~~~~~l~~l-~~~~~~-~ 94 (280)
T PF13429_consen 19 YQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKAN--PQDYERLIQL-LQDGDP-E 94 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccc-cccccc-c
Confidence 34466666666665544332 5666666666666666666666666666666655442 3334444444 344555 6
Q ss_pred HHHHHHHHHHhhCCCCH--HHHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHH
Q 007648 157 TSLRVYRRYLKYDPSHI--EDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVD 234 (594)
Q Consensus 157 ~a~~~~~~~l~~~p~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 234 (594)
+|.++++++.+..++.. ..++.++...++++++...++++...+
T Consensus 95 ~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~---------------------------------- 140 (280)
T PF13429_consen 95 EALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELP---------------------------------- 140 (280)
T ss_dssp -----------------------H-HHHTT-HHHHHHHHHHHHH-T----------------------------------
T ss_pred ccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc----------------------------------
Confidence 66666665555443222 133445556666666666665543100
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCccc
Q 007648 235 AIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEE 314 (594)
Q Consensus 235 ~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~ 314 (594)
..|.+ ..+|..+|.++.+.|+.++|+..|++++...|++.+ +...++.+.
T Consensus 141 --------~~~~~-~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~---~~~~l~~~l------------------ 190 (280)
T PF13429_consen 141 --------AAPDS-ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD---ARNALAWLL------------------ 190 (280)
T ss_dssp -----------T--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH---HHHHHHHHH------------------
T ss_pred --------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHH------------------
Confidence 00111 568999999999999999999999999999888763 111111110
Q ss_pred ccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHH
Q 007648 315 EDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKI 394 (594)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~ 394 (594)
+
T Consensus 191 -------------------------------------------------------------------------------i 191 (280)
T PF13429_consen 191 -------------------------------------------------------------------------------I 191 (280)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------H
Confidence 0
Q ss_pred hcCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhc
Q 007648 395 FEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRH 474 (594)
Q Consensus 395 ~~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~ 474 (594)
..|+.++++.+++......|+ .+.+|..+|..+...|++++|...|+++++.+|++| .+...++.++...
T Consensus 192 ~~~~~~~~~~~l~~~~~~~~~------~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~----~~~~~~a~~l~~~ 261 (280)
T PF13429_consen 192 DMGDYDEAREALKRLLKAAPD------DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP----LWLLAYADALEQA 261 (280)
T ss_dssp TTCHHHHHHHHHHHHHHH-HT------SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H----HHHHHHHHHHT--
T ss_pred HCCChHHHHHHHHHHHHHCcC------HHHHHHHHHHHhcccccccccccccccccccccccc----ccccccccccccc
Confidence 013334444444444443222 456888999999999999999999999999999999 8999999999999
Q ss_pred CChHHHHHHHHHHhcC
Q 007648 475 KNFKGALELMRRATAE 490 (594)
Q Consensus 475 ~~~~~A~~~~~~al~~ 490 (594)
|+.++|..+++++++.
T Consensus 262 g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 262 GRKDEALRLRRQALRL 277 (280)
T ss_dssp ----------------
T ss_pred cccccccccccccccc
Confidence 9999999999998764
No 42
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.74 E-value=1.4e-13 Score=155.59 Aligned_cols=423 Identities=9% Similarity=0.003 Sum_probs=283.3
Q ss_pred CCCHHHHHHHHH-HHHcCChhHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCC
Q 007648 24 PFSLKLWWRYLV-AKREAPFKKRFVIYERALKALPGSY--KLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHK 100 (594)
Q Consensus 24 P~~~~~w~~~~~-~~~~~~~~~a~~~~e~al~~~P~s~--~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~ 100 (594)
+.+...+...+. +.+.|+++.|..+|+...+....++ -.+..++... ...+..+.|..+|+.+.. |+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~--------~~~g~~~eAl~lf~~M~~--pd 436 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKAC--------KKQRAVKEAFRFAKLIRN--PT 436 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH--------HHCCCHHHHHHHHHHcCC--CC
Confidence 344455555444 4457999999999999887654332 2222333333 344778899998888765 54
Q ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhC--CCCHH--HH
Q 007648 101 MPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYD--PSHIE--DF 176 (594)
Q Consensus 101 ~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~--p~~~~--~~ 176 (594)
...|..++..+.+.|+++.|+.+|++..+..... ....|..+...+-..|+. +.|.++|+++.+.. |+... .+
T Consensus 437 -~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~p-D~~tynsLI~~y~k~G~v-d~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 437 -LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKA-DCKLYTTLISTCAKSGKV-DAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred -HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCcCH-HHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 6788888999999999999999999988764432 257788888888888888 99999999888653 43332 45
Q ss_pred HHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHh----hccchhHHHH
Q 007648 177 IEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIR----KFTDEVGRLW 252 (594)
Q Consensus 177 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~~ 252 (594)
+..|.+.|++++|..+|+.+....- ......|..++..+...++. ..+..+++++.. ..|+ ...|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv------~PD~vTYnsLI~a~~k~G~~---deA~~lf~eM~~~~~gi~PD--~vTy 582 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNV------KPDRVVFNALISACGQSGAV---DRAFDVLAEMKAETHPIDPD--HITV 582 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCC------CCCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHhcCCCCCc--HHHH
Confidence 6778889999999999988863110 11234566555555444321 123345555543 2354 3567
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhh
Q 007648 253 TSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDV 332 (594)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (594)
..+...|.+.|++++|.++|++..+...... ...|...+..--
T Consensus 583 naLI~ay~k~G~ldeA~elf~~M~e~gi~p~--~~tynsLI~ay~----------------------------------- 625 (1060)
T PLN03218 583 GALMKACANAGQVDRAKEVYQMIHEYNIKGT--PEVYTIAVNSCS----------------------------------- 625 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHH-----------------------------------
Confidence 7788888888888888888888776542211 123332221110
Q ss_pred hhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHH
Q 007648 333 NLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAV 410 (594)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai 410 (594)
..+.+..++..|+++. .....|+ ...|..++..+. |+.++|.++|+...
T Consensus 626 ------------------k~G~~deAl~lf~eM~----------~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 626 ------------------QKGDWDFALSIYDDMK----------KKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred ------------------hcCCHHHHHHHHHHHH----------HcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 0234667777887742 1122444 556766666653 78999999999988
Q ss_pred hc-cCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007648 411 RT-VDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQ--VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRA 487 (594)
Q Consensus 411 ~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 487 (594)
+. +.| ....|..+...+.+.|++++|..+|++... ..|+. ..|..++..+.+.|++++|.++|++.
T Consensus 677 k~G~~p------d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv-----vtyN~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 677 KQGIKL------GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV-----STMNALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred HcCCCC------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 64 233 467788888888899999999999998765 34543 56888888888899999999999976
Q ss_pred hc--CCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccC-CchHHHHHHHHHHHHhch
Q 007648 488 TA--EPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRI-ATPQIIINYALLLEVWTL 564 (594)
Q Consensus 488 l~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~~~~~~~~~g~ 564 (594)
.. ..| +...|..++..+.+.|++++|.++++++++... .+..++..+..+.. +.
T Consensus 746 ~~~Gi~P---------------------d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~ 802 (1060)
T PLN03218 746 KRLGLCP---------------------NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RR 802 (1060)
T ss_pred HHcCCCC---------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HH
Confidence 54 456 346778888888899999999999999988532 23345555544432 34
Q ss_pred hhhhhh
Q 007648 565 LHVFLL 570 (594)
Q Consensus 565 ~~~a~~ 570 (594)
++++.+
T Consensus 803 y~ka~~ 808 (1060)
T PLN03218 803 FEKACA 808 (1060)
T ss_pred HHHHhh
Confidence 555553
No 43
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.74 E-value=6.4e-16 Score=167.09 Aligned_cols=251 Identities=23% Similarity=0.384 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHHcCCchHHHHHHH
Q 007648 86 TLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQ---HDRIWEIYLRFVEQEGIPIETSLRVY 162 (594)
Q Consensus 86 ~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~---~~~~w~~~~~~~~~~~~~~~~a~~~~ 162 (594)
+..+-|+|.+..+|+|.-+|+.|+.+.+..++++.||++++|||..+.... -..+|.+|+.++...|.. +...++|
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~e-esl~kVF 1520 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTE-ESLKKVF 1520 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcH-HHHHHHH
Confidence 345679999999999999999999999999999999999999999874321 247999999999999987 8999999
Q ss_pred HHHHhhCCCCHH--HHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHH
Q 007648 163 RRYLKYDPSHIE--DFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGG 240 (594)
Q Consensus 163 ~~~l~~~p~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (594)
+|+.+.+..-.- .+..+|...+.+++|.++|+.++.
T Consensus 1521 eRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~K------------------------------------------ 1558 (1710)
T KOG1070|consen 1521 ERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLK------------------------------------------ 1558 (1710)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHH------------------------------------------
Confidence 999877543331 344556666666666666555541
Q ss_pred HhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccc
Q 007648 241 IRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEH 320 (594)
Q Consensus 241 ~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~ 320 (594)
.|- +....|+.|++++.++.+-+.|+.++++||+..|...+
T Consensus 1559 --KF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH------------------------------------ 1599 (1710)
T KOG1070|consen 1559 --KFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH------------------------------------ 1599 (1710)
T ss_pred --Hhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh------------------------------------
Confidence 111 11456777777777777777777777777766554221
Q ss_pred CCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhcCCch
Q 007648 321 GSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPT 400 (594)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 400 (594)
T Consensus 1600 -------------------------------------------------------------------------------- 1599 (1710)
T KOG1070|consen 1600 -------------------------------------------------------------------------------- 1599 (1710)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHH
Q 007648 401 KQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGA 480 (594)
Q Consensus 401 ~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A 480 (594)
.++.-..|+++.+.|+.+++|.+|+..+...|+-. ++|.-|+++++++|+.+.+
T Consensus 1600 ----------------------v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRt----DlW~VYid~eik~~~~~~v 1653 (1710)
T KOG1070|consen 1600 ----------------------VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRT----DLWSVYIDMEIKHGDIKYV 1653 (1710)
T ss_pred ----------------------HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccch----hHHHHHHHHHHccCCHHHH
Confidence 12222335667789999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHhcCC--chhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHh
Q 007648 481 LELMRRATAEP--SVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543 (594)
Q Consensus 481 ~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 543 (594)
|.+|+|++.+. |. . .--++..|.++|...|+-+.+..+-.||.+
T Consensus 1654 R~lfeRvi~l~l~~k----k---------------mKfffKkwLeyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1654 RDLFERVIELKLSIK----K---------------MKFFFKKWLEYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHhcCCChh----H---------------hHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 99999999763 32 1 236788999999999999888888778775
No 44
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.73 E-value=1.9e-14 Score=150.78 Aligned_cols=346 Identities=15% Similarity=0.163 Sum_probs=234.6
Q ss_pred cCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccH
Q 007648 39 EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFI 118 (594)
Q Consensus 39 ~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~ 118 (594)
.|+++.|..++..+++++|..+..|.-.+... .+.|+.+++...+-.|-.++|.+.+.|...+....++|++
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~Iy--------EqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIY--------EQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHH--------HHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH
Confidence 49999999999999999999999998777654 4568999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCH-H-------HHHHHHHhcccHHHHH
Q 007648 119 TKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHI-E-------DFIEFLVKSKLWQEAA 190 (594)
Q Consensus 119 ~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~-~-------~~~~~~~~~~~~~~a~ 190 (594)
+.|+-+|.|||+..|.+ -++......++..+|+. ..|...|.+++..+|... + .+++.+...++-+.|.
T Consensus 224 ~qA~~cy~rAI~~~p~n--~~~~~ers~L~~~~G~~-~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPSN--WELIYERSSLYQKTGDL-KRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred HHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHhChH-HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999986 34444467788899999 999999999999999322 1 1233444444446666
Q ss_pred HHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHH
Q 007648 191 ERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARD 270 (594)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~ 270 (594)
+.++..+. .+.+. +. .+-...++.++....+++.|..
T Consensus 301 ~~le~~~s------------------------~~~~~----------------~~---~ed~ni~ael~l~~~q~d~~~~ 337 (895)
T KOG2076|consen 301 KALEGALS------------------------KEKDE----------------AS---LEDLNILAELFLKNKQSDKALM 337 (895)
T ss_pred HHHHHHHh------------------------hcccc----------------cc---ccHHHHHHHHHHHhHHHHHhhH
Confidence 65555441 00000 00 1234566777777777777766
Q ss_pred HHHHHHhhh--ccccchHHHHHHHHHHHHHHHHH-HhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccc
Q 007648 271 IFEEGMMTV--VTVRDFSVIFDSYSQFEEIMVSA-KMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGF 347 (594)
Q Consensus 271 ~~~~al~~~--p~~~~~~~l~~~~~~~e~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (594)
..-+.-... +++.. | ...+...... .+-..++ +.+..++. ++.. ..+-
T Consensus 338 ~i~~~~~r~~e~d~~e----~---~~~~~~~~~~~~~~~~~~-------------~~s~~l~v-~rl~-icL~------- 388 (895)
T KOG2076|consen 338 KIVDDRNRESEKDDSE----W---DTDERRREEPNALCEVGK-------------ELSYDLRV-IRLM-ICLV------- 388 (895)
T ss_pred HHHHHhccccCCChhh----h---hhhhhccccccccccCCC-------------CCCccchh-HhHh-hhhh-------
Confidence 555444321 22221 1 0111110000 0000111 11001110 0000 0000
Q ss_pred cccchhhHHHHHHHHHhhhhhchhhhhhhhhccC--CC-ChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCc
Q 007648 348 WLHDVKDVDLRLARLEHLMNRRPELANSVLLRQN--PH-NVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKP 422 (594)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--p~-~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~ 422 (594)
..... ...+-++ ...+..+ |. +++.++..+..+. |++..|+..|...+.. ++.. .
T Consensus 389 ---~L~~~----e~~e~ll--------~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~----~ 448 (895)
T KOG2076|consen 389 ---HLKER----ELLEALL--------HFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGYQ----N 448 (895)
T ss_pred ---ccccc----chHHHHH--------HHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-cccc----c
Confidence 00000 0111110 0122233 43 5778888888885 7899999999998874 3321 4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 007648 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEP 491 (594)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 491 (594)
..+|+.+|.++...|.+++|...|++++...|++. ++-+.++.++.++|+.++|.+++++..--+
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~----D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNL----DARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCch----hhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 67999999999999999999999999999999999 999999999999999999999999877444
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=3.1e-16 Score=159.40 Aligned_cols=172 Identities=17% Similarity=0.202 Sum_probs=151.7
Q ss_pred hhccCCCChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 007648 377 LLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNY 454 (594)
Q Consensus 377 ~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p 454 (594)
.+..+|+.++.|-..|..+ +++++.|+++|++||+. +|. +..+|--+|-=+.....+|.|...|++||..+|
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl-dp~-----faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL-DPR-----FAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc-CCc-----cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 4788999999999999998 48999999999999995 664 455555566545567889999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHH
Q 007648 455 KTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLEST 534 (594)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 534 (594)
.+- .+|+.+|.+++++++++.|.-.|++|++++|. +..+..+.+.++.++|+.|+|
T Consensus 487 rhY----nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~--------------------nsvi~~~~g~~~~~~k~~d~A 542 (638)
T KOG1126|consen 487 RHY----NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS--------------------NSVILCHIGRIQHQLKRKDKA 542 (638)
T ss_pred hhh----HHHHhhhhheeccchhhHHHHHHHhhhcCCcc--------------------chhHHhhhhHHHHHhhhhhHH
Confidence 998 99999999999999999999999999999994 567888999999999999999
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhh-------hcccCcccc
Q 007648 535 RAVYERILDLRIATPQIIINYALLLEVWTLLHVFL-------LHVPFTFSG 578 (594)
Q Consensus 535 ~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~-------~~~~~~~~~ 578 (594)
+.+|++|+.++|.+|...++.+.++...|++++|+ +.+|...++
T Consensus 543 L~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v 593 (638)
T KOG1126|consen 543 LQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSV 593 (638)
T ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHH
Confidence 99999999999999999999999999999999997 455555444
No 46
>PLN03077 Protein ECB2; Provisional
Probab=99.68 E-value=3.9e-13 Score=153.39 Aligned_cols=439 Identities=11% Similarity=0.028 Sum_probs=205.1
Q ss_pred CHHHHHHHHHHH-HcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHh--cCCCh
Q 007648 26 SLKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVT--MHKMP 102 (594)
Q Consensus 26 ~~~~w~~~~~~~-~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~P~~~ 102 (594)
+...+..++... +.|+++.|+.+|++... | ++-.|...+... ...|+.++|..+|+++... .|+.
T Consensus 221 ~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~-d~~s~n~li~~~--------~~~g~~~eAl~lf~~M~~~g~~Pd~- 288 (857)
T PLN03077 221 DVDVVNALITMYVKCGDVVSARLVFDRMPR--R-DCISWNAMISGY--------FENGECLEGLELFFTMRELSVDPDL- 288 (857)
T ss_pred ccchHhHHHHHHhcCCCHHHHHHHHhcCCC--C-CcchhHHHHHHH--------HhCCCHHHHHHHHHHHHHcCCCCCh-
Confidence 333444444422 34566666666665432 2 233454444433 3345566666666666554 2432
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHHHHHHHHh
Q 007648 103 RIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVK 182 (594)
Q Consensus 103 ~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~ 182 (594)
..+...+..+.+.|+.+.+++++..+++..-.. +..+|..+...+-..|+. ++|.++|++....++..-..++..+.+
T Consensus 289 ~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~-d~~~~n~Li~~y~k~g~~-~~A~~vf~~m~~~d~~s~n~li~~~~~ 366 (857)
T PLN03077 289 MTITSVISACELLGDERLGREMHGYVVKTGFAV-DVSVCNSLIQMYLSLGSW-GEAEKVFSRMETKDAVSWTAMISGYEK 366 (857)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc-chHHHHHHHHHHHhcCCH-HHHHHHHhhCCCCCeeeHHHHHHHHHh
Confidence 344445555555566666666666555532111 135555555555556665 666666665432111111234455566
Q ss_pred cccHHHHHHHHHHhhcC---cccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHH
Q 007648 183 SKLWQEAAERLASVLND---DQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYY 259 (594)
Q Consensus 183 ~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~ 259 (594)
.|++++|..+|+++... |+. ..+..++..+...++. ....+++..+.+.-......++..+.+.|
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~---------~t~~~ll~a~~~~g~~---~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDE---------ITIASVLSACACLGDL---DVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCc---------eeHHHHHHHHhccchH---HHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 66666666666665421 110 1111111111111110 01223333333321111134666777777
Q ss_pred HHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHH---HHHHHH--HhcCCCCCCcccccccccCCcchhhhHhhhhh
Q 007648 260 IRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFE---EIMVSA--KMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNL 334 (594)
Q Consensus 260 ~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e---~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (594)
.+.|+.++|.++|++... ++...|..+...+..-. +...-+ .......+. .. +..
T Consensus 435 ~k~g~~~~A~~vf~~m~~--~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~---------------~t---~~~ 494 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPE--KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNS---------------VT---LIA 494 (857)
T ss_pred HHcCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCH---------------hH---HHH
Confidence 777777777777776543 22222223322222111 000000 000000000 00 000
Q ss_pred hHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhc
Q 007648 335 SMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRT 412 (594)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~ 412 (594)
.+... ...+.+......+..++ -.--+.+......++..+. |+.++|...|+..
T Consensus 495 lL~a~----------~~~g~l~~~~~i~~~~~-----------~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--- 550 (857)
T PLN03077 495 ALSAC----------ARIGALMCGKEIHAHVL-----------RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--- 550 (857)
T ss_pred HHHHH----------hhhchHHHhHHHHHHHH-----------HhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---
Confidence 00000 00111222222222211 0001122223333444442 5556666655553
Q ss_pred cCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 007648 413 VDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQ--VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE 490 (594)
Q Consensus 413 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 490 (594)
++ ....|..+...+.+.|+.++|..+|++..+ ..|+.. .+..+.....+.|.+++|.++|++..+.
T Consensus 551 -~~------d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-----T~~~ll~a~~~~g~v~ea~~~f~~M~~~ 618 (857)
T PLN03077 551 -EK------DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-----TFISLLCACSRSGMVTQGLEYFHSMEEK 618 (857)
T ss_pred -CC------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-----cHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 12 234555555555566666666666665544 234442 2222222333456666666666655422
Q ss_pred ---CchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhh
Q 007648 491 ---PSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHV 567 (594)
Q Consensus 491 ---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~ 567 (594)
.| +...|..+++++.+.|++++|.+++++. ...|+ +.+|..+...+..+|+.+.
T Consensus 619 ~gi~P---------------------~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~ 675 (857)
T PLN03077 619 YSITP---------------------NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVEL 675 (857)
T ss_pred hCCCC---------------------chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHH
Confidence 23 3467888899999999999999999884 45554 6788888888888887775
Q ss_pred hh
Q 007648 568 FL 569 (594)
Q Consensus 568 a~ 569 (594)
+.
T Consensus 676 ~e 677 (857)
T PLN03077 676 GE 677 (857)
T ss_pred HH
Confidence 54
No 47
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=1.7e-13 Score=134.35 Aligned_cols=163 Identities=10% Similarity=0.185 Sum_probs=138.0
Q ss_pred hhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 007648 377 LLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNY 454 (594)
Q Consensus 377 ~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p 454 (594)
++..+|.++..+..++.++. ++..+....|.+|... +|. ++++|++-|++..-.+++++|..-|++|+.++|
T Consensus 352 ~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l-dp~-----n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p 425 (606)
T KOG0547|consen 352 AIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL-DPE-----NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP 425 (606)
T ss_pred HHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc-CCC-----CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 47778888777777777664 6788889999999885 554 678999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHH
Q 007648 455 KTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLEST 534 (594)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 534 (594)
++. -.+..++-.+++++.++++...|+.+.+..|+ .+.++..+++++.-.++|++|
T Consensus 426 e~~----~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~--------------------~~Evy~~fAeiLtDqqqFd~A 481 (606)
T KOG0547|consen 426 ENA----YAYIQLCCALYRQHKIAESMKTFEEAKKKFPN--------------------CPEVYNLFAEILTDQQQFDKA 481 (606)
T ss_pred hhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------------------CchHHHHHHHHHhhHHhHHHH
Confidence 998 67777787788899999999999999999995 678999999999999999999
Q ss_pred HHHHHHHHhccCC------chHHHHHHHHHHHH-hchhhhhh
Q 007648 535 RAVYERILDLRIA------TPQIIINYALLLEV-WTLLHVFL 569 (594)
Q Consensus 535 ~~~~~~al~~~P~------~~~~~~~~~~~~~~-~g~~~~a~ 569 (594)
.+.|.+|+.+.|. ++..+++-+-+..+ .++++.|+
T Consensus 482 ~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~ 523 (606)
T KOG0547|consen 482 VKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAE 523 (606)
T ss_pred HHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHH
Confidence 9999999999999 77777777666554 25666665
No 48
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.68 E-value=4.1e-12 Score=143.83 Aligned_cols=416 Identities=11% Similarity=0.080 Sum_probs=288.5
Q ss_pred chHhHHHHhhCC--CCHHHHHHHHHHH-HcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHH
Q 007648 13 DLLYEEELLRNP--FSLKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNN 89 (594)
Q Consensus 13 ~~~~e~~l~~~P--~~~~~w~~~~~~~-~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~ 89 (594)
...|+.-...+. .+.-.+..++... ..|..+.|..+|+.... | +...|...+..+ ...|+++.|..
T Consensus 390 l~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~--------~k~g~~e~A~~ 458 (1060)
T PLN03218 390 IDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVC--------ASSQDIDGALR 458 (1060)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHH--------HhCcCHHHHHH
Confidence 444555444443 3344444455543 36888899988887764 5 567777776665 45688999999
Q ss_pred HHHHHHHhc-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhh
Q 007648 90 TFERALVTM-HKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKY 168 (594)
Q Consensus 90 ~~~~al~~~-P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~ 168 (594)
+|+++.+.. +-+...|..++..+.+.|+++.|+++|++..+..... +...|..++..+-+.|+. ++|.++|++....
T Consensus 459 lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~P-dvvTynaLI~gy~k~G~~-eeAl~lf~~M~~~ 536 (1060)
T PLN03218 459 VLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEA-NVHTFGALIDGCARAGQV-AKAFGAYGIMRSK 536 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCcCH-HHHHHHHHHHHHc
Confidence 999999875 3457889999999999999999999999998754332 267888888888888998 9999999988654
Q ss_pred --CCCCHH--HHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhc
Q 007648 169 --DPSHIE--DFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKF 244 (594)
Q Consensus 169 --~p~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (594)
.|+... .++..+.+.|++++|.++|+++.....- . ......|..++..+...++. ..+..+++.+.+..
T Consensus 537 Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g--i--~PD~vTynaLI~ay~k~G~l---deA~elf~~M~e~g 609 (1060)
T PLN03218 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP--I--DPDHITVGALMKACANAGQV---DRAKEVYQMIHEYN 609 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC--C--CCcHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHcC
Confidence 455432 4567788899999999999988631000 0 11234566666555554432 12445666665543
Q ss_pred cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhh--hccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCC
Q 007648 245 TDEVGRLWTSLADYYIRRELFEKARDIFEEGMMT--VVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGS 322 (594)
Q Consensus 245 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (594)
.......|..+...|.+.|+.++|.++|++.... .|+. ..|...+..--
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~----~TynsLI~a~~------------------------- 660 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE----VFFSALVDVAG------------------------- 660 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHH-------------------------
Confidence 1112578999999999999999999999998875 3332 22322221100
Q ss_pred cchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhcc-CCCChHHHHHHHHHhc--CCc
Q 007648 323 AEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQ-NPHNVEQWHRRVKIFE--GNP 399 (594)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~p~~~~~~~~~~~~~~--~~~ 399 (594)
..+.+..+...++++ .+. .+.+...|..++..+. |+.
T Consensus 661 ----------------------------k~G~~eeA~~l~~eM------------~k~G~~pd~~tynsLI~ay~k~G~~ 700 (1060)
T PLN03218 661 ----------------------------HAGDLDKAFEILQDA------------RKQGIKLGTVSYSSLMGACSNAKNW 700 (1060)
T ss_pred ----------------------------hCCCHHHHHHHHHHH------------HHcCCCCCHHHHHHHHHHHHhCCCH
Confidence 023466677778774 222 3456778888888774 899
Q ss_pred hhHHHHHHHHHhc-cCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccCCChhhHHHHHHHHHHHHHhcCC
Q 007648 400 TKQILTYTEAVRT-VDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQ--VNYKTVDHLASIWCEWAEMELRHKN 476 (594)
Q Consensus 400 ~~a~~~y~~Ai~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~--~~p~~~~~~~~~~~~~~~~~~~~~~ 476 (594)
++|..+|++.... +.| ....|..+...+.+.|++++|..+|++... ..|+. ..|..+.....+.|+
T Consensus 701 eeA~~lf~eM~~~g~~P------dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~-----~Ty~sLL~a~~k~G~ 769 (1060)
T PLN03218 701 KKALELYEDIKSIKLRP------TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT-----ITYSILLVASERKDD 769 (1060)
T ss_pred HHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHCCC
Confidence 9999999997653 334 467899999999999999999999998765 45655 355556666778999
Q ss_pred hHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCch
Q 007648 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP 549 (594)
Q Consensus 477 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~ 549 (594)
++.|.+++.+.++.... -+...+..++.+.. +++++|..+.+..+..++.++
T Consensus 770 le~A~~l~~~M~k~Gi~-------------------pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~g~~ 821 (1060)
T PLN03218 770 ADVGLDLLSQAKEDGIK-------------------PNLVMCRCITGLCL--RRFEKACALGEPVVSFDSGRP 821 (1060)
T ss_pred HHHHHHHHHHHHHcCCC-------------------CCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhcccc
Confidence 99999999999875331 03455655555543 457788777777776665544
No 49
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.67 E-value=6e-13 Score=148.28 Aligned_cols=432 Identities=12% Similarity=0.075 Sum_probs=290.9
Q ss_pred chHhHHHHhhC--CCCHHHHHHHHHHH-HcCChhHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhccCCCCCchhHHHHH
Q 007648 13 DLLYEEELLRN--PFSLKLWWRYLVAK-REAPFKKRFVIYERALKA-LPGSYKLWHAYLIERLSIVKNLPITHPEYETLN 88 (594)
Q Consensus 13 ~~~~e~~l~~~--P~~~~~w~~~~~~~-~~~~~~~a~~~~e~al~~-~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~ 88 (594)
...|+...... +.+...|..++... ..++++.+.+++....+. ...++..+...+... ...|+++.|.
T Consensus 107 l~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y--------~k~g~~~~A~ 178 (697)
T PLN03081 107 LELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH--------VKCGMLIDAR 178 (697)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH--------hcCCCHHHHH
Confidence 44555554443 35778888888855 478899999999998874 223677777777665 5669999999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhh
Q 007648 89 NTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKY 168 (594)
Q Consensus 89 ~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~ 168 (594)
++|+++.. | ++..|..++..+.+.|++++|..+|++.++..+.. ....+...+......|.. ..+.+++..+++.
T Consensus 179 ~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~~~~-~~~~~l~~~~~~~ 253 (697)
T PLN03081 179 RLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA-EPRTFVVMLRASAGLGSA-RAGQQLHCCVLKT 253 (697)
T ss_pred HHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC-ChhhHHHHHHHHhcCCcH-HHHHHHHHHHHHh
Confidence 99999864 4 46789999999999999999999999998765432 234555555556666776 7788877766654
Q ss_pred C--CCCH--HHHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhh-
Q 007648 169 D--PSHI--EDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRK- 243 (594)
Q Consensus 169 ~--p~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 243 (594)
. |+.. ..++..|.+.|++++|.++|+.+.. .....|..++.....+++. ..+..+++++...
T Consensus 254 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----------~~~vt~n~li~~y~~~g~~---~eA~~lf~~M~~~g 320 (697)
T PLN03081 254 GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----------KTTVAWNSMLAGYALHGYS---EEALCLYYEMRDSG 320 (697)
T ss_pred CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----------CChhHHHHHHHHHHhCCCH---HHHHHHHHHHHHcC
Confidence 3 3221 2566778888899999988887752 1234577766666665542 2234555555432
Q ss_pred -ccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh--ccccchHHHHHHHHH---HHHHHHHHHhcCCCCCCcccccc
Q 007648 244 -FTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTV--VTVRDFSVIFDSYSQ---FEEIMVSAKMAKPDLSVEEEEDD 317 (594)
Q Consensus 244 -~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~l~~~~~~---~e~~~~~~~l~~~~~~~~~~~~~ 317 (594)
.|+ ...+..+...+.+.|+++.|.+++..+++.. |+...+..+...|.. +++... ..+........
T Consensus 321 ~~pd--~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~--vf~~m~~~d~~---- 392 (697)
T PLN03081 321 VSID--QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN--VFDRMPRKNLI---- 392 (697)
T ss_pred CCCC--HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHH--HHHhCCCCCee----
Confidence 344 3467778888888888888888888888764 222222233333322 222211 11111111000
Q ss_pred cccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHh--
Q 007648 318 EEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF-- 395 (594)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~-- 395 (594)
.|+..+.-+-+ .+....+...|+++. .....|+. ..+..++...
T Consensus 393 -------------t~n~lI~~y~~----------~G~~~~A~~lf~~M~----------~~g~~Pd~-~T~~~ll~a~~~ 438 (697)
T PLN03081 393 -------------SWNALIAGYGN----------HGRGTKAVEMFERMI----------AEGVAPNH-VTFLAVLSACRY 438 (697)
T ss_pred -------------eHHHHHHHHHH----------cCCHHHHHHHHHHHH----------HhCCCCCH-HHHHHHHHHHhc
Confidence 12222211211 234566777787753 12334553 4455554444
Q ss_pred cCCchhHHHHHHHHHhc--cCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHh
Q 007648 396 EGNPTKQILTYTEAVRT--VDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELR 473 (594)
Q Consensus 396 ~~~~~~a~~~y~~Ai~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~ 473 (594)
.|..++|..+|+...+. +.| ....|..+...+.+.|++++|.+++++. ...|+. .+|..+......
T Consensus 439 ~g~~~~a~~~f~~m~~~~g~~p------~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~~-----~~~~~Ll~a~~~ 506 (697)
T PLN03081 439 SGLSEQGWEIFQSMSENHRIKP------RAMHYACMIELLGREGLLDEAYAMIRRA-PFKPTV-----NMWAALLTACRI 506 (697)
T ss_pred CCcHHHHHHHHHHHHHhcCCCC------CccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCCH-----HHHHHHHHHHHH
Confidence 38999999999998763 334 3456777888899999999999999874 233433 578888888788
Q ss_pred cCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhc
Q 007648 474 HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL 544 (594)
Q Consensus 474 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 544 (594)
.|+++.|+.++++.++..|+ +...+..+++++.+.|++++|.++++...+.
T Consensus 507 ~g~~~~a~~~~~~l~~~~p~--------------------~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 507 HKNLELGRLAAEKLYGMGPE--------------------KLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred cCCcHHHHHHHHHHhCCCCC--------------------CCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999995 3466788899999999999999999988764
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.67 E-value=3e-13 Score=140.59 Aligned_cols=136 Identities=13% Similarity=0.091 Sum_probs=106.0
Q ss_pred CCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhh
Q 007648 382 PHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDH 459 (594)
Q Consensus 382 p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~ 459 (594)
|+++.++..++..+. |++++|...++++++..|++.. ........+ .....++.+.+++.++++++..|++|.
T Consensus 260 ~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~--~~~~~l~~~--~~l~~~~~~~~~~~~e~~lk~~p~~~~- 334 (409)
T TIGR00540 260 RHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRA--ISLPLCLPI--PRLKPEDNEKLEKLIEKQAKNVDDKPK- 334 (409)
T ss_pred hCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCccc--chhHHHHHh--hhcCCCChHHHHHHHHHHHHhCCCChh-
Confidence 368889998888774 8999999999999997544210 000122222 223468889999999999999999983
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHH--HHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHH
Q 007648 460 LASIWCEWAEMELRHKNFKGALELMR--RATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAV 537 (594)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 537 (594)
..+...+|.++.+.|++++|++.|+ ++++..|+ +..+.++++++.+.|+.++|+++
T Consensus 335 -~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~---------------------~~~~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 335 -CCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD---------------------ANDLAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred -HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC---------------------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 1345678888899999999999999 58788884 34566999999999999999999
Q ss_pred HHHHHhc
Q 007648 538 YERILDL 544 (594)
Q Consensus 538 ~~~al~~ 544 (594)
|++++..
T Consensus 393 ~~~~l~~ 399 (409)
T TIGR00540 393 RQDSLGL 399 (409)
T ss_pred HHHHHHH
Confidence 9999773
No 51
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.66 E-value=1e-14 Score=157.93 Aligned_cols=232 Identities=22% Similarity=0.331 Sum_probs=197.5
Q ss_pred CcchHhHHHHhhCCCCHHHHHHHHHHHH-cCChhHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHhccCCCCCchhH
Q 007648 11 EDDLLYEEELLRNPFSLKLWWRYLVAKR-EAPFKKRFVIYERALKALP-----GSYKLWHAYLIERLSIVKNLPITHPEY 84 (594)
Q Consensus 11 ~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P-----~s~~lW~~~~~~~~~~~~~~~~~~~~~ 84 (594)
+...-||+.++.+|++.=.|++|+.+-. .++.++||++++|||..+. ...++|..|++++... |.-
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y--------G~e 1513 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY--------GTE 1513 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh--------CcH
Confidence 3456799999999999999999999765 7999999999999999863 2468999999998443 666
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 007648 85 ETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRR 164 (594)
Q Consensus 85 ~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~ 164 (594)
+...++|+||.+.+ +.-.++..+..++.+.++++.|-++|++.++...+ ...+|..|+++..+.+.. +.|..++.+
T Consensus 1514 esl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q--~~~vW~~y~~fLl~~ne~-~aa~~lL~r 1589 (1710)
T KOG1070|consen 1514 ESLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ--TRKVWIMYADFLLRQNEA-EAARELLKR 1589 (1710)
T ss_pred HHHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc--hhhHHHHHHHHHhcccHH-HHHHHHHHH
Confidence 88999999999875 44589999999999999999999999999998774 389999999999888877 899999999
Q ss_pred HHhhCCCC--HH---HHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHH
Q 007648 165 YLKYDPSH--IE---DFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRG 239 (594)
Q Consensus 165 ~l~~~p~~--~~---~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (594)
+|+.-|.. .+ .++++..++|+.++++.+|+..+. .+|..
T Consensus 1590 AL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~------------------------ayPKR------------ 1633 (1710)
T KOG1070|consen 1590 ALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLS------------------------AYPKR------------ 1633 (1710)
T ss_pred HHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHh------------------------hCccc------------
Confidence 99999983 33 467889999999999999887762 33332
Q ss_pred HHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHH
Q 007648 240 GIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIM 299 (594)
Q Consensus 240 ~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~ 299 (594)
.++|..|++..+++|+...+|.+|+|++...-......-+|..|+.+|+..
T Consensus 1634 ---------tDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~ 1684 (1710)
T KOG1070|consen 1634 ---------TDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSH 1684 (1710)
T ss_pred ---------hhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhc
Confidence 479999999999999999999999999987655444557888999999875
No 52
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=5.4e-13 Score=137.88 Aligned_cols=133 Identities=13% Similarity=0.165 Sum_probs=115.3
Q ss_pred ccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC
Q 007648 379 RQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKT 456 (594)
Q Consensus 379 ~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~ 456 (594)
+..|+++.++..++..+. |+.++|....+++++. ++ .+.+...++.+ ..++.+++.+.+++.++..|++
T Consensus 257 ~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~------~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 257 RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QY------DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CC------CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCC
Confidence 445788999998888774 8999999999999983 55 35666666654 3599999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHH
Q 007648 457 VDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRA 536 (594)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 536 (594)
+ .+.+.+|.+..+.|++++|++.|+++++..|+ ...+..++.++.+.|+.++|..
T Consensus 328 ~----~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~---------------------~~~~~~La~~~~~~g~~~~A~~ 382 (398)
T PRK10747 328 P----LLWSTLGQLLMKHGEWQEASLAFRAALKQRPD---------------------AYDYAWLADALDRLHKPEEAAA 382 (398)
T ss_pred H----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---------------------HHHHHHHHHHHHHcCCHHHHHH
Confidence 9 99999999999999999999999999999994 3556789999999999999999
Q ss_pred HHHHHHhcc
Q 007648 537 VYERILDLR 545 (594)
Q Consensus 537 ~~~~al~~~ 545 (594)
+|++++.+-
T Consensus 383 ~~~~~l~~~ 391 (398)
T PRK10747 383 MRRDGLMLT 391 (398)
T ss_pred HHHHHHhhh
Confidence 999998853
No 53
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=1.2e-12 Score=136.00 Aligned_cols=293 Identities=13% Similarity=0.025 Sum_probs=161.1
Q ss_pred CChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhcccH
Q 007648 40 APFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMP-RIWIMYLETLTSQKFI 118 (594)
Q Consensus 40 ~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~-~lw~~y~~~~~~~~~~ 118 (594)
|+++.|.+...++.+..|...-.+...+... ...|+++.|...|+++.+..|++. .+...++.+....|++
T Consensus 98 g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa--------~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 98 GDYAKAEKLIAKNADHAAEPVLNLIKAAEAA--------QQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH--------HHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCH
Confidence 6666666666666665554333333333322 233556666666666666666553 3455556666666666
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHHHHHHHHhcccHHHHHHHHHHhhc
Q 007648 119 TKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLN 198 (594)
Q Consensus 119 ~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 198 (594)
+.|+..++++++..|.+ ..++..++.+....|+. +.|.+.+.+..+..+.+...+..+..
T Consensus 170 ~~Al~~l~~l~~~~P~~--~~~l~ll~~~~~~~~d~-~~a~~~l~~l~k~~~~~~~~~~~l~~----------------- 229 (409)
T TIGR00540 170 HAARHGVDKLLEMAPRH--KEVLKLAEEAYIRSGAW-QALDDIIDNMAKAGLFDDEEFADLEQ----------------- 229 (409)
T ss_pred HHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhhH-HHHHHHHHHHHHcCCCCHHHHHHHHH-----------------
Confidence 66666666666666654 45555555555555665 66666666655553333321111000
Q ss_pred CcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccc---hhHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 007648 199 DDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTD---EVGRLWTSLADYYIRRELFEKARDIFEEG 275 (594)
Q Consensus 199 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~~~~~~la~~~~~~g~~~~A~~~~~~a 275 (594)
..|....+--... .....+.......|. +.+.++..++..+...|+.++|.++++++
T Consensus 230 -------------~a~~~~l~~~~~~-------~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~ 289 (409)
T TIGR00540 230 -------------KAEIGLLDEAMAD-------EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDG 289 (409)
T ss_pred -------------HHHHHHHHHHHHh-------cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 1111111000000 000122233333342 12689999999999999999999999999
Q ss_pred HhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhH
Q 007648 276 MMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDV 355 (594)
Q Consensus 276 l~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (594)
++..|++.... +. .+.
T Consensus 290 l~~~pd~~~~~--~~---~l~----------------------------------------------------------- 305 (409)
T TIGR00540 290 LKKLGDDRAIS--LP---LCL----------------------------------------------------------- 305 (409)
T ss_pred HhhCCCcccch--hH---HHH-----------------------------------------------------------
Confidence 99988875310 00 000
Q ss_pred HHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhcCCchhHHHHHHHHHhccCCCcccCCch--HHHHHHHHHH
Q 007648 356 DLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPH--TLWVAFAKLY 433 (594)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~y~~Ai~~~~~~~~~~~~~--~~~~~~a~~~ 433 (594)
. ....+|++ .+.++..++++++. .|+ ++ .+...+|.++
T Consensus 306 --------~------------~~~l~~~~--------------~~~~~~~~e~~lk~-~p~-----~~~~~ll~sLg~l~ 345 (409)
T TIGR00540 306 --------P------------IPRLKPED--------------NEKLEKLIEKQAKN-VDD-----KPKCCINRALGQLL 345 (409)
T ss_pred --------H------------hhhcCCCC--------------hHHHHHHHHHHHHh-CCC-----ChhHHHHHHHHHHH
Confidence 0 01112222 23345566666664 332 34 5566777777
Q ss_pred HhcCCHHHHHHHHH--HHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 007648 434 ETYKDIANARVIFD--KAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATA 489 (594)
Q Consensus 434 ~~~~~~~~A~~~~~--kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 489 (594)
.+.|++++|++.|+ ++++..|++. .+..++.++.+.|+.++|++++++++.
T Consensus 346 ~~~~~~~~A~~~le~a~a~~~~p~~~-----~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 346 MKHGEFIEAADAFKNVAACKEQLDAN-----DLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHcccHHHHHHHHHHhHHhhcCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777 4666667664 344677777777777777777777754
No 54
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.64 E-value=5.1e-12 Score=130.71 Aligned_cols=440 Identities=13% Similarity=0.108 Sum_probs=245.1
Q ss_pred CCHHHHHHHHHHH-HcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhc--CCC
Q 007648 25 FSLKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTM--HKM 101 (594)
Q Consensus 25 ~~~~~w~~~~~~~-~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--P~~ 101 (594)
++..+|..+.=.. .-|.+..+.+.||+++...-...+.|..+.-.. ...|.-..|..+.+..+... |.+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~--------saag~~s~Av~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSY--------SAAGSDSKAVNLLRESLKKSEQPSD 392 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHH--------HHhccchHHHHHHHhhcccccCCCc
Confidence 5666666444333 268888889999998877766778887766443 12244577888888888887 777
Q ss_pred hHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHH----cCCc------hHHHHHHHHHHHh
Q 007648 102 PRIWIMYLETLT-SQKFITKARRTFDRALCALPVTQH---DRIWEIYLRFVEQ----EGIP------IETSLRVYRRYLK 167 (594)
Q Consensus 102 ~~lw~~y~~~~~-~~~~~~~A~~~~~ral~~~p~~~~---~~~w~~~~~~~~~----~~~~------~~~a~~~~~~~l~ 167 (594)
+.........+. +.+..+++...-.+++........ +..+..++..+.. -+.. ..++.+.++++++
T Consensus 393 ~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 393 ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 776666666554 467778888888888875432100 1222222222211 1111 1468888899999
Q ss_pred hCCCCHHH--HHH-HHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhc
Q 007648 168 YDPSHIED--FIE-FLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKF 244 (594)
Q Consensus 168 ~~p~~~~~--~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (594)
.+|.|+.. |.. .+...++.+.|....++++. ..++.+...|+-+...+....+. ..+..++..++..+
T Consensus 473 ~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~------l~~~~~~~~whLLALvlSa~kr~---~~Al~vvd~al~E~ 543 (799)
T KOG4162|consen 473 FDPTDPLVIFYLALQYAEQRQLTSALDYAREALA------LNRGDSAKAWHLLALVLSAQKRL---KEALDVVDAALEEF 543 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHH------hcCCccHHHHHHHHHHHhhhhhh---HHHHHHHHHHHHHh
Confidence 99888853 222 34556777777777666652 11233344455444443322211 12233444444444
Q ss_pred cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcc
Q 007648 245 TDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAE 324 (594)
Q Consensus 245 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (594)
|+|. .+-..-..+...-|+.+.+..+....|....+... .-....+.. .++. ..+...+.+ ...+.
T Consensus 544 ~~N~-~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~------~q~~~~~g~---~~~l---k~~l~la~~-q~~~a 609 (799)
T KOG4162|consen 544 GDNH-VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYG------VQQTLDEGK---LLRL---KAGLHLALS-QPTDA 609 (799)
T ss_pred hhhh-hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhh------Hhhhhhhhh---hhhh---hcccccCcc-ccccc
Confidence 4431 11111122222234444444444444432211110 000000000 0000 000000000 00000
Q ss_pred hhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCC-----hHHHHHHHHHhc--C
Q 007648 325 DEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHN-----VEQWHRRVKIFE--G 397 (594)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~-----~~~~~~~~~~~~--~ 397 (594)
+...+. . ...+. ...+.+. .+-.++...+...|.. ...|...+.++. +
T Consensus 610 -~s~sr~---l----------------s~l~a---~~~~~~~--se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~ 664 (799)
T KOG4162|consen 610 -ISTSRY---L----------------SSLVA---SQLKSAG--SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSG 664 (799)
T ss_pred -chhhHH---H----------------HHHHH---hhhhhcc--cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcC
Confidence 000000 0 00000 1111110 0001111122222321 234555555543 6
Q ss_pred CchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCCh
Q 007648 398 NPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNF 477 (594)
Q Consensus 398 ~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~ 477 (594)
+.++|..+...|-+.++- .+..|+..|..+...|...+|.+.|.-|+.++|+++ .....+|.++++.|+.
T Consensus 665 ~~~~a~~CL~Ea~~~~~l------~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv----~s~~Ala~~lle~G~~ 734 (799)
T KOG4162|consen 665 NDDEARSCLLEASKIDPL------SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV----PSMTALAELLLELGSP 734 (799)
T ss_pred CchHHHHHHHHHHhcchh------hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHhCCc
Confidence 788888888888876432 577888888888889999999999999999999998 6667778887777765
Q ss_pred HHH--HHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchH
Q 007648 478 KGA--LELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550 (594)
Q Consensus 478 ~~A--~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~ 550 (594)
.-| +.++..+++.+|. ++..|..+|.+..+.|+.++|..+|.-|+++.+.+|.
T Consensus 735 ~la~~~~~L~dalr~dp~--------------------n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 735 RLAEKRSLLSDALRLDPL--------------------NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred chHHHHHHHHHHHhhCCC--------------------CHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 444 4489999999984 6788999999999999999999999999998888874
No 55
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.64 E-value=1.2e-11 Score=122.07 Aligned_cols=94 Identities=21% Similarity=0.342 Sum_probs=84.2
Q ss_pred hHhHHHHhhCCCCHHHHHHHHHHHH-cCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHH
Q 007648 14 LLYEEELLRNPFSLKLWWRYLVAKR-EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFE 92 (594)
Q Consensus 14 ~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 92 (594)
..|.+++.+.|.|...|..|+.+.+ .+.+.+...+|.++|..||+++++|...+.++.+. ..+++.|+.+|.
T Consensus 92 ~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~-------n~ni~saRalfl 164 (568)
T KOG2396|consen 92 FLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEI-------NLNIESARALFL 164 (568)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhh-------ccchHHHHHHHH
Confidence 4688999999999999999999987 45589999999999999999999999988887543 233899999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHh
Q 007648 93 RALVTMHKMPRIWIMYLETLTS 114 (594)
Q Consensus 93 ~al~~~P~~~~lw~~y~~~~~~ 114 (594)
++|+.+|++|.+|..|..++..
T Consensus 165 rgLR~npdsp~Lw~eyfrmEL~ 186 (568)
T KOG2396|consen 165 RGLRFNPDSPKLWKEYFRMELM 186 (568)
T ss_pred HHhhcCCCChHHHHHHHHHHHH
Confidence 9999999999999999999875
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.64 E-value=2.7e-13 Score=146.19 Aligned_cols=276 Identities=9% Similarity=-0.077 Sum_probs=191.6
Q ss_pred hCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc---------ccHHHHHHHH
Q 007648 55 ALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQ---------KFITKARRTF 125 (594)
Q Consensus 55 ~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~---------~~~~~A~~~~ 125 (594)
..|.+++.|..|..-... +. ..+.+++++|+..|++|++.+|+++..|..++.++... +++++|...+
T Consensus 251 ~~~~~~da~~~~lrg~~~-~~--~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~ 327 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHE-LN--QYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHA 327 (553)
T ss_pred CCCCChHHHHHHHHhHHH-HH--ccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHH
Confidence 456778877776654311 11 13457789999999999999999999998888776532 3478888888
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHHHHHHHHhcccHHHHHHHHHHhhcCcccccc
Q 007648 126 DRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSI 205 (594)
Q Consensus 126 ~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 205 (594)
++|+++.|.+ ...|..++.+....|++ ++|+..|+++++.+|++.
T Consensus 328 ~~Al~ldP~~--~~a~~~lg~~~~~~g~~-~~A~~~~~~Al~l~P~~~-------------------------------- 372 (553)
T PRK12370 328 IKATELDHNN--PQALGLLGLINTIHSEY-IVGSLLFKQANLLSPISA-------------------------------- 372 (553)
T ss_pred HHHHhcCCCC--HHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCCH--------------------------------
Confidence 8888888875 67777777777777777 888888888877777753
Q ss_pred cccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccch
Q 007648 206 KGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDF 285 (594)
Q Consensus 206 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 285 (594)
.+|..+|..+...|++++|...|++++...|.+...
T Consensus 373 --------------------------------------------~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~ 408 (553)
T PRK12370 373 --------------------------------------------DIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA 408 (553)
T ss_pred --------------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhh
Confidence 457777888888999999999999999988876421
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhh
Q 007648 286 SVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHL 365 (594)
Q Consensus 286 ~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (594)
..+...
T Consensus 409 -~~~~~~------------------------------------------------------------------------- 414 (553)
T PRK12370 409 -GITKLW------------------------------------------------------------------------- 414 (553)
T ss_pred -HHHHHH-------------------------------------------------------------------------
Confidence 000000
Q ss_pred hhhchhhhhhhhhccCCCChHHHHHHHHHhcCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHH
Q 007648 366 MNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVI 445 (594)
Q Consensus 366 ~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 445 (594)
+.+..|++++|+..+++++...+|. .+.++..+|.++...|++++|+..
T Consensus 415 --------------------------~~~~~g~~eeA~~~~~~~l~~~~p~-----~~~~~~~la~~l~~~G~~~eA~~~ 463 (553)
T PRK12370 415 --------------------------ITYYHTGIDDAIRLGDELRSQHLQD-----NPILLSMQVMFLSLKGKHELARKL 463 (553)
T ss_pred --------------------------HHHhccCHHHHHHHHHHHHHhcccc-----CHHHHHHHHHHHHhCCCHHHHHHH
Confidence 0011256677888888888754453 466788888888889999999999
Q ss_pred HHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHH
Q 007648 446 FDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLE 525 (594)
Q Consensus 446 ~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (594)
+++.....|.+. ..+..++..+...| ++|...+++.++..-... .+ ..| ...++
T Consensus 464 ~~~~~~~~~~~~----~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~-----------------~~-~~~--~~~~~ 517 (553)
T PRK12370 464 TKEISTQEITGL----IAVNLLYAEYCQNS--ERALPTIREFLESEQRID-----------------NN-PGL--LPLVL 517 (553)
T ss_pred HHHhhhccchhH----HHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh-----------------cC-chH--HHHHH
Confidence 999887888776 66666666666666 477777777655432100 01 111 44555
Q ss_pred HHhCChHHHHHHHHHHHhc
Q 007648 526 ESLGNLESTRAVYERILDL 544 (594)
Q Consensus 526 ~~~g~~~~A~~~~~~al~~ 544 (594)
.-.|+.+.+.-+ +++.+.
T Consensus 518 ~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 518 VAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHhhhHHHHHH-HHhhcc
Confidence 566777776666 665554
No 57
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.63 E-value=5.2e-12 Score=130.66 Aligned_cols=398 Identities=14% Similarity=0.065 Sum_probs=266.6
Q ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhC--CCCHHHH
Q 007648 99 HKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYD--PSHIEDF 176 (594)
Q Consensus 99 P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~--p~~~~~~ 176 (594)
-+++.+|..+.-+....|+++.+.+.|++++...-.. .+.|..+..-+...|.. ..|..+.+..+... |+++..+
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~--~e~w~~~als~saag~~-s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGE--HERWYQLALSYSAAGSD-SKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh--HHHHHHHHHHHHHhccc-hHHHHHHHhhcccccCCCcchHH
Confidence 4688999999999999999999999999999876654 68899888888888888 89999999999988 7777533
Q ss_pred H----HHHHhcccHHHHHHHHHHhhcCccc--ccccccchHHHHHHHHHHHhhccccccc----CcHHHHHHHHHhhccc
Q 007648 177 I----EFLVKSKLWQEAAERLASVLNDDQF--YSIKGKTKHRLWLELCDLLTTHATEISG----LNVDAIIRGGIRKFTD 246 (594)
Q Consensus 177 ~----~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~w~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~p~ 246 (594)
. .+..+.+.+.+++.+-.+++.+-.- -...|....-.-..|...-...+..... ...-+.++++++..|.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2 3456678888888888888841100 0011111111122222111111110000 1123567788887777
Q ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccc-----hHHHHHHHHHHHHHH--HHHHhcCCCCCCcccccccc
Q 007648 247 EVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRD-----FSVIFDSYSQFEEIM--VSAKMAKPDLSVEEEEDDEE 319 (594)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~l~~~~~~~e~~~--~~~~l~~~~~~~~~~~~~~~ 319 (594)
+ +.+.+.++-.|..+++.+.|.+..+++++.++.+.. ++.++.++-++.... ++.++++.|.+....
T Consensus 477 d-p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~----- 550 (799)
T KOG4162|consen 477 D-PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLM----- 550 (799)
T ss_pred C-chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhc-----
Confidence 6 788889999999999999999999999999766542 122333333333332 233444444322110
Q ss_pred cCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHH---------H
Q 007648 320 HGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWH---------R 390 (594)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~---------~ 390 (594)
+ .-.+++..+ ++...+..... +-...|- .
T Consensus 551 ---~-----------~~~~i~~~~---------~~~e~~l~t~~-------------------~~L~~we~~~~~q~~~~ 588 (799)
T KOG4162|consen 551 ---D-----------GKIHIELTF---------NDREEALDTCI-------------------HKLALWEAEYGVQQTLD 588 (799)
T ss_pred ---h-----------hhhhhhhhc---------ccHHHHHHHHH-------------------HHHHHHHhhhhHhhhhh
Confidence 0 000000000 01111111111 1112232 1
Q ss_pred HHHHhc---------CCchhHHHHHHHHHhccC------------CCc--------ccCCchHHHHHHHHHHHhcCCHHH
Q 007648 391 RVKIFE---------GNPTKQILTYTEAVRTVD------------PMK--------AVGKPHTLWVAFAKLYETYKDIAN 441 (594)
Q Consensus 391 ~~~~~~---------~~~~~a~~~y~~Ai~~~~------------~~~--------~~~~~~~~~~~~a~~~~~~~~~~~ 441 (594)
.+.... .+..++...+.++...+. |.. .+.....+|...+....+.++.+.
T Consensus 589 ~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~ 668 (799)
T KOG4162|consen 589 EGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDE 668 (799)
T ss_pred hhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchH
Confidence 122221 245556666665543211 100 011235789999999999999999
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHH
Q 007648 442 ARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFY 521 (594)
Q Consensus 442 A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (594)
|+..+.+|-+++|..+ .+|+..|......|+.++|.+.|..|+.++|+ ++..-...
T Consensus 669 a~~CL~Ea~~~~~l~~----~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~--------------------hv~s~~Al 724 (799)
T KOG4162|consen 669 ARSCLLEASKIDPLSA----SVYYLRGLLLEVKGQLEEAKEAFLVALALDPD--------------------HVPSMTAL 724 (799)
T ss_pred HHHHHHHHHhcchhhH----HHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC--------------------CcHHHHHH
Confidence 9999999999999999 99999999999999999999999999999996 66778888
Q ss_pred HHHHHHhCChHHHHH--HHHHHHhccCCchHHHHHHHHHHHHhchhhhhhhc
Q 007648 522 VDLEESLGNLESTRA--VYERILDLRIATPQIIINYALLLEVWTLLHVFLLH 571 (594)
Q Consensus 522 ~~~~~~~g~~~~A~~--~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~~~ 571 (594)
+.++.+.|+..-|.. .+.-|++++|.+|++|..+|.++.+.|+.++|-.+
T Consensus 725 a~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaec 776 (799)
T KOG4162|consen 725 AELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAEC 776 (799)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHH
Confidence 999999997766555 99999999999999999999999999999998643
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=5.3e-13 Score=133.37 Aligned_cols=164 Identities=15% Similarity=0.157 Sum_probs=128.7
Q ss_pred HHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHH
Q 007648 386 EQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASI 463 (594)
Q Consensus 386 ~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~ 463 (594)
++|..+|..+ ++..++|..+|.+|.+..+... .+.+++ |.=+.+.++++.|...|.+|+.+.|.+| -+
T Consensus 347 paWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h----lP~LYl--gmey~~t~n~kLAe~Ff~~A~ai~P~Dp----lv 416 (611)
T KOG1173|consen 347 PAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH----LPSLYL--GMEYMRTNNLKLAEKFFKQALAIAPSDP----LV 416 (611)
T ss_pred HHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc----chHHHH--HHHHHHhccHHHHHHHHHHHHhcCCCcc----hh
Confidence 3444444444 2566888999999999766532 344444 5556689999999999999999999999 77
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHh
Q 007648 464 WCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543 (594)
Q Consensus 464 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 543 (594)
....|-+....+.+++|..+|+.++..-++.. . .+. .-..+|..+|-++.++|.+++|+..|++||.
T Consensus 417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~-------~-----e~~-~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVL-------N-----EKI-FWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred hhhhhheeehHhhhHHHHHHHHHHHHHhhhcc-------c-----ccc-chhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77777777778999999999999995444210 0 000 1346789999999999999999999999999
Q ss_pred ccCCchHHHHHHHHHHHHhchhhhhhhcc
Q 007648 544 LRIATPQIIINYALLLEVWTLLHVFLLHV 572 (594)
Q Consensus 544 ~~P~~~~~~~~~~~~~~~~g~~~~a~~~~ 572 (594)
+.|.++.++...|.++...|+++.|+.++
T Consensus 484 l~~k~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 484 LSPKDASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred cCCCchhHHHHHHHHHHHhcChHHHHHHH
Confidence 99999999999999999999988887443
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3e-12 Score=128.12 Aligned_cols=273 Identities=10% Similarity=0.070 Sum_probs=177.6
Q ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHHH---
Q 007648 100 KMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDF--- 176 (594)
Q Consensus 100 ~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~--- 176 (594)
.++.+...-++.+....++....++++..+...|.+ .......+.-....|+. -+---+=.+.++..|+.+..|
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh--~~~~~~~ia~l~el~~~-n~Lf~lsh~LV~~yP~~a~sW~aV 318 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFH--LPCLPLHIACLYELGKS-NKLFLLSHKLVDLYPSKALSWFAV 318 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCC--cchHHHHHHHHHHhccc-chHHHHHHHHHHhCCCCCcchhhH
Confidence 556666677777777777777777777777777753 23333333333333433 222222234555667666432
Q ss_pred HHHHHhcccHHHHHHHHHHhhc-CcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHH
Q 007648 177 IEFLVKSKLWQEAAERLASVLN-DDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSL 255 (594)
Q Consensus 177 ~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l 255 (594)
+-+|...|.+.+|+..|.++.. +|. +...|+.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~----------------------------------------------fgpaWl~f 352 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT----------------------------------------------FGPAWLAF 352 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc----------------------------------------------ccHHHHHH
Confidence 3445566777777777766652 221 24689999
Q ss_pred HHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhh
Q 007648 256 ADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLS 335 (594)
Q Consensus 256 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (594)
|..+...|.-++|..+|-.|-+..|..+. -.+|.+.....-.
T Consensus 353 ghsfa~e~EhdQAmaaY~tAarl~~G~hl-P~LYlgmey~~t~------------------------------------- 394 (611)
T KOG1173|consen 353 GHSFAGEGEHDQAMAAYFTAARLMPGCHL-PSLYLGMEYMRTN------------------------------------- 394 (611)
T ss_pred hHHhhhcchHHHHHHHHHHHHHhccCCcc-hHHHHHHHHHHhc-------------------------------------
Confidence 99999999999999999999999988653 2444332111000
Q ss_pred HHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhcc
Q 007648 336 MAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTV 413 (594)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~ 413 (594)
-+..+-.-|.+ ++...|+++-....+|.+.- +.+.+|...|+.++..+
T Consensus 395 ------------------n~kLAe~Ff~~------------A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~i 444 (611)
T KOG1173|consen 395 ------------------NLKLAEKFFKQ------------ALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVI 444 (611)
T ss_pred ------------------cHHHHHHHHHH------------HHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHh
Confidence 01112222333 57788888888888877653 67888888888888543
Q ss_pred CCCcc-cCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCc
Q 007648 414 DPMKA-VGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS 492 (594)
Q Consensus 414 ~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 492 (594)
+.... .......|.++|..+.+.+.+++|+..|++||...|.++ +.+-..|.++...|+++.|+..|-+++.+.|
T Consensus 445 k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~----~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 445 KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDA----STHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCch----hHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 22111 112456688888888888888888888888888888888 6666666666678888888888888888888
Q ss_pred h
Q 007648 493 V 493 (594)
Q Consensus 493 ~ 493 (594)
+
T Consensus 521 ~ 521 (611)
T KOG1173|consen 521 D 521 (611)
T ss_pred c
Confidence 5
No 60
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.58 E-value=2.1e-12 Score=125.23 Aligned_cols=431 Identities=12% Similarity=0.040 Sum_probs=229.4
Q ss_pred hhHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHHcCCchH
Q 007648 82 PEYETLNNTFERALVT--MHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQH---DRIWEIYLRFVEQEGIPIE 156 (594)
Q Consensus 82 ~~~~~A~~~~~~al~~--~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~---~~~w~~~~~~~~~~~~~~~ 156 (594)
.-+.+|...|+-.++. +|++..+-...++++.++.++.+|.+.|+-||...|.-+. ..+....+-..-+.|.+ +
T Consensus 215 dm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy-~ 293 (840)
T KOG2003|consen 215 DMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQY-D 293 (840)
T ss_pred HHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccc-h
Confidence 4456777777777764 6999889899999999999999999999999999996321 12222222222357888 9
Q ss_pred HHHHHHHHHHhhCCCCHHHH--HHHHHhcccHHHHHHHHHHhhcCcc------cccccccchHHHH-----HH-HHHHHh
Q 007648 157 TSLRVYRRYLKYDPSHIEDF--IEFLVKSKLWQEAAERLASVLNDDQ------FYSIKGKTKHRLW-----LE-LCDLLT 222 (594)
Q Consensus 157 ~a~~~~~~~l~~~p~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~~~w-----~~-~~~~~~ 222 (594)
+|+..|+.+++..|+....+ .-.+..-|+-++-.+.|++++.-|. |........-.+. .. +.++++
T Consensus 294 dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek 373 (840)
T KOG2003|consen 294 DAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEK 373 (840)
T ss_pred hhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHH
Confidence 99999999999999987543 3456678899999999999996443 3322211110111 00 122222
Q ss_pred hcccccccCcHHHHHHHHHh-------------------------hccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 007648 223 THATEISGLNVDAIIRGGIR-------------------------KFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMM 277 (594)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~-------------------------~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (594)
++.. .+++.+-.+.+ ..|- ..++-+..+.-+.++|+++.|+++++-.-+
T Consensus 374 ~~ka-----~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~l-a~dlei~ka~~~lk~~d~~~aieilkv~~~ 447 (840)
T KOG2003|consen 374 ENKA-----DAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAEL-AIDLEINKAGELLKNGDIEGAIEILKVFEK 447 (840)
T ss_pred hhhh-----hHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhh-hhhhhhhHHHHHHhccCHHHHHHHHHHHHh
Confidence 2211 11111111100 0010 124556667788899999999988764433
Q ss_pred hhccccchHHHHHHHHHHHHH---------HHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhcccc
Q 007648 278 TVVTVRDFSVIFDSYSQFEEI---------MVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFW 348 (594)
Q Consensus 278 ~~p~~~~~~~l~~~~~~~e~~---------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (594)
.+......+.--...+.|... ..+.++..- +|+.. .+. ..+..
T Consensus 448 kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-----------------------ryn~~--a~~---nkgn~ 499 (840)
T KOG2003|consen 448 KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-----------------------RYNAA--ALT---NKGNI 499 (840)
T ss_pred ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-----------------------ccCHH--Hhh---cCCce
Confidence 221111000000011111110 000000000 00000 000 00000
Q ss_pred ccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHH
Q 007648 349 LHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLW 426 (594)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~ 426 (594)
.-+.++++++..-|++ +|..+..+.++.+..+.... |+.++|+.+|-+.-..+- ...++.
T Consensus 500 ~f~ngd~dka~~~yke------------al~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~------nn~evl 561 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKE------------ALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL------NNAEVL 561 (840)
T ss_pred eeecCcHHHHHHHHHH------------HHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH------hhHHHH
Confidence 0112344444444444 34444455555555444432 455555555544221110 134455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChh
Q 007648 427 VAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEP 506 (594)
Q Consensus 427 ~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 506 (594)
+.++.+|+...+...|+..+-++..+.|.+| .+.-.++.++-+.|+-.+|-+.+=......|.
T Consensus 562 ~qianiye~led~aqaie~~~q~~slip~dp----~ilskl~dlydqegdksqafq~~ydsyryfp~------------- 624 (840)
T KOG2003|consen 562 VQIANIYELLEDPAQAIELLMQANSLIPNDP----AILSKLADLYDQEGDKSQAFQCHYDSYRYFPC------------- 624 (840)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHhcccCCCCH----HHHHHHHHHhhcccchhhhhhhhhhcccccCc-------------
Confidence 5555555555555555555555555555555 44445555555555555555555555555553
Q ss_pred hhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhhhccc-----Ccccchhh
Q 007648 507 VQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFLLHVP-----FTFSGLCM 581 (594)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~~~~~-----~~~~~~~~ 581 (594)
+.....-++..|....-.++|+..|+||--..|+...--...+.++++.|+|+.|+..|+ +-...=|.
T Consensus 625 -------nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldcl 697 (840)
T KOG2003|consen 625 -------NIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCL 697 (840)
T ss_pred -------chHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHH
Confidence 222222233344444446889999999988888775444567888999999999985443 34444443
Q ss_pred hhhhheeeccc
Q 007648 582 FTFFFTVSCCT 592 (594)
Q Consensus 582 ~~~~~~~~~~~ 592 (594)
.|.|..|+
T Consensus 698 ---kflvri~~ 705 (840)
T KOG2003|consen 698 ---KFLVRIAG 705 (840)
T ss_pred ---HHHHHHhc
Confidence 46666665
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.56 E-value=2.3e-13 Score=146.81 Aligned_cols=176 Identities=7% Similarity=0.014 Sum_probs=142.0
Q ss_pred hHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc-----------CCchhHHHHHHHHHhccCCCcccCCc
Q 007648 354 DVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE-----------GNPTKQILTYTEAVRTVDPMKAVGKP 422 (594)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~-----------~~~~~a~~~y~~Ai~~~~~~~~~~~~ 422 (594)
....++..|++ ++..+|+++.+|..++..+. +++++|...+++|+.. +|+ .
T Consensus 276 ~~~~A~~~~~~------------Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l-dP~-----~ 337 (553)
T PRK12370 276 SLQQALKLLTQ------------CVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL-DHN-----N 337 (553)
T ss_pred HHHHHHHHHHH------------HHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc-CCC-----C
Confidence 45567777888 58999999999988776532 3478999999999996 554 6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhcc
Q 007648 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAAD 502 (594)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 502 (594)
+.+|..+|.++...|++++|...|++|++.+|+++ .+|+.+|.++...|++++|...++++++++|.+
T Consensus 338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~----~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~-------- 405 (553)
T PRK12370 338 PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISA----DIKYYYGWNLFMAGQLEEALQTINECLKLDPTR-------- 405 (553)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--------
Confidence 78999999999999999999999999999999999 899999999999999999999999999999952
Q ss_pred CChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHhchhhhhhhc
Q 007648 503 GNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR-IATPQIIINYALLLEVWTLLHVFLLH 571 (594)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~~~~~~~~~g~~~~a~~~ 571 (594)
+..+...+.+....|++++|+..+++++... |++|..+.+++.++...|++++|...
T Consensus 406 ------------~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~ 463 (553)
T PRK12370 406 ------------AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKL 463 (553)
T ss_pred ------------hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 2222333334445677788888888877664 67777777788888778887777644
No 62
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=4.8e-11 Score=119.14 Aligned_cols=412 Identities=13% Similarity=0.099 Sum_probs=226.2
Q ss_pred CCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHH
Q 007648 79 ITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETS 158 (594)
Q Consensus 79 ~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a 158 (594)
.+.|+++.|+..|..|+.++|.+.-++..-...+..+|++++|.+=-.+.++++|.. .+-|...+.-...+|++ ++|
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w--~kgy~r~Gaa~~~lg~~-~eA 89 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW--AKGYSRKGAALFGLGDY-EEA 89 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch--hhHHHHhHHHHHhcccH-HHH
Confidence 567999999999999999999999999999999999999999999999999999975 67788888888889999 999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHhcccHHHHHHHHHHhhcCccccccc---c----cchHHHHHHHHHHHhhccccccc-
Q 007648 159 LRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIK---G----KTKHRLWLELCDLLTTHATEISG- 230 (594)
Q Consensus 159 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~----~~~~~~w~~~~~~~~~~~~~~~~- 230 (594)
+..|.+.|+.+|++...+..+-... ..+.+. .+....|.+.... | ...-..+..+...+..+|..+..
T Consensus 90 ~~ay~~GL~~d~~n~~L~~gl~~a~-~~~~~~---~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 90 ILAYSEGLEKDPSNKQLKTGLAQAY-LEDYAA---DQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHhhcCCchHHHHHhHHHhh-hHHHHh---hhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 9999999999999985332211100 000000 1111111111000 0 00001122222222222221100
Q ss_pred CcHHHHH-----------------------------HHHHhhccc---h--------hHHHHHHHHHHHHHhccHHHHHH
Q 007648 231 LNVDAII-----------------------------RGGIRKFTD---E--------VGRLWTSLADYYIRRELFEKARD 270 (594)
Q Consensus 231 ~~~~~~~-----------------------------~~~~~~~p~---~--------~~~~~~~la~~~~~~g~~~~A~~ 270 (594)
.+...+. .+....+|. . ...-.-.+|....+..+++.|.+
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 0000000 000000000 0 01234566777778889999999
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhcccccc
Q 007648 271 IFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLH 350 (594)
Q Consensus 271 ~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (594)
.|..++... ++..+.. -.+.+.++......... .. +.+++.+. ..+..+......+-+ .+... .
T Consensus 246 ~y~~a~el~-~~it~~~-n~aA~~~e~~~~~~c~~--~c----~~a~E~gr-----e~rad~klIak~~~r-~g~a~--~ 309 (539)
T KOG0548|consen 246 HYAKALELA-TDITYLN-NIAAVYLERGKYAECIE--LC----EKAVEVGR-----ELRADYKLIAKALAR-LGNAY--T 309 (539)
T ss_pred HHHHHHhHh-hhhHHHH-HHHHHHHhccHHHHhhc--ch----HHHHHHhH-----HHHHHHHHHHHHHHH-hhhhh--h
Confidence 999999887 4432110 01122233221100000 00 00111111 111111111111111 00000 0
Q ss_pred chhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhcCCchhHHHHHHHHHhccCCCcccCCchHHHHHHH
Q 007648 351 DVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFA 430 (594)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a 430 (594)
..++...++..|.+++.. ...|+. ...+ +..+++....++.-- +.|. ...---.-|
T Consensus 310 k~~~~~~ai~~~~kaLte----------~Rt~~~---ls~l-----k~~Ek~~k~~e~~a~-~~pe-----~A~e~r~kG 365 (539)
T KOG0548|consen 310 KREDYEGAIKYYQKALTE----------HRTPDL---LSKL-----KEAEKALKEAERKAY-INPE-----KAEEEREKG 365 (539)
T ss_pred hHHhHHHHHHHHHHHhhh----------hcCHHH---HHHH-----HHHHHHHHHHHHHHh-hChh-----HHHHHHHHH
Confidence 011222233333332110 001110 0000 112222222222111 1221 122223336
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHH
Q 007648 431 KLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMK 510 (594)
Q Consensus 431 ~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 510 (594)
+-+...|++..|+..|.+|++.+|+++ .+|...+.++.+.|++..|.+=-+.+++++|+
T Consensus 366 ne~Fk~gdy~~Av~~YteAIkr~P~Da----~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~----------------- 424 (539)
T KOG0548|consen 366 NEAFKKGDYPEAVKHYTEAIKRDPEDA----RLYSNRAACYLKLGEYPEALKDAKKCIELDPN----------------- 424 (539)
T ss_pred HHHHhccCHHHHHHHHHHHHhcCCchh----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-----------------
Confidence 666677888888888888888888888 78888888888888888888888888888885
Q ss_pred hhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Q 007648 511 LHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEV 561 (594)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~ 561 (594)
....|..-+.++..+.++++|.+.|+.+++.+|++.++...+.++...
T Consensus 425 ---~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 425 ---FIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 346666667777777888888888888888888888888888777765
No 63
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=5.9e-11 Score=123.83 Aligned_cols=431 Identities=19% Similarity=0.255 Sum_probs=274.3
Q ss_pred hHhHHHHhhCCCCHHHHHHHHHHH-HcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHH
Q 007648 14 LLYEEELLRNPFSLKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFE 92 (594)
Q Consensus 14 ~~~e~~l~~~P~~~~~w~~~~~~~-~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 92 (594)
..++..+..+++++.....+|... +.|++++.+..-..+....|.++.+|+.|+.-++.- ++.++...+...|+
T Consensus 100 ~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~m-----t~s~~~~~v~~~~e 174 (881)
T KOG0128|consen 100 RTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSM-----TQSEERKEVEELFE 174 (881)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh-----ccCcchhHHHHHHH
Confidence 457788888999999999899866 489999999999999999999999999999887654 45588899999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcc-------cHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHc--CCchHHHHHH
Q 007648 93 RALVTMHKMPRIWIMYLETLTSQK-------FITKARRTFDRALCALPVT--QHDRIWEIYLRFVEQE--GIPIETSLRV 161 (594)
Q Consensus 93 ~al~~~P~~~~lw~~y~~~~~~~~-------~~~~A~~~~~ral~~~p~~--~~~~~w~~~~~~~~~~--~~~~~~a~~~ 161 (594)
+|| .+..++.+|..|+.+....+ +++.-|.+|++|+...... ....+|..|..++... +...++...+
T Consensus 175 kal-~dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~ 253 (881)
T KOG0128|consen 175 KAL-GDYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIAL 253 (881)
T ss_pred HHh-cccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999 57899999999999998754 5788999999999976532 2368999999987532 1111456777
Q ss_pred HHHHHhhCCCCHH----HHHH------HHHhcccHHHHHHHHHHhhcCcccc--cccccchHHHHHHHHHHHhhcccccc
Q 007648 162 YRRYLKYDPSHIE----DFIE------FLVKSKLWQEAAERLASVLNDDQFY--SIKGKTKHRLWLELCDLLTTHATEIS 229 (594)
Q Consensus 162 ~~~~l~~~p~~~~----~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~w~~~~~~~~~~~~~~~ 229 (594)
+.+.+... -+.. .|.. ......+++.+.+.+.+++- .|. ........+.|..|+++++..++++
T Consensus 254 ~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~--~~e~~~q~~~~~~q~~~~yidfe~~~G~p~- 329 (881)
T KOG0128|consen 254 FVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILF--KFERLVQKEPIKDQEWMSYIDFEKKSGDPV- 329 (881)
T ss_pred HHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHH--HHHHHhhhhHHHHHHHHHHHHHHHhcCCch-
Confidence 77777664 3332 1110 11122344444444333331 000 0001124688999999999888752
Q ss_pred cCcHHHHHHHHHhhccchhHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhhccccchHHHHHHHH-HHHHHHHHHHhcCC
Q 007648 230 GLNVDAIIRGGIRKFTDEVGRLWTSLADYYIR-RELFEKARDIFEEGMMTVVTVRDFSVIFDSYS-QFEEIMVSAKMAKP 307 (594)
Q Consensus 230 ~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~-~~e~~~~~~~l~~~ 307 (594)
...-+.++++...+.. ..+|+.++.+... .+-.+.+..++-+++..+|..- .+|..+. .+++.
T Consensus 330 --ri~l~~eR~~~E~~~~-~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tg---dL~~rallAleR~--------- 394 (881)
T KOG0128|consen 330 --RIQLIEERAVAEMVLD-RALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTG---DLWKRALLALERN--------- 394 (881)
T ss_pred --HHHHHHHHHHHhcccc-HHHHhhhhhhcccccccccccccccchhhcCCchHH---HHHHHHHHHHHhc---------
Confidence 3345567777776665 6899999998854 4455667888999998888764 4555544 22221
Q ss_pred CCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHH
Q 007648 308 DLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQ 387 (594)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 387 (594)
+.... + .+..+++.+. ..+.++...|.... ...+-.+
T Consensus 395 re~~~---------------v------I~~~l~~~ls--------~~~~l~~~~~~~rr-----------~~~~~~~--- 431 (881)
T KOG0128|consen 395 REEIT---------------V------IVQNLEKDLS--------MTVELHNDYLAYRR-----------RCTNIID--- 431 (881)
T ss_pred Ccchh---------------h------HHHHHHHHHH--------HHHHHHHHHHHHHH-----------hhcccch---
Confidence 00000 0 0011111000 00000000000000 0000000
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhccCCCcc--cCCchHHHHHHHHHHH-hcCCHHHHHHHHHHHHhccCCChhhHHHHH
Q 007648 388 WHRRVKIFEGNPTKQILTYTEAVRTVDPMKA--VGKPHTLWVAFAKLYE-TYKDIANARVIFDKAVQVNYKTVDHLASIW 464 (594)
Q Consensus 388 ~~~~~~~~~~~~~~a~~~y~~Ai~~~~~~~~--~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~kal~~~p~~~~~~~~~~ 464 (594)
..+++..+..|+.|...+.+... ..........+|+++. ..++.+.||.+....+.....+. ...|
T Consensus 432 --------s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~i---ag~W 500 (881)
T KOG0128|consen 432 --------SQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSI---AGKW 500 (881)
T ss_pred --------hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchH---HHHH
Confidence 02344555666666543211100 0113456677888888 57889999999998887655554 1389
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcCC--chhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHH
Q 007648 465 CEWAEMELRHKNFKGALELMRRATAEP--SVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERIL 542 (594)
Q Consensus 465 ~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 542 (594)
+.++.++...|+.+.||.++++|+... |++ .-.++..|-.++...|.++....+-++.+
T Consensus 501 le~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~-------------------~~ev~~~~~r~Ere~gtl~~~~~~~~~~~ 561 (881)
T KOG0128|consen 501 LEAINLEREYGDGPSARKVLRKAYSQVVDPED-------------------ALEVLEFFRRFEREYGTLESFDLCPEKVL 561 (881)
T ss_pred HHHHhHHHHhCCchhHHHHHHHHHhcCcCchh-------------------HHHHHHHHHHHHhccccHHHHhhhHHhhc
Confidence 999999998999999999999888653 321 12556777788888888877666555433
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.55 E-value=1e-12 Score=130.13 Aligned_cols=181 Identities=15% Similarity=0.109 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHH
Q 007648 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRV 161 (594)
Q Consensus 82 ~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~ 161 (594)
|+.+.|+..|++|++.+|+++.+|..++..+...|+++.|...|++++++.|.+ ...|...+......|++ ++|.+.
T Consensus 78 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~--~~a~~~lg~~l~~~g~~-~eA~~~ 154 (296)
T PRK11189 78 GLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY--NYAYLNRGIALYYGGRY-ELAQDD 154 (296)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCH-HHHHHH
Confidence 445555555555555555555555555555555555555555555555555543 34444444444444555 555555
Q ss_pred HHHHHhhCCCCHH--HHHHHHHhcccHHHHHHHHHHhhc--CcccccccccchHHHHHHHHHHHhhcccccccCcHHHHH
Q 007648 162 YRRYLKYDPSHIE--DFIEFLVKSKLWQEAAERLASVLN--DDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAII 237 (594)
Q Consensus 162 ~~~~l~~~p~~~~--~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 237 (594)
|+++++.+|++.. .+..+....+++++|...|++.+. +++. . .|. ...+. .++ ......+
T Consensus 155 ~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~-------~--~~~-~~~~~--lg~----~~~~~~~ 218 (296)
T PRK11189 155 LLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQ-------W--GWN-IVEFY--LGK----ISEETLM 218 (296)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccc-------c--HHH-HHHHH--ccC----CCHHHHH
Confidence 5555555555442 111222334445555555544331 0000 0 010 00000 000 0001111
Q ss_pred HHHH-------hhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccc
Q 007648 238 RGGI-------RKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTV 282 (594)
Q Consensus 238 ~~~~-------~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 282 (594)
+.+. ...|. ..++|+.+|..+...|++++|+..|++++...|.+
T Consensus 219 ~~~~~~~~~~~~l~~~-~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 219 ERLKAGATDNTELAER-LCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred HHHHhcCCCcHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 1111 11222 25789999999999999999999999999998743
No 65
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.55 E-value=6.1e-11 Score=122.64 Aligned_cols=190 Identities=14% Similarity=0.159 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHHHHHhcCCChHHHHHH-HHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHH
Q 007648 82 PEYETLNNTFERALVTMHKMPRIWIMY-LETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLR 160 (594)
Q Consensus 82 ~~~~~A~~~~~~al~~~P~~~~lw~~y-~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~ 160 (594)
|+++.|++...++-+..+ +|.+.... +....++|+++.|...|+++.+..|++. .......+.+....|++ +.|.+
T Consensus 98 Gd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~-~~~~l~~a~l~l~~g~~-~~Al~ 174 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ-LPVEITRVRIQLARNEN-HAARH 174 (398)
T ss_pred CCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch-HHHHHHHHHHHHHCCCH-HHHHH
Confidence 566666655554443322 23333333 3333556666666666666666555531 11111224444555666 66666
Q ss_pred HHHHHHhhCCCCHH---HHHHHHHhcccHHHHHHHHHHhhcCcccccc-cccchHHHHHHHHHHHhhcccccccCcHHHH
Q 007648 161 VYRRYLKYDPSHIE---DFIEFLVKSKLWQEAAERLASVLNDDQFYSI-KGKTKHRLWLELCDLLTTHATEISGLNVDAI 236 (594)
Q Consensus 161 ~~~~~l~~~p~~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 236 (594)
.++++.+..|+++. ....++...|++++|..++.++.+....... ........|..+..-.....+. ....+.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~---~~l~~~ 251 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS---EGLKRW 251 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH---HHHHHH
Confidence 66666666666664 2235556666666666666555521100000 0000001111111110000000 001111
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 007648 237 IRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMT 278 (594)
Q Consensus 237 ~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (594)
.+..-...|++ +.++..++..+...|+.++|.++.+++++.
T Consensus 252 w~~lp~~~~~~-~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~ 292 (398)
T PRK10747 252 WKNQSRKTRHQ-VALQVAMAEHLIECDDHDTAQQIILDGLKR 292 (398)
T ss_pred HHhCCHHHhCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 11111122322 567888888888888888888888887774
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.53 E-value=3.7e-12 Score=114.02 Aligned_cols=207 Identities=13% Similarity=0.164 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhh
Q 007648 249 GRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDI 328 (594)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 328 (594)
..+.+.+|.-|.++|+...|++-+++||+++|+... .|.....+-..
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~---a~~~~A~~Yq~------------------------------ 81 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYL---AHLVRAHYYQK------------------------------ 81 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH---HHHHHHHHHHH------------------------------
Confidence 567899999999999999999999999999998763 22222221111
Q ss_pred HhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CCchhHHHHH
Q 007648 329 RLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTY 406 (594)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y 406 (594)
.+..+.+...|++ ++..+|++.++.+++|.++. |.+++|.+.|
T Consensus 82 -----------------------~Ge~~~A~e~Yrk------------Alsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F 126 (250)
T COG3063 82 -----------------------LGENDLADESYRK------------ALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQF 126 (250)
T ss_pred -----------------------cCChhhHHHHHHH------------HHhcCCCccchhhhhhHHHHhCCChHHHHHHH
Confidence 1234445677888 58999999999999999984 7899999999
Q ss_pred HHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007648 407 TEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRR 486 (594)
Q Consensus 407 ~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 486 (594)
++|+. +|. .+..+..|-++|-|..+.|+.+.|+..|+|+|+.+|+++ .....++..++..|++-.|+..+++
T Consensus 127 ~~Al~--~P~--Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~----~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 127 ERALA--DPA--YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP----PALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred HHHHh--CCC--CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC----hHHHHHHHHHHhcccchHHHHHHHH
Confidence 99997 442 344578899999999999999999999999999999999 8888899999999999999999999
Q ss_pred HhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHH
Q 007648 487 ATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI 551 (594)
Q Consensus 487 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 551 (594)
-...-+- +-..+|+. +.+..++|+-+.|-+.=.+.-..+|..++.
T Consensus 199 ~~~~~~~-------------------~A~sL~L~-iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 199 YQQRGGA-------------------QAESLLLG-IRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHhcccc-------------------cHHHHHHH-HHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 8876552 12356655 688899999999888888877789988753
No 67
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.52 E-value=8e-11 Score=110.87 Aligned_cols=324 Identities=12% Similarity=0.115 Sum_probs=209.6
Q ss_pred CCCCHHHHHHHHHH-HHcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCC
Q 007648 23 NPFSLKLWWRYLVA-KREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKM 101 (594)
Q Consensus 23 ~P~~~~~w~~~~~~-~~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~ 101 (594)
+|.+.+--+.+.+- ...|.+..|...|-.|++.+|++.....+-+... ...|+-..|..-++++|++-|+-
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~y--------LAmGksk~al~Dl~rVlelKpDF 105 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVY--------LAMGKSKAALQDLSRVLELKPDF 105 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHH--------hhhcCCccchhhHHHHHhcCccH
Confidence 45566666666663 3367777888888888888887765544433322 34466677788888888888888
Q ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCH-H----------HHHHHHHHHHH--HcCCchHHHHHHHHHHHhh
Q 007648 102 PRIWIMYLETLTSQKFITKARRTFDRALCALPVTQH-D----------RIWEIYLRFVE--QEGIPIETSLRVYRRYLKY 168 (594)
Q Consensus 102 ~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~-~----------~~w~~~~~~~~--~~~~~~~~a~~~~~~~l~~ 168 (594)
...-+.-+.+++++|.++.|..-|+..|+..|.+.. . +-|...-++.. .-|+. ..|+......+++
T Consensus 106 ~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~-~~ai~~i~~llEi 184 (504)
T KOG0624|consen 106 MAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDC-QNAIEMITHLLEI 184 (504)
T ss_pred HHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCch-hhHHHHHHHHHhc
Confidence 888888888888888888888888888888885421 1 12222212211 12444 5677777777777
Q ss_pred CCCCHHH---HHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhcc
Q 007648 169 DPSHIED---FIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFT 245 (594)
Q Consensus 169 ~p~~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (594)
.|=+... -+..|...|++.+|+.-++.+- +...
T Consensus 185 ~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~as--------------------------------------------kLs~ 220 (504)
T KOG0624|consen 185 QPWDASLRQARAKCYIAEGEPKKAIHDLKQAS--------------------------------------------KLSQ 220 (504)
T ss_pred CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHH--------------------------------------------hccc
Confidence 7766542 2356666666666666544332 1111
Q ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcch
Q 007648 246 DEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAED 325 (594)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 325 (594)
++ .+..+..+.++...|+.+.+....+++|+.+|++. ..|-.|-.+.+-..
T Consensus 221 Dn-Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK---~Cf~~YKklkKv~K------------------------- 271 (504)
T KOG0624|consen 221 DN-TEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK---LCFPFYKKLKKVVK------------------------- 271 (504)
T ss_pred cc-hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh---hHHHHHHHHHHHHH-------------------------
Confidence 22 56788888999999999999999999999999876 34433332222110
Q ss_pred hhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhcCCchhHHHH
Q 007648 326 EDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILT 405 (594)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~ 405 (594)
.+..-+++ +..+.+.++++.
T Consensus 272 --------------------------------~les~e~~----------------------------ie~~~~t~cle~ 291 (504)
T KOG0624|consen 272 --------------------------------SLESAEQA----------------------------IEEKHWTECLEA 291 (504)
T ss_pred --------------------------------HHHHHHHH----------------------------HhhhhHHHHHHH
Confidence 00001110 112344556666
Q ss_pred HHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHH
Q 007648 406 YTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMR 485 (594)
Q Consensus 406 y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 485 (594)
+++.++..|..... .....--+..++...|++.+|++...++|..+|++. .+++.-+..++-...++.|+.-|+
T Consensus 292 ge~vlk~ep~~~~i--r~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv----~~l~dRAeA~l~dE~YD~AI~dye 365 (504)
T KOG0624|consen 292 GEKVLKNEPEETMI--RYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDV----QVLCDRAEAYLGDEMYDDAIHDYE 365 (504)
T ss_pred HHHHHhcCCcccce--eeeeeheeeecccccCCHHHHHHHHHHHHhcCchHH----HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 76666642221111 111222334566678899999999999999999998 888888888877888999999999
Q ss_pred HHhcCCchh
Q 007648 486 RATAEPSVE 494 (594)
Q Consensus 486 ~al~~~p~~ 494 (594)
+|.+.+|++
T Consensus 366 ~A~e~n~sn 374 (504)
T KOG0624|consen 366 KALELNESN 374 (504)
T ss_pred HHHhcCccc
Confidence 999999974
No 68
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=1.5e-12 Score=130.81 Aligned_cols=91 Identities=12% Similarity=0.110 Sum_probs=62.0
Q ss_pred CCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChh-
Q 007648 382 PHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVD- 458 (594)
Q Consensus 382 p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~- 458 (594)
|+|...|.++|..+. .+..+|+..|.+|++..|. ++.+|+++|..+...|.|++|.+.|-.||...+.+..
T Consensus 461 Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~------yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~ 534 (579)
T KOG1125|consen 461 PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG------YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNH 534 (579)
T ss_pred CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC------eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccccc
Confidence 344444444444443 3567899999999996443 8899999999999999999999999999987665221
Q ss_pred -----hHHHHHHHHHHHHHhcCChH
Q 007648 459 -----HLASIWCEWAEMELRHKNFK 478 (594)
Q Consensus 459 -----~~~~~~~~~~~~~~~~~~~~ 478 (594)
.-..+|-.+-.++...++.|
T Consensus 535 ~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 535 NKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred ccCCcchHHHHHHHHHHHHHcCCch
Confidence 11235655544444444443
No 69
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1e-10 Score=116.87 Aligned_cols=353 Identities=14% Similarity=0.149 Sum_probs=217.2
Q ss_pred cCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccH
Q 007648 39 EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFI 118 (594)
Q Consensus 39 ~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~ 118 (594)
+|+++.|+..|-.++...|.+.-++..-.... ...++|++|..--.+.++++|+=++.|...|....-.|++
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~--------a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPTNHVLYSNRSAAY--------ASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred cccHHHHHHHHHHHHccCCCccchhcchHHHH--------HHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 69999999999999999998776665544443 4568999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH-----------------cCCch------HHHHHHHHHHHhhCCC----
Q 007648 119 TKARRTFDRALCALPVTQHDRIWEIYLRFVEQ-----------------EGIPI------ETSLRVYRRYLKYDPS---- 171 (594)
Q Consensus 119 ~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~-----------------~~~~~------~~a~~~~~~~l~~~p~---- 171 (594)
++|+..|.++|+..|.+ ..+...+.+.+.. .+++. ..+.......++.+|.
T Consensus 87 ~eA~~ay~~GL~~d~~n--~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSN--KQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHhhcCCch--HHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 99999999999999986 3443333332210 01110 0010000111111111
Q ss_pred ------------------------------------------------C-HH------------HHHHHHHhcccHHHHH
Q 007648 172 ------------------------------------------------H-IE------------DFIEFLVKSKLWQEAA 190 (594)
Q Consensus 172 ------------------------------------------------~-~~------------~~~~~~~~~~~~~~a~ 190 (594)
+ .+ .+++.....+++..++
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 0 00 1122334455777788
Q ss_pred HHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccc--hhHHHHHHHHHHHHHhccHHHH
Q 007648 191 ERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTD--EVGRLWTSLADYYIRRELFEKA 268 (594)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~la~~~~~~g~~~~A 268 (594)
+.|..++.-..-.... ......+.+...+..... .+++.++.+.+...+ ........+|..+...++++.|
T Consensus 245 q~y~~a~el~~~it~~-~n~aA~~~e~~~~~~c~~------~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~a 317 (539)
T KOG0548|consen 245 QHYAKALELATDITYL-NNIAAVYLERGKYAECIE------LCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGA 317 (539)
T ss_pred HHHHHHHhHhhhhHHH-HHHHHHHHhccHHHHhhc------chHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHH
Confidence 8887777311100000 000112222222222111 122223222211100 1123344467788888999999
Q ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhcccc
Q 007648 269 RDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFW 348 (594)
Q Consensus 269 ~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (594)
+..|+++|....+.. +....-..|+.
T Consensus 318 i~~~~kaLte~Rt~~----~ls~lk~~Ek~-------------------------------------------------- 343 (539)
T KOG0548|consen 318 IKYYQKALTEHRTPD----LLSKLKEAEKA-------------------------------------------------- 343 (539)
T ss_pred HHHHHHHhhhhcCHH----HHHHHHHHHHH--------------------------------------------------
Confidence 999999886543311 11111111111
Q ss_pred ccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHH
Q 007648 349 LHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLW 426 (594)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~ 426 (594)
....+.. .-.+|.-.+.-...|.-. .|++..|+..|.+||+.. |+ .+.+|
T Consensus 344 ----------~k~~e~~------------a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~-----Da~lY 395 (539)
T KOG0548|consen 344 ----------LKEAERK------------AYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PE-----DARLY 395 (539)
T ss_pred ----------HHHHHHH------------HhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cc-----hhHHH
Confidence 1111110 111222222222223222 378999999999999974 43 57889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchh
Q 007648 427 VAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVE 494 (594)
Q Consensus 427 ~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 494 (594)
.+-|-++.+.|.+..|.+-.+++++.+|+.+ ..|++-|..+..+++++.|.+.|+.|++.+|++
T Consensus 396 sNRAac~~kL~~~~~aL~Da~~~ieL~p~~~----kgy~RKg~al~~mk~ydkAleay~eale~dp~~ 459 (539)
T KOG0548|consen 396 SNRAACYLKLGEYPEALKDAKKCIELDPNFI----KAYLRKGAALRAMKEYDKALEAYQEALELDPSN 459 (539)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 9999999999999999999999999999998 999999999988999999999999999999963
No 70
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.50 E-value=7.9e-10 Score=112.67 Aligned_cols=468 Identities=14% Similarity=0.061 Sum_probs=255.6
Q ss_pred CCHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHH
Q 007648 25 FSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRI 104 (594)
Q Consensus 25 ~~~~~w~~~~~~~~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~l 104 (594)
.-...+.+.++....+.+.+..+..+..|+.+|..++-.-.- .+.-. ..|+-++|......+++.+|.|.--
T Consensus 6 KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmk------GL~L~--~lg~~~ea~~~vr~glr~d~~S~vC 77 (700)
T KOG1156|consen 6 KENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMK------GLTLN--CLGKKEEAYELVRLGLRNDLKSHVC 77 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhc------cchhh--cccchHHHHHHHHHHhccCcccchh
Confidence 334556666665556667777777777788777766643211 11101 2366778888888888888888888
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHHHHHH---HH
Q 007648 105 WIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEF---LV 181 (594)
Q Consensus 105 w~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~---~~ 181 (594)
|-.+|-+....+++++|.+.|.+|+...|+| ..+|..+..+-..++++ +.....-.+.++..|+....|+.+ ..
T Consensus 78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN--~qilrDlslLQ~QmRd~-~~~~~tr~~LLql~~~~ra~w~~~Avs~~ 154 (700)
T KOG1156|consen 78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKDN--LQILRDLSLLQIQMRDY-EGYLETRNQLLQLRPSQRASWIGFAVAQH 154 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHHHhh-hhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 8888877777788888888888888888876 67777776666677777 777777777778888776544432 44
Q ss_pred hcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccc--hhHHHHHHHHHHH
Q 007648 182 KSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTD--EVGRLWTSLADYY 259 (594)
Q Consensus 182 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~la~~~ 259 (594)
..|++..|..+.+...+.... .+ +........-++..+.--.+....+..++.....-|. +....-..-++++
T Consensus 155 L~g~y~~A~~il~ef~~t~~~-~~----s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~ 229 (700)
T KOG1156|consen 155 LLGEYKMALEILEEFEKTQNT-SP----SKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLL 229 (700)
T ss_pred HHHHHHHHHHHHHHHHHhhcc-CC----CHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHH
Confidence 457777777766665521110 00 0011111000111100000000112222222221111 0123455668999
Q ss_pred HHhccHHHHHHHHHHHHhhhccccchHHHHHHHH-HHHHHH--HHHHhc----CCCCCCcc---cccccccCCcchhhhH
Q 007648 260 IRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYS-QFEEIM--VSAKMA----KPDLSVEE---EEDDEEHGSAEDEDIR 329 (594)
Q Consensus 260 ~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~-~~e~~~--~~~~l~----~~~~~~~~---~~~~~~~~~~~~~~~~ 329 (594)
.+.++.++|..+|...+..+|++.++...+.... .+.... ...+.. ..+..... ...+.++ +. +.
T Consensus 230 ~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~-ee----l~ 304 (700)
T KOG1156|consen 230 MKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNG-EE----LK 304 (700)
T ss_pred HHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCc-ch----hH
Confidence 9999999999999999999999875322222111 111110 000111 11111000 0000000 00 00
Q ss_pred hhhhhhHHHHHHhhhccccccchhhHHHHH-HHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhcCCchhHHHHH-H
Q 007648 330 LDVNLSMAEFVKKVLNGFWLHDVKDVDLRL-ARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTY-T 407 (594)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~y-~ 407 (594)
. .+..-+ ..+++-+ .+.+.+-..+-.+|.-+...-.++.-+....+.+...+ .
T Consensus 305 ~-----------------------~vdkyL~~~l~Kg~--p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 305 E-----------------------IVDKYLRPLLSKGV--PSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred H-----------------------HHHHHHHHHhhcCC--CchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 0 000000 0000000 00000001233334433322222222210000000000 0
Q ss_pred HHHhccCCCcccCCchHHHHHH--HHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHH
Q 007648 408 EAVRTVDPMKAVGKPHTLWVAF--AKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMR 485 (594)
Q Consensus 408 ~Ai~~~~~~~~~~~~~~~~~~~--a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 485 (594)
..-+..|| ..-+|..+ ++-+...|+++.|...++.|+...|.-+ ++++..+.+....|++++|..+++
T Consensus 360 D~~~~E~P------ttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTli----Ely~~KaRI~kH~G~l~eAa~~l~ 429 (700)
T KOG1156|consen 360 DDGKQEPP------TTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLI----ELYLVKARIFKHAGLLDEAAAWLD 429 (700)
T ss_pred cccccCCc------hHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHH----HHHHHHHHHHHhcCChHHHHHHHH
Confidence 00000123 45667655 4445589999999999999999999888 999999999999999999999999
Q ss_pred HHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCch--------HHHHHH--
Q 007648 486 RATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP--------QIIINY-- 555 (594)
Q Consensus 486 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~--------~~~~~~-- 555 (594)
+|.+++-. |.-+-...+....+.+..++|.++..+--. +..++ =.|..+
T Consensus 430 ea~elD~a--------------------DR~INsKcAKYmLrAn~i~eA~~~~skFTr-~~~~~~~~L~~mqcmWf~~E~ 488 (700)
T KOG1156|consen 430 EAQELDTA--------------------DRAINSKCAKYMLRANEIEEAEEVLSKFTR-EGFGAVNNLAEMQCMWFQLED 488 (700)
T ss_pred HHHhccch--------------------hHHHHHHHHHHHHHccccHHHHHHHHHhhh-cccchhhhHHHhhhHHHhHhh
Confidence 99998763 122223667777788888888887766333 32221 145433
Q ss_pred HHHHHHhchhhhhh
Q 007648 556 ALLLEVWTLLHVFL 569 (594)
Q Consensus 556 ~~~~~~~g~~~~a~ 569 (594)
|..+.++|++..||
T Consensus 489 g~ay~r~~k~g~AL 502 (700)
T KOG1156|consen 489 GEAYLRQNKLGLAL 502 (700)
T ss_pred hHHHHHHHHHHHHH
Confidence 66778888898887
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.50 E-value=8.7e-12 Score=118.94 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccc
Q 007648 249 GRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVR 283 (594)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 283 (594)
...+..+|..+...|++++|.+.+++++...|...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 65 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDY 65 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence 56889999999999999999999999988776543
No 72
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.9e-10 Score=109.72 Aligned_cols=151 Identities=11% Similarity=0.057 Sum_probs=95.6
Q ss_pred hccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHH-HHH-HhcCCHHHHHHHHHHHHhcc
Q 007648 378 LRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFA-KLY-ETYKDIANARVIFDKAVQVN 453 (594)
Q Consensus 378 l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a-~~~-~~~~~~~~A~~~~~kal~~~ 453 (594)
....|...+.+..++.-|. |.+.+|...-..+++..+. +....--+| .+. ....--++|.+.++++|++.
T Consensus 361 q~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~------sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~ 434 (564)
T KOG1174|consen 361 QMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN------SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN 434 (564)
T ss_pred HhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc------chhhhhhhcceeeccCchhHHHHHHHHHhhhccC
Confidence 3444555555544444332 4555555555555554332 122222221 111 12223477888888888888
Q ss_pred CCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHH
Q 007648 454 YKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLES 533 (594)
Q Consensus 454 p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 533 (594)
|... ..-...+.+....|.++.+++++++.+...| |..+...++++....+.+++
T Consensus 435 P~Y~----~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~---------------------D~~LH~~Lgd~~~A~Ne~Q~ 489 (564)
T KOG1174|consen 435 PIYT----PAVNLIAELCQVEGPTKDIIKLLEKHLIIFP---------------------DVNLHNHLGDIMRAQNEPQK 489 (564)
T ss_pred CccH----HHHHHHHHHHHhhCccchHHHHHHHHHhhcc---------------------ccHHHHHHHHHHHHhhhHHH
Confidence 8776 6666677777777888888888888888877 34677888888888888888
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHH
Q 007648 534 TRAVYERILDLRIATPQIIINYALLL 559 (594)
Q Consensus 534 A~~~~~~al~~~P~~~~~~~~~~~~~ 559 (594)
|...|..|+.++|++-.+..-+-.++
T Consensus 490 am~~y~~ALr~dP~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 490 AMEYYYKALRQDPKSKRTLRGLRLLE 515 (564)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHH
Confidence 88888888888888877766555554
No 73
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.49 E-value=1.3e-11 Score=117.66 Aligned_cols=200 Identities=16% Similarity=0.076 Sum_probs=163.2
Q ss_pred CCHHHHHHHHHHH-HcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChH
Q 007648 25 FSLKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPR 103 (594)
Q Consensus 25 ~~~~~w~~~~~~~-~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~ 103 (594)
.....+...+... ..|+++.|...++++++..|.+...|...+... ...|++++|...|+++++..|.++.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~--------~~~~~~~~A~~~~~~al~~~~~~~~ 100 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYY--------QQLGELEKAEDSFRRALTLNPNNGD 100 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHhhCCCCHH
Confidence 3356777777744 489999999999999999999999988877665 4568999999999999999999999
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHH---HHHHHH
Q 007648 104 IWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIE---DFIEFL 180 (594)
Q Consensus 104 lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~---~~~~~~ 180 (594)
.+..++.++...|++++|...|++++...+.......|..++......|+. ++|...|++++...|.+.. .++.++
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~ 179 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDF-DKAEKYLTRALQIDPQRPESLLELAELY 179 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCcCChHHHHHHHHHH
Confidence 999999999999999999999999998543222356777788888888999 9999999999999999875 345678
Q ss_pred HhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 007648 181 VKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYI 260 (594)
Q Consensus 181 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~ 260 (594)
...|++++|...+++++.. .|.+ ...+...+.++.
T Consensus 180 ~~~~~~~~A~~~~~~~~~~--------------------------------------------~~~~-~~~~~~~~~~~~ 214 (234)
T TIGR02521 180 YLRGQYKDARAYLERYQQT--------------------------------------------YNQT-AESLWLGIRIAR 214 (234)
T ss_pred HHcCCHHHHHHHHHHHHHh--------------------------------------------CCCC-HHHHHHHHHHHH
Confidence 8899999999988877621 0111 345567788888
Q ss_pred HhccHHHHHHHHHHHHhh
Q 007648 261 RRELFEKARDIFEEGMMT 278 (594)
Q Consensus 261 ~~g~~~~A~~~~~~al~~ 278 (594)
..|+.+.|+...+.+...
T Consensus 215 ~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 215 ALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHhhHHHHHHHHHHHHhh
Confidence 899999999888776554
No 74
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.49 E-value=1.3e-10 Score=123.20 Aligned_cols=449 Identities=13% Similarity=0.041 Sum_probs=273.1
Q ss_pred cchHhHHHHhhCCCCHHHHHHHHHHHH-cCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHH
Q 007648 12 DDLLYEEELLRNPFSLKLWWRYLVAKR-EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNT 90 (594)
Q Consensus 12 ~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~ 90 (594)
+...|-++++.||+-..+|--+....+ ..|-.+|++.|.+|.+.+|.+++.|...++.. ....+.+.|..+
T Consensus 477 al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adty--------ae~~~we~a~~I 548 (1238)
T KOG1127|consen 477 ALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTY--------AEESTWEEAFEI 548 (1238)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHh--------hccccHHHHHHH
Confidence 445667777888888888887777654 44667888888888888888888887666544 455667777777
Q ss_pred HHHHHHhcCC--ChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhh
Q 007648 91 FERALVTMHK--MPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKY 168 (594)
Q Consensus 91 ~~~al~~~P~--~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~ 168 (594)
.-++-+..|- ...-|...+-.+.+.++...|..-|+.|++..|.+ .+.|..++..+-..|.+ ..|.++|.++..+
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD--~n~W~gLGeAY~~sGry-~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKD--YNLWLGLGEAYPESGRY-SHALKVFTKASLL 625 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchh--HHHHHHHHHHHHhcCce-ehHHHhhhhhHhc
Confidence 6666555552 23456666666777778888888888888888865 67888888888888888 8888888888888
Q ss_pred CCCCHH-HHH--HHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhcc
Q 007648 169 DPSHIE-DFI--EFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFT 245 (594)
Q Consensus 169 ~p~~~~-~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (594)
.|.+.- .|. .+....|.|.+|...+..++. ....|....
T Consensus 626 rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~-----------~~s~e~~~q--------------------------- 667 (1238)
T KOG1127|consen 626 RPLSKYGRFKEAVMECDNGKYKEALDALGLIIY-----------AFSLERTGQ--------------------------- 667 (1238)
T ss_pred CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-----------HHHHHHHhh---------------------------
Confidence 888773 232 234557788888887777662 001111000
Q ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccc-----cchHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccc
Q 007648 246 DEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTV-----RDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEH 320 (594)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~ 320 (594)
....+.++..+..+...|=..+|.+.+++.+....-. .+-...|....+--.... .++ ++. +
T Consensus 668 ~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~--q~e--~~~-v-------- 734 (1238)
T KOG1127|consen 668 NGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFS--QEE--PSI-V-------- 734 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHH--Hhc--ccc-h--------
Confidence 0012334444444444444444444454444332100 000112211111000000 000 000 0
Q ss_pred CCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc----
Q 007648 321 GSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE---- 396 (594)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~---- 396 (594)
.++...+.. ..++.+.. ..+...+..+...+-. ...+..+ +..|+.+|.-+.
T Consensus 735 -----n~h~l~il~--~q~e~~~~----l~~~d~l~Lg~~c~~~----------hlsl~~~---~~~WyNLGinylr~f~ 790 (1238)
T KOG1127|consen 735 -----NMHYLIILS--KQLEKTGA----LKKNDLLFLGYECGIA----------HLSLAIH---MYPWYNLGINYLRYFL 790 (1238)
T ss_pred -----HHHHHHHHH--HHHHhccc----CcchhHHHHHHHHhhH----------HHHHhhc---cchHHHHhHHHHHHHH
Confidence 001000000 00111000 0000000011111111 0012222 445666554331
Q ss_pred ------CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHH
Q 007648 397 ------GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEM 470 (594)
Q Consensus 397 ------~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~ 470 (594)
.+...|+.++.++|+.+.. ....|..+|.. -..|++.-|.-.|-+++..+|.+. -.|.+++.+
T Consensus 791 ~l~et~~~~~~Ai~c~KkaV~L~an------n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~----~~W~NlgvL 859 (1238)
T KOG1127|consen 791 LLGETMKDACTAIRCCKKAVSLCAN------NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCH----CQWLNLGVL 859 (1238)
T ss_pred HcCCcchhHHHHHHHHHHHHHHhhc------cHHHHHHHHHh-hccchhhhhhhhhhhhhhccccch----hheecccee
Confidence 2345789999999997543 57899999987 455899999999999999999998 899999999
Q ss_pred HHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCc--
Q 007648 471 ELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT-- 548 (594)
Q Consensus 471 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~-- 548 (594)
.+++.+++.|...|.++..++|. +..-|..-+-+-+..|+.-++..++...-.+.-..
T Consensus 860 ~l~n~d~E~A~~af~~~qSLdP~--------------------nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gk 919 (1238)
T KOG1127|consen 860 VLENQDFEHAEPAFSSVQSLDPL--------------------NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGK 919 (1238)
T ss_pred EEecccHHHhhHHHHhhhhcCch--------------------hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccc
Confidence 88999999999999999999995 45678888888888888888888888854443222
Q ss_pred -h--HHHHHHHHHHHHhchhhhhhhcccCccc
Q 007648 549 -P--QIIINYALLLEVWTLLHVFLLHVPFTFS 577 (594)
Q Consensus 549 -~--~~~~~~~~~~~~~g~~~~a~~~~~~~~~ 577 (594)
+ ..|.+-......+|+.++.+.+...+.+
T Consensus 920 a~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~s 951 (1238)
T KOG1127|consen 920 AKKFQYWLCATEIHLQNGNIEESINTARKISS 951 (1238)
T ss_pred cchhhHHHHHHHHHHhccchHHHHHHhhhhhh
Confidence 2 3555666666778888888866655443
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.49 E-value=2.8e-11 Score=119.82 Aligned_cols=90 Identities=16% Similarity=0.183 Sum_probs=77.2
Q ss_pred chhHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchH
Q 007648 81 HPEYETLNNTFERALVTMH----KMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIE 156 (594)
Q Consensus 81 ~~~~~~A~~~~~~al~~~P----~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~ 156 (594)
....+.++..+.+++...| ..+..|+..|..+...|+.+.|+..|+++++..|.+ ...|..++......|++ +
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~--~~a~~~lg~~~~~~g~~-~ 115 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM--ADAYNYLGIYLTQAGNF-D 115 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHCCCH-H
Confidence 3667888999999997544 336779999999999999999999999999999976 78899889888889998 9
Q ss_pred HHHHHHHHHHhhCCCCH
Q 007648 157 TSLRVYRRYLKYDPSHI 173 (594)
Q Consensus 157 ~a~~~~~~~l~~~p~~~ 173 (594)
.|...|+++++++|++.
T Consensus 116 ~A~~~~~~Al~l~P~~~ 132 (296)
T PRK11189 116 AAYEAFDSVLELDPTYN 132 (296)
T ss_pred HHHHHHHHHHHhCCCCH
Confidence 99999999998888864
No 76
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.49 E-value=3.6e-11 Score=116.98 Aligned_cols=433 Identities=16% Similarity=0.185 Sum_probs=270.1
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHH
Q 007648 48 IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDR 127 (594)
Q Consensus 48 ~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~r 127 (594)
-++.-++.+|.+.--|..++++. .+++.+++.+++|++..+-+|--+.+|..|+.-+...+++.....+|-|
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~--------~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~r 101 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYL--------ETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGR 101 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHH--------hhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHH
Confidence 45556788999999999999887 6779999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHcCCchH-HHHHHHHHHHhhCCCCHHHHHHHHHhcccHHHHHHHHHHhhcCccccccc
Q 007648 128 ALCALPVTQHDRIWEIYLRFVEQEGIPIE-TSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIK 206 (594)
Q Consensus 128 al~~~p~~~~~~~w~~~~~~~~~~~~~~~-~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 206 (594)
+|.-.-. .++|..|+.+..+.++.++ +++...- +.|+-.++-- ..
T Consensus 102 CL~k~l~---ldLW~lYl~YIRr~n~~~tGq~r~~i~---------------------------~ayefv~~~~----~~ 147 (660)
T COG5107 102 CLKKSLN---LDLWMLYLEYIRRVNNLITGQKRFKIY---------------------------EAYEFVLGCA----IF 147 (660)
T ss_pred HHhhhcc---HhHHHHHHHHHHhhCcccccchhhhhH---------------------------HHHHHHHhcc----cc
Confidence 9985432 7899999999887665411 1111111 1111111100 00
Q ss_pred ccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchH
Q 007648 207 GKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFS 286 (594)
Q Consensus 207 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 286 (594)
...+...|.+|..|++.-+. ++.+. ++.+.+..|..|+++|...-++ +.
T Consensus 148 e~~s~~~W~ey~~fle~~~~----------------------------~~kwE-eQqrid~iR~~Y~ral~tP~~n--le 196 (660)
T COG5107 148 EPQSENYWDEYGLFLEYIEE----------------------------LGKWE-EQQRIDKIRNGYMRALQTPMGN--LE 196 (660)
T ss_pred cccccchHHHHHHHHHhccc----------------------------cccHH-HHHHHHHHHHHHHHHHcCcccc--HH
Confidence 11123578888887764332 22233 4667788888888888764333 34
Q ss_pred HHHHHHHHHHHHHHHHH-hcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHh--------------------hhc
Q 007648 287 VIFDSYSQFEEIMVSAK-MAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKK--------------------VLN 345 (594)
Q Consensus 287 ~l~~~~~~~e~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~ 345 (594)
++|..|..||....... -+-.+..++ ++.+-++.+..+.+- ...
T Consensus 197 klW~dy~~fE~e~N~~TarKfvge~sp---------------~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~ 261 (660)
T COG5107 197 KLWKDYENFELELNKITARKFVGETSP---------------IYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSD 261 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCH---------------HHHHHHHHHHHHHHHhccccccCchhhhhhcccccccc
Confidence 78888888886543221 111111111 111111111111110 000
Q ss_pred cc---cccch---------hhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHh
Q 007648 346 GF---WLHDV---------KDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVR 411 (594)
Q Consensus 346 ~~---~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~ 411 (594)
.. |+... .....++. ++-+.++.-.|-.++.|+-+...+. ++-++|+.+-++|+.
T Consensus 262 S~WlNwIkwE~en~l~L~~~~~~qRi~-----------y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~ 330 (660)
T COG5107 262 SNWLNWIKWEMENGLKLGGRPHEQRIH-----------YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIE 330 (660)
T ss_pred chhhhHhhHhhcCCcccCCCcHHHHHH-----------HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc
Confidence 01 11110 01112221 1222256667788889988877765 467778888888876
Q ss_pred ccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---------------cCCCh----hh-------HHHHHH
Q 007648 412 TVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQV---------------NYKTV----DH-------LASIWC 465 (594)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~---------------~p~~~----~~-------~~~~~~ 465 (594)
.+| .+.+.++.+++...+-+..+.+|+++++. ...|+ +. +.-+|+
T Consensus 331 ~sp---------sL~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C 401 (660)
T COG5107 331 MSP---------SLTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFC 401 (660)
T ss_pred CCC---------chheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHH
Confidence 532 35566777777777777777777666531 01111 11 233555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcCCc--hhH---hhhhhcc--CChhhhHH--------hhccHhhHHHHHHHHHHhCC
Q 007648 466 EWAEMELRHKNFKGALELMRRATAEPS--VEV---RRRVAAD--GNEPVQMK--------LHKSLRLWTFYVDLEESLGN 530 (594)
Q Consensus 466 ~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~---~~~~~~~--~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~ 530 (594)
-+...-.+..+++.||++|-++-+..- .+. -.++++. ++....-+ ..+++.+-..|.+++.+.|+
T Consensus 402 ~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ind 481 (660)
T COG5107 402 VHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRIND 481 (660)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCc
Confidence 566665677778888888888876541 111 1233311 22211111 22567778899999999999
Q ss_pred hHHHHHHHHHHHhccCCc--hHHHHHHHHHHHHhchhhhhh-------hcccCcccchhhhhhhheee
Q 007648 531 LESTRAVYERILDLRIAT--PQIIINYALLLEVWTLLHVFL-------LHVPFTFSGLCMFTFFFTVS 589 (594)
Q Consensus 531 ~~~A~~~~~~al~~~P~~--~~~~~~~~~~~~~~g~~~~a~-------~~~~~~~~~~~~~~~~~~~~ 589 (594)
-+.|+.+|++++..--++ ..+|..+...+..-|+.+.+. +.+|.. +-++.||+++.++
T Consensus 482 e~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe-n~~evF~Sry~ik 548 (660)
T COG5107 482 EENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE-NLIEVFTSRYAIK 548 (660)
T ss_pred HHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH-hHHHHHHHHHhhh
Confidence 999999999998864444 578999999999999999987 556654 3567788777654
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1e-10 Score=112.73 Aligned_cols=347 Identities=12% Similarity=0.051 Sum_probs=216.7
Q ss_pred chHhHHHHhhCCCCHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHH
Q 007648 13 DLLYEEELLRNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFE 92 (594)
Q Consensus 13 ~~~~e~~l~~~P~~~~~w~~~~~~~~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 92 (594)
+..+=..++.-|--...-...++.-.+|.. .-..-..++...|....+|...-.+.+ .|....-+..+..++-
T Consensus 150 vl~ykevvrecp~aL~~i~~ll~l~v~g~e--~~S~~m~~~~~~~~~dwls~wika~Aq-----~~~~~hs~a~~t~l~l 222 (564)
T KOG1174|consen 150 VLAYKEVIRECPMALQVIEALLELGVNGNE--INSLVMHAATVPDHFDWLSKWIKALAQ-----MFNFKHSDASQTFLML 222 (564)
T ss_pred HHhhhHHHHhcchHHHHHHHHHHHhhcchh--hhhhhhhheecCCCccHHHHHHHHHHH-----HHhcccchhhhHHHHH
Confidence 444444555555554444444443323322 223444556667766666653211111 1233334556666777
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCC
Q 007648 93 RALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSH 172 (594)
Q Consensus 93 ~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~ 172 (594)
.-....|+++.+....+.++...|+.++|...|+++...+|.. ...-..|+-+....|+. ++...+-.+.+.+....
T Consensus 223 e~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~--i~~MD~Ya~LL~~eg~~-e~~~~L~~~Lf~~~~~t 299 (564)
T KOG1174|consen 223 HDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDN--VEAMDLYAVLLGQEGGC-EQDSALMDYLFAKVKYT 299 (564)
T ss_pred HhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhh--hhhHHHHHHHHHhccCH-hhHHHHHHHHHhhhhcc
Confidence 7777788888888888888888888888888898888888875 45556677777777777 77777766666665443
Q ss_pred HHHH---HHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhH
Q 007648 173 IEDF---IEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVG 249 (594)
Q Consensus 173 ~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 249 (594)
...+ +..+...+++..|..+-++.|+-+ |+ + .
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~------------------------~r--------------------~-~ 334 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSE------------------------PR--------------------N-H 334 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhccC------------------------cc--------------------c-c
Confidence 3322 345556678888888888888411 11 0 2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccc-hHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhh
Q 007648 250 RLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRD-FSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDI 328 (594)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 328 (594)
+.++..|.++...|+.++|.-.|+.|....|..-+ +..++..|+.+.+...
T Consensus 335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE---------------------------- 386 (564)
T KOG1174|consen 335 EALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE---------------------------- 386 (564)
T ss_pred hHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH----------------------------
Confidence 45677778888888888888888888888776532 3344444444332210
Q ss_pred HhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHH-hc---CCchhHHH
Q 007648 329 RLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKI-FE---GNPTKQIL 404 (594)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~-~~---~~~~~a~~ 404 (594)
++..-.. +.+..|+++++....|.. .. .--++|..
T Consensus 387 -----------------------------A~~~An~------------~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 387 -----------------------------ANALANW------------TIRLFQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred -----------------------------HHHHHHH------------HHHHhhcchhhhhhhcceeeccCchhHHHHHH
Confidence 0000001 123334455544444321 11 12466778
Q ss_pred HHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHH
Q 007648 405 TYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELM 484 (594)
Q Consensus 405 ~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 484 (594)
.|++++.. .|. +..+-..+|.+....|.++.++++++++|...|++ .+...+|++....+.+.+|...|
T Consensus 426 f~ek~L~~-~P~-----Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-----~LH~~Lgd~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 426 FAEKSLKI-NPI-----YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-----NLHNHLGDIMRAQNEPQKAMEYY 494 (564)
T ss_pred HHHhhhcc-CCc-----cHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-----HHHHHHHHHHHHhhhHHHHHHHH
Confidence 88888775 332 66777777777777788888888888888777777 57777888777777788888888
Q ss_pred HHHhcCCchh
Q 007648 485 RRATAEPSVE 494 (594)
Q Consensus 485 ~~al~~~p~~ 494 (594)
..|+.++|.+
T Consensus 495 ~~ALr~dP~~ 504 (564)
T KOG1174|consen 495 YKALRQDPKS 504 (564)
T ss_pred HHHHhcCccc
Confidence 8888888864
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.48 E-value=1.7e-12 Score=116.25 Aligned_cols=153 Identities=14% Similarity=0.110 Sum_probs=130.7
Q ss_pred HHHhcCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 007648 392 VKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEME 471 (594)
Q Consensus 392 ~~~~~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~ 471 (594)
+.+..|++..|+..+++|+++ +|. +...|..+|.++...|+.+.|.+.|++|++++|++. ++..+||-|+
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~-DPs-----~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G----dVLNNYG~FL 113 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEH-DPS-----YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG----DVLNNYGAFL 113 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-Ccc-----cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc----chhhhhhHHH
Confidence 334458999999999999996 553 678999999999999999999999999999999999 8888999999
Q ss_pred HhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHH
Q 007648 472 LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI 551 (594)
Q Consensus 472 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 551 (594)
..+|.+++|...|++|+...-- ..-+..|...+-.-.+.|+++.|+..|+|+++.+|+.|.+
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y------------------~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~ 175 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAY------------------GEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPA 175 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCC------------------CCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChH
Confidence 9999999999999999987320 0123556666666668999999999999999999999999
Q ss_pred HHHHHHHHHHhchhhhhhhcc
Q 007648 552 IINYALLLEVWTLLHVFLLHV 572 (594)
Q Consensus 552 ~~~~~~~~~~~g~~~~a~~~~ 572 (594)
...+++.+.+.|++-.|...+
T Consensus 176 ~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 176 LLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred HHHHHHHHHhcccchHHHHHH
Confidence 999999999999999886433
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.47 E-value=2.2e-09 Score=109.54 Aligned_cols=414 Identities=15% Similarity=0.097 Sum_probs=254.8
Q ss_pred chHhHHHHhhCCCCHHHHHHHHHHH-HcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHH
Q 007648 13 DLLYEEELLRNPFSLKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTF 91 (594)
Q Consensus 13 ~~~~e~~l~~~P~~~~~w~~~~~~~-~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 91 (594)
.+..+..|.+.|..-+.--.-+-.. .-|+-++|......++..+|.|.--|+.+.-.. .+..+|++|++.|
T Consensus 27 LK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~--------R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 27 LKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ--------RSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH--------hhhhhHHHHHHHH
Confidence 3445556666665554433222211 148889999999999999999999999887655 4568999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhC--
Q 007648 92 ERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYD-- 169 (594)
Q Consensus 92 ~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~-- 169 (594)
..|++..|++..+|.+++-.-.+.++++.....-.+.++..|.. ...|..++.-.-..|++ ..|..+.+...+..
T Consensus 99 ~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~--ra~w~~~Avs~~L~g~y-~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 99 RNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ--RASWIGFAVAQHLLGEY-KMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999985 78899888776667777 88888777666554
Q ss_pred -CCCHH-H------H-HHHHHhcccHHHHHHHHHHhhcCccccccc--ccchHHHHHHHHHHHhhcccccccCcHHHHHH
Q 007648 170 -PSHIE-D------F-IEFLVKSKLWQEAAERLASVLNDDQFYSIK--GKTKHRLWLELCDLLTTHATEISGLNVDAIIR 238 (594)
Q Consensus 170 -p~~~~-~------~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 238 (594)
|+... . | .......|.+++|.+.+...-. ..+... ......+...+.++ .++..+++
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~--~i~Dkla~~e~ka~l~~kl~~l----------EeA~~~y~ 243 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK--QIVDKLAFEETKADLLMKLGQL----------EEAVKVYR 243 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh--HHHHHHHHhhhHHHHHHHHhhH----------HhHHHHHH
Confidence 44331 1 1 1345567778888776654321 111000 00011122222222 13456778
Q ss_pred HHHhhccchhHHHHHHHHHHHHHhccHHHHH-HHHHHHHhhhccccchHHHHHHHHHHHHH--HHHHHhc-CCCCCCccc
Q 007648 239 GGIRKFTDEVGRLWTSLADYYIRRELFEKAR-DIFEEGMMTVVTVRDFSVIFDSYSQFEEI--MVSAKMA-KPDLSVEEE 314 (594)
Q Consensus 239 ~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~l~~~~~~~e~~--~~~~~l~-~~~~~~~~~ 314 (594)
..+..+|++. .-+..+-..+..-.+..++. .+|...-...|...-...+-...++.++- .++..+. .+.+.-
T Consensus 244 ~Ll~rnPdn~-~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~--- 319 (700)
T KOG1156|consen 244 RLLERNPDNL-DYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV--- 319 (700)
T ss_pred HHHhhCchhH-HHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC---
Confidence 8888889873 33444433332222333344 55555544444332111111111211111 1111111 011100
Q ss_pred ccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhh-------hccCCCChHH
Q 007648 315 EDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVL-------LRQNPHNVEQ 387 (594)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------l~~~p~~~~~ 387 (594)
+.+++.+...+.. . ......++++..+...+.+.. -+..|.-.-+
T Consensus 320 -----------p~vf~dl~SLyk~-------------p----~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pttll 371 (700)
T KOG1156|consen 320 -----------PSVFKDLRSLYKD-------------P----EKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLL 371 (700)
T ss_pred -----------CchhhhhHHHHhc-------------h----hHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHH
Confidence 0011111110000 0 001123333222221111110 1123556667
Q ss_pred HHHHHHHh----cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHH
Q 007648 388 WHRRVKIF----EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASI 463 (594)
Q Consensus 388 ~~~~~~~~----~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~ 463 (594)
|..+.... .|+++.|....+.||.++|. .+++++--|.++...|+++.|-..+++|-+.+--+. .+
T Consensus 372 Wt~y~laqh~D~~g~~~~A~~yId~AIdHTPT------liEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR----~I 441 (700)
T KOG1156|consen 372 WTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT------LIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR----AI 441 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhccCch------HHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH----HH
Confidence 87654443 28999999999999998765 789999999999999999999999999999876665 55
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 007648 464 WCEWAEMELRHKNFKGALELMRRATAEP 491 (594)
Q Consensus 464 ~~~~~~~~~~~~~~~~A~~~~~~al~~~ 491 (594)
--..+...++....++|.++.-+-.+..
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 5578888899999999999887766554
No 80
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.46 E-value=1.7e-10 Score=108.65 Aligned_cols=102 Identities=8% Similarity=-0.031 Sum_probs=81.7
Q ss_pred hcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhcc
Q 007648 435 TYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKS 514 (594)
Q Consensus 435 ~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 514 (594)
+.+++.++....++.++.+|+.+..-.......-.+....+++.+|+..-.+++..+|+ |
T Consensus 281 e~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~--------------------d 340 (504)
T KOG0624|consen 281 EEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD--------------------D 340 (504)
T ss_pred hhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch--------------------H
Confidence 57889999999999999999965321123333344455678999999999999999996 5
Q ss_pred HhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHH
Q 007648 515 LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556 (594)
Q Consensus 515 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~ 556 (594)
..++...++.+..-..+|.|+.-|++|.+.+|++..+..-+-
T Consensus 341 v~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle 382 (504)
T KOG0624|consen 341 VQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLE 382 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 577778888888888999999999999999999988776443
No 81
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.45 E-value=3.1e-12 Score=111.96 Aligned_cols=128 Identities=11% Similarity=-0.057 Sum_probs=116.1
Q ss_pred HHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHH
Q 007648 403 ILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALE 482 (594)
Q Consensus 403 ~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 482 (594)
...|++|+.. +| ..+..+|......|++++|...|++++..+|.++ .+|+.+|.+....|++++|..
T Consensus 13 ~~~~~~al~~-~p--------~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~lg~~~~~~g~~~~A~~ 79 (144)
T PRK15359 13 EDILKQLLSV-DP--------ETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSW----RAHIALAGTWMMLKEYTTAIN 79 (144)
T ss_pred HHHHHHHHHc-CH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHHhhHHHHHH
Confidence 3688899985 44 3366788889999999999999999999999999 999999999999999999999
Q ss_pred HHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHh
Q 007648 483 LMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVW 562 (594)
Q Consensus 483 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~ 562 (594)
.|+++++.+|+ ++..|..++..+...|++++|+..|+++++..|+++..|.+.+.+....
T Consensus 80 ~y~~Al~l~p~--------------------~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 80 FYGHALMLDAS--------------------HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHhcCCC--------------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999995 6789999999999999999999999999999999999999998887644
Q ss_pred c
Q 007648 563 T 563 (594)
Q Consensus 563 g 563 (594)
+
T Consensus 140 ~ 140 (144)
T PRK15359 140 D 140 (144)
T ss_pred H
Confidence 3
No 82
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=2.1e-11 Score=122.64 Aligned_cols=140 Identities=12% Similarity=0.137 Sum_probs=112.1
Q ss_pred hccCC--CChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 007648 378 LRQNP--HNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVN 453 (594)
Q Consensus 378 l~~~p--~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~ 453 (594)
...+| .++++...+|.++. +++++|+.+|+.|+.. .|. ...+|..||-..-...+..+|+..|.||+++.
T Consensus 421 a~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v-~Pn-----d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq 494 (579)
T KOG1125|consen 421 ARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV-KPN-----DYLLWNRLGATLANGNRSEEAISAYNRALQLQ 494 (579)
T ss_pred HHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc-CCc-----hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC
Confidence 55667 68888889988885 8999999999999985 554 56899999999988888999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHH
Q 007648 454 YKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLES 533 (594)
Q Consensus 454 p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 533 (594)
|... .+++.+|...+..|.|++|.+.|-.||...+..- -.... ...+..+|..+-.+....++.|-
T Consensus 495 P~yV----R~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~---~~~~~-------~~~se~iw~tLR~als~~~~~D~ 560 (579)
T KOG1125|consen 495 PGYV----RVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSR---NHNKA-------PMASENIWQTLRLALSAMNRSDL 560 (579)
T ss_pred CCee----eeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccc---ccccC-------CcchHHHHHHHHHHHHHcCCchH
Confidence 9999 9999999999999999999999999999877310 00000 00145788888777777787775
Q ss_pred HHHH
Q 007648 534 TRAV 537 (594)
Q Consensus 534 A~~~ 537 (594)
+..+
T Consensus 561 l~~a 564 (579)
T KOG1125|consen 561 LQEA 564 (579)
T ss_pred HHHh
Confidence 4443
No 83
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.43 E-value=1.4e-12 Score=127.46 Aligned_cols=138 Identities=25% Similarity=0.452 Sum_probs=118.6
Q ss_pred HHHHHHHHHHH-cCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHH
Q 007648 28 KLWWRYLVAKR-EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWI 106 (594)
Q Consensus 28 ~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~ 106 (594)
-.|+.|+++.+ .+..+.||.+|++|++..+....+|..++.+|... .++.+.|..+|+++++..|.++.+|.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-------~~d~~~A~~Ife~glk~f~~~~~~~~ 74 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC-------NKDPKRARKIFERGLKKFPSDPDFWL 74 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-------CS-HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 47999999886 56699999999999977677899999999988432 36677899999999999999999999
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCH
Q 007648 107 MYLETLTSQKFITKARRTFDRALCALPVTQ-HDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHI 173 (594)
Q Consensus 107 ~y~~~~~~~~~~~~A~~~~~ral~~~p~~~-~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~ 173 (594)
.|+.++++.|+.+.||.+|+|++...|... ...+|..++.|+...|+. +.+.++++++.+..|+..
T Consensus 75 ~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl-~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 75 EYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDL-ESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-H-HHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999988754 457999999999999998 999999999999988854
No 84
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=3.9e-09 Score=102.96 Aligned_cols=406 Identities=14% Similarity=0.093 Sum_probs=250.4
Q ss_pred CChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHH
Q 007648 40 APFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFIT 119 (594)
Q Consensus 40 ~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~ 119 (594)
.++.+|.+.|+-||.+.|.-..-. .+... ..+....++.|.|+.|+..|+.+++..|+-. .-+.+.-+....|+-+
T Consensus 251 r~fskaikfyrmaldqvpsink~~--rikil-~nigvtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~f~i~d~e 326 (840)
T KOG2003|consen 251 REFSKAIKFYRMALDQVPSINKDM--RIKIL-NNIGVTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLIICAFAIGDAE 326 (840)
T ss_pred hhHHHHHHHHHHHHhhccccchhh--HHHHH-hhcCeeEEecccchhhHhhHHHHHHhCccHH-hhhhhhhhheecCcHH
Confidence 456799999999999999532211 11111 1122233678999999999999999999853 3445666777789999
Q ss_pred HHHHHHHHHHHhCCCCC------------HHHHHHH------HHHHHHHcCCchHHHHHHHHHHHhh-----CCCCH---
Q 007648 120 KARRTFDRALCALPVTQ------------HDRIWEI------YLRFVEQEGIPIETSLRVYRRYLKY-----DPSHI--- 173 (594)
Q Consensus 120 ~A~~~~~ral~~~p~~~------------~~~~w~~------~~~~~~~~~~~~~~a~~~~~~~l~~-----~p~~~--- 173 (594)
+.++.|.+.+. .|... +..+... +-.++.. +. ..|.+..-.+.++ .|+..
T Consensus 327 kmkeaf~kli~-ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~--~k-a~aek~i~ta~kiiapvi~~~fa~g~ 402 (840)
T KOG2003|consen 327 KMKEAFQKLID-IPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKE--NK-ADAEKAIITAAKIIAPVIAPDFAAGC 402 (840)
T ss_pred HHHHHHHHHhc-CCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHh--hh-hhHHHHHHHHHHHhccccccchhccc
Confidence 99999999987 34321 1122111 1223221 11 3445444444433 23321
Q ss_pred ----H-----HH-----------HHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcH
Q 007648 174 ----E-----DF-----------IEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNV 233 (594)
Q Consensus 174 ----~-----~~-----------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 233 (594)
+ .+ +..+.+.|+++.|+++++-.-..+... .+....-...++|+.--.+- .++
T Consensus 403 dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~----~saaa~nl~~l~flqggk~~---~~a 475 (840)
T KOG2003|consen 403 DWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKT----ASAAANNLCALRFLQGGKDF---ADA 475 (840)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchh----hHHHhhhhHHHHHHhcccch---hHH
Confidence 0 01 124667889999998876554211110 01111222233333211110 011
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 007648 234 DAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEE 313 (594)
Q Consensus 234 ~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~ 313 (594)
.+.-..++....-+ +.+..+-|..-..+|++++|...|+++|..+.+-.+ .+|+.-+..+..
T Consensus 476 qqyad~aln~dryn-~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e--alfniglt~e~~--------------- 537 (840)
T KOG2003|consen 476 QQYADIALNIDRYN-AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE--ALFNIGLTAEAL--------------- 537 (840)
T ss_pred HHHHHHHhcccccC-HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH--HHHHhcccHHHh---------------
Confidence 11212222211101 334555566666789999999999999987544332 455544333321
Q ss_pred cccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHH
Q 007648 314 EEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVK 393 (594)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~ 393 (594)
+.++.++.-|-++ ...--++++...+++.
T Consensus 538 ---------------------------------------~~ldeald~f~kl------------h~il~nn~evl~qian 566 (840)
T KOG2003|consen 538 ---------------------------------------GNLDEALDCFLKL------------HAILLNNAEVLVQIAN 566 (840)
T ss_pred ---------------------------------------cCHHHHHHHHHHH------------HHHHHhhHHHHHHHHH
Confidence 0111222222221 1111277888889988
Q ss_pred Hhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 007648 394 IFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEME 471 (594)
Q Consensus 394 ~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~ 471 (594)
+++ .++.+|++.|-++...+|. .+.+.-.+|.+|.+.|+-..|.+++=...+..|.+. +.---++.++
T Consensus 567 iye~led~aqaie~~~q~~slip~------dp~ilskl~dlydqegdksqafq~~ydsyryfp~ni----e~iewl~ayy 636 (840)
T KOG2003|consen 567 IYELLEDPAQAIELLMQANSLIPN------DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNI----ETIEWLAAYY 636 (840)
T ss_pred HHHHhhCHHHHHHHHHHhcccCCC------CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcch----HHHHHHHHHH
Confidence 886 7899999999999987665 577888999999999999999999999999999998 4433345555
Q ss_pred HhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhH-HHHHHHHHHhCChHHHHHHHHHHHhccCCchH
Q 007648 472 LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLW-TFYVDLEESLGNLESTRAVYERILDLRIATPQ 550 (594)
Q Consensus 472 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~ 550 (594)
+...-.++|+..|++|.-..|+ ..-| ++-+....+-|++++|...|...-..+|.+.+
T Consensus 637 idtqf~ekai~y~ekaaliqp~---------------------~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedld 695 (840)
T KOG2003|consen 637 IDTQFSEKAINYFEKAALIQPN---------------------QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLD 695 (840)
T ss_pred HhhHHHHHHHHHHHHHHhcCcc---------------------HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchH
Confidence 6666678999999999999895 1234 45566778899999999999999999999987
Q ss_pred HHHHHHHHHH
Q 007648 551 IIINYALLLE 560 (594)
Q Consensus 551 ~~~~~~~~~~ 560 (594)
-+--+.++-.
T Consensus 696 clkflvri~~ 705 (840)
T KOG2003|consen 696 CLKFLVRIAG 705 (840)
T ss_pred HHHHHHHHhc
Confidence 6655555433
No 85
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=1.7e-09 Score=101.52 Aligned_cols=86 Identities=12% Similarity=0.089 Sum_probs=45.6
Q ss_pred CchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCCh
Q 007648 398 NPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNF 477 (594)
Q Consensus 398 ~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~ 477 (594)
+.++|+..+++|++. +|+ .+.+-+.+|+++...|+++.|+..++++++.+|+-. ..+.-.+..++.+.|+.
T Consensus 195 ~~d~A~~~l~kAlqa-~~~-----cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl---~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 195 DVDRARELLKKALQA-DKK-----CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL---SEVLEMLYECYAQLGKP 265 (389)
T ss_pred hHHHHHHHHHHHHhh-Ccc-----ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH---HHHHHHHHHHHHHhCCH
Confidence 445555555555553 332 344555555555556666666666666665555442 12333444444455566
Q ss_pred HHHHHHHHHHhcCCc
Q 007648 478 KGALELMRRATAEPS 492 (594)
Q Consensus 478 ~~A~~~~~~al~~~p 492 (594)
++.+..+.++.+..+
T Consensus 266 ~~~~~fL~~~~~~~~ 280 (389)
T COG2956 266 AEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHHHHHHHHccC
Confidence 666666666655555
No 86
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=4.1e-10 Score=105.58 Aligned_cols=195 Identities=16% Similarity=0.190 Sum_probs=138.2
Q ss_pred CCchHHHHHHHHHHHhhCCCCHH---HHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhccccc
Q 007648 152 GIPIETSLRVYRRYLKYDPSHIE---DFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEI 228 (594)
Q Consensus 152 ~~~~~~a~~~~~~~l~~~p~~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 228 (594)
+++ ++|++.|-..++.+|+..+ .+.+++.+.|..|+|+.+=+.+++.|+...
T Consensus 49 ~Q~-dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~------------------------ 103 (389)
T COG2956 49 NQP-DKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTF------------------------ 103 (389)
T ss_pred cCc-chHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCch------------------------
Confidence 566 8999999999999998876 567889999999999998877776554320
Q ss_pred ccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCC
Q 007648 229 SGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPD 308 (594)
Q Consensus 229 ~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~ 308 (594)
++ ..-+...+|+=|+..|-+|.|..+|....+.. .... ......
T Consensus 104 -----~q------------r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~--~AlqqL---------------- 147 (389)
T COG2956 104 -----EQ------------RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAE--GALQQL---------------- 147 (389)
T ss_pred -----HH------------HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhH--HHHHHH----------------
Confidence 00 02356778888999999999999998876431 1000 000000
Q ss_pred CCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHH
Q 007648 309 LSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQW 388 (594)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 388 (594)
+.+|+.
T Consensus 148 --------------------------------------------------l~IYQ~------------------------ 153 (389)
T COG2956 148 --------------------------------------------------LNIYQA------------------------ 153 (389)
T ss_pred --------------------------------------------------HHHHHH------------------------
Confidence 001111
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHH
Q 007648 389 HRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWA 468 (594)
Q Consensus 389 ~~~~~~~~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~ 468 (594)
..+.++|+.+-++-++. .++...-..+.+++.+|+-+....+.++|+..++||++.+|++. .+-+.+|
T Consensus 154 -------treW~KAId~A~~L~k~-~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cv----RAsi~lG 221 (389)
T COG2956 154 -------TREWEKAIDVAERLVKL-GGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCV----RASIILG 221 (389)
T ss_pred -------hhHHHHHHHHHHHHHHc-CCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccce----ehhhhhh
Confidence 01223334444433332 22211111467788888888888999999999999999999999 8999999
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCch
Q 007648 469 EMELRHKNFKGALELMRRATAEPSV 493 (594)
Q Consensus 469 ~~~~~~~~~~~A~~~~~~al~~~p~ 493 (594)
++++..|+++.|.+.++++++.+|+
T Consensus 222 ~v~~~~g~y~~AV~~~e~v~eQn~~ 246 (389)
T COG2956 222 RVELAKGDYQKAVEALERVLEQNPE 246 (389)
T ss_pred HHHHhccchHHHHHHHHHHHHhChH
Confidence 9999999999999999999999996
No 87
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.35 E-value=1.6e-11 Score=120.07 Aligned_cols=140 Identities=21% Similarity=0.363 Sum_probs=114.3
Q ss_pred HHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHh-cCCHHHHHHHHHHHHhccCCChhhHHHH
Q 007648 387 QWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYET-YKDIANARVIFDKAVQVNYKTVDHLASI 463 (594)
Q Consensus 387 ~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~kal~~~p~~~~~~~~~ 463 (594)
+|..++++.. +..+.||.+|++|.+. ++ ....+|+.+|.++.. .++.+.|+.||+++++..|.++ .+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~-~~-----~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~----~~ 72 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD-KR-----CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP----DF 72 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC-CC-----S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H----HH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC-CC-----CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH----HH
Confidence 4666666664 4588999999999853 22 146899999999887 6777789999999999999999 99
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHh
Q 007648 464 WCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543 (594)
Q Consensus 464 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 543 (594)
|..|++++...++.+.||.+|++++...|.+. ....+|..|+++|.+.|+.+.++++++|+.+
T Consensus 73 ~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~-----------------~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 73 WLEYLDFLIKLNDINNARALFERAISSLPKEK-----------------QSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHH-----------------HCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcCchh-----------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999877410 1347999999999999999999999999999
Q ss_pred ccCCchHHHH
Q 007648 544 LRIATPQIII 553 (594)
Q Consensus 544 ~~P~~~~~~~ 553 (594)
..|++..+..
T Consensus 136 ~~~~~~~~~~ 145 (280)
T PF05843_consen 136 LFPEDNSLEL 145 (280)
T ss_dssp HTTTS-HHHH
T ss_pred HhhhhhHHHH
Confidence 9999665443
No 88
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=6e-11 Score=111.01 Aligned_cols=224 Identities=15% Similarity=0.174 Sum_probs=139.7
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 007648 233 VDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVE 312 (594)
Q Consensus 233 ~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~ 312 (594)
+++-+++.++.+|. ++.+.-++..|.+.++...|..+|.++++..|.+.. +......+.+..
T Consensus 242 AekqlqssL~q~~~--~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT---~l~g~ARi~eam------------- 303 (478)
T KOG1129|consen 242 AEKQLQSSLTQFPH--PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT---YLLGQARIHEAM------------- 303 (478)
T ss_pred hHHHHHHHhhcCCc--hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh---hhhhhHHHHHHH-------------
Confidence 45566666666664 466777777777777777777777777777776543 111111111110
Q ss_pred ccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHH-
Q 007648 313 EEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRR- 391 (594)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~- 391 (594)
+..+.+...|+. +++.+|.|+++.-..
T Consensus 304 ----------------------------------------~~~~~a~~lYk~------------vlk~~~~nvEaiAcia 331 (478)
T KOG1129|consen 304 ----------------------------------------EQQEDALQLYKL------------VLKLHPINVEAIACIA 331 (478)
T ss_pred ----------------------------------------HhHHHHHHHHHH------------HHhcCCccceeeeeee
Confidence 001112334444 467777777665433
Q ss_pred -HHHhcCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--CCChhhHHHHHHHHH
Q 007648 392 -VKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVN--YKTVDHLASIWCEWA 468 (594)
Q Consensus 392 -~~~~~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~--p~~~~~~~~~~~~~~ 468 (594)
+.++.++++-|+..|.+-++.-- .+++++.++|.+..--+++|-+...|+||+... |+. -.++|+.++
T Consensus 332 ~~yfY~~~PE~AlryYRRiLqmG~------~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~---aaDvWYNlg 402 (478)
T KOG1129|consen 332 VGYFYDNNPEMALRYYRRILQMGA------QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQ---AADVWYNLG 402 (478)
T ss_pred eccccCCChHHHHHHHHHHHHhcC------CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcch---hhhhhhccc
Confidence 33445677777777777665311 146777777777666777777777777777642 322 236777777
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCc
Q 007648 469 EMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT 548 (594)
Q Consensus 469 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~ 548 (594)
.+..-.|++.-|...|+-++..+|+ +...++.++-+..+.|+.++|+.++..|-.+.|+.
T Consensus 403 ~vaV~iGD~nlA~rcfrlaL~~d~~--------------------h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 403 FVAVTIGDFNLAKRCFRLALTSDAQ--------------------HGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred eeEEeccchHHHHHHHHHHhccCcc--------------------hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 7766677777777777777777774 44566777777777777777777777777777776
Q ss_pred hHHHHHH
Q 007648 549 PQIIINY 555 (594)
Q Consensus 549 ~~~~~~~ 555 (594)
.+.-.|+
T Consensus 463 ~E~~~Nl 469 (478)
T KOG1129|consen 463 AEVTTNL 469 (478)
T ss_pred cccccce
Confidence 5554443
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.31 E-value=6.5e-11 Score=113.67 Aligned_cols=182 Identities=11% Similarity=0.034 Sum_probs=140.5
Q ss_pred CCCChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChh
Q 007648 381 NPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVD 458 (594)
Q Consensus 381 ~p~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~ 458 (594)
++..++.++.+|..+ .|++++|...|++++...|. +. ....+|+.+|.++...|+++.|+..|+++++..|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-~~--~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 105 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPF-SP--YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD 105 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ch--hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 455677888888765 38999999999999986433 21 13578999999999999999999999999999999883
Q ss_pred hHHHHHHHHHHHHHhc--------CChHHHHHHHHHHhcCCchhH--h---hhhh-ccCChhhhHHhhccHhhHHHHHHH
Q 007648 459 HLASIWCEWAEMELRH--------KNFKGALELMRRATAEPSVEV--R---RRVA-ADGNEPVQMKLHKSLRLWTFYVDL 524 (594)
Q Consensus 459 ~~~~~~~~~~~~~~~~--------~~~~~A~~~~~~al~~~p~~~--~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 524 (594)
.- ..++..|.+..+. |++++|.+.|++++...|++. . ..+. ... .........+++
T Consensus 106 ~~-~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~---------~~~~~~~~~a~~ 175 (235)
T TIGR03302 106 AD-YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN---------RLAGKELYVARF 175 (235)
T ss_pred hH-HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH---------HHHHHHHHHHHH
Confidence 21 2567777766554 789999999999999999632 0 0000 000 011223466788
Q ss_pred HHHhCChHHHHHHHHHHHhccCCch---HHHHHHHHHHHHhchhhhhhhcccCc
Q 007648 525 EESLGNLESTRAVYERILDLRIATP---QIIINYALLLEVWTLLHVFLLHVPFT 575 (594)
Q Consensus 525 ~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~~~~~~~~~g~~~~a~~~~~~~ 575 (594)
+.+.|++++|...|++++...|++| .+|..++.++...|++++|..++.++
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8899999999999999999987764 79999999999999999999776554
No 90
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.31 E-value=3.4e-09 Score=112.64 Aligned_cols=462 Identities=11% Similarity=0.043 Sum_probs=273.0
Q ss_pred cchHhHHHHhhCCCCHHHHHHHHH-HHHcCChhHHHHHHHHHHHhCCCChHH--HHHHHHHHHHhccCCCCCchhHHHHH
Q 007648 12 DDLLYEEELLRNPFSLKLWWRYLV-AKREAPFKKRFVIYERALKALPGSYKL--WHAYLIERLSIVKNLPITHPEYETLN 88 (594)
Q Consensus 12 ~~~~~e~~l~~~P~~~~~w~~~~~-~~~~~~~~~a~~~~e~al~~~P~s~~l--W~~~~~~~~~~~~~~~~~~~~~~~A~ 88 (594)
+.+-|..+..-||++.+.|...++ +....+.+.|..+.-++-+..|--... |....- .+...++..+|+
T Consensus 511 A~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~--------yyLea~n~h~aV 582 (1238)
T KOG1127|consen 511 AKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP--------YYLEAHNLHGAV 582 (1238)
T ss_pred HHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc--------cccCccchhhHH
Confidence 345677888899999999999999 445788899998877777776643333 433111 225678889999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHH--HHHHHHHcCCchHHHHHHHHHHH
Q 007648 89 NTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEI--YLRFVEQEGIPIETSLRVYRRYL 166 (594)
Q Consensus 89 ~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~--~~~~~~~~~~~~~~a~~~~~~~l 166 (594)
.-|+.|++.+|.+...|..+++.+.+.|.+..|.++|.||..+.|.+ .+-. -+.++..+|.+ +++...+...+
T Consensus 583 ~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s----~y~~fk~A~~ecd~GkY-keald~l~~ii 657 (1238)
T KOG1127|consen 583 CEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS----KYGRFKEAVMECDNGKY-KEALDALGLII 657 (1238)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh----HHHHHHHHHHHHHhhhH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999964 2222 23455678889 99999998877
Q ss_pred hhCCCCH-------HHHHH---HHHhcccHHHHHHHHHHhhcCcccccccc-cchHHHHHHHHHHHhhcccccccCcHHH
Q 007648 167 KYDPSHI-------EDFIE---FLVKSKLWQEAAERLASVLNDDQFYSIKG-KTKHRLWLELCDLLTTHATEISGLNVDA 235 (594)
Q Consensus 167 ~~~p~~~-------~~~~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 235 (594)
....... +.+++ .+...|-..++...+++.+..-...-... .+....|.-..+.+..
T Consensus 658 ~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~------------ 725 (1238)
T KOG1127|consen 658 YAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYI------------ 725 (1238)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHH------------
Confidence 6543322 12221 12222333333333333331000000000 0112233322111100
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHHHhcc---HH---HHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCC
Q 007648 236 IIRGGIRKFTDEVGRLWTSLADYYIRREL---FE---KARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDL 309 (594)
Q Consensus 236 ~~~~~~~~~p~~~~~~~~~la~~~~~~g~---~~---~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~ 309 (594)
.++.. -..|. ......+-.-....+. .+ -+...+-..++...+.. ..|+..+.+-
T Consensus 726 f~q~e-~~~vn--~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~---~WyNLGinyl------------- 786 (1238)
T KOG1127|consen 726 FSQEE-PSIVN--MHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMY---PWYNLGINYL------------- 786 (1238)
T ss_pred HHHhc-ccchH--HHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccc---hHHHHhHHHH-------------
Confidence 00000 00111 0111111110111111 01 12222222222221111 1111111111
Q ss_pred CCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHH
Q 007648 310 SVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWH 389 (594)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~ 389 (594)
+.+..+. ++..+...++.-+.+ +++...++...|.
T Consensus 787 ------------------------r~f~~l~---------et~~~~~~Ai~c~Kk------------aV~L~ann~~~Wn 821 (1238)
T KOG1127|consen 787 ------------------------RYFLLLG---------ETMKDACTAIRCCKK------------AVSLCANNEGLWN 821 (1238)
T ss_pred ------------------------HHHHHcC---------CcchhHHHHHHHHHH------------HHHHhhccHHHHH
Confidence 1111110 001112234555655 5788889999999
Q ss_pred HHHHHhc-CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHH
Q 007648 390 RRVKIFE-GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWA 468 (594)
Q Consensus 390 ~~~~~~~-~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~ 468 (594)
.+|.+-. |++.-+..+|-+++...|. ....|.++|.+..+..+++.|-..|.++..++|.+. .-|+.-+
T Consensus 822 aLGVlsg~gnva~aQHCfIks~~sep~------~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl----~~WlG~A 891 (1238)
T KOG1127|consen 822 ALGVLSGIGNVACAQHCFIKSRFSEPT------CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNL----VQWLGEA 891 (1238)
T ss_pred HHHHhhccchhhhhhhhhhhhhhcccc------chhheeccceeEEecccHHHhhHHHHhhhhcCchhh----HHHHHHH
Confidence 9999854 7899999999998875433 568899999999999999999999999999999998 8899999
Q ss_pred HHHHhcCChHHHHHHHHHHhcCC--chhH----h----hhhh-ccCC----------hhhh----HHhh----ccHhhHH
Q 007648 469 EMELRHKNFKGALELMRRATAEP--SVEV----R----RRVA-ADGN----------EPVQ----MKLH----KSLRLWT 519 (594)
Q Consensus 469 ~~~~~~~~~~~A~~~~~~al~~~--p~~~----~----~~~~-~~~~----------~~~~----~~~~----~~~~~~~ 519 (594)
.+....|+.-++..+|.-.-..+ .+.. | ..+. ..|+ .+.. ..++ ++-..+.
T Consensus 892 li~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~ 971 (1238)
T KOG1127|consen 892 LIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYA 971 (1238)
T ss_pred HhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHH
Confidence 98888998888888887733332 2211 1 0111 1111 1110 1111 2333455
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHhc------cCCchHHHHHHHHHHHHhchhhhhhhcc
Q 007648 520 FYVDLEESLGNLESTRAVYERILDL------RIATPQIIINYALLLEVWTLLHVFLLHV 572 (594)
Q Consensus 520 ~~~~~~~~~g~~~~A~~~~~~al~~------~P~~~~~~~~~~~~~~~~g~~~~a~~~~ 572 (594)
..+-...+++.+..|...+.|.+.+ ....+.+.-++++++...|.|+.|....
T Consensus 972 ~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~ 1030 (1238)
T KOG1127|consen 972 ANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKAS 1030 (1238)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhh
Confidence 5556666777778888888887763 2344556667888888888888766543
No 91
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.29 E-value=6.4e-11 Score=109.40 Aligned_cols=123 Identities=15% Similarity=0.247 Sum_probs=109.2
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH-HhcC
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEME-LRHK 475 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~-~~~~ 475 (594)
++.+++...+++++... |+ +++.|..+|.++...|+++.|...|++|++..|+++ .++..++..+ .+.|
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~-----~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~----~~~~~lA~aL~~~~g 122 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQ-----NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA----ELYAALATVLYYQAG 122 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhcC
Confidence 45677888999999864 43 689999999999999999999999999999999999 9999999865 5667
Q ss_pred C--hHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCch
Q 007648 476 N--FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP 549 (594)
Q Consensus 476 ~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~ 549 (594)
+ .++|+++++++++.+|+ ++..+..++..+...|++++|+..|++++++.|.+.
T Consensus 123 ~~~~~~A~~~l~~al~~dP~--------------------~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 123 QHMTPQTREMIDKALALDAN--------------------EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred CCCcHHHHHHHHHHHHhCCC--------------------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 6 59999999999999995 668889999999999999999999999999987765
No 92
>PLN02789 farnesyltranstransferase
Probab=99.29 E-value=8.2e-10 Score=109.30 Aligned_cols=216 Identities=15% Similarity=0.141 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhh
Q 007648 249 GRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDI 328 (594)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 328 (594)
.+++--+-.++...++.++|...+.++|..+|.+. .+|......... ++
T Consensus 37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~y---taW~~R~~iL~~--------L~-------------------- 85 (320)
T PLN02789 37 REAMDYFRAVYASDERSPRALDLTADVIRLNPGNY---TVWHFRRLCLEA--------LD-------------------- 85 (320)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhH---HHHHHHHHHHHH--------cc--------------------
Confidence 45555555566778899999999999999999876 344432221111 00
Q ss_pred HhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CC--chhHHH
Q 007648 329 RLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GN--PTKQIL 404 (594)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~--~~~a~~ 404 (594)
..+..++..+++ ++..+|.+.++|+.++.+.. ++ .+++..
T Consensus 86 ------------------------~~l~eeL~~~~~------------~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 86 ------------------------ADLEEELDFAED------------VAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred ------------------------hhHHHHHHHHHH------------HHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 012234455555 57889999999998877664 43 367899
Q ss_pred HHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhc---CCh----
Q 007648 405 TYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRH---KNF---- 477 (594)
Q Consensus 405 ~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~---~~~---- 477 (594)
.+++++.. +|. +..+|...+-+....|+++++++.++++|+.+|.|. ++|...+.+..+. |++
T Consensus 130 ~~~kal~~-dpk-----Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~----sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 130 FTRKILSL-DAK-----NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN----SAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred HHHHHHHh-Ccc-----cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch----hHHHHHHHHHHhccccccccccH
Confidence 99999985 553 578999999999999999999999999999999999 9999988776544 333
Q ss_pred HHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHH----hCChHHHHHHHHHHHhccCCchHHHH
Q 007648 478 KGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEES----LGNLESTRAVYERILDLRIATPQIII 553 (594)
Q Consensus 478 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~P~~~~~~~ 553 (594)
+++.....++|..+|+ +...|..++-++.. +++..+|.+...++++.+|.++.+..
T Consensus 200 e~el~y~~~aI~~~P~--------------------N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~ 259 (320)
T PLN02789 200 DSELKYTIDAILANPR--------------------NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALS 259 (320)
T ss_pred HHHHHHHHHHHHhCCC--------------------CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHH
Confidence 4688888899999995 56888888888877 45667799999999999999999999
Q ss_pred HHHHHHHH
Q 007648 554 NYALLLEV 561 (594)
Q Consensus 554 ~~~~~~~~ 561 (594)
-+++++..
T Consensus 260 ~l~d~~~~ 267 (320)
T PLN02789 260 DLLDLLCE 267 (320)
T ss_pred HHHHHHHh
Confidence 99999975
No 93
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1.3e-10 Score=108.88 Aligned_cols=221 Identities=13% Similarity=0.176 Sum_probs=173.9
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhh
Q 007648 253 TSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDV 332 (594)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (594)
..+|..|.+.|-+.+|.+-++.+|+..|....+..+-..|..+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQ----------------------------------- 271 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQ----------------------------------- 271 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhcc-----------------------------------
Confidence 467999999999999999999999988766543222222221110
Q ss_pred hhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHH
Q 007648 333 NLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAV 410 (594)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai 410 (594)
-..++..|.+ .+...|.++......+++++ ++.++|.++|+.++
T Consensus 272 ----------------------P~~AL~~~~~------------gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vl 317 (478)
T KOG1129|consen 272 ----------------------PERALLVIGE------------GLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVL 317 (478)
T ss_pred ----------------------HHHHHHHHhh------------hhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHH
Confidence 0113344555 58889999999999999986 89999999999999
Q ss_pred hccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 007648 411 RTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE 490 (594)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 490 (594)
+. +|.+ +++.-..|.-|.=.++++-|...|.|.|+.--.+| ++++..|.+-+-.+++|-+...|+||+..
T Consensus 318 k~-~~~n-----vEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~sp----eLf~NigLCC~yaqQ~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 318 KL-HPIN-----VEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSP----ELFCNIGLCCLYAQQIDLVLPSFQRALST 387 (478)
T ss_pred hc-CCcc-----ceeeeeeeeccccCCChHHHHHHHHHHHHhcCCCh----HHHhhHHHHHHhhcchhhhHHHHHHHHhh
Confidence 86 4432 22222233333347889999999999999999999 88888888766789999999999999976
Q ss_pred CchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhh
Q 007648 491 PSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFL 569 (594)
Q Consensus 491 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~ 569 (594)
..++. .-.++|...+.+....|++.-|.++|+-|+.-+|++.++++|++-+..+.|+.++|.
T Consensus 388 at~~~-----------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Ar 449 (478)
T KOG1129|consen 388 ATQPG-----------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGAR 449 (478)
T ss_pred ccCcc-----------------hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHH
Confidence 54210 235899999999989999999999999999999999999999999999999999986
No 94
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=2e-06 Score=87.49 Aligned_cols=131 Identities=11% Similarity=0.118 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHH
Q 007648 28 KLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIM 107 (594)
Q Consensus 28 ~~w~~~~~~~~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~ 107 (594)
..|...=.+-..+++++|.+...+.+...|++.+....-+.-. ++.+.|+.|..+.++=....-.+ ...+.
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvVal--------Iq~~ky~~ALk~ikk~~~~~~~~-~~~fE 84 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVAL--------IQLDKYEDALKLIKKNGALLVIN-SFFFE 84 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhh--------hhhhHHHHHHHHHHhcchhhhcc-hhhHH
Confidence 5566555566689999999999999999999887766554443 56677887775444333222121 22256
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCH
Q 007648 108 YLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHI 173 (594)
Q Consensus 108 y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~ 173 (594)
-+-++.+.+..++|...++ .+ ++.+ ..+-...++...+++++ ++|.++|+..++.+.++.
T Consensus 85 KAYc~Yrlnk~Dealk~~~-~~--~~~~--~~ll~L~AQvlYrl~~y-dealdiY~~L~kn~~dd~ 144 (652)
T KOG2376|consen 85 KAYCEYRLNKLDEALKTLK-GL--DRLD--DKLLELRAQVLYRLERY-DEALDIYQHLAKNNSDDQ 144 (652)
T ss_pred HHHHHHHcccHHHHHHHHh-cc--cccc--hHHHHHHHHHHHHHhhH-HHHHHHHHHHHhcCCchH
Confidence 6777888899999988888 33 3332 45666677888888888 899999988876655443
No 95
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.21 E-value=1.5e-10 Score=106.86 Aligned_cols=115 Identities=13% Similarity=0.086 Sum_probs=106.0
Q ss_pred cCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccH
Q 007648 436 YKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSL 515 (594)
Q Consensus 436 ~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 515 (594)
.++.++++..++++++.+|+++ ..|+.+|..+...|++++|...|++|++..|+ ++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~----~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~--------------------~~ 107 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNS----EQWALLGEYYLWRNDYDNALLAYRQALQLRGE--------------------NA 107 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------------------CH
Confidence 5677999999999999999999 99999999999999999999999999999995 67
Q ss_pred hhHHHHHHH-HHHhCC--hHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhhhcccC
Q 007648 516 RLWTFYVDL-EESLGN--LESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFLLHVPF 574 (594)
Q Consensus 516 ~~~~~~~~~-~~~~g~--~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 574 (594)
.++..++.+ +.+.|+ .++|+++++++++.+|+++.++.++|..+.+.|++++|+.++..
T Consensus 108 ~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 108 ELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999996 467787 59999999999999999999999999999999999999866543
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.20 E-value=3.7e-08 Score=100.90 Aligned_cols=53 Identities=8% Similarity=-0.127 Sum_probs=39.3
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhcc-C--------CchHHHHHHHHHHHHhchhhhhhhc
Q 007648 519 TFYVDLEESLGNLESTRAVYERILDLR-I--------ATPQIIINYALLLEVWTLLHVFLLH 571 (594)
Q Consensus 519 ~~~~~~~~~~g~~~~A~~~~~~al~~~-P--------~~~~~~~~~~~~~~~~g~~~~a~~~ 571 (594)
.+.+......|+.++|...+++....- . ....+....+..+...|++++|+..
T Consensus 268 ~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~ 329 (355)
T cd05804 268 LHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALEL 329 (355)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHH
Confidence 466777778899999999999876632 1 1234556778888899999999743
No 97
>PLN02789 farnesyltranstransferase
Probab=99.19 E-value=9.6e-10 Score=108.78 Aligned_cols=155 Identities=15% Similarity=0.131 Sum_probs=133.8
Q ss_pred hhccCCCChHHHHHHHHHhc--C-CchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCH--HHHHHHHHHHHh
Q 007648 377 LLRQNPHNVEQWHRRVKIFE--G-NPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDI--ANARVIFDKAVQ 451 (594)
Q Consensus 377 ~l~~~p~~~~~~~~~~~~~~--~-~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~A~~~~~kal~ 451 (594)
++..+|.+..+|..++.++. + ++++++..++++++. +|+ +..+|.+.+.+....|.. +++...++++++
T Consensus 63 aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~-npk-----nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~ 136 (320)
T PLN02789 63 VIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED-NPK-----NYQIWHHRRWLAEKLGPDAANKELEFTRKILS 136 (320)
T ss_pred HHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH-CCc-----chHHhHHHHHHHHHcCchhhHHHHHHHHHHHH
Confidence 68999999999999888775 4 578999999999986 443 568899998888877763 788999999999
Q ss_pred ccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHh---
Q 007648 452 VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESL--- 528 (594)
Q Consensus 452 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 528 (594)
.+|+|. .+|...+-+....|++++|.+.+.++|+.+|. +...|.+.+.+..++
T Consensus 137 ~dpkNy----~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~--------------------N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 137 LDAKNY----HAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR--------------------NNSAWNQRYFVITRSPLL 192 (320)
T ss_pred hCcccH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC--------------------chhHHHHHHHHHHhcccc
Confidence 999999 99999999988999999999999999999995 567888887776655
Q ss_pred CCh----HHHHHHHHHHHhccCCchHHHHHHHHHHHH
Q 007648 529 GNL----ESTRAVYERILDLRIATPQIIINYALLLEV 561 (594)
Q Consensus 529 g~~----~~A~~~~~~al~~~P~~~~~~~~~~~~~~~ 561 (594)
|.+ +++.....++|.++|++..+|..++.++..
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred ccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 333 578888899999999999999999999876
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.18 E-value=7.8e-08 Score=98.50 Aligned_cols=205 Identities=13% Similarity=0.009 Sum_probs=146.9
Q ss_pred CCCCHHHHHHHHHHHH-cCChhHHHHHHHHHHHhCCCChHHHHH---HHHHHHHhccCCCCCchhHHHHHHHHHHHHHhc
Q 007648 23 NPFSLKLWWRYLVAKR-EAPFKKRFVIYERALKALPGSYKLWHA---YLIERLSIVKNLPITHPEYETLNNTFERALVTM 98 (594)
Q Consensus 23 ~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~s~~lW~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 98 (594)
||.+...|...+.+.. .++++.+...+.++.+..|.+.+.+.. .+... ...|++++|...+++++..+
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~--------~~~g~~~~A~~~~~~~l~~~ 73 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSA--------WIAGDLPKALALLEQLLDDY 73 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHHHC
Confidence 7888888888887554 678888899999999998866443322 22211 45689999999999999999
Q ss_pred CCChHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHH
Q 007648 99 HKMPRIWIMYLETLTS----QKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIE 174 (594)
Q Consensus 99 P~~~~lw~~y~~~~~~----~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~ 174 (594)
|.++..+.. +..+.. .+....+...+.......|.. ......++......|++ ++|...++++++..|++..
T Consensus 74 P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~a~~~~~~G~~-~~A~~~~~~al~~~p~~~~ 149 (355)
T cd05804 74 PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY--WYLLGMLAFGLEEAGQY-DRAEEAARRALELNPDDAW 149 (355)
T ss_pred CCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCc--HHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCcH
Confidence 999987773 222222 344555555555433333432 23333445566788998 9999999999999999875
Q ss_pred ---HHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHH
Q 007648 175 ---DFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRL 251 (594)
Q Consensus 175 ---~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 251 (594)
.+..++...|++++|...+++.+... |. .|......
T Consensus 150 ~~~~la~i~~~~g~~~eA~~~l~~~l~~~------------------------~~-----------------~~~~~~~~ 188 (355)
T cd05804 150 AVHAVAHVLEMQGRFKEGIAFMESWRDTW------------------------DC-----------------SSMLRGHN 188 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhhcc------------------------CC-----------------CcchhHHH
Confidence 34567888999999999998877310 00 00001346
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhc
Q 007648 252 WTSLADYYIRRELFEKARDIFEEGMMTVV 280 (594)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 280 (594)
|..++.++...|++++|..+|++++...|
T Consensus 189 ~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 189 WWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 88899999999999999999999976555
No 99
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.15 E-value=1.9e-09 Score=116.93 Aligned_cols=148 Identities=11% Similarity=0.004 Sum_probs=134.5
Q ss_pred hccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 007648 378 LRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK 455 (594)
Q Consensus 378 l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~ 455 (594)
.+..|+++++...++.+.. |.+++|...+++++... |+ ...++..++....+.+.+++|+..+++++..+|+
T Consensus 79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd-----~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~ 152 (694)
T PRK15179 79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PD-----SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS 152 (694)
T ss_pred HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CC-----cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC
Confidence 6778999999999999885 89999999999999974 43 6899999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHH
Q 007648 456 TVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTR 535 (594)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 535 (594)
++ ...+.++..+.+.|++++|..+|++++..+|+ ++..|+.++..+...|+.++|.
T Consensus 153 ~~----~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~--------------------~~~~~~~~a~~l~~~G~~~~A~ 208 (694)
T PRK15179 153 SA----REILLEAKSWDEIGQSEQADACFERLSRQHPE--------------------FENGYVGWAQSLTRRGALWRAR 208 (694)
T ss_pred CH----HHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC--------------------cHHHHHHHHHHHHHcCCHHHHH
Confidence 99 88899999999999999999999999998884 5789999999999999999999
Q ss_pred HHHHHHHhccCCchHHHHHH
Q 007648 536 AVYERILDLRIATPQIIINY 555 (594)
Q Consensus 536 ~~~~~al~~~P~~~~~~~~~ 555 (594)
..|++|++...+....+.++
T Consensus 209 ~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 209 DVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHHHhhCcchHHHHHH
Confidence 99999999887666555443
No 100
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.15 E-value=9.1e-10 Score=96.37 Aligned_cols=89 Identities=19% Similarity=0.116 Sum_probs=48.5
Q ss_pred cCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccH
Q 007648 39 EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFI 118 (594)
Q Consensus 39 ~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~ 118 (594)
.|+++.|...|.+++...|.+...|...+... ...|++++|...|++|+..+|.++..|..++.++...|++
T Consensus 37 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~--------~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 37 EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTW--------MMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH--------HHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 45555555555555555555555555544443 2235555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhCCCC
Q 007648 119 TKARRTFDRALCALPVT 135 (594)
Q Consensus 119 ~~A~~~~~ral~~~p~~ 135 (594)
++|+..|++++...|.+
T Consensus 109 ~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 109 GLAREAFQTAIKMSYAD 125 (144)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 55555555555555543
No 101
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.14 E-value=1.2e-09 Score=94.91 Aligned_cols=120 Identities=15% Similarity=0.080 Sum_probs=103.7
Q ss_pred HHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHH
Q 007648 404 LTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483 (594)
Q Consensus 404 ~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 483 (594)
..|++++.. +|. ...+.+.+|..+...|++++|...+++++..+|.++ .+|..++.++...|++++|..+
T Consensus 4 ~~~~~~l~~-~p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~~~~~~A~~~ 73 (135)
T TIGR02552 4 ATLKDLLGL-DSE-----QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS----RYWLGLAACCQMLKEYEEAIDA 73 (135)
T ss_pred hhHHHHHcC-Chh-----hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 467787774 553 456778888888899999999999999999999998 9999999999899999999999
Q ss_pred HHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHH
Q 007648 484 MRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIII 553 (594)
Q Consensus 484 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~ 553 (594)
++++++..|. ++..+...+.++...|++++|.+.+++++++.|+++..+.
T Consensus 74 ~~~~~~~~p~--------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 74 YALAAALDPD--------------------DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred HHHHHhcCCC--------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 9999999984 5688888899999999999999999999999999887553
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.13 E-value=7.4e-09 Score=99.36 Aligned_cols=192 Identities=11% Similarity=0.057 Sum_probs=134.2
Q ss_pred hCCCCHHHHHHHHHHH-HcCChhHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHh
Q 007648 22 RNPFSLKLWWRYLVAK-REAPFKKRFVIYERALKALPGSY---KLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVT 97 (594)
Q Consensus 22 ~~P~~~~~w~~~~~~~-~~~~~~~a~~~~e~al~~~P~s~---~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 97 (594)
.++...+.+...+... ..|+++.|...|++++..+|.++ ..|...+... ...|++++|+..|+++++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~--------~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAY--------YKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH--------HhcCCHHHHHHHHHHHHHH
Confidence 4456677777777744 57999999999999999999876 3455444443 4568899999999999999
Q ss_pred cCCChH---HHHHHHHHHHhc--------ccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 007648 98 MHKMPR---IWIMYLETLTSQ--------KFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYL 166 (594)
Q Consensus 98 ~P~~~~---lw~~y~~~~~~~--------~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l 166 (594)
+|+++. .|...+.++... |+++.|...|++++...|.+ ...|..+..+....+.. ..
T Consensus 100 ~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~a~~~~~~~~~~~-~~--------- 167 (235)
T TIGR03302 100 HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS--EYAPDAKKRMDYLRNRL-AG--------- 167 (235)
T ss_pred CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC--hhHHHHHHHHHHHHHHH-HH---------
Confidence 998876 577777777664 77888999999999988875 34444433322110000 00
Q ss_pred hhCCCCHHHHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccc
Q 007648 167 KYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTD 246 (594)
Q Consensus 167 ~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 246 (594)
.....+.++...|++.+|...|+++++ ..|+. |
T Consensus 168 -----~~~~~a~~~~~~g~~~~A~~~~~~al~------------------------~~p~~-----------------~- 200 (235)
T TIGR03302 168 -----KELYVARFYLKRGAYVAAINRFETVVE------------------------NYPDT-----------------P- 200 (235)
T ss_pred -----HHHHHHHHHHHcCChHHHHHHHHHHHH------------------------HCCCC-----------------c-
Confidence 001344567788888888888877763 11110 0
Q ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Q 007648 247 EVGRLWTSLADYYIRRELFEKARDIFEEGMMTVV 280 (594)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 280 (594)
...++|..+|..+...|++++|.++++......|
T Consensus 201 ~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 201 ATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1257899999999999999999999888776654
No 103
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=1.7e-07 Score=98.55 Aligned_cols=143 Identities=16% Similarity=0.084 Sum_probs=90.6
Q ss_pred hHhHHHHhhCCCCHHHHHHHHHHHH-cCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHH
Q 007648 14 LLYEEELLRNPFSLKLWWRYLVAKR-EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFE 92 (594)
Q Consensus 14 ~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 92 (594)
..=|...+..|.+.+......-... .++-+.-+.-++.-+..++.+......++.... ..|+.++.+..=.
T Consensus 66 ~~~e~~~~s~~~sSe~~~ds~sD~s~~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llr--------k~~dl~kl~~ar~ 137 (881)
T KOG0128|consen 66 DVGEIEGSSLESSSEVSMDSDSDSSNEGGGNQEIRTLEEELAINSYKYAQMVQLIGLLR--------KLGDLEKLRQARL 137 (881)
T ss_pred hhhhhccccCCccCcccccccCCccccccchhHHHHHHHHhcccccchHHHHHHHHHHH--------HhcchHHHHHHHH
Confidence 3345556666777776666655432 333434444555555555555444444444431 2367777777778
Q ss_pred HHHHhcCCChHHHHHHHHHHHhc---ccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCC-------chHHHHHHH
Q 007648 93 RALVTMHKMPRIWIMYLETLTSQ---KFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGI-------PIETSLRVY 162 (594)
Q Consensus 93 ~al~~~P~~~~lw~~y~~~~~~~---~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~-------~~~~a~~~~ 162 (594)
.+.++.|.++.+|..++.-+... ++...+...|++|+.-. . ...+|..++.+....++ + +..+.+|
T Consensus 138 ~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy-~--~v~iw~e~~~y~~~~~~~~~~~~d~-k~~R~vf 213 (881)
T KOG0128|consen 138 EMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY-N--SVPIWEEVVNYLVGFGNVAKKSEDY-KKERSVF 213 (881)
T ss_pred HHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc-c--cchHHHHHHHHHHhccccccccccc-hhhhHHH
Confidence 88888999999999999877543 46788899999998632 2 36899999888764333 2 4455555
Q ss_pred HHHHhh
Q 007648 163 RRYLKY 168 (594)
Q Consensus 163 ~~~l~~ 168 (594)
.++++.
T Consensus 214 ~ral~s 219 (881)
T KOG0128|consen 214 ERALRS 219 (881)
T ss_pred HHHHhh
Confidence 555543
No 104
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.11 E-value=3.7e-08 Score=102.04 Aligned_cols=258 Identities=16% Similarity=0.166 Sum_probs=179.9
Q ss_pred cCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhC
Q 007648 98 MHKMPRIWIMYLETLTSQKFITKARRTFDRALCA--------LPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYD 169 (594)
Q Consensus 98 ~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~--------~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~ 169 (594)
+|.-......++..+..+|+++.|...|++|++. +|. ....-..++.++..++++ .+|+.+|++++.+-
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~--va~~l~~~a~~y~~~~k~-~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLV--VASMLNILALVYRSLGKY-DEAVNLYEEALTIR 271 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHH--HHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence 4666667777899999999999999999999998 332 122233467777888999 99999999999763
Q ss_pred -----CCCHH------HHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHH
Q 007648 170 -----PSHIE------DFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIR 238 (594)
Q Consensus 170 -----p~~~~------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 238 (594)
++++. .++.+|...|++++|...++++++ +...
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~--------------I~~~---------------------- 315 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALE--------------IYEK---------------------- 315 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH--------------HHHH----------------------
Confidence 44442 234568889999999999998872 1111
Q ss_pred HHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCccccccc
Q 007648 239 GGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDE 318 (594)
Q Consensus 239 ~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~ 318 (594)
.....+.........++..+...++++.|..+|+++++...+.. +..
T Consensus 316 -~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~------------------------g~~-------- 362 (508)
T KOG1840|consen 316 -LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP------------------------GED-------- 362 (508)
T ss_pred -hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc------------------------ccc--------
Confidence 01111122356778888889999999999999998886532110 100
Q ss_pred ccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHh--c
Q 007648 319 EHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF--E 396 (594)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~ 396 (594)
+|.=+.....++.++ .
T Consensus 363 --------------------------------------------------------------~~~~a~~~~nl~~l~~~~ 380 (508)
T KOG1840|consen 363 --------------------------------------------------------------NVNLAKIYANLAELYLKM 380 (508)
T ss_pred --------------------------------------------------------------chHHHHHHHHHHHHHHHh
Confidence 000011222344444 3
Q ss_pred CCchhHHHHHHHHHhccCCCcc--cCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----cCCChhhHHHHHHHHHHH
Q 007648 397 GNPTKQILTYTEAVRTVDPMKA--VGKPHTLWVAFAKLYETYKDIANARVIFDKAVQV----NYKTVDHLASIWCEWAEM 470 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~----~p~~~~~~~~~~~~~~~~ 470 (594)
|++++|..+|++||........ .........++|..+.+.+.+..|..+|.++..+ -|++|++. ..+..++..
T Consensus 381 gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~-~~~~nL~~~ 459 (508)
T KOG1840|consen 381 GKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVT-YTYLNLAAL 459 (508)
T ss_pred cchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchH-HHHHHHHHH
Confidence 8899999999999986422111 1113455667788888899999999999988764 46666443 578888999
Q ss_pred HHhcCChHHHHHHHHHHhcC
Q 007648 471 ELRHKNFKGALELMRRATAE 490 (594)
Q Consensus 471 ~~~~~~~~~A~~~~~~al~~ 490 (594)
+.++|+++.|.++.++++..
T Consensus 460 Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 460 YRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999854
No 105
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.09 E-value=6.1e-09 Score=95.73 Aligned_cols=163 Identities=13% Similarity=0.069 Sum_probs=138.2
Q ss_pred hccCCCChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 007648 378 LRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK 455 (594)
Q Consensus 378 l~~~p~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~ 455 (594)
...+|.+..+ ..+...+ .|+-+....+..++... +|. ...+...+|....+.|++..|...+.++....|+
T Consensus 60 ~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~-----d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~ 132 (257)
T COG5010 60 VLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPK-----DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT 132 (257)
T ss_pred HhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc-Ccc-----cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC
Confidence 5678998888 6665554 37766666666664432 331 4556666899999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHH
Q 007648 456 TVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTR 535 (594)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 535 (594)
++ ++|..+|..+.+.|+++.|+.-|.+++++.|+ ++.+...++..+.-.|+++.|+
T Consensus 133 d~----~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~--------------------~p~~~nNlgms~~L~gd~~~A~ 188 (257)
T COG5010 133 DW----EAWNLLGAALDQLGRFDEARRAYRQALELAPN--------------------EPSIANNLGMSLLLRGDLEDAE 188 (257)
T ss_pred Ch----hhhhHHHHHHHHccChhHHHHHHHHHHHhccC--------------------CchhhhhHHHHHHHcCCHHHHH
Confidence 99 99999999999999999999999999999995 5677788888888889999999
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHHhchhhhhhhc
Q 007648 536 AVYERILDLRIATPQIIINYALLLEVWTLLHVFLLH 571 (594)
Q Consensus 536 ~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~~~ 571 (594)
.++.++...-|.+..+.-|++.+...+|++.+|...
T Consensus 189 ~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 189 TLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 999999998888999999999999999999999643
No 106
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.09 E-value=1.7e-08 Score=104.55 Aligned_cols=256 Identities=16% Similarity=0.144 Sum_probs=164.7
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHhh--------CCCCHH---HHHHHHHhcccHHHHHHHHHHhhcCcccccccccchH
Q 007648 143 IYLRFVEQEGIPIETSLRVYRRYLKY--------DPSHIE---DFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKH 211 (594)
Q Consensus 143 ~~~~~~~~~~~~~~~a~~~~~~~l~~--------~p~~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 211 (594)
.++..+...|++ +.|+..++.+++. +|.-.. .++.+|...+++.+|..+|++++....
T Consensus 204 ~La~~y~~~g~~-e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e---------- 272 (508)
T KOG1840|consen 204 NLAEMYAVQGRL-EKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE---------- 272 (508)
T ss_pred HHHHHHHHhccH-HHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----------
Confidence 356667778888 9999999999887 333222 356778889999999999998873110
Q ss_pred HHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHH
Q 007648 212 RLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDS 291 (594)
Q Consensus 212 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~ 291 (594)
...| ..+| .+..++.++|.+|.+.|++.+|...+++|+.+.....
T Consensus 273 ----------~~~G----------------~~h~-~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~-------- 317 (508)
T KOG1840|consen 273 ----------EVFG----------------EDHP-AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL-------- 317 (508)
T ss_pred ----------HhcC----------------CCCH-HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh--------
Confidence 0011 0111 1356899999999999999999999999987632100
Q ss_pred HHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchh
Q 007648 292 YSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPE 371 (594)
Q Consensus 292 ~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (594)
+...+ ++..
T Consensus 318 ----------------~~~~~-----------------------------------------~v~~-------------- 326 (508)
T KOG1840|consen 318 ----------------GASHP-----------------------------------------EVAA-------------- 326 (508)
T ss_pred ----------------ccChH-----------------------------------------HHHH--------------
Confidence 00000 0000
Q ss_pred hhhhhhhccCCCChHHHHHHHHHh--cCCchhHHHHHHHHHhccC--CCcccCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 007648 372 LANSVLLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVD--PMKAVGKPHTLWVAFAKLYETYKDIANARVIFD 447 (594)
Q Consensus 372 ~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 447 (594)
.....+.++ .+++++|..+|+++++... |.......+..+.++|.++...|++++|+..|+
T Consensus 327 ---------------~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k 391 (508)
T KOG1840|consen 327 ---------------QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYK 391 (508)
T ss_pred ---------------HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 000111111 1445556666666665432 111111257888999999999999999999999
Q ss_pred HHHhcc----CCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHH
Q 007648 448 KAVQVN----YKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVD 523 (594)
Q Consensus 448 kal~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (594)
+|++.. .............++....+.+++.+|-++|.++..+.+. + |. ....-...+..++-
T Consensus 392 ~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~-~-------g~-----~~~~~~~~~~nL~~ 458 (508)
T KOG1840|consen 392 KAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKL-C-------GP-----DHPDVTYTYLNLAA 458 (508)
T ss_pred HHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-h-------CC-----CCCchHHHHHHHHH
Confidence 999864 2211112233334455557889999999999998876531 0 00 00011245788899
Q ss_pred HHHHhCChHHHHHHHHHHHh
Q 007648 524 LEESLGNLESTRAVYERILD 543 (594)
Q Consensus 524 ~~~~~g~~~~A~~~~~~al~ 543 (594)
+|.++|+++.|.++.++++.
T Consensus 459 ~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 459 LYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHcccHHHHHHHHHHHHH
Confidence 99999999999999999984
No 107
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.09 E-value=2.2e-09 Score=116.50 Aligned_cols=128 Identities=13% Similarity=0.014 Sum_probs=121.3
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhc
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 501 (594)
.++++..+|.+..+.|.+++|...++++++..|++. .++..++..+.+.+++++|+..+++++...|+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~----~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-------- 152 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS----EAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-------- 152 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC--------
Confidence 579999999999999999999999999999999999 99999999999999999999999999999995
Q ss_pred cCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhhhccc
Q 007648 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFLLHVP 573 (594)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~~~~~ 573 (594)
++.....++....+.|++++|..+|++++..+|+++.+|+.+|..+...|+.++|...+.
T Consensus 153 ------------~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~ 212 (694)
T PRK15179 153 ------------SAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQ 212 (694)
T ss_pred ------------CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 678889999999999999999999999999999999999999999999999999975543
No 108
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.05 E-value=9.7e-08 Score=104.66 Aligned_cols=261 Identities=13% Similarity=0.109 Sum_probs=172.4
Q ss_pred hcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHHH
Q 007648 97 TMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDF 176 (594)
Q Consensus 97 ~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~ 176 (594)
..|.+..+|..++..+...+++++|..+++.++...|.. ..+|...+.+....++. .++.-+ +++...+.+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~--i~~yy~~G~l~~q~~~~-~~~~lv--~~l~~~~~~~--- 97 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKS--ISALYISGILSLSRRPL-NDSNLL--NLIDSFSQNL--- 97 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcc--eehHHHHHHHHHhhcch-hhhhhh--hhhhhccccc---
Confidence 468999999999999999999999999999999999975 56666666666555555 555544 4554444332
Q ss_pred HHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHH
Q 007648 177 IEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLA 256 (594)
Q Consensus 177 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la 256 (594)
++ .+. ..+-.++..++++ ..+...+|
T Consensus 98 --------~~-~~v--------------------------------------------e~~~~~i~~~~~~-k~Al~~LA 123 (906)
T PRK14720 98 --------KW-AIV--------------------------------------------EHICDKILLYGEN-KLALRTLA 123 (906)
T ss_pred --------ch-hHH--------------------------------------------HHHHHHHHhhhhh-hHHHHHHH
Confidence 11 011 1111122233333 45889999
Q ss_pred HHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhH
Q 007648 257 DYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSM 336 (594)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (594)
.+|.+.|+.++|.++|+++|..+|++.. +.+.++.+-.
T Consensus 124 ~~Ydk~g~~~ka~~~yer~L~~D~~n~~---aLNn~AY~~a--------------------------------------- 161 (906)
T PRK14720 124 EAYAKLNENKKLKGVWERLVKADRDNPE---IVKKLATSYE--------------------------------------- 161 (906)
T ss_pred HHHHHcCChHHHHHHHHHHHhcCcccHH---HHHHHHHHHH---------------------------------------
Confidence 9999999999999999999988876652 1111111000
Q ss_pred HHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhcCCchhHHHHHHHHHhccCCC
Q 007648 337 AEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPM 416 (594)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~y~~Ai~~~~~~ 416 (594)
.. +.++|+.++.+|+..
T Consensus 162 ----------------------------------------------------------e~-dL~KA~~m~~KAV~~---- 178 (906)
T PRK14720 162 ----------------------------------------------------------EE-DKEKAITYLKKAIYR---- 178 (906)
T ss_pred ----------------------------------------------------------Hh-hHHHHHHHHHHHHHH----
Confidence 01 346688888888863
Q ss_pred cccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHh
Q 007648 417 KAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVR 496 (594)
Q Consensus 417 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 496 (594)
+...+++..+..++++.+..+|++. +..+..-......-. +.+++..-
T Consensus 179 ----------------~i~~kq~~~~~e~W~k~~~~~~~d~----d~f~~i~~ki~~~~~-------~~~~~~~~----- 226 (906)
T PRK14720 179 ----------------FIKKKQYVGIEEIWSKLVHYNSDDF----DFFLRIERKVLGHRE-------FTRLVGLL----- 226 (906)
T ss_pred ----------------HHhhhcchHHHHHHHHHHhcCcccc----hHHHHHHHHHHhhhc-------cchhHHHH-----
Confidence 2345688999999999999999988 554443322111111 22222111
Q ss_pred hhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHH----hchhhhhhhcc
Q 007648 497 RRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEV----WTLLHVFLLHV 572 (594)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~----~g~~~~a~~~~ 572 (594)
..+|..| ...++++++..++.++|+.+|.|--+...++.+|.+ +..++++++..
T Consensus 227 ------------------~~l~~~y----~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s 284 (906)
T PRK14720 227 ------------------EDLYEPY----KALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMS 284 (906)
T ss_pred ------------------HHHHHHH----hhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHh
Confidence 1455555 456778999999999999999998888888888764 46778887666
Q ss_pred cCcccc
Q 007648 573 PFTFSG 578 (594)
Q Consensus 573 ~~~~~~ 578 (594)
-....|
T Consensus 285 ~l~~~~ 290 (906)
T PRK14720 285 DIGNNR 290 (906)
T ss_pred ccccCC
Confidence 666653
No 109
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.03 E-value=2.2e-06 Score=83.45 Aligned_cols=114 Identities=15% Similarity=0.069 Sum_probs=96.3
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCC
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~ 476 (594)
|+.+.|.+..+.+++.. . .+.+..-++ ..+.++...=++..++.++.+|++| .+++.+|++..+++.
T Consensus 277 ~~~~~A~~~i~~~Lk~~-~------D~~L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p----~L~~tLG~L~~k~~~ 343 (400)
T COG3071 277 GDHDEAQEIIEDALKRQ-W------DPRLCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDP----LLLSTLGRLALKNKL 343 (400)
T ss_pred CChHHHHHHHHHHHHhc-c------ChhHHHHHh--hcCCCCchHHHHHHHHHHHhCCCCh----hHHHHHHHHHHHhhH
Confidence 88899999999999852 1 233222111 1257889999999999999999999 999999999999999
Q ss_pred hHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhc
Q 007648 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL 544 (594)
Q Consensus 477 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 544 (594)
+.+|...|+.|++..|+ ..-|...++.+.++|+..+|-++++.++..
T Consensus 344 w~kA~~~leaAl~~~~s---------------------~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 344 WGKASEALEAALKLRPS---------------------ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHHhcCCC---------------------hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999993 466888899999999999999999999863
No 110
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=3.5e-09 Score=99.14 Aligned_cols=113 Identities=13% Similarity=0.116 Sum_probs=94.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhH
Q 007648 430 AKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQM 509 (594)
Q Consensus 430 a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 509 (594)
|+-+.+.++|.+|+..|.+||+++|.|+ -+|...+..+.+.|.++.|.+--+.|+.++|.
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nA----VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~---------------- 147 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNA----VYYCNRAAAYSKLGEYEDAVKDCESALSIDPH---------------- 147 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcc----hHHHHHHHHHHHhcchHHHHHHHHHHHhcChH----------------
Confidence 3444567889999999999999999998 88888888888899999999999999999984
Q ss_pred HhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhh
Q 007648 510 KLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLH 566 (594)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~ 566 (594)
....|..++..+..+|++++|...|.|||.++|+++..+.++..+..+.+.-.
T Consensus 148 ----yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 148 ----YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ----HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 56788888888888999999999999999999999988888887777665444
No 111
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.02 E-value=5.8e-08 Score=106.37 Aligned_cols=255 Identities=12% Similarity=0.068 Sum_probs=170.9
Q ss_pred hCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 007648 55 ALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPV 134 (594)
Q Consensus 55 ~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~ 134 (594)
-.|...+.|...+... ...+++++|..+++.+++.+|+++.+|+..|-++.+.++++.+..+ +++...+.
T Consensus 26 ~~p~n~~a~~~Li~~~--------~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~ 95 (906)
T PRK14720 26 YSLSKFKELDDLIDAY--------KSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ 95 (906)
T ss_pred CCcchHHHHHHHHHHH--------HhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc
Confidence 4588899999988875 4568999999999999999999999999999988988888887777 77777665
Q ss_pred CCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHH---HHHHHHHhcccHHHHHHHHHHhhcCcccccccccchH
Q 007648 135 TQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIE---DFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKH 211 (594)
Q Consensus 135 ~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 211 (594)
+ .-|... ..|-..+...|++.. .++.+|.+.|+.++|...+++++.
T Consensus 96 ~---~~~~~v---------------e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~------------- 144 (906)
T PRK14720 96 N---LKWAIV---------------EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK------------- 144 (906)
T ss_pred c---cchhHH---------------HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh-------------
Confidence 4 123222 222222233355553 345678888999999888887763
Q ss_pred HHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHH
Q 007648 212 RLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDS 291 (594)
Q Consensus 212 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~ 291 (594)
..|++ +.+..++|-.+... +.++|++.+++|+...-+..++..
T Consensus 145 -------------------------------~D~~n-~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~---- 187 (906)
T PRK14720 145 -------------------------------ADRDN-PEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVG---- 187 (906)
T ss_pred -------------------------------cCccc-HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchH----
Confidence 11222 56788888888888 999999999999876322211100
Q ss_pred HHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchh
Q 007648 292 YSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPE 371 (594)
Q Consensus 292 ~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (594)
.....++
T Consensus 188 ------------------------------------------------------------------~~e~W~k------- 194 (906)
T PRK14720 188 ------------------------------------------------------------------IEEIWSK------- 194 (906)
T ss_pred ------------------------------------------------------------------HHHHHHH-------
Confidence 1122333
Q ss_pred hhhhhhhccCCCChHHHHHHHHHhcCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007648 372 LANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQ 451 (594)
Q Consensus 372 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~ 451 (594)
.+..+|++.+.+....+...+... +.+ .+.++.-+-..|...+++++++.+++++|+
T Consensus 195 -----~~~~~~~d~d~f~~i~~ki~~~~~-----~~~-------------~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 195 -----LVHYNSDDFDFFLRIERKVLGHRE-----FTR-------------LVGLLEDLYEPYKALEDWDEVIYILKKILE 251 (906)
T ss_pred -----HHhcCcccchHHHHHHHHHHhhhc-----cch-------------hHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Confidence 356677777666544333322111 222 345556666677789999999999999999
Q ss_pred ccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 007648 452 VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE 490 (594)
Q Consensus 452 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 490 (594)
.+|+|. .+...++.++. +.+.. ...|+..++.
T Consensus 252 ~~~~n~----~a~~~l~~~y~--~kY~~-~~~~ee~l~~ 283 (906)
T PRK14720 252 HDNKNN----KAREELIRFYK--EKYKD-HSLLEDYLKM 283 (906)
T ss_pred cCCcch----hhHHHHHHHHH--HHccC-cchHHHHHHH
Confidence 999998 66666776653 22322 3444544444
No 112
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.01 E-value=9.8e-07 Score=92.69 Aligned_cols=140 Identities=16% Similarity=0.188 Sum_probs=104.4
Q ss_pred CCChHHH--HHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh
Q 007648 382 PHNVEQW--HRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTV 457 (594)
Q Consensus 382 p~~~~~~--~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~ 457 (594)
|...-.| +.++..+. |++++|+...++||.+.|. .+++++..|.++...|++++|...++.|-+.++.+-
T Consensus 189 ~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt------~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 189 PPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT------LVELYMTKARILKHAGDLKEAAEAMDEARELDLADR 262 (517)
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH
Confidence 3333445 44566653 8999999999999997443 689999999999999999999999999999999997
Q ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhH--HHHHHHHHHhCChHHHH
Q 007648 458 DHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLW--TFYVDLEESLGNLESTR 535 (594)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~A~ 535 (594)
-+-...+...++.|++++|.++...-.+.+-+. ..++++.--+| ..-|+.+.+.|++..|+
T Consensus 263 ----yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~-------------~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 263 ----YINSKCAKYLLRAGRIEEAEKTASLFTREDVDP-------------LSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred ----HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc-------------ccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 667777888899999999999988776655210 01111111233 44566677788888888
Q ss_pred HHHHHHHhc
Q 007648 536 AVYERILDL 544 (594)
Q Consensus 536 ~~~~~al~~ 544 (594)
+-|....+.
T Consensus 326 k~~~~v~k~ 334 (517)
T PF12569_consen 326 KRFHAVLKH 334 (517)
T ss_pred HHHHHHHHH
Confidence 777776664
No 113
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.99 E-value=7.7e-09 Score=102.84 Aligned_cols=124 Identities=13% Similarity=-0.089 Sum_probs=115.4
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhc
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 501 (594)
...+|+-.+.-+...|++++|++.+...++..|+|+ .+|...++++++.++.++|.+.+++++.+.|+
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~----~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-------- 372 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP----YYLELAGDILLEANKAKEAIERLKKALALDPN-------- 372 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--------
Confidence 467888888888899999999999999999999999 89999999999999999999999999999995
Q ss_pred cCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhh
Q 007648 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFL 569 (594)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~ 569 (594)
++.+|+.|++.+.+.|++.+|+.++.+.+..+|++|..|..+++.+..+|+-.++.
T Consensus 373 ------------~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 373 ------------SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred ------------ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH
Confidence 57899999999999999999999999999999999999999999999999888876
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.98 E-value=9e-09 Score=89.37 Aligned_cols=117 Identities=14% Similarity=0.054 Sum_probs=102.8
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHH
Q 007648 47 VIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFD 126 (594)
Q Consensus 47 ~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ 126 (594)
..|++++...|.+...-..++... ...|++++|...|++++..+|.++.+|...+.++..+|+++.|...|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~--------~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 75 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNL--------YQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYA 75 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHH--------HHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999998877666555554 455889999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHH
Q 007648 127 RALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIE 174 (594)
Q Consensus 127 ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~ 174 (594)
+++...|.+ ...|..++.+....|+. ++|.+.|+++++.+|++..
T Consensus 76 ~~~~~~p~~--~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 76 LAAALDPDD--PRPYFHAAECLLALGEP-ESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHhcCCCC--hHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhccccch
Confidence 999999976 67888888888889999 9999999999999998763
No 115
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=2.8e-07 Score=84.18 Aligned_cols=191 Identities=14% Similarity=0.119 Sum_probs=151.9
Q ss_pred cCChhHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 007648 39 EAPFKKRFVIYERALKALPGS---YKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQ 115 (594)
Q Consensus 39 ~~~~~~a~~~~e~al~~~P~s---~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~ 115 (594)
..+.+.+.++++..+...+.. .+.|.-|=...+-- ...+...-|...+++....+|.|..+-...|..+...
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAA-----ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~ 99 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAA-----LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEAT 99 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHH-----HHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHh
Confidence 356788888998888876654 58887665444322 2346778899999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHH---HHHHHHhcccHHHHHHH
Q 007648 116 KFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIED---FIEFLVKSKLWQEAAER 192 (594)
Q Consensus 116 ~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~---~~~~~~~~~~~~~a~~~ 192 (594)
|++++|.++|++.++-+|.+ ..++..-..+...+|.. .+|++-+...++..|.+.+. +.++|...|+|++|.-+
T Consensus 100 ~~~~~A~e~y~~lL~ddpt~--~v~~KRKlAilka~GK~-l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDDPTD--TVIRKRKLAILKAQGKN-LEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hchhhHHHHHHHHhccCcch--hHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 99999999999999999986 45666666777788998 89999999999999999985 45789999999999999
Q ss_pred HHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhc---cHHHHH
Q 007648 193 LASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRE---LFEKAR 269 (594)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g---~~~~A~ 269 (594)
+++++--.++ + +-.+..+|+++...| +..-|+
T Consensus 177 lEE~ll~~P~--------------------------------------------n-~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 177 LEELLLIQPF--------------------------------------------N-PLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred HHHHHHcCCC--------------------------------------------c-HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9988721111 1 234555666665555 567799
Q ss_pred HHHHHHHhhhccc
Q 007648 270 DIFEEGMMTVVTV 282 (594)
Q Consensus 270 ~~~~~al~~~p~~ 282 (594)
+.|.++++..|.+
T Consensus 212 kyy~~alkl~~~~ 224 (289)
T KOG3060|consen 212 KYYERALKLNPKN 224 (289)
T ss_pred HHHHHHHHhChHh
Confidence 9999999999844
No 116
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.8e-07 Score=90.95 Aligned_cols=116 Identities=13% Similarity=0.089 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccC
Q 007648 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADG 503 (594)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 503 (594)
..|-.-|+-..+.|++..|-..|..||.++|++......+|...+....+.|++.+|+.-=+.|++++|. ++
T Consensus 250 e~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s----yi---- 321 (486)
T KOG0550|consen 250 EVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS----YI---- 321 (486)
T ss_pred HHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH----HH----
Confidence 4555556666778888888888888888888888888788888888888888888888888888888884 11
Q ss_pred ChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCC--chHHHHHHHHHH
Q 007648 504 NEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA--TPQIIINYALLL 559 (594)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~--~~~~~~~~~~~~ 559 (594)
..++.-+..+..++++++|++-|++|++..-+ .-++|.+....+
T Consensus 322 ------------kall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aL 367 (486)
T KOG0550|consen 322 ------------KALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLAL 367 (486)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 44555667777778888888888888886543 334444433333
No 117
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.95 E-value=2e-08 Score=100.22 Aligned_cols=116 Identities=25% Similarity=0.411 Sum_probs=95.0
Q ss_pred CCcchHhHHHHhhCCCCHHHHHHHHHHHHc-----C--------ChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccC
Q 007648 10 SEDDLLYEEELLRNPFSLKLWWRYLVAKRE-----A--------PFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKN 76 (594)
Q Consensus 10 ~~~~~~~e~~l~~~P~~~~~w~~~~~~~~~-----~--------~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~ 76 (594)
......|++.++.+|.|.+.|+.++++..+ + -.++-..+|++||+.+|.+..||+.|+....+.
T Consensus 2 ~~r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~--- 78 (321)
T PF08424_consen 2 RKRTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKV--- 78 (321)
T ss_pred chHHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---
Confidence 455678999999999999999999998752 1 135777899999999999999999998876322
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc---ccHHHHHHHHHHHHHhCC
Q 007648 77 LPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQ---KFITKARRTFDRALCALP 133 (594)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~---~~~~~A~~~~~ral~~~p 133 (594)
.+.+...+.+++++..+|.++.+|..|+.+.... -.++..+.+|.++|+...
T Consensus 79 -----~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~ 133 (321)
T PF08424_consen 79 -----WDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALS 133 (321)
T ss_pred -----CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 3557788889999999999999999999998763 358899999999888654
No 118
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.94 E-value=1.5e-08 Score=102.73 Aligned_cols=112 Identities=14% Similarity=0.077 Sum_probs=98.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChh
Q 007648 427 VAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEP 506 (594)
Q Consensus 427 ~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 506 (594)
..-|.-....|+++.|+..|++|++.+|+++ .+|+.++.++...|++++|+..+++|+.++|+
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~----~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~------------- 68 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNA----ELYADRAQANIKLGNFTEAVADANKAIELDPS------------- 68 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-------------
Confidence 3446666678999999999999999999998 89999999999999999999999999999995
Q ss_pred hhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHh
Q 007648 507 VQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVW 562 (594)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~ 562 (594)
++..|..++.++..+|++++|+..|+++++++|+++.+...++.+..+.
T Consensus 69 -------~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 69 -------LAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred -------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 5678888999999999999999999999999999999888877775554
No 119
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.93 E-value=2.6e-08 Score=85.69 Aligned_cols=99 Identities=12% Similarity=0.043 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhcc
Q 007648 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAAD 502 (594)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 502 (594)
-+..+.+|......|+++.|..+|+-++..+|.++ ..|+.+|.+....|++++|+..|.+|+.+.|+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~----~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d--------- 101 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF----DYWFRLGECCQAQKHWGEAIYAYGRAAQIKID--------- 101 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---------
Confidence 34456666666677888888888888877888877 77888887777778888888888888887774
Q ss_pred CChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q 007648 503 GNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR 545 (594)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 545 (594)
+|....+.+..+...|+.+.|++.|+.|+...
T Consensus 102 -----------dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 102 -----------APQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred -----------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 56667777777777788888888888877765
No 120
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.93 E-value=6.3e-07 Score=94.10 Aligned_cols=140 Identities=17% Similarity=0.140 Sum_probs=103.8
Q ss_pred hHHH--HHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhh
Q 007648 423 HTLW--VAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (594)
Q Consensus 423 ~~~~--~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 500 (594)
..+| +-+|+.+...|++++|....++||...|..+ ++++..|.++.+.|++++|...++.|-++++.
T Consensus 192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~----ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~------- 260 (517)
T PF12569_consen 192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLV----ELYMTKARILKHAGDLKEAAEAMDEARELDLA------- 260 (517)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-------
Confidence 3456 4558889899999999999999999999999 99999999999999999999999999999984
Q ss_pred ccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhhhcccCcccchh
Q 007648 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFLLHVPFTFSGLC 580 (594)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 580 (594)
|--+-..-+....+.|+.++|.+....-.. ...+|. .++-......=..+.|..+.+.-..++|
T Consensus 261 -------------DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr-~~~~~~--~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 261 -------------DRYINSKCAKYLLRAGRIEEAEKTASLFTR-EDVDPL--SNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred -------------hHHHHHHHHHHHHHCCCHHHHHHHHHhhcC-CCCCcc--cCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 224445556667799999999998877533 222332 2222222222234556677777778888
Q ss_pred hhhhhheee
Q 007648 581 MFTFFFTVS 589 (594)
Q Consensus 581 ~~~~~~~~~ 589 (594)
...|+-+++
T Consensus 325 Lk~~~~v~k 333 (517)
T PF12569_consen 325 LKRFHAVLK 333 (517)
T ss_pred HHHHHHHHH
Confidence 887776543
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.92 E-value=3.5e-08 Score=102.24 Aligned_cols=160 Identities=13% Similarity=0.072 Sum_probs=102.4
Q ss_pred CCCChHHHHHHHHHhcCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhH
Q 007648 381 NPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHL 460 (594)
Q Consensus 381 ~p~~~~~~~~~~~~~~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~ 460 (594)
.|+++..|-.+|.+..+ -.+|++|.+.-+. ....+-..+|......+++.++...+++.++++|-.+
T Consensus 453 k~~d~~lyc~LGDv~~d-----~s~yEkawElsn~-----~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~--- 519 (777)
T KOG1128|consen 453 KDPDPRLYCLLGDVLHD-----PSLYEKAWELSNY-----ISARAQRSLALLILSNKDFSEADKHLERSLEINPLQL--- 519 (777)
T ss_pred CCCcchhHHHhhhhccC-----hHHHHHHHHHhhh-----hhHHHHHhhccccccchhHHHHHHHHHHHhhcCccch---
Confidence 45556666655555433 2355555543111 1234445555555556777777777777777777776
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHH
Q 007648 461 ASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540 (594)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 540 (594)
..|+.+|-+.++.++.+.|.+.|.+++...|+ +...|..+.-.+.++|+-.+|...+..
T Consensus 520 -~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd--------------------~~eaWnNls~ayi~~~~k~ra~~~l~E 578 (777)
T KOG1128|consen 520 -GTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD--------------------NAEAWNNLSTAYIRLKKKKRAFRKLKE 578 (777)
T ss_pred -hHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC--------------------chhhhhhhhHHHHHHhhhHHHHHHHHH
Confidence 67777777767777777777777777777774 335677777777777777777777777
Q ss_pred HHhccCCchHHHHHHHHHHHHhchhhhhhhcccC
Q 007648 541 ILDLRIATPQIIINYALLLEVWTLLHVFLLHVPF 574 (594)
Q Consensus 541 al~~~P~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 574 (594)
|++.+-.+..+|.||..+....|.+++|++.|+-
T Consensus 579 AlKcn~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 579 ALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HhhcCCCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 7777766777777777777777777777665554
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.92 E-value=2.8e-08 Score=91.42 Aligned_cols=123 Identities=18% Similarity=0.258 Sum_probs=114.2
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhc
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 501 (594)
...+ ..++..+...|+-+.+..+..++.-.+|+++ .+...+|....+.|++..|...+.++....|+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~----~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~-------- 132 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDR----ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT-------- 132 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccH----HHHHHHHHHHHHhcchHHHHHHHHHHhccCCC--------
Confidence 4566 8888888889999999999999999999998 77777888889999999999999999999995
Q ss_pred cCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhh
Q 007648 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFL 569 (594)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~ 569 (594)
|...|+..+-.+.+.|+++.|+.-|.++++++|++|.+..|++..+.-+|+++.|.
T Consensus 133 ------------d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~ 188 (257)
T COG5010 133 ------------DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAE 188 (257)
T ss_pred ------------ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHH
Confidence 78999999999999999999999999999999999999999999999999999985
No 123
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=2.8e-05 Score=79.41 Aligned_cols=434 Identities=12% Similarity=0.068 Sum_probs=222.7
Q ss_pred CCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHH
Q 007648 79 ITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETS 158 (594)
Q Consensus 79 ~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a 158 (594)
...++|++|.....+.+...|+++....--.-+.++.++++.|..+.+.-..+.-.+ ...+-.+|+ +.++|.. ++|
T Consensus 23 ~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc--~Yrlnk~-Dea 98 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYC--EYRLNKL-DEA 98 (652)
T ss_pred ccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHH--HHHcccH-HHH
Confidence 567999999999999999999999988877778888999999986554322111111 011223333 3467777 999
Q ss_pred HHHHHHHHhhCCCCH-HHHHHHHHhcccHHHHHHHHHHhhcC--cccccccccchHHHHHHHHHHHhhcccccccCcHHH
Q 007648 159 LRVYRRYLKYDPSHI-EDFIEFLVKSKLWQEAAERLASVLND--DQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDA 235 (594)
Q Consensus 159 ~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 235 (594)
.+.++ .+...+... +..++.+.+.++|+++..+|+.++.+ +++. .+.-..+ +..-+.. ..+
T Consensus 99 lk~~~-~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d-------~~~r~nl---~a~~a~l-----~~~ 162 (652)
T KOG2376|consen 99 LKTLK-GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD-------EERRANL---LAVAAAL-----QVQ 162 (652)
T ss_pred HHHHh-cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH-------HHHHHHH---HHHHHhh-----hHH
Confidence 99998 333333322 35678889999999999999999831 1110 0000000 0000000 000
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc-------ccc-----h--HHHHHHHHHHHHHHHH
Q 007648 236 IIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVT-------VRD-----F--SVIFDSYSQFEEIMVS 301 (594)
Q Consensus 236 ~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~--~~l~~~~~~~e~~~~~ 301 (594)
..+.+...|++..++.++.|-.++..|++.+|+++++.++...-. ..+ . ..+=.+|+......+.
T Consensus 163 -~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 -LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred -HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 112222334434678899999999999999999999999654311 100 0 1111112111111000
Q ss_pred -------HHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhh
Q 007648 302 -------AKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELAN 374 (594)
Q Consensus 302 -------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (594)
..+.....+.+.. .+. .+ .+..+. .+....+ ++. +..++..-. .++
T Consensus 242 ea~~iy~~~i~~~~~D~~~~------------Av~--~N-NLva~~---~d~~~~d--~~~---l~~k~~~~~----~l~ 294 (652)
T KOG2376|consen 242 EASSIYVDIIKRNPADEPSL------------AVA--VN-NLVALS---KDQNYFD--GDL---LKSKKSQVF----KLA 294 (652)
T ss_pred HHHHHHHHHHHhcCCCchHH------------HHH--hc-chhhhc---cccccCc--hHH---HHHHHHHHH----HhH
Confidence 0111111100000 000 00 000000 0000000 000 000000000 000
Q ss_pred hhhhccCC-CCh-HHHH--HHHHHhcCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007648 375 SVLLRQNP-HNV-EQWH--RRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAV 450 (594)
Q Consensus 375 ~~~l~~~p-~~~-~~~~--~~~~~~~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal 450 (594)
+..+..-- ... .+.. .+..++.+.-+ ++.+-... .|++... ....+.+.-+.- .+......|..++...-
T Consensus 295 ~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~---q~r~~~a~-lp~~~p~-~~~~~ll~~~t~-~~~~~~~ka~e~L~~~~ 368 (652)
T KOG2376|consen 295 EFLLSKLSKKQKQAIYRNNALLALFTNKMD---QVRELSAS-LPGMSPE-SLFPILLQEATK-VREKKHKKAIELLLQFA 368 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHh-CCccCch-HHHHHHHHHHHH-HHHHHHhhhHHHHHHHh
Confidence 00000000 000 0111 11112223333 33333332 3543211 112222211111 12226889999999999
Q ss_pred hccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHH--------HHhcC--CchhH------hhhhh-ccCChhhhH---H
Q 007648 451 QVNYKTVDHLASIWCEWAEMELRHKNFKGALELMR--------RATAE--PSVEV------RRRVA-ADGNEPVQM---K 510 (594)
Q Consensus 451 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~--------~al~~--~p~~~------~~~~~-~~~~~~~~~---~ 510 (594)
..+|++. ..+.+..+++...+|+++.|.+++. ...+. .|... +..++ .+++.+... +
T Consensus 369 ~~~p~~s---~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~ 445 (652)
T KOG2376|consen 369 DGHPEKS---KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIK 445 (652)
T ss_pred ccCCchh---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHH
Confidence 9999983 1566777788889999999999999 33322 23211 11222 112221111 1
Q ss_pred hh--------ccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhhh
Q 007648 511 LH--------KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFLL 570 (594)
Q Consensus 511 ~~--------~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~~ 570 (594)
-+ .-..+|-..+.|+.+.|+-++|.+.++..++.+|++.++...+.-.|.. =+.+.|..
T Consensus 446 ~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~-~d~eka~~ 512 (652)
T KOG2376|consen 446 WWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYAR-LDPEKAES 512 (652)
T ss_pred HHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHh-cCHHHHHH
Confidence 11 1123466668899999999999999999999999999999999888864 44555543
No 124
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.89 E-value=2.6e-05 Score=76.14 Aligned_cols=286 Identities=12% Similarity=0.099 Sum_probs=177.1
Q ss_pred CCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHH
Q 007648 79 ITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETS 158 (594)
Q Consensus 79 ~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a 158 (594)
..+|++.+|.+...++-+..+...-.+..-++.--..|+.+.+-..+.++-+.-|+++ -.....-..+....|++ +.|
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~-l~v~ltrarlll~~~d~-~aA 172 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT-LAVELTRARLLLNRRDY-PAA 172 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch-HHHHHHHHHHHHhCCCc-hhH
Confidence 4568899999999988887777767777777777888999999999999888755432 22333344555567777 888
Q ss_pred HHHHHHHHhhCCCCHHHH---HHHHHhcccHHHHHHHHHHhhcCcccccc-cccchHHHHHHHHHHHhhcccccccCcHH
Q 007648 159 LRVYRRYLKYDPSHIEDF---IEFLVKSKLWQEAAERLASVLNDDQFYSI-KGKTKHRLWLELCDLLTTHATEISGLNVD 234 (594)
Q Consensus 159 ~~~~~~~l~~~p~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 234 (594)
+....++++..|.+++.+ .++|...|+++....++.++.+..-+... ......+.|..+.+-...... .+
T Consensus 173 ~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~------~~ 246 (400)
T COG3071 173 RENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG------SE 246 (400)
T ss_pred HHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc------ch
Confidence 999999999999988732 47888899999988888777631111000 000012334433332221111 11
Q ss_pred HHHHHHHhhccc---hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 007648 235 AIIRGGIRKFTD---EVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSV 311 (594)
Q Consensus 235 ~~~~~~~~~~p~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~ 311 (594)
. +...-+..|. +.+.+-..++..+++.|+.+.|.++.+++++..-+.. +...+.. +....
T Consensus 247 g-L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~------------l~~~d 309 (400)
T COG3071 247 G-LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPR------------LRPGD 309 (400)
T ss_pred H-HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhh------------cCCCC
Confidence 1 1111111221 1256889999999999999999999999998753332 1111100 00000
Q ss_pred cccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHH
Q 007648 312 EEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRR 391 (594)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~ 391 (594)
... -+...++ .++..|+++.++..+
T Consensus 310 ----------------------------------------~~~---l~k~~e~------------~l~~h~~~p~L~~tL 334 (400)
T COG3071 310 ----------------------------------------PEP---LIKAAEK------------WLKQHPEDPLLLSTL 334 (400)
T ss_pred ----------------------------------------chH---HHHHHHH------------HHHhCCCChhHHHHH
Confidence 000 1122233 366677777777777
Q ss_pred HHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007648 392 VKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQ 451 (594)
Q Consensus 392 ~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~ 451 (594)
|.++. +...+|...|+.|++. .| ...-|..+|..+.+.|+..+|-++++.++.
T Consensus 335 G~L~~k~~~w~kA~~~leaAl~~-~~------s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 335 GRLALKNKLWGKASEALEAALKL-RP------SASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhc-CC------ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 77764 4577777777777764 22 345566667777777777777777777764
No 125
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=1.6e-07 Score=85.74 Aligned_cols=137 Identities=12% Similarity=0.034 Sum_probs=79.8
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCC
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~ 476 (594)
++.+-|..++++--...|. +..+-...|.+++..|+++.|+++|++.++-+|.+. .++-+...+...+|+
T Consensus 66 ~~~~lAq~C~~~L~~~fp~------S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~----v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 66 GRDDLAQKCINQLRDRFPG------SKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDT----VIRKRKLAILKAQGK 135 (289)
T ss_pred cchHHHHHHHHHHHHhCCC------ChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchh----HHHHHHHHHHHHcCC
Confidence 4455555566554444422 334445555556666666666666666666666665 444455445445555
Q ss_pred hHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHH
Q 007648 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556 (594)
Q Consensus 477 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~ 556 (594)
.-+|++-+..-++..|+ |...|..++++|...|+|++|.-+||..+-.+|.+|..+-.|+
T Consensus 136 ~l~aIk~ln~YL~~F~~--------------------D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rla 195 (289)
T KOG3060|consen 136 NLEAIKELNEYLDKFMN--------------------DQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLA 195 (289)
T ss_pred cHHHHHHHHHHHHHhcC--------------------cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 55666666655555553 4566666666666666666666666666666666666666666
Q ss_pred HHHHHhc
Q 007648 557 LLLEVWT 563 (594)
Q Consensus 557 ~~~~~~g 563 (594)
+++.-.|
T Consensus 196 e~~Yt~g 202 (289)
T KOG3060|consen 196 EVLYTQG 202 (289)
T ss_pred HHHHHHh
Confidence 6655443
No 126
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.84 E-value=2.8e-08 Score=85.51 Aligned_cols=91 Identities=16% Similarity=0.140 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHH
Q 007648 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (594)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (594)
+..+.++..+...|++++|.++|+-++..+|. +...|+.++.+...+|++++|+..|.+|
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~--------------------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A 95 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW--------------------SFDYWFRLGECCQAQKHWGEAIYAYGRA 95 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--------------------cHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 67788898889999999999999999999995 6799999999999999999999999999
Q ss_pred HhccCCchHHHHHHHHHHHHhchhhhhhhcc
Q 007648 542 LDLRIATPQIIINYALLLEVWTLLHVFLLHV 572 (594)
Q Consensus 542 l~~~P~~~~~~~~~~~~~~~~g~~~~a~~~~ 572 (594)
+.++|++|....+.|.++...|+.+.|++..
T Consensus 96 ~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF 126 (157)
T PRK15363 96 AQIKIDAPQAPWAAAECYLACDNVCYAIKAL 126 (157)
T ss_pred HhcCCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999987543
No 127
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.82 E-value=6.5e-08 Score=81.69 Aligned_cols=112 Identities=13% Similarity=0.038 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccC
Q 007648 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADG 503 (594)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 503 (594)
+.++..|..+...|++++|...|++++...|+++.. ...++.+|.++.+.|++++|...|++++...|+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-------- 73 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYA-PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP-------- 73 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc-HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC--------
Confidence 567888999999999999999999999998887421 15788899999999999999999999999988511
Q ss_pred ChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHH
Q 007648 504 NEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIII 553 (594)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~ 553 (594)
..+.++...+.++...|++++|.+.++++++..|+++.+..
T Consensus 74 ---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 74 ---------KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred ---------cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 12467888899999999999999999999999999986543
No 128
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.2e-07 Score=90.31 Aligned_cols=269 Identities=14% Similarity=0.035 Sum_probs=170.6
Q ss_pred chhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHH
Q 007648 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLR 160 (594)
Q Consensus 81 ~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~ 160 (594)
..+|..|...|..|+..+|+++..|..-+..++..++++.|..-.+..+++.|... .-..........++.. .+|..
T Consensus 62 ~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~--k~~~r~~~c~~a~~~~-i~A~~ 138 (486)
T KOG0550|consen 62 QKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS--KGQLREGQCHLALSDL-IEAEE 138 (486)
T ss_pred HhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcc--ccccchhhhhhhhHHH-HHHHH
Confidence 46788999999999999999999999999999999999999988888888888641 1111111111111111 22222
Q ss_pred HHH------------HHHhhCCCCHH-------HH--HHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHH
Q 007648 161 VYR------------RYLKYDPSHIE-------DF--IEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCD 219 (594)
Q Consensus 161 ~~~------------~~l~~~p~~~~-------~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 219 (594)
.|+ +.-++.|.+.. .+ .+++.-.+++++|.+.--.++
T Consensus 139 ~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~il---------------------- 196 (486)
T KOG0550|consen 139 KLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDIL---------------------- 196 (486)
T ss_pred HhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHH----------------------
Confidence 222 11112222210 00 123333444444443321111
Q ss_pred HHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHH
Q 007648 220 LLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIM 299 (594)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~ 299 (594)
+..+.+ .+....-+..+...++.+.|...|+++|...|++.+....+..--.+
T Consensus 197 ----------------------kld~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~l---- 249 (486)
T KOG0550|consen 197 ----------------------KLDATN-AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKL---- 249 (486)
T ss_pred ----------------------hcccch-hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHH----
Confidence 111111 23344445555556777888888888888887765321111111000
Q ss_pred HHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhc
Q 007648 300 VSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLR 379 (594)
Q Consensus 300 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 379 (594)
T Consensus 250 -------------------------------------------------------------------------------- 249 (486)
T KOG0550|consen 250 -------------------------------------------------------------------------------- 249 (486)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCChHHHHHHHHH-h-cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh
Q 007648 380 QNPHNVEQWHRRVKI-F-EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTV 457 (594)
Q Consensus 380 ~~p~~~~~~~~~~~~-~-~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~ 457 (594)
+.|-..|.- + .|++..|.++|..||.. +|.+ +..++.+|.+.+....+.|+..+|+...+.|++++|.-.
T Consensus 250 ------e~~k~~gN~~fk~G~y~~A~E~Yteal~i-dP~n-~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syi 321 (486)
T KOG0550|consen 250 ------EVKKERGNDAFKNGNYRKAYECYTEALNI-DPSN-KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYI 321 (486)
T ss_pred ------HHHHhhhhhHhhccchhHHHHHHHHhhcC-Cccc-cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHH
Confidence 011111110 1 27888899999999985 5543 223678889999999999999999999999999999888
Q ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCch
Q 007648 458 DHLASIWCEWAEMELRHKNFKGALELMRRATAEPSV 493 (594)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 493 (594)
..++.-+.+.+-.+++++|.+-|++|++...+
T Consensus 322 ----kall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 322 ----KALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 88899999998999999999999999988664
No 129
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.79 E-value=3.8e-07 Score=94.79 Aligned_cols=117 Identities=16% Similarity=0.302 Sum_probs=62.7
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCC
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~ 476 (594)
++++++...+++.+.. .|. ....|+.+|-+..+.++.+.|.+.|.+++..+|++. ..|.+++..+++.|+
T Consensus 499 ~~fs~~~~hle~sl~~-npl-----q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~----eaWnNls~ayi~~~~ 568 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEI-NPL-----QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNA----EAWNNLSTAYIRLKK 568 (777)
T ss_pred hhHHHHHHHHHHHhhc-Ccc-----chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCch----hhhhhhhHHHHHHhh
Confidence 3455555555555553 221 345555555555555555555555555555555555 555555555555555
Q ss_pred hHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHh
Q 007648 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543 (594)
Q Consensus 477 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 543 (594)
..+|...+++|++.+- ++..+|.+|.-+-...|.+++|.+.|.+.+.
T Consensus 569 k~ra~~~l~EAlKcn~--------------------~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 569 KKRAFRKLKEALKCNY--------------------QHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hHHHHHHHHHHhhcCC--------------------CCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 5555555555555543 1345555555555555555555555555544
No 130
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.77 E-value=9.2e-08 Score=76.42 Aligned_cols=99 Identities=18% Similarity=0.223 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCC
Q 007648 425 LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGN 504 (594)
Q Consensus 425 ~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 504 (594)
+|+.+|..+...|++++|+.+++++++..|.++ .+|..++.++...|++++|.+.+++++...|.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----------- 66 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA----DAYYNLAAAYYKLGKYEEALEDYEKALELDPD----------- 66 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-----------
Confidence 467778888888999999999999999888887 78888888888889999999999999988884
Q ss_pred hhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCC
Q 007648 505 EPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA 547 (594)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 547 (594)
++..|..++.++...|++++|...+++++...|+
T Consensus 67 ---------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 67 ---------NAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred ---------chhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 4467788888888889999999999999888774
No 131
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.7e-07 Score=88.67 Aligned_cols=114 Identities=15% Similarity=0.038 Sum_probs=66.0
Q ss_pred hHHHHhhCCCCHHHHHHHHHHHH-cCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q 007648 16 YEEELLRNPFSLKLWWRYLVAKR-EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERA 94 (594)
Q Consensus 16 ~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 94 (594)
+|..|..||.|.+.|..+.+..+ .+++..|...|.+|++..|+++++|..|++...-. .......++..+|++|
T Consensus 145 Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~-----a~~~~ta~a~~ll~~a 219 (287)
T COG4235 145 LETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQ-----AGQQMTAKARALLRQA 219 (287)
T ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----cCCcccHHHHHHHHHH
Confidence 45556666666666666666443 56666666666666666666666666665554322 1222335556666666
Q ss_pred HHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 007648 95 LVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPV 134 (594)
Q Consensus 95 l~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~ 134 (594)
++.+|.++.....++.-+..+|++.+|...++..+...|.
T Consensus 220 l~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 220 LALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 6666666666666666666666666666666666665554
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.73 E-value=6.4e-07 Score=89.41 Aligned_cols=149 Identities=12% Similarity=0.047 Sum_probs=122.8
Q ss_pred CCCHHHHHHHHH-HHHcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCh
Q 007648 24 PFSLKLWWRYLV-AKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMP 102 (594)
Q Consensus 24 P~~~~~w~~~~~-~~~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~ 102 (594)
|.-...|.-.+. ....+.++.|+..+...++..|+++-+|....+.. +..++.++|.+.+++++..+|.++
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~--------~~~nk~~~A~e~~~kal~l~P~~~ 374 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDIL--------LEANKAKEAIERLKKALALDPNSP 374 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHH--------HHcCChHHHHHHHHHHHhcCCCcc
Confidence 666677766555 44578999999999999999999998888776665 445888999999999999999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHHHHHHHHh
Q 007648 103 RIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVK 182 (594)
Q Consensus 103 ~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~ 182 (594)
-+|+.|++.+.+.|++++|..++++.+..+|.+ +..|..+++-+..+|+. .++... +++.+..
T Consensus 375 ~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d--p~~w~~LAqay~~~g~~-~~a~~A--------------~AE~~~~ 437 (484)
T COG4783 375 LLQLNLAQALLKGGKPQEAIRILNRYLFNDPED--PNGWDLLAQAYAELGNR-AEALLA--------------RAEGYAL 437 (484)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC--chHHHHHHHHHHHhCch-HHHHHH--------------HHHHHHh
Confidence 999999999999999999999999999999986 78999999999888887 555543 4455666
Q ss_pred cccHHHHHHHHHHhh
Q 007648 183 SKLWQEAAERLASVL 197 (594)
Q Consensus 183 ~~~~~~a~~~~~~~~ 197 (594)
.|+++.|+..+..+.
T Consensus 438 ~G~~~~A~~~l~~A~ 452 (484)
T COG4783 438 AGRLEQAIIFLMRAS 452 (484)
T ss_pred CCCHHHHHHHHHHHH
Confidence 788888888777665
No 133
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=1.5e-07 Score=88.39 Aligned_cols=90 Identities=13% Similarity=0.143 Sum_probs=55.5
Q ss_pred chhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHH
Q 007648 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLR 160 (594)
Q Consensus 81 ~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~ 160 (594)
.++|++|+..|.+|++++|.++-++..-+..+.+.|.++.|.+-+++||+.+|.. .+.|..++..+..+|++ +.|++
T Consensus 94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y--skay~RLG~A~~~~gk~-~~A~~ 170 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY--SKAYGRLGLAYLALGKY-EEAIE 170 (304)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH--HHHHHHHHHHHHccCcH-HHHHH
Confidence 3556666666666666666666666666666666666666666666666666642 45555555555556666 66666
Q ss_pred HHHHHHhhCCCCH
Q 007648 161 VYRRYLKYDPSHI 173 (594)
Q Consensus 161 ~~~~~l~~~p~~~ 173 (594)
.|+++|+++|++.
T Consensus 171 aykKaLeldP~Ne 183 (304)
T KOG0553|consen 171 AYKKALELDPDNE 183 (304)
T ss_pred HHHhhhccCCCcH
Confidence 6666666666665
No 134
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.68 E-value=4.2e-08 Score=73.93 Aligned_cols=67 Identities=15% Similarity=0.286 Sum_probs=62.7
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhcCCc
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK-NFKGALELMRRATAEPS 492 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p 492 (594)
.+..|..+|.++...|++++|+..|++|++.+|+++ .+|+.+|.++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~----~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA----EAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH----HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 367899999999999999999999999999999999 99999999999999 79999999999999887
No 135
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.68 E-value=8.3e-08 Score=71.34 Aligned_cols=64 Identities=19% Similarity=0.307 Sum_probs=57.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q 007648 466 EWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR 545 (594)
Q Consensus 466 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 545 (594)
.+|..+++.|++++|+..|+++++..|+ ++.+|..++.++...|++++|+..|+++++.+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~--------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD--------------------NPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT--------------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC--------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4677788999999999999999999995 67999999999999999999999999999999
Q ss_pred CCch
Q 007648 546 IATP 549 (594)
Q Consensus 546 P~~~ 549 (594)
|++|
T Consensus 62 P~~p 65 (65)
T PF13432_consen 62 PDNP 65 (65)
T ss_dssp TT-H
T ss_pred cCCC
Confidence 9987
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.65 E-value=4.9e-07 Score=91.32 Aligned_cols=122 Identities=13% Similarity=0.051 Sum_probs=104.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhh
Q 007648 428 AFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPV 507 (594)
Q Consensus 428 ~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 507 (594)
.+..+....++++.|+.++++..+.+|+ ++..++.++...++-.+|.+++.++++..|.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe-------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-------------- 232 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE-------VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-------------- 232 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc-------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC--------------
Confidence 3344555678899999999999988874 3445677777778888999999999999994
Q ss_pred hHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhh---hcccCcc
Q 007648 508 QMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFL---LHVPFTF 576 (594)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~---~~~~~~~ 576 (594)
+..++...++++.+.|+++.|.++.++|+.+.|++-..|..++.+|.+.|++++|| +..|+..
T Consensus 233 ------d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 233 ------DSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 67888899999999999999999999999999999999999999999999999997 6667653
No 137
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.64 E-value=8.8e-07 Score=80.31 Aligned_cols=107 Identities=10% Similarity=0.067 Sum_probs=85.7
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhc
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 501 (594)
....++.+|..+...|++++|...|+++++..|+.+.. ..+|..+|.++.+.|++++|+..++++++..|+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------- 104 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDR-SYILYNMGIIYASNGEHDKALEYYHQALELNPK-------- 104 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--------
Confidence 56778889999999999999999999999887764321 157889999999999999999999999999985
Q ss_pred cCChhhhHHhhccHhhHHHHHHHHHHhCC--------------hHHHHHHHHHHHhccCCch
Q 007648 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGN--------------LESTRAVYERILDLRIATP 549 (594)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------------~~~A~~~~~~al~~~P~~~ 549 (594)
++..+..++.++...|+ +++|.++++++++.+|++.
T Consensus 105 ------------~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 105 ------------QPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred ------------cHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 33455555666666555 6788888899988898874
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.63 E-value=1.7e-06 Score=76.00 Aligned_cols=121 Identities=16% Similarity=0.176 Sum_probs=95.9
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCC
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~ 476 (594)
++...+...++.-+...|. .. ....+.+.+|..+...|++++|...|++++...|+.. .-..+.+.++.+++..|+
T Consensus 25 ~~~~~~~~~~~~l~~~~~~-s~--ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~-l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKDYPS-SP--YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE-LKPLARLRLARILLQQGQ 100 (145)
T ss_pred CCHHHHHHHHHHHHHHCCC-Ch--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH-HHHHHHHHHHHHHHHcCC
Confidence 6677777888887775333 21 1357788899999999999999999999999775552 223578889999999999
Q ss_pred hHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHH
Q 007648 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERIL 542 (594)
Q Consensus 477 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 542 (594)
+++|...++.. ...+ -.+..+...|+++.+.|++++|+..|++||
T Consensus 101 ~d~Al~~L~~~-~~~~--------------------~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 101 YDEALATLQQI-PDEA--------------------FKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHhc-cCcc--------------------hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999999763 2222 135678889999999999999999999986
No 139
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.63 E-value=8e-07 Score=93.95 Aligned_cols=142 Identities=14% Similarity=0.044 Sum_probs=112.1
Q ss_pred hccCCCChHHHHHHHHHhc-------CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhc--------CCHHHH
Q 007648 378 LRQNPHNVEQWHRRVKIFE-------GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETY--------KDIANA 442 (594)
Q Consensus 378 l~~~p~~~~~~~~~~~~~~-------~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~--------~~~~~A 442 (594)
...-|.|.++|-.+.+... ++..+|+.+|++|++. +|+ ++.+|..++.++... .+...+
T Consensus 330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l-dP~-----~a~a~A~la~~~~~~~~~~~~~~~~l~~a 403 (517)
T PRK10153 330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS-EPD-----FTYAQAEKALADIVRHSQQPLDEKQLAAL 403 (517)
T ss_pred hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-CCC-----cHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 4556788888876544431 2477999999999996 664 566666666555422 234567
Q ss_pred HHHHHHHHhc--cCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHH
Q 007648 443 RVIFDKAVQV--NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTF 520 (594)
Q Consensus 443 ~~~~~kal~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (594)
....++++.. +|.++ .++..++......|++++|...+++|+.++|+ ...|..
T Consensus 404 ~~~~~~a~al~~~~~~~----~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps---------------------~~a~~~ 458 (517)
T PRK10153 404 STELDNIVALPELNVLP----RIYEILAVQALVKGKTDEAYQAINKAIDLEMS---------------------WLNYVL 458 (517)
T ss_pred HHHHHHhhhcccCcCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---------------------HHHHHH
Confidence 7777787764 67777 77888888877889999999999999999993 578899
Q ss_pred HHHHHHHhCChHHHHHHHHHHHhccCCchH
Q 007648 521 YVDLEESLGNLESTRAVYERILDLRIATPQ 550 (594)
Q Consensus 521 ~~~~~~~~g~~~~A~~~~~~al~~~P~~~~ 550 (594)
+|.++...|+.++|...|++|+.++|.+|.
T Consensus 459 lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 459 LGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 999999999999999999999999999995
No 140
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.62 E-value=9.6e-08 Score=70.99 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCch
Q 007648 427 VAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSV 493 (594)
Q Consensus 427 ~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 493 (594)
+.+|..+...|++++|+.+|+++++..|+++ .+|+.+|.++...|++++|+..|+++++..|+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~----~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNP----EAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHH----HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3567888899999999999999999999999 99999999999999999999999999999996
No 141
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.62 E-value=3.3e-06 Score=84.39 Aligned_cols=173 Identities=15% Similarity=0.172 Sum_probs=125.8
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhccC----CCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHH
Q 007648 46 FVIYERALKALPGSYKLWHAYLIERLSIVKN----LPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKA 121 (594)
Q Consensus 46 ~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~----~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A 121 (594)
..-|++.++.+|.+++.|+.++.+..+.... ......-.+.-..+|++||+.+|+++.+|..|++...+..+.+..
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3578999999999999999999986543211 001123356778899999999999999999999999999899999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHH-cC--CchHHHHHHHHHHHhhCCCCHHHHHHHHHhcccHHHHHHHHHHhhc
Q 007648 122 RRTFDRALCALPVTQHDRIWEIYLRFVEQ-EG--IPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLN 198 (594)
Q Consensus 122 ~~~~~ral~~~p~~~~~~~w~~~~~~~~~-~~--~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 198 (594)
.+.+++++..+|++ ..+|..|+.+.+. .+ .. +.++.+|.+++........ +. ..
T Consensus 85 ~~~we~~l~~~~~~--~~LW~~yL~~~q~~~~~f~v-~~~~~~y~~~l~~L~~~~~---------~~----------~~- 141 (321)
T PF08424_consen 85 AKKWEELLFKNPGS--PELWREYLDFRQSNFASFTV-SDVRDVYEKCLRALSRRRS---------GR----------MT- 141 (321)
T ss_pred HHHHHHHHHHCCCC--hHHHHHHHHHHHHHhccCcH-HHHHHHHHHHHHHHHHhhc---------cc----------cc-
Confidence 99999999999986 8999999999865 22 23 6778887777644221110 00 00
Q ss_pred CcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 007648 199 DDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMT 278 (594)
Q Consensus 199 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (594)
.++.. ...+ .....+.+.++.++...|-.+.|..+++-.+..
T Consensus 142 ------------------------~~~~~---~~~e-----------~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 142 ------------------------SHPDL---PELE-----------EFMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred ------------------------cccch---hhHH-----------HHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 00000 0000 011457888899999999999999999999876
Q ss_pred h
Q 007648 279 V 279 (594)
Q Consensus 279 ~ 279 (594)
+
T Consensus 184 n 184 (321)
T PF08424_consen 184 N 184 (321)
T ss_pred H
Confidence 4
No 142
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.58 E-value=1.4e-07 Score=88.08 Aligned_cols=128 Identities=20% Similarity=0.260 Sum_probs=108.2
Q ss_pred chHhHHHHhhCCCCHHHHHHHHHHHHc-----------------------CChhHHHHHHHHHHHhCCCChHHHHHHHHH
Q 007648 13 DLLYEEELLRNPFSLKLWWRYLVAKRE-----------------------APFKKRFVIYERALKALPGSYKLWHAYLIE 69 (594)
Q Consensus 13 ~~~~e~~l~~~P~~~~~w~~~~~~~~~-----------------------~~~~~a~~~~e~al~~~P~s~~lW~~~~~~ 69 (594)
+.-||..|.+.......+++||+++-. +-+.+..-.|-|+...+|.++.+|..|+.+
T Consensus 37 Rr~fE~rL~rr~~klnDf~~YI~yE~nleklRaKR~Kr~~v~~K~s~sD~sipqk~~f~~~R~tnkff~D~k~w~~y~~Y 116 (435)
T COG5191 37 RRKFELRLQRREKKLNDFMRYIKYECNLEKLRAKRVKRKKVGKKASFSDMSIPQKKIFELYRSTNKFFNDPKIWSQYAAY 116 (435)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHhcccccchhccccceeeEeeehhhhcCCCCcHHHHHHHHH
Confidence 567899999999999999999998841 112344556778888899999999999999
Q ss_pred HHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 007648 70 RLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTS-QKFITKARRTFDRALCALPVTQHDRIWEIYLRFV 148 (594)
Q Consensus 70 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~-~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~ 148 (594)
.++. +-|.....+|..++..+|.++++|+.-+.++.. .++++.+|.+|.++++.+|.+ +.+|..|..++
T Consensus 117 ~~k~--------k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~--p~iw~eyfr~E 186 (435)
T COG5191 117 VIKK--------KMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS--PRIWIEYFRME 186 (435)
T ss_pred HHHH--------HHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC--chHHHHHHHHH
Confidence 8554 678889999999999999999999987777754 689999999999999999986 89999999988
Q ss_pred HH
Q 007648 149 EQ 150 (594)
Q Consensus 149 ~~ 150 (594)
..
T Consensus 187 l~ 188 (435)
T COG5191 187 LM 188 (435)
T ss_pred HH
Confidence 53
No 143
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.57 E-value=3.9e-06 Score=88.81 Aligned_cols=155 Identities=12% Similarity=0.112 Sum_probs=122.9
Q ss_pred HhHHHHhhCCCCHHHHHHHHHHHH---c---CChhHHHHHHHHHHHhCCCChHHHHHHHHH-HHHhccCCCCCchhHHHH
Q 007648 15 LYEEELLRNPFSLKLWWRYLVAKR---E---APFKKRFVIYERALKALPGSYKLWHAYLIE-RLSIVKNLPITHPEYETL 87 (594)
Q Consensus 15 ~~e~~l~~~P~~~~~w~~~~~~~~---~---~~~~~a~~~~e~al~~~P~s~~lW~~~~~~-~~~~~~~~~~~~~~~~~A 87 (594)
..++....-|.|.++|-.|++... . ++..+|+.+|++|++.+|.....|-..+-. ..... ......++...+
T Consensus 325 e~~~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~-~~~~~~~~l~~a 403 (517)
T PRK10153 325 MQERLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHS-QQPLDEKQLAAL 403 (517)
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHh-cCCccHHHHHHH
Confidence 344555677899999999999643 2 447899999999999999998887764321 11110 000123456788
Q ss_pred HHHHHHHHHh--cCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 007648 88 NNTFERALVT--MHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRY 165 (594)
Q Consensus 88 ~~~~~~al~~--~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~ 165 (594)
....++++.. +|.++.++..++-.....|++++|...+++|+.+.|. ...|..++.+....|+. ++|...|+++
T Consensus 404 ~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps---~~a~~~lG~~~~~~G~~-~eA~~~~~~A 479 (517)
T PRK10153 404 STELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS---WLNYVLLGKVYELKGDN-RLAADAYSTA 479 (517)
T ss_pred HHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcCCH-HHHHHHHHHH
Confidence 8888887775 7888899999999988899999999999999999994 45777888888899999 9999999999
Q ss_pred HhhCCCCHH
Q 007648 166 LKYDPSHIE 174 (594)
Q Consensus 166 l~~~p~~~~ 174 (594)
+.++|.++.
T Consensus 480 ~~L~P~~pt 488 (517)
T PRK10153 480 FNLRPGENT 488 (517)
T ss_pred HhcCCCCch
Confidence 999999885
No 144
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.57 E-value=1.6e-07 Score=70.82 Aligned_cols=65 Identities=15% Similarity=0.256 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhC-ChHHHHHHHHH
Q 007648 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLG-NLESTRAVYER 540 (594)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~ 540 (594)
.+|...|..+...|++++|+..|+++++.+|+ ++.+|..++.++...| ++++|++.+++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~--------------------~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN--------------------NAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT--------------------HHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------------------CHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 77888888888888888888888888888885 5678888888888888 68888888888
Q ss_pred HHhccC
Q 007648 541 ILDLRI 546 (594)
Q Consensus 541 al~~~P 546 (594)
+++++|
T Consensus 64 al~l~P 69 (69)
T PF13414_consen 64 ALKLDP 69 (69)
T ss_dssp HHHHST
T ss_pred HHHcCc
Confidence 888887
No 145
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.56 E-value=1.4e-06 Score=88.50 Aligned_cols=90 Identities=10% Similarity=0.138 Sum_probs=66.3
Q ss_pred HcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccc
Q 007648 38 REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKF 117 (594)
Q Consensus 38 ~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~ 117 (594)
..++++.|...|+++++..|.++.+|...+... ...|+++.|...+++|+.++|.++.+|..++.++...|+
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~--------~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPNNAELYADRAQAN--------IKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 467777777777777777777777776666554 334777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 007648 118 ITKARRTFDRALCALPVT 135 (594)
Q Consensus 118 ~~~A~~~~~ral~~~p~~ 135 (594)
++.|...|++++++.|.+
T Consensus 86 ~~eA~~~~~~al~l~P~~ 103 (356)
T PLN03088 86 YQTAKAALEKGASLAPGD 103 (356)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 777777777777777765
No 146
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.56 E-value=1.7e-06 Score=78.06 Aligned_cols=107 Identities=10% Similarity=0.036 Sum_probs=79.5
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhc
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 501 (594)
....|+.+|.++...|+++.|...|++|+...|+.. ....+|..+|.++...|++++|+..+++++...|..
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~-~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~------- 105 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY-DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL------- 105 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-------
Confidence 467788888888889999999999999998876543 112578888998889999999999999999998852
Q ss_pred cCChhhhHHhhccHhhHHHHHHHHH-------HhCChH-------HHHHHHHHHHhccCCch
Q 007648 502 DGNEPVQMKLHKSLRLWTFYVDLEE-------SLGNLE-------STRAVYERILDLRIATP 549 (594)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~-------~A~~~~~~al~~~P~~~ 549 (594)
...+...+.++. ..|+++ +|..+|++++..+|++.
T Consensus 106 -------------~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 106 -------------PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred -------------HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 122333333333 566655 77788888888888654
No 147
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=0.00039 Score=66.81 Aligned_cols=382 Identities=10% Similarity=0.041 Sum_probs=200.2
Q ss_pred HHHcCChhHHHHHHHHHHHhCC---CChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 007648 36 AKREAPFKKRFVIYERALKALP---GSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETL 112 (594)
Q Consensus 36 ~~~~~~~~~a~~~~e~al~~~P---~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~ 112 (594)
+..+.|+..|+.+++-.+...- ++..+|..+..+. .|+|++|...|+-+...+--+.++|+.++-+.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fh----------LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~ 101 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFH----------LGDYEEALNVYTFLMNKDDAPAELGVNLACCK 101 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHh----------hccHHHHHHHHHHHhccCCCCcccchhHHHHH
Confidence 4446778888888877775442 3678888887765 38889999999888887655668888888877
Q ss_pred HhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHHHHHHHHhcccHHHHHHH
Q 007648 113 TSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAER 192 (594)
Q Consensus 113 ~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~a~~~ 192 (594)
.-.|.+.+|..+-++| |.+ +---..+..+..++|+. ++ .-.|..-+.-..++...++......-.|++|+.+
T Consensus 102 FyLg~Y~eA~~~~~ka----~k~--pL~~RLlfhlahklndE-k~-~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdv 173 (557)
T KOG3785|consen 102 FYLGQYIEAKSIAEKA----PKT--PLCIRLLFHLAHKLNDE-KR-ILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDV 173 (557)
T ss_pred HHHHHHHHHHHHHhhC----CCC--hHHHHHHHHHHHHhCcH-HH-HHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 7788888887777664 443 11112233444455554 32 2233322221111111233332233357778887
Q ss_pred HHHhhc-CcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHH
Q 007648 193 LASVLN-DDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDI 271 (594)
Q Consensus 193 ~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~ 271 (594)
|++++. +|.+. -+-..+|..|.+..-++-+-++
T Consensus 174 YkrvL~dn~ey~----------------------------------------------alNVy~ALCyyKlDYydvsqev 207 (557)
T KOG3785|consen 174 YKRVLQDNPEYI----------------------------------------------ALNVYMALCYYKLDYYDVSQEV 207 (557)
T ss_pred HHHHHhcChhhh----------------------------------------------hhHHHHHHHHHhcchhhhHHHH
Confidence 777763 22211 1111223334445555555555
Q ss_pred HHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccc
Q 007648 272 FEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHD 351 (594)
Q Consensus 272 ~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (594)
++--|+..|++.-. .=..+...|.-. .++..
T Consensus 208 l~vYL~q~pdStiA-~NLkacn~fRl~--------ngr~a---------------------------------------- 238 (557)
T KOG3785|consen 208 LKVYLRQFPDSTIA-KNLKACNLFRLI--------NGRTA---------------------------------------- 238 (557)
T ss_pred HHHHHHhCCCcHHH-HHHHHHHHhhhh--------ccchh----------------------------------------
Confidence 55556666655420 000011111000 00000
Q ss_pred hhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHH-Hhc------CCchhHHHHHHHHHhccCCCcccCCchH
Q 007648 352 VKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVK-IFE------GNPTKQILTYTEAVRTVDPMKAVGKPHT 424 (594)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~-~~~------~~~~~a~~~y~~Ai~~~~~~~~~~~~~~ 424 (594)
.....+ +..+-+.. +..+. +.. .+-+.|++++-.-++. .++
T Consensus 239 -------e~E~k~-------------ladN~~~~---~~f~~~l~rHNLVvFrngEgALqVLP~L~~~---------IPE 286 (557)
T KOG3785|consen 239 -------EDEKKE-------------LADNIDQE---YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH---------IPE 286 (557)
T ss_pred -------HHHHHH-------------HHhccccc---chhHHHHHHcCeEEEeCCccHHHhchHHHhh---------ChH
Confidence 000000 00000000 00000 000 2344566665554443 457
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHH---HHhcCCch-----hH-
Q 007648 425 LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMR---RATAEPSV-----EV- 495 (594)
Q Consensus 425 ~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~---~al~~~p~-----~~- 495 (594)
+.++++.++.++++.++|..+.+. .+|..| .=++..|......|+--..|+.++ +-.++-.+ |.
T Consensus 287 ARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP----~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI 359 (557)
T KOG3785|consen 287 ARLNLIIYYLNQNDVQEAISLCKD---LDPTTP----YEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTI 359 (557)
T ss_pred hhhhheeeecccccHHHHHHHHhh---cCCCCh----HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc
Confidence 888999899999999999988764 578888 333444444444443322333222 22222111 10
Q ss_pred --------hhhhh--ccCCh---hhhHHhh-ccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHH-HHHHHHHH
Q 007648 496 --------RRRVA--ADGNE---PVQMKLH-KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQII-INYALLLE 560 (594)
Q Consensus 496 --------~~~~~--~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~-~~~~~~~~ 560 (594)
+-++. |+.-+ .+.+..| +|..+-..+++.....|++.+|.+.+-+.-.-...+..++ ..+++++.
T Consensus 360 pGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 360 PGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYI 439 (557)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHH
Confidence 00110 11100 0111222 5677788999999999999999999877544333344444 47899999
Q ss_pred Hhchhhhhh
Q 007648 561 VWTLLHVFL 569 (594)
Q Consensus 561 ~~g~~~~a~ 569 (594)
.++..+-|-
T Consensus 440 ~nkkP~lAW 448 (557)
T KOG3785|consen 440 RNKKPQLAW 448 (557)
T ss_pred hcCCchHHH
Confidence 888877664
No 148
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.54 E-value=1e-07 Score=89.08 Aligned_cols=104 Identities=19% Similarity=0.231 Sum_probs=89.6
Q ss_pred CCCCCCCCcchHhHHHHhhCCCCHHHHHHHHHHHH-cCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCch
Q 007648 4 SKELYPSEDDLLYEEELLRNPFSLKLWWRYLVAKR-EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHP 82 (594)
Q Consensus 4 ~~~~~~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~ 82 (594)
|+-=++...-..|.|...+.|.|...|..|+.+.. .+-+.....+|..+|+.+|.++++|...+.++.. ..+
T Consensus 84 sD~sipqk~~f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~-------~~a 156 (435)
T COG5191 84 SDMSIPQKKIFELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELF-------EIA 156 (435)
T ss_pred hhccccceeeEeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhh-------hhc
Confidence 33344445566788999999999999999999886 6788899999999999999999999987777743 347
Q ss_pred hHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 007648 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTS 114 (594)
Q Consensus 83 ~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~ 114 (594)
+++.++++|.++|+.+|++|.+|+.|..++..
T Consensus 157 ni~s~Ra~f~~glR~N~~~p~iw~eyfr~El~ 188 (435)
T COG5191 157 NIESSRAMFLKGLRMNSRSPRIWIEYFRMELM 188 (435)
T ss_pred cHHHHHHHHHhhhccCCCCchHHHHHHHHHHH
Confidence 89999999999999999999999999998864
No 149
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.7e-06 Score=80.61 Aligned_cols=120 Identities=18% Similarity=0.192 Sum_probs=97.8
Q ss_pred chhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhc-C--
Q 007648 399 PTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRH-K-- 475 (594)
Q Consensus 399 ~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~-~-- 475 (594)
.++...-.+.-+.. +|. .++-|..+|.++..+|+...|...|.+|+++.|+|+ +++..|+..+... |
T Consensus 138 ~~~l~a~Le~~L~~-nP~-----d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~----~~~~g~aeaL~~~a~~~ 207 (287)
T COG4235 138 MEALIARLETHLQQ-NPG-----DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNP----EILLGLAEALYYQAGQQ 207 (287)
T ss_pred HHHHHHHHHHHHHh-CCC-----CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhcCCc
Confidence 44455666666665 443 579999999999999999999999999999999999 9999999976442 3
Q ss_pred ChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCc
Q 007648 476 NFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT 548 (594)
Q Consensus 476 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~ 548 (594)
...+++.+|+++++.+|+ +......++.-+...|++.+|...++..+...|.+
T Consensus 208 ~ta~a~~ll~~al~~D~~--------------------~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 208 MTAKARALLRQALALDPA--------------------NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred ccHHHHHHHHHHHhcCCc--------------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 357899999999999996 34555556666667899999999999999987765
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.49 E-value=1.4e-06 Score=69.41 Aligned_cols=95 Identities=13% Similarity=0.159 Sum_probs=82.9
Q ss_pred HHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHH
Q 007648 388 WHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWC 465 (594)
Q Consensus 388 ~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~ 465 (594)
|+.++..+ .|++++|...+++++...|. ...+|..+|.++...|+++.|.+.+++++...|.++ .++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~ 72 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD------NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA----KAYY 72 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch----hHHH
Confidence 44555544 48899999999999986443 457899999999999999999999999999999998 8899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcCCc
Q 007648 466 EWAEMELRHKNFKGALELMRRATAEPS 492 (594)
Q Consensus 466 ~~~~~~~~~~~~~~A~~~~~~al~~~p 492 (594)
.++.++...|+++.|...++++++..|
T Consensus 73 ~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 73 NLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 999999999999999999999999887
No 151
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.47 E-value=0.00037 Score=80.83 Aligned_cols=157 Identities=11% Similarity=-0.001 Sum_probs=88.6
Q ss_pred cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHH-HHHH--HHHHHH
Q 007648 396 EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLAS-IWCE--WAEMEL 472 (594)
Q Consensus 396 ~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~-~~~~--~~~~~~ 472 (594)
.|++++|...+++++....... .......+..++.++...|+++.|...+++++...+........ .... ......
T Consensus 586 ~G~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (903)
T PRK04841 586 WARLDEAEQCARKGLEVLSNYQ-PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQ 664 (903)
T ss_pred hcCHHHHHHHHHHhHHhhhccC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHH
Confidence 3778888888888776422111 01123455567777778888888888888887653322100000 0000 112223
Q ss_pred hcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccC------
Q 007648 473 RHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRI------ 546 (594)
Q Consensus 473 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P------ 546 (594)
..|+.+.|..++.+.....+... +.....+...+.++...|++++|...+++++....
T Consensus 665 ~~g~~~~A~~~l~~~~~~~~~~~----------------~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~ 728 (903)
T PRK04841 665 MTGDKEAAANWLRQAPKPEFANN----------------HFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMS 728 (903)
T ss_pred HCCCHHHHHHHHHhcCCCCCccc----------------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH
Confidence 46778888888777654322100 00112245566667777777777777777777421
Q ss_pred CchHHHHHHHHHHHHhchhhhhh
Q 007648 547 ATPQIIINYALLLEVWTLLHVFL 569 (594)
Q Consensus 547 ~~~~~~~~~~~~~~~~g~~~~a~ 569 (594)
....+...++..+...|+.++|.
T Consensus 729 ~~a~~~~~la~a~~~~G~~~~A~ 751 (903)
T PRK04841 729 DLNRNLILLNQLYWQQGRKSEAQ 751 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHH
Confidence 22345566777777777776664
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.44 E-value=5.1e-07 Score=70.96 Aligned_cols=83 Identities=13% Similarity=0.190 Sum_probs=53.6
Q ss_pred cCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccH
Q 007648 436 YKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSL 515 (594)
Q Consensus 436 ~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 515 (594)
+|+++.|+.+++++++..|.++ -..+|+.+|.++.+.|++++|..++++ .+..|. ++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~--------------------~~ 58 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS--------------------NP 58 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC--------------------HH
T ss_pred CccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC--------------------CH
Confidence 5677777777777777777532 115666677777777777777777777 544442 23
Q ss_pred hhHHHHHHHHHHhCChHHHHHHHHHH
Q 007648 516 RLWTFYVDLEESLGNLESTRAVYERI 541 (594)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (594)
.....++..+.++|++++|++++++|
T Consensus 59 ~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 59 DIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 44455577777777777777777764
No 153
>PRK11906 transcriptional regulator; Provisional
Probab=98.43 E-value=8.1e-06 Score=82.22 Aligned_cols=162 Identities=9% Similarity=0.039 Sum_probs=119.3
Q ss_pred hhccCCCCh---HHH--HHH--HHHh--cC---CchhHHHHHHHHH---hccCCCcccCCchHHHHHHHHHHHhc-----
Q 007648 377 LLRQNPHNV---EQW--HRR--VKIF--EG---NPTKQILTYTEAV---RTVDPMKAVGKPHTLWVAFAKLYETY----- 436 (594)
Q Consensus 377 ~l~~~p~~~---~~~--~~~--~~~~--~~---~~~~a~~~y~~Ai---~~~~~~~~~~~~~~~~~~~a~~~~~~----- 436 (594)
+.+..|.+. ++| -.+ |.-. .+ ..++|..+|.+|+ . ++|. +..+|..++.++...
T Consensus 240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~-ldp~-----~a~a~~~lA~~h~~~~~~g~ 313 (458)
T PRK11906 240 SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSD-IQTL-----KTECYCLLAECHMSLALHGK 313 (458)
T ss_pred hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhccc-CCcc-----cHHHHHHHHHHHHHHHHhcC
Confidence 345557777 777 222 2222 22 4778999999999 4 4554 556666666665522
Q ss_pred ----CCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhh
Q 007648 437 ----KDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLH 512 (594)
Q Consensus 437 ----~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 512 (594)
.+..+|+..-++|++++|.++ .+...+|....-.++++.|...|++|+.++|+
T Consensus 314 ~~~~~~~~~a~~~A~rAveld~~Da----~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn------------------- 370 (458)
T PRK11906 314 SELELAAQKALELLDYVSDITTVDG----KILAIMGLITGLSGQAKVSHILFEQAKIHSTD------------------- 370 (458)
T ss_pred CCchHHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-------------------
Confidence 346788899999999999999 66667777666678899999999999999996
Q ss_pred ccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHH--HHHHHHHHHhchhhhhh
Q 007648 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQII--INYALLLEVWTLLHVFL 569 (594)
Q Consensus 513 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~--~~~~~~~~~~g~~~~a~ 569 (594)
+..+|...+.+..-.|+.++|+...++|++++|.-..+= -.+...|. ..-.++|+
T Consensus 371 -~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~-~~~~~~~~ 427 (458)
T PRK11906 371 -IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV-PNPLKNNI 427 (458)
T ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc-CCchhhhH
Confidence 668888888888889999999999999999999865432 23444564 44455555
No 154
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.43 E-value=4.5e-06 Score=80.31 Aligned_cols=112 Identities=11% Similarity=-0.006 Sum_probs=87.0
Q ss_pred hHHHHHHHHHH-HhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhc
Q 007648 423 HTLWVAFAKLY-ETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (594)
Q Consensus 423 ~~~~~~~a~~~-~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 501 (594)
...++..|..+ ...|++++|+..|++.++..|+++..- .+++.+|.++...|++++|+..|+++++..|+..
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~-~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~------ 214 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQP-NANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP------ 214 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc------
Confidence 35566666554 356889999999999999888884221 5777888888889999999999999998888521
Q ss_pred cCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHH
Q 007648 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQII 552 (594)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 552 (594)
..+..+...+.++..+|+.++|++.|+++++..|++..+-
T Consensus 215 -----------~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 215 -----------KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred -----------chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 1356777788888888999999999999999999887543
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.40 E-value=4.3e-06 Score=70.41 Aligned_cols=104 Identities=10% Similarity=0.035 Sum_probs=85.6
Q ss_pred HHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHH
Q 007648 386 EQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASI 463 (594)
Q Consensus 386 ~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~ 463 (594)
+.++..+..+ .|++++|...|++++...|. +. ....+++.+|.++...|+++.|...|++++...|+++.. ..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~~ 78 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPK-ST--YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA-PDA 78 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cc--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc-cHH
Confidence 4556666555 48999999999999986432 21 136788999999999999999999999999998886421 167
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCCch
Q 007648 464 WCEWAEMELRHKNFKGALELMRRATAEPSV 493 (594)
Q Consensus 464 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 493 (594)
++.++.++.+.|++++|...++++++..|+
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 889999999999999999999999999996
No 156
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.38 E-value=7e-07 Score=66.96 Aligned_cols=66 Identities=17% Similarity=0.238 Sum_probs=59.8
Q ss_pred HhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHH
Q 007648 472 LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI 551 (594)
Q Consensus 472 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 551 (594)
+..|++++|.++|+++++.+|+ ++.++..++.++.+.|++++|+.++++++..+|++|..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~--------------------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD--------------------NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT--------------------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC--------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 4689999999999999999995 67999999999999999999999999999999999988
Q ss_pred HHHHHH
Q 007648 552 IINYAL 557 (594)
Q Consensus 552 ~~~~~~ 557 (594)
+.-++.
T Consensus 62 ~~l~a~ 67 (68)
T PF14559_consen 62 QQLLAQ 67 (68)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 877665
No 157
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.37 E-value=1.3e-06 Score=65.40 Aligned_cols=63 Identities=16% Similarity=0.201 Sum_probs=56.7
Q ss_pred chhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 007648 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYL 145 (594)
Q Consensus 81 ~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~ 145 (594)
.|++++|...|++++..+|+++.+++.++.++.++|++++|+.++++++...|.+ +.+|...+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~l~a 66 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN--PEYQQLLA 66 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH--HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH--HHHHHHHh
Confidence 5899999999999999999999999999999999999999999999999999974 56666544
No 158
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.36 E-value=0.0012 Score=76.51 Aligned_cols=321 Identities=13% Similarity=0.083 Sum_probs=181.7
Q ss_pred CchhHHHHHHHHHHHHHhcCC-----Ch----HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHH---HHHHHHHHH
Q 007648 80 THPEYETLNNTFERALVTMHK-----MP----RIWIMYLETLTSQKFITKARRTFDRALCALPVTQHD---RIWEIYLRF 147 (594)
Q Consensus 80 ~~~~~~~A~~~~~~al~~~P~-----~~----~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~---~~w~~~~~~ 147 (594)
..++++++...+.++....+. .+ .+....+.+....|+++.|...+++++...|..... ..+..++..
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 357889999999988776432 11 222334455567899999999999999866653211 122334444
Q ss_pred HHHcCCchHHHHHHHHHHHhhCCCC--H--H-----HHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHH
Q 007648 148 VEQEGIPIETSLRVYRRYLKYDPSH--I--E-----DFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELC 218 (594)
Q Consensus 148 ~~~~~~~~~~a~~~~~~~l~~~p~~--~--~-----~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 218 (594)
....|++ ++|...+++++...... . . .+...+...|++++|...+++++.
T Consensus 501 ~~~~G~~-~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~-------------------- 559 (903)
T PRK04841 501 HHCKGEL-ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQ-------------------- 559 (903)
T ss_pred HHHcCCH-HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------------
Confidence 5568888 99999999988764321 1 1 123456778999999998887762
Q ss_pred HHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHH
Q 007648 219 DLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEI 298 (594)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~ 298 (594)
.....+.. ..+. ...++..+|.++...|+++.|...+++++......... .....+..
T Consensus 560 -~~~~~~~~---------------~~~~-~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~---- 617 (903)
T PRK04841 560 -LIEEQHLE---------------QLPM-HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ-QQLQCLAM---- 617 (903)
T ss_pred -HHHHhccc---------------cccH-HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch-HHHHHHHH----
Confidence 00000000 0000 01235567888888999999999999988754321100 00000000
Q ss_pred HHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhh
Q 007648 299 MVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLL 378 (594)
Q Consensus 299 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 378 (594)
T Consensus 618 -------------------------------------------------------------------------------- 617 (903)
T PRK04841 618 -------------------------------------------------------------------------------- 617 (903)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCChHHHHHHHHHhcCCchhHHHHHHHHHhccCCCcccCCchHHHHH--HHHHHHhcCCHHHHHHHHHHHHhccCCC
Q 007648 379 RQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVA--FAKLYETYKDIANARVIFDKAVQVNYKT 456 (594)
Q Consensus 379 ~~~p~~~~~~~~~~~~~~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~~A~~~~~kal~~~p~~ 456 (594)
...+....|+++.|...++++.......... ........ ....+...|+.+.|...+.+.....+..
T Consensus 618 ----------la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~ 686 (903)
T PRK04841 618 ----------LAKISLARGDLDNARRYLNRLENLLGNGRYH-SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFAN 686 (903)
T ss_pred ----------HHHHHHHcCCHHHHHHHHHHHHHHHhccccc-HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCcc
Confidence 0001112255555666666654421110000 00000000 1122334678888888877766533222
Q ss_pred hhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHH
Q 007648 457 VDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRA 536 (594)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 536 (594)
+......+..++..+...|++++|...+++++....... . ...-......++..+.+.|+.++|+.
T Consensus 687 ~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g--------~------~~~~a~~~~~la~a~~~~G~~~~A~~ 752 (903)
T PRK04841 687 NHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLR--------L------MSDLNRNLILLNQLYWQQGRKSEAQR 752 (903)
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--------c------hHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 211112345666677778888888888888877533100 0 00122455667778888888888888
Q ss_pred HHHHHHhccCCc
Q 007648 537 VYERILDLRIAT 548 (594)
Q Consensus 537 ~~~~al~~~P~~ 548 (594)
.+++|+++....
T Consensus 753 ~L~~Al~la~~~ 764 (903)
T PRK04841 753 VLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHhCcc
Confidence 888888876443
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.34 E-value=1.3e-06 Score=68.71 Aligned_cols=82 Identities=16% Similarity=0.189 Sum_probs=69.2
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCC
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~ 476 (594)
|+++.|+..|++++...|.+. ....|+.+|.++.+.|++++|..++++ ++.+|.++ ...+.+|.++.+.|+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~----~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~----~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNP----NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNP----DIHYLLARCLLKLGK 73 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTH----HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHH----HHHHHHHHHHHHTT-
T ss_pred ccHHHHHHHHHHHHHHCCCCh----hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCH----HHHHHHHHHHHHhCC
Confidence 678999999999998644210 356788899999999999999999999 88888887 777788999999999
Q ss_pred hHHHHHHHHHH
Q 007648 477 FKGALELMRRA 487 (594)
Q Consensus 477 ~~~A~~~~~~a 487 (594)
+++|+++|+++
T Consensus 74 y~eAi~~l~~~ 84 (84)
T PF12895_consen 74 YEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999999986
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.33 E-value=6.1e-06 Score=74.75 Aligned_cols=109 Identities=15% Similarity=0.165 Sum_probs=87.5
Q ss_pred hccCCCChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 007648 378 LRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK 455 (594)
Q Consensus 378 l~~~p~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~ 455 (594)
+..+|.+...++.+|..+ .|++++|...|++++... |+.. ....+|..+|.++...|++++|+..+++++...|.
T Consensus 28 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 104 (172)
T PRK02603 28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-EDPN--DRSYILYNMGIIYASNGEHDKALEYYHQALELNPK 104 (172)
T ss_pred cccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hccc--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 444556677788888877 489999999999999753 2211 13578999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCC--------------hHHHHHHHHHHhcCCch
Q 007648 456 TVDHLASIWCEWAEMELRHKN--------------FKGALELMRRATAEPSV 493 (594)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~al~~~p~ 493 (594)
++ ..+..++.++...|+ +++|.+.++++++..|+
T Consensus 105 ~~----~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 105 QP----SALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred cH----HHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch
Confidence 98 777788888777666 57788888888888885
No 161
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.32 E-value=3.3e-05 Score=67.72 Aligned_cols=126 Identities=17% Similarity=0.096 Sum_probs=86.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCC---h
Q 007648 29 LWWRYLVAKREAPFKKRFVIYERALKALPGSY---KLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKM---P 102 (594)
Q Consensus 29 ~w~~~~~~~~~~~~~~a~~~~e~al~~~P~s~---~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~---~ 102 (594)
.+...+.....++...+...+++.++.+|.++ ..++..+... ...|++++|...|+.++...|+. +
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~--------~~~g~~~~A~~~l~~~~~~~~d~~l~~ 85 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAA--------YEQGDYDEAKAALEKALANAPDPELKP 85 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH--------HHCCCHHHHHHHHHHHHhhCCCHHHHH
Confidence 34444444446888888888888888888873 3333333332 45688888888888888877554 3
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 007648 103 RIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYL 166 (594)
Q Consensus 103 ~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l 166 (594)
.+++.++.+++.+|+++.|...++.. .-.+. ....+...++++...|+. ++|+..|++++
T Consensus 86 ~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~--~~~~~~~~Gdi~~~~g~~-~~A~~~y~~Al 145 (145)
T PF09976_consen 86 LARLRLARILLQQGQYDEALATLQQI-PDEAF--KALAAELLGDIYLAQGDY-DEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhc-cCcch--HHHHHHHHHHHHHHCCCH-HHHHHHHHHhC
Confidence 47777888888888888888888652 21222 245666777777788888 88888887764
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.31 E-value=5.9e-06 Score=74.58 Aligned_cols=114 Identities=12% Similarity=-0.030 Sum_probs=90.5
Q ss_pred CCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHh
Q 007648 437 KDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLR 516 (594)
Q Consensus 437 ~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 516 (594)
+++..+...+.+.++..+.+. ....|+..|......|++++|...|++++...|+.. ..+.
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~-----------------~~~~ 73 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEK--EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY-----------------DRSY 73 (168)
T ss_pred cccccchhhhhHhccCCchhH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch-----------------hhHH
Confidence 335566666655555544442 227889999998899999999999999998876310 1235
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHH-------Hhchhhhhh
Q 007648 517 LWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLE-------VWTLLHVFL 569 (594)
Q Consensus 517 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~-------~~g~~~~a~ 569 (594)
.|..++.++...|++++|+..|++++.+.|..+..+.+++.++. +.|++++|+
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~ 133 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAE 133 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHH
Confidence 78999999999999999999999999999999999999999988 777777554
No 163
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.31 E-value=1.8e-05 Score=77.54 Aligned_cols=124 Identities=11% Similarity=0.128 Sum_probs=94.9
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhc
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 501 (594)
..++.....+++.+.++++.|.+.+++.-+.+.++. +..+.-.|..+.....++.+|..+|+......|.
T Consensus 130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~--l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~-------- 199 (290)
T PF04733_consen 130 SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSI--LTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS-------- 199 (290)
T ss_dssp CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHH--HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS----------
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHH--HHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC--------
Confidence 456667777888899999999999999888876654 2234444444433445799999999998887763
Q ss_pred cCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhh
Q 007648 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHV 567 (594)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~ 567 (594)
++.+....+-....+|++++|.++++.|+..+|++|+++.|++-+....|+-.+
T Consensus 200 ------------t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~ 253 (290)
T PF04733_consen 200 ------------TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTE 253 (290)
T ss_dssp ------------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCH
T ss_pred ------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChh
Confidence 568888888889999999999999999999999999999999998888887633
No 164
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.30 E-value=4.7e-05 Score=70.90 Aligned_cols=171 Identities=10% Similarity=0.072 Sum_probs=116.9
Q ss_pred HHHHHHHHH--hcCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHH
Q 007648 386 EQWHRRVKI--FEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASI 463 (594)
Q Consensus 386 ~~~~~~~~~--~~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~ 463 (594)
+.++..|.. ..|++.+|+..|++.+...|.. .....+.+.+|..+.+.|+++.|+..+++.++..|+++.. ..+
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s---~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A 81 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNS---PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYA 81 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS---TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhH
Confidence 344444443 3589999999999999875542 2357889999999999999999999999999999998843 245
Q ss_pred HHHHHHHHHh-----------cCChHHHHHHHHHHhcCCchhH-----hhhhhccCChhhhHHhhccHhhHHHHHHHHHH
Q 007648 464 WCEWAEMELR-----------HKNFKGALELMRRATAEPSVEV-----RRRVAADGNEPVQMKLHKSLRLWTFYVDLEES 527 (594)
Q Consensus 464 ~~~~~~~~~~-----------~~~~~~A~~~~~~al~~~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (594)
++..|..... .+...+|...|+..+...|+.. ..++... ...+ ..-=+.-++++.+
T Consensus 82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l-----~~~l---a~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAEL-----RNRL---AEHELYIARFYYK 153 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHH-----HHHH---HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHH-----HHHH---HHHHHHHHHHHHH
Confidence 5655654322 2335689999999999999732 1111100 0000 0112345788999
Q ss_pred hCChHHHHHHHHHHHhccCCch---HHHHHHHHHHHHhchhhhh
Q 007648 528 LGNLESTRAVYERILDLRIATP---QIIINYALLLEVWTLLHVF 568 (594)
Q Consensus 528 ~g~~~~A~~~~~~al~~~P~~~---~~~~~~~~~~~~~g~~~~a 568 (594)
.|.+..|..-++.+++..|+.+ +++..++..+.+.|..+.+
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 9999999999999999999987 4677888889999988754
No 165
>PRK11906 transcriptional regulator; Provisional
Probab=98.30 E-value=5.8e-05 Score=76.16 Aligned_cols=176 Identities=8% Similarity=-0.016 Sum_probs=128.8
Q ss_pred HHHHhhCCCCH---HHH--HHHHHHHH---c---CChhHHHHHHHHHH---HhCCCChHHHHHHHHHHHHh-ccCCCCCc
Q 007648 17 EEELLRNPFSL---KLW--WRYLVAKR---E---APFKKRFVIYERAL---KALPGSYKLWHAYLIERLSI-VKNLPITH 81 (594)
Q Consensus 17 e~~l~~~P~~~---~~w--~~~~~~~~---~---~~~~~a~~~~e~al---~~~P~s~~lW~~~~~~~~~~-~~~~~~~~ 81 (594)
|.+.+.-|.+. +.| -.|++... . .+.+.|..+|.+|+ ..+|.....+...+.-.... ..+.....
T Consensus 238 E~~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~ 317 (458)
T PRK11906 238 ERSVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELE 317 (458)
T ss_pred hhhhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCch
Confidence 33334447888 899 66666443 2 34578889999999 88888776655443322211 11111256
Q ss_pred hhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHH
Q 007648 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRV 161 (594)
Q Consensus 82 ~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~ 161 (594)
.+..+|.+.-++|++++|.++......|....-.++++.|...|++|+.++|+. ...|...+....-.|+. ++|.+.
T Consensus 318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~--A~~~~~~~~~~~~~G~~-~~a~~~ 394 (458)
T PRK11906 318 LAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDI--ASLYYYRALVHFHNEKI-EEARIC 394 (458)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCcc--HHHHHHHHHHHHHcCCH-HHHHHH
Confidence 788999999999999999999999999998888888999999999999999986 77888777777777888 999999
Q ss_pred HHHHHhhCCCCHH-HHHHHHH---hcccHHHHHHHHHH
Q 007648 162 YRRYLKYDPSHIE-DFIEFLV---KSKLWQEAAERLAS 195 (594)
Q Consensus 162 ~~~~l~~~p~~~~-~~~~~~~---~~~~~~~a~~~~~~ 195 (594)
++++++++|-... ...++.. -....+.|+++|-+
T Consensus 395 i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 395 IDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 9999999998764 2222221 22345666666543
No 166
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.30 E-value=5e-05 Score=72.58 Aligned_cols=181 Identities=9% Similarity=0.004 Sum_probs=127.2
Q ss_pred ChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHH
Q 007648 384 NVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLA 461 (594)
Q Consensus 384 ~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~ 461 (594)
.++.++..+... .|++++|+..|++.+... |... ....+.+++|..+.+.++++.|+..+++.++..|+++.. .
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~--~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~ 106 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGP--YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-D 106 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCh--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-H
Confidence 344444444433 489999999999998864 4322 134567888999999999999999999999999999844 2
Q ss_pred HHHHHHHHHHHhcC---------------C---hHHHHHHHHHHhcCCchhH-----hhhhhccCChhhhHHhhccHhhH
Q 007648 462 SIWCEWAEMELRHK---------------N---FKGALELMRRATAEPSVEV-----RRRVAADGNEPVQMKLHKSLRLW 518 (594)
Q Consensus 462 ~~~~~~~~~~~~~~---------------~---~~~A~~~~~~al~~~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 518 (594)
.+++..|......+ | ..+|...|++.++..|+.. ..++... ..++ ..--
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l-----~~~l---a~~e 178 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFL-----KDRL---AKYE 178 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH-----HHHH---HHHH
Confidence 45666665432221 2 3467799999999999632 1111100 0000 0112
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhccCCch---HHHHHHHHHHHHhchhhhhhhcccCcc
Q 007648 519 TFYVDLEESLGNLESTRAVYERILDLRIATP---QIIINYALLLEVWTLLHVFLLHVPFTF 576 (594)
Q Consensus 519 ~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~~~~~~~~~g~~~~a~~~~~~~~ 576 (594)
+.-+.++.+.|.+..|..-++.+++..|+.+ ++...++..+...|..++|-....++.
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3557788899999999999999999888776 577788899999999999876555443
No 167
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.28 E-value=1.4e-05 Score=80.84 Aligned_cols=112 Identities=18% Similarity=0.224 Sum_probs=100.3
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCC
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~ 476 (594)
++++.|+.++++-.+. . ++++..++.++...++..+|+.++.++++..|.+. .++...+.++++.++
T Consensus 183 ~~~~~ai~lle~L~~~-~--------pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~----~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 183 QRYDEAIELLEKLRER-D--------PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDS----ELLNLQAEFLLSKKK 249 (395)
T ss_pred ccHHHHHHHHHHHHhc-C--------CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCC
Confidence 6899999999997764 2 35667788888888899999999999999999998 899999999999999
Q ss_pred hHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHH
Q 007648 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (594)
Q Consensus 477 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (594)
++.|.++.++|+...|+ +-..|..++.+|.++|+++.|...++.+
T Consensus 250 ~~lAL~iAk~av~lsP~--------------------~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELSPS--------------------EFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhCch--------------------hHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999996 4588999999999999999999887753
No 168
>PRK15331 chaperone protein SicA; Provisional
Probab=98.28 E-value=1.7e-05 Score=68.82 Aligned_cols=105 Identities=14% Similarity=0.067 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccC
Q 007648 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADG 503 (594)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 503 (594)
+..+.+|.-....|+++.|..+|.-..-.+|.++ +.|+.+|.+....|++++|...|-.|..+.++
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~----~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~---------- 103 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNP----DYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN---------- 103 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC----------
Confidence 4445666666689999999999999999999999 99999999999999999999999999998885
Q ss_pred ChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHH
Q 007648 504 NEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIII 553 (594)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~ 553 (594)
||....+.++.+..+|+.+.|+.+|+.++. +|.++.+..
T Consensus 104 ----------dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~ 142 (165)
T PRK15331 104 ----------DYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRA 142 (165)
T ss_pred ----------CCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHH
Confidence 566677888999999999999999999999 688766554
No 169
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.25 E-value=3.9e-05 Score=66.99 Aligned_cols=127 Identities=13% Similarity=0.104 Sum_probs=107.6
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHh-ccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhh
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 500 (594)
...-.+.+++...+.|++.+|+..|++++. +...++ .+.+.+++.....+++-.|...+++..+.+|.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~----a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa------- 156 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDA----AMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA------- 156 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH----HHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc-------
Confidence 356678888888899999999999999987 677787 78888888888889999999999999999884
Q ss_pred ccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhhhc
Q 007648 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFLLH 571 (594)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~~~ 571 (594)
+.+|+....|+..+...|++++|...|+.++..-| .|+....|+.++.++|+..++...
T Consensus 157 -----------~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 157 -----------FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred -----------cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHH
Confidence 13567778889999999999999999999999775 468888999999999987777533
No 170
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.23 E-value=5e-06 Score=63.28 Aligned_cols=68 Identities=25% Similarity=0.306 Sum_probs=60.9
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCc
Q 007648 469 EMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT 548 (594)
Q Consensus 469 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~ 548 (594)
.++.+.+++++|.+++++++..+|+ ++.+|..++.++.+.|++++|+..++++++..|++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~--------------------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD--------------------DPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc--------------------cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 4556889999999999999999995 67999999999999999999999999999999999
Q ss_pred hHHHHHHH
Q 007648 549 PQIIINYA 556 (594)
Q Consensus 549 ~~~~~~~~ 556 (594)
+++..-.+
T Consensus 63 ~~~~~~~a 70 (73)
T PF13371_consen 63 PDARALRA 70 (73)
T ss_pred HHHHHHHH
Confidence 88765443
No 171
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.21 E-value=2.1e-06 Score=57.87 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHH
Q 007648 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALL 558 (594)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~ 558 (594)
.+|..++..+.+.|++++|+++|+++++.+|+++.+|..++++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 6789999999999999999999999999999999999998863
No 172
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=2.4e-05 Score=76.89 Aligned_cols=127 Identities=13% Similarity=0.136 Sum_probs=98.4
Q ss_pred CCchhHHHHHHHHHhccCCCccc---------CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHH
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAV---------GKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEW 467 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~ 467 (594)
|++..|..-|++|+..+...... ..-..++++++.++.+++.+..|+...+++|..+|.|+ ...++.
T Consensus 222 gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~----KALyRr 297 (397)
T KOG0543|consen 222 GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV----KALYRR 297 (397)
T ss_pred chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch----hHHHHH
Confidence 67899999999999865432211 11346789999999999999999999999999999999 999999
Q ss_pred HHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCCh-HHHHHHHHHHHhccC
Q 007648 468 AEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNL-ESTRAVYERILDLRI 546 (594)
Q Consensus 468 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~A~~~~~~al~~~P 546 (594)
|+.++..|+++.|+..|++|+++.|++ -.+-..++.+-.+...+ +..++.|.+++...+
T Consensus 298 G~A~l~~~e~~~A~~df~ka~k~~P~N--------------------ka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 298 GQALLALGEYDLARDDFQKALKLEPSN--------------------KAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHhhccHHHHHHHHHHHHHhCCCc--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999962 23333333333333333 445888888888655
Q ss_pred C
Q 007648 547 A 547 (594)
Q Consensus 547 ~ 547 (594)
.
T Consensus 358 ~ 358 (397)
T KOG0543|consen 358 E 358 (397)
T ss_pred c
Confidence 3
No 173
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.16 E-value=5.6e-05 Score=72.78 Aligned_cols=102 Identities=11% Similarity=0.046 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHH--HcCChhHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCC
Q 007648 26 SLKLWWRYLVAK--REAPFKKRFVIYERALKALPGS---YKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHK 100 (594)
Q Consensus 26 ~~~~w~~~~~~~--~~~~~~~a~~~~e~al~~~P~s---~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~ 100 (594)
+...|...+... ..+++++|+..|+.+++.+|.+ +..+...+... ...|+++.|+..|+++++.+|+
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y--------~~~g~~~~A~~~f~~vv~~yP~ 212 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLN--------YNKGKKDDAAYYFASVVKNYPK 212 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHHHCCC
Confidence 345666655533 3678888888888888888877 34554444443 3457788888888888877766
Q ss_pred ---ChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 007648 101 ---MPRIWIMYLETLTSQKFITKARRTFDRALCALPVT 135 (594)
Q Consensus 101 ---~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~ 135 (594)
.+..|+..+.++...|+.+.|+.+|+++++..|++
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 45677777788878888888888888888888875
No 174
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.14 E-value=0.0028 Score=67.42 Aligned_cols=363 Identities=18% Similarity=0.185 Sum_probs=189.9
Q ss_pred CCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccc----------HHHHH--HHHHHHHHhCCCCCHHHHHHHHHH
Q 007648 79 ITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKF----------ITKAR--RTFDRALCALPVTQHDRIWEIYLR 146 (594)
Q Consensus 79 ~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~----------~~~A~--~~~~ral~~~p~~~~~~~w~~~~~ 146 (594)
.+.|+.+.|-+-.+ .. .|..+|...+.+..+..+ +..|| +.+++|.+ +|.+ .+.--+.+.
T Consensus 739 vtiG~MD~AfksI~----~I-kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~e--~eakvAvLA 810 (1416)
T KOG3617|consen 739 VTIGSMDAAFKSIQ----FI-KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGEE--DEAKVAVLA 810 (1416)
T ss_pred EEeccHHHHHHHHH----HH-hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCcc--hhhHHHHHH
Confidence 56688887754333 22 566899999999988654 33333 23455555 4533 122122222
Q ss_pred HHHHcCCchHHHHHHHHHHHhhCCCCHHHHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhccc
Q 007648 147 FVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHAT 226 (594)
Q Consensus 147 ~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 226 (594)
+ .+|-. ++|..+|+++-+.+ .+-++|...|.+++|.++-+. .+
T Consensus 811 i--eLgMl-EeA~~lYr~ckR~D-----LlNKlyQs~g~w~eA~eiAE~-----------------------------~D 853 (1416)
T KOG3617|consen 811 I--ELGML-EEALILYRQCKRYD-----LLNKLYQSQGMWSEAFEIAET-----------------------------KD 853 (1416)
T ss_pred H--HHhhH-HHHHHHHHHHHHHH-----HHHHHHHhcccHHHHHHHHhh-----------------------------cc
Confidence 2 34545 88888888765442 234677888888887775221 11
Q ss_pred ccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcC
Q 007648 227 EISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAK 306 (594)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~ 306 (594)
.+ .....++++|..+...+|.+.|++.|+++=... -.++.-......+... .+.
T Consensus 854 Ri------------------HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~ha------fev~rmL~e~p~~~e~-Yv~- 907 (1416)
T KOG3617|consen 854 RI------------------HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHA------FEVFRMLKEYPKQIEQ-YVR- 907 (1416)
T ss_pred ce------------------ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChH------HHHHHHHHhChHHHHH-HHH-
Confidence 10 013578899999999999999999999863211 0111111111111000 000
Q ss_pred CCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChH
Q 007648 307 PDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVE 386 (594)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 386 (594)
+. +++.++ +|+..| ++..++++.++..|+.+ +
T Consensus 908 --~~-------------~d~~L~-~WWgqY------------lES~GemdaAl~~Y~~A--------------------~ 939 (1416)
T KOG3617|consen 908 --RK-------------RDESLY-SWWGQY------------LESVGEMDAALSFYSSA--------------------K 939 (1416)
T ss_pred --hc-------------cchHHH-HHHHHH------------HhcccchHHHHHHHHHh--------------------h
Confidence 00 000111 111111 12345566666666553 2
Q ss_pred HHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHH------HhccCCChh
Q 007648 387 QWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKA------VQVNYKTVD 458 (594)
Q Consensus 387 ~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ka------l~~~p~~~~ 458 (594)
-|+.++++. .|+.++|..+-++ .. .-.+-+.+|..|+..|+..+|...|-|| +++.-+|.
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~e-----sg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd- 1007 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEE-----SG------DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND- 1007 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHh-----cc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 344444443 4666666554433 11 2345677888888888888888776664 34333331
Q ss_pred hHHH-HHHH-----------HHH-HHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHh-------hccHhhH
Q 007648 459 HLAS-IWCE-----------WAE-MELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKL-------HKSLRLW 518 (594)
Q Consensus 459 ~~~~-~~~~-----------~~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 518 (594)
|.+ +|.. -+. ++...|+.+.|..+|-+|=.+...- .+.|...-.....+ ..||.+.
T Consensus 1008 -~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kAL---elAF~tqQf~aL~lIa~DLd~~sDp~ll 1083 (1416)
T KOG3617|consen 1008 -MKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKAL---ELAFRTQQFSALDLIAKDLDAGSDPKLL 1083 (1416)
T ss_pred -HHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHH---HHHHhhcccHHHHHHHHhcCCCCCHHHH
Confidence 111 2211 111 1222334445555444442221100 00011000000111 1478888
Q ss_pred HHHHHHHHHhCChHHHHHH------HHHHHhcc----------------C---Cc------hHHHHHHHHHHHHhchhhh
Q 007648 519 TFYVDLEESLGNLESTRAV------YERILDLR----------------I---AT------PQIIINYALLLEVWTLLHV 567 (594)
Q Consensus 519 ~~~~~~~~~~g~~~~A~~~------~~~al~~~----------------P---~~------~~~~~~~~~~~~~~g~~~~ 567 (594)
..-++|.....++++|..+ |++|+++- | +. .++....+.+..++|.|.-
T Consensus 1084 ~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~ 1163 (1416)
T KOG3617|consen 1084 RRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHA 1163 (1416)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHH
Confidence 8889999888889888765 45666531 1 11 2477788999999999988
Q ss_pred hhhcccCcc
Q 007648 568 FLLHVPFTF 576 (594)
Q Consensus 568 a~~~~~~~~ 576 (594)
|-+.+..-+
T Consensus 1164 AtKKfTQAG 1172 (1416)
T KOG3617|consen 1164 ATKKFTQAG 1172 (1416)
T ss_pred HHHHHhhhh
Confidence 876555433
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.14 E-value=0.00017 Score=71.02 Aligned_cols=163 Identities=13% Similarity=0.134 Sum_probs=105.9
Q ss_pred CchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhc-CCHHHHHHHHHHHHhc--cCCChhhHHHHHHHHHHHHHhc
Q 007648 398 NPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETY-KDIANARVIFDKAVQV--NYKTVDHLASIWCEWAEMELRH 474 (594)
Q Consensus 398 ~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~~~~~~ 474 (594)
++++|+.+|++|+...-..........+...+|.+++.. |+++.|+..|++|+.. ..+.+..-..+....+.+..+.
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 556677777777764211000111356788889999988 9999999999999985 3334445557888999999999
Q ss_pred CChHHHHHHHHHHhcCCchh-HhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCch----
Q 007648 475 KNFKGALELMRRATAEPSVE-VRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP---- 549 (594)
Q Consensus 475 ~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~---- 549 (594)
|++++|.++|++.....-+. ... +.-...++.-+-+....|+.-.|.+.+++....+|.-.
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~--------------~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E 234 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLK--------------YSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSRE 234 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTG--------------HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHH
T ss_pred CCHHHHHHHHHHHHHHhhcccccc--------------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 99999999999998765421 100 00113444455566678999999999999999887433
Q ss_pred -HHHHHHHHHHHHh--chhhhhhhcccC
Q 007648 550 -QIIINYALLLEVW--TLLHVFLLHVPF 574 (594)
Q Consensus 550 -~~~~~~~~~~~~~--g~~~~a~~~~~~ 574 (594)
.+...+...+... ..+.+++..|.-
T Consensus 235 ~~~~~~l~~A~~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 235 YKFLEDLLEAYEEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHCHHHTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcc
Confidence 3555666666432 255566644443
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.12 E-value=4.3e-05 Score=75.16 Aligned_cols=158 Identities=17% Similarity=0.166 Sum_probs=109.2
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cCCChhhHHHHHHHHHHHHHhc
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQV--NYKTVDHLASIWCEWAEMELRH 474 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~~~~~~ 474 (594)
+++++|..+|.+|................+...+.++.+. +++.|+..|++|+.+ .-.++..-..+....|.++...
T Consensus 49 ~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~ 127 (282)
T PF14938_consen 49 KDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQ 127 (282)
T ss_dssp T-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCT
T ss_pred hccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 7889999999999864211111111356677777777655 999999999999985 4555655567888999998887
Q ss_pred -CChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCch----
Q 007648 475 -KNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP---- 549 (594)
Q Consensus 475 -~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~---- 549 (594)
|++++|++.|++|+...... +.. ..........+.++.++|++++|.++|++.....-+++
T Consensus 128 ~~d~e~Ai~~Y~~A~~~y~~e--------~~~------~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 128 LGDYEKAIEYYQKAAELYEQE--------GSP------HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp T--HHHHHHHHHHHHHHHHHT--------T-H------HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred cCCHHHHHHHHHHHHHHHHHC--------CCh------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 99999999999999875421 000 01236678889999999999999999999988543322
Q ss_pred ---HHHHHHHHHHHHhchhhhhh
Q 007648 550 ---QIIINYALLLEVWTLLHVFL 569 (594)
Q Consensus 550 ---~~~~~~~~~~~~~g~~~~a~ 569 (594)
..+..-+.++...||.-.|.
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~ 216 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAAR 216 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHHH
Confidence 24445566777788877765
No 177
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.12 E-value=7e-06 Score=62.45 Aligned_cols=60 Identities=18% Similarity=0.329 Sum_probs=55.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCch
Q 007648 430 AKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSV 493 (594)
Q Consensus 430 a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 493 (594)
..++.+.++++.|+.++++++..+|+++ .+|..+|.++.+.|++++|+..|+++++..|+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDP----ELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccc----hhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 4567789999999999999999999999 99999999999999999999999999999996
No 178
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.09 E-value=8.4e-05 Score=62.00 Aligned_cols=102 Identities=14% Similarity=0.064 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccC
Q 007648 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADG 503 (594)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 503 (594)
.+++..|..+...|+.++|+..|++++...++.+ ....+++.++..+...|++++|..++++++...|++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~-~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~-------- 72 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGA-DRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE-------- 72 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc--------
Confidence 4567778788888999999999999988654443 2336888888888889999999999999998878521
Q ss_pred ChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHh
Q 007648 504 NEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543 (594)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 543 (594)
.+..+...++......|+.++|...+-.++.
T Consensus 73 ---------~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 73 ---------LNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ---------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1346667778888888999999988888776
No 179
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.07 E-value=6.4e-05 Score=62.72 Aligned_cols=98 Identities=15% Similarity=0.080 Sum_probs=81.1
Q ss_pred HHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC---ChhhH
Q 007648 386 EQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK---TVDHL 460 (594)
Q Consensus 386 ~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~---~~~~~ 460 (594)
.+++..+..+. |+.++|+..|++|+..-.+. ..-..+++.+|..+...|++++|..++++++...|+ +.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~---~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~--- 75 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSG---ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNA--- 75 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccH---
Confidence 35667777764 89999999999999842221 113678999999999999999999999999998888 55
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 007648 461 ASIWCEWAEMELRHKNFKGALELMRRATAE 490 (594)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 490 (594)
.+...++..+...|+.++|..++-.++..
T Consensus 76 -~l~~f~Al~L~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 76 -ALRVFLALALYNLGRPKEALEWLLEALAE 104 (120)
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77888888888999999999999888753
No 180
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=0.024 Score=60.67 Aligned_cols=195 Identities=10% Similarity=0.128 Sum_probs=120.5
Q ss_pred cCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHh----ccCCCCCchhHHHHHH--HHHHHHHhcCCChHHHHHHHHHH
Q 007648 39 EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSI----VKNLPITHPEYETLNN--TFERALVTMHKMPRIWIMYLETL 112 (594)
Q Consensus 39 ~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~----~~~~~~~~~~~~~A~~--~~~~al~~~P~~~~lw~~y~~~~ 112 (594)
.|+-+.|.+.. +.+ .|-.+|-..+.++.+. +..+|. |....|+. .+++|.. +|+..+. ..+-..
T Consensus 741 iG~MD~AfksI----~~I-kS~~vW~nmA~McVkT~RLDVAkVCl--Ghm~~aRgaRAlR~a~q-~~~e~ea--kvAvLA 810 (1416)
T KOG3617|consen 741 IGSMDAAFKSI----QFI-KSDSVWDNMASMCVKTRRLDVAKVCL--GHMKNARGARALRRAQQ-NGEEDEA--KVAVLA 810 (1416)
T ss_pred eccHHHHHHHH----HHH-hhhHHHHHHHHHhhhhccccHHHHhh--hhhhhhhhHHHHHHHHh-CCcchhh--HHHHHH
Confidence 37777766433 322 3678999999988653 112343 44454443 4455543 4543343 333444
Q ss_pred HhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHH-HHHHHHHhcccHHHHHH
Q 007648 113 TSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIE-DFIEFLVKSKLWQEAAE 191 (594)
Q Consensus 113 ~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~-~~~~~~~~~~~~~~a~~ 191 (594)
+..|-+++|..+|.+.-+ +..+..+++..|.. .+|.++-+.-=+++-.++. .|++.+...++...|++
T Consensus 811 ieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w-~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR----------YDLLNKLYQSQGMW-SEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccH-HHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHH
Confidence 556778999999988644 33455666777777 7777665433333333332 56777888899999999
Q ss_pred HHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHH
Q 007648 192 RLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDI 271 (594)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~ 271 (594)
.|++.-. + -.+..+.+..+|..+ +..++ .-.+ +.+|-=.|++++..|+.+.|+..
T Consensus 880 yyEK~~~----------h----afev~rmL~e~p~~~-----e~Yv~----~~~d--~~L~~WWgqYlES~GemdaAl~~ 934 (1416)
T KOG3617|consen 880 YYEKAGV----------H----AFEVFRMLKEYPKQI-----EQYVR----RKRD--ESLYSWWGQYLESVGEMDAALSF 934 (1416)
T ss_pred HHHhcCC----------h----HHHHHHHHHhChHHH-----HHHHH----hccc--hHHHHHHHHHHhcccchHHHHHH
Confidence 9988641 1 122335556666431 12222 2222 46888889999999999999999
Q ss_pred HHHHHhhh
Q 007648 272 FEEGMMTV 279 (594)
Q Consensus 272 ~~~al~~~ 279 (594)
|..|-+.+
T Consensus 935 Y~~A~D~f 942 (1416)
T KOG3617|consen 935 YSSAKDYF 942 (1416)
T ss_pred HHHhhhhh
Confidence 99887654
No 181
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=6.7e-05 Score=73.88 Aligned_cols=120 Identities=13% Similarity=0.053 Sum_probs=98.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccC----CChh-------hHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHh
Q 007648 428 AFAKLYETYKDIANARVIFDKAVQVNY----KTVD-------HLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVR 496 (594)
Q Consensus 428 ~~a~~~~~~~~~~~A~~~~~kal~~~p----~~~~-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 496 (594)
.-|+.+.+.|++..|..-|++|+..-+ .+++ ..+.++++++.++++++.+..|++.-.++|...|+
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~--- 289 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN--- 289 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC---
Confidence 336677889999999999999887432 1111 24457888999999999999999999999999995
Q ss_pred hhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhh
Q 007648 497 RRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHV 567 (594)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~ 567 (594)
++.....-+..+..+|+++.|+..|++|+++.|+|..+-..++.+-.+.-.+++
T Consensus 290 -----------------N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~ 343 (397)
T KOG0543|consen 290 -----------------NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEE 343 (397)
T ss_pred -----------------chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 567788889999999999999999999999999999988888887665544433
No 182
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.02 E-value=4.7e-06 Score=52.35 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=31.9
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHHhchhhhhhh
Q 007648 537 VYERILDLRIATPQIIINYALLLEVWTLLHVFLL 570 (594)
Q Consensus 537 ~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~~ 570 (594)
+|+|||+++|+++.+|.++|.++...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4899999999999999999999999999999864
No 183
>PRK15331 chaperone protein SicA; Provisional
Probab=98.02 E-value=2.2e-05 Score=68.16 Aligned_cols=90 Identities=6% Similarity=-0.163 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHH
Q 007648 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (594)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (594)
+..+.++.-..+.|++++|..+|+-....+|. ++++|+.++-++..+|++++|...|..|
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~--------------------n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A 97 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY--------------------NPDYTMGLAAVCQLKKQFQKACDLYAVA 97 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777677899999999999999999994 6799999999999999999999999999
Q ss_pred HhccCCchHHHHHHHHHHHHhchhhhhhhc
Q 007648 542 LDLRIATPQIIINYALLLEVWTLLHVFLLH 571 (594)
Q Consensus 542 l~~~P~~~~~~~~~~~~~~~~g~~~~a~~~ 571 (594)
..+.+++|....+.|.++...|+...|+.+
T Consensus 98 ~~l~~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 98 FTLLKNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HHcccCCCCccchHHHHHHHhCCHHHHHHH
Confidence 999999999999999999999999999864
No 184
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.02 E-value=1.2e-05 Score=54.18 Aligned_cols=42 Identities=19% Similarity=0.445 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHH
Q 007648 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAE 469 (594)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~ 469 (594)
.+|..+|..+...|++++|+++|+++++.+|+++ .+|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~----~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDP----EAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH----HHHHHhhh
Confidence 6899999999999999999999999999999999 99998874
No 185
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.98 E-value=0.0015 Score=62.49 Aligned_cols=160 Identities=12% Similarity=0.054 Sum_probs=106.1
Q ss_pred CHHHHHHHHH-HHHcCChhHHHHHHHHHHHhCCCChH-----HHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcC
Q 007648 26 SLKLWWRYLV-AKREAPFKKRFVIYERALKALPGSYK-----LWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMH 99 (594)
Q Consensus 26 ~~~~w~~~~~-~~~~~~~~~a~~~~e~al~~~P~s~~-----lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P 99 (594)
+.+.+..-+. ...+|+++.|+..|++++..+|.++- +|+.++- ...++++.|+..|++.++.+|
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ay----------y~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAY----------YKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH----------HhcCCHHHHHHHHHHHHHhCc
Confidence 4444433333 44589999999999999999998853 3433333 345889999999999999999
Q ss_pred CChH---HHHHHHHHHHhcc---------------c---HHHHHHHHHHHHHhCCCCCH-HHHHH--------------H
Q 007648 100 KMPR---IWIMYLETLTSQK---------------F---ITKARRTFDRALCALPVTQH-DRIWE--------------I 143 (594)
Q Consensus 100 ~~~~---lw~~y~~~~~~~~---------------~---~~~A~~~~~ral~~~p~~~~-~~~w~--------------~ 143 (594)
+++. +++..|......+ + ...|...|++.++..|++.. ..... .
T Consensus 101 ~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ 180 (243)
T PRK10866 101 THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELS 180 (243)
T ss_pred CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 8775 3444443321111 2 35677899999999998632 11111 1
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHhhCCCCHH---H---HHHHHHhcccHHHHHHHHHHh
Q 007648 144 YLRFVEQEGIPIETSLRVYRRYLKYDPSHIE---D---FIEFLVKSKLWQEAAERLASV 196 (594)
Q Consensus 144 ~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~---~---~~~~~~~~~~~~~a~~~~~~~ 196 (594)
.+.++.+.|.+ .-|+.-++.+++..|+.+. . ....+...|..++|.+....+
T Consensus 181 ia~~Y~~~~~y-~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAY-VAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCch-HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 23345556777 7788888888888887663 2 234566777777777765433
No 186
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.97 E-value=0.0014 Score=58.99 Aligned_cols=198 Identities=16% Similarity=0.146 Sum_probs=129.2
Q ss_pred CChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHH
Q 007648 40 APFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFIT 119 (594)
Q Consensus 40 ~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~ 119 (594)
.+-++|.-.|||++- -+|..+|- -|+--|.++|.+.|+-|.++.-++-.+...|+++
T Consensus 60 ~~eeRA~l~fERGvl--YDSlGL~~---------------------LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fd 116 (297)
T COG4785 60 TDEERAQLLFERGVL--YDSLGLRA---------------------LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 116 (297)
T ss_pred ChHHHHHHHHHhcch--hhhhhHHH---------------------HHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccch
Confidence 456789999999983 45778873 4667799999999999999998888888999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHHH--HHHHHhcccHHHHHHHHHHhh
Q 007648 120 KARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDF--IEFLVKSKLWQEAAERLASVL 197 (594)
Q Consensus 120 ~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~--~~~~~~~~~~~~a~~~~~~~~ 197 (594)
.|.+.|+..++++|..+. .....-+.++ --|++ .-|.+-+.+.-+.+|+++-.- .=+-.+.-++.+|...+.+=-
T Consensus 117 aa~eaFds~~ELDp~y~Y-a~lNRgi~~Y-Y~gR~-~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~ 193 (297)
T COG4785 117 AAYEAFDSVLELDPTYNY-AHLNRGIALY-YGGRY-KLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRA 193 (297)
T ss_pred HHHHHhhhHhccCCcchH-HHhccceeee-ecCch-HhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 999999999999998521 1111111121 23667 778888888888899998522 222223446667766543221
Q ss_pred cCcccccccccchHHHHHHHH--HHHhhcccccccCcHHHHHHHHHhhccch------hHHHHHHHHHHHHHhccHHHHH
Q 007648 198 NDDQFYSIKGKTKHRLWLELC--DLLTTHATEISGLNVDAIIRGGIRKFTDE------VGRLWTSLADYYIRRELFEKAR 269 (594)
Q Consensus 198 ~~~~~~~~~~~~~~~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~------~~~~~~~la~~~~~~g~~~~A~ 269 (594)
+ +++-+.|--.+ -++.. ...+.+++++.....++ ..+.++-+|..+...|+.+.|.
T Consensus 194 ~---------~~d~e~WG~~iV~~yLgk-------iS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~ 257 (297)
T COG4785 194 E---------KSDKEQWGWNIVEFYLGK-------ISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEAT 257 (297)
T ss_pred H---------hccHhhhhHHHHHHHHhh-------ccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 1 12223343211 11111 11223343333222211 2467888899999999999999
Q ss_pred HHHHHHHhhh
Q 007648 270 DIFEEGMMTV 279 (594)
Q Consensus 270 ~~~~~al~~~ 279 (594)
.+|+-++...
T Consensus 258 ~LfKLaiann 267 (297)
T COG4785 258 ALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHh
Confidence 9999998753
No 187
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.97 E-value=8.6e-05 Score=65.64 Aligned_cols=140 Identities=13% Similarity=0.026 Sum_probs=99.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChhhHHH-HHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhH
Q 007648 431 KLYETYKDIANARVIFDKAVQVNYKTVDHLAS-IWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQM 509 (594)
Q Consensus 431 ~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 509 (594)
+-....|++..|..-|.+||...|..+....+ ++..-+...++++..+.|+.--.+||++.|.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt---------------- 166 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT---------------- 166 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch----------------
Confidence 33446888888888888888888877665544 4555666777888888899888899999884
Q ss_pred HhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhh--hcccCcccchhhhhhhhe
Q 007648 510 KLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFL--LHVPFTFSGLCMFTFFFT 587 (594)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~--~~~~~~~~~~~~~~~~~~ 587 (594)
........+.+|.+..++++|+.-|.+.+.++|..-++.-..+++--.-+...+.+ +....+...=+|+...|.
T Consensus 167 ----y~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlGN~iL~pFG 242 (271)
T KOG4234|consen 167 ----YEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLGNFILSPFG 242 (271)
T ss_pred ----hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 22445566778888888999999999999999988777766666654444444443 334445555556666666
Q ss_pred eec
Q 007648 588 VSC 590 (594)
Q Consensus 588 ~~~ 590 (594)
+|+
T Consensus 243 lSt 245 (271)
T KOG4234|consen 243 LST 245 (271)
T ss_pred ccc
Confidence 553
No 188
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.85 E-value=0.0025 Score=59.29 Aligned_cols=153 Identities=12% Similarity=0.122 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHH-HHHHH
Q 007648 102 PRIWIMYLETLTSQKFITKARRTFDRALCALPVTQ-HDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIE-DFIEF 179 (594)
Q Consensus 102 ~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~-~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~-~~~~~ 179 (594)
+..++..|......|++..|...|++.+...|.+. ....+..++......|++ ..|+..|++.++..|.++. .++.+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y-~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDY-EEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-H-HHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCCCCcchhhHHH
Confidence 44555666666666777777777777776666532 133444444444556666 6777777777777776552 11110
Q ss_pred H----------------HhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhh
Q 007648 180 L----------------VKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRK 243 (594)
Q Consensus 180 ~----------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (594)
. ...+...+|...|+.++ ..+|++....++...+......
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li------------------------~~yP~S~y~~~A~~~l~~l~~~ 139 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI------------------------KRYPNSEYAEEAKKRLAELRNR 139 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH------------------------HH-TTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHH------------------------HHCcCchHHHHHHHHHHHHHHH
Confidence 0 01122334444444444 4444431111111111111111
Q ss_pred ccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccc
Q 007648 244 FTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVR 283 (594)
Q Consensus 244 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 283 (594)
...--+..|.+|.+.|.+..|..-|+.+++..|+..
T Consensus 140 ----la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~ 175 (203)
T PF13525_consen 140 ----LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTP 175 (203)
T ss_dssp ----HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSH
T ss_pred ----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCc
Confidence 123346679999999999999999999999999876
No 189
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.78 E-value=0.00084 Score=65.89 Aligned_cols=157 Identities=15% Similarity=0.117 Sum_probs=109.3
Q ss_pred CChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhH
Q 007648 383 HNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHL 460 (594)
Q Consensus 383 ~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~ 460 (594)
.+.+.....+.++ .++++.|.+.++..-+ .+.+........+|+.++ .-.+.+..|..+|++.....|.++
T Consensus 129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~-~~eD~~l~qLa~awv~l~---~g~e~~~~A~y~f~El~~~~~~t~--- 201 (290)
T PF04733_consen 129 GSLELLALAVQILLKMNRPDLAEKELKNMQQ-IDEDSILTQLAEAWVNLA---TGGEKYQDAFYIFEELSDKFGSTP--- 201 (290)
T ss_dssp TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC-CSCCHHHHHHHHHHHHHH---HTTTCCCHHHHHHHHHHCCS--SH---
T ss_pred CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhccCCCH---
Confidence 4555554444444 4899999999988765 344322111334444443 323469999999999887778888
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCCh-HHHHHHHH
Q 007648 461 ASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNL-ESTRAVYE 539 (594)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~A~~~~~ 539 (594)
.+....+.+.+.+|++++|.+++++|+..+|+ ++..+...+-+....|+. +.+.+..+
T Consensus 202 -~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~--------------------~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 202 -KLLNGLAVCHLQLGHYEEAEELLEEALEKDPN--------------------DPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp -HHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC--------------------HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC--------------------CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 77888888889999999999999999999995 567888888888888988 66788888
Q ss_pred HHHhccCCchHHHHHHHHHHHHhchhhhhhhc
Q 007648 540 RILDLRIATPQIIINYALLLEVWTLLHVFLLH 571 (594)
Q Consensus 540 ~al~~~P~~~~~~~~~~~~~~~~g~~~~a~~~ 571 (594)
+.-+.+|++|-+-. +..+...|+++...
T Consensus 261 qL~~~~p~h~~~~~----~~~~~~~FD~~~~k 288 (290)
T PF04733_consen 261 QLKQSNPNHPLVKD----LAEKEAEFDRAVAK 288 (290)
T ss_dssp HCHHHTTTSHHHHH----HHHHHHHHHHHHHC
T ss_pred HHHHhCCCChHHHH----HHHHHHHHHHHHHh
Confidence 88888999985542 33455566665443
No 190
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.75 E-value=0.00054 Score=64.44 Aligned_cols=102 Identities=13% Similarity=0.060 Sum_probs=61.8
Q ss_pred HhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhc
Q 007648 434 ETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHK 513 (594)
Q Consensus 434 ~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 513 (594)
...|++..|.+.|..-++.-|+++.+- ...+-+|+....+|+++.|..+|.++++..|... .
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~-nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~-----------------K 213 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTP-NAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP-----------------K 213 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccc-hhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC-----------------C
Confidence 346666666666666666666654322 3444456666666666666666666666666310 1
Q ss_pred cHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHH
Q 007648 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIII 553 (594)
Q Consensus 514 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~ 553 (594)
.|+..+.++....++|+.++|+..|++.++..|+.+.+-.
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 3455666666666666677777777776666666665443
No 191
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.71 E-value=0.00028 Score=59.66 Aligned_cols=104 Identities=16% Similarity=0.258 Sum_probs=72.3
Q ss_pred cchHhHHHHhhCC---CCHHHHHHHHHHHH----c-CChhHHHHHHHHHHHhCCCC---------hHHHHHHHHHHHHhc
Q 007648 12 DDLLYEEELLRNP---FSLKLWWRYLVAKR----E-APFKKRFVIYERALKALPGS---------YKLWHAYLIERLSIV 74 (594)
Q Consensus 12 ~~~~~e~~l~~~P---~~~~~w~~~~~~~~----~-~~~~~a~~~~e~al~~~P~s---------~~lW~~~~~~~~~~~ 74 (594)
....||..|.... .-.+.|.+||++.. . +.-.....++++++..+..+ +.+|..|+.+.
T Consensus 4 ~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~---- 79 (126)
T PF08311_consen 4 QRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS---- 79 (126)
T ss_dssp HHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB----
T ss_pred HHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc----
Confidence 3456777776655 44588888888664 1 44567777888888876543 36777776542
Q ss_pred cCCCCCchhHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 007648 75 KNLPITHPEYETLNNTFERALVT--MHKMPRIWIMYLETLTSQKFITKARRTFDRAL 129 (594)
Q Consensus 75 ~~~~~~~~~~~~A~~~~~~al~~--~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral 129 (594)
+.+..+|..+... .-..+..|..+|.++...|++++|..+|+++|
T Consensus 80 ----------~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 80 ----------SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp ----------SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ----------cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 2667777777764 35677888888888888888888888888765
No 192
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.64 E-value=0.00067 Score=63.84 Aligned_cols=95 Identities=11% Similarity=0.022 Sum_probs=81.7
Q ss_pred hcCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhc
Q 007648 395 FEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRH 474 (594)
Q Consensus 395 ~~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~ 474 (594)
..|++..|...|..-|+..|... ..++++++||+.+..+|+++.|..+|.++.+-.|+++-+- +..+.+|.++.+.
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~---~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KAp-dallKlg~~~~~l 228 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNST---YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAP-DALLKLGVSLGRL 228 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCc---ccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCCh-HHHHHHHHHHHHh
Confidence 34899999999999999765432 3678999999999999999999999999999766654222 6788899999999
Q ss_pred CChHHHHHHHHHHhcCCch
Q 007648 475 KNFKGALELMRRATAEPSV 493 (594)
Q Consensus 475 ~~~~~A~~~~~~al~~~p~ 493 (594)
|+.++|+.+|+++++..|+
T Consensus 229 ~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 229 GNTDEACATLQQVIKRYPG 247 (262)
T ss_pred cCHHHHHHHHHHHHHHCCC
Confidence 9999999999999999996
No 193
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.0021 Score=59.77 Aligned_cols=151 Identities=13% Similarity=0.086 Sum_probs=113.0
Q ss_pred ChHHHHHHHHH-h--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhh-
Q 007648 384 NVEQWHRRVKI-F--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDH- 459 (594)
Q Consensus 384 ~~~~~~~~~~~-~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~- 459 (594)
+..+|..++.+ + .+++++|.....+.. ..++...-.++..+....+-|++.+++..+++.+..-.
T Consensus 106 sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-----------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQ 174 (299)
T KOG3081|consen 106 SNLIDLLLAAIIYMHDGDFDEALKALHLGE-----------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQ 174 (299)
T ss_pred hhHHHHHHhhHHhhcCCChHHHHHHHhccc-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 33355544333 2 378888888776622 23444555566778889999999999999887665533
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHH
Q 007648 460 LASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYE 539 (594)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 539 (594)
+...|+.++. ..+.+..|--+|+...+..|. -+.+.++.+.+...+|++++|..+++
T Consensus 175 LA~awv~la~---ggek~qdAfyifeE~s~k~~~--------------------T~~llnG~Av~~l~~~~~eeAe~lL~ 231 (299)
T KOG3081|consen 175 LAQAWVKLAT---GGEKIQDAFYIFEELSEKTPP--------------------TPLLLNGQAVCHLQLGRYEEAESLLE 231 (299)
T ss_pred HHHHHHHHhc---cchhhhhHHHHHHHHhcccCC--------------------ChHHHccHHHHHHHhcCHHHHHHHHH
Confidence 5566776663 455689999999999985542 35677777888889999999999999
Q ss_pred HHHhccCCchHHHHHHHHHHHHhchhhhh
Q 007648 540 RILDLRIATPQIIINYALLLEVWTLLHVF 568 (594)
Q Consensus 540 ~al~~~P~~~~~~~~~~~~~~~~g~~~~a 568 (594)
.||..+|++|++..|+.-+-...|.-.++
T Consensus 232 eaL~kd~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 232 EALDKDAKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhCCChHH
Confidence 99999999999999998888778866444
No 194
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.63 E-value=0.08 Score=52.20 Aligned_cols=126 Identities=20% Similarity=0.157 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhH
Q 007648 250 RLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIR 329 (594)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (594)
..-..-+..+.+.|+..++-.+++.+-+..|... ++..|....-. +
T Consensus 264 Paav~AAralf~d~~~rKg~~ilE~aWK~ePHP~----ia~lY~~ar~g----------d-------------------- 309 (531)
T COG3898 264 PAAVVAARALFRDGNLRKGSKILETAWKAEPHPD----IALLYVRARSG----------D-------------------- 309 (531)
T ss_pred hHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH----HHHHHHHhcCC----------C--------------------
Confidence 3456667788889999999999999999887653 55555432110 0
Q ss_pred hhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHh--cCCchhHHHHHH
Q 007648 330 LDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF--EGNPTKQILTYT 407 (594)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~y~ 407 (594)
+..+ ...+.++ .....|+|.++.+..+..- .|++..|+..-+
T Consensus 310 ---------------------ta~d---RlkRa~~------------L~slk~nnaes~~~va~aAlda~e~~~ARa~Ae 353 (531)
T COG3898 310 ---------------------TALD---RLKRAKK------------LESLKPNNAESSLAVAEAALDAGEFSAARAKAE 353 (531)
T ss_pred ---------------------cHHH---HHHHHHH------------HHhcCccchHHHHHHHHHHHhccchHHHHHHHH
Confidence 0001 1122222 2445788888887765543 478999998888
Q ss_pred HHHhccCCCcccCCchHHHHHHHHHHH-hcCCHHHHHHHHHHHHhc
Q 007648 408 EAVRTVDPMKAVGKPHTLWVAFAKLYE-TYKDIANARVIFDKAVQV 452 (594)
Q Consensus 408 ~Ai~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~kal~~ 452 (594)
.+... .| -..+++-++++++ ..||-.++|..+-++++.
T Consensus 354 aa~r~-~p------res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 354 AAARE-AP------RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHhhh-Cc------hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 88775 44 3578888999988 569999999999999974
No 195
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.60 E-value=0.0008 Score=59.12 Aligned_cols=94 Identities=18% Similarity=0.073 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCC--CCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcc---
Q 007648 42 FKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLP--ITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQK--- 116 (594)
Q Consensus 42 ~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~--- 116 (594)
++.|++-++.....+|.+++.+..|.....+...... ....-+++|+.-|+.||.++|+.......++..+..++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 5679999999999999999999998877644311000 11245789999999999999999998888998887754
Q ss_pred --------cHHHHHHHHHHHHHhCCCC
Q 007648 117 --------FITKARRTFDRALCALPVT 135 (594)
Q Consensus 117 --------~~~~A~~~~~ral~~~p~~ 135 (594)
.+++|...|++|+...|.+
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 1455666666666666654
No 196
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.59 E-value=0.0016 Score=55.44 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCh
Q 007648 28 KLWWRYLVAKREAPFKKRFVIYERALKALPGS-----YKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMP 102 (594)
Q Consensus 28 ~~w~~~~~~~~~~~~~~a~~~~e~al~~~P~s-----~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~ 102 (594)
+.+....+...+|++..|++.|+.....+|.+ +.+|+.|+-+. .++++.|+..+++-++++|.++
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~----------~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK----------QGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH----------ccCHHHHHHHHHHHHHhCCCCC
Confidence 34444444556888999999999988888865 36777776653 4788889999999999888887
Q ss_pred H
Q 007648 103 R 103 (594)
Q Consensus 103 ~ 103 (594)
.
T Consensus 82 ~ 82 (142)
T PF13512_consen 82 N 82 (142)
T ss_pred C
Confidence 6
No 197
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.59 E-value=0.00026 Score=71.53 Aligned_cols=68 Identities=12% Similarity=0.070 Sum_probs=47.4
Q ss_pred ccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCch---HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007648 379 RQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPH---TLWVAFAKLYETYKDIANARVIFDKAVQV 452 (594)
Q Consensus 379 ~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~---~~~~~~a~~~~~~~~~~~A~~~~~kal~~ 452 (594)
..+|+++.+|+.++..+. |++++|+..|++|+.. +|+ .. .+|+++|.++..+|++++|+..+++|++.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-~Pd-----~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-NPN-----PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCC-----chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356777777777776663 6777777777777775 442 33 34777777777777777777777777765
No 198
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.58 E-value=0.00025 Score=71.59 Aligned_cols=68 Identities=16% Similarity=0.083 Sum_probs=62.1
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHH---HHHHHHHHHhcCChHHHHHHHHHHhcCCc
Q 007648 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASI---WCEWAEMELRHKNFKGALELMRRATAEPS 492 (594)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~---~~~~~~~~~~~~~~~~A~~~~~~al~~~p 492 (594)
.+...|+++|..+...|++++|+..|++||+++|+++ .. |+.++.++..+|++++|+..+++|++..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a----eA~~A~yNLAcaya~LGr~dEAla~LrrALelsn 143 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD----EAQAAYYNKACCHAYREEGKKAADCLRTALRDYN 143 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 4789999999999999999999999999999999997 54 99999999999999999999999999743
No 199
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.58 E-value=0.00033 Score=53.88 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=56.3
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---cCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQV---NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE 490 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 490 (594)
...++..+|.++...|++++|+..|++|+.+ .+++.......+..+|.++...|++++|.+.+++++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4677889999999999999999999999975 33332234577889999999999999999999999865
No 200
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.57 E-value=0.16 Score=54.03 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=34.4
Q ss_pred CCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHH
Q 007648 79 ITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTF 125 (594)
Q Consensus 79 ~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~ 125 (594)
+..|+++.|...++ .++.-|+...+|+.++++....|+.--|.+.|
T Consensus 455 id~~df~ra~afle-s~~~~~da~amw~~laelale~~nl~iaercf 500 (1636)
T KOG3616|consen 455 IDDGDFDRATAFLE-SLEMGPDAEAMWIRLAELALEAGNLFIAERCF 500 (1636)
T ss_pred cccCchHHHHHHHH-hhccCccHHHHHHHHHHHHHHhccchHHHHHH
Confidence 45789999977554 56678999999999999988877654444443
No 201
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.57 E-value=0.012 Score=58.00 Aligned_cols=128 Identities=12% Similarity=-0.034 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhh
Q 007648 423 HTLWVAFAKLYETYKDIANARVIFDKAVQV--NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (594)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 500 (594)
..++-++|+++.-.|+++.|.+.|++++.+ .-.+-..=....+.++..+.-.+.+++|+..+.|-+.+..+-. -+++
T Consensus 235 RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~-DriG 313 (639)
T KOG1130|consen 235 RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE-DRIG 313 (639)
T ss_pred HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhh
Confidence 356777888888899999999999997753 2222212124567777777667789999999998887754300 0110
Q ss_pred ccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhcc-----CC-chHHHHHHHHHHHHhch
Q 007648 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR-----IA-TPQIIINYALLLEVWTL 564 (594)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----P~-~~~~~~~~~~~~~~~g~ 564 (594)
....+-.++..+..+|.-++|....++++++. |. ...+..|+..+....|.
T Consensus 314 -------------e~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 314 -------------ELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQ 370 (639)
T ss_pred -------------hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence 22445667888888999999999998888742 22 23466788888777763
No 202
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.56 E-value=0.0024 Score=56.13 Aligned_cols=149 Identities=12% Similarity=0.120 Sum_probs=112.9
Q ss_pred cCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhccc
Q 007648 39 EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVT-MHKMPRIWIMYLETLTSQKF 117 (594)
Q Consensus 39 ~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~P~~~~lw~~y~~~~~~~~~ 117 (594)
.=|+++...-..+.+..-|.... -...++.. ...|++.+|+..|++++.- .-+++.+...+++.....++
T Consensus 69 ~ldP~R~~Rea~~~~~~ApTvqn-r~rLa~al--------~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~ 139 (251)
T COG4700 69 KLDPERHLREATEELAIAPTVQN-RYRLANAL--------AELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE 139 (251)
T ss_pred hcChhHHHHHHHHHHhhchhHHH-HHHHHHHH--------HHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc
Confidence 45555555555566666675433 22334433 3458999999999999985 56888999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHH--HHHHHHHhcccHHHHHHHHHH
Q 007648 118 ITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIE--DFIEFLVKSKLWQEAAERLAS 195 (594)
Q Consensus 118 ~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~--~~~~~~~~~~~~~~a~~~~~~ 195 (594)
+..|...++...+.+|....+.--..++..+...|.+ .+|+..|+-++...|+... .|..++.++|+.+++..-+..
T Consensus 140 ~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~-a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 140 FAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKY-ADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCc-hhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 9999999999999888644445556777888888999 8999999999999988764 677889999988887766655
Q ss_pred hh
Q 007648 196 VL 197 (594)
Q Consensus 196 ~~ 197 (594)
++
T Consensus 219 v~ 220 (251)
T COG4700 219 VV 220 (251)
T ss_pred HH
Confidence 55
No 203
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.51 E-value=0.0069 Score=54.66 Aligned_cols=105 Identities=16% Similarity=0.064 Sum_probs=73.1
Q ss_pred hhccCCCChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 007648 377 LLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNY 454 (594)
Q Consensus 377 ~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p 454 (594)
++...|.-++.+..+|..+ .|+++.|.+.|...++. +|. +..+..+-|....=-|++.-|.+-+.+--+.+|
T Consensus 91 aLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL-Dp~-----y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~ 164 (297)
T COG4785 91 ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-DPT-----YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDP 164 (297)
T ss_pred hhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-CCc-----chHHHhccceeeeecCchHhhHHHHHHHHhcCC
Confidence 5788898888888877766 38899999999888874 553 344444444433346888888888888888899
Q ss_pred CChhhHHHHHHHHHHHHHhcCChHHHHH-HHHHHhcCCc
Q 007648 455 KTVDHLASIWCEWAEMELRHKNFKGALE-LMRRATAEPS 492 (594)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~al~~~p 492 (594)
++| +..+|+.+.. +.-++.+|+. +.+|+.+.+.
T Consensus 165 ~DP--fR~LWLYl~E---~k~dP~~A~tnL~qR~~~~d~ 198 (297)
T COG4785 165 NDP--FRSLWLYLNE---QKLDPKQAKTNLKQRAEKSDK 198 (297)
T ss_pred CCh--HHHHHHHHHH---hhCCHHHHHHHHHHHHHhccH
Confidence 988 5567877653 3345666554 4556665543
No 204
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.50 E-value=0.0005 Score=60.38 Aligned_cols=96 Identities=11% Similarity=0.035 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcC----------ChHHHHHHHHHHhcCCchhHhhhhhccCChhhh
Q 007648 439 IANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK----------NFKGALELMRRATAEPSVEVRRRVAADGNEPVQ 508 (594)
Q Consensus 439 ~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~----------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 508 (594)
++.|++.++.+...+|.++ +.+..||-.++.+. -+++|+.-|+.|+.++|+.-
T Consensus 7 FE~ark~aea~y~~nP~Da----dnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h------------- 69 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDA----DNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH------------- 69 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H----HHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H-------------
T ss_pred HHHHHHHHHHHHHhCcHhH----HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH-------------
Confidence 6789999999999999999 77788887665432 25677888888888999621
Q ss_pred HHhhccHhhHHHHHHHHHH-----------hCChHHHHHHHHHHHhccCCchHHHHHHHHH
Q 007648 509 MKLHKSLRLWTFYVDLEES-----------LGNLESTRAVYERILDLRIATPQIIINYALL 558 (594)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~-----------~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~ 558 (594)
..+..+|..+.. ...|++|..+|++|.+.+|++...+..+...
T Consensus 70 -------dAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 70 -------DALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp -------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 222222222222 2347899999999999999998777665443
No 205
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.48 E-value=0.0074 Score=56.43 Aligned_cols=172 Identities=9% Similarity=-0.008 Sum_probs=118.2
Q ss_pred HHHHHHHHH--hcCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHH
Q 007648 386 EQWHRRVKI--FEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASI 463 (594)
Q Consensus 386 ~~~~~~~~~--~~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~ 463 (594)
..|+.-|.- ..|++++|...|+..... .|... ....+-+.++..+.+.++++.|+...++-++..|.++.+= -+
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-~p~s~--~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~ 110 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSR-HPFSP--YSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YA 110 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCc--ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HH
Confidence 445544433 348999999999998775 44322 2578889999999999999999999999999999998321 12
Q ss_pred HHHHHHHHHh-----cCC---hHHHHHHHHHHhcCCchhH-----hhhhhccCChhhhHHhhccHh--hHHHHHHHHHHh
Q 007648 464 WCEWAEMELR-----HKN---FKGALELMRRATAEPSVEV-----RRRVAADGNEPVQMKLHKSLR--LWTFYVDLEESL 528 (594)
Q Consensus 464 ~~~~~~~~~~-----~~~---~~~A~~~~~~al~~~p~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 528 (594)
.+..|..... ..+ ..+|..-|+..+...|+.- ..++. .+.+.. .=+.-+.++.+.
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~----------~~~d~LA~~Em~IaryY~kr 180 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIV----------KLNDALAGHEMAIARYYLKR 180 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHH----------HHHHHHHHHHHHHHHHHHHh
Confidence 2333332221 122 3467778888999999732 11111 001111 124557788999
Q ss_pred CChHHHHHHHHHHHhccCCchH---HHHHHHHHHHHhchhhhhhhc
Q 007648 529 GNLESTRAVYERILDLRIATPQ---IIINYALLLEVWTLLHVFLLH 571 (594)
Q Consensus 529 g~~~~A~~~~~~al~~~P~~~~---~~~~~~~~~~~~g~~~~a~~~ 571 (594)
|.+-.|..-++..++.-|+.+. ++..+...+...|..++|-..
T Consensus 181 ~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 181 GAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred cChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 9999999999999998887764 556777788889988888533
No 206
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.46 E-value=0.00013 Score=45.81 Aligned_cols=33 Identities=9% Similarity=0.006 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhcccHHHHH
Q 007648 90 TFERALVTMHKMPRIWIMYLETLTSQKFITKAR 122 (594)
Q Consensus 90 ~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~ 122 (594)
.|++|++.+|+++..|..+|.++...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 379999999999999999999999999999886
No 207
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.45 E-value=0.003 Score=53.44 Aligned_cols=113 Identities=16% Similarity=0.248 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHhCC---CChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCC---------hHHHHHHHH
Q 007648 43 KKRFVIYERALKALP---GSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKM---------PRIWIMYLE 110 (594)
Q Consensus 43 ~~a~~~~e~al~~~P---~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~---------~~lw~~y~~ 110 (594)
+..++.|+..+..+. +-.+.|..|+.+..+... ..+.-.....+++++++...++ ..+|+.|+.
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p----~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~ 77 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYP----SGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD 77 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCT----TCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCC----CCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH
Confidence 456788999998776 347999999999876632 2345567778999999876433 468888886
Q ss_pred HHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 007648 111 TLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYL 166 (594)
Q Consensus 111 ~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l 166 (594)
+.. .++.+|.......=+..+..+|..++.+++..|+. ++|.++|+.++
T Consensus 78 ~~~------~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~-~~A~~I~~~Gi 126 (126)
T PF08311_consen 78 LSS------DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNF-KKADEIYQLGI 126 (126)
T ss_dssp TBS------HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-H-HHHHHHHHHHH
T ss_pred Hcc------CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCH-HHHHHHHHhhC
Confidence 433 78888888877654445688999999999999999 99999998764
No 208
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.13 Score=50.05 Aligned_cols=222 Identities=14% Similarity=0.128 Sum_probs=109.7
Q ss_pred CCHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChH-
Q 007648 25 FSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPR- 103 (594)
Q Consensus 25 ~~~~~w~~~~~~~~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~- 103 (594)
.+.+.|+.+..+- -|++++|..+|.-+.+...-..++|...+--. .-.|.|.+|.++-++| |++|-
T Consensus 57 ~~~~lWia~C~fh-LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~--------FyLg~Y~eA~~~~~ka----~k~pL~ 123 (557)
T KOG3785|consen 57 DSLQLWIAHCYFH-LGDYEEALNVYTFLMNKDDAPAELGVNLACCK--------FYLGQYIEAKSIAEKA----PKTPLC 123 (557)
T ss_pred HHHHHHHHHHHHh-hccHHHHHHHHHHHhccCCCCcccchhHHHHH--------HHHHHHHHHHHHHhhC----CCChHH
Confidence 4667888877742 48999999999999886555677787654221 1125566665544433 23222
Q ss_pred -----------------------------HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-HHcCC
Q 007648 104 -----------------------------IWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFV-EQEGI 153 (594)
Q Consensus 104 -----------------------------lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~-~~~~~ 153 (594)
=...++.+....-.+++|..+|.|.+.-+|.- .....|..++ ..+.-
T Consensus 124 ~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey---~alNVy~ALCyyKlDY 200 (557)
T KOG3785|consen 124 IRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY---IALNVYMALCYYKLDY 200 (557)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh---hhhHHHHHHHHHhcch
Confidence 12222223222334566777777777665542 1112222222 23333
Q ss_pred chHHHHHHHHHHHhhCCCCHHHH--H---HHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhccccc
Q 007648 154 PIETSLRVYRRYLKYDPSHIEDF--I---EFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEI 228 (594)
Q Consensus 154 ~~~~a~~~~~~~l~~~p~~~~~~--~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 228 (594)
+ +-+.+++.-.++..|+++-+. . .+-.-.|+..++. .+.+..+- .+.+. ++.++-+|.-.+
T Consensus 201 y-dvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E--~k~ladN~-------~~~~~----f~~~l~rHNLVv 266 (557)
T KOG3785|consen 201 Y-DVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDE--KKELADNI-------DQEYP----FIEYLCRHNLVV 266 (557)
T ss_pred h-hhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHH--HHHHHhcc-------cccch----hHHHHHHcCeEE
Confidence 4 555566666666667665311 0 0111122221111 11111000 00000 111122222110
Q ss_pred --ccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccc
Q 007648 229 --SGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVR 283 (594)
Q Consensus 229 --~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 283 (594)
.+..+-+++-..+... +++.++++.+|.+++++++|..+.++. .|+.+
T Consensus 267 FrngEgALqVLP~L~~~I----PEARlNL~iYyL~q~dVqeA~~L~Kdl---~PttP 316 (557)
T KOG3785|consen 267 FRNGEGALQVLPSLMKHI----PEARLNLIIYYLNQNDVQEAISLCKDL---DPTTP 316 (557)
T ss_pred EeCCccHHHhchHHHhhC----hHhhhhheeeecccccHHHHHHHHhhc---CCCCh
Confidence 0111222222233333 468999999999999999999988864 56554
No 209
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.41 E-value=0.0019 Score=53.12 Aligned_cols=94 Identities=18% Similarity=0.145 Sum_probs=74.5
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhh
Q 007648 433 YETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLH 512 (594)
Q Consensus 433 ~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 512 (594)
.-..|+++.|+..|.++|...|+.+ ++|..-++.+.-+|+.++|..=+.+|+++..+.. +
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~ra----SayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t---------r------- 112 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERA----SAYNNRAQALRLQGDDEEALDDLNKALELAGDQT---------R------- 112 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccch----HhhccHHHHHHHcCChHHHHHHHHHHHHhcCccc---------h-------
Confidence 3457889999999999999999998 8888888888778899999999999998854311 0
Q ss_pred ccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccC
Q 007648 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLRI 546 (594)
Q Consensus 513 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P 546 (594)
.--..+...+-++...|+.+.||.-|++|-++..
T Consensus 113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 0124567778888889999999999999888753
No 210
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.029 Score=53.17 Aligned_cols=49 Identities=12% Similarity=0.155 Sum_probs=34.8
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccch
Q 007648 236 IIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDF 285 (594)
Q Consensus 236 ~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 285 (594)
++....+..|.+ .-....+|-.|....++..|..+|++.-...|....+
T Consensus 32 ~l~s~~Er~p~~-rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qY 80 (459)
T KOG4340|consen 32 LLGSELERSPRS-RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQY 80 (459)
T ss_pred HHHHHHhcCccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH
Confidence 333444444543 2346667888888999999999999998888876543
No 211
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.36 E-value=0.0046 Score=52.62 Aligned_cols=22 Identities=5% Similarity=-0.020 Sum_probs=17.1
Q ss_pred ChHHHHHHHHHHHhccCCchHH
Q 007648 530 NLESTRAVYERILDLRIATPQI 551 (594)
Q Consensus 530 ~~~~A~~~~~~al~~~P~~~~~ 551 (594)
...+|+..|++.++..|+++-+
T Consensus 114 ~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 114 PARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHHHHHHCcCChhH
Confidence 3567888899999999988643
No 212
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.35 E-value=0.00056 Score=60.64 Aligned_cols=92 Identities=11% Similarity=0.023 Sum_probs=77.2
Q ss_pred HhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHH
Q 007648 472 LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI 551 (594)
Q Consensus 472 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 551 (594)
..+|++++|..-|.+||..+|..... . -+.++...+-...++++.+.|+.--.+||+++|..-.+
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e----------~-----rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kA 170 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTE----------E-----RSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKA 170 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHH----------H-----HHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHH
Confidence 46899999999999999999952100 0 12455666777789999999999999999999999999
Q ss_pred HHHHHHHHHHhchhhhhhhcccCcccc
Q 007648 552 IINYALLLEVWTLLHVFLLHVPFTFSG 578 (594)
Q Consensus 552 ~~~~~~~~~~~g~~~~a~~~~~~~~~~ 578 (594)
+.+.+.+|.+...|++|+..|+.+.+-
T Consensus 171 l~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 171 LERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 999999999999999999998876543
No 213
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.35 E-value=0.001 Score=63.79 Aligned_cols=105 Identities=20% Similarity=0.159 Sum_probs=78.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhH
Q 007648 430 AKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQM 509 (594)
Q Consensus 430 a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 509 (594)
|+-|.++|.+++|+++|.+++...|.|| -++...+..+++.+.+..|..=-+.|+.++..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~Np----V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~---------------- 163 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNP----VYHINRALAYLKQKSFAQAEEDCEAAIALDKL---------------- 163 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCc----cchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH----------------
Confidence 5556788889999999999998888888 67777777777888887777777777777552
Q ss_pred HhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHH
Q 007648 510 KLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALL 558 (594)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~ 558 (594)
-...|...+..-..+|+..+|.+-++++|.+.|++-+..-.++.+
T Consensus 164 ----Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 164 ----YVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred ----HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 123445555555667888899999999999988887766555554
No 214
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=97.27 E-value=0.00055 Score=42.43 Aligned_cols=31 Identities=35% Similarity=0.577 Sum_probs=28.9
Q ss_pred CChhHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 007648 40 APFKKRFVIYERALKALPGSYKLWHAYLIER 70 (594)
Q Consensus 40 ~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~ 70 (594)
|+.+.++.+|++++..+|.++++|..|+.++
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 5678999999999999999999999999986
No 215
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.27 E-value=0.035 Score=51.74 Aligned_cols=163 Identities=20% Similarity=0.163 Sum_probs=113.9
Q ss_pred cCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHH-HHHhcCCHHHHHHHHHHHHhccCC-
Q 007648 380 QNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAK-LYETYKDIANARVIFDKAVQVNYK- 455 (594)
Q Consensus 380 ~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~~A~~~~~kal~~~p~- 455 (594)
..+.....+...+.... +++..+...+..++...+. ....+...+. ++...|+++.|...+++++...|.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 163 (291)
T COG0457 90 LLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPD------PDLAEALLALGALYELGDYEEALELYEKALELDPEL 163 (291)
T ss_pred hccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCC------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 45666677777666654 6788888999888874222 1223333344 677899999999999999886663
Q ss_pred ChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHH
Q 007648 456 TVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTR 535 (594)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 535 (594)
.. ........+......++++.|...+.+++...|.. ....+...+..+...|++++|.
T Consensus 164 ~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~a~ 222 (291)
T COG0457 164 NE--LAEALLALGALLEALGRYEEALELLEKALKLNPDD-------------------DAEALLNLGLLYLKLGKYEEAL 222 (291)
T ss_pred cc--hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------------------chHHHHHhhHHHHHcccHHHHH
Confidence 11 11444555555566789999999999999988840 2355667777777788888999
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHHhchhhhhh
Q 007648 536 AVYERILDLRIATPQIIINYALLLEVWTLLHVFL 569 (594)
Q Consensus 536 ~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~ 569 (594)
..+.+++...|.....+...+..+...|.++++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (291)
T COG0457 223 EYYEKALELDPDNAEALYNLALLLLELGRYEEAL 256 (291)
T ss_pred HHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHH
Confidence 9999999988886677777777666555555554
No 216
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.26 E-value=0.24 Score=49.05 Aligned_cols=136 Identities=16% Similarity=0.123 Sum_probs=92.1
Q ss_pred hhccCCCChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH---h
Q 007648 377 LLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAV---Q 451 (594)
Q Consensus 377 ~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal---~ 451 (594)
++++.|+-+.+-..-+..+ .|+..++-.+++.+=+..|. +++|..|. ..+.|+. +.+-++++- .
T Consensus 255 a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-------P~ia~lY~--~ar~gdt--a~dRlkRa~~L~s 323 (531)
T COG3898 255 ANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-------PDIALLYV--RARSGDT--ALDRLKRAKKLES 323 (531)
T ss_pred HhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-------hHHHHHHH--HhcCCCc--HHHHHHHHHHHHh
Confidence 4666777665554444433 47788888888888876432 45655443 3345543 333344432 2
Q ss_pred ccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHh-CC
Q 007648 452 VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESL-GN 530 (594)
Q Consensus 452 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~ 530 (594)
..|++. +-.+..+..-+-.|++..||.--+.+....|- ..++..+++++... |+
T Consensus 324 lk~nna----es~~~va~aAlda~e~~~ARa~Aeaa~r~~pr---------------------es~~lLlAdIeeAetGD 378 (531)
T COG3898 324 LKPNNA----ESSLAVAEAALDAGEFSAARAKAEAAAREAPR---------------------ESAYLLLADIEEAETGD 378 (531)
T ss_pred cCccch----HHHHHHHHHHHhccchHHHHHHHHHHhhhCch---------------------hhHHHHHHHHHhhccCc
Confidence 567777 55555566556678888888888888888883 47788999999886 99
Q ss_pred hHHHHHHHHHHHhccCCch
Q 007648 531 LESTRAVYERILDLRIATP 549 (594)
Q Consensus 531 ~~~A~~~~~~al~~~P~~~ 549 (594)
-.++|.++-++++. |.+|
T Consensus 379 qg~vR~wlAqav~A-PrdP 396 (531)
T COG3898 379 QGKVRQWLAQAVKA-PRDP 396 (531)
T ss_pred hHHHHHHHHHHhcC-CCCC
Confidence 99999999999983 5554
No 217
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.25 E-value=0.047 Score=51.15 Aligned_cols=168 Identities=14% Similarity=0.089 Sum_probs=101.3
Q ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHH-HHH
Q 007648 100 KMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQH-DRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIE-DFI 177 (594)
Q Consensus 100 ~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~-~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~-~~~ 177 (594)
..+..|+.-+...++.|++++|...|++....+|.+.. ...-..++......+++ +.|+...++.+...|.++. .|+
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y-~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEY-DLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccH-HHHHHHHHHHHHhCCCCCChhHH
Confidence 45678888888888899999999999999998887522 22323333333456777 8999999999999998874 332
Q ss_pred HHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHH
Q 007648 178 EFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLAD 257 (594)
Q Consensus 178 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~ 257 (594)
.++.. ...|..+- ++. .-+....+....+..++...|++--..++..-+...... ....=+..|.
T Consensus 111 ~Ylkg-------Ls~~~~i~-~~~---rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~----LA~~Em~Iar 175 (254)
T COG4105 111 YYLKG-------LSYFFQID-DVT---RDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDA----LAGHEMAIAR 175 (254)
T ss_pred HHHHH-------HHHhccCC-ccc---cCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH----HHHHHHHHHH
Confidence 22111 00111110 000 000112234455556666777542222222222211111 1234466799
Q ss_pred HHHHhccHHHHHHHHHHHHhhhcccc
Q 007648 258 YYIRRELFEKARDIFEEGMMTVVTVR 283 (594)
Q Consensus 258 ~~~~~g~~~~A~~~~~~al~~~p~~~ 283 (594)
+|.+.|.+..|..-+++++...|+..
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~y~~t~ 201 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLENYPDTS 201 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhcccccc
Confidence 99999999999999999999977654
No 218
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.01 Score=56.06 Aligned_cols=161 Identities=12% Similarity=-0.028 Sum_probs=112.1
Q ss_pred hhccCCCChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 007648 377 LLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNY 454 (594)
Q Consensus 377 ~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p 454 (594)
..+.+|.+-.....++..+ ..++..|..+|++-....|. ...-.+.+++...+-+.+..|..+.....
T Consensus 36 ~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~------~~qYrlY~AQSLY~A~i~ADALrV~~~~~---- 105 (459)
T KOG4340|consen 36 ELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE------LEQYRLYQAQSLYKACIYADALRVAFLLL---- 105 (459)
T ss_pred HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH------HHHHHHHHHHHHHHhcccHHHHHHHHHhc----
Confidence 3566777766666555544 36788888899887665332 55666667777777888888887776655
Q ss_pred CChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHH
Q 007648 455 KTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLEST 534 (594)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 534 (594)
+++...+...-.-+.+..+.+++..++.+.++.-..+ +....+..+-+..+.|++++|
T Consensus 106 D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en----------------------~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 106 DNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN----------------------EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred CCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC----------------------ccchhccchheeeccccHHHH
Confidence 3342222222222334456777877777766543221 234445556666688999999
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhh
Q 007648 535 RAVYERILDLRIATPQIIINYALLLEVWTLLHVFL 569 (594)
Q Consensus 535 ~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~ 569 (594)
.+-|+.|++...-+|.+-++.+....+.|++..|+
T Consensus 164 vqkFqaAlqvsGyqpllAYniALaHy~~~qyasAL 198 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALAHYSSRQYASAL 198 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999997
No 219
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=97.21 E-value=0.00057 Score=41.17 Aligned_cols=29 Identities=31% Similarity=0.462 Sum_probs=26.7
Q ss_pred ChhHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 007648 41 PFKKRFVIYERALKALPGSYKLWHAYLIER 70 (594)
Q Consensus 41 ~~~~a~~~~e~al~~~P~s~~lW~~~~~~~ 70 (594)
.+++|+.+|+|++..+| ++..|+.|+.++
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyAkFE 30 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYAKFE 30 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHHHhh
Confidence 47899999999999998 799999999987
No 220
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.15 E-value=0.00096 Score=41.76 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC
Q 007648 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKT 456 (594)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~ 456 (594)
.+|..+|.++...|++++|+..|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 567777888888888888888888888877764
No 221
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=97.13 E-value=0.00088 Score=41.46 Aligned_cols=32 Identities=28% Similarity=0.475 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 007648 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLT 113 (594)
Q Consensus 82 ~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~ 113 (594)
|+.+.|+.+|++++...|.++.+|..|+.++.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 34678889999999999999999999988764
No 222
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.10 E-value=0.001 Score=41.62 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhccCCc
Q 007648 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIAT 548 (594)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~ 548 (594)
.+|..+|.++...|++++|++.|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 678999999999999999999999999999986
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.05 E-value=0.0013 Score=50.62 Aligned_cols=58 Identities=14% Similarity=0.083 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhc----cCCc---hHHHHHHHHHHHHhchhhhhhhccc
Q 007648 516 RLWTFYVDLEESLGNLESTRAVYERILDL----RIAT---PQIIINYALLLEVWTLLHVFLLHVP 573 (594)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~P~~---~~~~~~~~~~~~~~g~~~~a~~~~~ 573 (594)
.++..++.++...|++++|+..|++++++ .+++ +.++.++|.++...|++++|++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56788999999999999999999999975 2233 4577899999999999999997654
No 224
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.03 E-value=0.001 Score=41.68 Aligned_cols=33 Identities=12% Similarity=0.257 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC
Q 007648 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKT 456 (594)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~ 456 (594)
.+|+.+|.++...|++++|...|++|++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 567788888888888888888888888887763
No 225
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.00 E-value=0.29 Score=45.30 Aligned_cols=187 Identities=18% Similarity=0.128 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHHHHH--hcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HHHHcCCchHHH
Q 007648 82 PEYETLNNTFERALV--TMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLR-FVEQEGIPIETS 158 (594)
Q Consensus 82 ~~~~~A~~~~~~al~--~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~-~~~~~~~~~~~a 158 (594)
+++..+...+..++. ..|.....+...+......+++..+...+..++...+.. ...+..... .....+.. +.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~a 149 (291)
T COG0457 73 GRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP--DLAEALLALGALYELGDY-EEA 149 (291)
T ss_pred ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc--chHHHHHHHHHHHHcCCH-HHH
Confidence 445555555555555 455555556555655555555666666666665544442 111111122 33344555 566
Q ss_pred HHHHHHHHhhCCC--CH-HHH---HHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCc
Q 007648 159 LRVYRRYLKYDPS--HI-EDF---IEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLN 232 (594)
Q Consensus 159 ~~~~~~~l~~~p~--~~-~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 232 (594)
...|.+++...|. .. ..+ ...+...++++.+...+.+++..... .....+..........+. ...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~---~~~ 220 (291)
T COG0457 150 LELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD------DDAEALLNLGLLYLKLGK---YEE 220 (291)
T ss_pred HHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc------cchHHHHHhhHHHHHccc---HHH
Confidence 6666665554442 11 111 12233445555666555555521000 000011111111110000 000
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Q 007648 233 VDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVT 281 (594)
Q Consensus 233 ~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 281 (594)
....+..++...|.. ...+...+..+...+..+.+...+.+++...|.
T Consensus 221 a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 221 ALEYYEKALELDPDN-AEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHhhCccc-HHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 112222233333321 234444555555566788888888888877665
No 226
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.95 E-value=0.0014 Score=40.99 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhccCCc
Q 007648 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIAT 548 (594)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~ 548 (594)
.+|...|.++..+|++++|...|++|++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 678999999999999999999999999999975
No 227
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=96.95 E-value=0.006 Score=50.99 Aligned_cols=100 Identities=19% Similarity=0.322 Sum_probs=45.6
Q ss_pred chHhHHHHhh-CC--CCHHHHHHHHHHHH----cC-ChhHHHHHHHHHHHhC---------CCChHHHHHHHHHHHHhcc
Q 007648 13 DLLYEEELLR-NP--FSLKLWWRYLVAKR----EA-PFKKRFVIYERALKAL---------PGSYKLWHAYLIERLSIVK 75 (594)
Q Consensus 13 ~~~~e~~l~~-~P--~~~~~w~~~~~~~~----~~-~~~~a~~~~e~al~~~---------P~s~~lW~~~~~~~~~~~~ 75 (594)
+..||..|.. .. .=.+.|.+||++.. .| .-.....+++|+++.+ |.-+.+|..|++..
T Consensus 5 r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~----- 79 (125)
T smart00777 5 RQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC----- 79 (125)
T ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc-----
Confidence 4455666521 11 11366666666543 12 2234455555555543 22334555555432
Q ss_pred CCCCCchhHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHhcccHHHHHHHHH
Q 007648 76 NLPITHPEYETLNNTFERALVTM--HKMPRIWIMYLETLTSQKFITKARRTFD 126 (594)
Q Consensus 76 ~~~~~~~~~~~A~~~~~~al~~~--P~~~~lw~~y~~~~~~~~~~~~A~~~~~ 126 (594)
+..+.+|..+.+.. -..+..|..+|.++...|++.+|.++|+
T Consensus 80 ---------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 ---------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred ---------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 11233444444332 2344455555555555555555555554
No 228
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.92 E-value=0.011 Score=48.84 Aligned_cols=91 Identities=12% Similarity=0.012 Sum_probs=78.7
Q ss_pred cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcC
Q 007648 396 EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK 475 (594)
Q Consensus 396 ~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~ 475 (594)
.|+.+.|++.|.+|+..+|. .+.+|.+-++.+.-+|+.++|.+-+++|++......-+-...++.-|.++...|
T Consensus 56 ~g~Ld~AlE~F~qal~l~P~------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLAPE------RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred ccchHHHHHHHHHHHHhccc------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 37899999999999997655 578899999999999999999999999999765555555567888888888899
Q ss_pred ChHHHHHHHHHHhcCCc
Q 007648 476 NFKGALELMRRATAEPS 492 (594)
Q Consensus 476 ~~~~A~~~~~~al~~~p 492 (594)
+-+.||.=|++|-++..
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 99999999999988865
No 229
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.92 E-value=0.013 Score=52.24 Aligned_cols=103 Identities=17% Similarity=0.170 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCC
Q 007648 425 LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGN 504 (594)
Q Consensus 425 ~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 504 (594)
.-+.++..+...|+++.|...++.++...-+ .....-+-.+++.+...+|.+++|.+++.......=
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D-e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w------------ 157 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKD-ENLKALAALRLARVQLQQKKADAALKTLDTIKEESW------------ 157 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchh-HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH------------
Confidence 3456677778899999999999999964332 222334678889999999999999999875543311
Q ss_pred hhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCch
Q 007648 505 EPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP 549 (594)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~ 549 (594)
.+.+-..-||++...|+-++||+.|++|++.+++.+
T Consensus 158 ---------~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 158 ---------AAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred ---------HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 124456679999999999999999999999886655
No 230
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.88 E-value=0.99 Score=49.53 Aligned_cols=185 Identities=13% Similarity=0.106 Sum_probs=117.3
Q ss_pred CCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHH
Q 007648 79 ITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETS 158 (594)
Q Consensus 79 ~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a 158 (594)
+..+++.+|.+...+.++.+|+.+..-..-+-...++|+.++|..+++ ++...+.+ +......+-.++..++.. ++|
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~~~~~-D~~tLq~l~~~y~d~~~~-d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLE-ALYGLKGT-DDLTLQFLQNVYRDLGKL-DEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHh-hhccCCCC-chHHHHHHHHHHHHHhhh-hHH
Confidence 345788999999999999999998888888888899999999997776 55544443 245555566677788988 999
Q ss_pred HHHHHHHHhhCCCCHH---HHHHHHHhcccHH----HHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcc--cccc
Q 007648 159 LRVYRRYLKYDPSHIE---DFIEFLVKSKLWQ----EAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHA--TEIS 229 (594)
Q Consensus 159 ~~~~~~~l~~~p~~~~---~~~~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~--~~~~ 229 (594)
..+|++++..+|+ .+ .+...+.+.+.|. .|.++|+.. |+..+-.|.-..-++...+ +...
T Consensus 97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~----------pk~~yyfWsV~Slilqs~~~~~~~~ 165 (932)
T KOG2053|consen 97 VHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNF----------PKRAYYFWSVISLILQSIFSENELL 165 (932)
T ss_pred HHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CcccchHHHHHHHHHHhccCCcccc
Confidence 9999999999999 43 3445555555554 355666533 3334566876544444322 2211
Q ss_pred cC----cHHHHHHHHHhhc-cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 007648 230 GL----NVDAIIRGGIRKF-TDEVGRLWTSLADYYIRRELFEKARDIFEEGMM 277 (594)
Q Consensus 230 ~~----~~~~~~~~~~~~~-p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (594)
.. -++...++.++.- +-....=.+-+..++..+|++++|..++..-+.
T Consensus 166 ~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la 218 (932)
T KOG2053|consen 166 DPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLA 218 (932)
T ss_pred cchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 10 0112222222222 111111133445566677888888888855443
No 231
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.83 E-value=0.057 Score=53.51 Aligned_cols=133 Identities=10% Similarity=0.014 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--CCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhh
Q 007648 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVN--YKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (594)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 500 (594)
..++-++|+.|...|+++.|+-.-+.-|.+. .-+-.+....+-.++....=.|+++.|.+.|++++.+.-+
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAie------- 267 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIE------- 267 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHH-------
Confidence 4566677888888999999998888777653 3333345566777787777789999999999998766432
Q ss_pred ccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccC------CchHHHHHHHHHHHHhchhhhhh
Q 007648 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRI------ATPQIIINYALLLEVWTLLHVFL 569 (594)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P------~~~~~~~~~~~~~~~~g~~~~a~ 569 (594)
.+++. -...-.+.+++.+.-+..+++|+..+.|.+.+-- ....+...++..+...|..++|+
T Consensus 268 -lg~r~------vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl 335 (639)
T KOG1130|consen 268 -LGNRT------VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKAL 335 (639)
T ss_pred -hcchh------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHH
Confidence 01111 0235567778888888889999999999888532 33456677888888889888887
No 232
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.82 E-value=0.026 Score=57.49 Aligned_cols=109 Identities=11% Similarity=0.000 Sum_probs=82.8
Q ss_pred hhccCCCChHHHHHHHHHhcCCchhHHHHHHHHHhcc----CCC---cc------------cCCchHHHHHHHHHHHhcC
Q 007648 377 LLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTV----DPM---KA------------VGKPHTLWVAFAKLYETYK 437 (594)
Q Consensus 377 ~l~~~p~~~~~~~~~~~~~~~~~~~a~~~y~~Ai~~~----~~~---~~------------~~~~~~~~~~~a~~~~~~~ 437 (594)
+|..+|+++++|..++.-......++..+|++|++.- ... .. ......+-..+|.+.++.|
T Consensus 194 ALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklG 273 (539)
T PF04184_consen 194 ALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLG 273 (539)
T ss_pred HHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhC
Confidence 6899999999998877655566888999999998641 000 00 0112445567899999999
Q ss_pred CHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007648 438 DIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRA 487 (594)
Q Consensus 438 ~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 487 (594)
..++|++.|+..++..|... +..+...+...++..+.+.++..++.+=
T Consensus 274 r~~EAIk~~rdLlke~p~~~--~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 274 RLREAIKMFRDLLKEFPNLD--NLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred ChHHHHHHHHHHHhhCCccc--hhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 99999999999999777421 1267888888889999999999998884
No 233
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.099 Score=48.01 Aligned_cols=106 Identities=11% Similarity=0.101 Sum_probs=77.6
Q ss_pred HHHHHHHhc---CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChh---hHH
Q 007648 388 WHRRVKIFE---GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVD---HLA 461 (594)
Q Consensus 388 ~~~~~~~~~---~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~---~~~ 461 (594)
...++.+++ .++++|+..|++|-.-...+..+.......+..+++--..+++.+|+.+|++.....-+++- ...
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K 195 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK 195 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence 345566665 46888999999998754443333334577888899888999999999999998876555541 122
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcCCch
Q 007648 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSV 493 (594)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 493 (594)
...+.-+.+.+...+.-.+...+++-...+|.
T Consensus 196 dyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 196 DYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 34455566667778888899999999999996
No 234
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.046 Score=52.74 Aligned_cols=191 Identities=14% Similarity=0.021 Sum_probs=126.1
Q ss_pred hhccCCCChHHHHHH--HHHhcCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 007648 377 LLRQNPHNVEQWHRR--VKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNY 454 (594)
Q Consensus 377 ~l~~~p~~~~~~~~~--~~~~~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p 454 (594)
.|...|.+.-+|..- +.++.|+.+..+..+++.+-.-.++. +.++.+.-+|+...++.|-++.|.+.-++|++++|
T Consensus 129 lL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dl--p~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~ 206 (491)
T KOG2610|consen 129 LLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADL--PCYSYVHGMYAFGLEECGIYDDAEKQADRALQINR 206 (491)
T ss_pred HHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCC--cHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCC
Confidence 467778887776543 44556887777888888664322221 23567777888888899999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCc-hhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHH
Q 007648 455 KTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS-VEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLES 533 (594)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 533 (594)
.+. -.-...+.++.-.|.++++.+...+--..=. +.+ + -..=|-+.+-++...+.++.
T Consensus 207 ~D~----Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~m---l--------------asHNyWH~Al~~iE~aeye~ 265 (491)
T KOG2610|consen 207 FDC----WASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWM---L--------------ASHNYWHTALFHIEGAEYEK 265 (491)
T ss_pred cch----HHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhH---H--------------HhhhhHHHHHhhhcccchhH
Confidence 887 6667777777778888888876654321100 000 0 01224566777777899999
Q ss_pred HHHHHHHHHh--ccCCchHHHHHH---------HHHHHHhchhhhhh-hcccCcccchhhhhhhheeec
Q 007648 534 TRAVYERILD--LRIATPQIIINY---------ALLLEVWTLLHVFL-LHVPFTFSGLCMFTFFFTVSC 590 (594)
Q Consensus 534 A~~~~~~al~--~~P~~~~~~~~~---------~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~~ 590 (594)
|..+|++-+- +.-+++.+...+ ..+..+..++.+.+ -+.-+.+.|+-.+++...++-
T Consensus 266 aleIyD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l~d~a~~~~d~~~~itt~~~~~~ 334 (491)
T KOG2610|consen 266 ALEIYDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSLTDKAMWYQDWLFDITTIWALSK 334 (491)
T ss_pred HHHHHHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhhcchhhhhhhhhhhhhHHhhhhh
Confidence 9999999776 334455333222 22233444555555 455677888888888776653
No 235
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.78 E-value=0.012 Score=63.57 Aligned_cols=144 Identities=9% Similarity=-0.077 Sum_probs=82.2
Q ss_pred cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcC
Q 007648 396 EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK 475 (594)
Q Consensus 396 ~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~ 475 (594)
.+++.+|.+-.++.++.. |+ ...+-.--|....+.|..++|..+++..-...+++- ...-.+..++...|
T Consensus 22 ~~qfkkal~~~~kllkk~-Pn-----~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~----~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKH-PN-----ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDD----LTLQFLQNVYRDLG 91 (932)
T ss_pred hHHHHHHHHHHHHHHHHC-CC-----cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCch----HHHHHHHHHHHHHh
Confidence 356777777777766653 32 344555556667778888888866655444555554 33344455666777
Q ss_pred ChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchH-HHHH
Q 007648 476 NFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ-IIIN 554 (594)
Q Consensus 476 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~-~~~~ 554 (594)
++++|..+|+++++..|+ .....+|-..+.|.+++.+-+++==+.-+..|.+|- .|.-
T Consensus 92 ~~d~~~~~Ye~~~~~~P~---------------------eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV 150 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKYPS---------------------EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV 150 (932)
T ss_pred hhhHHHHHHHHHHhhCCc---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH
Confidence 888888888888888884 233333333344444444333333333335677773 5555
Q ss_pred HHHHHHHhchhhhhhh
Q 007648 555 YALLLEVWTLLHVFLL 570 (594)
Q Consensus 555 ~~~~~~~~g~~~~a~~ 570 (594)
-+..+......++++.
T Consensus 151 ~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 151 ISLILQSIFSENELLD 166 (932)
T ss_pred HHHHHHhccCCccccc
Confidence 5555555555555444
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.025 Score=53.95 Aligned_cols=112 Identities=13% Similarity=0.045 Sum_probs=70.2
Q ss_pred hcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhcc
Q 007648 435 TYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKS 514 (594)
Q Consensus 435 ~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 514 (594)
..|++..|...|..++...|++. ++-..++.++...|+.+.|..++...=.....+ .
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~----~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-------------------~ 202 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENS----EAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-------------------A 202 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccc----hHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-------------------H
Confidence 57788888888888888888887 777788888888888888777766431111110 0
Q ss_pred HhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhhh
Q 007648 515 LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFLL 570 (594)
Q Consensus 515 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~~ 570 (594)
.......+.+..+.....+.. -+++.+..+|+++++...++..+...|+.++|++
T Consensus 203 ~~~l~a~i~ll~qaa~~~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale 257 (304)
T COG3118 203 AHGLQAQIELLEQAAATPEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALE 257 (304)
T ss_pred HHHHHHHHHHHHHHhcCCCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 111223444555544444422 2344455677777777777777777777777764
No 237
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=96.53 E-value=0.0043 Score=37.47 Aligned_cols=29 Identities=17% Similarity=0.439 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 007648 84 YETLNNTFERALVTMHKMPRIWIMYLETLT 113 (594)
Q Consensus 84 ~~~A~~~~~~al~~~P~~~~lw~~y~~~~~ 113 (594)
++.|+.+|+|.+..+|+ +..|+.||.|+.
T Consensus 3 ~dRAR~IyeR~v~~hp~-~k~WikyAkFEe 31 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE-VKNWIKYAKFEE 31 (32)
T ss_pred HHHHHHHHHHHHHhCCC-chHHHHHHHhhc
Confidence 46677777777777665 577777776653
No 238
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.029 Score=51.53 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=48.5
Q ss_pred ChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHH
Q 007648 41 PFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITK 120 (594)
Q Consensus 41 ~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~ 120 (594)
.+..|+..|.+||..+|..+..|..-+.-. ...++++.+..-..+|+.++|+++...+.++.+......++.
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralch--------lk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCH--------LKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHH--------HHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 345556666666666666666665544332 223455666666666666666666666666666666666666
Q ss_pred HHHHHHHHHH
Q 007648 121 ARRTFDRALC 130 (594)
Q Consensus 121 A~~~~~ral~ 130 (594)
|...+.||..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 6666666633
No 239
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.49 E-value=0.0053 Score=38.33 Aligned_cols=32 Identities=28% Similarity=0.464 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 007648 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYK 455 (594)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~ 455 (594)
.+|+.+|.++...|+++.|...|+++++.+|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57888888888888888888888888888874
No 240
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=0.8 Score=43.18 Aligned_cols=86 Identities=9% Similarity=0.033 Sum_probs=64.4
Q ss_pred CchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCCh
Q 007648 398 NPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNF 477 (594)
Q Consensus 398 ~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~ 477 (594)
.+.+|.-+|+.--...+| .+.+....+.+...+|++++|..+++.||..++++| +....++..-...|..
T Consensus 188 k~qdAfyifeE~s~k~~~------T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp----etL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPP------TPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDP----ETLANLIVLALHLGKD 257 (299)
T ss_pred hhhhHHHHHHHHhcccCC------ChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCH----HHHHHHHHHHHHhCCC
Confidence 477788888887765666 567778888899999999999999999999999999 5555666554445544
Q ss_pred -HHHHHHHHHHhcCCch
Q 007648 478 -KGALELMRRATAEPSV 493 (594)
Q Consensus 478 -~~A~~~~~~al~~~p~ 493 (594)
+.....+.+....+|+
T Consensus 258 ~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 258 AEVTERNLSQLKLSHPE 274 (299)
T ss_pred hHHHHHHHHHHHhcCCc
Confidence 4444555666666774
No 241
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.45 E-value=0.045 Score=47.81 Aligned_cols=98 Identities=21% Similarity=0.293 Sum_probs=52.4
Q ss_pred cCChhHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 007648 39 EAPFKKRFVIYERALKALPGS------YKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETL 112 (594)
Q Consensus 39 ~~~~~~a~~~~e~al~~~P~s------~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~ 112 (594)
.++.+.+...+++++..+... ..-|..- .+..++... ..+...++..+
T Consensus 19 ~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~--------------------~r~~l~~~~------~~~~~~l~~~~ 72 (146)
T PF03704_consen 19 AGDPEEAIELLEEALALYRGDFLPDLDDEEWVEP--------------------ERERLRELY------LDALERLAEAL 72 (146)
T ss_dssp TT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHH--------------------HHHHHHHHH------HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHH--------------------HHHHHHHHH------HHHHHHHHHHH
Confidence 578899999999999987321 1134322 122222222 13334555555
Q ss_pred HhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 007648 113 TSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRY 165 (594)
Q Consensus 113 ~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~ 165 (594)
...|+++.|...+++++..+|.+ ..+|..+...+...|+. ..|.++|+++
T Consensus 73 ~~~~~~~~a~~~~~~~l~~dP~~--E~~~~~lm~~~~~~g~~-~~A~~~Y~~~ 122 (146)
T PF03704_consen 73 LEAGDYEEALRLLQRALALDPYD--EEAYRLLMRALAAQGRR-AEALRVYERY 122 (146)
T ss_dssp HHTT-HHHHHHHHHHHHHHSTT---HHHHHHHHHHHHHTT-H-HHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHCcCH-HHHHHHHHHH
Confidence 55666666666666666666654 55666666666566665 5666655544
No 242
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.016 Score=53.23 Aligned_cols=89 Identities=12% Similarity=0.077 Sum_probs=74.9
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchH
Q 007648 77 LPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIE 156 (594)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~ 156 (594)
.|.-...|..|+..|.+|+..+|..+..|.+-+.++++.++++.+..-..||+++.|+. ......++.+......+ +
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~--vk~h~flg~~~l~s~~~-~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL--VKAHYFLGQWLLQSKGY-D 95 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH--HHHHHHHHHHHHhhccc-c
Confidence 45566789999999999999999999999999999999999999999999999999975 44444556666556667 8
Q ss_pred HHHHHHHHHHhh
Q 007648 157 TSLRVYRRYLKY 168 (594)
Q Consensus 157 ~a~~~~~~~l~~ 168 (594)
.|++.+.++..+
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 999999888543
No 243
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=96.43 E-value=0.048 Score=45.65 Aligned_cols=110 Identities=17% Similarity=0.247 Sum_probs=75.2
Q ss_pred HHHHHHHHHH-HhC--CCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHh---------cCCChHHHHHHHHH
Q 007648 44 KRFVIYERAL-KAL--PGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVT---------MHKMPRIWIMYLET 111 (594)
Q Consensus 44 ~a~~~~e~al-~~~--P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---------~P~~~~lw~~y~~~ 111 (594)
..+..|+..| ... .+=.++|..|+.+..+... +.+.-..-..+++|+++. ||.-.++|+.|+.+
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p----~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~ 78 (125)
T smart00777 3 QQRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYP----QGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADN 78 (125)
T ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCC----CCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh
Confidence 4567788887 322 1226999999999765422 112335667778888775 35566899999976
Q ss_pred HHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 007648 112 LTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRR 164 (594)
Q Consensus 112 ~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~ 164 (594)
. +..+.+|.-..+..=+..+..+|..++.+++..|+. .+|.++|+.
T Consensus 79 ~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~-~~A~~iy~~ 124 (125)
T smart00777 79 C------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRY-KKADEVYQL 124 (125)
T ss_pred c------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCH-HHHHHHHHc
Confidence 4 335667776666543444567788888888888988 899988864
No 244
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.19 Score=46.96 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=53.8
Q ss_pred ChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 007648 59 SYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTM-HKMPRIWIMYLETLTSQKFITKARRTFDRALC 130 (594)
Q Consensus 59 s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~ 130 (594)
|+++|.+-..+.+..+.+.-...+.|.-...++.+.++.+ |..|.+-..++.+-++.|+.+.|...|++.-+
T Consensus 168 sv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek 240 (366)
T KOG2796|consen 168 SIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK 240 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6799988776654433222244577777888888888887 68888888888888888998888888886543
No 245
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.39 E-value=0.0058 Score=38.16 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhccCCc
Q 007648 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIAT 548 (594)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~ 548 (594)
.+|...+.++..+|++++|.+.|+++++.+|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 568899999999999999999999999999954
No 246
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.037 Score=51.58 Aligned_cols=58 Identities=7% Similarity=0.094 Sum_probs=39.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcc-CCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 007648 427 VAFAKLYETYKDIANARVIFDKAVQVN-YKTVDHLASIWCEWAEMELRHKNFKGALELMRRAT 488 (594)
Q Consensus 427 ~~~a~~~~~~~~~~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 488 (594)
+.++.++.-.|.+.-..+.+.+.++.+ |.+| .+--.++.+.++.|+.+.|...|+++-
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p----~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEP----QLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccH----HHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 444555556677777777777777755 5566 666667777777777777777777554
No 247
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=0.57 Score=43.52 Aligned_cols=117 Identities=8% Similarity=0.076 Sum_probs=63.4
Q ss_pred cCCHHHHHHHHHHHHhccC-CChhhH-HHHHHHHHHHHHhcCChHHHHHHHHHHhcCCch-hHhhhhhccCChhhhHHhh
Q 007648 436 YKDIANARVIFDKAVQVNY-KTVDHL-ASIWCEWAEMELRHKNFKGALELMRRATAEPSV-EVRRRVAADGNEPVQMKLH 512 (594)
Q Consensus 436 ~~~~~~A~~~~~kal~~~p-~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~ 512 (594)
.-+++.|+++|++++.+.- ++...+ .+++-..+..+.+...+++|-..+.+-....-. +.+ +
T Consensus 123 nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y------~--------- 187 (308)
T KOG1585|consen 123 NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY------N--------- 187 (308)
T ss_pred cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc------c---------
Confidence 4556777777777776422 221111 134445555666666676666655544332110 000 0
Q ss_pred ccHhhHHHHHHHHHHhCChHHHHHHHHHHHhc----cCCchHHHHHHHHHHHHhchhhhh
Q 007648 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDL----RIATPQIIINYALLLEVWTLLHVF 568 (594)
Q Consensus 513 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~P~~~~~~~~~~~~~~~~g~~~~a 568 (594)
+--..++..+-++.-..++..|.++|+..-++ .|++..+..++..+| ..||.+++
T Consensus 188 ~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 188 SQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 01133444445555556788888888887663 456667777777776 35555554
No 248
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.30 E-value=0.012 Score=56.77 Aligned_cols=95 Identities=16% Similarity=0.159 Sum_probs=79.3
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchH
Q 007648 77 LPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIE 156 (594)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~ 156 (594)
.+..+|.|++|+..|.+++..+|.++-.+..-+..+.+++.+..|..-++.|+.++-. ....|..-+..-..+|.. .
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~--Y~KAYSRR~~AR~~Lg~~-~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL--YVKAYSRRMQARESLGNN-M 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH--HHHHHHHHHHHHHHHhhH-H
Confidence 4567899999999999999999999999999999999999999999999999987542 133444334444556777 9
Q ss_pred HHHHHHHHHHhhCCCCHH
Q 007648 157 TSLRVYRRYLKYDPSHIE 174 (594)
Q Consensus 157 ~a~~~~~~~l~~~p~~~~ 174 (594)
+|.+-++++|.+.|.+.+
T Consensus 183 EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHhHHHHHhhCcccHH
Confidence 999999999999999774
No 249
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.23 E-value=0.24 Score=49.82 Aligned_cols=145 Identities=12% Similarity=0.113 Sum_probs=95.9
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-ccCCChhhHHHHHHHHHHHHH
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYET---YKDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMEL 472 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~kal~-~~p~~~~~~~~~~~~~~~~~~ 472 (594)
.+++..+.+.+.. ...|. +.....+.+-..||..+-+ .|+.++|+.++..++. ..+.++ +.+..+|.++.
T Consensus 155 qdydamI~Lve~l-~~~p~-~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~----d~~gL~GRIyK 228 (374)
T PF13281_consen 155 QDYDAMIKLVETL-EALPT-CDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP----DTLGLLGRIYK 228 (374)
T ss_pred hhHHHHHHHHHHh-hccCc-cchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh----HHHHHHHHHHH
Confidence 5788888888774 33332 2233356677788887877 8999999999999665 567778 66667776652
Q ss_pred h---------cCChHHHHHHHHHHhcCCchh---H-h-hhhh-----ccCChhhhH-------------HhhccHhhH--
Q 007648 473 R---------HKNFKGALELMRRATAEPSVE---V-R-RRVA-----ADGNEPVQM-------------KLHKSLRLW-- 518 (594)
Q Consensus 473 ~---------~~~~~~A~~~~~~al~~~p~~---~-~-~~~~-----~~~~~~~~~-------------~~~~~~~~~-- 518 (594)
. ...+++|+..|.+|.+..|+. + . ..+. +........ ..-....+|
T Consensus 229 D~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ 308 (374)
T PF13281_consen 229 DLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDV 308 (374)
T ss_pred HHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHH
Confidence 2 124789999999999999861 1 1 1111 222111110 001245566
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhccCC
Q 007648 519 TFYVDLEESLGNLESTRAVYERILDLRIA 547 (594)
Q Consensus 519 ~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 547 (594)
..++++..-.|+.++|.+.++++++.+|.
T Consensus 309 ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 309 ATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 45667777789999999999999998644
No 250
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.23 E-value=0.0089 Score=61.48 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=87.3
Q ss_pred HHHH--HHHHHHH-hcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhh
Q 007648 424 TLWV--AFAKLYE-TYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (594)
Q Consensus 424 ~~~~--~~a~~~~-~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 500 (594)
..|+ +.|-+|+ ..|+...|++.+.+|+...|...+ --...+++++++.|-.-.|-..+.+++.+..+
T Consensus 605 p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~---v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s------- 674 (886)
T KOG4507|consen 605 PIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQD---VPLVNLANLLIHYGLHLDATKLLLQALAINSS------- 674 (886)
T ss_pred CeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhc---ccHHHHHHHHHHhhhhccHHHHHHHHHhhccc-------
Confidence 3444 4455666 489999999999999998887651 12467777777777777889999999888753
Q ss_pred ccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHH
Q 007648 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINY 555 (594)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~ 555 (594)
.|.++...|+++..+.+.+.|++.+..|+++.|++|..-..+
T Consensus 675 -------------epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l 716 (886)
T KOG4507|consen 675 -------------EPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSL 716 (886)
T ss_pred -------------CchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHH
Confidence 568889999999999999999999999999999999876544
No 251
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=0.15 Score=47.15 Aligned_cols=166 Identities=11% Similarity=-0.009 Sum_probs=104.2
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----cCCChhhHHHHHHHHHHHH
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQV-----NYKTVDHLASIWCEWAEME 471 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~-----~p~~~~~~~~~~~~~~~~~ 471 (594)
+++++|..++.+|++....+...-.-...+-.-+.+..+...+.++.+.++||... .|+.. ..-+..+--.
T Consensus 45 k~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA----AmaleKAak~ 120 (308)
T KOG1585|consen 45 KKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA----AMALEKAAKA 120 (308)
T ss_pred ccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH----HHHHHHHHHH
Confidence 57888888888888642221111112344455555666777889999999999874 23333 3333333333
Q ss_pred HhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHh----c--c
Q 007648 472 LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD----L--R 545 (594)
Q Consensus 472 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~----~--~ 545 (594)
+...+++.|.++|++++...-++- +..+-..++-..+.++.++.++++|-..+.|-.- . -
T Consensus 121 lenv~Pd~AlqlYqralavve~~d--------------r~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y 186 (308)
T KOG1585|consen 121 LENVKPDDALQLYQRALAVVEEDD--------------RDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY 186 (308)
T ss_pred hhcCCHHHHHHHHHHHHHHHhccc--------------hHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc
Confidence 567889999999999987754310 0012345566667778888888887666655332 2 2
Q ss_pred CCchHHHHHHHHHHHHhchhhhhhhcccCcccchh
Q 007648 546 IATPQIIINYALLLEVWTLLHVFLLHVPFTFSGLC 580 (594)
Q Consensus 546 P~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 580 (594)
|.....++..+.++.-..||..|..+++-...|=+
T Consensus 187 ~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~ 221 (308)
T KOG1585|consen 187 NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPA 221 (308)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcc
Confidence 34445566666667677799999888877554433
No 252
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=0.33 Score=44.70 Aligned_cols=141 Identities=11% Similarity=0.130 Sum_probs=89.3
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHH-hcCCHHHHHHHHHHHHhc--cCCChhhHHHHHHHHHHHHHh
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYE-TYKDIANARVIFDKAVQV--NYKTVDHLASIWCEWAEMELR 473 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~~~~~ 473 (594)
.++.+|..++++||...-...-...-..-++.+|.+++ ...+++.|+..|++|-.- ..+....-+...+.-+++--.
T Consensus 87 ~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~ 166 (288)
T KOG1586|consen 87 VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ 166 (288)
T ss_pred cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH
Confidence 57788888999988853221100112455678899988 469999999999999763 122222223456666666667
Q ss_pred cCChHHHHHHHHHHhcCCchh-HhhhhhccCChhhhHHhhccH-hhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHH
Q 007648 474 HKNFKGALELMRRATAEPSVE-VRRRVAADGNEPVQMKLHKSL-RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI 551 (594)
Q Consensus 474 ~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 551 (594)
.+++.+|+.+|++.....-++ +..+ +. ..+..-+....-.++.=.+...+++..+.+|.-.++
T Consensus 167 leqY~~Ai~iyeqva~~s~~n~LLKy---------------s~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVARSSLDNNLLKY---------------SAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHh---------------HHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 899999999999987654331 1000 11 222222333333366667888889988999987665
Q ss_pred H
Q 007648 552 I 552 (594)
Q Consensus 552 ~ 552 (594)
.
T Consensus 232 R 232 (288)
T KOG1586|consen 232 R 232 (288)
T ss_pred H
Confidence 5
No 253
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.05 E-value=0.063 Score=46.85 Aligned_cols=65 Identities=11% Similarity=0.004 Sum_probs=54.7
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE 490 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 490 (594)
+..+...++..+...|+++.|...+++++..+|.+- .+|..+...+...|+...|...|++....
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E----~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYDE----EAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H----HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 446677778888889999999999999999999998 89999999999999999999999987543
No 254
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.96 E-value=0.5 Score=46.35 Aligned_cols=136 Identities=19% Similarity=0.148 Sum_probs=91.2
Q ss_pred cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC----CChh--hHHHHHHHHHH
Q 007648 396 EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNY----KTVD--HLASIWCEWAE 469 (594)
Q Consensus 396 ~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p----~~~~--~~~~~~~~~~~ 469 (594)
.+.++++++.|+.|++.-........-..+...++.++-+..|+++|.-...+|..+.. ++.. .-.-..+..+.
T Consensus 135 ls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaV 214 (518)
T KOG1941|consen 135 LSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAV 214 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHH
Confidence 35788999999999974222111112346788999999999999999999999887532 2221 11123444555
Q ss_pred HHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q 007648 470 MELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR 545 (594)
Q Consensus 470 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 545 (594)
.+...|.+..|.+.-++|.++.- ..|+++.+ ..-...++|++...|+.|.|..-|+.|+...
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal--------~~Gdra~~------arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLAL--------QHGDRALQ------ARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHH--------HhCChHHH------HHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 55667888888888888876633 12222222 1334677899999999999999899888754
No 255
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.91 E-value=0.29 Score=49.71 Aligned_cols=144 Identities=15% Similarity=0.140 Sum_probs=102.7
Q ss_pred CCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc------
Q 007648 382 PHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVN------ 453 (594)
Q Consensus 382 p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~------ 453 (594)
......|...+.+.. |+++.|...+.++....++.. ...+.+.+..+.+.+..|+...|+..++..+...
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~--~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~ 220 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSE--SLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNID 220 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCccc--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccc
Confidence 345678888888775 889999999999876432211 1146788889999999999999999999988821
Q ss_pred ------------------------CCChhhHHHHHHHHHHHHHhc------CChHHHHHHHHHHhcCCchhHhhhhhccC
Q 007648 454 ------------------------YKTVDHLASIWCEWAEMELRH------KNFKGALELMRRATAEPSVEVRRRVAADG 503 (594)
Q Consensus 454 ------------------------p~~~~~~~~~~~~~~~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 503 (594)
.........+++.+|...... ++.+++.+.|+.+++.+|+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---------- 290 (352)
T PF02259_consen 221 SISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS---------- 290 (352)
T ss_pred cccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh----------
Confidence 111234556788888877666 8899999999999999995
Q ss_pred ChhhhHHhhccHhhHHHHHHHHHHhCC-----------------hHHHHHHHHHHHhccCC
Q 007648 504 NEPVQMKLHKSLRLWTFYVDLEESLGN-----------------LESTRAVYERILDLRIA 547 (594)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~g~-----------------~~~A~~~~~~al~~~P~ 547 (594)
....|..|+.+..+.-. ...|+..|-+|+...|.
T Consensus 291 ----------~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 291 ----------WEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred ----------HHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 33556666665544311 13467777777777666
No 256
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.85 E-value=0.099 Score=41.19 Aligned_cols=77 Identities=16% Similarity=0.041 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 007648 88 NNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRY 165 (594)
Q Consensus 88 ~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~ 165 (594)
...+++++..+|+++...+.++..+...|+++.|...+-..++.+|.......-..++.+...+|.. +....-|++-
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~-~plv~~~RRk 84 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG-DPLVSEYRRK 84 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT--HHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC-ChHHHHHHHH
Confidence 5678999999999999999999999999999999999999999988754455666677777777765 5555555553
No 257
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.70 E-value=0.25 Score=50.70 Aligned_cols=137 Identities=15% Similarity=0.102 Sum_probs=81.6
Q ss_pred HcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccc
Q 007648 38 REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKF 117 (594)
Q Consensus 38 ~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~ 117 (594)
++.++...++.-.+||+.+|++.+.|.-.++-+ ...+.++.++|++|++....+ +.........|.
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEEe----------A~Ti~Eae~l~rqAvkAgE~~----lg~s~~~~~~g~ 245 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEEE----------ASTIVEAEELLRQAVKAGEAS----LGKSQFLQHHGH 245 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc----------ccCHHHHHHHHHHHHHHHHHh----hchhhhhhcccc
Confidence 356777777788888888888888887666532 133577888888888653221 111111111111
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCC-H----HHHHHHHHhcccHHHHHHH
Q 007648 118 ITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSH-I----EDFIEFLVKSKLWQEAAER 192 (594)
Q Consensus 118 ~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~-~----~~~~~~~~~~~~~~~a~~~ 192 (594)
.- ..+..-+.+...-+-..++....++|+. ++|++.++..++..|.. . +.+++.+...+.|.++..+
T Consensus 246 ~~-------e~~~~Rdt~~~~y~KrRLAmCarklGr~-~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 246 FW-------EAWHRRDTNVLVYAKRRLAMCARKLGRL-REAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred hh-------hhhhccccchhhhhHHHHHHHHHHhCCh-HHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 10 0111111110011222345555678988 99999999999888863 2 2456778888899988888
Q ss_pred HHHh
Q 007648 193 LASV 196 (594)
Q Consensus 193 ~~~~ 196 (594)
+.+-
T Consensus 318 L~kY 321 (539)
T PF04184_consen 318 LAKY 321 (539)
T ss_pred HHHh
Confidence 7664
No 258
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.65 E-value=0.17 Score=51.42 Aligned_cols=141 Identities=13% Similarity=0.169 Sum_probs=102.3
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCch-hH----h
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSV-EV----R 496 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~----~ 496 (594)
....|+.++.+..+.|.++.|...+.++....+..-.....+.+.++.+....|+..+|...++..+..... .. .
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 578899999999999999999999999998653221111178888899999999999999999999983221 10 0
Q ss_pred hhhh--c----c----CChhhhHHhhccHhhHHHHHHHHHHh------CChHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 007648 497 RRVA--A----D----GNEPVQMKLHKSLRLWTFYVDLEESL------GNLESTRAVYERILDLRIATPQIIINYALLLE 560 (594)
Q Consensus 497 ~~~~--~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~ 560 (594)
..+. . . .... ....-.-..++..++.+.... ++.+++.+.|.+|++..|....+|.+++.++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLD-KESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HHHhhccccccccccccchh-hhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 0000 0 0 0000 000011246678888888777 89999999999999999999999999999987
Q ss_pred Hhc
Q 007648 561 VWT 563 (594)
Q Consensus 561 ~~g 563 (594)
+.=
T Consensus 304 ~~~ 306 (352)
T PF02259_consen 304 KLL 306 (352)
T ss_pred HHH
Confidence 543
No 259
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.57 E-value=0.026 Score=57.29 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=75.4
Q ss_pred hcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhcc
Q 007648 435 TYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKS 514 (594)
Q Consensus 435 ~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 514 (594)
..++++.|+..|.+||.++|+++ .++-.-+...++.+++..|..=+.+|++.+|..
T Consensus 16 ~~~~fd~avdlysKaI~ldpnca----~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~-------------------- 71 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDPNCA----IYFANRALAHLKVESFGGALHDALKAIELDPTY-------------------- 71 (476)
T ss_pred ccchHHHHHHHHHHHHhcCCcce----eeechhhhhheeechhhhHHHHHHhhhhcCchh--------------------
Confidence 45677888888888888888776 555555555567777888888778888888741
Q ss_pred HhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHH--HHhchhhhhh
Q 007648 515 LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLL--EVWTLLHVFL 569 (594)
Q Consensus 515 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~--~~~g~~~~a~ 569 (594)
...++.-|....++|.+.+|+..|++...+.|++|.+...+-.+- ...-.|+.|+
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai 128 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAI 128 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcc
Confidence 244455556666677788888888888888888887766554442 2334555554
No 260
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.49 E-value=0.043 Score=52.24 Aligned_cols=67 Identities=13% Similarity=0.186 Sum_probs=60.8
Q ss_pred HhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHH
Q 007648 472 LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI 551 (594)
Q Consensus 472 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 551 (594)
.+.|+.++|..+|+-|+++.|. ++++...||.|....++.-+|-.+|-+|+..+|.+.++
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~--------------------~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPT--------------------NPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCC--------------------CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 4689999999999999999994 68999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 007648 552 IINYALL 558 (594)
Q Consensus 552 ~~~~~~~ 558 (594)
..+..+.
T Consensus 187 LvnR~RT 193 (472)
T KOG3824|consen 187 LVNRART 193 (472)
T ss_pred Hhhhhcc
Confidence 9887554
No 261
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.43 E-value=4.8 Score=43.40 Aligned_cols=43 Identities=21% Similarity=0.127 Sum_probs=32.8
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 007648 235 AIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMM 277 (594)
Q Consensus 235 ~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (594)
+.++.+...||.....+-...|+.+...|+++.|+..|-++-.
T Consensus 692 kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~ 734 (1636)
T KOG3616|consen 692 KAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC 734 (1636)
T ss_pred HHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh
Confidence 4455555668887777777779999999999999988876643
No 262
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.36 E-value=0.028 Score=34.53 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC
Q 007648 425 LWVAFAKLYETYKDIANARVIFDKAVQVNYKT 456 (594)
Q Consensus 425 ~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~ 456 (594)
+++.+|.++...|++++|+.+|++.+...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 45677777777788888888888888777764
No 263
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.11 Score=47.96 Aligned_cols=104 Identities=11% Similarity=0.040 Sum_probs=82.0
Q ss_pred HHHHHHHHHh--cCCchhHHHHHHHHHhcc-------CCCc-cc----CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007648 386 EQWHRRVKIF--EGNPTKQILTYTEAVRTV-------DPMK-AV----GKPHTLWVAFAKLYETYKDIANARVIFDKAVQ 451 (594)
Q Consensus 386 ~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~-------~~~~-~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~ 451 (594)
.+..+.|.-+ .|++.+|...|..||..+ .|.. .+ .....++++|++++...|++-++.+.....|.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 3344444433 378999999999998643 1211 00 12457889999999999999999999999999
Q ss_pred ccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCch
Q 007648 452 VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSV 493 (594)
Q Consensus 452 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 493 (594)
..|.|. .+++.-+......=+..+|+.=|.++++++|.
T Consensus 259 ~~~~nv----KA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 259 HHPGNV----KAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred cCCchH----HHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 999999 88898888776677899999999999999996
No 264
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.11 E-value=0.22 Score=39.27 Aligned_cols=48 Identities=13% Similarity=0.134 Sum_probs=40.9
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCch
Q 007648 442 ARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSV 493 (594)
Q Consensus 442 A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 493 (594)
....+++++..+|+++ ...+.++..+...|++++|.+.+-.+++.+|+
T Consensus 7 ~~~al~~~~a~~P~D~----~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 7 DIAALEAALAANPDDL----DARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHHHHSTT-H----HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred cHHHHHHHHHcCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 4567889999999999 89999999999999999999999999999985
No 265
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.11 E-value=0.56 Score=45.56 Aligned_cols=146 Identities=13% Similarity=0.096 Sum_probs=101.4
Q ss_pred cCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHh-c---CCChHHHHHHHHHHHh
Q 007648 39 EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVT-M---HKMPRIWIMYLETLTS 114 (594)
Q Consensus 39 ~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~---P~~~~lw~~y~~~~~~ 114 (594)
.|++.+|....++.|+.+|.+.-.|..-=... ...|+...-+..+++.+.. + |-.+-+.-.|+-.++.
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~--------fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAH--------FYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE 187 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHH--------HhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence 37888999999999999999888886532222 4457777778888888877 3 4456777888888889
Q ss_pred cccHHHHHHHHHHHHHhCCCCCHHHHHHH--HHHHHHHcCCchHHHHHHHHHHHhh-CCCCHH------HHHHHHHhccc
Q 007648 115 QKFITKARRTFDRALCALPVTQHDRIWEI--YLRFVEQEGIPIETSLRVYRRYLKY-DPSHIE------DFIEFLVKSKL 185 (594)
Q Consensus 115 ~~~~~~A~~~~~ral~~~p~~~~~~~w~~--~~~~~~~~~~~~~~a~~~~~~~l~~-~p~~~~------~~~~~~~~~~~ 185 (594)
+|-+++|.+.-+||++++|.+ -|.. .+...+..++. +++.+.-.+.-.. ..+... ..+-+++..+.
T Consensus 188 ~g~y~dAEk~A~ralqiN~~D----~Wa~Ha~aHVlem~~r~-Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~ae 262 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQINRFD----CWASHAKAHVLEMNGRH-KEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAE 262 (491)
T ss_pred hccchhHHHHHHhhccCCCcc----hHHHHHHHHHHHhcchh-hhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccc
Confidence 999999999999999999863 4544 34455556666 7777654432110 001110 12345667789
Q ss_pred HHHHHHHHHHhh
Q 007648 186 WQEAAERLASVL 197 (594)
Q Consensus 186 ~~~a~~~~~~~~ 197 (594)
|+.|.++|.+-+
T Consensus 263 ye~aleIyD~ei 274 (491)
T KOG2610|consen 263 YEKALEIYDREI 274 (491)
T ss_pred hhHHHHHHHHHH
Confidence 999999987654
No 266
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.09 E-value=0.038 Score=35.01 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhh
Q 007648 251 LWTSLADYYIRRELFEKARDIFEEGMMTV 279 (594)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (594)
+|..+|.++.+.|++++|+++|+++|...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 37789999999999999999999977543
No 267
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.99 E-value=0.052 Score=33.30 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhccc
Q 007648 251 LWTSLADYYIRRELFEKARDIFEEGMMTVVTV 282 (594)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 282 (594)
+++.+|..+...|++++|++.|+++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 57788999999999999999999999998863
No 268
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=1.8 Score=41.67 Aligned_cols=113 Identities=19% Similarity=0.245 Sum_probs=82.9
Q ss_pred CCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHH---HHHHHHHcCCch
Q 007648 79 ITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEI---YLRFVEQEGIPI 155 (594)
Q Consensus 79 ~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~---~~~~~~~~~~~~ 155 (594)
+..|++..|...|..++...|.+..+-..|+++++..|+.+.|..++.. .|.....+-|.. -+.+.......
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~----lP~~~~~~~~~~l~a~i~ll~qaa~~- 219 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA----LPLQAQDKAAHGLQAQIELLEQAAAT- 219 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh----CcccchhhHHHHHHHHHHHHHHHhcC-
Confidence 4678999999999999999999999999999999999999999988874 464333344444 22333333322
Q ss_pred HHHHHHHHHHHhhCCCCHH---HHHHHHHhcccHHHHHHHHHHhh
Q 007648 156 ETSLRVYRRYLKYDPSHIE---DFIEFLVKSKLWQEAAERLASVL 197 (594)
Q Consensus 156 ~~a~~~~~~~l~~~p~~~~---~~~~~~~~~~~~~~a~~~~~~~~ 197 (594)
.+ ..-+++-+..+|++.+ .++..+...|+.+.|...+-.++
T Consensus 220 ~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 220 PE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22 2344566778899886 34567888899999988776665
No 269
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.68 Score=43.02 Aligned_cols=96 Identities=14% Similarity=0.131 Sum_probs=71.1
Q ss_pred cCChhHHHHHHHHHHH--------hCCCChHHHHHHHHHHHHhccCC---CCCchhHHHHHHHHHHHHHhcCCChHHHHH
Q 007648 39 EAPFKKRFVIYERALK--------ALPGSYKLWHAYLIERLSIVKNL---PITHPEYETLNNTFERALVTMHKMPRIWIM 107 (594)
Q Consensus 39 ~~~~~~a~~~~e~al~--------~~P~s~~lW~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~al~~~P~~~~lw~~ 107 (594)
.|++.+|...|..|+- .-|.+++ |..+...-...+.+- ....|+|-++..-....|+.+|.++++++.
T Consensus 191 ~~~ykEA~~~YreAi~~l~~L~lkEkP~e~e-W~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~fr 269 (329)
T KOG0545|consen 191 LGRYKEASSKYREAIICLRNLQLKEKPGEPE-WLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFR 269 (329)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhccCCCChH-HHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 3778888888888763 4576666 776544332221111 145688889999999999999999999999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 007648 108 YLETLTSQKFITKARRTFDRALCALPVT 135 (594)
Q Consensus 108 y~~~~~~~~~~~~A~~~~~ral~~~p~~ 135 (594)
-+.....-=+.++|+.-|..+|.++|.-
T Consensus 270 RakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 270 RAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 8888887778888999999999988853
No 270
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=94.81 E-value=0.088 Score=53.54 Aligned_cols=89 Identities=9% Similarity=0.089 Sum_probs=69.6
Q ss_pred cCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccH
Q 007648 39 EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFI 118 (594)
Q Consensus 39 ~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~ 118 (594)
.+.++.|+..|.+|++.+|+++.+|..-+... +..+++..|..-+.+|++.+|.-.+.++.-|...++.+.+
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~--------lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAH--------LKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhh--------eeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 46778888888888888888887776654322 3457778888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhCCCC
Q 007648 119 TKARRTFDRALCALPVT 135 (594)
Q Consensus 119 ~~A~~~~~ral~~~p~~ 135 (594)
.+|...|+.+..+.|..
T Consensus 89 ~~A~~~l~~~~~l~Pnd 105 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPND 105 (476)
T ss_pred HHHHHHHHHhhhcCcCc
Confidence 88888888888888875
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.71 E-value=0.059 Score=34.14 Aligned_cols=28 Identities=14% Similarity=0.314 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007648 425 LWVAFAKLYETYKDIANARVIFDKAVQV 452 (594)
Q Consensus 425 ~~~~~a~~~~~~~~~~~A~~~~~kal~~ 452 (594)
.|..+|.++.+.|++++|+.+|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3677888888899999999999996654
No 272
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.66 E-value=0.094 Score=49.99 Aligned_cols=55 Identities=16% Similarity=0.286 Sum_probs=27.5
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTV 457 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~ 457 (594)
|+.++|..+|+.|+.. .|+ .+++.+.+|+|-+..+++-.|-++|-+||.+.|.+.
T Consensus 130 Gk~ekA~~lfeHAlal-aP~-----~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 130 GKLEKAMTLFEHALAL-APT-----NPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred cchHHHHHHHHHHHhc-CCC-----CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 4455555555555543 232 345555555555444555555555555555555554
No 273
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.59 E-value=3.4 Score=41.81 Aligned_cols=166 Identities=15% Similarity=0.145 Sum_probs=101.9
Q ss_pred CchhHHHHHHHHHHHHHh----cCCChHHHHHHHHHHHh---cccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH--
Q 007648 80 THPEYETLNNTFERALVT----MHKMPRIWIMYLETLTS---QKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQ-- 150 (594)
Q Consensus 80 ~~~~~~~A~~~~~~al~~----~P~~~~lw~~y~~~~~~---~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~-- 150 (594)
.-.+|+..+++.+..-.. .++.+.+-..||-.+.+ .|+.++|+.++..++...... .++.+-..+..+..
T Consensus 153 diqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~-~~d~~gL~GRIyKD~~ 231 (374)
T PF13281_consen 153 DIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENP-DPDTLGLLGRIYKDLF 231 (374)
T ss_pred hhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHHHH
Confidence 447889999999888877 57788999999999999 889999999999977655443 24555444444321
Q ss_pred -------cCCchHHHHHHHHHHHhhCCCCHH--HHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHH
Q 007648 151 -------EGIPIETSLRVYRRYLKYDPSHIE--DFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLL 221 (594)
Q Consensus 151 -------~~~~~~~a~~~~~~~l~~~p~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 221 (594)
... +++|+..|+++.+.+|+.-. -++.++...|.-.+.....+++. ..+..++
T Consensus 232 ~~s~~~d~~~-ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~-----------------~~l~~ll 293 (374)
T PF13281_consen 232 LESNFTDRES-LDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIG-----------------VKLSSLL 293 (374)
T ss_pred HHcCccchHH-HHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHH-----------------HHHHHHH
Confidence 111 27899999999999876432 34444444443222221111111 1111111
Q ss_pred hhcccccccCcHHHHHHHHHhhccchhHHHH--HHHHHHHHHhccHHHHHHHHHHHHhhhccc
Q 007648 222 TTHATEISGLNVDAIIRGGIRKFTDEVGRLW--TSLADYYIRRELFEKARDIFEEGMMTVVTV 282 (594)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 282 (594)
.+.+.. .+. .+-| -.++....-.|++++|.+.++++++..|..
T Consensus 294 g~kg~~----------------~~~--~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 294 GRKGSL----------------EKM--QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred Hhhccc----------------ccc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 111100 000 1223 344555666899999999999999886554
No 274
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.56 E-value=0.029 Score=54.33 Aligned_cols=86 Identities=19% Similarity=0.091 Sum_probs=71.1
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCC
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~ 476 (594)
|.++.|++.|.+||...|+ ...++..-+..+.+.+....|+.-+..|++++|+.. .-+-.-+.....+|+
T Consensus 128 G~~~~ai~~~t~ai~lnp~------~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa----~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPP------LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA----KGYKFRGYAERLLGN 197 (377)
T ss_pred cchhhhhcccccccccCCc------hhhhcccccceeeeccCCchhhhhhhhhhccCcccc----cccchhhHHHHHhhc
Confidence 7799999999999996444 566777778888899999999999999999999987 443444444556899
Q ss_pred hHHHHHHHHHHhcCCc
Q 007648 477 FKGALELMRRATAEPS 492 (594)
Q Consensus 477 ~~~A~~~~~~al~~~p 492 (594)
.++|...++.+++++-
T Consensus 198 ~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 198 WEEAAHDLALACKLDY 213 (377)
T ss_pred hHHHHHHHHHHHhccc
Confidence 9999999999999865
No 275
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.55 E-value=0.053 Score=49.54 Aligned_cols=60 Identities=22% Similarity=0.254 Sum_probs=54.2
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCc
Q 007648 469 EMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT 548 (594)
Q Consensus 469 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~ 548 (594)
.+..+.++.+.|.++|.+|+.+.|+ ....|..+++...+-|+++.|.+.|++.++++|++
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~--------------------w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPE--------------------WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCch--------------------hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3445678999999999999999995 56889999999999999999999999999999976
No 276
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.54 Score=45.64 Aligned_cols=99 Identities=11% Similarity=0.054 Sum_probs=74.9
Q ss_pred HHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHH
Q 007648 388 WHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWC 465 (594)
Q Consensus 388 ~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~ 465 (594)
+-.-|..+. +++..|+..|.++|+..-++.. ...-+|.+-|-+..-.|++..|+.-..+|++.+|.+. ..++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~d--lnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~----Ka~~ 157 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPD--LNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL----KAYI 157 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCcc--HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh----hhhh
Confidence 334455443 5788899999999875323221 2566777778787788999999999999999999988 8888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcCCc
Q 007648 466 EWAEMELRHKNFKGALELMRRATAEPS 492 (594)
Q Consensus 466 ~~~~~~~~~~~~~~A~~~~~~al~~~p 492 (594)
+=+.+.+....++.|..+.+.+++.+-
T Consensus 158 R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 158 RGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 888888888888888888888877765
No 277
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.36 E-value=1.4 Score=46.66 Aligned_cols=150 Identities=13% Similarity=0.045 Sum_probs=97.6
Q ss_pred cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHH-----hcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHH
Q 007648 396 EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYE-----TYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEM 470 (594)
Q Consensus 396 ~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~ 470 (594)
.||-+.++..+.+|.+.-.-........-+++....... ...+.+.|.+++++..+..|+.+ -..+.-|++
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~----lfl~~~gR~ 276 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSA----LFLFFEGRL 276 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHH
Confidence 388899999999988731111000011122222222111 24578999999999999999997 667777888
Q ss_pred HHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchH
Q 007648 471 ELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550 (594)
Q Consensus 471 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~ 550 (594)
+...|++++|.+.|++++..... .+.+. . ..+..++-.+..++++++|...+.+.++.+.-.+.
T Consensus 277 ~~~~g~~~~Ai~~~~~a~~~q~~--------------~~Ql~-~-l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka 340 (468)
T PF10300_consen 277 ERLKGNLEEAIESFERAIESQSE--------------WKQLH-H-LCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKA 340 (468)
T ss_pred HHHhcCHHHHHHHHHHhccchhh--------------HHhHH-H-HHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHH
Confidence 88999999999999999954332 00000 1 11122223334668999999999999997765544
Q ss_pred HH-HHHHHHHHHhchh
Q 007648 551 II-INYALLLEVWTLL 565 (594)
Q Consensus 551 ~~-~~~~~~~~~~g~~ 565 (594)
++ +-.|-++...|+.
T Consensus 341 ~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 341 FYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHHHHhhccc
Confidence 44 3456777778877
No 278
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.16 E-value=0.064 Score=49.02 Aligned_cols=56 Identities=13% Similarity=0.190 Sum_probs=35.6
Q ss_pred hcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchh
Q 007648 435 TYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVE 494 (594)
Q Consensus 435 ~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 494 (594)
+.++.+.+-+.|.+|+...|+.. .-|++++.+..+.|+++.|.+.|++.++++|++
T Consensus 7 ~~~D~~aaaely~qal~lap~w~----~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWA----AGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhh----hhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 45566666666666666666665 566666666666666666666666666666653
No 279
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.07 E-value=0.099 Score=31.16 Aligned_cols=32 Identities=16% Similarity=0.246 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 007648 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYK 455 (594)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~ 455 (594)
..|..+|.++...|+++.|...++++++..|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 34566666666666666777666666666554
No 280
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=93.90 E-value=1.4 Score=44.77 Aligned_cols=154 Identities=10% Similarity=0.023 Sum_probs=96.3
Q ss_pred hhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhcc----CCCc-------ccC---------CchH---HHHHHHH
Q 007648 377 LLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTV----DPMK-------AVG---------KPHT---LWVAFAK 431 (594)
Q Consensus 377 ~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~----~~~~-------~~~---------~~~~---~~~~~a~ 431 (594)
.+..+|-++++.++++.+.. |+.+.|.++.++|+-.+ +|.. ..+ .+.. +...+.+
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 36889999999999988874 77777777777776321 1111 001 1223 3445666
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCC-ChhhHHHHHHHHHHHH-HhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhH
Q 007648 432 LYETYKDIANARVIFDKAVQVNYK-TVDHLASIWCEWAEME-LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQM 509 (594)
Q Consensus 432 ~~~~~~~~~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 509 (594)
...+.|-+..|.++.+=.+..+|. +| -.-+.+++++ ++.++++--..+++.......... +.
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP----~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~---~~--------- 175 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDP----LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNW---LS--------- 175 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCc----chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhh---hh---------
Confidence 777899999999999999999999 87 4334445543 678888877777776544211000 00
Q ss_pred HhhccHhhHHHHHHHHHHhCCh---------------HHHHHHHHHHHhccCCch
Q 007648 510 KLHKSLRLWTFYVDLEESLGNL---------------ESTRAVYERILDLRIATP 549 (594)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~g~~---------------~~A~~~~~~al~~~P~~~ 549 (594)
.=|.+-...+-.+..+|+. +.|...+.+|+...|.-.
T Consensus 176 ---~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 176 ---LLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred ---hCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 0012222233333344555 789999999998887543
No 281
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.82 E-value=0.096 Score=31.22 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhccCCc
Q 007648 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIAT 548 (594)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~ 548 (594)
..|..++..+...|++++|..+++++++.+|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 457788899999999999999999999998863
No 282
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.76 E-value=0.48 Score=48.26 Aligned_cols=136 Identities=10% Similarity=0.016 Sum_probs=92.6
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHH-HhccCC---Chhh-HHHHHHHHHHHHHhcCChHHHHHHHHHHhc-CCchhH
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKA-VQVNYK---TVDH-LASIWCEWAEMELRHKNFKGALELMRRATA-EPSVEV 495 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~ka-l~~~p~---~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~ 495 (594)
.+...+-.++++...|++.+|.+.+-.. +...|- .|.- -.-+|..+|-+.++.|.+.-+..+|.+|++ .+.. +
T Consensus 239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q-L 317 (696)
T KOG2471|consen 239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ-L 317 (696)
T ss_pred CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHH-H
Confidence 4556667788888899999998887653 333333 2211 113577778777888999999999999997 2211 0
Q ss_pred hhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 007648 496 RRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLE 560 (594)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~ 560 (594)
.. ++.++.-+-..--.+..+.+.-|-.+...|++-.|.++|.++++.+-.+|.+|.+++.+..
T Consensus 318 ~~--g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 318 RN--GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred hc--cCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 00 0111100000000245677778888889999999999999999999999999999998754
No 283
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.74 E-value=1.1 Score=47.55 Aligned_cols=123 Identities=11% Similarity=0.059 Sum_probs=80.7
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCC
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~ 476 (594)
.+.+.|..+.+......|. ..-..+.-|.++...|+.++|++.|++|+....+-+..-.-.++.++-...-+.+
T Consensus 247 ~~~~~a~~lL~~~~~~yP~------s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~ 320 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPN------SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHD 320 (468)
T ss_pred CCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHch
Confidence 3456788888888876543 2333446688888899999999999999863322221111345666666677899
Q ss_pred hHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCCh-------HHHHHHHHHHHhc
Q 007648 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNL-------ESTRAVYERILDL 544 (594)
Q Consensus 477 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-------~~A~~~~~~al~~ 544 (594)
+++|...|.+.++.+.-. ..-+....+-.+...|+. ++|...+.++-..
T Consensus 321 w~~A~~~f~~L~~~s~WS-------------------ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 321 WEEAAEYFLRLLKESKWS-------------------KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHHHhccccH-------------------HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 999999999999876520 012223334455566666 7777777776654
No 284
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=0.23 Score=48.05 Aligned_cols=87 Identities=15% Similarity=0.211 Sum_probs=59.7
Q ss_pred HHHHHhhhhhchhhhhhhhhccCCCC----hHHHHHH--HHHhcCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHH
Q 007648 359 LARLEHLMNRRPELANSVLLRQNPHN----VEQWHRR--VKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKL 432 (594)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~l~~~p~~----~~~~~~~--~~~~~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~ 432 (594)
...|+.+...|... |+....| .-.+.+. +.++.||+..|+.--.+|+.. +|. ...+++.-|.+
T Consensus 94 ~Kryk~A~~~Yt~G-----lk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~-~P~-----h~Ka~~R~Akc 162 (390)
T KOG0551|consen 94 EKRYKDAVESYTEG-----LKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL-KPT-----HLKAYIRGAKC 162 (390)
T ss_pred hhhHHHHHHHHHHH-----HhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-Ccc-----hhhhhhhhhHH
Confidence 46788877665543 3333332 2334444 344558888777777777774 453 56888888999
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCC
Q 007648 433 YETYKDIANARVIFDKAVQVNYKT 456 (594)
Q Consensus 433 ~~~~~~~~~A~~~~~kal~~~p~~ 456 (594)
...+..++.|....+..++++-+.
T Consensus 163 ~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHH
Confidence 999999999999999998877555
No 285
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.68 E-value=0.95 Score=42.23 Aligned_cols=107 Identities=15% Similarity=0.183 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHhc---cCCChhhHHHHHHHHHHHHHhcCC-------hHHHHHHHHHHhcCCchhHhhhhhccCChhh
Q 007648 438 DIANARVIFDKAVQV---NYKTVDHLASIWCEWAEMELRHKN-------FKGALELMRRATAEPSVEVRRRVAADGNEPV 507 (594)
Q Consensus 438 ~~~~A~~~~~kal~~---~p~~~~~~~~~~~~~~~~~~~~~~-------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 507 (594)
+++.|+..|.-|+-. ....+..+..+++.++=++...|+ +..|...|++|++...... ..
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~-------~~--- 161 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPI-------EG--- 161 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCC-------CC---
Confidence 455555555555431 122222333455555555544554 3455666666665433100 00
Q ss_pred hHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCc-hHHHHHHHHH
Q 007648 508 QMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT-PQIIINYALL 558 (594)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~-~~~~~~~~~~ 558 (594)
.++..+....|++..++|++++|.++|.+.+...-.+ +....+.++=
T Consensus 162 ----~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~ 209 (214)
T PF09986_consen 162 ----MDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARD 209 (214)
T ss_pred ----chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence 0134567788999999999999999999999943222 2355555543
No 286
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.42 E-value=0.74 Score=45.21 Aligned_cols=138 Identities=12% Similarity=0.054 Sum_probs=92.6
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHH--HHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhh
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLA--SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRV 499 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 499 (594)
.......++..+.-.+.++++.+.|++|++..-.+.+.+. .++..++.+.-+.+++++|.-...+|..+.-+-.
T Consensus 121 ~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~---- 196 (518)
T KOG1941|consen 121 GGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG---- 196 (518)
T ss_pred cchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC----
Confidence 3456667788888889999999999999996433333222 3788888888889999999998888887754300
Q ss_pred hccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccC------CchHHHHHHHHHHHHhchhhhhh
Q 007648 500 AADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRI------ATPQIIINYALLLEVWTLLHVFL 569 (594)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P------~~~~~~~~~~~~~~~~g~~~~a~ 569 (594)
.++.... ......++++-.+..+|..-.|.+.-+.|.++.- -.+.-..-++++|...|+.+.|-
T Consensus 197 --l~d~~~k----yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af 266 (518)
T KOG1941|consen 197 --LKDWSLK----YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAF 266 (518)
T ss_pred --cCchhHH----HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHH
Confidence 0000000 0123456667777888988888888888877532 22334456778888777655543
No 287
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.96 E-value=0.98 Score=40.77 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=80.2
Q ss_pred HHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cCCChhhHH
Q 007648 386 EQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQV--NYKTVDHLA 461 (594)
Q Consensus 386 ~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~--~p~~~~~~~ 461 (594)
.++..++..+. |+.+.|+..|.++...+.. .+.-.++++.+..+....+++..+...+.+|-.. .+.+++..+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~---~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~n 113 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTS---PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 35566777774 8999999999998875422 1335788888888888899999999999998774 455666666
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcCCc
Q 007648 462 SIWCEWAEMELRHKNFKGALELMRRATAEPS 492 (594)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 492 (594)
.+-..-|...+..+++..|-+.|-.+.....
T Consensus 114 rlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 114 RLKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 6666666667789999999999988876554
No 288
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.51 E-value=0.85 Score=42.54 Aligned_cols=95 Identities=19% Similarity=0.177 Sum_probs=64.5
Q ss_pred CchhHHHHHHHHHhccCCCc-ccCCchHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhcc--CCChhhHHHHHHHH
Q 007648 398 NPTKQILTYTEAVRTVDPMK-AVGKPHTLWVAFAKLYETYKD-------IANARVIFDKAVQVN--YKTVDHLASIWCEW 467 (594)
Q Consensus 398 ~~~~a~~~y~~Ai~~~~~~~-~~~~~~~~~~~~a~~~~~~~~-------~~~A~~~~~kal~~~--p~~~~~~~~~~~~~ 467 (594)
.+++|+..|.-|+....-.. .....+.+++.+|=++...|+ +..|...|++|+... |.....-..+.+..
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLi 171 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLI 171 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Confidence 46778888888875311000 011246778888877877777 456777777777643 33332223567778
Q ss_pred HHHHHhcCChHHHHHHHHHHhcCCc
Q 007648 468 AEMELRHKNFKGALELMRRATAEPS 492 (594)
Q Consensus 468 ~~~~~~~~~~~~A~~~~~~al~~~p 492 (594)
|.+..+.|++++|.+.|.+++...-
T Consensus 172 geL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 172 GELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 8899999999999999999998743
No 289
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.27 E-value=0.092 Score=51.01 Aligned_cols=90 Identities=18% Similarity=0.131 Sum_probs=74.1
Q ss_pred hcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhcc
Q 007648 435 TYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKS 514 (594)
Q Consensus 435 ~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 514 (594)
..|.++.|++.|-+|++++|... .++-..+...++.++...|+.=+..|+.++|+.
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a----~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds-------------------- 181 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLA----ILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS-------------------- 181 (377)
T ss_pred cCcchhhhhcccccccccCCchh----hhcccccceeeeccCCchhhhhhhhhhccCccc--------------------
Confidence 47889999999999999999998 777788888888999999999999999999962
Q ss_pred HhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCc
Q 007648 515 LRLWTFYVDLEESLGNLESTRAVYERILDLRIAT 548 (594)
Q Consensus 515 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~ 548 (594)
..-+...+.....+|++++|...+..|.+++-+.
T Consensus 182 a~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE 215 (377)
T KOG1308|consen 182 AKGYKFRGYAERLLGNWEEAAHDLALACKLDYDE 215 (377)
T ss_pred ccccchhhHHHHHhhchHHHHHHHHHHHhccccH
Confidence 2334444555567799999999999998876443
No 290
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.60 E-value=1.5 Score=39.48 Aligned_cols=90 Identities=11% Similarity=0.024 Sum_probs=67.8
Q ss_pred cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcC
Q 007648 396 EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK 475 (594)
Q Consensus 396 ~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~ 475 (594)
.+++++|...++.++.. +.+.. .-+-+-++++.+...+|.+|.|.+++...-...... .+-..-|+++...|
T Consensus 102 ~~~~d~A~aqL~~~l~~-t~De~--lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~-----~~~elrGDill~kg 173 (207)
T COG2976 102 ANNLDKAEAQLKQALAQ-TKDEN--LKALAALRLARVQLQQKKADAALKTLDTIKEESWAA-----IVAELRGDILLAKG 173 (207)
T ss_pred hccHHHHHHHHHHHHcc-chhHH--HHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH-----HHHHHhhhHHHHcC
Confidence 38899999999999863 22211 123456788999999999999999988765332222 34456788899999
Q ss_pred ChHHHHHHHHHHhcCCch
Q 007648 476 NFKGALELMRRATAEPSV 493 (594)
Q Consensus 476 ~~~~A~~~~~~al~~~p~ 493 (594)
+-++||..|++|++..++
T Consensus 174 ~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 174 DKQEARAAYEKALESDAS 191 (207)
T ss_pred chHHHHHHHHHHHHccCC
Confidence 999999999999998764
No 291
>PRK10941 hypothetical protein; Provisional
Probab=91.54 E-value=1.7 Score=41.99 Aligned_cols=60 Identities=8% Similarity=-0.129 Sum_probs=30.8
Q ss_pred HhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHH
Q 007648 472 LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI 551 (594)
Q Consensus 472 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 551 (594)
.+.++++.|..+.++.+...|+ ++.-|--.|-++.++|.+..|+.-++..++..|++|.+
T Consensus 192 ~~~~~~~~AL~~~e~ll~l~P~--------------------dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 192 MEEKQMELALRASEALLQFDPE--------------------DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHcCcHHHHHHHHHHHHHhCCC--------------------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 3445555555555555555553 33334444444555555555555555555555555543
No 292
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.33 E-value=14 Score=39.01 Aligned_cols=145 Identities=11% Similarity=0.050 Sum_probs=93.1
Q ss_pred hhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhc----cCCCcc--cC---------Cch---HHHHHHHHHHHhc
Q 007648 377 LLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRT----VDPMKA--VG---------KPH---TLWVAFAKLYETY 436 (594)
Q Consensus 377 ~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~----~~~~~~--~~---------~~~---~~~~~~a~~~~~~ 436 (594)
.+...|-+++..++.+.+.. |+.+.+..+.++|+-. ..|... .+ .+. -+...+.+...+.
T Consensus 276 lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~R 355 (665)
T KOG2422|consen 276 LLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQR 355 (665)
T ss_pred eeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhc
Confidence 46667899999999888874 6666555555555521 123211 00 011 2334556667788
Q ss_pred CCHHHHHHHHHHHHhccCC-ChhhHHHHHHHHHHHH-HhcCChHHHHHHHHHH-----hcCCchhHhhhhhccCChhhhH
Q 007648 437 KDIANARVIFDKAVQVNYK-TVDHLASIWCEWAEME-LRHKNFKGALELMRRA-----TAEPSVEVRRRVAADGNEPVQM 509 (594)
Q Consensus 437 ~~~~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a-----l~~~p~~~~~~~~~~~~~~~~~ 509 (594)
|=...|..+.+-.++.+|. +| -....+++++ ++..+|.=.+..++.. +..-|+
T Consensus 356 GC~rTA~E~cKlllsLdp~eDP----l~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN---------------- 415 (665)
T KOG2422|consen 356 GCWRTALEWCKLLLSLDPSEDP----LGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN---------------- 415 (665)
T ss_pred CChHHHHHHHHHHhhcCCcCCc----hhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC----------------
Confidence 9999999999999999999 88 5555556644 6777887777776655 333443
Q ss_pred HhhccHhhHHHHHHHHHHhCC---hHHHHHHHHHHHhccC
Q 007648 510 KLHKSLRLWTFYVDLEESLGN---LESTRAVYERILDLRI 546 (594)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~~P 546 (594)
-.+-+..+.++.+... -+.|+..+.+|+...|
T Consensus 416 -----~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 416 -----FGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred -----chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 2333455555555544 4567888888888777
No 293
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.93 E-value=4.6 Score=36.80 Aligned_cols=54 Identities=17% Similarity=0.126 Sum_probs=39.0
Q ss_pred cHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCC----chHHHHHHHHHHHHhchhhhh
Q 007648 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIA----TPQIIINYALLLEVWTLLHVF 568 (594)
Q Consensus 514 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~----~~~~~~~~~~~~~~~g~~~~a 568 (594)
++.+...++-+|.+ -+.++++.++-+++++.+. +|+++..++-++.++|++++|
T Consensus 140 t~elq~aLAtyY~k-rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 140 TAELQYALATYYTK-RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 56677777777754 3677788888888886533 467777888888888887776
No 294
>PRK10941 hypothetical protein; Provisional
Probab=90.69 E-value=1.5 Score=42.35 Aligned_cols=57 Identities=11% Similarity=-0.127 Sum_probs=43.2
Q ss_pred CCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 007648 79 ITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVT 135 (594)
Q Consensus 79 ~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~ 135 (594)
...++++.|.++.++.+.++|+++.-|.+-|-++.+.|.+..|+.-++.-++.+|..
T Consensus 192 ~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 192 MEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 456777777777777777777777777777777777777777777777777777764
No 295
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=90.62 E-value=6.7 Score=38.27 Aligned_cols=36 Identities=8% Similarity=0.005 Sum_probs=29.0
Q ss_pred hhccCCCChHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 007648 377 LLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRT 412 (594)
Q Consensus 377 ~l~~~p~~~~~~~~~~~~~~~~~~~a~~~y~~Ai~~ 412 (594)
++..||.+..++..++.-+..-+.+|..+|++|++.
T Consensus 210 ALeIN~eCA~AyvLLAEEEa~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 210 ALEINNECATAYVLLAEEEATTIVDAERLFKQALKA 245 (556)
T ss_pred HHhcCchhhhHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 688999999998887766555677788888888874
No 296
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.62 E-value=3.8 Score=36.98 Aligned_cols=109 Identities=10% Similarity=0.075 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhcc
Q 007648 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAAD 502 (594)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 502 (594)
..++..+|.++.+.|+.+.|.+.|.++.... ..+.+.-++++..+.+-+-.+++..+...+.+|-......
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~-------- 106 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYC-TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG-------- 106 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc--------
Confidence 5778899999999999999999999988754 3344455788888888888999999999999887653310
Q ss_pred CChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccC
Q 007648 503 GNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRI 546 (594)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P 546 (594)
++.+.. ..+-..-|-.....|+|.+|-+.|-.++....
T Consensus 107 ~d~~~~------nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 107 GDWERR------NRLKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred chHHHH------HHHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 000000 12222333344456899999888877766554
No 297
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.44 E-value=1.5 Score=30.49 Aligned_cols=32 Identities=13% Similarity=0.012 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh
Q 007648 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTV 457 (594)
Q Consensus 426 ~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~ 457 (594)
.+.+|.-+.+.|++++|+...+.+|+.+|+|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 45566667789999999999999999999997
No 298
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.01 E-value=1.7 Score=30.26 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=27.6
Q ss_pred HHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHH
Q 007648 523 DLEESLGNLESTRAVYERILDLRIATPQIIINYALL 558 (594)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~ 558 (594)
--..++|++++|++..+++|+..|+|.++..-...+
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 334689999999999999999999999887644333
No 299
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.49 E-value=14 Score=38.67 Aligned_cols=60 Identities=20% Similarity=0.209 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH----------------HHHHHhc--cCCChhhHHHHHHHHHHHHHhcCChHHHHHHHH
Q 007648 424 TLWVAFAKLYETYKDIANARVI----------------FDKAVQV--NYKTVDHLASIWCEWAEMELRHKNFKGALELMR 485 (594)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~----------------~~kal~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 485 (594)
+.....+.++++.|-++.|..+ ++.|+++ ..+++ ..|-.+|..-+++|+++-|.+.|+
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~----~~W~~Lg~~AL~~g~~~lAe~c~~ 371 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDP----EKWKQLGDEALRQGNIELAEECYQ 371 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTH----HHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcH----HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445556666666666665544 2223331 23345 677777777777777777777777
Q ss_pred HH
Q 007648 486 RA 487 (594)
Q Consensus 486 ~a 487 (594)
++
T Consensus 372 k~ 373 (443)
T PF04053_consen 372 KA 373 (443)
T ss_dssp HC
T ss_pred hh
Confidence 66
No 300
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.43 E-value=9.3 Score=36.22 Aligned_cols=110 Identities=13% Similarity=0.157 Sum_probs=77.8
Q ss_pred cCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHh-cCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhcc
Q 007648 436 YKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELR-HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKS 514 (594)
Q Consensus 436 ~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 514 (594)
...-++|.++-+.++..+|-+- .+|..--.++.. +.++.+=...+.+.++.+|. +
T Consensus 56 ~E~S~RAl~LT~d~i~lNpAnY----TVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK--------------------N 111 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPANY----TVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK--------------------N 111 (318)
T ss_pred cccCHHHHHHHHHHHHhCcccc----hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc--------------------c
Confidence 4445788888888888888776 677655444433 34566777778888887772 5
Q ss_pred HhhHHHHHHHHHHhCChH-HHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhh
Q 007648 515 LRLWTFYVDLEESLGNLE-STRAVYERILDLRIATPQIIINYALLLEVWTLLHVFL 569 (594)
Q Consensus 515 ~~~~~~~~~~~~~~g~~~-~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~ 569 (594)
.++|.+.--+...+|++. .-..+-.+++..+-.|-.+|.+.-.+++.-+++++=|
T Consensus 112 YQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL 167 (318)
T KOG0530|consen 112 YQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDEL 167 (318)
T ss_pred hhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHH
Confidence 678877777777778776 6677778888877777788877777776666665544
No 301
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.42 E-value=0.73 Score=29.77 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhc
Q 007648 516 RLWTFYVDLEESLGNLESTRAVYERILDL 544 (594)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 544 (594)
..+..++.++...|++++|..++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34677888899999999999999999984
No 302
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=88.89 E-value=19 Score=36.58 Aligned_cols=110 Identities=12% Similarity=0.041 Sum_probs=65.8
Q ss_pred hHhHHHHhhCCCCHHHHHHHHHHH-HcCChhHHHHHHHHHHHhCC--------------------------CChHHHHHH
Q 007648 14 LLYEEELLRNPFSLKLWWRYLVAK-REAPFKKRFVIYERALKALP--------------------------GSYKLWHAY 66 (594)
Q Consensus 14 ~~~e~~l~~~P~~~~~w~~~~~~~-~~~~~~~a~~~~e~al~~~P--------------------------~s~~lW~~~ 66 (594)
..+-..|.++|+..+.-+...+.. ..|+...|..+.+|||-.+- .+-.+|...
T Consensus 27 ~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal 106 (360)
T PF04910_consen 27 NALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLAL 106 (360)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHH
Confidence 445567899999999999999965 48898888888888875432 122333332
Q ss_pred HHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCC-ChHHHHHHHHHH-HhcccHHHHHHHHHHH
Q 007648 67 LIERLSIVKNLPITHPEYETLNNTFERALVTMHK-MPRIWIMYLETL-TSQKFITKARRTFDRA 128 (594)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~-~~~lw~~y~~~~-~~~~~~~~A~~~~~ra 128 (594)
..+.+.. ...|-+..|.+..+-.+.++|. +|-.-...+.++ ++.++++-...+++..
T Consensus 107 ~r~i~~L-----~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 107 FRYIQSL-----GRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHHH-----HhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 2222111 2345667777777777777766 443323333333 4455555555555543
No 303
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.62 E-value=6.3 Score=38.58 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=47.3
Q ss_pred HhcCCHHHHHHHHHHHHh----ccCCChhhHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhcCC
Q 007648 434 ETYKDIANARVIFDKAVQ----VNYKTVDHLASIWCEWAEMELRHK-NFKGALELMRRATAEP 491 (594)
Q Consensus 434 ~~~~~~~~A~~~~~kal~----~~p~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~ 491 (594)
+++|+.+.|.-.+.|+-. .+|+....+..+.+..|......+ +++.|..++++|....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l 66 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDIL 66 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 468889999999888754 357777778888888888888888 9999999999998874
No 304
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.80 E-value=22 Score=34.72 Aligned_cols=129 Identities=15% Similarity=0.098 Sum_probs=82.1
Q ss_pred cCCchhHHHHHHHHHhcc---CCCcccCCchHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcc-------CCCh---hhHH
Q 007648 396 EGNPTKQILTYTEAVRTV---DPMKAVGKPHTLWVAFAKLYETYK-DIANARVIFDKAVQVN-------YKTV---DHLA 461 (594)
Q Consensus 396 ~~~~~~a~~~y~~Ai~~~---~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~kal~~~-------p~~~---~~~~ 461 (594)
+|+.+.|..+|.|+-... +|+. ........++.|.-....+ +++.|...+++|+.+. ...+ +...
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~-~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDM-AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHH-HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 478888899998887643 3321 1235677888888888888 9999999999998762 1122 1233
Q ss_pred HHHHHHHHHHHhcCC---hHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHH
Q 007648 462 SIWCEWAEMELRHKN---FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVY 538 (594)
Q Consensus 462 ~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 538 (594)
.+...++..++..+. .++|..+++-+-...|+ .+.++.....+..+.++.+++.+++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~--------------------~~~~~~L~l~il~~~~~~~~~~~~L 144 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN--------------------KPEVFLLKLEILLKSFDEEEYEEIL 144 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC--------------------CcHHHHHHHHHHhccCChhHHHHHH
Confidence 466667777766554 44566666666666664 2344444445554556666777777
Q ss_pred HHHHhcc
Q 007648 539 ERILDLR 545 (594)
Q Consensus 539 ~~al~~~ 545 (594)
.+++.-.
T Consensus 145 ~~mi~~~ 151 (278)
T PF08631_consen 145 MRMIRSV 151 (278)
T ss_pred HHHHHhc
Confidence 7776643
No 305
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=87.56 E-value=14 Score=39.23 Aligned_cols=133 Identities=14% Similarity=0.052 Sum_probs=89.9
Q ss_pred HHHHHHHHHhccCCCcccCCchHHHHHH--HHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCCh-H
Q 007648 402 QILTYTEAVRTVDPMKAVGKPHTLWVAF--AKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNF-K 478 (594)
Q Consensus 402 a~~~y~~Ai~~~~~~~~~~~~~~~~~~~--a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~-~ 478 (594)
+...+...+.. .+. .+++.++. ...+...++...+......++..+|+++ .....++......|.. .
T Consensus 50 ~~~a~~~~~~~-~~~-----~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~L~~ale~~~~~~~ 119 (620)
T COG3914 50 AIYALLLGIAI-NDV-----NPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENC----PAVQNLAAALELDGLQFL 119 (620)
T ss_pred HHHHHHccCcc-CCC-----CHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccc----hHHHHHHHHHHHhhhHHH
Confidence 55555555542 332 24443333 4455567888899999999999999998 7777777765445554 4
Q ss_pred HHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHH
Q 007648 479 GALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALL 558 (594)
Q Consensus 479 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~ 558 (594)
.+..+-+.+....|++.. .+ ..-..++. .+++...+|+..++....++++.+.|.+|++.-.+.-.
T Consensus 120 ~~~~~~~~a~~~~~~~~~-~~------------~~~~~~~~-~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 120 ALADISEIAEWLSPDNAE-FL------------GHLIRFYQ-LGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHHHHHhcCcchHH-HH------------hhHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 455555568888886320 00 00113333 67888889999999999999999999999887766555
No 306
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.17 E-value=5.6 Score=41.83 Aligned_cols=141 Identities=14% Similarity=0.049 Sum_probs=92.9
Q ss_pred hhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHH-hcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChH
Q 007648 400 TKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYE-TYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFK 478 (594)
Q Consensus 400 ~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 478 (594)
+......-.|++..+. +..+ -+++.+|+ ..|+.-+|...+.+|+-..|..... -..+.+|.++.+.|...
T Consensus 196 ~~~~~~~~~glq~~~~------sw~l-H~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kd--i~lLSlaTiL~RaG~sa 266 (886)
T KOG4507|consen 196 DDIGHLIHEGLQKNTS------SWVL-HNMASFYWRIKGEPYQAVECAMRALHFSSRHNKD--IALLSLATVLHRAGFSA 266 (886)
T ss_pred HHHHHHHHHhhhcCch------hHHH-HHHHHHHHHHcCChhhhhHHHHHHhhhCCccccc--chhhhHHHHHHHccccc
Confidence 3444555566664322 2222 25566777 4788999999999988765554321 36778888888899888
Q ss_pred HHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHH
Q 007648 479 GALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALL 558 (594)
Q Consensus 479 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~ 558 (594)
+|--++-.|+...|.-. ++ .+..+.++..+|.+......|..+.+..|..-...-....+
T Consensus 267 dA~iILhAA~~dA~~~t------------------~n--~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ 326 (886)
T KOG4507|consen 267 DAAVILHAALDDADFFT------------------SN--YYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHA 326 (886)
T ss_pred chhheeehhccCCcccc------------------cc--ceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHH
Confidence 88888888877766310 11 34556677777888888888888888888766655555555
Q ss_pred HHHhchhhhhh
Q 007648 559 LEVWTLLHVFL 569 (594)
Q Consensus 559 ~~~~g~~~~a~ 569 (594)
...+.++..++
T Consensus 327 ISC~~~L~~kl 337 (886)
T KOG4507|consen 327 ISCQQKLEQKL 337 (886)
T ss_pred HHHHHHHHHHH
Confidence 55555544444
No 307
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.98 E-value=11 Score=38.89 Aligned_cols=139 Identities=14% Similarity=0.154 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhcC--CHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHh-cCChHHHHHHHHHHhcCCchhHhhhh
Q 007648 423 HTLWVAFAKLYETYK--DIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELR-HKNFKGALELMRRATAEPSVEVRRRV 499 (594)
Q Consensus 423 ~~~~~~~a~~~~~~~--~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~ 499 (594)
..+.+.+|..+...| ++..+++.++-.+...|... .-..-.+.+|.+++. .+|++.|+..+++|.-+..
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~-veart~LqLg~lL~~yT~N~elAksHLekA~~i~~------- 78 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFL-VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISK------- 78 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHH-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHc-------
Q ss_pred hccCChhhhHHhhccHhh--HHHHHHHHHHhC-ChHHHHHHHHHHHhccCCch----HHHHHHHHHHHHhchhhhhhhcc
Q 007648 500 AADGNEPVQMKLHKSLRL--WTFYVDLEESLG-NLESTRAVYERILDLRIATP----QIIINYALLLEVWTLLHVFLLHV 572 (594)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g-~~~~A~~~~~~al~~~P~~~----~~~~~~~~~~~~~g~~~~a~~~~ 572 (594)
...-|.|..+ ...+++++.... .+..|+..+.+|+++.-..| .....++++..-..|+.-|++..
T Consensus 79 --------~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 79 --------SIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred --------ccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Q ss_pred cCccc
Q 007648 573 PFTFS 577 (594)
Q Consensus 573 ~~~~~ 577 (594)
.+-.+
T Consensus 151 avga~ 155 (629)
T KOG2300|consen 151 AVGAE 155 (629)
T ss_pred hcccc
No 308
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.40 E-value=14 Score=32.41 Aligned_cols=113 Identities=13% Similarity=0.037 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhcc
Q 007648 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAAD 502 (594)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 502 (594)
....+.....-...++.+.+..++.-.--.-|..+ .+-..-+...+..|++.+|+.+|+.+....|.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~----e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~--------- 76 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFP----ELDLFDGWLHIVRGDWDDALRLLRELEERAPG--------- 76 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCch----HHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC---------
Confidence 34455666666678899999999988888899999 66666666777899999999999998888774
Q ss_pred CChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Q 007648 503 GNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEV 561 (594)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~ 561 (594)
.+..=..++-.+..+|+.+= +..=+.++... .+|++..-...++..
T Consensus 77 -----------~p~~kALlA~CL~~~~D~~W-r~~A~evle~~-~d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 77 -----------FPYAKALLALCLYALGDPSW-RRYADEVLESG-ADPDARALVRALLAR 122 (160)
T ss_pred -----------ChHHHHHHHHHHHHcCChHH-HHHHHHHHhcC-CChHHHHHHHHHHHh
Confidence 22222333344445666542 44455566644 466665544444443
No 309
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=86.27 E-value=8.9 Score=31.24 Aligned_cols=93 Identities=15% Similarity=0.074 Sum_probs=57.3
Q ss_pred HHHcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcc----CCCCCc-----hhHHHHHHHHHHHHHhcCCChHHHH
Q 007648 36 AKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVK----NLPITH-----PEYETLNNTFERALVTMHKMPRIWI 106 (594)
Q Consensus 36 ~~~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~----~~~~~~-----~~~~~A~~~~~~al~~~P~~~~lw~ 106 (594)
+...||.-+|.++.+..+..++.+...|..... +..+. .. +.. .-.-.+...|.++..+.|.++...+
T Consensus 6 ~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~--QG~if~~lA~~-ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 6 YFARGNHIKALEIIEDLISRHGEDESSWLLHRL--QGTIFYKLAKK-TENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHccCHHHHHHHHHHHHHHccCCCchHHHHHH--HhHHHHHHHHh-ccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 445799999999999999999999988844322 11100 00 111 1124566677777777777766666
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHh
Q 007648 107 MYLETLTSQKFITKARRTFDRALCA 131 (594)
Q Consensus 107 ~y~~~~~~~~~~~~A~~~~~ral~~ 131 (594)
.+++-+-...-++++..-.+++|..
T Consensus 83 ~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 83 ELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 6665544444456666666666553
No 310
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.28 E-value=76 Score=36.34 Aligned_cols=233 Identities=12% Similarity=0.107 Sum_probs=127.0
Q ss_pred hHhHHHHhhCCCCHHHHHHHHHHHHcC---ChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHH
Q 007648 14 LLYEEELLRNPFSLKLWWRYLVAKREA---PFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNT 90 (594)
Q Consensus 14 ~~~e~~l~~~P~~~~~w~~~~~~~~~~---~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~ 90 (594)
..+-.+++-+|+-.-.++.-++-.... +..--..+||.|...+- ..++....++..++++ +..++|.+.
T Consensus 1026 LLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifk-kf~~n~~A~~VLie~i-------~~ldRA~ef 1097 (1666)
T KOG0985|consen 1026 LLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFK-KFDMNVSAIQVLIENI-------GSLDRAYEF 1097 (1666)
T ss_pred hHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHH-HhcccHHHHHHHHHHh-------hhHHHHHHH
Confidence 445567777887777777766643321 11122234444444322 1222233334433332 445666665
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhC-
Q 007648 91 FERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYD- 169 (594)
Q Consensus 91 ~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~- 169 (594)
-+|+ +.|.+|..++..-.+.+.+.+|.+.|-+|= +|. -+....+...+.|.+ ++-.+.+.-+-+.-
T Consensus 1098 Ae~~-----n~p~vWsqlakAQL~~~~v~dAieSyikad--Dps-----~y~eVi~~a~~~~~~-edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1098 AERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKAD--DPS-----NYLEVIDVASRTGKY-EDLVKYLLMARKKVR 1164 (1666)
T ss_pred HHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhcC--CcH-----HHHHHHHHHHhcCcH-HHHHHHHHHHHHhhc
Confidence 5554 668999999999999999999999997762 454 355566667778888 88888877665543
Q ss_pred -CCCHHHHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcH-HHHHHHHHhhccch
Q 007648 170 -PSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNV-DAIIRGGIRKFTDE 247 (594)
Q Consensus 170 -p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~ 247 (594)
|.-...++=.|.+.++..+-... +..|.... .... |+. -+ +..++.+--.+..
T Consensus 1165 E~~id~eLi~AyAkt~rl~elE~f----i~gpN~A~---------i~~v-------Gdr----cf~~~~y~aAkl~y~~- 1219 (1666)
T KOG0985|consen 1165 EPYIDSELIFAYAKTNRLTELEEF----IAGPNVAN---------IQQV-------GDR----CFEEKMYEAAKLLYSN- 1219 (1666)
T ss_pred CccchHHHHHHHHHhchHHHHHHH----hcCCCchh---------HHHH-------hHH----HhhhhhhHHHHHHHHH-
Confidence 33222343344555554443332 21111100 0000 000 00 1122222222221
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHH
Q 007648 248 VGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297 (594)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~ 297 (594)
.+-|-.++..+...|+++.|.+.-++|-+. ..|..+..+.++-++
T Consensus 1220 -vSN~a~La~TLV~LgeyQ~AVD~aRKAns~----ktWK~VcfaCvd~~E 1264 (1666)
T KOG0985|consen 1220 -VSNFAKLASTLVYLGEYQGAVDAARKANST----KTWKEVCFACVDKEE 1264 (1666)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHhhhccch----hHHHHHHHHHhchhh
Confidence 456888999999999999998888776433 233344444444333
No 311
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=84.60 E-value=8.7 Score=30.42 Aligned_cols=59 Identities=8% Similarity=0.113 Sum_probs=39.2
Q ss_pred CCchhHHHHHHHHHhccCCCcccC---CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVG---KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK 455 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~ 455 (594)
+++..|.+.+.+............ ....+.+.+|.++...|++++|...+++|+++..+
T Consensus 12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 677777666655554322211111 13566788888888999999999999999986433
No 312
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.38 E-value=5.3 Score=42.44 Aligned_cols=102 Identities=15% Similarity=0.215 Sum_probs=76.8
Q ss_pred HHHHHHHHhc-CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHH
Q 007648 387 QWHRRVKIFE-GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWC 465 (594)
Q Consensus 387 ~~~~~~~~~~-~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~ 465 (594)
.|..-...+. .++..+.+.|+..+..++.+.....+..+.-.++.+|....++|+|.+++++|=+.+|.++ +...++
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~--l~q~~~ 434 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP--LCQLLM 434 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH--HHHHHH
Confidence 4666555554 7899999999999998777654444678888889999999999999999999999999998 223333
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcCCc
Q 007648 466 EWAEMELRHKNFKGALELMRRATAEPS 492 (594)
Q Consensus 466 ~~~~~~~~~~~~~~A~~~~~~al~~~p 492 (594)
..+. .-.|+.++|............
T Consensus 435 ~~~~--~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 435 LQSF--LAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred HHHH--HHhcchHHHHHHHHHHHhhhc
Confidence 3332 235778888888777665433
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.72 E-value=2.3 Score=27.25 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007648 424 TLWVAFAKLYETYKDIANARVIFDKAVQV 452 (594)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~kal~~ 452 (594)
..+.++|.++...|++++|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34556677777777777777777777653
No 314
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.65 E-value=28 Score=33.17 Aligned_cols=159 Identities=14% Similarity=0.207 Sum_probs=83.8
Q ss_pred CCCCCCCCcchHhHHHHhhCC-CCHHHHHHHHH--HHHcCChhHHHHHHHHHHHhCCCChHHHHH-HHHHHHHhccCCCC
Q 007648 4 SKELYPSEDDLLYEEELLRNP-FSLKLWWRYLV--AKREAPFKKRFVIYERALKALPGSYKLWHA-YLIERLSIVKNLPI 79 (594)
Q Consensus 4 ~~~~~~~~~~~~~e~~l~~~P-~~~~~w~~~~~--~~~~~~~~~a~~~~e~al~~~P~s~~lW~~-~~~~~~~~~~~~~~ 79 (594)
|+.|.-++.+.-||+.=..+. .|.+.=..|-. ...+.+++.|...|++.++..|...+ |-. .+...++. +.
T Consensus 2 ~D~~MdddEDYg~EYsdds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKge-WGFKALKQmiKI----~f 76 (440)
T KOG1464|consen 2 SDDFMDDDEDYGFEYSDDSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGE-WGFKALKQMIKI----NF 76 (440)
T ss_pred CccccccchhcCceeccccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccch-hHHHHHHHHHHH----Hh
Confidence 455554445555555433321 23333333333 22367899999999999999987665 443 33332221 24
Q ss_pred CchhHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHH----HHHHHH
Q 007648 80 THPEYETLNNTFERALVTM------HKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEI----YLRFVE 149 (594)
Q Consensus 80 ~~~~~~~A~~~~~~al~~~------P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~----~~~~~~ 149 (594)
..+++++-...|.+.|... ..|.+--.....+.....+++-....|+..+..........+|.. ++.+..
T Consensus 77 ~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~f 156 (440)
T KOG1464|consen 77 RLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYF 156 (440)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhhe
Confidence 4567777777776666532 122222233333334455667777777766654332222566643 444444
Q ss_pred HcCCchHHHHHHHHHHHhh
Q 007648 150 QEGIPIETSLRVYRRYLKY 168 (594)
Q Consensus 150 ~~~~~~~~a~~~~~~~l~~ 168 (594)
..+.+ .+..+++.+.-..
T Consensus 157 d~~e~-~kl~KIlkqLh~S 174 (440)
T KOG1464|consen 157 DRGEY-TKLQKILKQLHQS 174 (440)
T ss_pred eHHHH-HHHHHHHHHHHHH
Confidence 44445 5555555544433
No 315
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=83.55 E-value=14 Score=35.89 Aligned_cols=62 Identities=15% Similarity=0.168 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHh
Q 007648 103 RIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLK 167 (594)
Q Consensus 103 ~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~ 167 (594)
.+...+++.+...++.+.+...+++.+..+|.+ +.+|..+...+...|+. ..|+..|++.-+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~--E~~~~~lm~~y~~~g~~-~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYD--EPAYLRLMEAYLVNGRQ-SAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccc--hHHHHHHHHHHHHcCCc-hHHHHHHHHHHH
Confidence 444566666666667777777777777777764 56666666666666666 667776666554
No 316
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.16 E-value=22 Score=34.33 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 007648 104 IWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRY 165 (594)
Q Consensus 104 lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~ 165 (594)
+....+..+...|.+.+|.++.+|+++++|-+ ...|..+...+..+|+. -.+.+.|++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~--e~~nk~lm~~la~~gD~-is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLS--EQDNKGLMASLATLGDE-ISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhh--hHHHHHHHHHHHHhccc-hhhhhHHHHH
Confidence 33467778888999999999999999999976 78899998888889987 7788877764
No 317
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.12 E-value=40 Score=37.25 Aligned_cols=160 Identities=13% Similarity=0.131 Sum_probs=0.0
Q ss_pred cCCCChHHHHHHHHHhcCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcc--CCC
Q 007648 380 QNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYE-TYKDIANARVIFDKAVQVN--YKT 456 (594)
Q Consensus 380 ~~p~~~~~~~~~~~~~~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~kal~~~--p~~ 456 (594)
.++....-++.++.. |+.+++-+++..++.... -+.+.+.+|.++. ...+++.|+..++|++.+. ++-
T Consensus 25 ~~~~~l~~Y~kLI~~-------ai~CL~~~~~~~~l~p~~--ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~ 95 (608)
T PF10345_consen 25 KSEEQLKQYYKLIAT-------AIKCLEAVLKQFKLSPRQ--EARVRLRLASILLEETENLDLAETYLEKAILLCERHRL 95 (608)
T ss_pred CChhhHHHHHHHHHH-------HHHHHHHHhccCCCCHHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Q ss_pred hhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHH-------HHhC
Q 007648 457 VDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLE-------ESLG 529 (594)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~g 529 (594)
.+.....-+.++.++.+.+... |...++++++..-+ .....|.....+. . +
T Consensus 96 ~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~-------------------~~~~~w~~~frll~~~l~~~~--~ 153 (608)
T PF10345_consen 96 TDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET-------------------YGHSAWYYAFRLLKIQLALQH--K 153 (608)
T ss_pred HHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc-------------------cCchhHHHHHHHHHHHHHHhc--c
Q ss_pred ChHHHHHHHHHHHhcc--CCchHHHHHH----HHHHHHhchhhhhhh
Q 007648 530 NLESTRAVYERILDLR--IATPQIIINY----ALLLEVWTLLHVFLL 570 (594)
Q Consensus 530 ~~~~A~~~~~~al~~~--P~~~~~~~~~----~~~~~~~g~~~~a~~ 570 (594)
++..|...+++..... +.++.+.... +.+....|..+++++
T Consensus 154 d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~ 200 (608)
T PF10345_consen 154 DYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLE 200 (608)
T ss_pred cHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHH
No 318
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=82.97 E-value=17 Score=29.97 Aligned_cols=106 Identities=15% Similarity=0.082 Sum_probs=66.4
Q ss_pred HHHHHHHHHH--HhcCChHHHHHHHHHHhcCC---c-hhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHH
Q 007648 462 SIWCEWAEME--LRHKNFKGALELMRRATAEP---S-VEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTR 535 (594)
Q Consensus 462 ~~~~~~~~~~--~~~~~~~~A~~~~~~al~~~---p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 535 (594)
..|+.+++.+ ++.|-+++|..-+++|+... | +.. .....| |..-+..+......+|+|++++
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEa-----------FDh~GF-DA~chA~Ls~A~~~Lgry~e~L 75 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEA-----------FDHDGF-DAFCHAGLSGALAGLGRYDECL 75 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS--------------HHHH-HHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhh-----------cccccH-HHHHHHHHHHHHHhhccHHHHH
Confidence 3455555554 45688999999999988542 3 100 000001 2333455666777889998877
Q ss_pred HHHHHHHh-------ccCCchHHHH----HHHHHHHHhchhhhhhhcccCcccch
Q 007648 536 AVYERILD-------LRIATPQIII----NYALLLEVWTLLHVFLLHVPFTFSGL 579 (594)
Q Consensus 536 ~~~~~al~-------~~P~~~~~~~----~~~~~~~~~g~~~~a~~~~~~~~~~~ 579 (594)
..-+++|- ++-+....|+ +.+..+...|..++|+..+++-.+-+
T Consensus 76 ~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMi 130 (144)
T PF12968_consen 76 QSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMI 130 (144)
T ss_dssp HHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 77666664 6778888886 46778889999999998776655443
No 319
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=82.73 E-value=3.9 Score=32.40 Aligned_cols=59 Identities=17% Similarity=0.142 Sum_probs=45.0
Q ss_pred HhcCCHHHHHHHHHHHHhccCCCh-----hhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCc
Q 007648 434 ETYKDIANARVIFDKAVQVNYKTV-----DHLASIWCEWAEMELRHKNFKGALELMRRATAEPS 492 (594)
Q Consensus 434 ~~~~~~~~A~~~~~kal~~~p~~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 492 (594)
.+.|++..|.+.+.+.+....... ..+....+.++.+....|++++|...+++|+++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 368999999888888776432221 13445677788888889999999999999998865
No 320
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=82.66 E-value=1.4e+02 Score=37.54 Aligned_cols=165 Identities=12% Similarity=0.101 Sum_probs=103.0
Q ss_pred HHHHHHHHHhc--CCchhHHHHHHHHHhccCCC-cccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHH
Q 007648 386 EQWHRRVKIFE--GNPTKQILTYTEAVRTVDPM-KAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLAS 462 (594)
Q Consensus 386 ~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~ 462 (594)
+-|-.....-. .+..+-+-.+.+++.....+ +......+.|+.+|++....|.+++|...+-+|.+.. -| .
T Consensus 1630 d~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~----~ 1703 (2382)
T KOG0890|consen 1630 DNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LP----E 1703 (2382)
T ss_pred hhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cc----h
Confidence 44544443332 22344445555655432111 1123468999999999999999999999999998765 34 7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCC-chhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCCh--HHHHHHHH
Q 007648 463 IWCEWAEMELRHKNFKGALELMRRATAEP-SVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNL--ESTRAVYE 539 (594)
Q Consensus 463 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~A~~~~~ 539 (594)
+.+..|..+.+.|+-..|..+++..++.+ |+.. .-..+.+...+...-...-..++......|++ ++..+.|.
T Consensus 1704 i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~----~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~ 1779 (2382)
T KOG0890|consen 1704 IVLERAKLLWQTGDELNALSVLQEILSKNFPDLH----TPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYH 1779 (2382)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhhccccc----CCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 88899999999999999999999999654 4310 00000111011000112233344444455665 46789999
Q ss_pred HHHhccCCchHHHHHHHHHHH
Q 007648 540 RILDLRIATPQIIINYALLLE 560 (594)
Q Consensus 540 ~al~~~P~~~~~~~~~~~~~~ 560 (594)
.+.+..|..-.-++++|..+.
T Consensus 1780 ~~~ail~ewe~~hy~l~~yy~ 1800 (2382)
T KOG0890|consen 1780 DAKAILPEWEDKHYHLGKYYD 1800 (2382)
T ss_pred HHHHHcccccCceeeHHHHHH
Confidence 999999966666666665544
No 321
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.36 E-value=10 Score=34.54 Aligned_cols=82 Identities=13% Similarity=0.041 Sum_probs=57.7
Q ss_pred HHhcCCHHHHHHHHHHHHhc-cCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHh
Q 007648 433 YETYKDIANARVIFDKAVQV-NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKL 511 (594)
Q Consensus 433 ~~~~~~~~~A~~~~~kal~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 511 (594)
++.+.+-+.|+..|-++=.. .-+++ ++-+.+|.++. ..+.++|+.++-+++++.+.+- +
T Consensus 116 ~Wsr~~d~~A~~~fL~~E~~~~l~t~----elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~--------~------- 175 (203)
T PF11207_consen 116 HWSRFGDQEALRRFLQLEGTPELETA----ELQYALATYYT-KRDPEKTIQLLLRALELSNPDD--------N------- 175 (203)
T ss_pred HhhccCcHHHHHHHHHHcCCCCCCCH----HHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCC--------C-------
Confidence 44343347777777766553 33556 77788887765 5678899999999998866310 0
Q ss_pred hccHhhHHHHHHHHHHhCChHHHH
Q 007648 512 HKSLRLWTFYVDLEESLGNLESTR 535 (594)
Q Consensus 512 ~~~~~~~~~~~~~~~~~g~~~~A~ 535 (594)
-++.++..++.++.++|+++.|-
T Consensus 176 -~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 176 -FNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred -CCHHHHHHHHHHHHHhcchhhhh
Confidence 16788888999999999888763
No 322
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.82 E-value=1e+02 Score=35.32 Aligned_cols=159 Identities=11% Similarity=0.171 Sum_probs=82.1
Q ss_pred HHHHHHHHHhc---CCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHcCCchHHHHHHH
Q 007648 88 NNTFERALVTM---HKMPRIWIMYLETLTSQKFITKARRTFDRALCALPV--TQHDRIWEIYLRFVEQEGIPIETSLRVY 162 (594)
Q Consensus 88 ~~~~~~al~~~---P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~--~~~~~~w~~~~~~~~~~~~~~~~a~~~~ 162 (594)
+.+.++.+... ..+|+--..-.+..+..+=+.+..+++++.+- .|. +.+..+ +.++.+-.-..+. .+..+..
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL-~~S~Fse~~nL-QnLLiLtAikad~-trVm~YI 1043 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVL-DNSVFSENRNL-QNLLILTAIKADR-TRVMEYI 1043 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhc-CCcccccchhh-hhhHHHHHhhcCh-HHHHHHH
Confidence 44555555431 23343333444556666667888888888764 443 222222 2222222222233 4555555
Q ss_pred HHHHhhCCCCHHHHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHh
Q 007648 163 RRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIR 242 (594)
Q Consensus 163 ~~~l~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (594)
++.=.. +....+.+....+-+++|..+|++.-.+ ..-.+.+-.+- .+.+..++-+-
T Consensus 1044 ~rLdny---Da~~ia~iai~~~LyEEAF~ifkkf~~n---------------~~A~~VLie~i-----~~ldRA~efAe- 1099 (1666)
T KOG0985|consen 1044 NRLDNY---DAPDIAEIAIENQLYEEAFAIFKKFDMN---------------VSAIQVLIENI-----GSLDRAYEFAE- 1099 (1666)
T ss_pred HHhccC---CchhHHHHHhhhhHHHHHHHHHHHhccc---------------HHHHHHHHHHh-----hhHHHHHHHHH-
Confidence 543222 2223455666777788888888765310 00001111110 01122221111
Q ss_pred hccchhHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 007648 243 KFTDEVGRLWTSLADYYIRRELFEKARDIFEEG 275 (594)
Q Consensus 243 ~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 275 (594)
.+ +.+.+|..+|....+.|...+|++.|-+|
T Consensus 1100 ~~--n~p~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1100 RC--NEPAVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred hh--CChHHHHHHHHHHHhcCchHHHHHHHHhc
Confidence 11 12579999999999999999999988775
No 323
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=81.67 E-value=9 Score=40.15 Aligned_cols=99 Identities=19% Similarity=0.271 Sum_probs=59.5
Q ss_pred cccHHHHHHHHH--HHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHHHHHHHHhcccHHHHHHH
Q 007648 115 QKFITKARRTFD--RALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAER 192 (594)
Q Consensus 115 ~~~~~~A~~~~~--ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~a~~~ 192 (594)
.++++.+.+..+ +.+...| .......+.|.+..|-+ +.|.++ -.+++.-..+..+.|+++.|.++
T Consensus 274 ~~d~~~v~~~i~~~~ll~~i~----~~~~~~i~~fL~~~G~~-e~AL~~--------~~D~~~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLPNIP----KDQGQSIARFLEKKGYP-ELALQF--------VTDPDHRFELALQLGNLDIALEI 340 (443)
T ss_dssp TT-HHH-----HHHHTGGG------HHHHHHHHHHHHHTT-H-HHHHHH--------SS-HHHHHHHHHHCT-HHHHHHH
T ss_pred cCChhhhhhhhhhhhhcccCC----hhHHHHHHHHHHHCCCH-HHHHhh--------cCChHHHhHHHHhcCCHHHHHHH
Confidence 566777666654 2233344 34556677788888877 666654 23344445666777887777775
Q ss_pred HHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHH
Q 007648 193 LASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIF 272 (594)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~ 272 (594)
.+++ +....|-.+|+.-..+|+++-|..+|
T Consensus 341 a~~~--------------------------------------------------~~~~~W~~Lg~~AL~~g~~~lAe~c~ 370 (443)
T PF04053_consen 341 AKEL--------------------------------------------------DDPEKWKQLGDEALRQGNIELAEECY 370 (443)
T ss_dssp CCCC--------------------------------------------------STHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred HHhc--------------------------------------------------CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2111 01468999999999999999999999
Q ss_pred HHHH
Q 007648 273 EEGM 276 (594)
Q Consensus 273 ~~al 276 (594)
+++=
T Consensus 371 ~k~~ 374 (443)
T PF04053_consen 371 QKAK 374 (443)
T ss_dssp HHCT
T ss_pred Hhhc
Confidence 9863
No 324
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=80.59 E-value=24 Score=28.80 Aligned_cols=27 Identities=15% Similarity=0.050 Sum_probs=21.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCCh
Q 007648 431 KLYETYKDIANARVIFDKAVQVNYKTV 457 (594)
Q Consensus 431 ~~~~~~~~~~~A~~~~~kal~~~p~~~ 457 (594)
.-+...||.-+|..+++..+..++++.
T Consensus 4 ~~~~~rGnhiKAL~iied~i~~h~~~~ 30 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLISRHGEDE 30 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHHHccCCC
Confidence 334568888888888888888877776
No 325
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=80.31 E-value=96 Score=33.92 Aligned_cols=27 Identities=7% Similarity=0.186 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHH
Q 007648 249 GRLWTSLADYYIRRELFEKARDIFEEG 275 (594)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~a 275 (594)
..+|...|+.+.....++.|++.|.+.
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467888888888888888888888875
No 326
>PF13041 PPR_2: PPR repeat family
Probab=80.18 E-value=7 Score=26.51 Aligned_cols=45 Identities=4% Similarity=-0.049 Sum_probs=33.8
Q ss_pred cHhhHHHHHHHHHHhCChHHHHHHHHHHHhcc-CCchHHHHHHHHH
Q 007648 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLR-IATPQIIINYALL 558 (594)
Q Consensus 514 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~~~~~ 558 (594)
|...|...+..+.+.|++++|.++|++..+.. +-+..++.-+...
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~ 47 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILING 47 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34678888999999999999999999999853 3334555554443
No 327
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=79.86 E-value=42 Score=36.46 Aligned_cols=32 Identities=13% Similarity=0.337 Sum_probs=24.8
Q ss_pred hccchhHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 007648 243 KFTDEVGRLWTSLADYYIRRELFEKARDIFEEG 275 (594)
Q Consensus 243 ~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 275 (594)
..|++ .++.-.+|+++.+.|.-++|.+.|-+.
T Consensus 847 ~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 847 TLPED-SELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred hcCcc-cchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 34544 467888899999999999998888664
No 328
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=79.23 E-value=66 Score=31.45 Aligned_cols=141 Identities=17% Similarity=0.113 Sum_probs=92.0
Q ss_pred HHHHHHHHHhc------CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHh----cCCHHHHHHHHHHHHhc-cC
Q 007648 386 EQWHRRVKIFE------GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYET----YKDIANARVIFDKAVQV-NY 454 (594)
Q Consensus 386 ~~~~~~~~~~~------~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~kal~~-~p 454 (594)
..-..++..+. .+..+|...|..+...- .+..-..+|.++.. ..|+.+|...|++|.+. ++
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g--------~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAADG--------LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV 145 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc--------cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh
Confidence 44445555553 36888999999776632 35677778888875 34899999999999976 33
Q ss_pred CChhhHHHHHHHHHHHHHhcC-------ChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHH
Q 007648 455 KTVDHLASIWCEWAEMELRHK-------NFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEES 527 (594)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~-------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (594)
... ...+.++.++...+ +.+.|...|.++...... .....++.++..
T Consensus 146 ~a~----~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~----------------------~a~~~lg~~y~~ 199 (292)
T COG0790 146 EAA----LAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNP----------------------DAQLLLGRMYEK 199 (292)
T ss_pred hHH----HHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCH----------------------HHHHHHHHHHHc
Confidence 321 23445555443321 334788888888766432 233333433322
Q ss_pred -hC---ChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhc
Q 007648 528 -LG---NLESTRAVYERILDLRIATPQIIINYALLLEVWT 563 (594)
Q Consensus 528 -~g---~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g 563 (594)
.| ++++|..+|.+|-+... +....+++ ++...|
T Consensus 200 G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 200 GLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred CCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 33 78999999999999875 78888888 555566
No 329
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.01 E-value=3.2 Score=23.80 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 007648 426 WVAFAKLYETYKDIANARVIFD 447 (594)
Q Consensus 426 ~~~~a~~~~~~~~~~~A~~~~~ 447 (594)
.+.+|..+...|++++|+.+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3444555555555555555543
No 330
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.74 E-value=5.3 Score=30.20 Aligned_cols=44 Identities=9% Similarity=0.088 Sum_probs=35.8
Q ss_pred HhCChHHHHHHHHHHHhccCCchHHHHHHHHH---HHHhchhhhhhh
Q 007648 527 SLGNLESTRAVYERILDLRIATPQIIINYALL---LEVWTLLHVFLL 570 (594)
Q Consensus 527 ~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~---~~~~g~~~~a~~ 570 (594)
...+.++|+..++++++..++.++-|..+|.+ +...|++.++|.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678999999999999999999888766655 556788888873
No 331
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.74 E-value=90 Score=33.34 Aligned_cols=146 Identities=14% Similarity=0.086 Sum_probs=84.0
Q ss_pred HhhCCCCHHHHHHHHHHHH-cCChhHHHHHHHHHH-------HhC--CC------------ChHHHHHHHHHHHHhccCC
Q 007648 20 LLRNPFSLKLWWRYLVAKR-EAPFKKRFVIYERAL-------KAL--PG------------SYKLWHAYLIERLSIVKNL 77 (594)
Q Consensus 20 l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al-------~~~--P~------------s~~lW~~~~~~~~~~~~~~ 77 (594)
|...|+..+.-+....... .||.+.+..+.+||| ... |. +-..++..-.+....
T Consensus 277 L~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l---- 352 (665)
T KOG2422|consen 277 LISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSL---- 352 (665)
T ss_pred eccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHH----
Confidence 3456888888888777553 677665555555544 321 22 222222222222211
Q ss_pred CCCchhHHHHHHHHHHHHHhcCC-ChHHHHHHHHHH-HhcccHHHHHHHHHHH-----HHhCCCCCHHHHHHHHHHHHHH
Q 007648 78 PITHPEYETLNNTFERALVTMHK-MPRIWIMYLETL-TSQKFITKARRTFDRA-----LCALPVTQHDRIWEIYLRFVEQ 150 (594)
Q Consensus 78 ~~~~~~~~~A~~~~~~al~~~P~-~~~lw~~y~~~~-~~~~~~~~A~~~~~ra-----l~~~p~~~~~~~w~~~~~~~~~ 150 (594)
...|=+..|.+.++-.+.++|. +|-.....+.++ .+..+++=+.++++.. +...|+. .+=.+++.|+..
T Consensus 353 -~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~---~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 353 -AQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNF---GYSLALARFFLR 428 (665)
T ss_pred -HhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCc---hHHHHHHHHHHh
Confidence 2234468888888888899887 776666666655 5566777777777655 4444542 222344555543
Q ss_pred cCCc--hHHHHHHHHHHHhhCCCCH
Q 007648 151 EGIP--IETSLRVYRRYLKYDPSHI 173 (594)
Q Consensus 151 ~~~~--~~~a~~~~~~~l~~~p~~~ 173 (594)
.... -..|...+.+|++.+|...
T Consensus 429 ~~~~~~rqsa~~~l~qAl~~~P~vl 453 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQALKHHPLVL 453 (665)
T ss_pred cCChhhHHHHHHHHHHHHHhCcHHH
Confidence 3321 1467778888888888654
No 332
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=77.93 E-value=11 Score=36.61 Aligned_cols=65 Identities=8% Similarity=0.017 Sum_probs=56.9
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE 490 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 490 (594)
+..+...++..+...|+++.+...+++.+..+|.+- .+|..+...+++.|+...|+..|++.-+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E----~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDE----PAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccch----HHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 456667777778889999999999999999999998 89999999999999999999999987664
No 333
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.93 E-value=3.2 Score=23.79 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHH
Q 007648 251 LWTSLADYYIRRELFEKARDIFEE 274 (594)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~~ 274 (594)
+.+.+|..+...|+.++|+.++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 577899999999999999998864
No 334
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=77.28 E-value=82 Score=34.07 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=26.5
Q ss_pred cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 007648 245 TDEVGRLWTSLADYYIRRELFEKARDIFEEGMM 277 (594)
Q Consensus 245 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (594)
|.-.++.++.+|+++.+..++++|.+.|-+|=.
T Consensus 800 Pe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 800 PEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred ccccccccchHHHHhhhhhhHHHHHHHHHHhcc
Confidence 333356899999999999999999999988754
No 335
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=76.57 E-value=10 Score=37.57 Aligned_cols=66 Identities=14% Similarity=0.342 Sum_probs=53.2
Q ss_pred chhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHH
Q 007648 399 PTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEW 467 (594)
Q Consensus 399 ~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~ 467 (594)
.++++.++...|+.+|.- .+++..|+-+|.++...|.++..+.+|++|+.....-.+.|..+....
T Consensus 119 ~eei~~~L~~li~~IP~A---~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~di 184 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDA---KKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDI 184 (353)
T ss_pred HHHHHHHHHHHHhcCchH---HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 567888999888877652 347899999999999999999999999999998877665555544444
No 336
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=76.36 E-value=74 Score=30.45 Aligned_cols=160 Identities=16% Similarity=0.166 Sum_probs=82.0
Q ss_pred hhhhhhhccCCCChHHHHHHHHHhc---CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHH-HHHHHHH
Q 007648 372 LANSVLLRQNPHNVEQWHRRVKIFE---GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIA-NARVIFD 447 (594)
Q Consensus 372 ~~~~~~l~~~p~~~~~~~~~~~~~~---~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~A~~~~~ 447 (594)
.++..+++.+|.|...|...-.++. .+..+-+...+..+.. .|. +-.+|-+--.+.+..|++. +-....+
T Consensus 64 ~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~-npK-----NYQvWHHRr~ive~l~d~s~rELef~~ 137 (318)
T KOG0530|consen 64 QLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIED-NPK-----NYQVWHHRRVIVELLGDPSFRELEFTK 137 (318)
T ss_pred HHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-Ccc-----chhHHHHHHHHHHHhcCcccchHHHHH
Confidence 3455566666666666655444432 2444445555554443 221 3355655555555555555 5555566
Q ss_pred HHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHH-
Q 007648 448 KAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEE- 526 (594)
Q Consensus 448 kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 526 (594)
+.+..+.+|- .+|-.-.=+....++++.=...-.+.++.+- .+-..|.+.--+..
T Consensus 138 ~~l~~DaKNY----HaWshRqW~~r~F~~~~~EL~y~~~Lle~Di--------------------~NNSAWN~Ryfvi~~ 193 (318)
T KOG0530|consen 138 LMLDDDAKNY----HAWSHRQWVLRFFKDYEDELAYADELLEEDI--------------------RNNSAWNQRYFVITN 193 (318)
T ss_pred HHHhccccch----hhhHHHHHHHHHHhhHHHHHHHHHHHHHHhh--------------------hccchhheeeEEEEe
Confidence 6665555554 4444333333333444444444444433322 12244543211100
Q ss_pred HhCC-----hHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Q 007648 527 SLGN-----LESTRAVYERILDLRIATPQIIINYALLLEV 561 (594)
Q Consensus 527 ~~g~-----~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~ 561 (594)
..|- .+.-.+.--+.|.+.|+|-.+|.-+.-++..
T Consensus 194 ~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 194 TKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred ccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 0222 2344566677888999999999988888875
No 337
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=76.06 E-value=69 Score=33.65 Aligned_cols=56 Identities=16% Similarity=0.065 Sum_probs=38.1
Q ss_pred HhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHH----hchhhhhhhcccCcccchhhh
Q 007648 527 SLGNLESTRAVYERILDLRIATPQIIINYALLLEV----WTLLHVFLLHVPFTFSGLCMF 582 (594)
Q Consensus 527 ~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~----~g~~~~a~~~~~~~~~~~~~~ 582 (594)
...++++|+++....++.+-.+.-+.-++..+++. +.+.++-+...-..++|..++
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~ 276 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFF 276 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHH
Confidence 34678888888888888766666555566666654 456667676666666666654
No 338
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.68 E-value=1.1e+02 Score=32.06 Aligned_cols=67 Identities=16% Similarity=0.097 Sum_probs=55.8
Q ss_pred CchhHHHHHHHHHHHHH-hc-----------------CCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHH
Q 007648 80 THPEYETLNNTFERALV-TM-----------------HKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIW 141 (594)
Q Consensus 80 ~~~~~~~A~~~~~~al~-~~-----------------P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w 141 (594)
..+.|..+..+|.+||+ .+ -.+..+.+..+-.+...|++-.|.+.|.++++....+ +.+|
T Consensus 295 ~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n--PrlW 372 (696)
T KOG2471|consen 295 QLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN--PRLW 372 (696)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC--cHHH
Confidence 46888999999999996 21 2466788888888999999999999999999987765 7999
Q ss_pred HHHHHHH
Q 007648 142 EIYLRFV 148 (594)
Q Consensus 142 ~~~~~~~ 148 (594)
..++..+
T Consensus 373 LRlAEcC 379 (696)
T KOG2471|consen 373 LRLAECC 379 (696)
T ss_pred HHHHHHH
Confidence 9988754
No 339
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=75.68 E-value=8.7 Score=24.23 Aligned_cols=21 Identities=10% Similarity=-0.051 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHH
Q 007648 425 LWVAFAKLYETYKDIANARVI 445 (594)
Q Consensus 425 ~~~~~a~~~~~~~~~~~A~~~ 445 (594)
.|..+|-.....|+++.|+.+
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344444444455555555555
No 340
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=75.54 E-value=49 Score=28.15 Aligned_cols=44 Identities=20% Similarity=0.141 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHH
Q 007648 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFD 126 (594)
Q Consensus 82 ~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ 126 (594)
+........++.++..+|.++.+...++..+.+.+ .......++
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence 44567778888888887888888888888887653 333344444
No 341
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.04 E-value=5.2 Score=26.58 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=23.5
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhh
Q 007648 253 TSLADYYIRRELFEKARDIFEEGMMT 278 (594)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~ 278 (594)
+.+|..|+..|+.+.|+.++++++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57899999999999999999999953
No 342
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.42 E-value=82 Score=34.29 Aligned_cols=134 Identities=14% Similarity=0.047 Sum_probs=81.0
Q ss_pred CChHHHHHHHHHhc-------CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcC-----CHHHHHHHHHHHH
Q 007648 383 HNVEQWHRRVKIFE-------GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYK-----DIANARVIFDKAV 450 (594)
Q Consensus 383 ~~~~~~~~~~~~~~-------~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~-----~~~~A~~~~~kal 450 (594)
.++.+-..++..+. .|++.|...|+.|..........+ .+.+...+|.++.+.. +...|..+|.+|-
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~-~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA 320 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG-LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAA 320 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc-CCccccHHHHHHhcCCCCccccHHHHHHHHHHHH
Confidence 45555555555542 378889999999876100000001 2345566777777532 6788999999998
Q ss_pred hccCCChhhHHHHHHHHHHHHHhc---CChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHH
Q 007648 451 QVNYKTVDHLASIWCEWAEMELRH---KNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEES 527 (594)
Q Consensus 451 ~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (594)
.....+ .-+.+|.+.... .++..|-++|..|.+..-. .....++.++..
T Consensus 321 ~~g~~~------a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~----------------------~A~~~la~~y~~ 372 (552)
T KOG1550|consen 321 ELGNPD------AQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI----------------------LAIYRLALCYEL 372 (552)
T ss_pred hcCCch------HHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh----------------------HHHHHHHHHHHh
Confidence 764433 334556554332 4678999999999876432 222333333321
Q ss_pred ----hCChHHHHHHHHHHHhcc
Q 007648 528 ----LGNLESTRAVYERILDLR 545 (594)
Q Consensus 528 ----~g~~~~A~~~~~~al~~~ 545 (594)
.-+.+.|..+|.++.+..
T Consensus 373 G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 373 GLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCCcCCCHHHHHHHHHHHHHcc
Confidence 126678888888888876
No 343
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=74.06 E-value=16 Score=42.44 Aligned_cols=157 Identities=18% Similarity=0.136 Sum_probs=101.2
Q ss_pred HHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-----CCChhhHHHHHHHHHHHHHhcCCh
Q 007648 403 ILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVN-----YKTVDHLASIWCEWAEMELRHKNF 477 (594)
Q Consensus 403 ~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~-----p~~~~~~~~~~~~~~~~~~~~~~~ 477 (594)
...+.+......|. ....+..++.++.+.|+.+.|+..-.+|.-+. -+.+.. ..-+..++.++...++.
T Consensus 958 lnl~~~v~~~~h~~-----~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t-~~~y~nlal~~f~~~~~ 1031 (1236)
T KOG1839|consen 958 LNLLNNVMGVLHPE-----VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT-KLAYGNLALYEFAVKNL 1031 (1236)
T ss_pred hhHHHHhhhhcchh-----HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH-HHHhhHHHHHHHhccCc
Confidence 33555544433342 56788999999999999999998877765421 122211 14455666666777788
Q ss_pred HHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhcc-----CC---ch
Q 007648 478 KGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR-----IA---TP 549 (594)
Q Consensus 478 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----P~---~~ 549 (594)
..|...+-++..+.-- .+ +...+. -..+..+...++...+.++.|.+..+.|+..+ |. +.
T Consensus 1032 ~~al~~~~ra~~l~~L------s~-ge~hP~-----~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1032 SGALKSLNRALKLKLL------SS-GEDHPP-----TALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred cchhhhHHHHHHhhcc------cc-CCCCCc-----hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Confidence 8888888887765220 00 000000 11334455555667788999999999999843 22 33
Q ss_pred HHHHHHHHHHHHhchhhhhhhcccCccc
Q 007648 550 QIIINYALLLEVWTLLHVFLLHVPFTFS 577 (594)
Q Consensus 550 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~ 577 (594)
.....++++....|++..|++|.++...
T Consensus 1100 ~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 4556778889999999999988887654
No 344
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=73.25 E-value=14 Score=37.32 Aligned_cols=50 Identities=8% Similarity=-0.154 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcC---ChHHHHHHHHHHhcCCc
Q 007648 439 IANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK---NFKGALELMRRATAEPS 492 (594)
Q Consensus 439 ~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p 492 (594)
+.+.++...++....|++- -..+..+.+....+ ..+...+++.+.-..+|
T Consensus 352 lqe~ie~c~~l~~~~P~~k----~~~l~~~~l~~a~e~~~~~~~~l~~~~~le~~d~ 404 (421)
T KOG0529|consen 352 LQEQIESCVELQELLPDSK----WGLLTSALLLRALEPMDSEEEILQLYNDLEALDP 404 (421)
T ss_pred HHHHHHHHHHHHhhCCccc----hhHHHHHHHHhccccccchHHHHHHHHHHhccch
Confidence 4566666677777777775 33333333322222 12455556666666666
No 345
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=72.91 E-value=48 Score=28.20 Aligned_cols=60 Identities=5% Similarity=0.017 Sum_probs=40.2
Q ss_pred CChHHHHHHHHHHhc-CCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHH
Q 007648 475 KNFKGALELMRRATA-EPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIII 553 (594)
Q Consensus 475 ~~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~ 553 (594)
.+..+.+.+++..++ .+|+.- + +-.+++..+ ..++|+++.+++..+..++..|+|+++..
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~r-------------R----e~lyYLAvg--~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERR-------------R----ECLYYLAVG--HYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccc-------------h----hhhhhhHHH--HHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 456778888888886 555310 0 111222222 34788899999999999999999988765
No 346
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=72.49 E-value=34 Score=39.40 Aligned_cols=98 Identities=11% Similarity=0.019 Sum_probs=67.4
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHH-h---cCC---hHHHHHHHHHHhcCCchhHhhhhhccCCh
Q 007648 433 YETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMEL-R---HKN---FKGALELMRRATAEPSVEVRRRVAADGNE 505 (594)
Q Consensus 433 ~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~-~---~~~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 505 (594)
....+.|++|...|+|.-...|.-.+.+ ++.++.|...+ + .|+ +++|..-|++.-.-..
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 550 (932)
T PRK13184 485 FLAEKLYDQALIFYRRIRESFPGRKEGY-EAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVG------------- 550 (932)
T ss_pred HHhhHHHHHHHHHHHHHhhcCCCcccch-HHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCC-------------
Confidence 3456789999999999998888876544 33344443321 1 222 4445555544432211
Q ss_pred hhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHH
Q 007648 506 PVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQII 552 (594)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 552 (594)
-|.-+..-+-+|.++|++++-+++|.-|++..|.+|.+-
T Consensus 551 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 551 --------APLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEIS 589 (932)
T ss_pred --------CchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence 245577888899999999999999999999999998644
No 347
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=72.42 E-value=11 Score=23.84 Aligned_cols=33 Identities=9% Similarity=-0.081 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHhCChHHHHHH--HHHHHhccCCc
Q 007648 516 RLWTFYVDLEESLGNLESTRAV--YERILDLRIAT 548 (594)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~--~~~al~~~P~~ 548 (594)
..|..++-.....|++++|+.. |.-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4567777777788999999999 44666666653
No 348
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=71.01 E-value=1.8e+02 Score=33.98 Aligned_cols=62 Identities=18% Similarity=0.402 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHHHh------cccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 007648 100 KMPRIWIMYLETLTS------QKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYR 163 (594)
Q Consensus 100 ~~~~lw~~y~~~~~~------~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~ 163 (594)
.+|+=+.-+.+-+.+ .-+++.-++-|++||.+.... ....|.....+..+.+.+ .+|..+|.
T Consensus 865 kDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~-~~~~~~e~~n~I~kh~Ly-~~aL~ly~ 932 (1265)
T KOG1920|consen 865 KDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSEC-GETYFPECKNYIKKHGLY-DEALALYK 932 (1265)
T ss_pred cChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHc-CccccHHHHHHHHhcccc-hhhhheec
Confidence 445545555444432 235677788888888765432 134566666676677766 66666653
No 349
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.00 E-value=7.7 Score=25.77 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=13.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 007648 428 AFAKLYETYKDIANARVIFDKAV 450 (594)
Q Consensus 428 ~~a~~~~~~~~~~~A~~~~~kal 450 (594)
.+|..|...|+.+.||.++++.+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 44555556666666666666665
No 350
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=70.26 E-value=45 Score=35.57 Aligned_cols=108 Identities=9% Similarity=-0.117 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHHhccCCChhhHHHHHHHH--HHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhcc
Q 007648 437 KDIANARVIFDKAVQVNYKTVDHLASIWCEW--AEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKS 514 (594)
Q Consensus 437 ~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 514 (594)
|....+...+...+.++|.++ .+.+.. ...+...+....+...++.++..+|+.
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~----~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~-------------------- 100 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNP----ELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPEN-------------------- 100 (620)
T ss_pred CchhHHHHHHHccCccCCCCH----HHHHHHHHHhhccccccchhHHHHHhhhHhcCccc--------------------
Confidence 334446667777777899998 554333 444556677778888899999999962
Q ss_pred HhhHHHHHHHHHHhC-ChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhh
Q 007648 515 LRLWTFYVDLEESLG-NLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFL 569 (594)
Q Consensus 515 ~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~ 569 (594)
......++......| .+..+..+-+.+....|++..+..+...++. .|++..++
T Consensus 101 ~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~l 155 (620)
T COG3914 101 CPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQ-LGRYLKLL 155 (620)
T ss_pred chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHH-HHHHHHHh
Confidence 244444444443344 4455666667799999999999988866666 55554443
No 351
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=69.93 E-value=1.1e+02 Score=30.22 Aligned_cols=109 Identities=14% Similarity=0.052 Sum_probs=65.2
Q ss_pred cCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccH
Q 007648 39 EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFI 118 (594)
Q Consensus 39 ~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~ 118 (594)
+.+...-++.-..||+.+|.+...+...++-+- ..+.+|.++|++||+..-.. +.-.+-...++..
T Consensus 197 ERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa----------~Ti~~AE~l~k~ALka~e~~----yr~sqq~qh~~~~ 262 (556)
T KOG3807|consen 197 ERNPPARIKAAYQALEINNECATAYVLLAEEEA----------TTIVDAERLFKQALKAGETI----YRQSQQCQHQSPQ 262 (556)
T ss_pred hcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhh----------hhHHHHHHHHHHHHHHHHHH----HhhHHHHhhhccc
Confidence 355556666778899999999999888877663 33578999999999854211 1111111112221
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHH--HHHHHHHHHcCCchHHHHHHHHHHHhhCCC
Q 007648 119 TKARRTFDRALCALPVTQHDRIW--EIYLRFVEQEGIPIETSLRVYRRYLKYDPS 171 (594)
Q Consensus 119 ~~A~~~~~ral~~~p~~~~~~~w--~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~ 171 (594)
.+| ..+. ..+ ..++ ..++....++|+. .+|.+.++...+-.|-
T Consensus 263 ~da------~~rR-Dtn--vl~YIKRRLAMCARklGrl-rEA~K~~RDL~ke~pl 307 (556)
T KOG3807|consen 263 HEA------QLRR-DTN--VLVYIKRRLAMCARKLGRL-REAVKIMRDLMKEFPL 307 (556)
T ss_pred hhh------hhhc-ccc--hhhHHHHHHHHHHHHhhhH-HHHHHHHHHHhhhccH
Confidence 111 1111 111 2222 2234444678887 8999999998888884
No 352
>PF12854 PPR_1: PPR repeat
Probab=69.86 E-value=9.5 Score=23.52 Aligned_cols=27 Identities=7% Similarity=0.212 Sum_probs=23.7
Q ss_pred cHhhHHHHHHHHHHhCChHHHHHHHHH
Q 007648 514 SLRLWTFYVDLEESLGNLESTRAVYER 540 (594)
Q Consensus 514 ~~~~~~~~~~~~~~~g~~~~A~~~~~~ 540 (594)
|...|..+++.+-+.|+.++|.+++++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 457788899999999999999999986
No 353
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.79 E-value=1e+02 Score=33.64 Aligned_cols=124 Identities=16% Similarity=0.088 Sum_probs=82.3
Q ss_pred chhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHh-----cCCHHHHHHHHHHHHh-------ccCCChhhHHHHHHH
Q 007648 399 PTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYET-----YKDIANARVIFDKAVQ-------VNYKTVDHLASIWCE 466 (594)
Q Consensus 399 ~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~-----~~~~~~A~~~~~kal~-------~~p~~~~~~~~~~~~ 466 (594)
...+...|+.+.+.- .+..-..+|.++.. ..|.+.|...|+.+.+ .. .+ ...+.
T Consensus 228 ~~~a~~~~~~~a~~g--------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~----~a~~~ 293 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG--------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LP----PAQYG 293 (552)
T ss_pred hhHHHHHHHHHHhhc--------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CC----ccccH
Confidence 356788888877642 34566666766653 3589999999999976 22 22 34456
Q ss_pred HHHHHHhcC-----ChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHh---CChHHHHHHH
Q 007648 467 WAEMELRHK-----NFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESL---GNLESTRAVY 538 (594)
Q Consensus 467 ~~~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~A~~~~ 538 (594)
+|.++.+.. +.+.|..+|.++-+.... .....++.++..- .+...|.++|
T Consensus 294 lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~----------------------~a~~~lg~~~~~g~~~~d~~~A~~yy 351 (552)
T KOG1550|consen 294 LGRLYLQGLGVEKIDYEKALKLYTKAAELGNP----------------------DAQYLLGVLYETGTKERDYRRAFEYY 351 (552)
T ss_pred HHHHHhcCCCCccccHHHHHHHHHHHHhcCCc----------------------hHHHHHHHHHHcCCccccHHHHHHHH
Confidence 677766643 667799999999887542 2222333333221 3467888999
Q ss_pred HHHHhccCCchHHHHHHHHHHH
Q 007648 539 ERILDLRIATPQIIINYALLLE 560 (594)
Q Consensus 539 ~~al~~~P~~~~~~~~~~~~~~ 560 (594)
.+|.+. .++.+..+++.++.
T Consensus 352 ~~Aa~~--G~~~A~~~la~~y~ 371 (552)
T KOG1550|consen 352 SLAAKA--GHILAIYRLALCYE 371 (552)
T ss_pred HHHHHc--CChHHHHHHHHHHH
Confidence 888875 57778888888875
No 354
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=68.83 E-value=13 Score=24.30 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=23.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhcccHHH
Q 007648 90 TFERALVTMHKMPRIWIMYLETLTSQKFITK 120 (594)
Q Consensus 90 ~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~ 120 (594)
.|.+|+..+|++...+..|+.++..+|+...
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~r 34 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPAR 34 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHH
Confidence 4667777778877888888888877777643
No 355
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=68.17 E-value=19 Score=34.76 Aligned_cols=61 Identities=11% Similarity=-0.036 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007648 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRA 487 (594)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 487 (594)
..+....+..+...|.+.+|.+..+++++.+|-+- ..|..+...+...|+--+|.+.|++-
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e----~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSE----QDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhh----HHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34445556777789999999999999999999887 88888888888888866666666654
No 356
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.14 E-value=1.7e+02 Score=31.09 Aligned_cols=68 Identities=16% Similarity=0.069 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh---ccCCChhhHHHHHHHHHHHHHhcCC-hHHHHHHHHHHhcCCch
Q 007648 426 WVAFAKLYETYKDIANARVIFDKAVQ---VNYKTVDHLASIWCEWAEMELRHKN-FKGALELMRRATAEPSV 493 (594)
Q Consensus 426 ~~~~a~~~~~~~~~~~A~~~~~kal~---~~p~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~ 493 (594)
++-+|.+....|+...|...|..+++ ..-.++-......+.+|.+....+. +++++.++.+|-.-..+
T Consensus 452 ~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 452 YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 55678889999999999999999984 3334444444788899988877666 99999999999877653
No 357
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=67.62 E-value=14 Score=31.23 Aligned_cols=56 Identities=9% Similarity=0.100 Sum_probs=36.2
Q ss_pred CchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh
Q 007648 398 NPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTV 457 (594)
Q Consensus 398 ~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~ 457 (594)
+..+-+.+++..++.-+|.. -.+..+.+|.-+.+.|+|++++.+++..|+..|+|.
T Consensus 50 dv~~GI~iLe~l~~~~~~~~----rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPER----RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred HHHHhHHHHHHHhhhcCccc----chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 45566677777665334422 123334555566678888888888888888888876
No 358
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=67.11 E-value=9.4 Score=22.33 Aligned_cols=28 Identities=11% Similarity=0.249 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhc
Q 007648 517 LWTFYVDLEESLGNLESTRAVYERILDL 544 (594)
Q Consensus 517 ~~~~~~~~~~~~g~~~~A~~~~~~al~~ 544 (594)
.|..+++.+.+.|++++|.++|++..+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3677888899999999999999987664
No 359
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=66.66 E-value=1.6e+02 Score=31.73 Aligned_cols=121 Identities=12% Similarity=-0.067 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHH---hcCCchhHhhhhhccCChhhhHHhhcc
Q 007648 438 DIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRA---TAEPSVEVRRRVAADGNEPVQMKLHKS 514 (594)
Q Consensus 438 ~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a---l~~~p~~~~~~~~~~~~~~~~~~~~~~ 514 (594)
+.+.-..+|+.+++.+|... .....++.+ .+....+.++++-. +...| +
T Consensus 359 ~~~~l~~~~e~~~~~~P~~~----~~le~l~~~---~~~~~~~~~Lle~i~~~l~~~~---------------------s 410 (547)
T PF14929_consen 359 NSSVLSSCLEDCLKKDPTMS----YSLERLILL---HQKDYSAEQLLEMIALHLDLVP---------------------S 410 (547)
T ss_pred cHHHHHHHHHHHhcCCCcHH----HHHHHHHhh---hhhHHHHHHHHHHHHHHhhcCC---------------------C
Confidence 56667778888888888775 222222222 11233444444411 12223 5
Q ss_pred HhhHHHHHHHHHH-hCChHHHHHHHHHHHh---------ccCCchHHHHHHHHHHHHhchhhhhhhcccCcccchhhhhh
Q 007648 515 LRLWTFYVDLEES-LGNLESTRAVYERILD---------LRIATPQIIINYALLLEVWTLLHVFLLHVPFTFSGLCMFTF 584 (594)
Q Consensus 515 ~~~~~~~~~~~~~-~g~~~~A~~~~~~al~---------~~P~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 584 (594)
..+|..|.....+ .++++.-.+-..++++ ..-.+..+|..++..+.+..+.+-..+.-..=..||-.+||
T Consensus 411 ~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~~i~~~~~~~~~W~~R~~WWp~~HF 490 (547)
T PF14929_consen 411 HPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLPKIFDLDWVREEWRSRKDWWPTFHF 490 (547)
T ss_pred chHHHHHHHHHHhccccccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhhHhhhhhchHHHHHHHhhhhhhhcc
Confidence 6889999888877 6777655666666653 12356789988888877665544334556667788887776
Q ss_pred hh
Q 007648 585 FF 586 (594)
Q Consensus 585 ~~ 586 (594)
-.
T Consensus 491 s~ 492 (547)
T PF14929_consen 491 SR 492 (547)
T ss_pred ch
Confidence 43
No 360
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=66.26 E-value=11 Score=24.03 Aligned_cols=28 Identities=11% Similarity=0.258 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007648 425 LWVAFAKLYETYKDIANARVIFDKAVQV 452 (594)
Q Consensus 425 ~~~~~a~~~~~~~~~~~A~~~~~kal~~ 452 (594)
++..+|.+-...++++.|..-|++||++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4555666666666666666666666653
No 361
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=65.93 E-value=37 Score=35.60 Aligned_cols=89 Identities=12% Similarity=-0.036 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc---ccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHH
Q 007648 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQ---KFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETS 158 (594)
Q Consensus 82 ~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~---~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a 158 (594)
.....++..|.+++...|+...++..++..+++. |+.-.|..-...|++++|.. .+.|..+..+...++.+ .+|
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~--~kah~~la~aL~el~r~-~ea 464 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI--QKAHFRLARALNELTRY-LEA 464 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH--HHHHHHHHHHHHHHhhH-HHh
Confidence 5567889999999999999999999999999885 57777888888899988864 67787778888888888 888
Q ss_pred HHHHHHHHhhCCCCH
Q 007648 159 LRVYRRYLKYDPSHI 173 (594)
Q Consensus 159 ~~~~~~~l~~~p~~~ 173 (594)
++.-..+....|++.
T Consensus 465 l~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 465 LSCHWALQMSFPTDV 479 (758)
T ss_pred hhhHHHHhhcCchhh
Confidence 887776666777655
No 362
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.27 E-value=15 Score=33.58 Aligned_cols=50 Identities=20% Similarity=0.186 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCC
Q 007648 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA 547 (594)
Q Consensus 477 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 547 (594)
.+..++..++.++..| ++.++..++.++...|+.++|+.+.+++....|.
T Consensus 127 l~~~~~~a~~~l~~~P---------------------~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP---------------------DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCC---------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4455677788888888 5788999999999999999999999999999993
No 363
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=65.03 E-value=14 Score=23.64 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Q 007648 250 RLWTSLADYYIRRELFEKARDIFEEGMMTV 279 (594)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (594)
+++..+|++-...+++++|..-|+++|...
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999753
No 364
>PF12854 PPR_1: PPR repeat
Probab=64.76 E-value=18 Score=22.30 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 007648 424 TLWVAFAKLYETYKDIANARVIFDK 448 (594)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~k 448 (594)
..|..+...+.+.|+.++|+++|++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3444555555556666666665553
No 365
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=64.72 E-value=26 Score=36.72 Aligned_cols=90 Identities=11% Similarity=0.017 Sum_probs=75.1
Q ss_pred CChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHH
Q 007648 40 APFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFIT 119 (594)
Q Consensus 40 ~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~ 119 (594)
+....++..|.++++..|....+...++...++. .=.|+.-.|.+-.-.|++++|...+.|+.++.++...+.+.
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkR-----kW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ 462 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKR-----KWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYL 462 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhh-----hccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHH
Confidence 3456788999999999999999998888876543 12357778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCC
Q 007648 120 KARRTFDRALCALPV 134 (594)
Q Consensus 120 ~A~~~~~ral~~~p~ 134 (594)
+|.....-+....|.
T Consensus 463 eal~~~~alq~~~Pt 477 (758)
T KOG1310|consen 463 EALSCHWALQMSFPT 477 (758)
T ss_pred HhhhhHHHHhhcCch
Confidence 998887766666674
No 366
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=64.58 E-value=20 Score=34.43 Aligned_cols=59 Identities=8% Similarity=-0.083 Sum_probs=50.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchh
Q 007648 432 LYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVE 494 (594)
Q Consensus 432 ~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 494 (594)
.+.+.++.+.|..+-++.+..+|++| .=+.--|.++.+.|.+..|++-++..+..+|++
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp----~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDP----YEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCCh----hhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 34467889999999999999999999 555556666778999999999999999999974
No 367
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=64.54 E-value=1.1e+02 Score=27.60 Aligned_cols=156 Identities=11% Similarity=0.024 Sum_probs=90.8
Q ss_pred CChHHHHHHHHHhc---CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhccC
Q 007648 383 HNVEQWHRRVKIFE---GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYET-----YKDIANARVIFDKAVQVNY 454 (594)
Q Consensus 383 ~~~~~~~~~~~~~~---~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~-----~~~~~~A~~~~~kal~~~p 454 (594)
..+++...++..++ +++++|..+|+.-... ..++.--+.||..+.. .+++..|...|+.|...
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCde-------n~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~-- 102 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDE-------NSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA-- 102 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------cCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--
Confidence 45566677777665 5788888888775432 1256666788877762 35789999999999863
Q ss_pred CChhhHHHHHHHHHHHHHh-----cC--ChHHHHHHHHHHhcCCchh-Hh----hhhh----ccCChhhhHHhhccHhhH
Q 007648 455 KTVDHLASIWCEWAEMELR-----HK--NFKGALELMRRATAEPSVE-VR----RRVA----ADGNEPVQMKLHKSLRLW 518 (594)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~-----~~--~~~~A~~~~~~al~~~p~~-~~----~~~~----~~~~~~~~~~~~~~~~~~ 518 (594)
+++ ......+.+... .+ +.++|+..+.|+..+.-.. +. -+++ +..+-+..- -|
T Consensus 103 n~~----~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g~~k~~t~ap~~g----~p--- 171 (248)
T KOG4014|consen 103 NIP----QACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDGEACFLLSTMYMGGKEKFKTNAPGEG----KP--- 171 (248)
T ss_pred CCH----HHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCchHHHHHHHHHhccchhhcccCCCCC----CC---
Confidence 344 444444443322 23 3789999999999886542 21 1221 111111000 00
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 007648 519 TFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLE 560 (594)
Q Consensus 519 ~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~ 560 (594)
........-..+.+.|.+.--||-++ ++|.+-.|.++.+.
T Consensus 172 ~~~~~~~~~~kDMdka~qfa~kACel--~~~~aCAN~SrMyk 211 (248)
T KOG4014|consen 172 LDRAELGSLSKDMDKALQFAIKACEL--DIPQACANVSRMYK 211 (248)
T ss_pred cchhhhhhhhHhHHHHHHHHHHHHhc--CChHHHhhHHHHHH
Confidence 01112222335677777776666665 56777777777774
No 368
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=64.15 E-value=37 Score=37.14 Aligned_cols=130 Identities=18% Similarity=0.232 Sum_probs=68.4
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhccCCChhhHHHHHHHH
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYET---------YKDIANARVIFDKAVQVNYKTVDHLASIWCEW 467 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~---------~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~ 467 (594)
|+.++|+...-.+++...+ ..++.++..|.+|.. .+..+.|+..|++|++..|.- ...+.+
T Consensus 257 GDRakAL~~~l~lve~eg~-----vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~-----~sGIN~ 326 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGP-----VAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE-----YSGINL 326 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCC-----CCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh-----hccccH
Confidence 5667777777776664322 145566666666543 256778888888888887765 234455
Q ss_pred HHHHHhcC-ChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHH--HHHHHHHHhCChHHHHHHHHHHHhc
Q 007648 468 AEMELRHK-NFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWT--FYVDLEESLGNLESTRAVYERILDL 544 (594)
Q Consensus 468 ~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~A~~~~~~al~~ 544 (594)
+.++.-.| +++...++=.=+++++. ..|.+.+..++- .+|- .|..+-.--+++.+|.+.-+...++
T Consensus 327 atLL~aaG~~Fens~Elq~IgmkLn~--------LlgrKG~leklq---~YWdV~~y~~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 327 ATLLRAAGEHFENSLELQQIGMKLNS--------LLGRKGALEKLQ---EYWDVATYFEASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred HHHHHHhhhhccchHHHHHHHHHHHH--------HhhccchHHHHH---HHHhHHHhhhhhhhccCHHHHHHHHHHHhcc
Confidence 55544333 45554444444444432 111111111111 2231 1111122246777888888887777
Q ss_pred cCC
Q 007648 545 RIA 547 (594)
Q Consensus 545 ~P~ 547 (594)
+|-
T Consensus 396 k~P 398 (1226)
T KOG4279|consen 396 KPP 398 (1226)
T ss_pred CCc
Confidence 764
No 369
>PF13041 PPR_2: PPR repeat family
Probab=63.25 E-value=23 Score=23.84 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Q 007648 250 RLWTSLADYYIRRELFEKARDIFEEGMMTV 279 (594)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (594)
-.|..+...+.+.|++++|.++|++..+..
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 468888899999999999999999999763
No 370
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=63.03 E-value=34 Score=30.68 Aligned_cols=64 Identities=9% Similarity=0.184 Sum_probs=37.6
Q ss_pred ChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-ccCCCCCchhHHHHHHHHHHHHHhcCCChHHHH
Q 007648 41 PFKKRFVIYERALKALPGSYKLWHAYLIERLSI-VKNLPITHPEYETLNNTFERALVTMHKMPRIWI 106 (594)
Q Consensus 41 ~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~ 106 (594)
..+.|..+++..-+..|....+. .-+...++. .-.+|+..|.+++|.+++++... +|++...-.
T Consensus 84 PLESAl~v~~~I~~E~~~~~~lh-e~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~ 148 (200)
T cd00280 84 PLESALMVLESIEKEFSLPETLH-EEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRM 148 (200)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHH-HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHH
Confidence 45688888888877777432222 222222221 11245666777777777777776 777766633
No 371
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=62.64 E-value=21 Score=23.29 Aligned_cols=33 Identities=9% Similarity=-0.072 Sum_probs=25.8
Q ss_pred chHhHHHHhhCCCCHHHHHHHHHHHH-cCChhHH
Q 007648 13 DLLYEEELLRNPFSLKLWWRYLVAKR-EAPFKKR 45 (594)
Q Consensus 13 ~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a 45 (594)
...|+++|..+|.+-..|+.|+.+.. .|+..++
T Consensus 2 ~~all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 2 EEALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred cHHHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 45688888889988888988888775 6777544
No 372
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=61.42 E-value=11 Score=28.46 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=15.1
Q ss_pred HhCChHHHHHHHHHHHhc
Q 007648 527 SLGNLESTRAVYERILDL 544 (594)
Q Consensus 527 ~~g~~~~A~~~~~~al~~ 544 (594)
..|++++|..+|..|++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 458899999999999884
No 373
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=60.89 E-value=22 Score=26.71 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHhccCCchH
Q 007648 531 LESTRAVYERILDLRIATPQ 550 (594)
Q Consensus 531 ~~~A~~~~~~al~~~P~~~~ 550 (594)
+.+|...+-+++...|+++.
T Consensus 29 Y~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 29 YKKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHHHhCCChHH
Confidence 34444555555556788875
No 374
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=60.39 E-value=2.1e+02 Score=36.25 Aligned_cols=104 Identities=13% Similarity=0.071 Sum_probs=77.9
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---cCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhh
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQV---NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRR 498 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 498 (594)
..+.|.+-...-....+..+-+-.++|++-. .|+--....+.|+..|++....|+++.|...+-.|.+..+.
T Consensus 1628 ~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~----- 1702 (2382)
T KOG0890|consen 1628 NSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLP----- 1702 (2382)
T ss_pred cchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccc-----
Confidence 4566765544333344466666677776542 44444455689999999999999999999999998877653
Q ss_pred hhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhc-cCC
Q 007648 499 VAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL-RIA 547 (594)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~P~ 547 (594)
.+.+..+..+...|+-..|..+++..+.+ .|+
T Consensus 1703 -----------------~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1703 -----------------EIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred -----------------hHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 67788888888999999999999999964 354
No 375
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=60.29 E-value=1.4e+02 Score=29.48 Aligned_cols=71 Identities=14% Similarity=0.078 Sum_probs=44.2
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc---CCChh---hHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCc
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVN---YKTVD---HLASIWCEWAEMELRHKNFKGALELMRRATAEPS 492 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~---p~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 492 (594)
..++|++.|.++.+.||.+.|.+.+.+..+.. .-..+ .+-.+.+.|++...=...++.|..+++++-..+.
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeR 179 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWER 179 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhh
Confidence 46889999999999999998888777766532 11111 1112223333333334567888888888766654
No 376
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=60.02 E-value=1.1e+02 Score=29.74 Aligned_cols=73 Identities=14% Similarity=0.074 Sum_probs=45.4
Q ss_pred cCCCChHHHHHHHHH----hcCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007648 380 QNPHNVEQWHRRVKI----FEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQV 452 (594)
Q Consensus 380 ~~p~~~~~~~~~~~~----~~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~ 452 (594)
-||.....|...-+- +.+.-++-++-+.++|+....++..-.-.++|.+.|.+|.+.+|.+.+.+.+.+.++.
T Consensus 68 ~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~ 144 (412)
T COG5187 68 GNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRD 144 (412)
T ss_pred cCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 377776667543221 1123344455666666543222211124789999999999999999998887777653
No 377
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=59.15 E-value=3.1e+02 Score=31.12 Aligned_cols=163 Identities=12% Similarity=-0.058 Sum_probs=88.7
Q ss_pred HHHhcCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 007648 392 VKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEME 471 (594)
Q Consensus 392 ~~~~~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~ 471 (594)
+.++.++++.|...-+.++..+|+.... .-.-+....+....-.|++++|+.+...+.+..-..-..+..+|..+...+
T Consensus 467 val~~~~~e~a~~lar~al~~L~~~~~~-~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~ 545 (894)
T COG2909 467 VALNRGDPEEAEDLARLALVQLPEAAYR-SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSE 545 (894)
T ss_pred HHHhcCCHHHHHHHHHHHHHhcccccch-hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3345578888888888988876664321 112344556777778999999999999999863222212226777765543
Q ss_pred --HhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHH----HhCChHHHHHHHHHHHhcc
Q 007648 472 --LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEE----SLGNLESTRAVYERILDLR 545 (594)
Q Consensus 472 --~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~A~~~~~~al~~~ 545 (594)
..+| +.++..-+.+-..--. ..++ .+. .+.-.....+++.. --+...+++..++-.....
T Consensus 546 il~~qG--q~~~a~~~~~~~~~~~---q~l~-q~~--------~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~ 611 (894)
T COG2909 546 ILEAQG--QVARAEQEKAFNLIRE---QHLE-QKP--------RHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT 611 (894)
T ss_pred HHHHhh--HHHHHHHHHHHHHHHH---HHhh-hcc--------cchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc
Confidence 4456 3333332222211100 0000 000 00001111111111 1244556666666655555
Q ss_pred CCchHHH---HHHHHHHHHhchhhhhh
Q 007648 546 IATPQII---INYALLLEVWTLLHVFL 569 (594)
Q Consensus 546 P~~~~~~---~~~~~~~~~~g~~~~a~ 569 (594)
|..-..+ +.++.++...|++++|.
T Consensus 612 ~~~~~~~~~~~~LA~l~~~~Gdl~~A~ 638 (894)
T COG2909 612 PQPLLSRLALSMLAELEFLRGDLDKAL 638 (894)
T ss_pred cchhHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5544433 47899999999999996
No 378
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=59.07 E-value=59 Score=32.43 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCch-HHHHHH
Q 007648 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP-QIIINY 555 (594)
Q Consensus 477 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~-~~~~~~ 555 (594)
.++...++...++.-|+. . .-..+|+-++.++.+.|.++.++.+|+.|+.....-. ++..-+
T Consensus 119 ~eei~~~L~~li~~IP~A--------------~---K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l 181 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDA--------------K---KLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVL 181 (353)
T ss_pred HHHHHHHHHHHHhcCchH--------------H---HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 457778888888888851 1 1348999999999999999999999999999765432 344455
Q ss_pred HHHHH
Q 007648 556 ALLLE 560 (594)
Q Consensus 556 ~~~~~ 560 (594)
..++.
T Consensus 182 ~diL~ 186 (353)
T PF15297_consen 182 VDILK 186 (353)
T ss_pred HHHHH
Confidence 56654
No 379
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=58.20 E-value=24 Score=20.96 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhc
Q 007648 518 WTFYVDLEESLGNLESTRAVYERILDL 544 (594)
Q Consensus 518 ~~~~~~~~~~~g~~~~A~~~~~~al~~ 544 (594)
|...+..+.+.|++++|.++|.+..+.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 666777888999999999999998763
No 380
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.57 E-value=44 Score=35.74 Aligned_cols=55 Identities=20% Similarity=0.105 Sum_probs=37.4
Q ss_pred cHhhHHHHHHHHHHhCChHHHHHHHHHHHhcc--------CCchHHHHHHHHHHHHhchhhhh
Q 007648 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLR--------IATPQIIINYALLLEVWTLLHVF 568 (594)
Q Consensus 514 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------P~~~~~~~~~~~~~~~~g~~~~a 568 (594)
++.=|-.++++-.+.|++..|.+++.+|..+. ..+......++..-.+.|..+-|
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~A 727 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLA 727 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchH
Confidence 45668999999999999999999999987742 24444455555554444444333
No 381
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=57.55 E-value=68 Score=30.85 Aligned_cols=68 Identities=15% Similarity=-0.016 Sum_probs=54.0
Q ss_pred HHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchH
Q 007648 471 ELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550 (594)
Q Consensus 471 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~ 550 (594)
+.+.++.+.|....++.+.++|++ +.-|---|-+|.++|-+.-|++-++..++.-|++|.
T Consensus 191 ~~~e~~~~~al~~~~r~l~l~P~d--------------------p~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 191 LLRELQWELALRVAERLLDLNPED--------------------PYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHhhchHHHHHHHHHHHhhCCCC--------------------hhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 356788999999999999999963 334445567777889999999999999999999997
Q ss_pred HHHHHHHH
Q 007648 551 IIINYALL 558 (594)
Q Consensus 551 ~~~~~~~~ 558 (594)
+-.--.+.
T Consensus 251 a~~ir~~l 258 (269)
T COG2912 251 AEMIRAQL 258 (269)
T ss_pred HHHHHHHH
Confidence 65543333
No 382
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=57.31 E-value=1.4e+02 Score=34.59 Aligned_cols=128 Identities=15% Similarity=0.157 Sum_probs=85.3
Q ss_pred HhHHHHh-hCCCCH-HHHHHHHHHHH----c-CC-hhHHHHHHHHHHHhC------CCChHHHHHHHHHHHHhccCCCCC
Q 007648 15 LYEEELL-RNPFSL-KLWWRYLVAKR----E-AP-FKKRFVIYERALKAL------PGSYKLWHAYLIERLSIVKNLPIT 80 (594)
Q Consensus 15 ~~e~~l~-~~P~~~-~~w~~~~~~~~----~-~~-~~~a~~~~e~al~~~------P~s~~lW~~~~~~~~~~~~~~~~~ 80 (594)
.++..+. ..++|. ..|.+|+.+.. . +. ....+...++++... +.++.+-..|+-++ .
T Consensus 20 ~li~el~~~~~~DPl~~w~ryi~wv~~~~~~~~~~~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~~~---------~ 90 (974)
T KOG1166|consen 20 RLIYELESYAGNDPLDKWLRYIEWVLEVYPEGKENQSLLRNLLERCLEELEDLKRYRNDPRFLILWCSLE---------L 90 (974)
T ss_pred HHHHHHHhhcCCCchhhhHhHhhhhhhccccCCchhhhHHHHHHHHHHhccchhhccccHHHHHHHHhHH---------H
Confidence 3344443 234444 78999999875 2 33 466777777776654 44555322232211 1
Q ss_pred chhHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcC
Q 007648 81 HPEYETLNNTFERALVT--MHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEG 152 (594)
Q Consensus 81 ~~~~~~A~~~~~~al~~--~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~ 152 (594)
...+.++..+|..+.+. .+.....+..|+..+.+.+.+..|..+|+.+++..-.. ...+-..+..|..+++
T Consensus 91 ~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP-~~rL~~~~~~F~~r~~ 163 (974)
T KOG1166|consen 91 REELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEP-LERLLRQYSNFQQRLM 163 (974)
T ss_pred HHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHh
Confidence 24468889999988875 47778899999999999999999999999999875433 2455566666665443
No 383
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.48 E-value=46 Score=30.36 Aligned_cols=53 Identities=23% Similarity=0.161 Sum_probs=39.1
Q ss_pred chhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 007648 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPV 134 (594)
Q Consensus 81 ~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~ 134 (594)
.+..+...+..++.++..|+ +.++..++..+..+|+.++|+....++....|.
T Consensus 124 ~~~l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 124 PEMLEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34456666677777777775 677777888888888888888888888887774
No 384
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.76 E-value=1.7e+02 Score=26.30 Aligned_cols=149 Identities=12% Similarity=0.087 Sum_probs=90.4
Q ss_pred hHHHHHHHHHh-cCCchhHHHHHHHHHhccCCCcccCCc-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHH
Q 007648 385 VEQWHRRVKIF-EGNPTKQILTYTEAVRTVDPMKAVGKP-HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLAS 462 (594)
Q Consensus 385 ~~~~~~~~~~~-~~~~~~a~~~y~~Ai~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~ 462 (594)
.+.+..-..+- .+..++|...|...-+. . .+.+ +-+.+..+.+..+.|+...|...|..+-...| .|....+
T Consensus 59 gd~flaAL~lA~~~k~d~Alaaf~~lekt-g----~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd 132 (221)
T COG4649 59 GDAFLAALKLAQENKTDDALAAFTDLEKT-G----YGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRD 132 (221)
T ss_pred hHHHHHHHHHHHcCCchHHHHHHHHHHhc-C----CCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhH
Confidence 34444333333 36788899999775442 1 2223 44566777788889999999999999876543 2322222
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHHHhc-CCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHH
Q 007648 463 -IWCEWAEMELRHKNFKGALELMRRATA-EPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540 (594)
Q Consensus 463 -~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 540 (594)
.-+.-+.++.-+|.|+..-...+-.-. .+| . + ...-..++-.-.+-|++..|+++|..
T Consensus 133 ~ARlraa~lLvD~gsy~dV~srvepLa~d~n~--m-------------R-----~sArEALglAa~kagd~a~A~~~F~q 192 (221)
T COG4649 133 LARLRAAYLLVDNGSYDDVSSRVEPLAGDGNP--M-------------R-----HSAREALGLAAYKAGDFAKAKSWFVQ 192 (221)
T ss_pred HHHHHHHHHHhccccHHHHHHHhhhccCCCCh--h-------------H-----HHHHHHHhHHHHhccchHHHHHHHHH
Confidence 334444455678888876555443221 122 1 0 01112223333488999999999999
Q ss_pred HHhccCCchHHHHHHHHHHH
Q 007648 541 ILDLRIATPQIIINYALLLE 560 (594)
Q Consensus 541 al~~~P~~~~~~~~~~~~~~ 560 (594)
... +...|....+.+++..
T Consensus 193 ia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 193 IAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred HHc-cccCcHHHHHHHHHHH
Confidence 776 6677777777776654
No 385
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=52.06 E-value=1.9e+02 Score=29.69 Aligned_cols=52 Identities=10% Similarity=-0.050 Sum_probs=37.6
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHH--HHHhcCCHHHHHHHHHHHHhc
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAK--LYETYKDIANARVIFDKAVQV 452 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~--~~~~~~~~~~A~~~~~kal~~ 452 (594)
+++..|...++..+..+++... ...+..++. .++..-++++|.+.+++.+..
T Consensus 145 ~~y~aA~~~l~~l~~rl~~~~~----~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 145 YDYGAAARILEELLRRLPGREE----YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred CCHHHHHHHHHHHHHhCCchhh----HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7899999999998886555321 233444433 455788999999999998864
No 386
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=51.24 E-value=3.6e+02 Score=29.47 Aligned_cols=27 Identities=15% Similarity=0.073 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH
Q 007648 104 IWIMYLETLTSQKFITKARRTFDRALC 130 (594)
Q Consensus 104 lw~~y~~~~~~~~~~~~A~~~~~ral~ 130 (594)
=|..+++-....=+++-||+.|.|.-.
T Consensus 587 DW~~LA~~ALeAL~f~~ARkAY~rVRd 613 (1081)
T KOG1538|consen 587 DWRELAMEALEALDFETARKAYIRVRD 613 (1081)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHhc
Confidence 466666666665677888888877543
No 387
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=50.49 E-value=1.3e+02 Score=28.77 Aligned_cols=83 Identities=14% Similarity=0.071 Sum_probs=49.9
Q ss_pred HHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC--hhhHHHHHHHHHHHHHhcCChHH
Q 007648 402 QILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKT--VDHLASIWCEWAEMELRHKNFKG 479 (594)
Q Consensus 402 a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~ 479 (594)
.++++++|+..............+-..+|..+...|++++|.+.|+++...-... ...+..+...+..+..+.|+.+.
T Consensus 157 iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~ 236 (247)
T PF11817_consen 157 IIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVED 236 (247)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHH
Confidence 4556666655432211112245667788999999999999999999997543221 22233444455555556677666
Q ss_pred HHHHH
Q 007648 480 ALELM 484 (594)
Q Consensus 480 A~~~~ 484 (594)
...+-
T Consensus 237 ~l~~~ 241 (247)
T PF11817_consen 237 YLTTS 241 (247)
T ss_pred HHHHH
Confidence 55443
No 388
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=49.88 E-value=1.8e+02 Score=25.60 Aligned_cols=55 Identities=16% Similarity=0.041 Sum_probs=45.0
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTV 457 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~ 457 (594)
++.+++..++. |+..+.|. ...+-+--|.++...|++.+|+.+|+......|..|
T Consensus 24 ~~~~D~e~lL~-ALrvLRP~-----~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p 78 (160)
T PF09613_consen 24 GDPDDAEALLD-ALRVLRPE-----FPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP 78 (160)
T ss_pred CChHHHHHHHH-HHHHhCCC-----chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh
Confidence 67888777774 56656664 678888888889999999999999999888888887
No 389
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=49.52 E-value=87 Score=30.32 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=13.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 007648 428 AFAKLYETYKDIANARVIFDKAVQV 452 (594)
Q Consensus 428 ~~a~~~~~~~~~~~A~~~~~kal~~ 452 (594)
.+|+-..+.+++++|+..|.+.+..
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~k 32 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGK 32 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcC
Confidence 3344444555555555555555543
No 390
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=47.77 E-value=64 Score=27.14 Aligned_cols=43 Identities=23% Similarity=0.251 Sum_probs=30.1
Q ss_pred HHHHHHHHHHH--------cCChhHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 007648 28 KLWWRYLVAKR--------EAPFKKRFVIYERALKALPGSYKLWHAYLIER 70 (594)
Q Consensus 28 ~~w~~~~~~~~--------~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~ 70 (594)
..|-+|.+..+ +.+.+.|.++|+..++.+|+...+...++.-.
T Consensus 70 tk~DeY~EaLRDfq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 70 TKWDEYSEALRDFQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp --HHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHcc
Confidence 44555555432 57779999999999999999999998888664
No 391
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=47.45 E-value=94 Score=32.34 Aligned_cols=27 Identities=19% Similarity=0.221 Sum_probs=14.9
Q ss_pred HhCChHHHHHHHHHHHhccCCchHHHH
Q 007648 527 SLGNLESTRAVYERILDLRIATPQIII 553 (594)
Q Consensus 527 ~~g~~~~A~~~~~~al~~~P~~~~~~~ 553 (594)
.+|-+|++.-.+.+.+.++|..-.-|.
T Consensus 403 ~l~~~d~~~~~wk~~~~~~~~~~~g~v 429 (831)
T PRK15180 403 ALQLFDKSYHYWKRVLLLNPETQSGWV 429 (831)
T ss_pred HHhHHHHHHHHHHHHhccCChhcccce
Confidence 345556666666666666655444443
No 392
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=47.19 E-value=55 Score=31.67 Aligned_cols=62 Identities=23% Similarity=0.144 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 007648 480 ALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLL 559 (594)
Q Consensus 480 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~ 559 (594)
|+..|.+|+.+.|+ +...|.++|-+....|+.=.|.=.|-|++...-..+.+..|+..++
T Consensus 1 A~~~Y~~A~~l~P~--------------------~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf 60 (278)
T PF10373_consen 1 AERYYRKAIRLLPS--------------------NGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLF 60 (278)
T ss_dssp HHHHHHHHHHH-TT--------------------BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCC--------------------CCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 67899999999995 3477889999998899999999999999986655588999999999
Q ss_pred HH
Q 007648 560 EV 561 (594)
Q Consensus 560 ~~ 561 (594)
.+
T Consensus 61 ~~ 62 (278)
T PF10373_consen 61 EK 62 (278)
T ss_dssp HH
T ss_pred HH
Confidence 88
No 393
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=46.37 E-value=23 Score=34.35 Aligned_cols=36 Identities=11% Similarity=-0.040 Sum_probs=31.5
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhh
Q 007648 534 TRAVYERILDLRIATPQIIINYALLLEVWTLLHVFL 569 (594)
Q Consensus 534 A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~ 569 (594)
|+.+|.+|+.+.|+++..+.++|-+....|+.=+|+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~av 36 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAV 36 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHH
Confidence 688999999999999999999999999988887776
No 394
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=46.03 E-value=1.8e+02 Score=24.52 Aligned_cols=46 Identities=9% Similarity=0.116 Sum_probs=26.0
Q ss_pred hcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHH
Q 007648 435 TYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMR 485 (594)
Q Consensus 435 ~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 485 (594)
..+........++.++..++.++ .+.-.++.++.+. +..+....++
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~----~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENP----ALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccch----hHHHHHHHHHHHH-CHHHHHHHHH
Confidence 45667777777777777766666 4444444444332 2334444444
No 395
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=46.03 E-value=56 Score=35.89 Aligned_cols=146 Identities=14% Similarity=0.127 Sum_probs=85.2
Q ss_pred hHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHH---hcCCHHHHHHHHHHHHhc-cCCChh
Q 007648 385 VEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYE---TYKDIANARVIFDKAVQV-NYKTVD 458 (594)
Q Consensus 385 ~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~A~~~~~kal~~-~p~~~~ 458 (594)
++.-..+..-+. .+++..+.+-+. ++.+|....+.....+-+.|+...- +-||-++|..+.-.+++. .|-.|
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~-Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap- 278 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVED-LKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP- 278 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHH-HHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC-
Confidence 344444333333 467766666655 4445532211111222233333333 358999999999999985 56677
Q ss_pred hHHHHHHHHHHHHHh---------cCChHHHHHHHHHHhcCCchh---H-hh---hh-h--ccCChhhhHHhhccHhhHH
Q 007648 459 HLASIWCEWAEMELR---------HKNFKGALELMRRATAEPSVE---V-RR---RV-A--ADGNEPVQMKLHKSLRLWT 519 (594)
Q Consensus 459 ~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~al~~~p~~---~-~~---~~-~--~~~~~~~~~~~~~~~~~~~ 519 (594)
++++..|+++.. .+..+.|.++|++|.+..|.. + +. .+ + |..+.+.+ .+-+
T Consensus 279 ---Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fens~Elq-------~Igm 348 (1226)
T KOG4279|consen 279 ---DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFENSLELQ-------QIGM 348 (1226)
T ss_pred ---ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhccchHHHH-------HHHH
Confidence 666666666532 345788999999999999962 1 11 11 1 33333322 4556
Q ss_pred HHHHHHHHhCChHHHHHHHHHHH
Q 007648 520 FYVDLEESLGNLESTRAVYERIL 542 (594)
Q Consensus 520 ~~~~~~~~~g~~~~A~~~~~~al 542 (594)
.+..+.-+.|..++-...++-+.
T Consensus 349 kLn~LlgrKG~leklq~YWdV~~ 371 (1226)
T KOG4279|consen 349 KLNSLLGRKGALEKLQEYWDVAT 371 (1226)
T ss_pred HHHHHhhccchHHHHHHHHhHHH
Confidence 77777788888887666665443
No 396
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=45.85 E-value=3.4e+02 Score=27.89 Aligned_cols=111 Identities=13% Similarity=0.090 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHh--cCCchhHhhh
Q 007648 423 HTLWVAFAKLYETYKDIANARVIFDKAVQ--VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRAT--AEPSVEVRRR 498 (594)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~kal~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~ 498 (594)
+.+|+.+...++..|+...-+..+..-+. .-..+.+.-.-+-.-+-+.++..+-+++|-++..+.. ....++.+.
T Consensus 169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~A- 247 (493)
T KOG2581|consen 169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWA- 247 (493)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHH-
Q ss_pred hhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHH
Q 007648 499 VAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI 551 (594)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 551 (594)
.+....|.+-.-.+++..|.+.+-+|+.+.|.+..+
T Consensus 248 -----------------RY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~al 283 (493)
T KOG2581|consen 248 -----------------RYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAAL 283 (493)
T ss_pred -----------------HHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhh
No 397
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=45.36 E-value=94 Score=32.35 Aligned_cols=124 Identities=15% Similarity=0.070 Sum_probs=76.7
Q ss_pred hcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhcc
Q 007648 435 TYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKS 514 (594)
Q Consensus 435 ~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 514 (594)
..|++-.|-.-+.-+|...|..| ..-...+.+....|+++.|...+..+-+.-.. + |
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p----~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s---------~----------~ 357 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDP----VLIQLRSVIFSHLGYYEQAYQDISDVEKIIGT---------T----------D 357 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCc----hhhHHHHHHHHHhhhHHHHHHHhhchhhhhcC---------C----------c
Confidence 57999999998999999999998 65555666667789999888876654333221 0 0
Q ss_pred HhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHH-------HHHHHHHhchhhhhhhcccCcccchhhh
Q 007648 515 LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIIN-------YALLLEVWTLLHVFLLHVPFTFSGLCMF 582 (594)
Q Consensus 515 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~-------~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 582 (594)
...-. ...-..++|..++|...-+-.+.-..++|++..- ++.+-...-.++..+...|-+.++|--|
T Consensus 358 ~~~~~-~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~ 431 (831)
T PRK15180 358 STLRC-RLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNF 431 (831)
T ss_pred hHHHH-HHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceee
Confidence 11111 1122236788888888887777766677765432 2333223333444446667777766543
No 398
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.23 E-value=2.9e+02 Score=26.62 Aligned_cols=169 Identities=7% Similarity=0.076 Sum_probs=87.3
Q ss_pred CchhHHHHHHHHHHHHHhcCCChH----HHHHHHHHHHhcccHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHc
Q 007648 80 THPEYETLNNTFERALVTMHKMPR----IWIMYLETLTSQKFITKARRTFDRALCALP----VTQHDRIWEIYLRFVEQE 151 (594)
Q Consensus 80 ~~~~~~~A~~~~~~al~~~P~~~~----lw~~y~~~~~~~~~~~~A~~~~~ral~~~p----~~~~~~~w~~~~~~~~~~ 151 (594)
...+.++|.+-|+++|.+.|...+ +.-..+.+..+++++++....|...+.... .+.+.......+++....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 446789999999999999886654 334445566677888777777766554322 111233333444444322
Q ss_pred CCchHHHHHHHHHHHhhCCCCH--H-------HHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHh
Q 007648 152 GIPIETSLRVYRRYLKYDPSHI--E-------DFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLT 222 (594)
Q Consensus 152 ~~~~~~a~~~~~~~l~~~p~~~--~-------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 222 (594)
.+. +-....|+..++.-.+.. . .+..++...+.|.+-.++++++-.. +.
T Consensus 119 ~~m-~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~S---------------------Cq 176 (440)
T KOG1464|consen 119 KNM-DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQS---------------------CQ 176 (440)
T ss_pred hhh-HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHH---------------------hc
Confidence 222 334445554443221111 0 2334444445554444444433210 00
Q ss_pred -hcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccc
Q 007648 223 -THATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVR 283 (594)
Q Consensus 223 -~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 283 (594)
..+. .-.+++.. ..+++-.-.++|..+++..+-..+|+++|......+
T Consensus 177 ~edGe--------dD~kKGtQ-----LLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP 225 (440)
T KOG1464|consen 177 TEDGE--------DDQKKGTQ-----LLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIP 225 (440)
T ss_pred cccCc--------hhhhccch-----hhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCC
Confidence 0000 00111111 123455556778888888888899999997754433
No 399
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=44.16 E-value=1.4e+02 Score=34.82 Aligned_cols=82 Identities=10% Similarity=0.082 Sum_probs=49.3
Q ss_pred CchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCCh
Q 007648 398 NPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNF 477 (594)
Q Consensus 398 ~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~ 477 (594)
+++.-++-|++|+.++.... ...|-..-++-.+.|-|++|..+|. .+++....++..|+..+.+.+.+
T Consensus 888 ~ID~~L~ry~~AL~hLs~~~-----~~~~~e~~n~I~kh~Ly~~aL~ly~-------~~~e~~k~i~~~ya~hL~~~~~~ 955 (1265)
T KOG1920|consen 888 KIDDYLKRYEDALSHLSECG-----ETYFPECKNYIKKHGLYDEALALYK-------PDSEKQKVIYEAYADHLREELMS 955 (1265)
T ss_pred eHHHHHHHHHHHHHHHHHcC-----ccccHHHHHHHHhcccchhhhheec-------cCHHHHHHHHHHHHHHHHHhccc
Confidence 57778888888887643211 1112222333345565555554443 33444456788888888787888
Q ss_pred HHHHHHHHHHhcCC
Q 007648 478 KGALELMRRATAEP 491 (594)
Q Consensus 478 ~~A~~~~~~al~~~ 491 (594)
++|.-+|+++=+..
T Consensus 956 ~~Aal~Ye~~Gkle 969 (1265)
T KOG1920|consen 956 DEAALMYERCGKLE 969 (1265)
T ss_pred cHHHHHHHHhccHH
Confidence 88888887765543
No 400
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=43.87 E-value=2.7e+02 Score=28.54 Aligned_cols=99 Identities=13% Similarity=0.186 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcC--ChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccH
Q 007648 438 DIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK--NFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSL 515 (594)
Q Consensus 438 ~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 515 (594)
-.+.-..+.+.|++.+|++- .+|...--.+.+++ ++..=.++-+++++.+|- +-
T Consensus 90 ~ld~eL~~~~~~L~~npksY----~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~R--------------------Nf 145 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSY----GAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPR--------------------NF 145 (421)
T ss_pred hhHHHHHHHHHHHHhCchhH----HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcc--------------------cc
Confidence 56777888899999999997 88998888877655 356778888999999883 22
Q ss_pred hhHHHHHHHHHHh----CChHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 007648 516 RLWTFYVDLEESL----GNLESTRAVYERILDLRIATPQIIINYALLLE 560 (594)
Q Consensus 516 ~~~~~~~~~~~~~----g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~ 560 (594)
..|...--+.... ....+=..+-+++|.-++.|-.+|-+...++.
T Consensus 146 h~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 146 HAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred cchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 3443322222111 12334467888888888888889988877776
No 401
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.37 E-value=2.6e+02 Score=30.53 Aligned_cols=68 Identities=12% Similarity=0.089 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChh--hHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCch
Q 007648 425 LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVD--HLASIWCEWAEMELRHKNFKGALELMRRATAEPSV 493 (594)
Q Consensus 425 ~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 493 (594)
+|..-+ -..+..+|..+.+.|+..++-.|.+-. .+..+...+.-+++...++|+|.++++.|-+.+|.
T Consensus 357 LWn~A~-~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~ 426 (872)
T KOG4814|consen 357 LWNTAK-KLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ 426 (872)
T ss_pred HHHhhH-HHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc
Confidence 344333 344678899999999999997666543 34456666777788889999999999999999984
No 402
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=42.37 E-value=2.2e+02 Score=24.35 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=50.0
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHH-HHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcC
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFA-KLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK 475 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a-~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~ 475 (594)
++..+...+|-..=. .++ +..+| .....+|..+.--+++....+.+.-+| ++.+.++..+.+.|
T Consensus 70 ~NlKrVi~C~~~~n~----------~se-~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p----~~L~kia~Ay~klg 134 (161)
T PF09205_consen 70 GNLKRVIECYAKRNK----------LSE-YVDLALDILVKQGKKDQLDKIYNELKKNEEINP----EFLVKIANAYKKLG 134 (161)
T ss_dssp S-THHHHHHHHHTT-------------H-HHHHHHHHHHHTT-HHHHHHHHHHH-----S-H----HHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHhcc----------hHH-HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCH----HHHHHHHHHHHHhc
Confidence 677777777754211 112 12222 234478888888888888887666677 88889999999999
Q ss_pred ChHHHHHHHHHHhcCC
Q 007648 476 NFKGALELMRRATAEP 491 (594)
Q Consensus 476 ~~~~A~~~~~~al~~~ 491 (594)
+..+|.+++.+|.+..
T Consensus 135 ~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 135 NTREANELLKEACEKG 150 (161)
T ss_dssp -HHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHhc
Confidence 9999999999998763
No 403
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=41.75 E-value=2.6e+02 Score=27.95 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHhCChHHHHHHHHH
Q 007648 516 RLWTFYVDLEESLGNLESTRAVYER 540 (594)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~ 540 (594)
-.|.-+.+...+.|+..+|.+...+
T Consensus 238 IGyepFv~~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 238 IGYEPFVEACLKYGNKKEASKYIPK 262 (319)
T ss_pred CChHHHHHHHHHCCCHHHHHHHHHh
Confidence 4455555555566666666655555
No 404
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=41.60 E-value=3.9e+02 Score=27.42 Aligned_cols=72 Identities=18% Similarity=0.223 Sum_probs=48.6
Q ss_pred hCCCCH---HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHh
Q 007648 22 RNPFSL---KLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVT 97 (594)
Q Consensus 22 ~~P~~~---~~w~~~~~~~~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 97 (594)
.||+.. ..|....+....++|..|..+++..+...|.+.. +..+........ ....-++++|...+++.+..
T Consensus 124 ~~p~~~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~-~~~~~~l~~~y~---~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 124 ENPYEVFGDREWRRAKELFNRYDYGAAARILEELLRRLPGREE-YQRYKDLCEGYD---AWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh-HHHHHHHHHHHH---HHHccCHHHHHHHHHHHHHH
Confidence 356433 6777777777899999999999999987665555 333333221110 13456788999999998875
No 405
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=41.43 E-value=1.1e+03 Score=32.03 Aligned_cols=48 Identities=13% Similarity=0.214 Sum_probs=42.8
Q ss_pred cHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Q 007648 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEV 561 (594)
Q Consensus 514 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~ 561 (594)
...++..-|.|..++|+.++|-+.|..|+++.-.-+.+|..||.+..+
T Consensus 2811 ~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~ 2858 (3550)
T KOG0889|consen 2811 KAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDN 2858 (3550)
T ss_pred HHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 356788889999999999999999999999988889999999988654
No 406
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=41.32 E-value=36 Score=25.63 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=11.7
Q ss_pred HhCChHHHHHHHHHHHh
Q 007648 527 SLGNLESTRAVYERILD 543 (594)
Q Consensus 527 ~~g~~~~A~~~~~~al~ 543 (594)
..|++++|..+|..+++
T Consensus 18 ~~g~y~eA~~lY~~ale 34 (75)
T cd02684 18 QRGDAAAALSLYCSALQ 34 (75)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 34777777777777766
No 407
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=41.24 E-value=66 Score=30.55 Aligned_cols=51 Identities=22% Similarity=0.314 Sum_probs=33.8
Q ss_pred chhHHHHHHHHHhc----cCCCcccCCchHHHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 007648 399 PTKQILTYTEAVRT----VDPMKAVGKPHTLWVAFAKLYE-TYKDIANARVIFDKAVQ 451 (594)
Q Consensus 399 ~~~a~~~y~~Ai~~----~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~kal~ 451 (594)
.++|...|++|+.. +||.++. ...+.++++.|+. ..|+.++|+.+-++|+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~--rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPL--RLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHH--HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcH--HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36678888888853 4554322 3456667777765 58888888888777764
No 408
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=40.86 E-value=2.5e+02 Score=24.51 Aligned_cols=62 Identities=10% Similarity=0.036 Sum_probs=40.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCc
Q 007648 427 VAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS 492 (594)
Q Consensus 427 ~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 492 (594)
+.....-...++.+.+..++.-.--.-|+.+ .+-..-+.+.+..|++.+|..+|++.....|
T Consensus 14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~----e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 14 IEVLMYALRSADPYDAQAMLDALRVLRPNLK----ELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCcc----ccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 3444444456777777777777666778877 4444444444567788888888877776655
No 409
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=40.38 E-value=1.2e+02 Score=28.86 Aligned_cols=51 Identities=16% Similarity=0.262 Sum_probs=33.2
Q ss_pred chhHHHHHHHHHhc----cCCCcccCCchHHHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 007648 399 PTKQILTYTEAVRT----VDPMKAVGKPHTLWVAFAKLYE-TYKDIANARVIFDKAVQ 451 (594)
Q Consensus 399 ~~~a~~~y~~Ai~~----~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~kal~ 451 (594)
.++|...|+.|+.. ++|.++. ...+.++++.|+. -.++.++|..+-++|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~Pi--rLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPI--RLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46788888888763 4554322 2345667777766 46888888877666664
No 410
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=40.07 E-value=5.2e+02 Score=28.04 Aligned_cols=110 Identities=12% Similarity=0.061 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHc-------------CChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q 007648 28 KLWWRYLVAKRE-------------APFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERA 94 (594)
Q Consensus 28 ~~w~~~~~~~~~-------------~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 94 (594)
..|..+.++++. ++.+.|....++.+..-+..+.+-.+- ...+. ...+........|+++
T Consensus 298 n~yk~a~KYLR~al~s~p~vlLl~~~~l~eal~~~e~~c~~~~~~lpi~~~~--~lle~-----~d~~~~~~l~~~~e~~ 370 (547)
T PF14929_consen 298 NAYKYAVKYLRLALQSNPPVLLLIGGRLKEALNELEKFCISSTCALPIRLRA--HLLEY-----FDQNNSSVLSSCLEDC 370 (547)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEeccccHHHHHHHHHHhccCCCccchHHHHH--HHHHH-----hCcccHHHHHHHHHHH
Confidence 788877777651 445555555555554333333322211 11111 2234556677777777
Q ss_pred HHhcCCChHHHHHHHHHHHhcccHHHHHHHHH---HHHHhCCCCCHHHHHHHHHHHHHH
Q 007648 95 LVTMHKMPRIWIMYLETLTSQKFITKARRTFD---RALCALPVTQHDRIWEIYLRFVEQ 150 (594)
Q Consensus 95 l~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~---ral~~~p~~~~~~~w~~~~~~~~~ 150 (594)
++.+|.+...-...+..... ...+.++++ --+.+.|. +.+|..+......
T Consensus 371 ~~~~P~~~~~le~l~~~~~~---~~~~~~Lle~i~~~l~~~~s---~~iwle~~~~~l~ 423 (547)
T PF14929_consen 371 LKKDPTMSYSLERLILLHQK---DYSAEQLLEMIALHLDLVPS---HPIWLEFVSCFLK 423 (547)
T ss_pred hcCCCcHHHHHHHHHhhhhh---HHHHHHHHHHHHHHhhcCCC---chHHHHHHHHHHh
Confidence 77777765544444333322 233333333 12233343 4677766665443
No 411
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=39.59 E-value=3.6 Score=35.46 Aligned_cols=113 Identities=13% Similarity=0.165 Sum_probs=60.5
Q ss_pred hcCCHHHHHHHHHHHHhcc-CCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhc
Q 007648 435 TYKDIANARVIFDKAVQVN-YKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHK 513 (594)
Q Consensus 435 ~~~~~~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 513 (594)
+.+.+......++.++... ..++ .+.-.++.++.+.+.+++....++.--..+++.+ .+...
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~----~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~~~~-------------~~~c~ 81 (143)
T PF00637_consen 19 ERNQPEELIEYLEALVKENKENNP----DLHTLLLELYIKYDPYEKLLEFLKTSNNYDLDKA-------------LRLCE 81 (143)
T ss_dssp TTT-GGGCTCCHHHHHHTSTC-SH----HHHHHHHHHHHCTTTCCHHHHTTTSSSSS-CTHH-------------HHHHH
T ss_pred hCCCHHHHHHHHHHHHhcccccCH----HHHHHHHHHHHhcCCchHHHHHcccccccCHHHH-------------HHHHH
Confidence 4556666677777777544 3345 5666666666666555555555552222222111 01111
Q ss_pred cHhhHHHHHHHHHHhCChHHHHHH------HHHHHh--ccCCchHHHHHHHHHHHHhch
Q 007648 514 SLRLWTFYVDLEESLGNLESTRAV------YERILD--LRIATPQIIINYALLLEVWTL 564 (594)
Q Consensus 514 ~~~~~~~~~~~~~~~g~~~~A~~~------~~~al~--~~P~~~~~~~~~~~~~~~~g~ 564 (594)
...+|...+-++.+.|++++|..+ +++|++ .+-+++++|..++..+...+.
T Consensus 82 ~~~l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 82 KHGLYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp TTTSHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTSTC
T ss_pred hcchHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 234555555567777777776653 233333 234567888888777765543
No 412
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=39.35 E-value=63 Score=19.09 Aligned_cols=28 Identities=4% Similarity=0.207 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhc
Q 007648 517 LWTFYVDLEESLGNLESTRAVYERILDL 544 (594)
Q Consensus 517 ~~~~~~~~~~~~g~~~~A~~~~~~al~~ 544 (594)
.|...++...+.|+++.|..+++...+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4667778888999999999999987763
No 413
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.35 E-value=6e+02 Score=28.56 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHh
Q 007648 251 LWTSLADYYIRRELFEKARDIFEEGMM 277 (594)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (594)
+.-.|+.+|...+++..|..+|-.+.+
T Consensus 507 L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 507 LLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHHHHccChHHHHHHHHhccC
Confidence 445599999999999999999988754
No 414
>KOG1972 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.81 E-value=1.4e+02 Score=33.29 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=25.6
Q ss_pred cCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 007648 98 MHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPV 134 (594)
Q Consensus 98 ~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~ 134 (594)
.|+++..|..|..++.+.++.+..-.++.+|+..+|.
T Consensus 832 l~~~~~~WR~yl~~lskl~~~~~~~~~~tkA~~sCpW 868 (913)
T KOG1972|consen 832 LPDENSKWRDYLEALSKLLNKERSKAASTKALDSCPW 868 (913)
T ss_pred CCcchhHHHHHHHHHHHhhhhhhhHHHHHHHhhcCch
Confidence 3666677777777777766666666677777777774
No 415
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=38.66 E-value=1.3e+02 Score=30.93 Aligned_cols=51 Identities=10% Similarity=-0.072 Sum_probs=44.3
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhh
Q 007648 519 TFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFL 569 (594)
Q Consensus 519 ~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~ 569 (594)
-.+.-.|.++++.+-|+..--|.|-++|.++....+-+-+.....+|.+|-
T Consensus 232 tklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAa 282 (569)
T PF15015_consen 232 TKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAA 282 (569)
T ss_pred HHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 444556778899999999999999999999999888899999999998884
No 416
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=38.62 E-value=62 Score=27.01 Aligned_cols=39 Identities=13% Similarity=0.242 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHH
Q 007648 252 WTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFD 290 (594)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~ 290 (594)
-+.+|+.+...|+.++|...|-+|+...|...++..+|.
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~q 104 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIYQ 104 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 467788889999999999999999999998775444443
No 417
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=38.61 E-value=44 Score=25.31 Aligned_cols=14 Identities=14% Similarity=0.418 Sum_probs=5.5
Q ss_pred CChHHHHHHHHHHH
Q 007648 529 GNLESTRAVYERIL 542 (594)
Q Consensus 529 g~~~~A~~~~~~al 542 (594)
|++++|..+|..+|
T Consensus 20 g~y~eAl~~Y~~ai 33 (77)
T cd02683 20 GRFQEALVCYQEGI 33 (77)
T ss_pred ccHHHHHHHHHHHH
Confidence 34444443333333
No 418
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=38.58 E-value=2.1e+02 Score=28.55 Aligned_cols=92 Identities=20% Similarity=0.182 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHh
Q 007648 437 KDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLR 516 (594)
Q Consensus 437 ~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 516 (594)
-+......+|.-.....|+..-++|. +...-.......+..+.+..... |. + . ..-.
T Consensus 310 tDW~~I~aLYdaL~~~apSPvV~LNR-----AVAla~~~Gp~agLa~ve~L~~~-~~-----L---------~---gy~~ 366 (415)
T COG4941 310 TDWPAIDALYDALEQAAPSPVVTLNR-----AVALAMREGPAAGLAMVEALLAR-PR-----L---------D---GYHL 366 (415)
T ss_pred CChHHHHHHHHHHHHhCCCCeEeehH-----HHHHHHhhhHHhHHHHHHHhhcc-cc-----c---------c---cccc
Confidence 45666667777666677766533332 22222233456666665544433 31 0 0 0125
Q ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHH
Q 007648 517 LWTFYVDLEESLGNLESTRAVYERILDLRIATPQI 551 (594)
Q Consensus 517 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 551 (594)
+|..-+++..++|..++|+..|++|+.+-++.++-
T Consensus 367 ~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 367 YHAARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred cHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 67888999999999999999999999998877753
No 419
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=37.52 E-value=1.6e+02 Score=27.42 Aligned_cols=69 Identities=14% Similarity=0.096 Sum_probs=53.8
Q ss_pred HhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCch--
Q 007648 472 LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP-- 549 (594)
Q Consensus 472 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~-- 549 (594)
++.+.+.+|+...+.-++..|. +...-..+.+++.-.|++++|..-++-+-++.|+..
T Consensus 12 L~~~sL~dai~~a~~qVkakPt--------------------da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~ 71 (273)
T COG4455 12 LDDNSLQDAIGLARDQVKAKPT--------------------DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG 71 (273)
T ss_pred HHhccHHHHHHHHHHHHhcCCc--------------------cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence 4678899999999999999995 335556677788888999999999999999888765
Q ss_pred -HHHHHHHHHHH
Q 007648 550 -QIIINYALLLE 560 (594)
Q Consensus 550 -~~~~~~~~~~~ 560 (594)
..+.++.+++.
T Consensus 72 a~lyr~lir~ea 83 (273)
T COG4455 72 ASLYRHLIRCEA 83 (273)
T ss_pred HHHHHHHHHHHH
Confidence 35555555543
No 420
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=37.35 E-value=3e+02 Score=29.90 Aligned_cols=77 Identities=9% Similarity=0.094 Sum_probs=54.6
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCC
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~ 476 (594)
...+.++...+.-+ |.. .+.+...+.-+.+...-+..++|-.+|++.+..+|++. ++.|++-+.+.|-
T Consensus 22 ~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 89 (578)
T PRK15490 22 KKLAQAVALIDSEL---PTE---ALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDEA------RYEYARRLYNTGL 89 (578)
T ss_pred hhHHHHHHHHHHhC---Ccc---chhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcch------HHHHHHHHHhhhh
Confidence 34565665555422 221 12444555667777778888999999999999988864 6788888888888
Q ss_pred hHHHHHHHH
Q 007648 477 FKGALELMR 485 (594)
Q Consensus 477 ~~~A~~~~~ 485 (594)
...|+.+++
T Consensus 90 ~~~~~~~~~ 98 (578)
T PRK15490 90 AKDAQLILK 98 (578)
T ss_pred hhHHHHHHH
Confidence 888888887
No 421
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=37.04 E-value=1.7e+02 Score=22.40 Aligned_cols=29 Identities=10% Similarity=0.047 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 007648 82 PEYETLNNTFERALVTMHKMPRIWIMYLE 110 (594)
Q Consensus 82 ~~~~~A~~~~~~al~~~P~~~~lw~~y~~ 110 (594)
.+.++|+..++++|+..++++.-|..++-
T Consensus 20 ~~~~~Al~~W~~aL~k~~~~~~rf~~lG~ 48 (80)
T PF10579_consen 20 NETQQALQKWRKALEKITDREDRFRVLGY 48 (80)
T ss_pred chHHHHHHHHHHHHhhcCChHHHHHHHHH
Confidence 33456666666666666666655555443
No 422
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=35.55 E-value=46 Score=25.18 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=13.4
Q ss_pred HhCChHHHHHHHHHHHhc
Q 007648 527 SLGNLESTRAVYERILDL 544 (594)
Q Consensus 527 ~~g~~~~A~~~~~~al~~ 544 (594)
+.|++++|..+|..+++.
T Consensus 18 ~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HccCHHHHHHHHHHHHHH
Confidence 457888888888877773
No 423
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=35.42 E-value=2.7e+02 Score=23.32 Aligned_cols=108 Identities=14% Similarity=0.085 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcc----CCChhh---HHHH-HHHHHHHHHhcCChHHHHHHHHHHhcCCc
Q 007648 423 HTLWVAFAKLYE--TYKDIANARVIFDKAVQVN----YKTVDH---LASI-WCEWAEMELRHKNFKGALELMRRATAEPS 492 (594)
Q Consensus 423 ~~~~~~~a~~~~--~~~~~~~A~~~~~kal~~~----p~~~~~---~~~~-~~~~~~~~~~~~~~~~A~~~~~~al~~~p 492 (594)
...|+.+++-+. ..|-+++|-.-+.+|+... |+.... ++.+ +-.++......|.++++...-++++.-.-
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 455666666555 4688999999999998753 332211 2111 22333445678999999888888876432
Q ss_pred hhHhhhhhccCChhhhHHhhccHhhHH----HHHHHHHHhCChHHHHHHHHHHHh
Q 007648 493 VEVRRRVAADGNEPVQMKLHKSLRLWT----FYVDLEESLGNLESTRAVYERILD 543 (594)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~A~~~~~~al~ 543 (594)
- +-+..+ +.-.+|+ ..+..+..+|..++|.+.|+.+-+
T Consensus 87 R----RGEL~q---------deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 87 R----RGELHQ---------DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp H----H--TTS---------THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred h----cccccc---------ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 0 000111 1234453 445566789999999999998865
No 424
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=35.27 E-value=98 Score=18.31 Aligned_cols=28 Identities=11% Similarity=-0.056 Sum_probs=22.4
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHh
Q 007648 535 RAVYERILDLRIATPQIIINYALLLEVW 562 (594)
Q Consensus 535 ~~~~~~al~~~P~~~~~~~~~~~~~~~~ 562 (594)
++.-.+++..+|.+-.+|...-.++.+.
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 5667788999999999999877776543
No 425
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=34.92 E-value=1.8e+02 Score=31.20 Aligned_cols=66 Identities=12% Similarity=0.207 Sum_probs=50.0
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-hhhHHHHHHHHHHHHHhcC---ChHHHHHHHHHHhcCCc
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKT-VDHLASIWCEWAEMELRHK---NFKGALELMRRATAEPS 492 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~-~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p 492 (594)
...+|-.||....+.+++..||.-|++|++...++ | ++-....+.- ..| +....+++|+...+-.|
T Consensus 586 ~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedip----dvi~diin~i-eGgpp~dVq~Vrem~dhlak~ap 655 (1141)
T KOG1811|consen 586 TFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIP----DVIFDIINLI-EGGPPRDVQDVREMLDHLAKPAP 655 (1141)
T ss_pred cccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccc----hHHHHHHHhh-cCCCcchHHHHHHHHHHhccCCc
Confidence 45789999999999999999999999999976544 5 5555555432 233 46678889988887766
No 426
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.91 E-value=1.3e+02 Score=30.65 Aligned_cols=147 Identities=11% Similarity=0.058 Sum_probs=87.5
Q ss_pred HHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc----CCChhhHHH
Q 007648 389 HRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVN----YKTVDHLAS 462 (594)
Q Consensus 389 ~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~----p~~~~~~~~ 462 (594)
..++..+. |+.+.|...|-++-.-|-.. ......|+++..+-.-.|++......-.+|.+.. --.......
T Consensus 154 ~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~---khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 154 EDLGDHYLDCGQLDNALRCYSRARDYCTSA---KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHhccHHHHHhhhhhhhhhhcch---HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 34455553 89999999999976655332 1257788888887777888888888888777641 111111124
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCC--------chhH--hhhhh----ccCCh--------hhhHHhh-ccHhhHH
Q 007648 463 IWCEWAEMELRHKNFKGALELMRRATAEP--------SVEV--RRRVA----ADGNE--------PVQMKLH-KSLRLWT 519 (594)
Q Consensus 463 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~--~~~~~----~~~~~--------~~~~~~~-~~~~~~~ 519 (594)
+.+.-|...+..++++.|.+.|-.+..-. |.+. |..+- |+... .....+. -+|.+|-
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr~ 310 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLRE 310 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHHH
Confidence 55555666667779999988887765432 2222 21111 22100 0011111 3688887
Q ss_pred HHHHHHHHhCChHHHHHHHHH
Q 007648 520 FYVDLEESLGNLESTRAVYER 540 (594)
Q Consensus 520 ~~~~~~~~~g~~~~A~~~~~~ 540 (594)
-...++. ++|..+..++++
T Consensus 311 il~~fy~--sky~~cl~~L~~ 329 (466)
T KOG0686|consen 311 ILFKFYS--SKYASCLELLRE 329 (466)
T ss_pred HHHHHhh--hhHHHHHHHHHH
Confidence 7777776 457776666665
No 427
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=34.71 E-value=5.7e+02 Score=27.69 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcCCchh
Q 007648 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVE 494 (594)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 494 (594)
.+|..||...++.+++..||+-|.++++...++
T Consensus 588 ~aW~AWGlA~Lk~e~~aaAR~KFkqafklkged 620 (1141)
T KOG1811|consen 588 GAWHAWGLACLKAENLAAAREKFKQAFKLKGED 620 (1141)
T ss_pred cHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCc
Confidence 799999999999999999999999999987543
No 428
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.22 E-value=6.1e+02 Score=27.15 Aligned_cols=65 Identities=15% Similarity=0.106 Sum_probs=47.2
Q ss_pred HHHHhc--CCchhHHHHHHHHHhccCCCc-ccCCchHHHHHHHHHHHhcCC-HHHHHHHHHHHHhccCC
Q 007648 391 RVKIFE--GNPTKQILTYTEAVRTVDPMK-AVGKPHTLWVAFAKLYETYKD-IANARVIFDKAVQVNYK 455 (594)
Q Consensus 391 ~~~~~~--~~~~~a~~~y~~Ai~~~~~~~-~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~kal~~~p~ 455 (594)
+|.++. |+...|..+|..++......+ ..-..+.+.+.+|.+++..|. .++++..+.+|-....+
T Consensus 455 ~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 455 KGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 444553 788889999999985311111 112367899999999997776 99999999999976533
No 429
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=33.06 E-value=66 Score=24.55 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=8.6
Q ss_pred CChHHHHHHHHHHhcC
Q 007648 475 KNFKGALELMRRATAE 490 (594)
Q Consensus 475 ~~~~~A~~~~~~al~~ 490 (594)
|+.+.|+.+|++|+..
T Consensus 22 g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 22 GDKEQALAHYRKGLRE 37 (79)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 5555555555555543
No 430
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=31.68 E-value=3e+02 Score=24.95 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=8.6
Q ss_pred hcCChHHHHHHHHHHhc
Q 007648 473 RHKNFKGALELMRRATA 489 (594)
Q Consensus 473 ~~~~~~~A~~~~~~al~ 489 (594)
+.|.+++|.+++++..+
T Consensus 123 ~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 123 ENGEFKKAEEVLKRLFS 139 (200)
T ss_pred hcCchHHHHHHHHHHhc
Confidence 34555555555555544
No 431
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=31.64 E-value=60 Score=33.13 Aligned_cols=45 Identities=18% Similarity=0.031 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhhhcccCc
Q 007648 531 LESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFLLHVPFT 575 (594)
Q Consensus 531 ~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~~~~~~~ 575 (594)
.-+|..++|.+++.+|.|+++...+.++|...|-...|..+|..+
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 357889999999999999999999999999999999998776544
No 432
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=31.49 E-value=1.9e+02 Score=21.80 Aligned_cols=14 Identities=21% Similarity=0.086 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhc
Q 007648 85 ETLNNTFERALVTM 98 (594)
Q Consensus 85 ~~A~~~~~~al~~~ 98 (594)
.+|..++.+|++.+
T Consensus 4 ~~A~~l~~~Ave~d 17 (75)
T cd02677 4 EQAAELIRLALEKE 17 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666665543
No 433
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=31.30 E-value=59 Score=24.39 Aligned_cols=17 Identities=29% Similarity=0.579 Sum_probs=10.3
Q ss_pred HhCChHHHHHHHHHHHh
Q 007648 527 SLGNLESTRAVYERILD 543 (594)
Q Consensus 527 ~~g~~~~A~~~~~~al~ 543 (594)
..|++++|..+|.+|++
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 18 NAGNYEEALRLYQHALE 34 (75)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 34666666666666655
No 434
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=30.68 E-value=6.6e+02 Score=26.42 Aligned_cols=125 Identities=12% Similarity=0.059 Sum_probs=75.1
Q ss_pred cCChhHHHHHHHHHHHhCCCChHHHHH-HHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccc
Q 007648 39 EAPFKKRFVIYERALKALPGSYKLWHA-YLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKF 117 (594)
Q Consensus 39 ~~~~~~a~~~~e~al~~~P~s~~lW~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~ 117 (594)
.+++..+.++|.|.-+..-.++-+..+ .+.-.+ + +. .-.++.+.-....-..-+..|.++-+-.--+-...+++.
T Consensus 19 q~~~~esEkifskI~~e~~~~~f~lkeEvl~gri--l-nA-ffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 19 QKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRI--L-NA-FFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHH--H-HH-HHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence 688999999999999887766655542 111110 0 00 012333444444444445578877777777777788999
Q ss_pred HHHHHHHHHHHHHhCCCCC-----------HHHHHHHHHHH--HHHcCCchHHHHHHHHHHHhh
Q 007648 118 ITKARRTFDRALCALPVTQ-----------HDRIWEIYLRF--VEQEGIPIETSLRVYRRYLKY 168 (594)
Q Consensus 118 ~~~A~~~~~ral~~~p~~~-----------~~~~w~~~~~~--~~~~~~~~~~a~~~~~~~l~~ 168 (594)
++.|.+.+-..-....... -..+|...... .-..|.+ .+++.++++.+..
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f-~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRF-SEGRAILNRIIER 157 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCc-chHHHHHHHHHHH
Confidence 9999999988776533321 01233322221 2246777 7888888777654
No 435
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=30.09 E-value=6.9e+02 Score=28.71 Aligned_cols=112 Identities=12% Similarity=0.100 Sum_probs=73.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHh---cCChHHHHHHHHHHhcCCchhHhhhhhccCCh
Q 007648 429 FAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELR---HKNFKGALELMRRATAEPSVEVRRRVAADGNE 505 (594)
Q Consensus 429 ~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 505 (594)
+-+.+.+.|+.++|-.++.+.- ..|.. .....++.++.+ .-+..++....+++-+..|...
T Consensus 713 LL~sy~~~g~~erA~glwnK~Q-V~k~~-----~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~---------- 776 (1088)
T KOG4318|consen 713 LLQSYLEEGRIERASGLWNKDQ-VSKSP-----MKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFP---------- 776 (1088)
T ss_pred HHHHHHhhhHHHHHHhHHhhCc-CCcch-----HHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccc----------
Confidence 4446667888999999988876 33333 233344544432 2367888888888887766311
Q ss_pred hhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHhc
Q 007648 506 PVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR-IATPQIIINYALLLEVWT 563 (594)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~~~~~~~~~g 563 (594)
.....+..|+-+..+....+.|.++++|.-+.. |.+++.+.++...+..+.
T Consensus 777 -------ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~tad~ls~f~k~L~~nd 828 (1088)
T KOG4318|consen 777 -------TTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVSTADELSDFLKCLVKND 828 (1088)
T ss_pred -------cchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhcC
Confidence 133556677777777777778899998877644 566777777777776544
No 436
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=29.38 E-value=95 Score=31.60 Aligned_cols=47 Identities=15% Similarity=0.175 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccc------------HHHHHHHHHHHHHh
Q 007648 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQKF------------ITKARRTFDRALCA 131 (594)
Q Consensus 83 ~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~------------~~~A~~~~~ral~~ 131 (594)
-+..|...+++|. +-++|..|+..|+.++..|| +.+|..++.+|=..
T Consensus 333 l~~~Al~yL~kA~--d~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 333 LIKKALEYLKKAQ--DEDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHH--HS--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh--ccCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 3455666666664 47889999999999999875 45566666666543
No 437
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=28.98 E-value=1.7e+02 Score=27.81 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHh-----ccCCChhhHHHHHHHHHHHHH-hcCChHHHHHHHHHHhcC
Q 007648 439 IANARVIFDKAVQ-----VNYKTVDHLASIWCEWAEMEL-RHKNFKGALELMRRATAE 490 (594)
Q Consensus 439 ~~~A~~~~~kal~-----~~p~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~ 490 (594)
.++|...|++|+. ..|.+|--+ .+.+.++.|+. -.|+.++|+++.++|+..
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rL-gl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRL-GLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHH-HHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4677777777765 367777433 57777888764 479999999888877654
No 438
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=27.92 E-value=5.8e+02 Score=24.89 Aligned_cols=130 Identities=10% Similarity=0.011 Sum_probs=74.1
Q ss_pred HHHHHcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-ccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 007648 34 LVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSI-VKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETL 112 (594)
Q Consensus 34 ~~~~~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~ 112 (594)
-....++++++....|++..+....+.+-...|....... +.........-.....+++.=+..+|+|...|+..+.+.
T Consensus 8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~ 87 (277)
T PF13226_consen 8 RELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYW 87 (277)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 3355689999999999999877654333332233222110 000000001112456677777788999999999998887
Q ss_pred HhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHHHHH
Q 007648 113 TSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIE 178 (594)
Q Consensus 113 ~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~ 178 (594)
.... ---|.-.. .......-|....... +.|...+.+++.++|.....+..
T Consensus 88 ~~~A-------w~~RG~~~-A~~V~~~~W~~~~~~~-------d~A~~~ll~A~~l~pr~~~A~~~ 138 (277)
T PF13226_consen 88 VHRA-------WDIRGSGY-ASTVTEAQWLGAHQAC-------DQAVAALLKAIELSPRPVAAAIG 138 (277)
T ss_pred HHHH-------HHHHccch-hcccCHHHHHHHHHHH-------HHHHHHHHHHHhcCCCchHHHHH
Confidence 6521 00011110 0111245676554443 78888888888888888764443
No 439
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=27.87 E-value=82 Score=30.96 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh
Q 007648 400 TKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTV 457 (594)
Q Consensus 400 ~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~ 457 (594)
.+|+.+|++|++. ++.|+.-+|+..|..|+++.|+--
T Consensus 17 kkA~~l~~~av~~---------------------Eq~G~l~dai~fYR~AlqI~~diE 53 (366)
T KOG2997|consen 17 KKAIALYEKAVLK---------------------EQDGSLYDAINFYRDALQIVPDIE 53 (366)
T ss_pred HHHHHHHHHHHHH---------------------hhcCcHHHHHHHHHhhhcCCchHH
Confidence 5677888888763 457888889999999999888764
No 440
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=27.51 E-value=2e+02 Score=24.83 Aligned_cols=42 Identities=10% Similarity=-0.042 Sum_probs=32.8
Q ss_pred HHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhh
Q 007648 526 ESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHV 567 (594)
Q Consensus 526 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~ 567 (594)
...|++.-|..+.+.++..+|++.++..-.+..+.+.|.-.+
T Consensus 81 ~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 81 LAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 356889999999999999999999999999999988875443
No 441
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=26.74 E-value=5.9e+02 Score=24.61 Aligned_cols=101 Identities=13% Similarity=0.095 Sum_probs=68.9
Q ss_pred CCCChHHHHHHHHHhc------CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcC-------CHHHHHHHHH
Q 007648 381 NPHNVEQWHRRVKIFE------GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYK-------DIANARVIFD 447 (594)
Q Consensus 381 ~p~~~~~~~~~~~~~~------~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~-------~~~~A~~~~~ 447 (594)
...++.+.+.++.++. .+..+|...|++|.+.-.+. ....-+.++.++...+ +...|+..|.
T Consensus 105 ~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~-----a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~ 179 (292)
T COG0790 105 ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVE-----AALAMYRLGLAYLSGLQALAVAYDDKKALYLYR 179 (292)
T ss_pred hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChh-----HHHHHHHHHHHHHcChhhhcccHHHHhHHHHHH
Confidence 4466777777888774 27899999999999853221 0222566676666431 3348999999
Q ss_pred HHHhccCCChhhHHHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCc
Q 007648 448 KAVQVNYKTVDHLASIWCEWAEMELR----HKNFKGALELMRRATAEPS 492 (594)
Q Consensus 448 kal~~~p~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p 492 (594)
+|-... ++ ...+.++.++.. ..++++|..+|.+|.+...
T Consensus 180 ~aa~~~--~~----~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 180 KAAELG--NP----DAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHhc--CH----HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 988755 33 455566665543 2478999999999998865
No 442
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=26.70 E-value=2.9e+02 Score=23.61 Aligned_cols=55 Identities=5% Similarity=-0.005 Sum_probs=27.3
Q ss_pred HHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHh
Q 007648 110 ETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLK 167 (594)
Q Consensus 110 ~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~ 167 (594)
.....+|+-++.-+++....+. .. ..+.+...++..+..+|+. .++.++.+++.+
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn-~~-~~p~~L~kia~Ay~klg~~-r~~~ell~~ACe 148 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKN-EE-INPEFLVKIANAYKKLGNT-REANELLKEACE 148 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-H-HHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHhhc-cC-CCHHHHHHHHHHHHHhcch-hhHHHHHHHHHH
Confidence 3445555555555555555431 11 1245555566666666666 666666666654
No 443
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=26.31 E-value=2.3e+02 Score=21.60 Aligned_cols=46 Identities=15% Similarity=0.263 Sum_probs=30.7
Q ss_pred HHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhh
Q 007648 522 VDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHV 567 (594)
Q Consensus 522 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~ 567 (594)
..|...-++..++.+---++++.+|++|.++..|-....+..-+-.
T Consensus 14 ~~~~~~a~~~~~~l~~Al~~l~~~pdnP~~LA~~Qa~l~eyn~~RN 59 (80)
T PRK15326 14 AKFDTGVDNLQTQVTEALDKLAAKPSDPALLAAYQSKLSEYNLYRN 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3344445555566666666778999999998888777666554433
No 444
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=25.77 E-value=4.5e+02 Score=22.94 Aligned_cols=55 Identities=13% Similarity=0.053 Sum_probs=43.1
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTV 457 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~ 457 (594)
.+++++..+..- +..+.|. ...+-+--|.++...|++++|..+|+....-.|..|
T Consensus 24 ~d~~D~e~lLdA-LrvLrP~-----~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p 78 (153)
T TIGR02561 24 ADPYDAQAMLDA-LRVLRPN-----LKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP 78 (153)
T ss_pred CCHHHHHHHHHH-HHHhCCC-----ccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch
Confidence 678887777754 5556664 567777777788899999999999999998777766
No 445
>PF08640 U3_assoc_6: U3 small nucleolar RNA-associated protein 6; InterPro: IPR013949 This entry represents U3 nucleolar RNA-associated proteins which are involved in nucleolar processing of pre-18S ribosomal RNA [].
Probab=25.28 E-value=54 Score=25.26 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=30.0
Q ss_pred CcchHhHHHHhhCCCCHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 007648 11 EDDLLYEEELLRNPFSLKLWWRYLVAKREAPFKKRFVIYERAL 53 (594)
Q Consensus 11 ~~~~~~e~~l~~~P~~~~~w~~~~~~~~~~~~~~a~~~~e~al 53 (594)
..+..||..|.+.+.....++.||+++.+ .++.+..-.+.+
T Consensus 27 kkR~~fEy~L~rr~~~~~Dfl~YI~yE~~--L~~L~~~R~~~~ 67 (83)
T PF08640_consen 27 KKRRDFEYKLQRRGKKKSDFLRYIEYEMN--LEKLRRKRRKRL 67 (83)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHH--HHHHHHHHHHHh
Confidence 34678999999999999999999999853 444444444444
No 446
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=25.25 E-value=2.7e+02 Score=30.29 Aligned_cols=33 Identities=21% Similarity=0.179 Sum_probs=14.9
Q ss_pred CChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhc
Q 007648 529 GNLESTRAVYERILDLRIATPQIIINYALLLEVWT 563 (594)
Q Consensus 529 g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g 563 (594)
|..++|-.+|++.+..+|+ ..++.|++-+.+.|
T Consensus 56 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 88 (578)
T PRK15490 56 NETERAYALYETLIAQNND--EARYEYARRLYNTG 88 (578)
T ss_pred hhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhh
Confidence 4444555555555554444 33334444444433
No 447
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.21 E-value=7.5e+02 Score=25.56 Aligned_cols=147 Identities=13% Similarity=0.043 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccC
Q 007648 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADG 503 (594)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 503 (594)
.+.-.+++.|..-|+++.|...|.|+-.-.-.. .+--..|+.+..+-...|++........+|.+...... -+ ..
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~-khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~--~~--~q 225 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSA-KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANE--NL--AQ 225 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch-HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhh--hH--HH
Confidence 445566788888999999999999966544222 22236888888888888998888887777776631100 00 00
Q ss_pred ChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhc--------cCCchHHHHHH-----------HHHHHHhch
Q 007648 504 NEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL--------RIATPQIIINY-----------ALLLEVWTL 564 (594)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~~-----------~~~~~~~g~ 564 (594)
.. .+.+--.-|.....+++++.|.+.+-.+..- .|.+..++--+ -.-...++.
T Consensus 226 ~v--------~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~ 297 (466)
T KOG0686|consen 226 EV--------PAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNES 297 (466)
T ss_pred hc--------CcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchh
Confidence 00 1122222233333455677776666554331 23333332211 112334667
Q ss_pred hhhhhhcccCcccchhhhh
Q 007648 565 LHVFLLHVPFTFSGLCMFT 583 (594)
Q Consensus 565 ~~~a~~~~~~~~~~~~~~~ 583 (594)
|...++..|.+-+-+.-|+
T Consensus 298 Fk~flel~Pqlr~il~~fy 316 (466)
T KOG0686|consen 298 FKLFLELEPQLREILFKFY 316 (466)
T ss_pred hhhHHhcChHHHHHHHHHh
Confidence 7777777777765555444
No 448
>KOG1972 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.12 E-value=2.9e+02 Score=30.98 Aligned_cols=138 Identities=14% Similarity=0.090 Sum_probs=74.6
Q ss_pred hCCCCHHHHHHHHHHHH---------cCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHH
Q 007648 22 RNPFSLKLWWRYLVAKR---------EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFE 92 (594)
Q Consensus 22 ~~P~~~~~w~~~~~~~~---------~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 92 (594)
..+.+...|-.|.+... -++..+.+ .++..+..+|.+...|..|+.++-... ++.+.-.-
T Consensus 717 ~s~~~~~~y~~ycqiq~~~~~~S~l~f~~~~k~r-F~e~~v~~fsrn~~~~e~wa~l~s~l~----------qk~r~rl~ 785 (913)
T KOG1972|consen 717 LSLTEQSLYRSYCQIQIKHFWASNLAFYNLPKVR-FFEEGVTLFSRNAFGWELWAELESELR----------QKIRKRLS 785 (913)
T ss_pred cCchhHHHHHHHHHHHHHHHHhhhhhccccccee-eeccchhhccccchhHHHHHHHHHHHH----------HHHHHHHH
Confidence 34556678888875332 14556666 777778889999999999987763210 11111000
Q ss_pred HHHH-hcCCChHHHHHHHHHHHhcccH-HHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 007648 93 RALV-TMHKMPRIWIMYLETLTSQKFI-TKARRTFDRALCA-----LPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRY 165 (594)
Q Consensus 93 ~al~-~~P~~~~lw~~y~~~~~~~~~~-~~A~~~~~ral~~-----~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~ 165 (594)
+.-. .+..++.+|......+..-..+ ......|..+... .|.+ ..+|..|..+...+++. +....++.++
T Consensus 786 ~~k~~~~~~n~ai~~~~~i~e~~~~~i~~a~t~mf~n~~~si~d~~l~~~--~~~WR~yl~~lskl~~~-~~~~~~~tkA 862 (913)
T KOG1972|consen 786 STKNEVDGRNAAIHAEQVIPETGDDQIMSANTGMFRNADRSILDEELPDE--NSKWRDYLEALSKLLNK-ERSKAASTKA 862 (913)
T ss_pred HHhhhhcchhhhhccccccccchHHHHhHHHHHHHHHHHHhcccccCCcc--hhHHHHHHHHHHHhhhh-hhhHHHHHHH
Confidence 0000 0111112222111111111111 2223333222222 2332 58999999998887777 8888899999
Q ss_pred HhhCCCCH
Q 007648 166 LKYDPSHI 173 (594)
Q Consensus 166 l~~~p~~~ 173 (594)
+..+|=+.
T Consensus 863 ~~sCpW~K 870 (913)
T KOG1972|consen 863 LDSCPWAK 870 (913)
T ss_pred hhcCchHH
Confidence 98888665
No 449
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=25.04 E-value=7.4e+02 Score=25.15 Aligned_cols=46 Identities=11% Similarity=-0.021 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007648 437 KDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRR 486 (594)
Q Consensus 437 ~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 486 (594)
+.+-+|..++|.++...|.|+ .+-+.++.++...|-.+.|..+|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~----~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNY----QLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 456789999999999999999 7777888888889999999999964
No 450
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=25.03 E-value=1.1e+03 Score=27.11 Aligned_cols=60 Identities=15% Similarity=0.008 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc--cCCChhhHHHHHHHHHHHH--HhcCChHHHHHHHHHH
Q 007648 427 VAFAKLYETYKDIANARVIFDKAVQV--NYKTVDHLASIWCEWAEME--LRHKNFKGALELMRRA 487 (594)
Q Consensus 427 ~~~a~~~~~~~~~~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~a 487 (594)
++++.++...|+++.|...+.+.... .+. +..+-..-...+.+. ..+||...|.....+.
T Consensus 622 ~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 622 SMLAELEFLRGDLDKALAQLDELERLLLNGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 58888999999999999999887653 343 211111222222222 4579999999988883
No 451
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.89 E-value=9.4e+02 Score=26.33 Aligned_cols=30 Identities=20% Similarity=0.111 Sum_probs=19.0
Q ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 007648 100 KMPRIWIMYLETLTSQKFITKARRTFDRAL 129 (594)
Q Consensus 100 ~~~~lw~~y~~~~~~~~~~~~A~~~~~ral 129 (594)
+++.=|..++...+..+++..|.+.|.+|-
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 455666666666666666666666666654
No 452
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=24.72 E-value=9.1e+02 Score=26.13 Aligned_cols=66 Identities=18% Similarity=0.208 Sum_probs=41.3
Q ss_pred CchHHHHHHHHHHHh--cCCHHHHHHHHHHHHhc---cCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 007648 421 KPHTLWVAFAKLYET--YKDIANARVIFDKAVQV---NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRAT 488 (594)
Q Consensus 421 ~~~~~~~~~a~~~~~--~~~~~~A~~~~~kal~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 488 (594)
.++-+...||.+++- ..+-..+..+|.+|+.. .-+|-..+. |..+|-++.+.+++.+|....-.|-
T Consensus 275 ~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYP--Yty~gg~~yR~~~~~eA~~~Wa~aa 345 (618)
T PF05053_consen 275 RYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYP--YTYLGGYYYRHKRYREALRSWAEAA 345 (618)
T ss_dssp T-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHH--HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCcccc--ceehhhHHHHHHHHHHHHHHHHHHH
Confidence 378888888888773 44467788999999874 233432322 3445666778899999888877664
No 453
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=23.93 E-value=1.2e+03 Score=27.29 Aligned_cols=38 Identities=11% Similarity=0.214 Sum_probs=25.4
Q ss_pred HHHHHhccHHHHHHHHHHHHhhhccccc-hHHHHHHHHH
Q 007648 257 DYYIRRELFEKARDIFEEGMMTVVTVRD-FSVIFDSYSQ 294 (594)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~l~~~~~~ 294 (594)
+.+...+.+++|..-|++.-..+|+..+ +...|...+.
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGIT 521 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHH
Confidence 3445567889999999999988888653 2344443333
No 454
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=23.67 E-value=3.6e+02 Score=26.86 Aligned_cols=100 Identities=12% Similarity=0.155 Sum_probs=62.5
Q ss_pred hHHHHHHHHHhc--CCchhHHHHHH----HHHhccCCCcccCCchHHHHHHHHHHHh----cCCHHHHHHHHHHHHhccC
Q 007648 385 VEQWHRRVKIFE--GNPTKQILTYT----EAVRTVDPMKAVGKPHTLWVAFAKLYET----YKDIANARVIFDKAVQVNY 454 (594)
Q Consensus 385 ~~~~~~~~~~~~--~~~~~a~~~y~----~Ai~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~kal~~~p 454 (594)
.++|...+.++. |+.+.|.+.+. +++..-... ...-.-+.+|.++.. ...++.|..+++++-..+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~ki----DVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeR 179 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKI----DVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWER 179 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccch----hhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhh
Confidence 367777777774 66666655554 444321110 012223455666653 3567888888888776665
Q ss_pred CChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCch
Q 007648 455 KTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSV 493 (594)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 493 (594)
.| .+-...|.+-+.-.++++|-.+|-..+....+
T Consensus 180 rN-----RlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 180 RN-----RLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred hh-----hHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 55 34344455556678999999999999987764
No 455
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=22.94 E-value=6.4e+02 Score=23.72 Aligned_cols=109 Identities=14% Similarity=0.053 Sum_probs=62.8
Q ss_pred hcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhH-----hhhh-h--------
Q 007648 435 TYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEV-----RRRV-A-------- 500 (594)
Q Consensus 435 ~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~-~-------- 500 (594)
+.+++++|+...+.-++..|.+. ..-..+-+++.-.|++++|..-++-+-.+.|++. |+.+ .
T Consensus 13 ~~~sL~dai~~a~~qVkakPtda----~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~R~ev 88 (273)
T COG4455 13 DDNSLQDAIGLARDQVKAKPTDA----GGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAARNEV 88 (273)
T ss_pred HhccHHHHHHHHHHHHhcCCccc----cchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777776 5555555555567778888777777777777632 2111 0
Q ss_pred ccCC-hhhhHHhhccHhhHHHHHHHHHH---hCChHHHHHHHHHHHhccCCch
Q 007648 501 ADGN-EPVQMKLHKSLRLWTFYVDLEES---LGNLESTRAVYERILDLRIATP 549 (594)
Q Consensus 501 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~A~~~~~~al~~~P~~~ 549 (594)
|.+. ++.. +...+..|+..+..-.. -|.-+.+-++=+++++.-|..+
T Consensus 89 fag~~~Pgf--lg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 89 FAGGAVPGF--LGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred hccCCCCCC--cCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 1110 0000 00134556544433222 3455666677788888777654
No 456
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=22.88 E-value=1.3e+03 Score=27.19 Aligned_cols=104 Identities=19% Similarity=0.246 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHhccCCCCCchh-HHHHHHHHHHHHHhc------CCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 007648 60 YKLWHAYLIERLSIVKNLPITHPE-YETLNNTFERALVTM------HKMPRIWIMYLETLTSQKFITKARRTFDRALCAL 132 (594)
Q Consensus 60 ~~lW~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~------P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~ 132 (594)
+..|..|+.+..... ...+. ....+.+.++++... +.++.+...+.. +.......+++.+|.......
T Consensus 34 l~~w~ryi~wv~~~~----~~~~~~~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~-~~~~e~~~d~~d~f~~m~~kg 108 (974)
T KOG1166|consen 34 LDKWLRYIEWVLEVY----PEGKENQSLLRNLLERCLEELEDLKRYRNDPRFLILWCS-LELREELQDAEDFFSYLENKG 108 (974)
T ss_pred hhhhHhHhhhhhhcc----ccCCchhhhHHHHHHHHHHhccchhhccccHHHHHHHHh-HHHHHHHhhHHHHHHHHHhcc
Confidence 688999998874431 22233 677778888887754 445552222221 223345788889988776643
Q ss_pred CCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhC
Q 007648 133 PVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYD 169 (594)
Q Consensus 133 p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~ 169 (594)
-+..+...+..++..++..+.. .+|..+|+.+++..
T Consensus 109 Ig~~lalfYe~~a~~lE~k~~~-keA~~v~q~Giq~~ 144 (974)
T KOG1166|consen 109 IGTTLALFYEAYAKHLERKEYF-KEAKEVFQLGIQNK 144 (974)
T ss_pred ccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Confidence 2333456677777777777777 99999999998764
No 457
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=22.78 E-value=4.3e+02 Score=25.75 Aligned_cols=99 Identities=14% Similarity=0.236 Sum_probs=57.2
Q ss_pred CCCCcchHhHHHHhhCCCCHHHHHHHHHHHH---cCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhH
Q 007648 8 YPSEDDLLYEEELLRNPFSLKLWWRYLVAKR---EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEY 84 (594)
Q Consensus 8 ~~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~---~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~ 84 (594)
.++....-.+.++..+|.++..|..---... ..++.+=..+-++.|..+|.+.-.|. |=.+....+... .+-.++
T Consensus 89 ~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~-YR~~vl~~ie~~-~N~S~~ 166 (328)
T COG5536 89 LLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWS-YRRWVLRTIEDL-FNFSDL 166 (328)
T ss_pred hhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceee-eEeeeeecchhh-ccchhH
Confidence 3445555677788888888888874333222 34555666677888888888877775 222211000000 122333
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHH
Q 007648 85 ETLNNTFERALVTMHKMPRIWIMY 108 (594)
Q Consensus 85 ~~A~~~~~~al~~~P~~~~lw~~y 108 (594)
..-.+.=..++..+|.+...|...
T Consensus 167 k~e~eytt~~I~tdi~N~SaW~~r 190 (328)
T COG5536 167 KHELEYTTSLIETDIYNNSAWHHR 190 (328)
T ss_pred HHHHHhHHHHHhhCCCChHHHHHH
Confidence 344455555666778888888766
No 458
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=22.39 E-value=1.6e+02 Score=21.41 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhh
Q 007648 252 WTSLADYYIRRELFEKARDIFEEGMMT 278 (594)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (594)
...-|.-..+.|++++|...|.+++..
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 444556667789999999999999864
No 459
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=21.60 E-value=1.6e+02 Score=25.63 Aligned_cols=38 Identities=8% Similarity=0.104 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhc-cHHHHHHHHHHHHhhhccccchHHHH
Q 007648 252 WTSLADYYIRRE-LFEKARDIFEEGMMTVVTVRDFSVIF 289 (594)
Q Consensus 252 ~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~l~ 289 (594)
-+.+|+.+...| +.+++...|-.||..+|...++..+|
T Consensus 93 eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL~iy 131 (148)
T TIGR00985 93 EVQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLLSIY 131 (148)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 466788888889 99999999999999999877654444
No 460
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=21.56 E-value=3.8e+02 Score=25.47 Aligned_cols=82 Identities=12% Similarity=0.020 Sum_probs=52.0
Q ss_pred CChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCc------
Q 007648 475 KNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT------ 548 (594)
Q Consensus 475 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~------ 548 (594)
......+.++++|+.........+ .-..+-...+..+.+.|++++|.+.|+++......+
T Consensus 152 ~hs~~iI~lL~~A~~~f~~~~~~R--------------~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~ 217 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQFKKYGQNR--------------MASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLL 217 (247)
T ss_pred chHHHHHHHHHHHHHHHHHhccch--------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 344556777777776654210000 012455677888889999999999999996643322
Q ss_pred hHHHHHHHHHHHHhchhhhhhh
Q 007648 549 PQIIINYALLLEVWTLLHVFLL 570 (594)
Q Consensus 549 ~~~~~~~~~~~~~~g~~~~a~~ 570 (594)
..+...+..+..+.|+.+..+.
T Consensus 218 ~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 218 TEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHHHHHHHHhCCHHHHHH
Confidence 2455566777777888777653
No 461
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.98 E-value=5.9e+02 Score=28.61 Aligned_cols=30 Identities=10% Similarity=-0.272 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhchhhhhhhcccCcccchh
Q 007648 551 IIINYALLLEVWTLLHVFLLHVPFTFSGLC 580 (594)
Q Consensus 551 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 580 (594)
...-++.+|...|+|..|+.+|-.++.-.+
T Consensus 507 L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 507 LLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 333466666667777777666655544433
No 462
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=20.79 E-value=2.2e+02 Score=23.77 Aligned_cols=30 Identities=27% Similarity=0.195 Sum_probs=23.8
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 007648 106 IMYLETLTSQKFITKARRTFDRALCALPVT 135 (594)
Q Consensus 106 ~~y~~~~~~~~~~~~A~~~~~ral~~~p~~ 135 (594)
+..|+.++.+|+++++..-|-+|+..+|.+
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 356777777889999999899999999975
No 463
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=20.60 E-value=7.5e+02 Score=23.60 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHh-----ccCCchH---HHHHHHHHHHH-hchhhhhhh
Q 007648 531 LESTRAVYERILD-----LRIATPQ---IIINYALLLEV-WTLLHVFLL 570 (594)
Q Consensus 531 ~~~A~~~~~~al~-----~~P~~~~---~~~~~~~~~~~-~g~~~~a~~ 570 (594)
.+.|.+.|+.|++ +.|.||. +..|++-|+.. .++.++|++
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~ 192 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACN 192 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5689999999986 4588885 55788877664 466666653
No 464
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.57 E-value=1.3e+03 Score=26.45 Aligned_cols=111 Identities=14% Similarity=0.038 Sum_probs=58.0
Q ss_pred CChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhc-CCchhH-hhhhh--ccCChhh-hHHh----hccHhhHHHHHHHH
Q 007648 455 KTVDHLASIWCEWAEMELRHKNFKGALELMRRATA-EPSVEV-RRRVA--ADGNEPV-QMKL----HKSLRLWTFYVDLE 525 (594)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~-~~~~~--~~~~~~~-~~~~----~~~~~~~~~~~~~~ 525 (594)
.+++....+...||.++.+.|++++|...|-+++. .+|... ..++. --+++.. ...+ +.+.+--..+...|
T Consensus 362 ~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncY 441 (933)
T KOG2114|consen 362 LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCY 441 (933)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHH
Confidence 34455567777888877778888888888887775 345421 11110 0000000 0000 01222233445677
Q ss_pred HHhCChHHHHHHHHHHHhccCCchHH--HHHHHHHHHHhchhhhhh
Q 007648 526 ESLGNLESTRAVYERILDLRIATPQI--IINYALLLEVWTLLHVFL 569 (594)
Q Consensus 526 ~~~g~~~~A~~~~~~al~~~P~~~~~--~~~~~~~~~~~g~~~~a~ 569 (594)
.++++.++-.+..++ .+..... ...-..++.+.+-+++|.
T Consensus 442 iKlkd~~kL~efI~~----~~~g~~~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 442 IKLKDVEKLTEFISK----CDKGEWFFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred HHhcchHHHHHHHhc----CCCcceeeeHHHHHHHHHHhChHHHHH
Confidence 888888886655444 4411111 012236677888888885
No 465
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.35 E-value=4.6e+02 Score=21.07 Aligned_cols=36 Identities=14% Similarity=0.093 Sum_probs=31.3
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTV 457 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~ 457 (594)
.+-.+..+|.++.+.|+.+.|..-|+.--...|++.
T Consensus 71 pPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 71 PPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred CCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccch
Confidence 356778899999999999999999998877899996
No 466
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=20.09 E-value=3.7e+02 Score=32.03 Aligned_cols=115 Identities=13% Similarity=0.123 Sum_probs=74.5
Q ss_pred hhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcc--cCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007648 377 LLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKA--VGKPHTLWVAFAKLYETYKDIANARVIFDKAVQV 452 (594)
Q Consensus 377 ~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~ 452 (594)
.-...|....-+..++.++. ++.++|+..=.+|+........ .......+.+++.++...++...|...+.+++..
T Consensus 965 ~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 965 MGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred hhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 34556777777777777764 6777776666665542211110 1123456677777787888899999999998764
Q ss_pred -----cCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCc
Q 007648 453 -----NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS 492 (594)
Q Consensus 453 -----~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 492 (594)
.|+.|.. ..+......++...+.++.|...++.|++..-
T Consensus 1045 ~~Ls~ge~hP~~-a~~~~nle~l~~~v~e~d~al~~le~A~a~~~ 1088 (1236)
T KOG1839|consen 1045 KLLSSGEDHPPT-ALSFINLELLLLGVEEADTALRYLESALAKNK 1088 (1236)
T ss_pred hccccCCCCCch-hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 3445522 13444555555666889999999999998543
Done!