Query 007648
Match_columns 594
No_of_seqs 183 out of 1942
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 07:02:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007648.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007648hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e6h_A MRNA 3'-END-processing 100.0 2.3E-37 8E-42 336.1 43.5 450 9-551 48-577 (679)
2 2ooe_A Cleavage stimulation fa 100.0 7.6E-37 2.6E-41 329.4 41.7 428 16-549 2-497 (530)
3 1w3b_A UDP-N-acetylglucosamine 100.0 7.7E-33 2.6E-37 285.7 45.8 374 37-564 10-388 (388)
4 2ooe_A Cleavage stimulation fa 100.0 1.5E-32 5.2E-37 295.8 42.7 420 48-569 1-483 (530)
5 4e6h_A MRNA 3'-END-processing 100.0 2.1E-32 7.2E-37 297.2 43.9 440 42-588 48-586 (679)
6 1w3b_A UDP-N-acetylglucosamine 100.0 2.3E-30 8E-35 267.1 40.7 347 80-572 11-362 (388)
7 2uy1_A Cleavage stimulation fa 100.0 2.3E-31 7.8E-36 281.6 30.2 426 9-581 11-455 (493)
8 2xpi_A Anaphase-promoting comp 100.0 2.4E-29 8.1E-34 274.6 42.7 431 25-572 82-573 (597)
9 2xpi_A Anaphase-promoting comp 100.0 2.5E-29 8.6E-34 274.4 34.1 426 12-560 103-595 (597)
10 2y4t_A DNAJ homolog subfamily 100.0 8.3E-27 2.8E-31 245.1 40.8 388 9-568 8-444 (450)
11 2gw1_A Mitochondrial precursor 100.0 9.5E-27 3.2E-31 248.7 41.1 423 27-559 6-493 (514)
12 2y4t_A DNAJ homolog subfamily 100.0 1.2E-26 4.2E-31 243.8 37.5 354 44-563 10-377 (450)
13 3fp2_A TPR repeat-containing p 100.0 2.7E-27 9.4E-32 254.6 33.0 432 26-572 24-485 (537)
14 3ieg_A DNAJ homolog subfamily 100.0 5E-26 1.7E-30 230.7 40.1 118 427-564 238-355 (359)
15 2gw1_A Mitochondrial precursor 100.0 5.2E-26 1.8E-30 242.9 35.4 403 61-572 7-472 (514)
16 3fp2_A TPR repeat-containing p 99.9 4.6E-25 1.6E-29 237.1 35.1 428 9-554 41-501 (537)
17 3ieg_A DNAJ homolog subfamily 99.9 6.4E-24 2.2E-28 215.1 36.5 311 59-572 2-329 (359)
18 2uy1_A Cleavage stimulation fa 99.9 1.7E-24 5.7E-29 229.1 31.6 372 39-569 7-404 (493)
19 3hym_B Cell division cycle pro 99.9 7E-24 2.4E-28 212.5 30.6 297 51-566 13-322 (330)
20 4g1t_A Interferon-induced prot 99.9 5.4E-23 1.8E-27 217.5 36.2 387 28-556 52-471 (472)
21 2ond_A Cleavage stimulation fa 99.9 5.1E-24 1.8E-28 212.4 26.4 247 56-493 4-273 (308)
22 3hym_B Cell division cycle pro 99.9 9.8E-23 3.3E-27 204.1 32.5 307 14-533 9-323 (330)
23 1fch_A Peroxisomal targeting s 99.9 5.3E-23 1.8E-27 209.8 26.8 301 81-574 38-355 (368)
24 4eqf_A PEX5-related protein; a 99.9 1.9E-22 6.6E-27 205.7 26.2 288 88-574 47-352 (365)
25 2ond_A Cleavage stimulation fa 99.9 8.1E-22 2.8E-26 196.5 28.1 243 210-550 7-276 (308)
26 1fch_A Peroxisomal targeting s 99.9 2.6E-22 9E-27 204.6 22.7 316 39-545 38-360 (368)
27 4g1t_A Interferon-induced prot 99.9 1.9E-20 6.3E-25 198.0 35.2 343 81-574 64-455 (472)
28 4eqf_A PEX5-related protein; a 99.9 2.5E-21 8.5E-26 197.5 22.0 303 47-544 48-356 (365)
29 2h6f_A Protein farnesyltransfe 99.9 1.1E-20 3.8E-25 192.9 24.5 257 94-562 89-366 (382)
30 3cv0_A Peroxisome targeting si 99.9 9.3E-20 3.2E-24 182.1 29.3 276 101-574 20-311 (327)
31 3cv0_A Peroxisome targeting si 99.9 2.1E-20 7.1E-25 186.8 22.1 284 80-549 33-320 (327)
32 2pl2_A Hypothetical conserved 99.8 7.1E-20 2.4E-24 172.5 20.3 163 381-574 35-210 (217)
33 2xm6_A Protein corresponding t 99.8 2.4E-17 8.2E-22 175.2 42.0 374 23-562 35-453 (490)
34 2h6f_A Protein farnesyltransfe 99.8 2.4E-19 8.2E-24 183.0 24.6 256 52-527 89-365 (382)
35 3u4t_A TPR repeat-containing p 99.8 2.3E-18 7.7E-23 167.5 23.6 263 101-563 2-269 (272)
36 2xm6_A Protein corresponding t 99.8 6.2E-16 2.1E-20 164.3 43.1 360 46-573 27-427 (490)
37 3uq3_A Heat shock protein STI1 99.8 1.6E-17 5.5E-22 159.6 24.7 247 101-558 4-256 (258)
38 3mkr_A Coatomer subunit epsilo 99.8 1.8E-17 6.1E-22 163.3 23.5 107 81-193 12-124 (291)
39 2pl2_A Hypothetical conserved 99.8 1.4E-17 4.7E-22 156.7 21.7 196 24-276 2-212 (217)
40 3sf4_A G-protein-signaling mod 99.8 5.7E-18 1.9E-22 174.5 20.2 168 387-568 189-366 (406)
41 3u4t_A TPR repeat-containing p 99.8 2.2E-17 7.7E-22 160.4 23.3 240 60-493 3-253 (272)
42 3vtx_A MAMA; tetratricopeptide 99.8 4.6E-17 1.6E-21 148.5 20.5 124 397-550 53-176 (184)
43 2q7f_A YRRB protein; TPR, prot 99.8 2.3E-17 8E-22 157.2 19.1 218 249-564 23-242 (243)
44 3vtx_A MAMA; tetratricopeptide 99.8 3.9E-17 1.3E-21 149.0 19.3 161 383-573 3-165 (184)
45 1xnf_A Lipoprotein NLPI; TPR, 99.7 2.1E-16 7.1E-21 153.6 23.8 126 79-283 16-145 (275)
46 3mkr_A Coatomer subunit epsilo 99.7 2.6E-16 8.9E-21 155.0 24.6 153 381-566 97-251 (291)
47 4gyw_A UDP-N-acetylglucosamine 99.7 2E-17 7E-22 181.8 17.9 165 379-573 3-169 (723)
48 3uq3_A Heat shock protein STI1 99.7 1.3E-16 4.3E-21 153.4 21.4 218 249-573 5-231 (258)
49 4abn_A Tetratricopeptide repea 99.7 7.6E-17 2.6E-21 170.3 21.2 172 377-576 129-319 (474)
50 2ho1_A Type 4 fimbrial biogene 99.7 7.6E-16 2.6E-20 147.8 25.4 211 245-553 33-247 (252)
51 3ro2_A PINS homolog, G-protein 99.7 1E-16 3.5E-21 160.0 19.4 148 388-549 186-337 (338)
52 3sf4_A G-protein-signaling mod 99.7 1.7E-16 6E-21 163.3 19.2 161 399-573 163-331 (406)
53 4a1s_A PINS, partner of inscut 99.7 3.8E-16 1.3E-20 161.6 21.0 300 100-549 46-377 (411)
54 2vq2_A PILW, putative fimbrial 99.7 4.1E-15 1.4E-19 139.5 25.5 211 249-555 8-222 (225)
55 1xnf_A Lipoprotein NLPI; TPR, 99.7 5.1E-15 1.8E-19 143.7 25.6 225 249-572 43-269 (275)
56 3ro2_A PINS homolog, G-protein 99.7 2.9E-16 9.8E-21 156.7 16.4 161 399-573 159-327 (338)
57 4ga2_A E3 SUMO-protein ligase 99.7 9E-17 3.1E-21 141.6 10.9 138 397-564 11-149 (150)
58 1ouv_A Conserved hypothetical 99.7 4.3E-14 1.5E-18 137.6 30.7 121 397-553 128-260 (273)
59 2q7f_A YRRB protein; TPR, prot 99.7 8.4E-16 2.9E-20 146.3 17.7 166 377-572 49-216 (243)
60 2ho1_A Type 4 fimbrial biogene 99.7 5.4E-15 1.8E-19 141.8 23.4 208 21-284 30-244 (252)
61 4a1s_A PINS, partner of inscut 99.7 1E-15 3.5E-20 158.3 19.2 276 80-493 60-375 (411)
62 2vq2_A PILW, putative fimbrial 99.7 1.5E-14 5E-19 135.7 25.2 207 22-284 3-217 (225)
63 4i17_A Hypothetical protein; T 99.7 2E-15 6.7E-20 142.8 18.1 162 382-565 4-169 (228)
64 4i17_A Hypothetical protein; T 99.7 9.6E-15 3.3E-19 138.0 21.5 156 397-560 56-225 (228)
65 4gyw_A UDP-N-acetylglucosamine 99.6 2.4E-15 8.3E-20 165.3 19.0 121 397-547 57-177 (723)
66 4abn_A Tetratricopeptide repea 99.6 3.1E-15 1.1E-19 157.9 18.7 165 377-572 94-281 (474)
67 3ulq_A Response regulator aspa 99.6 3.2E-14 1.1E-18 145.8 24.1 321 28-546 17-370 (383)
68 1xi4_A Clathrin heavy chain; a 99.6 1.7E-12 5.7E-17 145.8 38.6 338 80-563 1061-1415(1630)
69 3e4b_A ALGK; tetratricopeptide 99.6 1.1E-13 3.8E-18 145.1 26.8 353 80-560 15-401 (452)
70 3e4b_A ALGK; tetratricopeptide 99.6 2.8E-13 9.7E-18 142.0 29.0 375 38-547 15-424 (452)
71 1xi4_A Clathrin heavy chain; a 99.6 2.6E-12 8.7E-17 144.4 37.8 118 424-569 1251-1375(1630)
72 3as5_A MAMA; tetratricopeptide 99.6 1.9E-14 6.4E-19 130.3 16.2 159 385-573 8-168 (186)
73 3qky_A Outer membrane assembly 99.6 6.7E-14 2.3E-18 135.3 20.4 157 397-573 66-256 (261)
74 4gco_A Protein STI-1; structur 99.6 1.4E-14 4.7E-19 123.3 13.1 114 422-559 12-125 (126)
75 1ouv_A Conserved hypothetical 99.6 5.5E-13 1.9E-17 129.6 26.2 219 249-573 6-246 (273)
76 3ulq_A Response regulator aspa 99.6 1.3E-13 4.6E-18 141.2 22.3 158 396-573 197-363 (383)
77 3qky_A Outer membrane assembly 99.6 5.1E-14 1.7E-18 136.1 17.6 183 378-572 8-218 (261)
78 3as5_A MAMA; tetratricopeptide 99.6 1.9E-13 6.5E-18 123.6 19.5 140 381-550 38-179 (186)
79 2pzi_A Probable serine/threoni 99.6 1.6E-14 5.3E-19 159.4 14.6 164 379-573 427-600 (681)
80 2r5s_A Uncharacterized protein 99.5 2.2E-14 7.6E-19 129.8 11.7 162 381-573 2-168 (176)
81 2pzi_A Probable serine/threoni 99.5 2.8E-14 9.6E-19 157.4 14.9 164 378-573 387-558 (681)
82 1qqe_A Vesicular transport pro 99.5 3.9E-13 1.3E-17 132.3 21.2 149 397-560 132-285 (292)
83 3nf1_A KLC 1, kinesin light ch 99.5 7E-14 2.4E-18 138.0 15.7 264 97-547 22-310 (311)
84 4ga2_A E3 SUMO-protein ligase 99.5 6.2E-15 2.1E-19 129.7 6.1 117 429-569 3-119 (150)
85 2yhc_A BAMD, UPF0169 lipoprote 99.5 2.4E-13 8.2E-18 128.3 17.2 178 385-575 4-210 (225)
86 3nf1_A KLC 1, kinesin light ch 99.5 2.2E-13 7.6E-18 134.4 16.1 163 388-573 72-302 (311)
87 3qou_A Protein YBBN; thioredox 99.5 1.6E-13 5.3E-18 134.8 14.7 163 381-573 113-279 (287)
88 3urz_A Uncharacterized protein 99.5 4E-13 1.4E-17 125.1 15.9 162 353-558 18-199 (208)
89 3dra_A Protein farnesyltransfe 99.5 1.5E-11 5.2E-16 120.4 27.1 219 249-558 67-302 (306)
90 3dra_A Protein farnesyltransfe 99.5 4.5E-12 1.5E-16 124.2 22.5 170 377-576 95-285 (306)
91 1hz4_A MALT regulatory protein 99.5 3.1E-11 1E-15 122.9 29.7 159 396-571 148-315 (373)
92 3gyz_A Chaperone protein IPGC; 99.5 3.1E-14 1.1E-18 124.9 5.6 104 422-549 35-138 (151)
93 3q15_A PSP28, response regulat 99.5 2.1E-11 7.2E-16 124.6 27.6 126 397-545 236-366 (378)
94 3gyz_A Chaperone protein IPGC; 99.5 2.4E-13 8.2E-18 119.2 10.7 109 375-493 26-136 (151)
95 3q15_A PSP28, response regulat 99.5 4.2E-12 1.5E-16 129.8 21.8 165 389-573 186-360 (378)
96 2vgx_A Chaperone SYCD; alterna 99.5 2.2E-13 7.6E-18 119.3 10.2 125 404-558 8-132 (148)
97 1qqe_A Vesicular transport pro 99.4 7.2E-13 2.5E-17 130.4 14.7 174 386-572 78-263 (292)
98 3urz_A Uncharacterized protein 99.4 7.1E-13 2.4E-17 123.4 13.3 157 384-571 3-179 (208)
99 2xcb_A PCRH, regulatory protei 99.4 4.1E-13 1.4E-17 116.7 10.8 131 404-564 5-135 (142)
100 2vsy_A XCC0866; transferase, g 99.4 9.4E-13 3.2E-17 142.4 15.7 151 376-556 14-169 (568)
101 4h7y_A Dual specificity protei 99.4 3.8E-13 1.3E-17 112.1 9.5 110 379-493 7-126 (161)
102 1hz4_A MALT regulatory protein 99.4 2E-11 6.9E-16 124.3 24.4 132 397-546 188-324 (373)
103 1a17_A Serine/threonine protei 99.4 2E-12 6.8E-17 114.9 14.8 131 422-576 12-144 (166)
104 1b89_A Protein (clathrin heavy 99.4 3.7E-13 1.3E-17 136.3 10.9 306 81-560 16-339 (449)
105 2vsy_A XCC0866; transferase, g 99.4 1.6E-12 5.4E-17 140.6 16.6 145 397-571 3-150 (568)
106 3edt_B KLC 2, kinesin light ch 99.4 1.7E-12 5.8E-17 125.9 14.6 170 381-573 39-276 (283)
107 4gco_A Protein STI-1; structur 99.4 1.5E-12 5.2E-17 110.5 11.9 106 378-493 6-113 (126)
108 3upv_A Heat shock protein STI1 99.4 3.9E-12 1.3E-16 107.7 14.4 116 422-561 3-124 (126)
109 2yhc_A BAMD, UPF0169 lipoprote 99.4 1.4E-11 4.9E-16 116.0 19.8 197 249-549 4-218 (225)
110 2lni_A Stress-induced-phosphop 99.4 4.8E-12 1.7E-16 107.6 14.7 120 421-564 14-133 (133)
111 2vyi_A SGTA protein; chaperone 99.4 5.3E-12 1.8E-16 106.8 14.9 121 422-566 11-131 (131)
112 2fo7_A Synthetic consensus TPR 99.4 4.2E-12 1.4E-16 107.9 14.3 121 425-569 3-123 (136)
113 1b89_A Protein (clathrin heavy 99.4 2.3E-12 7.8E-17 130.5 14.4 205 27-281 32-239 (449)
114 2fo7_A Synthetic consensus TPR 99.4 1.3E-11 4.3E-16 104.9 16.1 133 386-548 2-136 (136)
115 1p5q_A FKBP52, FK506-binding p 99.4 7.1E-13 2.4E-17 133.2 9.1 147 397-569 127-284 (336)
116 2r5s_A Uncharacterized protein 99.4 2.3E-12 7.7E-17 116.4 11.5 151 80-278 18-173 (176)
117 2e2e_A Formate-dependent nitri 99.4 6.1E-12 2.1E-16 113.5 14.0 129 397-555 24-155 (177)
118 3sz7_A HSC70 cochaperone (SGT) 99.4 7E-12 2.4E-16 111.7 14.0 114 422-559 10-123 (164)
119 3edt_B KLC 2, kinesin light ch 99.4 3.2E-11 1.1E-15 116.8 19.1 213 249-545 43-282 (283)
120 1elw_A TPR1-domain of HOP; HOP 99.4 1.7E-11 5.8E-16 101.6 14.7 115 422-560 3-117 (118)
121 2vgx_A Chaperone SYCD; alterna 99.3 1.2E-12 4E-17 114.7 7.3 107 442-572 6-112 (148)
122 4h7y_A Dual specificity protei 99.3 1E-11 3.6E-16 103.5 12.3 107 20-135 6-127 (161)
123 1na0_A Designed protein CTPR3; 99.3 2.6E-11 9E-16 101.5 15.2 118 422-563 8-125 (125)
124 1hxi_A PEX5, peroxisome target 99.3 7.2E-12 2.5E-16 105.5 10.8 102 425-550 19-120 (121)
125 4gcn_A Protein STI-1; structur 99.3 2.4E-11 8.2E-16 103.2 13.8 117 422-558 7-125 (127)
126 3q49_B STIP1 homology and U bo 99.3 2.7E-11 9.3E-16 103.9 14.2 122 422-567 8-134 (137)
127 2c2l_A CHIP, carboxy terminus 99.3 1E-11 3.5E-16 121.4 12.8 176 382-569 1-190 (281)
128 3qou_A Protein YBBN; thioredox 99.3 3.2E-11 1.1E-15 118.2 14.4 172 15-197 104-282 (287)
129 1hh8_A P67PHOX, NCF-2, neutrop 99.3 9.6E-11 3.3E-15 108.8 16.6 146 388-553 9-159 (213)
130 2xcb_A PCRH, regulatory protei 99.3 2.1E-11 7.3E-16 105.7 10.8 107 377-493 10-118 (142)
131 1p5q_A FKBP52, FK506-binding p 99.3 1.8E-11 6.2E-16 122.8 11.6 146 377-546 139-296 (336)
132 3rkv_A Putative peptidylprolyl 99.3 4.6E-11 1.6E-15 106.0 12.8 124 422-569 10-152 (162)
133 2dba_A Smooth muscle cell asso 99.3 6.6E-11 2.3E-15 102.6 13.4 120 422-562 27-146 (148)
134 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 7.7E-12 2.6E-16 131.1 8.3 147 397-569 248-405 (457)
135 2hr2_A Hypothetical protein; a 99.2 3.5E-11 1.2E-15 104.4 10.1 118 423-560 11-147 (159)
136 1dce_A Protein (RAB geranylger 99.2 1.3E-10 4.5E-15 124.5 16.5 161 377-567 55-244 (567)
137 1elr_A TPR2A-domain of HOP; HO 99.2 1.5E-10 5.1E-15 97.7 13.5 126 422-565 3-128 (131)
138 1a17_A Serine/threonine protei 99.2 1.9E-10 6.4E-15 101.9 14.3 131 385-545 13-147 (166)
139 2e2e_A Formate-dependent nitri 99.2 1.2E-10 4.1E-15 104.9 12.6 124 39-173 23-149 (177)
140 3rjv_A Putative SEL1 repeat pr 99.2 6.5E-10 2.2E-14 103.5 18.0 158 382-573 15-192 (212)
141 2fbn_A 70 kDa peptidylprolyl i 99.2 2.6E-10 9.1E-15 104.8 15.1 128 422-569 37-176 (198)
142 2ifu_A Gamma-SNAP; membrane fu 99.2 3.4E-10 1.2E-14 112.0 16.7 168 385-569 76-252 (307)
143 3q7a_A Farnesyltransferase alp 99.2 9.6E-10 3.3E-14 108.8 19.4 172 246-494 51-241 (349)
144 3upv_A Heat shock protein STI1 99.2 1.9E-10 6.7E-15 97.1 12.6 101 382-492 1-103 (126)
145 2lni_A Stress-induced-phosphop 99.2 3.2E-10 1.1E-14 96.2 13.9 123 378-530 9-133 (133)
146 2vyi_A SGTA protein; chaperone 99.2 1.7E-10 5.8E-15 97.3 11.9 123 379-531 6-130 (131)
147 1wao_1 Serine/threonine protei 99.2 2.3E-11 7.9E-16 128.1 7.8 125 425-573 8-134 (477)
148 1hh8_A P67PHOX, NCF-2, neutrop 99.2 2.1E-10 7.1E-15 106.5 13.5 120 424-570 7-142 (213)
149 2xev_A YBGF; tetratricopeptide 99.2 3.5E-10 1.2E-14 95.7 12.9 121 425-563 4-124 (129)
150 1ihg_A Cyclophilin 40; ppiase 99.2 3E-10 1E-14 115.3 14.4 125 423-571 223-363 (370)
151 3dss_A Geranylgeranyl transfer 99.2 1E-09 3.4E-14 108.1 17.6 176 377-584 56-278 (331)
152 4f3v_A ESX-1 secretion system 99.1 3.4E-10 1.1E-14 108.4 13.4 182 354-571 21-230 (282)
153 2kck_A TPR repeat; tetratricop 99.1 2.2E-10 7.5E-15 93.8 10.4 106 422-549 5-111 (112)
154 3q7a_A Farnesyltransferase alp 99.1 1.2E-09 4.1E-14 108.1 17.4 159 377-565 80-258 (349)
155 3dss_A Geranylgeranyl transfer 99.1 1.3E-08 4.4E-13 100.2 24.7 232 39-283 42-309 (331)
156 2ifu_A Gamma-SNAP; membrane fu 99.1 2.2E-10 7.5E-15 113.4 12.1 163 396-573 49-219 (307)
157 3k9i_A BH0479 protein; putativ 99.1 7.5E-11 2.6E-15 98.4 7.4 96 436-555 3-101 (117)
158 2c2l_A CHIP, carboxy terminus 99.1 7.4E-10 2.5E-14 108.0 15.0 104 422-549 3-106 (281)
159 2if4_A ATFKBP42; FKBP-like, al 99.1 1E-10 3.4E-15 117.5 8.6 146 381-550 175-334 (338)
160 1zu2_A Mitochondrial import re 99.1 1.5E-10 5.2E-15 100.1 8.0 100 435-558 14-134 (158)
161 2qfc_A PLCR protein; TPR, HTH, 99.1 7.7E-10 2.6E-14 108.6 13.8 174 383-572 73-260 (293)
162 1elw_A TPR1-domain of HOP; HOP 99.1 2.4E-09 8.3E-14 88.3 14.6 100 384-493 3-104 (118)
163 3rjv_A Putative SEL1 repeat pr 99.1 2E-08 7E-13 93.3 22.4 125 398-557 68-208 (212)
164 1na0_A Designed protein CTPR3; 99.1 2.3E-09 8E-14 89.3 14.6 119 381-529 4-125 (125)
165 2qfc_A PLCR protein; TPR, HTH, 99.1 4.5E-09 1.5E-13 103.1 18.9 135 397-545 129-267 (293)
166 3sz7_A HSC70 cochaperone (SGT) 99.1 5.7E-10 1.9E-14 99.1 11.0 105 379-493 5-111 (164)
167 3q49_B STIP1 homology and U bo 99.1 1.1E-09 3.8E-14 93.7 12.2 104 380-493 4-109 (137)
168 4f3v_A ESX-1 secretion system 99.1 2.4E-09 8.1E-14 102.5 15.2 143 386-557 103-249 (282)
169 1hxi_A PEX5, peroxisome target 99.1 9.5E-10 3.2E-14 92.3 11.1 98 386-493 18-117 (121)
170 2kck_A TPR repeat; tetratricop 99.1 1.1E-09 3.7E-14 89.6 11.3 103 381-493 2-109 (112)
171 3u3w_A Transcriptional activat 99.0 5.5E-09 1.9E-13 102.4 16.9 164 396-573 88-261 (293)
172 4gcn_A Protein STI-1; structur 99.0 1.6E-09 5.5E-14 91.7 11.0 103 385-493 8-115 (127)
173 2fbn_A 70 kDa peptidylprolyl i 99.0 1.4E-09 4.8E-14 99.9 11.4 137 383-543 36-185 (198)
174 1wao_1 Serine/threonine protei 99.0 1.2E-10 4.2E-15 122.5 4.2 122 397-548 20-154 (477)
175 2dba_A Smooth muscle cell asso 99.0 2.8E-09 9.5E-14 92.2 12.1 121 18-148 19-143 (148)
176 1kt0_A FKBP51, 51 kDa FK506-bi 99.0 1.6E-09 5.6E-14 113.3 12.4 143 377-543 260-414 (457)
177 2if4_A ATFKBP42; FKBP-like, al 99.0 7.3E-10 2.5E-14 111.1 8.0 131 422-572 178-322 (338)
178 3rkv_A Putative peptidylprolyl 99.0 3.9E-09 1.3E-13 93.4 11.7 105 385-493 11-129 (162)
179 1elr_A TPR2A-domain of HOP; HO 98.9 4.2E-09 1.4E-13 88.7 10.4 105 383-493 2-111 (131)
180 2hr2_A Hypothetical protein; a 98.9 3.4E-09 1.2E-13 91.9 9.8 105 461-573 11-126 (159)
181 3gw4_A Uncharacterized protein 98.9 1E-08 3.5E-13 93.9 13.7 155 381-549 21-181 (203)
182 3gw4_A Uncharacterized protein 98.9 9.5E-09 3.2E-13 94.1 12.9 158 396-572 5-170 (203)
183 2kat_A Uncharacterized protein 98.9 1E-08 3.4E-13 84.9 11.7 100 441-564 3-104 (115)
184 1dce_A Protein (RAB geranylger 98.9 1.3E-08 4.3E-13 109.1 15.4 156 399-584 45-234 (567)
185 3k9i_A BH0479 protein; putativ 98.9 2.6E-09 8.9E-14 88.9 7.6 88 397-493 4-93 (117)
186 2xev_A YBGF; tetratricopeptide 98.9 2.3E-08 7.9E-13 84.2 12.8 99 388-493 5-108 (129)
187 3u3w_A Transcriptional activat 98.9 6.4E-08 2.2E-12 94.8 17.8 166 354-545 90-267 (293)
188 2l6j_A TPR repeat-containing p 98.9 1.1E-08 3.6E-13 83.7 10.2 95 462-576 5-105 (111)
189 1zu2_A Mitochondrial import re 98.9 1.6E-08 5.5E-13 87.4 11.5 97 39-135 15-124 (158)
190 3ro3_A PINS homolog, G-protein 98.8 9.9E-09 3.4E-13 89.7 10.0 149 386-548 10-162 (164)
191 3ro3_A PINS homolog, G-protein 98.8 2.5E-08 8.6E-13 87.1 12.2 138 422-573 8-153 (164)
192 1ihg_A Cyclophilin 40; ppiase 98.8 2E-08 6.8E-13 101.8 12.5 128 385-536 223-362 (370)
193 1na3_A Designed protein CTPR2; 98.8 2.1E-08 7.3E-13 78.6 9.5 82 462-563 10-91 (91)
194 3mv2_B Coatomer subunit epsilo 98.8 2.8E-07 9.5E-12 89.4 18.2 161 378-564 93-270 (310)
195 2l6j_A TPR repeat-containing p 98.8 8.3E-09 2.8E-13 84.4 5.8 101 422-540 3-103 (111)
196 2kat_A Uncharacterized protein 98.7 5E-08 1.7E-12 80.6 10.4 84 400-493 2-85 (115)
197 3mv2_B Coatomer subunit epsilo 98.7 1E-06 3.6E-11 85.3 19.6 192 45-283 85-287 (310)
198 2kc7_A BFR218_protein; tetratr 98.7 2.5E-08 8.6E-13 79.8 5.7 91 427-549 4-95 (99)
199 3ma5_A Tetratricopeptide repea 98.7 9E-08 3.1E-12 77.0 9.0 66 462-547 8-73 (100)
200 1na3_A Designed protein CTPR2; 98.6 2.5E-07 8.4E-12 72.3 10.6 84 422-529 8-91 (91)
201 4b4t_Q 26S proteasome regulato 98.6 2.2E-06 7.4E-11 88.5 18.6 142 391-545 101-246 (434)
202 4b4t_Q 26S proteasome regulato 98.5 7.2E-06 2.5E-10 84.6 22.0 188 249-492 55-247 (434)
203 3ly7_A Transcriptional activat 98.5 1.5E-06 5E-11 85.8 15.3 155 14-173 181-344 (372)
204 3ma5_A Tetratricopeptide repea 98.5 3.7E-07 1.3E-11 73.3 9.1 68 422-493 6-73 (100)
205 3ly7_A Transcriptional activat 98.4 1.7E-06 5.9E-11 85.3 13.3 142 378-550 187-345 (372)
206 2kc7_A BFR218_protein; tetratr 98.4 6.1E-07 2.1E-11 71.6 8.3 70 465-554 4-74 (99)
207 3u64_A Protein TP_0956; tetrat 98.4 2.8E-06 9.5E-11 80.3 13.5 158 377-569 58-260 (301)
208 3u64_A Protein TP_0956; tetrat 98.4 8.3E-07 2.8E-11 83.9 9.7 88 438-548 178-273 (301)
209 1klx_A Cysteine rich protein B 98.4 6.3E-06 2.2E-10 70.4 13.5 121 397-557 9-137 (138)
210 3bee_A Putative YFRE protein; 98.3 3.3E-06 1.1E-10 66.5 8.4 73 453-549 2-77 (93)
211 3n71_A Histone lysine methyltr 98.2 1.7E-05 6E-10 82.7 15.5 126 432-573 318-459 (490)
212 3bee_A Putative YFRE protein; 98.0 2E-05 6.7E-10 62.0 8.9 68 422-493 5-75 (93)
213 1klx_A Cysteine rich protein B 98.0 4.3E-05 1.5E-09 65.1 11.3 106 436-573 8-121 (138)
214 1pc2_A Mitochondria fission pr 98.0 5.3E-05 1.8E-09 64.6 11.5 98 438-558 13-114 (152)
215 3n71_A Histone lysine methyltr 98.0 5.5E-05 1.9E-09 79.0 13.6 142 396-552 322-472 (490)
216 2v5f_A Prolyl 4-hydroxylase su 97.9 9.4E-05 3.2E-09 59.5 10.6 86 462-560 6-91 (104)
217 3qww_A SET and MYND domain-con 97.8 0.00024 8.2E-09 72.9 13.8 103 435-553 310-425 (433)
218 1pc2_A Mitochondria fission pr 97.7 0.00028 9.6E-09 60.1 10.9 94 79-174 9-106 (152)
219 4a1g_A Mitotic checkpoint seri 97.7 0.00047 1.6E-08 58.5 11.9 121 14-150 11-148 (152)
220 3esl_A Checkpoint serine/threo 97.6 0.0017 6E-08 57.6 15.2 128 13-150 12-162 (202)
221 4g26_A Pentatricopeptide repea 97.6 0.0015 5.2E-08 68.5 17.6 141 397-569 40-195 (501)
222 2wvi_A Mitotic checkpoint seri 97.6 0.00093 3.2E-08 57.5 13.0 123 13-150 3-143 (164)
223 3qwp_A SET and MYND domain-con 97.5 0.0013 4.3E-08 67.6 14.9 109 435-559 299-423 (429)
224 3qww_A SET and MYND domain-con 97.5 0.00041 1.4E-08 71.1 10.9 92 397-491 312-412 (433)
225 4g26_A Pentatricopeptide repea 97.4 0.0076 2.6E-07 63.1 19.9 166 352-561 39-222 (501)
226 2v5f_A Prolyl 4-hydroxylase su 97.4 0.00078 2.7E-08 54.0 9.5 71 423-493 5-78 (104)
227 4aez_C MAD3, mitotic spindle c 97.3 0.0035 1.2E-07 56.6 13.2 122 13-149 55-196 (223)
228 3esl_A Checkpoint serine/threo 97.3 0.0071 2.4E-07 53.7 14.6 124 42-172 8-148 (202)
229 4a1g_A Mitotic checkpoint seri 97.2 0.0041 1.4E-07 52.7 11.7 119 42-173 6-135 (152)
230 1nzn_A CGI-135 protein, fissio 97.1 0.0089 3.1E-07 48.9 12.6 99 437-558 15-117 (126)
231 3qwp_A SET and MYND domain-con 97.1 0.0022 7.4E-08 65.8 10.8 92 397-491 301-401 (429)
232 2wvi_A Mitotic checkpoint seri 96.6 0.015 5.2E-07 50.0 10.6 115 47-173 4-130 (164)
233 4aez_C MAD3, mitotic spindle c 96.5 0.022 7.4E-07 51.5 10.8 120 42-172 51-183 (223)
234 4gns_B Protein CSD3, chitin bi 95.9 0.11 3.9E-06 56.3 15.0 135 435-574 260-399 (754)
235 1nzn_A CGI-135 protein, fissio 95.9 0.079 2.7E-06 43.3 10.5 91 82-174 15-109 (126)
236 3txn_A 26S proteasome regulato 95.0 1.3 4.3E-05 44.2 18.1 101 390-490 104-210 (394)
237 3ffl_A Anaphase-promoting comp 94.4 0.13 4.6E-06 44.0 7.8 131 428-559 25-165 (167)
238 3o48_A Mitochondria fission 1 94.3 0.73 2.5E-05 37.8 11.7 33 521-553 84-116 (134)
239 3ffl_A Anaphase-promoting comp 93.9 0.27 9.3E-06 42.1 8.7 97 464-571 23-144 (167)
240 1y8m_A FIS1; mitochondria, unk 93.7 0.57 1.9E-05 38.9 10.1 75 462-555 40-117 (144)
241 3mkq_A Coatomer beta'-subunit; 92.4 2.1 7.3E-05 47.2 16.0 85 99-196 678-762 (814)
242 3o48_A Mitochondria fission 1 92.1 1.7 5.9E-05 35.6 10.7 92 80-174 19-113 (134)
243 1y8m_A FIS1; mitochondria, unk 91.4 2.8 9.4E-05 34.8 11.3 92 80-174 18-112 (144)
244 4gns_B Protein CSD3, chitin bi 90.4 0.78 2.7E-05 49.9 9.2 108 15-134 271-399 (754)
245 1zbp_A Hypothetical protein VP 89.4 3 0.0001 38.8 11.0 111 434-550 8-135 (273)
246 2ff4_A Probable regulatory pro 88.7 3.5 0.00012 41.2 12.0 98 39-165 128-231 (388)
247 3spa_A Mtrpol, DNA-directed RN 88.5 3.5 0.00012 46.1 12.5 94 425-544 129-230 (1134)
248 3mkq_A Coatomer beta'-subunit; 88.0 7.4 0.00025 42.7 15.5 43 396-449 665-707 (814)
249 3mkq_B Coatomer subunit alpha; 88.0 11 0.00038 32.6 13.0 44 435-487 17-60 (177)
250 3txn_A 26S proteasome regulato 86.6 7.5 0.00026 38.7 12.7 101 427-545 103-211 (394)
251 4b4t_R RPN7, 26S proteasome re 86.5 3.2 0.00011 42.1 10.4 104 386-492 132-239 (429)
252 2ff4_A Probable regulatory pro 86.0 4.7 0.00016 40.2 11.2 62 424-489 172-233 (388)
253 3mkq_B Coatomer subunit alpha; 84.7 9.6 0.00033 33.0 10.9 99 80-196 17-115 (177)
254 4b4t_P 26S proteasome regulato 84.5 16 0.00054 37.1 14.5 103 423-543 137-246 (445)
255 3spa_A Mtrpol, DNA-directed RN 84.4 4.9 0.00017 44.9 10.9 86 463-569 129-221 (1134)
256 1zbp_A Hypothetical protein VP 82.1 6.7 0.00023 36.4 9.3 62 471-552 7-68 (273)
257 1ya0_A SMG-7 transcript varian 81.4 2.6 8.9E-05 43.5 7.1 54 516-569 153-206 (497)
258 4b4t_R RPN7, 26S proteasome re 81.1 4.8 0.00016 40.8 8.9 108 423-545 131-238 (429)
259 1ya0_A SMG-7 transcript varian 80.5 6.8 0.00023 40.4 9.8 78 464-561 155-232 (497)
260 4b4t_P 26S proteasome regulato 78.9 13 0.00044 37.8 11.3 103 388-490 140-247 (445)
261 4b4t_S RPN3, 26S proteasome re 74.9 13 0.00044 38.2 9.7 113 422-549 180-304 (523)
262 1wy6_A Hypothetical protein ST 74.0 36 0.0012 28.0 10.1 81 397-491 75-155 (172)
263 4fhn_B Nucleoporin NUP120; pro 70.2 20 0.00069 41.3 11.3 130 429-569 818-958 (1139)
264 4b4t_S RPN3, 26S proteasome re 69.3 17 0.00058 37.3 9.1 70 422-493 230-302 (523)
265 1qsa_A Protein (soluble lytic 65.3 1.4E+02 0.0048 31.5 29.9 118 396-543 227-347 (618)
266 3ax2_A Mitochondrial import re 59.5 16 0.00053 26.4 4.8 38 252-289 20-57 (73)
267 3kae_A CDC27, possible protein 56.2 96 0.0033 26.5 16.3 98 384-492 34-145 (242)
268 3kae_A CDC27, possible protein 51.3 1.2E+02 0.004 26.0 11.2 99 433-548 43-147 (242)
269 1om2_A Protein (mitochondrial 47.7 27 0.00093 26.5 4.6 38 252-289 23-60 (95)
270 2o8p_A 14-3-3 domain containin 46.6 61 0.0021 29.1 7.6 53 397-451 139-196 (227)
271 1wy6_A Hypothetical protein ST 44.8 55 0.0019 27.0 6.2 56 109-167 98-153 (172)
272 4fhn_B Nucleoporin NUP120; pro 42.7 83 0.0029 36.1 10.1 107 380-486 837-963 (1139)
273 3ax2_A Mitochondrial import re 41.8 62 0.0021 23.2 5.6 30 106-135 21-50 (73)
274 4gq2_M Nucleoporin NUP120; bet 40.9 3.8E+02 0.013 29.9 14.9 123 429-562 816-949 (950)
275 2ijq_A Hypothetical protein; s 40.0 1.2E+02 0.0043 25.5 8.1 56 433-489 42-103 (161)
276 2w2u_A Hypothetical P60 katani 39.3 18 0.00062 26.8 2.5 17 527-543 31-47 (83)
277 2v6y_A AAA family ATPase, P60 37.1 20 0.00069 26.5 2.5 17 527-543 23-39 (83)
278 2ijq_A Hypothetical protein; s 35.4 99 0.0034 26.1 6.8 41 28-68 34-77 (161)
279 3iqu_A 14-3-3 protein sigma; s 34.6 1.2E+02 0.0042 27.3 7.7 50 399-450 149-203 (236)
280 1o9d_A 14-3-3-like protein C; 30.1 1.2E+02 0.0042 27.8 7.0 50 399-450 151-205 (260)
281 2bn5_A PSI; nuclear protein, s 29.9 83 0.0028 18.4 3.6 26 516-541 3-28 (33)
282 3bu8_A Telomeric repeat-bindin 27.9 52 0.0018 29.1 3.9 20 42-61 88-107 (235)
283 2br9_A 14-3-3E, 14-3-3 protein 26.8 1.1E+02 0.0038 27.6 6.1 51 399-451 146-201 (234)
284 2cqq_A RSGI RUH-037, DNAJ homo 25.3 1.4E+02 0.0048 21.2 5.2 42 234-277 16-57 (72)
285 2npm_A 14-3-3 domain containin 24.7 1.3E+02 0.0044 27.7 6.1 51 399-451 172-226 (260)
286 3uzd_A 14-3-3 protein gamma; s 24.6 1.3E+02 0.0043 27.5 6.0 50 399-450 147-201 (248)
287 1wfd_A Hypothetical protein 15 23.8 46 0.0016 25.1 2.5 17 527-543 27-43 (93)
288 3ubw_A 14-3-3E, 14-3-3 protein 23.0 1.4E+02 0.0049 27.3 6.0 50 399-450 172-226 (261)
289 2crb_A Nuclear receptor bindin 21.8 1.3E+02 0.0044 22.6 4.4 29 515-543 15-43 (97)
290 2o8p_A 14-3-3 domain containin 20.7 2.4E+02 0.0081 25.3 6.9 54 435-489 137-196 (227)
291 1f3k_A Omega-conotoxin txvii; 20.1 26 0.00089 18.9 0.3 8 586-593 11-18 (26)
No 1
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=100.00 E-value=2.3e-37 Score=336.07 Aligned_cols=450 Identities=12% Similarity=0.151 Sum_probs=341.1
Q ss_pred CCCcchHhHHHHhhCCCCHHHHHHHHHHHH-cCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchh---H
Q 007648 9 PSEDDLLYEEELLRNPFSLKLWWRYLVAKR-EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPE---Y 84 (594)
Q Consensus 9 ~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~---~ 84 (594)
.++....||+.|.+||.|.+.|.+|+++.. .++++.++.+|+++|..+|.+..+|..|+.++.. .++ +
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~--------~~~~~~~ 119 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFD--------KMEELDA 119 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT--------C--CCCH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHh--------hCCcchH
Confidence 344455899999999999999999999875 6899999999999999999999999999999843 355 9
Q ss_pred HHHHHHHHHHHHhcC--CChHHHHHHHHHHHhcccH--------HHHHHHHHHHHHhCCC-C-CHHHHHHHHHHHHHHc-
Q 007648 85 ETLNNTFERALVTMH--KMPRIWIMYLETLTSQKFI--------TKARRTFDRALCALPV-T-QHDRIWEIYLRFVEQE- 151 (594)
Q Consensus 85 ~~A~~~~~~al~~~P--~~~~lw~~y~~~~~~~~~~--------~~A~~~~~ral~~~p~-~-~~~~~w~~~~~~~~~~- 151 (594)
+.++.+|+||+...| .++.+|..|+.+..+.++. +.++++|++|+...+. + .++.+|..|+.|+...
T Consensus 120 ~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~ 199 (679)
T 4e6h_A 120 AVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWK 199 (679)
T ss_dssp HHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcc
Confidence 999999999999994 7899999999998876542 5577999999987654 2 3478999999997632
Q ss_pred --------CCchHHHHHHHHHHHhhCCCCHH----HHHHHHHh-------------cccHHHHHHHHHHhh------cC-
Q 007648 152 --------GIPIETSLRVYRRYLKYDPSHIE----DFIEFLVK-------------SKLWQEAAERLASVL------ND- 199 (594)
Q Consensus 152 --------~~~~~~a~~~~~~~l~~~p~~~~----~~~~~~~~-------------~~~~~~a~~~~~~~~------~~- 199 (594)
+.. +.++++|++++.+...+.+ .|..+... ..+|+.|...+...- ..
T Consensus 200 ~~~~~eeq~~~-~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 200 PVNKFEEQQRV-QYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp CCSHHHHHHHH-HHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred ccCcHHHHhHH-HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhc
Confidence 233 7899999999975333333 23333222 234555666655422 10
Q ss_pred -ccc--------ccc---cccchHHHHHHHHHHHhhccccccc----CcHHHHHHHHHhhccchhHHHHHHHHHHHHHhc
Q 007648 200 -DQF--------YSI---KGKTKHRLWLELCDLLTTHATEISG----LNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRE 263 (594)
Q Consensus 200 -~~~--------~~~---~~~~~~~~w~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g 263 (594)
|.. .+. .......+|..|+.|++.+|..++. ..+..++++++..+|.. +++|+.++.++...|
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~-~~lW~~ya~~~~~~~ 357 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFA-PEIWFNMANYQGEKN 357 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHS
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHhcC
Confidence 110 000 0112468999999999988743221 12346789999999975 899999999999999
Q ss_pred cHHHHH-HHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHh
Q 007648 264 LFEKAR-DIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKK 342 (594)
Q Consensus 264 ~~~~A~-~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (594)
+.+.|+ ++|++|+..+|... .+|..++.+++...
T Consensus 358 ~~~~a~r~il~rAi~~~P~s~---~Lwl~~a~~ee~~~------------------------------------------ 392 (679)
T 4e6h_A 358 TDSTVITKYLKLGQQCIPNSA---VLAFSLSEQYELNT------------------------------------------ 392 (679)
T ss_dssp CCTTHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTT------------------------------------------
T ss_pred cHHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhC------------------------------------------
Confidence 999996 99999999999765 68888998887521
Q ss_pred hhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCC-----------ChHHHHHHHHHhc--CCchhHHHHHHHH
Q 007648 343 VLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPH-----------NVEQWHRRVKIFE--GNPTKQILTYTEA 409 (594)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~-----------~~~~~~~~~~~~~--~~~~~a~~~y~~A 409 (594)
.+..++..|++++...+.... ......|. ...+|..++.++. ++.+.|+.+|++|
T Consensus 393 -----------~~e~aR~iyek~l~~l~~~~~-~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 393 -----------KIPEIETTILSCIDRIHLDLA-ALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHH-HHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred -----------CHHHHHHHHHHHHHHHHHHhh-hhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 122234445554321100000 00011243 4568999999875 7899999999999
Q ss_pred HhccCCCcccCCchHHHHHHHHHHHhcC-CHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 007648 410 VRTVDPMKAVGKPHTLWVAFAKLYETYK-DIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRAT 488 (594)
Q Consensus 410 i~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 488 (594)
++..++. ...+|+.+|.++.+.+ +.++|+++|+++++..|+++ .+|..|++++...|+.+.||.+|++|+
T Consensus 461 ~~~~~~~-----~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~----~~w~~y~~fe~~~~~~~~AR~lferal 531 (679)
T 4e6h_A 461 RRLKKLV-----TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDG----EYINKYLDFLIYVNEESQVKSLFESSI 531 (679)
T ss_dssp HHTGGGS-----CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHhcCCC-----ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCch----HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9852321 4689999999998765 59999999999999999999 999999999999999999999999999
Q ss_pred cCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHH
Q 007648 489 AEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI 551 (594)
Q Consensus 489 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 551 (594)
...|+.. +...+|..|+++|.+.|+.+.++++++|+++..|+++.+
T Consensus 532 ~~~~~~~-----------------~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 532 DKISDSH-----------------LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp TTSSSTT-----------------HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred HhcCCHH-----------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 9988200 145899999999999999999999999999999998753
No 2
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=100.00 E-value=7.6e-37 Score=329.43 Aligned_cols=428 Identities=17% Similarity=0.274 Sum_probs=336.7
Q ss_pred hHHHHhhCCCCHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHH
Q 007648 16 YEEELLRNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERAL 95 (594)
Q Consensus 16 ~e~~l~~~P~~~~~w~~~~~~~~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 95 (594)
+|++|..+|.+.+.|..+++....|++++|+.+|+++++.+|.++.+|..|+.++.. .|++++|+.+|++|+
T Consensus 2 le~al~~~P~~~~~w~~l~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~--------~~~~~~a~~~~~ral 73 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIK--------AKNYDKVEKLFQRCL 73 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--------TTCHHHHHHHHHHHT
T ss_pred hhhHhhhCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHh--------cCCHHHHHHHHHHHH
Confidence 789999999999999999997668999999999999999999999999999999844 488999999999999
Q ss_pred HhcCCChHHHHHHHHHHHh-cccHHHHH----HHHHHHHHhCCCC-CHHHHHHHHHHHHHH---------cCCchHHHHH
Q 007648 96 VTMHKMPRIWIMYLETLTS-QKFITKAR----RTFDRALCALPVT-QHDRIWEIYLRFVEQ---------EGIPIETSLR 160 (594)
Q Consensus 96 ~~~P~~~~lw~~y~~~~~~-~~~~~~A~----~~~~ral~~~p~~-~~~~~w~~~~~~~~~---------~~~~~~~a~~ 160 (594)
..+| ++.+|..|+.+... .|+++.|+ .+|++++...+.+ .+..+|..++.++.. .|+. ++|++
T Consensus 74 ~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-~~a~~ 151 (530)
T 2ooe_A 74 MKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI-TAVRR 151 (530)
T ss_dssp TTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHH-HHHHH
T ss_pred hcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHH-HHHHH
Confidence 9999 78999999987754 56665554 5999999875521 237999999999875 5667 89999
Q ss_pred HHHHHHhhCCCCH-H----HHHHHH-------------HhcccHHHHHHHHHH------hhcCccc-ccccc----cchH
Q 007648 161 VYRRYLKYDPSHI-E----DFIEFL-------------VKSKLWQEAAERLAS------VLNDDQF-YSIKG----KTKH 211 (594)
Q Consensus 161 ~~~~~l~~~p~~~-~----~~~~~~-------------~~~~~~~~a~~~~~~------~~~~~~~-~~~~~----~~~~ 211 (594)
+|+++++ .|.+. . .|..+. ...+++.+|+..|+. .++.... ..+.+ ....
T Consensus 152 ~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 152 VYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 9999999 57653 2 222322 134678888877776 3321000 00000 0235
Q ss_pred HHHHHHHHHHhhcccccccC-----cHHHHHHHHHhhccchhHHHHHHHHHHHHH-------hccHH-------HHHHHH
Q 007648 212 RLWLELCDLLTTHATEISGL-----NVDAIIRGGIRKFTDEVGRLWTSLADYYIR-------RELFE-------KARDIF 272 (594)
Q Consensus 212 ~~w~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~ 272 (594)
.+|..++.++..++...... .+..++++++..+|.+ +.+|+.+|.++.. .|+++ +|+++|
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~-~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHH-PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 79999999988766432211 2346789999999976 8999999999986 68877 899999
Q ss_pred HHHHh-hhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccc
Q 007648 273 EEGMM-TVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHD 351 (594)
Q Consensus 273 ~~al~-~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (594)
++|++ ..|++. .+|..++.++...
T Consensus 310 ~~Al~~~~p~~~---~l~~~~~~~~~~~---------------------------------------------------- 334 (530)
T 2ooe_A 310 ERAISTLLKKNM---LLYFAYADYEESR---------------------------------------------------- 334 (530)
T ss_dssp HHHTTTTCSSCH---HHHHHHHHHHHHT----------------------------------------------------
T ss_pred HHHHHHhCcccH---HHHHHHHHHHHhc----------------------------------------------------
Confidence 99997 677764 6788887776541
Q ss_pred hhhHHHHHHHHHhhhhhchhhhhhhhhccCCCCh-HHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHH
Q 007648 352 VKDVDLRLARLEHLMNRRPELANSVLLRQNPHNV-EQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVA 428 (594)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~-~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~ 428 (594)
+....+...|++ ++..+|.++ .+|..++.++. |++++|+.+|++|+.. +|. ...+|+.
T Consensus 335 -g~~~~A~~~~~~------------al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-~~~-----~~~~~~~ 395 (530)
T 2ooe_A 335 -MKYEKVHSIYNR------------LLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-ART-----RHHVYVT 395 (530)
T ss_dssp -TCHHHHHHHHHH------------HHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-TTC-----CTHHHHH
T ss_pred -CCHHHHHHHHHH------------HhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-cCC-----chHHHHH
Confidence 123446677888 467788885 69999998874 7899999999999985 442 3566676
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhh
Q 007648 429 FAKLYE-TYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPV 507 (594)
Q Consensus 429 ~a~~~~-~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 507 (594)
.+.++. ..|++++|+.+|+++++..|+++ .+|..++.++.+.|+.++|+.+|++++...|.++
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~~p~~~----~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~------------ 459 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKKYGDIP----EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP------------ 459 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG------------
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHCCCCH----HHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH------------
Confidence 666643 58999999999999999999999 9999999999999999999999999999876311
Q ss_pred hHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCch
Q 007648 508 QMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP 549 (594)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~ 549 (594)
.....+|..|++++...|+.+.+.+++.++++..|+++
T Consensus 460 ----~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 460 ----EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 497 (530)
T ss_dssp ----GGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHH
T ss_pred ----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhc
Confidence 01346999999999999999999999999999999643
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=7.7e-33 Score=285.68 Aligned_cols=374 Identities=13% Similarity=0.089 Sum_probs=323.7
Q ss_pred HHcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcc
Q 007648 37 KREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQK 116 (594)
Q Consensus 37 ~~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~ 116 (594)
...|++++|...|+++++..|.++..|....... ...+++++|...++++++.+|.++..|..++..+.+.|
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--------~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIH--------FQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH--------HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence 3579999999999999999999999998877665 34588999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHH---HHHHHHHhcccHHHHHHHH
Q 007648 117 FITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIE---DFIEFLVKSKLWQEAAERL 193 (594)
Q Consensus 117 ~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~---~~~~~~~~~~~~~~a~~~~ 193 (594)
++++|...|++++...|.. ...|..++......|+. ++|++.|+++++.+|++.. .++.++...|++++|...|
T Consensus 82 ~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDF--IDGYINLAAALVAAGDM-EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHSCS-SHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcch--HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999999999999999986 67888888888899999 9999999999999999886 3457788899999999998
Q ss_pred HHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHH
Q 007648 194 ASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFE 273 (594)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~ 273 (594)
++++. ..|++ ...|..+|..+...|++++|...|+
T Consensus 159 ~~al~--------------------------------------------~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 193 (388)
T 1w3b_A 159 LKAIE--------------------------------------------TQPNF-AVAWSNLGCVFNAQGEIWLAIHHFE 193 (388)
T ss_dssp HHHHH--------------------------------------------HCTTC-HHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHH--------------------------------------------hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 87762 11222 4689999999999999999999999
Q ss_pred HHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchh
Q 007648 274 EGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVK 353 (594)
Q Consensus 274 ~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (594)
+++...|+... .+......... .+
T Consensus 194 ~al~~~p~~~~---~~~~lg~~~~~-----------------------------------------------------~~ 217 (388)
T 1w3b_A 194 KAVTLDPNFLD---AYINLGNVLKE-----------------------------------------------------AR 217 (388)
T ss_dssp HHHHHCTTCHH---HHHHHHHHHHT-----------------------------------------------------TT
T ss_pred HHHhcCCCcHH---HHHHHHHHHHH-----------------------------------------------------cC
Confidence 99999887652 22222211110 11
Q ss_pred hHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHH
Q 007648 354 DVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAK 431 (594)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~ 431 (594)
....++..|++ ++..+|+++.+|..++.++. |++++|+..|++++.. .|. .+.+|..+|.
T Consensus 218 ~~~~A~~~~~~------------al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~-----~~~~~~~l~~ 279 (388)
T 1w3b_A 218 IFDRAVAAYLR------------ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-QPH-----FPDAYCNLAN 279 (388)
T ss_dssp CTTHHHHHHHH------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-CSS-----CHHHHHHHHH
T ss_pred CHHHHHHHHHH------------HHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCC-----CHHHHHHHHH
Confidence 12234556666 47889999999999988874 8999999999999986 443 5789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHh
Q 007648 432 LYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKL 511 (594)
Q Consensus 432 ~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 511 (594)
++...|++++|+..|+++++..|+++ ..|..++.++.+.|++++|...|+++++..|+
T Consensus 280 ~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------------ 337 (388)
T 1w3b_A 280 ALKEKGSVAEAEDCYNTALRLCPTHA----DSLNNLANIKREQGNIEEAVRLYRKALEVFPE------------------ 337 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT------------------
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------------
Confidence 99999999999999999999999999 89999999999999999999999999999995
Q ss_pred hccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhch
Q 007648 512 HKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTL 564 (594)
Q Consensus 512 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~ 564 (594)
++..+..++.++.+.|++++|...|+++++++|+++.+|.+++.++...|+
T Consensus 338 --~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 338 --FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp --CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 568899999999999999999999999999999999999999999987764
No 4
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=100.00 E-value=1.5e-32 Score=295.82 Aligned_cols=420 Identities=16% Similarity=0.224 Sum_probs=319.6
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHH
Q 007648 48 IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDR 127 (594)
Q Consensus 48 ~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~r 127 (594)
+|+++|+.+|.++++|..++... ..|++++|+.+|++|++.+|.++.+|..|+.++.+.|+++.|+.+|+|
T Consensus 1 ~le~al~~~P~~~~~w~~l~~~~---------~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~r 71 (530)
T 2ooe_A 1 MAEKKLEENPYDLDAWSILIREA---------QNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQR 71 (530)
T ss_dssp CHHHHHHHCTTCHHHHHHHHHHH---------HSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChhhHhhhCCCCHHHHHHHHHHH---------HhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 47999999999999999999853 247899999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHHHHH-HcCCchHHHHH----HHHHHHhh---CCCCHH---HHHHHHHh---------cccHH
Q 007648 128 ALCALPVTQHDRIWEIYLRFVE-QEGIPIETSLR----VYRRYLKY---DPSHIE---DFIEFLVK---------SKLWQ 187 (594)
Q Consensus 128 al~~~p~~~~~~~w~~~~~~~~-~~~~~~~~a~~----~~~~~l~~---~p~~~~---~~~~~~~~---------~~~~~ 187 (594)
++..+|. ..+|..|+.+.. ..|+. +.|++ +|++++.. +|.+.. .|+.++.. .|+++
T Consensus 72 al~~~p~---~~lw~~~~~~~~~~~~~~-~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 147 (530)
T 2ooe_A 72 CLMKVLH---IDLWKCYLSYVRETKGKL-PSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRIT 147 (530)
T ss_dssp HTTTCCC---HHHHHHHHHHHHHHTTTS-TTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHH
T ss_pred HHhcCCC---hHHHHHHHHHHHHHccch-hhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHH
Confidence 9999994 579999998764 55666 66554 88888875 445444 35566654 78999
Q ss_pred HHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhccccc-----c-----cCcHHHHHHH------HHhh-----ccc
Q 007648 188 EAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEI-----S-----GLNVDAIIRG------GIRK-----FTD 246 (594)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-----~-----~~~~~~~~~~------~~~~-----~p~ 246 (594)
+|+.+|++++..|.. ....+|..+..++...+... . ...+..+++. ++.. .|.
T Consensus 148 ~a~~~y~~al~~P~~------~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~ 221 (530)
T 2ooe_A 148 AVRRVYQRGCVNPMI------NIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ 221 (530)
T ss_dssp HHHHHHHHHTTSCCT------THHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC
T ss_pred HHHHHHHHHHhchhh------hHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCC
Confidence 999999999964432 23467888887765433210 0 0001111211 2221 121
Q ss_pred ------hhHHHHHHHHHHHHHhc----cH----HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 007648 247 ------EVGRLWTSLADYYIRRE----LF----EKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVE 312 (594)
Q Consensus 247 ------~~~~~~~~la~~~~~~g----~~----~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~ 312 (594)
....+|..+..+....+ +. .++..+|++++...|.++ .+|..++.+....... +...++...
T Consensus 222 ~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~---~~w~~~~~~~~~~~~~-~~~~g~~~~ 297 (530)
T 2ooe_A 222 NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHP---DIWYEAAQYLEQSSKL-LAEKGDMNN 297 (530)
T ss_dssp --CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHH-HHTTTCCHH
T ss_pred CChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhchh-hhhccchhh
Confidence 11468998888776542 22 478899999999999876 5777777765532100 000111000
Q ss_pred ccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhc-cCCCChHHHHHH
Q 007648 313 EEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLR-QNPHNVEQWHRR 391 (594)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~p~~~~~~~~~ 391 (594)
+......++..|++ ++. .+|++..+|..+
T Consensus 298 --------------------------------------a~~~~~~A~~~~~~------------Al~~~~p~~~~l~~~~ 327 (530)
T 2ooe_A 298 --------------------------------------AKLFSDEAANIYER------------AISTLLKKNMLLYFAY 327 (530)
T ss_dssp --------------------------------------HHHHHHHHHHHHHH------------HTTTTCSSCHHHHHHH
T ss_pred --------------------------------------hhhhhHHHHHHHHH------------HHHHhCcccHHHHHHH
Confidence 00001245677888 465 689999999999
Q ss_pred HHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHH
Q 007648 392 VKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAE 469 (594)
Q Consensus 392 ~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~ 469 (594)
+.++. |++++|+.+|++++.. +|.+ ...+|+.++.++.+.|++++|+.+|++|++..|.+. .++...+.
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~----~~~~~~a~ 398 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLAI-EDID----PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH----HVYVTAAL 398 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHS-SSSC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCT----HHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHhCc-cccC----chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCch----HHHHHHHH
Confidence 99884 8999999999999995 5532 236999999999999999999999999999999887 67776666
Q ss_pred HH-HhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCc
Q 007648 470 ME-LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT 548 (594)
Q Consensus 470 ~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~ 548 (594)
++ ...|++++|+.+|+++++.+|+ ++.+|..|++++.+.|+.++|+.+|++|++..|.+
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~p~--------------------~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKYGD--------------------IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHcCChhHHHHHHHHHHHHCCC--------------------CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 54 3589999999999999999995 67999999999999999999999999999998877
Q ss_pred hH----HHHHHHHHHHHhchhhhhh
Q 007648 549 PQ----IIINYALLLEVWTLLHVFL 569 (594)
Q Consensus 549 ~~----~~~~~~~~~~~~g~~~~a~ 569 (594)
|. +|..++.++..+|+.+.+.
T Consensus 459 ~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 459 PEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp GGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 66 9999999999999887775
No 5
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=100.00 E-value=2.1e-32 Score=297.21 Aligned_cols=440 Identities=13% Similarity=0.167 Sum_probs=322.5
Q ss_pred hhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccc---H
Q 007648 42 FKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKF---I 118 (594)
Q Consensus 42 ~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~---~ 118 (594)
....+..|++.|..+|.+.+.|..|++++.+ .++++.++.+|++++..+|.++.+|..|+.++.+.++ +
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~--------~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~ 119 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVS--------LKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDA 119 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHh--------cCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchH
Confidence 3456678999999999999999999999843 3678999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCch-------HHHHHHHHHHHhh----CCCCHH---HHHHHHH---
Q 007648 119 TKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPI-------ETSLRVYRRYLKY----DPSHIE---DFIEFLV--- 181 (594)
Q Consensus 119 ~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~-------~~a~~~~~~~l~~----~p~~~~---~~~~~~~--- 181 (594)
+.++.+|+||+..+|.+.+..+|..|+.+....+... +..+++|++++.. +|.+.. .|++++.
T Consensus 120 ~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~ 199 (679)
T 4e6h_A 120 AVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWK 199 (679)
T ss_dssp HHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcc
Confidence 9999999999999942224789999999987665431 3456899999874 555543 4566654
Q ss_pred ------hcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhccccccc----------CcHHHHHHH------
Q 007648 182 ------KSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISG----------LNVDAIIRG------ 239 (594)
Q Consensus 182 ------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~----------~~~~~~~~~------ 239 (594)
.+++++.++.+|++++..|.. ...++|..|..|+...+..... ..+...++.
T Consensus 200 ~~~~~eeq~~~~~~R~iy~raL~iP~~------~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~ 273 (679)
T 4e6h_A 200 PVNKFEEQQRVQYIRKLYKTLLCQPMD------CLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITK 273 (679)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTTSCCS------SHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCcHHHHhHHHHHHHHHHHHHhCccH------HHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 245688999999999953321 2347899999888763221100 000011111
Q ss_pred HHhh-ccc------------------hhHHHHHHHHHHHHHhc-------cHHHHHHHHHHHHhhhccccchHHHHHHHH
Q 007648 240 GIRK-FTD------------------EVGRLWTSLADYYIRRE-------LFEKARDIFEEGMMTVVTVRDFSVIFDSYS 293 (594)
Q Consensus 240 ~~~~-~p~------------------~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~l~~~~~ 293 (594)
++.. +|. ....+|..+..+....+ ....++.+|+++|..+|..+ .+|..|+
T Consensus 274 ~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~---~lW~~ya 350 (679)
T 4e6h_A 274 GLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAP---EIWFNMA 350 (679)
T ss_dssp TCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH---HHHHHHH
T ss_pred hHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCH---HHHHHHH
Confidence 1111 111 12367888888887654 23456778899988888765 6888888
Q ss_pred HHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHH-HHHHhhhhhchhh
Q 007648 294 QFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRL-ARLEHLMNRRPEL 372 (594)
Q Consensus 294 ~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 372 (594)
.++.... + +..++ ..|++
T Consensus 351 ~~~~~~~--------~---------------------------------------------~~~a~r~il~r-------- 369 (679)
T 4e6h_A 351 NYQGEKN--------T---------------------------------------------DSTVITKYLKL-------- 369 (679)
T ss_dssp HHHHHHS--------C---------------------------------------------CTTHHHHHHHH--------
T ss_pred HHHHhcC--------c---------------------------------------------HHHHHHHHHHH--------
Confidence 8776521 0 00122 55666
Q ss_pred hhhhhhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccC----------CCcc------cCCchHHHHHHHHHHH
Q 007648 373 ANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVD----------PMKA------VGKPHTLWVAFAKLYE 434 (594)
Q Consensus 373 ~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~----------~~~~------~~~~~~~~~~~a~~~~ 434 (594)
++...|.+..+|+.++.++. |++++|+.+|++++...+ |... ......+|+.++.++.
T Consensus 370 ----Ai~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 370 ----GQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp ----HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 46778888888888888875 788889999999887531 2100 0013568999998888
Q ss_pred hcCCHHHHHHHHHHHHhc-cCCChhhHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhh
Q 007648 435 TYKDIANARVIFDKAVQV-NYKTVDHLASIWCEWAEMELRHK-NFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLH 512 (594)
Q Consensus 435 ~~~~~~~A~~~~~kal~~-~p~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 512 (594)
+.|+.++||++|++|++. .+..+ .+|..++.++.+.+ +.+.|+++|+++++..|+
T Consensus 446 R~~~l~~AR~vf~~A~~~~~~~~~----~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~------------------- 502 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRLKKLVTP----DIYLENAYIEYHISKDTKTACKVLELGLKYFAT------------------- 502 (679)
T ss_dssp HHHCHHHHHHHHHHHHHTGGGSCT----HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT-------------------
T ss_pred HcCCHHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-------------------
Confidence 888889999999999887 44556 78888888887754 488999999999988884
Q ss_pred ccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccC---CchHHHHHHHHHHHHhchhhhhh-------hcccCcccchhhh
Q 007648 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLRI---ATPQIIINYALLLEVWTLLHVFL-------LHVPFTFSGLCMF 582 (594)
Q Consensus 513 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P---~~~~~~~~~~~~~~~~g~~~~a~-------~~~~~~~~~~~~~ 582 (594)
++.+|..|++++...|+.+.||.+|++|++..| ....+|..|..++.+.|+.+.+. +.+|-. .-+.++
T Consensus 503 -~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~-~~~~~f 580 (679)
T 4e6h_A 503 -DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV-NKLEEF 580 (679)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC-CHHHHH
T ss_pred -chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-cHHHHH
Confidence 779999999999999999999999999999988 46689999999999999887664 566643 455666
Q ss_pred hhhhee
Q 007648 583 TFFFTV 588 (594)
Q Consensus 583 ~~~~~~ 588 (594)
+-+|.+
T Consensus 581 ~~ry~~ 586 (679)
T 4e6h_A 581 TNKYKV 586 (679)
T ss_dssp HHHTCB
T ss_pred HHHhcC
Confidence 666654
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.3e-30 Score=267.06 Aligned_cols=347 Identities=13% Similarity=0.142 Sum_probs=302.3
Q ss_pred CchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHH
Q 007648 80 THPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSL 159 (594)
Q Consensus 80 ~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~ 159 (594)
..|++++|...|+++++.+|+++..+..++.++...|+++.|...++++++..|.+ ...|..++..+...|++ ++|+
T Consensus 11 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~--~~~~~~lg~~~~~~g~~-~~A~ 87 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL--AEAYSNLGNVYKERGQL-QEAI 87 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCH-HHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHCCCH-HHHH
Confidence 35899999999999999999999999999999999999999999999999999986 78899999999999999 9999
Q ss_pred HHHHHHHhhCCCCHHH---HHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHH
Q 007648 160 RVYRRYLKYDPSHIED---FIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAI 236 (594)
Q Consensus 160 ~~~~~~l~~~p~~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 236 (594)
..|+++++.+|++... ++..+...|++++|...|++++.
T Consensus 88 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-------------------------------------- 129 (388)
T 1w3b_A 88 EHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ-------------------------------------- 129 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH--------------------------------------
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------------------
Confidence 9999999999999864 34668888999999998877762
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCccccc
Q 007648 237 IRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEED 316 (594)
Q Consensus 237 ~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~ 316 (594)
..|+. ..++..+|.++...|++++|.+.|++++...|+... .|........
T Consensus 130 ------~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~------------------- 180 (388)
T 1w3b_A 130 ------YNPDL-YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV---AWSNLGCVFN------------------- 180 (388)
T ss_dssp ------HCTTC-THHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHH-------------------
T ss_pred ------hCCCc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHH-------------------
Confidence 12222 468899999999999999999999999999887652 2322221111
Q ss_pred ccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc
Q 007648 317 DEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE 396 (594)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~ 396 (594)
..+....++..|++ ++..+|+++.+|..++.++.
T Consensus 181 ----------------------------------~~g~~~~A~~~~~~------------al~~~p~~~~~~~~lg~~~~ 214 (388)
T 1w3b_A 181 ----------------------------------AQGEIWLAIHHFEK------------AVTLDPNFLDAYINLGNVLK 214 (388)
T ss_dssp ----------------------------------TTTCHHHHHHHHHH------------HHHHCTTCHHHHHHHHHHHH
T ss_pred ----------------------------------HcCCHHHHHHHHHH------------HHhcCCCcHHHHHHHHHHHH
Confidence 01234456677877 47889999999999999885
Q ss_pred --CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhc
Q 007648 397 --GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRH 474 (594)
Q Consensus 397 --~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~ 474 (594)
|++++|...|++++.. .|. .+.+|..+|.++...|++++|+..|+++++..|+++ .+|..++..+.+.
T Consensus 215 ~~~~~~~A~~~~~~al~~-~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 215 EARIFDRAVAAYLRALSL-SPN-----HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP----DAYCNLANALKEK 284 (388)
T ss_dssp TTTCTTHHHHHHHHHHHH-CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH----HHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhh-CcC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHc
Confidence 7899999999999986 443 578999999999999999999999999999999999 8999999999999
Q ss_pred CChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHH
Q 007648 475 KNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIIN 554 (594)
Q Consensus 475 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~ 554 (594)
|++++|+..|+++++..|+ ++..|..++.++...|++++|...|+++++.+|+++.++.+
T Consensus 285 g~~~~A~~~~~~al~~~p~--------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 344 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRLCPT--------------------HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTT--------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcc--------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 9999999999999999995 56889999999999999999999999999999999999999
Q ss_pred HHHHHHHhchhhhhhhcc
Q 007648 555 YALLLEVWTLLHVFLLHV 572 (594)
Q Consensus 555 ~~~~~~~~g~~~~a~~~~ 572 (594)
++.++.+.|++++|+.++
T Consensus 345 l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 345 LASVLQQQGKLQEALMHY 362 (388)
T ss_dssp HHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 999999999999987554
No 7
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=100.00 E-value=2.3e-31 Score=281.63 Aligned_cols=426 Identities=15% Similarity=0.131 Sum_probs=317.4
Q ss_pred CCCcchHhHHHHhhCCCCHHHHHHHHHHHHcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHH
Q 007648 9 PSEDDLLYEEELLRNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLN 88 (594)
Q Consensus 9 ~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~ 88 (594)
+...+..|++++...|. +++++++.+|+||+...| |+++|..|+.++.... ...+.++
T Consensus 11 i~~aR~vyer~l~~~P~--------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~-------~~~~~i~ 68 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS--------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVS-------QKKFKLY 68 (493)
T ss_dssp -CCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC-----------CTH
T ss_pred hHHHHHHHHHHHHHCCC--------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhC-------chHHHHH
Confidence 45566777777777776 789999999999999999 9999999999986641 1246788
Q ss_pred HHHHHHHHh---cCCChHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHH
Q 007648 89 NTFERALVT---MHKMPRIWIMYLETLTS----QKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRV 161 (594)
Q Consensus 89 ~~~~~al~~---~P~~~~lw~~y~~~~~~----~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~ 161 (594)
.+|++|+.. +|.++.+|..|++++.. +++++.+|.+|+|||. .|..+...+|..|..|+...+ . ..+.++
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~-~-~~~~~~ 145 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELN-K-ITGKKI 145 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHC-H-HHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhc-c-ccHHHH
Confidence 999999986 78999999999999763 5789999999999999 687777899999999987755 3 455555
Q ss_pred HHHHHhhCCCCHHHHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccc----cCcHHHHH
Q 007648 162 YRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEIS----GLNVDAII 237 (594)
Q Consensus 162 ~~~~l~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~----~~~~~~~~ 237 (594)
..+.. ..+..|+..|+.+.. ..+..+.++|..|+++++.+|..+. ...+..++
T Consensus 146 ~~~~~-----------------~~y~~ar~~y~~~~~------~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~y 202 (493)
T 2uy1_A 146 VGDTL-----------------PIFQSSFQRYQQIQP------LIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIH 202 (493)
T ss_dssp HHHHH-----------------HHHHHHHHHHHHHHH------HHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred HHHHh-----------------HHHHHHHHHHHHHHH------HHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHH
Confidence 44322 234555555555541 0111245789999999988764321 12345789
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccc
Q 007648 238 RGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDD 317 (594)
Q Consensus 238 ~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~ 317 (594)
++++..+|.. +.+|+.++.++.+.|+.+.|+++|++|+.. |.+. .+|..|+.+.+..
T Consensus 203 e~al~~~p~~-~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~---~l~~~y~~~~e~~------------------ 259 (493)
T 2uy1_A 203 NYILDSFYYA-EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM---FLSLYYGLVMDEE------------------ 259 (493)
T ss_dssp HHHHHHTTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS---HHHHHHHHHTTCT------------------
T ss_pred HHHHHcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH---HHHHHHHhhcchh------------------
Confidence 9999998876 889999999999999999999999999999 8875 4666666552100
Q ss_pred cccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc-
Q 007648 318 EEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE- 396 (594)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~- 396 (594)
.++ ..+...+ ..++. ..+ .....+....+|..++.++.
T Consensus 260 ---------~~~-------~~l~~~~----------------~~~~~--------~~~-~~~~~~~~~~lw~~y~~~~~r 298 (493)
T 2uy1_A 260 ---------AVY-------GDLKRKY----------------SMGEA--------ESA-EKVFSKELDLLRINHLNYVLK 298 (493)
T ss_dssp ---------HHH-------HHHHHHT----------------C-------------------CHHHHHHHHHHHHHHHHH
T ss_pred ---------HHH-------HHHHHHH----------------Hhhcc--------chh-hhhcccccHHHHHHHHHHHHH
Confidence 000 0000000 00000 000 00011123467999998873
Q ss_pred -CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcC-CHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhc
Q 007648 397 -GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYK-DIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRH 474 (594)
Q Consensus 397 -~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~ 474 (594)
++.+.|+.+|++| . .++ . ...+|+.+|.++...+ +.++|+.+|+++++..|+++ ++|..|++++.+.
T Consensus 299 ~~~~~~AR~i~~~A-~-~~~-~----~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~----~~~~~yid~e~~~ 367 (493)
T 2uy1_A 299 KRGLELFRKLFIEL-G-NEG-V----GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDST----LLKEEFFLFLLRI 367 (493)
T ss_dssp HHCHHHHHHHHHHH-T-TSC-C----CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh-h-CCC-C----ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHc
Confidence 6799999999999 4 333 1 4679999999988655 69999999999999999999 8999999999999
Q ss_pred CChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhcc----CCchH
Q 007648 475 KNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR----IATPQ 550 (594)
Q Consensus 475 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----P~~~~ 550 (594)
|+.+.||.+|+++.+ +..+|..|+++|...|+.+.++++++++++.- .++|.
T Consensus 368 ~~~~~aR~l~er~~k------------------------~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~~~~~~~~ 423 (493)
T 2uy1_A 368 GDEENARALFKRLEK------------------------TSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKADAILPPL 423 (493)
T ss_dssp TCHHHHHHHHHHSCC------------------------BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCBCCC
T ss_pred CCHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhcccccCCcc
Confidence 999999999999821 45899999999999999999999999999732 13443
Q ss_pred -HHHHHHHHHHHhchhhhhhhcccCcccchhh
Q 007648 551 -IIINYALLLEVWTLLHVFLLHVPFTFSGLCM 581 (594)
Q Consensus 551 -~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 581 (594)
+...|..|+..+|.+++.++.|.++..+.|-
T Consensus 424 ~~~~~~~~fe~~~g~l~~~~~~~~~~~~~~~~ 455 (493)
T 2uy1_A 424 PPREHNVQMEGILGRYHCFLDSFNFLDLKIRD 455 (493)
T ss_dssp CCC--CCCCCHHHHHHHHHHHHHCBTTBCCCC
T ss_pred cccccHHHHHHHhhhHHHHHHHhhhhccccCC
Confidence 2245557778889999999999999999887
No 8
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.98 E-value=2.4e-29 Score=274.55 Aligned_cols=431 Identities=11% Similarity=0.031 Sum_probs=310.3
Q ss_pred CCHHHHHHHHHHH-HcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChH
Q 007648 25 FSLKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPR 103 (594)
Q Consensus 25 ~~~~~w~~~~~~~-~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~ 103 (594)
.+...|...+... ..|+++.|..+|++++...|+ ...|...+... ...|++++|+.+|++++.. |.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~--------~~~g~~~~A~~~~~~~~~~-~~~~~ 151 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGN-PNDAFWLAQVY--------CCTGDYARAKCLLTKEDLY-NRSSA 151 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCC-HHHHHHHHHHH--------HHTTCHHHHHHHHHHTCGG-GTCHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCC-chHHHHHHHHH--------HHcCcHHHHHHHHHHHhcc-ccchh
Confidence 5678899999855 589999999999999999994 46676666655 3458999999999999765 77899
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC-----------------CHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 007648 104 IWIMYLETLTSQKFITKARRTFDRALCALPVT-----------------QHDRIWEIYLRFVEQEGIPIETSLRVYRRYL 166 (594)
Q Consensus 104 lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~-----------------~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l 166 (594)
+|..++.++.+.|++++|+.+|++. .|.. .....|..++..+...|+. ++|++.|++++
T Consensus 152 ~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 227 (597)
T 2xpi_A 152 CRYLAAFCLVKLYDWQGALNLLGET---NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF-DRAKECYKEAL 227 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHCSS---CTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcc---CCccccccccccccccccccchhHHHHHHHHHHHHHcCCH-HHHHHHHHHHH
Confidence 9999999999999999999999963 3432 1367899999999999999 99999999999
Q ss_pred hhCCCCHHHHHHH-----------------------------------------HHhcccHHHHHHHHHHhhcCcccccc
Q 007648 167 KYDPSHIEDFIEF-----------------------------------------LVKSKLWQEAAERLASVLNDDQFYSI 205 (594)
Q Consensus 167 ~~~p~~~~~~~~~-----------------------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~ 205 (594)
+.+|.+...+..+ +.+.|++++|...|++++..|
T Consensus 228 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~----- 302 (597)
T 2xpi_A 228 MVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE----- 302 (597)
T ss_dssp HHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGG-----
T ss_pred HhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCC-----
Confidence 9999987643221 113344555555555444211
Q ss_pred cccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccch
Q 007648 206 KGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDF 285 (594)
Q Consensus 206 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 285 (594)
.....|..++......++. ..+..++++++...|++ ..+|..++..+...|++++|..+|++++...|.+.
T Consensus 303 ---~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 373 (597)
T 2xpi_A 303 ---KSSDLLLCKADTLFVRSRF---IDVLAITTKILEIDPYN-LDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKA-- 373 (597)
T ss_dssp ---GCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHCTTC-CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSH--
T ss_pred ---chHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHcCccc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccH--
Confidence 1123333333333332221 11223334444443332 33444444444444444444444444444433322
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhh
Q 007648 286 SVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHL 365 (594)
Q Consensus 286 ~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (594)
..+...+... . ..+.+..++..|++
T Consensus 374 -~~~~~l~~~~-------------------------------------------~----------~~g~~~~A~~~~~~- 398 (597)
T 2xpi_A 374 -VTWLAVGIYY-------------------------------------------L----------CVNKISEARRYFSK- 398 (597)
T ss_dssp -HHHHHHHHHH-------------------------------------------H----------HTTCHHHHHHHHHH-
T ss_pred -HHHHHHHHHH-------------------------------------------H----------HhccHHHHHHHHHH-
Confidence 1111111100 0 02345556677777
Q ss_pred hhhchhhhhhhhhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHH
Q 007648 366 MNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANAR 443 (594)
Q Consensus 366 ~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 443 (594)
++..+|.++.+|..++..+. |++++|+..|++++...|+ ....|..++..+...|++++|+
T Consensus 399 -----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 399 -----------SSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG------THLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp -----------HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT------CSHHHHHHHHHHHHHTCHHHHH
T ss_pred -----------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHcCCHHHHH
Confidence 46778999999999988874 8999999999999986433 4688999999999999999999
Q ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHH
Q 007648 444 VIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVD 523 (594)
Q Consensus 444 ~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (594)
.+|+++++..|+++ ..|..++.++.+.|++++|.++|+++++..|+.. .. + . ....+|..++.
T Consensus 462 ~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~-p-~----~~~~~~~~l~~ 524 (597)
T 2xpi_A 462 EYLQSSYALFQYDP----LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ-------SN-E-K----PWAATWANLGH 524 (597)
T ss_dssp HHHHHHHHHCCCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-------CC-S-G----GGHHHHHHHHH
T ss_pred HHHHHHHHhCCCCh----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc-------cc-h-h----hHHHHHHHHHH
Confidence 99999999999998 8899999999999999999999999998843200 00 0 0 01578999999
Q ss_pred HHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhhhcc
Q 007648 524 LEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFLLHV 572 (594)
Q Consensus 524 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~~~~ 572 (594)
++.+.|++++|.+.|+++++..|+++.+|..++.++...|++++|+..+
T Consensus 525 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 573 (597)
T 2xpi_A 525 AYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHL 573 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999997544
No 9
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.5e-29 Score=274.36 Aligned_cols=426 Identities=9% Similarity=-0.009 Sum_probs=336.3
Q ss_pred cchHhHHHHhhCCCCHHHHHHHHHHH-HcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHH
Q 007648 12 DDLLYEEELLRNPFSLKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNT 90 (594)
Q Consensus 12 ~~~~~e~~l~~~P~~~~~w~~~~~~~-~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~ 90 (594)
+...|++.+..+|. ...|..++... ..|++++|..+|++++.. |.++..|...+... ...|++++|+.+
T Consensus 103 A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~--------~~~g~~~~A~~~ 172 (597)
T 2xpi_A 103 AAFVGEKVLDITGN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCL--------VKLYDWQGALNL 172 (597)
T ss_dssp HHHHHHHHHHHHCC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHH--------HHTTCHHHHHHH
T ss_pred HHHHHHHHHhhCCC-chHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHH--------HHHhhHHHHHHH
Confidence 34567777777884 47777777744 589999999999999865 77899999888776 345899999999
Q ss_pred HHHHHHhcCCC-------------------hHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH----
Q 007648 91 FERALVTMHKM-------------------PRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRF---- 147 (594)
Q Consensus 91 ~~~al~~~P~~-------------------~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~---- 147 (594)
|++ ..|.. +..|..++..+.+.|++++|+..|+++++..|.+ ...|..++.+
T Consensus 173 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~ 247 (597)
T 2xpi_A 173 LGE---TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC--YEAFDQLVSNHLLT 247 (597)
T ss_dssp HCS---SCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHTTCSC
T ss_pred Hhc---cCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchh--hHHHHHHHHhhccc
Confidence 997 34554 8899999999999999999999999999999975 5555544321
Q ss_pred ----------------------------------HHHcCCchHHHHHHHHHHHhhCCCCHH---HHHHHHHhcccHHHHH
Q 007648 148 ----------------------------------VEQEGIPIETSLRVYRRYLKYDPSHIE---DFIEFLVKSKLWQEAA 190 (594)
Q Consensus 148 ----------------------------------~~~~~~~~~~a~~~~~~~l~~~p~~~~---~~~~~~~~~~~~~~a~ 190 (594)
+...|+. ++|+++|+++++. |.+.. .++..+...|++++|.
T Consensus 248 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 325 (597)
T 2xpi_A 248 ADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDEL-RRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVL 325 (597)
T ss_dssp HHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHH-HHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchH-HHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHH
Confidence 1123445 7899999998887 55554 3457789999999999
Q ss_pred HHHHHhhc-CcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHH
Q 007648 191 ERLASVLN-DDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKAR 269 (594)
Q Consensus 191 ~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~ 269 (594)
..|++++. +|.. ...|..++..+...++. ..+..++++++...|++ ..+|..++..+...|++++|+
T Consensus 326 ~~~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 326 AITTKILEIDPYN--------LDVYPLHLASLHESGEK---NKLYLISNDLVDRHPEK-AVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHHHHHHHHCTTC--------CTTHHHHHHHHHHHTCH---HHHHHHHHHHHHHCTTS-HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCccc--------HHHHHHHHHHHHHhCCH---HHHHHHHHHHHhhCccc-HHHHHHHHHHHHHhccHHHHH
Confidence 99999984 3321 12355444444444332 12446677777777766 679999999999999999999
Q ss_pred HHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccc
Q 007648 270 DIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWL 349 (594)
Q Consensus 270 ~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (594)
+.|++++...|.+. ..|...+.....
T Consensus 394 ~~~~~~~~~~~~~~---~~~~~l~~~~~~--------------------------------------------------- 419 (597)
T 2xpi_A 394 RYFSKSSTMDPQFG---PAWIGFAHSFAI--------------------------------------------------- 419 (597)
T ss_dssp HHHHHHHHHCTTCH---HHHHHHHHHHHH---------------------------------------------------
T ss_pred HHHHHHHHhCCCCH---HHHHHHHHHHHH---------------------------------------------------
Confidence 99999999887754 233333222111
Q ss_pred cchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHH
Q 007648 350 HDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWV 427 (594)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~ 427 (594)
.+....++..|++ ++...|++..+|..++..+. |++++|...|++++...|. .+..|.
T Consensus 420 --~g~~~~A~~~~~~------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~ 479 (597)
T 2xpi_A 420 --EGEHDQAISAYTT------------AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY------DPLLLN 479 (597)
T ss_dssp --HTCHHHHHHHHHH------------HHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------CHHHHH
T ss_pred --cCCHHHHHHHHHH------------HHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHH
Confidence 1234446667777 46778999999999988874 8999999999999986443 578899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCC---ChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCC
Q 007648 428 AFAKLYETYKDIANARVIFDKAVQVNYK---TVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGN 504 (594)
Q Consensus 428 ~~a~~~~~~~~~~~A~~~~~kal~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 504 (594)
.++.++.+.|++++|+.+|+++++..|+ +|.....+|..++..+.+.|++++|+..|+++++..|+
T Consensus 480 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----------- 548 (597)
T 2xpi_A 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN----------- 548 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC-----------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-----------
Confidence 9999999999999999999999998432 44323378999999999999999999999999999994
Q ss_pred hhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 007648 505 EPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLE 560 (594)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~ 560 (594)
++..|..++.++.+.|++++|.+.|+++++++|+++.++..++.+|.
T Consensus 549 ---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 549 ---------DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp ---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred ---------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 67899999999999999999999999999999999999999998764
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=8.3e-27 Score=245.06 Aligned_cols=388 Identities=13% Similarity=0.088 Sum_probs=292.5
Q ss_pred CCCcchHhHHHHhhCCCCHHHHHHHHHHH-HcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHH
Q 007648 9 PSEDDLLYEEELLRNPFSLKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETL 87 (594)
Q Consensus 9 ~~~~~~~~e~~l~~~P~~~~~w~~~~~~~-~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A 87 (594)
.+.....+...+..+|.+...|...+... ..|+++.|...|+++++.+|.++..|...+... ...|++++|
T Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~--------~~~g~~~~A 79 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVF--------LAMGKSKAA 79 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH--------HHTTCHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH--------HHCCCHHHH
Confidence 34456678888999999999999999855 589999999999999999999999999888776 345899999
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHH---HHHHHHH------------HHHHHcC
Q 007648 88 NNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHD---RIWEIYL------------RFVEQEG 152 (594)
Q Consensus 88 ~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~---~~w~~~~------------~~~~~~~ 152 (594)
...|+++++.+|.++.+|..++.++..+|++++|...|+++++..|.+ . ..|..+. ......|
T Consensus 80 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 80 LPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE--NEEKEAQSQLIKSDEMQRLRSQALNAFGSG 157 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999974 5 5665543 3356678
Q ss_pred CchHHHHHHHHHHHhhCCCCHHH---HHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccc
Q 007648 153 IPIETSLRVYRRYLKYDPSHIED---FIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEIS 229 (594)
Q Consensus 153 ~~~~~a~~~~~~~l~~~p~~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 229 (594)
++ ++|+..|+++++..|.+... ++.++...|++++|...|++++.
T Consensus 158 ~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------------- 205 (450)
T 2y4t_A 158 DY-TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK------------------------------- 205 (450)
T ss_dssp CH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHH-------------------------------
T ss_pred CH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------------------
Confidence 88 99999999999999988863 35677888888888888777652
Q ss_pred cCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCC
Q 007648 230 GLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDL 309 (594)
Q Consensus 230 ~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~ 309 (594)
..|++ ..+|..+|.++...|++++|...|++++...|+... .+..+..+...
T Consensus 206 -------------~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~~~~~~~~----------- 257 (450)
T 2y4t_A 206 -------------LKNDN-TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR---CFAHYKQVKKL----------- 257 (450)
T ss_dssp -------------HHCSC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHH-----------
T ss_pred -------------hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHH---HHHHHHHHHHH-----------
Confidence 12222 568999999999999999999999999988887652 22111111000
Q ss_pred CCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHH
Q 007648 310 SVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWH 389 (594)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~ 389 (594)
..+.
T Consensus 258 ----------------------------------------------------------------------------~~~~ 261 (450)
T 2y4t_A 258 ----------------------------------------------------------------------------NKLI 261 (450)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 0011
Q ss_pred HHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHH
Q 007648 390 RRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEW 467 (594)
Q Consensus 390 ~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~ 467 (594)
.++..+ .|++++|+..|++++.. .|... .....+|..+|.++.+.|++++|+..++++++..|+++ .+|..+
T Consensus 262 ~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~~l 335 (450)
T 2y4t_A 262 ESAEELIRDGRYTDATSKYESVMKT-EPSIA-EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNV----NALKDR 335 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-CCSSH-HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH----HHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-CCcch-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----HHHHHH
Confidence 112222 37889999999999985 34211 00145788999999999999999999999999999999 999999
Q ss_pred HHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHH------------HHHHHhC-----C
Q 007648 468 AEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYV------------DLEESLG-----N 530 (594)
Q Consensus 468 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~g-----~ 530 (594)
+.++...|++++|...|+++++..|+ ++.++..++ +++..+| +
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~p~--------------------~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHNEN--------------------DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSS--------------------CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcc--------------------hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 99999999999999999999999995 344555555 3344455 6
Q ss_pred hHHHHHHHHH-HHhccCCch----------HHHHHHHHHHHHhchhhhh
Q 007648 531 LESTRAVYER-ILDLRIATP----------QIIINYALLLEVWTLLHVF 568 (594)
Q Consensus 531 ~~~A~~~~~~-al~~~P~~~----------~~~~~~~~~~~~~g~~~~a 568 (594)
.+++++.|++ +++..|++. ..+..++..+...|+.+..
T Consensus 396 ~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 396 KQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp TTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 6788999997 888888752 2556677778888877664
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.5e-27 Score=248.65 Aligned_cols=423 Identities=11% Similarity=0.050 Sum_probs=295.9
Q ss_pred HHHHHHHHHHH-HcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHH
Q 007648 27 LKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIW 105 (594)
Q Consensus 27 ~~~w~~~~~~~-~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw 105 (594)
.+.|...+... ..|+++.|...|+++++..| ++.+|...+... ...|++++|...|+++++.+|+++.+|
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~--------~~~g~~~~A~~~~~~al~~~p~~~~~~ 76 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACY--------VSVGDLKKVVEMSTKALELKPDYSKVL 76 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH--------HHHTCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHH--------HHHhhHHHHHHHHHHHhccChHHHHHH
Confidence 46677777744 58999999999999999999 688888887766 345899999999999999999999999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH---------cCCc----------------------
Q 007648 106 IMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQ---------EGIP---------------------- 154 (594)
Q Consensus 106 ~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~---------~~~~---------------------- 154 (594)
..++.++..+|++++|...|++++...|.+. ..+...+...... ++..
T Consensus 77 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (514)
T 2gw1_A 77 LRRASANEGLGKFADAMFDLSVLSLNGDFND-ASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSSCCG-GGTHHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc
Confidence 9999999999999999999999999988542 1111111111100 0000
Q ss_pred ----hHHHHHHHHHHHhhC--------CCCHHHHH---HHHHh---cccHHHHHHHHHHhhc--------Cccccccccc
Q 007648 155 ----IETSLRVYRRYLKYD--------PSHIEDFI---EFLVK---SKLWQEAAERLASVLN--------DDQFYSIKGK 208 (594)
Q Consensus 155 ----~~~a~~~~~~~l~~~--------p~~~~~~~---~~~~~---~~~~~~a~~~~~~~~~--------~~~~~~~~~~ 208 (594)
.......+....... |++...+. ..+.. .|++++|...|++++. .|.... ...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~ 234 (514)
T 2gw1_A 156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK-LKE 234 (514)
T ss_dssp -CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHH-HHH
T ss_pred cCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccc-cCh
Confidence 000000111111111 22233222 22333 7899999999998885 222100 001
Q ss_pred chHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHH
Q 007648 209 TKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVI 288 (594)
Q Consensus 209 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l 288 (594)
.....|..++......++. ..+...+++++...|+ ..+|..+|..+...|++++|...|++++...|.... .
T Consensus 235 ~~~~~~~~~~~~~~~~~~~---~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~ 306 (514)
T 2gw1_A 235 KLAISLEHTGIFKFLKNDP---LGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSS---V 306 (514)
T ss_dssp HHHHHHHHHHHHHHHSSCH---HHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTH---H
T ss_pred HHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHH---H
Confidence 1234555555444444321 1234556677777776 677888888888888888888888888887776652 2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhh
Q 007648 289 FDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNR 368 (594)
Q Consensus 289 ~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (594)
+......... .+....+...|++
T Consensus 307 ~~~l~~~~~~-----------------------------------------------------~~~~~~A~~~~~~---- 329 (514)
T 2gw1_A 307 YYHRGQMNFI-----------------------------------------------------LQNYDQAGKDFDK---- 329 (514)
T ss_dssp HHHHHHHHHH-----------------------------------------------------TTCTTHHHHHHHH----
T ss_pred HHHHHHHHHH-----------------------------------------------------hCCHHHHHHHHHH----
Confidence 2222111110 0112234556666
Q ss_pred chhhhhhhhhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 007648 369 RPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIF 446 (594)
Q Consensus 369 ~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 446 (594)
++..+|.+..+|..++.++. |++++|+..|++++...|. .+.+|..+|.++...|++++|+..|
T Consensus 330 --------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 330 --------AKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE------APEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp --------HHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT------CSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------HHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc------CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46778888889988888874 7899999999999886433 4678899999999999999999999
Q ss_pred HHHHhccCCChhhH--HHHHHHHHHHHHh---cCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHH
Q 007648 447 DKAVQVNYKTVDHL--ASIWCEWAEMELR---HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFY 521 (594)
Q Consensus 447 ~kal~~~p~~~~~~--~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (594)
++++...|+++... ..+|+.+|.++.. .|++++|...|+++++..|+ ++..|..+
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--------------------~~~~~~~l 455 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR--------------------SEQAKIGL 455 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT--------------------CHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc--------------------cHHHHHHH
Confidence 99999888875100 0288888888888 89999999999999998884 56788889
Q ss_pred HHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 007648 522 VDLEESLGNLESTRAVYERILDLRIATPQIIINYALLL 559 (594)
Q Consensus 522 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~ 559 (594)
+.++.+.|++++|...|+++++++|+++.++..+....
T Consensus 456 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 493 (514)
T 2gw1_A 456 AQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAE 493 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 99999999999999999999999999999887765444
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=1.2e-26 Score=243.79 Aligned_cols=354 Identities=8% Similarity=-0.036 Sum_probs=254.9
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHH
Q 007648 44 KRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARR 123 (594)
Q Consensus 44 ~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~ 123 (594)
.+...+.+++..+|.++..|...+... ...|++++|+..|++++..+|.++.+|..++.++...|+++.|..
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~--------~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 81 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKL--------LAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALP 81 (450)
T ss_dssp -------------CHHHHHHHHHHHHH--------HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHH--------HHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHH
Confidence 455667777777888888887777665 334778888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHHHHHHHHhcccHHHHHHHHHHhhcCcccc
Q 007648 124 TFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFY 203 (594)
Q Consensus 124 ~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 203 (594)
.|+++++..|.+ ...|..++..+...|++ ++|++.|+++++..|++...
T Consensus 82 ~~~~al~~~p~~--~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~---------------------------- 130 (450)
T 2y4t_A 82 DLTKVIQLKMDF--TAARLQRGHLLLKQGKL-DEAEDDFKKVLKSNPSENEE---------------------------- 130 (450)
T ss_dssp HHHHHHHHCTTC--HHHHHHHHHHHHHTTCH-HHHHHHHHHHHTSCCCHHHH----------------------------
T ss_pred HHHHHHhcCCCc--HHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCChhh----------------------------
Confidence 888888888865 67777777777778887 88888888888887776410
Q ss_pred cccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccc
Q 007648 204 SIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVR 283 (594)
Q Consensus 204 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 283 (594)
...|..+..... ...+...|..+...|++++|...|++++...|...
T Consensus 131 -------~~~~~~l~~~~~--------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 177 (450)
T 2y4t_A 131 -------KEAQSQLIKSDE--------------------------MQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA 177 (450)
T ss_dssp -------HHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred -------HHHHHHHHHHHH--------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 011221111100 12455667777778888888888888888777654
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHH
Q 007648 284 DFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLE 363 (594)
Q Consensus 284 ~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (594)
. ++...+..... . ++...++..|+
T Consensus 178 ~---~~~~l~~~~~~--------~---------------------------------------------g~~~~A~~~~~ 201 (450)
T 2y4t_A 178 E---LRELRAECFIK--------E---------------------------------------------GEPRKAISDLK 201 (450)
T ss_dssp H---HHHHHHHHHHH--------T---------------------------------------------TCGGGGHHHHH
T ss_pred H---HHHHHHHHHHH--------C---------------------------------------------CCHHHHHHHHH
Confidence 2 22222111110 0 01112344455
Q ss_pred hhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHH------------
Q 007648 364 HLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAF------------ 429 (594)
Q Consensus 364 ~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~------------ 429 (594)
+ ++..+|.++.+|..++.++. |++++|+..|++++.. .|. ....|..+
T Consensus 202 ~------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~-----~~~~~~~~~~~~~~~~~~~~ 263 (450)
T 2y4t_A 202 A------------ASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-DQD-----HKRCFAHYKQVKKLNKLIES 263 (450)
T ss_dssp H------------HHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT-----CHHHHHHHHHHHHHHHHHHH
T ss_pred H------------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC-----hHHHHHHHHHHHHHHHHHHH
Confidence 5 35667888888888877764 7888899999998875 342 34455444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhH
Q 007648 430 AKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQM 509 (594)
Q Consensus 430 a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 509 (594)
|..+...|++++|+..|+++++..|+++.....++..++.++.+.|++++|...++++++..|+
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~---------------- 327 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD---------------- 327 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT----------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----------------
Confidence 8889999999999999999999999998655568899999999999999999999999999995
Q ss_pred HhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhc
Q 007648 510 KLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWT 563 (594)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g 563 (594)
++.+|..++.++...|++++|...|+++++++|+++.++..++.+....+
T Consensus 328 ----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 377 (450)
T 2y4t_A 328 ----NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK 377 (450)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhh
Confidence 67899999999999999999999999999999999999999997755443
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.96 E-value=2.7e-27 Score=254.55 Aligned_cols=432 Identities=10% Similarity=0.020 Sum_probs=295.7
Q ss_pred CHHHHHHHHHHH-HcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHH
Q 007648 26 SLKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRI 104 (594)
Q Consensus 26 ~~~~w~~~~~~~-~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~l 104 (594)
..+.|...+... ..|++++|...|+++++.+|.++.+|...+... ...|++++|+..|++++..+|+++..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~--------~~~g~~~~A~~~~~~al~~~p~~~~~ 95 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACY--------ISTGDLEKVIEFTTKALEIKPDHSKA 95 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHH--------HHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH--------HHcCCHHHHHHHHHHHHhcCCchHHH
Confidence 456777777744 589999999999999999999999999888776 34589999999999999999999999
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHH------HHHH
Q 007648 105 WIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIE------DFIE 178 (594)
Q Consensus 105 w~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~------~~~~ 178 (594)
|..++.++...|+++.|...|+ ++...|... ..+.. .....+.. ..|...+++++...|.... ....
T Consensus 96 ~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~--~~~~~---~~~~~~~~-~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 168 (537)
T 3fp2_A 96 LLRRASANESLGNFTDAMFDLS-VLSLNGDFD--GASIE---PMLERNLN-KQAMKVLNENLSKDEGRGSQVLPSNTSLA 168 (537)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-HHC----------------CHHHHHHH-HHHHHHHHHHCC-------CCCCCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCC--hHHHH---HHHHHHHH-HHHHHHHHHHHHhCccccccccchHhHHH
Confidence 9999999999999999999995 888888642 22211 11111223 6788889888887665432 1112
Q ss_pred HHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHH-----HHHHhhcccccccCcHHHHHHHHHhhccch------
Q 007648 179 FLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLEL-----CDLLTTHATEISGLNVDAIIRGGIRKFTDE------ 247 (594)
Q Consensus 179 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~------ 247 (594)
.+....+.+.+...+.+.......... .......+ ..+....++ ...+..++++++...|++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~a~~~---~~~A~~~~~~~l~~~p~~~~~~~~ 241 (537)
T 3fp2_A 169 SFFGIFDSHLEVSSVNTSSNYDTAYAL----LSDALQRLYSATDEGYLVANDL---LTKSTDMYHSLLSANTVDDPLREN 241 (537)
T ss_dssp HHHHTSCHHHHHHTSCCCCSSCSSHHH----HHHHHHHHHTCSHHHHHHHHHH---HHHHHHHHHHHHC--CCCHHHHHH
T ss_pred HHHHhcChHHHHHHHhhccccccHHHH----HHHHHHHHHHhhhhhhHHHHHH---HHHHHHHHHHHHHHCCCcchhhHH
Confidence 222222322222222111100000000 00000000 000000000 001223444555555443
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhh
Q 007648 248 VGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDED 327 (594)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 327 (594)
...++..+|.++...|++++|...|++++...|+ . ..+...... ...
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~---~~~~~l~~~--------~~~--------------------- 288 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-P---NSYIFLALT--------LAD--------------------- 288 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-H---HHHHHHHHH--------TCC---------------------
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-c---hHHHHHHHH--------HHH---------------------
Confidence 1346888899999999999999999999999887 3 222211111 000
Q ss_pred hHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CCchhHHHH
Q 007648 328 IRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILT 405 (594)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~ 405 (594)
.++...+...|++ ++..+|+++.+|..++.++. |++++|+..
T Consensus 289 ------------------------~~~~~~A~~~~~~------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 289 ------------------------KENSQEFFKFFQK------------AVDLNPEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp ------------------------SSCCHHHHHHHHH------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------------------hcCHHHHHHHHHH------------HhccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 1123345566777 47889999999999998874 899999999
Q ss_pred HHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHH
Q 007648 406 YTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMR 485 (594)
Q Consensus 406 y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 485 (594)
|++++... |. ...+|..+|.++...|++++|+.+|+++++..|+++ .+|..+|.++...|++++|+..|+
T Consensus 333 ~~~a~~~~-~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 333 FQKAQSLN-PE-----NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP----EVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp HHHHHHHC-TT-----CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhC-CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999964 42 468999999999999999999999999999999999 899999999999999999999999
Q ss_pred HHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHh----------CChHHHHHHHHHHHhccCCchHHHHHH
Q 007648 486 RATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESL----------GNLESTRAVYERILDLRIATPQIIINY 555 (594)
Q Consensus 486 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~A~~~~~~al~~~P~~~~~~~~~ 555 (594)
++++..|++.. .+.....+...+.++... |++++|+..|+++++.+|+++.++.++
T Consensus 403 ~a~~~~~~~~~--------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 468 (537)
T 3fp2_A 403 IAKRLEEVQEK--------------IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGL 468 (537)
T ss_dssp HHHHHHHHCSS--------------CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHcCCcchh--------------hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999885210 000112345566777777 999999999999999999999999999
Q ss_pred HHHHHHhchhhhhhhcc
Q 007648 556 ALLLEVWTLLHVFLLHV 572 (594)
Q Consensus 556 ~~~~~~~g~~~~a~~~~ 572 (594)
+.++...|++++|+..+
T Consensus 469 ~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 469 AQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHH
Confidence 99999999988887443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.96 E-value=5e-26 Score=230.71 Aligned_cols=118 Identities=6% Similarity=-0.075 Sum_probs=107.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChh
Q 007648 427 VAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEP 506 (594)
Q Consensus 427 ~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 506 (594)
+..|.++...|++++|+..|+++++..|+++.....++..++.++...|++++|...|+++++..|+
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------------- 304 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD------------- 304 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-------------
Confidence 4557788899999999999999999999998666667888999999999999999999999999995
Q ss_pred hhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhch
Q 007648 507 VQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTL 564 (594)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~ 564 (594)
++.+|..++.++...|++++|...|+++++++|+++.++..++.+....+.
T Consensus 305 -------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 305 -------NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred -------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999998876554
No 15
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.2e-26 Score=242.88 Aligned_cols=403 Identities=10% Similarity=-0.006 Sum_probs=292.7
Q ss_pred HHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHH
Q 007648 61 KLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRI 140 (594)
Q Consensus 61 ~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~ 140 (594)
+.|...+... ...|++++|+..|++++..+| ++.+|..++.++...|+++.|...|+++++..|.+ ...
T Consensus 7 ~~~~~~g~~~--------~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~ 75 (514)
T 2gw1_A 7 LALKDKGNQF--------FRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY--SKV 75 (514)
T ss_dssp HHHHHHHHHH--------HHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC--HHH
T ss_pred HHHHHHHHHH--------HHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH--HHH
Confidence 4455555444 345899999999999999999 69999999999999999999999999999999986 788
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHH---HHHHHHhcccHHHHHHHH---HHh------------------
Q 007648 141 WEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIED---FIEFLVKSKLWQEAAERL---ASV------------------ 196 (594)
Q Consensus 141 w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~---~~~~~~~~~~~~~a~~~~---~~~------------------ 196 (594)
|..++..+...|++ ++|+..|++++...|.+... .............+...+ +.+
T Consensus 76 ~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (514)
T 2gw1_A 76 LLRRASANEGLGKF-ADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK 154 (514)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHHHHHHHhhH-HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhh
Confidence 99999999999999 99999999999999866531 111111111111111111 000
Q ss_pred ----------------hc-Cccccc-ccccchHHHHHHHHHHHh--hcccccccCcHHHHHHHHHh-----h--c-----
Q 007648 197 ----------------LN-DDQFYS-IKGKTKHRLWLELCDLLT--THATEISGLNVDAIIRGGIR-----K--F----- 244 (594)
Q Consensus 197 ----------------~~-~~~~~~-~~~~~~~~~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~--~----- 244 (594)
.. .+.... ..+......+..-...+. ..++. ..+...+++++. . .
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~~~ 231 (514)
T 2gw1_A 155 QENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESY---DKADESFTKAARLFEEQLDKNNEDEK 231 (514)
T ss_dssp --CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHH---HHHHHHHHHHHHHHHHHTTTSTTCHH
T ss_pred ccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccH---HHHHHHHHHHHHHhhhhhccCccccc
Confidence 00 000000 000001111111111111 01110 123345566655 2 1
Q ss_pred --cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCC
Q 007648 245 --TDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGS 322 (594)
Q Consensus 245 --p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (594)
|. ...+|..+|..+...|++++|...|++++...|+ . ..+...+..... .++
T Consensus 232 ~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~---~~~~~l~~~~~~--------~~~------------- 285 (514)
T 2gw1_A 232 LKEK-LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-V---NSYIYMALIMAD--------RND------------- 285 (514)
T ss_dssp HHHH-HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-H---HHHHHHHHHHHT--------SSC-------------
T ss_pred cChH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-H---HHHHHHHHHHHH--------CCC-------------
Confidence 32 2678999999999999999999999999999887 3 233222221110 111
Q ss_pred cchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CCch
Q 007648 323 AEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPT 400 (594)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~ 400 (594)
...+...+++ ++..+|.+..+|..++.++. |+++
T Consensus 286 --------------------------------~~~A~~~~~~------------~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 286 --------------------------------STEYYNYFDK------------ALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp --------------------------------CTTGGGHHHH------------HHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred --------------------------------HHHHHHHHHH------------HhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 1112334555 47789999999999988874 8999
Q ss_pred hHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHH
Q 007648 401 KQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGA 480 (594)
Q Consensus 401 ~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A 480 (594)
+|+..|++++... |. ...+|..+|.++...|++++|+..|+++++..|+++ .+|..+|.++...|++++|
T Consensus 322 ~A~~~~~~~~~~~-~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PE-----NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAP----EVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHHHHHHHHHHTC-SS-----CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCS----HHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-hh-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCH----HHHHHHHHHHHHCCCHHHH
Confidence 9999999999864 42 568999999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHH---hCChHHHHHHHHHHHhccCCchHHHHHHHH
Q 007648 481 LELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEES---LGNLESTRAVYERILDLRIATPQIIINYAL 557 (594)
Q Consensus 481 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~A~~~~~~al~~~P~~~~~~~~~~~ 557 (594)
...|+++++..|++. ........|..++.++.. .|++++|...++++++..|+++.++..++.
T Consensus 392 ~~~~~~a~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 457 (514)
T 2gw1_A 392 LKQYDLAIELENKLD--------------GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQ 457 (514)
T ss_dssp HHHHHHHHHHHHTSS--------------SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhhccc--------------hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 999999999888411 000012488999999999 999999999999999999999999999999
Q ss_pred HHHHhchhhhhhhcc
Q 007648 558 LLEVWTLLHVFLLHV 572 (594)
Q Consensus 558 ~~~~~g~~~~a~~~~ 572 (594)
++...|++++|+..+
T Consensus 458 ~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 458 MKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHhcCHHHHHHHH
Confidence 999999999987443
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=4.6e-25 Score=237.14 Aligned_cols=428 Identities=12% Similarity=0.066 Sum_probs=281.3
Q ss_pred CCCcchHhHHHHhhCCCCHHHHHHHHHHH-HcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHH
Q 007648 9 PSEDDLLYEEELLRNPFSLKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETL 87 (594)
Q Consensus 9 ~~~~~~~~e~~l~~~P~~~~~w~~~~~~~-~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A 87 (594)
.+++...|+.++..+|.+...|..++... ..|++++|...|+++++.+|.++..|...+... ...|++++|
T Consensus 41 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~--------~~~g~~~~A 112 (537)
T 3fp2_A 41 FNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN--------ESLGNFTDA 112 (537)
T ss_dssp CC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH--------HHHTCHHHH
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH--------HHcCCHHHH
Confidence 35677889999999999999999999955 589999999999999999999999999888776 344899999
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHHHHcCCchHHHHHH
Q 007648 88 NNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQ------HDRIWEIYLRFVEQEGIPIETSLRV 161 (594)
Q Consensus 88 ~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~------~~~~w~~~~~~~~~~~~~~~~a~~~ 161 (594)
...|+ ++..+|+....++. .....+....|...+++++...|... ...++. + ...... ..+...
T Consensus 113 ~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----~-~~~~~~-~~~~~~ 182 (537)
T 3fp2_A 113 MFDLS-VLSLNGDFDGASIE---PMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----F-FGIFDS-HLEVSS 182 (537)
T ss_dssp HHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH----H-HHTSCH-HHHHHT
T ss_pred HHHHH-HHhcCCCCChHHHH---HHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH----H-HHhcCh-HHHHHH
Confidence 99995 99888887776543 44455667889999999988755421 011111 0 111112 222222
Q ss_pred HHHHHhhCCCCHH---HHHH--------HHHhcccHHHHHHHHHHhhc-CcccccccccchHHHHHHHHHHHhhcccccc
Q 007648 162 YRRYLKYDPSHIE---DFIE--------FLVKSKLWQEAAERLASVLN-DDQFYSIKGKTKHRLWLELCDLLTTHATEIS 229 (594)
Q Consensus 162 ~~~~l~~~p~~~~---~~~~--------~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 229 (594)
+.+.....|.... .+.. +....+++++|...|++++. +|..... .......|.....+....++.
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~-~~~~~~~~~~~g~~~~~~~~~-- 259 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL-RENAALALCYTGIFHFLKNNL-- 259 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHH-HHHHHHHHHHHHHHHHHTTCH--
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchh-hHHHHHHHHHHHHHHHhcccH--
Confidence 2222222222111 1111 11122344455555554442 1111000 000011122222222211110
Q ss_pred cCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCC
Q 007648 230 GLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDL 309 (594)
Q Consensus 230 ~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~ 309 (594)
..+...+++++...|+ ...|..+|..+...|++++|...|++++...|.... .+.........
T Consensus 260 -~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~----------- 322 (537)
T 3fp2_A 260 -LDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPP---TYYHRGQMYFI----------- 322 (537)
T ss_dssp -HHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHH-----------
T ss_pred -HHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH---HHHHHHHHHHh-----------
Confidence 1123444555555565 578999999999999999999999999999887652 23222221111
Q ss_pred CCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHH
Q 007648 310 SVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWH 389 (594)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~ 389 (594)
.+....+...|++ ++..+|++..+|.
T Consensus 323 ------------------------------------------~~~~~~A~~~~~~------------a~~~~~~~~~~~~ 348 (537)
T 3fp2_A 323 ------------------------------------------LQDYKNAKEDFQK------------AQSLNPENVYPYI 348 (537)
T ss_dssp ------------------------------------------TTCHHHHHHHHHH------------HHHHCTTCSHHHH
T ss_pred ------------------------------------------cCCHHHHHHHHHH------------HHHhCCCCHHHHH
Confidence 1234445667777 4778999999999
Q ss_pred HHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHH--HHH
Q 007648 390 RRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLAS--IWC 465 (594)
Q Consensus 390 ~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~--~~~ 465 (594)
.++.++. |++++|...|++++...|. .+.+|..+|.++...|++++|+..|+++++..|+++..... .++
T Consensus 349 ~la~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 422 (537)
T 3fp2_A 349 QLACLLYKQGKFTESEAFFNETKLKFPT------LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI 422 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 9988874 8999999999999996433 57899999999999999999999999999988877633222 245
Q ss_pred HHHHHHHhc----------CChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHH
Q 007648 466 EWAEMELRH----------KNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTR 535 (594)
Q Consensus 466 ~~~~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 535 (594)
..+.++.+. |++++|+..|+++++..|+ ++.+|..++.++...|++++|+
T Consensus 423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~--------------------~~~~~~~l~~~~~~~g~~~~A~ 482 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR--------------------SEQAKIGLAQLKLQMEKIDEAI 482 (537)
T ss_dssp HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT--------------------CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC--------------------CHHHHHHHHHHHHHhccHHHHH
Confidence 556677777 9999999999999999995 5688999999999999999999
Q ss_pred HHHHHHHhccCCchHHHHH
Q 007648 536 AVYERILDLRIATPQIIIN 554 (594)
Q Consensus 536 ~~~~~al~~~P~~~~~~~~ 554 (594)
..|+++++++|+++.....
T Consensus 483 ~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 483 ELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHHHHHC--CHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHH
Confidence 9999999999999887553
No 17
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.94 E-value=6.4e-24 Score=215.14 Aligned_cols=311 Identities=10% Similarity=0.014 Sum_probs=244.4
Q ss_pred ChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHH
Q 007648 59 SYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHD 138 (594)
Q Consensus 59 s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~ 138 (594)
+++.|...+... ...|++++|...|++++..+|.++.+|..++.++...|+++.|...|+++++..|.+ .
T Consensus 2 ~~~~~~~~~~~~--------~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~ 71 (359)
T 3ieg_A 2 DVEKHLELGKKL--------LAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF--T 71 (359)
T ss_dssp HHHHHHHHHHHH--------HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--H
T ss_pred cHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc--c
Confidence 355666666555 345889999999999999999999999999999999999999999999999988875 6
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHhhCC---CCHHHHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHH
Q 007648 139 RIWEIYLRFVEQEGIPIETSLRVYRRYLKYDP---SHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWL 215 (594)
Q Consensus 139 ~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~ 215 (594)
..|..++.+....|++ ++|+..|+++++..| ++... |.
T Consensus 72 ~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~--------------------------------------~~ 112 (359)
T 3ieg_A 72 AARLQRGHLLLKQGKL-DEAEDDFKKVLKSNPSEQEEKEA--------------------------------------ES 112 (359)
T ss_dssp HHHHHHHHHHHHHTCH-HHHHHHHHHHHTSCCCHHHHHHH--------------------------------------HH
T ss_pred hHHHHHHHHHHHcCCh-HHHHHHHHHHHhcCCcccChHHH--------------------------------------HH
Confidence 7888888888888888 899999999888888 43321 11
Q ss_pred HHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHH
Q 007648 216 ELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQF 295 (594)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~ 295 (594)
.+..+.. ...+...|..+...|++++|...|++++...|...
T Consensus 113 ~l~~~~~--------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------------ 154 (359)
T 3ieg_A 113 QLVKADE--------------------------MQRLRSQALDAFDGADYTAAITFLDKILEVCVWDA------------ 154 (359)
T ss_dssp HHHHHHH--------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------------
T ss_pred HHHHHHH--------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch------------
Confidence 1110000 23456677788888888888888888877665443
Q ss_pred HHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhh
Q 007648 296 EEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANS 375 (594)
Q Consensus 296 e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (594)
T Consensus 155 -------------------------------------------------------------------------------- 154 (359)
T 3ieg_A 155 -------------------------------------------------------------------------------- 154 (359)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhccCCCChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 007648 376 VLLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVN 453 (594)
Q Consensus 376 ~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~ 453 (594)
.+|..++.++ .|++++|...|++++... |. .+.+|..+|.++...|++++|+..|+++++..
T Consensus 155 ----------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 218 (359)
T 3ieg_A 155 ----------ELRELRAECFIKEGEPRKAISDLKAASKLK-SD-----NTEAFYKISTLYYQLGDHELSLSEVRECLKLD 218 (359)
T ss_dssp ----------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SC-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 2222222222 277888999999999863 42 57899999999999999999999999999999
Q ss_pred CCChhhHHHHHHH------------HHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHH
Q 007648 454 YKTVDHLASIWCE------------WAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFY 521 (594)
Q Consensus 454 p~~~~~~~~~~~~------------~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (594)
|+++ ..|.. .+..+.+.|++++|...++++++..|++.. ....++..+
T Consensus 219 ~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------------~~~~~~~~l 278 (359)
T 3ieg_A 219 QDHK----RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAE----------------YTVRSKERI 278 (359)
T ss_dssp TTCH----HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHH----------------HHHHHHHHH
T ss_pred ccch----HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH----------------HHHHHHHHH
Confidence 9998 54433 366788899999999999999999995210 012456778
Q ss_pred HHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhhhcc
Q 007648 522 VDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFLLHV 572 (594)
Q Consensus 522 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~~~~ 572 (594)
+.++...|++++|...|+++++.+|+++.+|.++|.++...|++++|+.++
T Consensus 279 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 329 (359)
T 3ieg_A 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDY 329 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999997544
No 18
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.94 E-value=1.7e-24 Score=229.05 Aligned_cols=372 Identities=12% Similarity=0.067 Sum_probs=259.5
Q ss_pred cC-ChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccc
Q 007648 39 EA-PFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKF 117 (594)
Q Consensus 39 ~~-~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~ 117 (594)
.| +++.||.+|++++..+|. ++++.++.+|+||+...| |+++|..|+.+..+.++
T Consensus 7 ~~~~i~~aR~vyer~l~~~P~-----------------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~ 62 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLYMS-----------------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQ 62 (493)
T ss_dssp -----CCHHHHHHHHHHHHHT-----------------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC-
T ss_pred cCcchHHHHHHHHHHHHHCCC-----------------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCc
Confidence 46 589999999999999996 346899999999999999 89999999999998774
Q ss_pred -HHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHH----cCCchHHHHHHHHHHHhhCCCCHHH----HHHHHHhcccHH
Q 007648 118 -ITKARRTFDRALCALP-VTQHDRIWEIYLRFVEQ----EGIPIETSLRVYRRYLKYDPSHIED----FIEFLVKSKLWQ 187 (594)
Q Consensus 118 -~~~A~~~~~ral~~~p-~~~~~~~w~~~~~~~~~----~~~~~~~a~~~~~~~l~~~p~~~~~----~~~~~~~~~~~~ 187 (594)
.+.++.+|++|+...+ ...++.+|..|+.|+.. .++. +.++++|++++...+.+.+. |..+....+ ..
T Consensus 63 ~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~-~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~-~~ 140 (493)
T 2uy1_A 63 KKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI-EKIRNGYMRALQTPMGSLSELWKDFENFELELN-KI 140 (493)
T ss_dssp ---CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH-HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-HH
T ss_pred hHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH-HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhc-cc
Confidence 5778999999999743 22237999999999642 2344 78999999999864344332 222222211 11
Q ss_pred HHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc---
Q 007648 188 EAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRREL--- 264 (594)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~--- 264 (594)
.+..+..... |. + ..+.++++.+....+....++|..+.++....+.
T Consensus 141 ~~~~~~~~~~--~~------------------y----------~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~ 190 (493)
T 2uy1_A 141 TGKKIVGDTL--PI------------------F----------QSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLG 190 (493)
T ss_dssp HHHHHHHHHH--HH------------------H----------HHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCC
T ss_pred cHHHHHHHHh--HH------------------H----------HHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCc
Confidence 2222211111 00 0 0011223333222222114589999999875421
Q ss_pred ----HHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHH
Q 007648 265 ----FEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFV 340 (594)
Q Consensus 265 ----~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (594)
.+.+..+|++++...|..+ .+|..|+.++...
T Consensus 191 ~~~~~~Rv~~~ye~al~~~p~~~---~lW~~ya~~~~~~----------------------------------------- 226 (493)
T 2uy1_A 191 GRPHESRMHFIHNYILDSFYYAE---EVYFFYSEYLIGI----------------------------------------- 226 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCH---HHHHHHHHHHHHT-----------------------------------------
T ss_pred chhhHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHc-----------------------------------------
Confidence 4567899999999988775 6888888877541
Q ss_pred HhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhcCCchhHHHHHHHHHhc---cCC--
Q 007648 341 KKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRT---VDP-- 415 (594)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~y~~Ai~~---~~~-- 415 (594)
+++..++..|+++ +.. |.+...|+.++.+..- ++. +++.... ...
T Consensus 227 ------------~~~~~ar~i~erA------------i~~-P~~~~l~~~y~~~~e~--~~~---~~~l~~~~~~~~~~~ 276 (493)
T 2uy1_A 227 ------------GQKEKAKKVVERG------------IEM-SDGMFLSLYYGLVMDE--EAV---YGDLKRKYSMGEAES 276 (493)
T ss_dssp ------------TCHHHHHHHHHHH------------HHH-CCSSHHHHHHHHHTTC--THH---HHHHHHHTC------
T ss_pred ------------CCHHHHHHHHHHH------------HhC-CCcHHHHHHHHhhcch--hHH---HHHHHHHHHhhccch
Confidence 1234466778884 666 9999999988877431 111 2222211 000
Q ss_pred -C-cccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhcCCc
Q 007648 416 -M-KAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK-NFKGALELMRRATAEPS 492 (594)
Q Consensus 416 -~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p 492 (594)
. ........+|+.|+.++.+.++.++||.+|++| +..+... .+|+.++.++.+.+ +.+.|+.+|++|++..|
T Consensus 277 ~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~----~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~ 351 (493)
T 2uy1_A 277 AEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGP----HVFIYCAFIEYYATGSRATPYNIFSSGLLKHP 351 (493)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCH----HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT
T ss_pred hhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCCh----HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC
Confidence 0 000114589999999999888999999999999 5444444 79999999998766 69999999999999888
Q ss_pred hhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhh
Q 007648 493 VEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFL 569 (594)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~ 569 (594)
+ ++.+|..|++++.+.|+.+.||.+|+++ +....+|..|..++...|+.+.+.
T Consensus 352 ~--------------------~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 352 D--------------------STLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp T--------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHH
T ss_pred C--------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHH
Confidence 4 5788999999999999999999999998 457899999999999999877663
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.93 E-value=7e-24 Score=212.48 Aligned_cols=297 Identities=10% Similarity=0.034 Sum_probs=209.8
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 007648 51 RALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALC 130 (594)
Q Consensus 51 ~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~ 130 (594)
..+...|.+++++...+... ...|++++|..+|+++++.+|.++..+..++.++...|++++|...++++++
T Consensus 13 ~~~~~~~~~~~~~~~~a~~~--------~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 84 (330)
T 3hym_B 13 ESVDGLQENLDVVVSLAERH--------YYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD 84 (330)
T ss_dssp -------CCCTTHHHHHHHH--------HHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhchhhHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44445555666665555544 2236666666666666666666666666666666666666666666666666
Q ss_pred hCCCCCHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHhhCCCCHHHHHHHHHhcccHHHHHHHHHHhhcCcccccccccc
Q 007648 131 ALPVTQHDRIWEIYLRFVEQEG-IPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKT 209 (594)
Q Consensus 131 ~~p~~~~~~~w~~~~~~~~~~~-~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 209 (594)
..|.+ ...|..++......| ++ ++|+..|+++++.+|.+
T Consensus 85 ~~~~~--~~~~~~l~~~~~~~~~~~-~~A~~~~~~a~~~~~~~------------------------------------- 124 (330)
T 3hym_B 85 LYPSN--PVSWFAVGCYYLMVGHKN-EHARRYLSKATTLEKTY------------------------------------- 124 (330)
T ss_dssp HCTTS--THHHHHHHHHHHHSCSCH-HHHHHHHHHHHTTCTTC-------------------------------------
T ss_pred hCcCC--HHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHhCCcc-------------------------------------
Confidence 66654 455555555555555 55 55666555555554443
Q ss_pred hHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHH
Q 007648 210 KHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIF 289 (594)
Q Consensus 210 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~ 289 (594)
...|..+|..+...|++++|...|++++...|....
T Consensus 125 ---------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----- 160 (330)
T 3hym_B 125 ---------------------------------------GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHL----- 160 (330)
T ss_dssp ---------------------------------------THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSH-----
T ss_pred ---------------------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHH-----
Confidence 246788888888999999999999998887766442
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhc
Q 007648 290 DSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRR 369 (594)
Q Consensus 290 ~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (594)
T Consensus 161 -------------------------------------------------------------------------------- 160 (330)
T 3hym_B 161 -------------------------------------------------------------------------------- 160 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhccCCCChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 007648 370 PELANSVLLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFD 447 (594)
Q Consensus 370 ~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 447 (594)
.|..++.++ .|++++|...|++++... |. .+.+|..+|.++...|++++|...++
T Consensus 161 -----------------~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~ 217 (330)
T 3hym_B 161 -----------------PMLYIGLEYGLTNNSKLAERFFSQALSIA-PE-----DPFVMHEVGVVAFQNGEWKTAEKWFL 217 (330)
T ss_dssp -----------------HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TT-----CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CC-----ChHHHHHHHHHHHHcccHHHHHHHHH
Confidence 111111111 266777888888888753 32 56888889999989999999999999
Q ss_pred HHHhcc---------CCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhH
Q 007648 448 KAVQVN---------YKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLW 518 (594)
Q Consensus 448 kal~~~---------p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (594)
++++.. |..+ .+|..+|.++...|++++|...|+++++..|+ ++..|
T Consensus 218 ~a~~~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--------------------~~~~~ 273 (330)
T 3hym_B 218 DALEKIKAIGNEVTVDKWE----PLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ--------------------NASTY 273 (330)
T ss_dssp HHHHHHTTTSCSCTTTTCC----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------------------CSHHH
T ss_pred HHHHHhhhccccccccHHH----HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc--------------------chHHH
Confidence 999875 5556 78888999888899999999999999998884 55788
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHH-HHhchhh
Q 007648 519 TFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLL-EVWTLLH 566 (594)
Q Consensus 519 ~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~-~~~g~~~ 566 (594)
..++.++...|++++|...|+++++++|+++.++..++.++ ...|+.+
T Consensus 274 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 274 SAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 88899999999999999999999999999999999999887 4555543
No 20
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=5.4e-23 Score=217.51 Aligned_cols=387 Identities=11% Similarity=0.013 Sum_probs=242.7
Q ss_pred HHHHHHHHHH-HcCChhHHHHHHHHHHHh---------CCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHh
Q 007648 28 KLWWRYLVAK-REAPFKKRFVIYERALKA---------LPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVT 97 (594)
Q Consensus 28 ~~w~~~~~~~-~~~~~~~a~~~~e~al~~---------~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 97 (594)
..+..++... ..|++++|.+.|++|++. +|.....|..++... ...|++++|...|++++++
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y--------~~~g~~~~A~~~~~ka~~i 123 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVY--------YHMGRLSDVQIYVDKVKHV 123 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHH--------HHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHH--------HHcCChHHHHHHHHHHHHH
Confidence 4444444433 479999999999999986 566777777766554 3459999999999999987
Q ss_pred c--------CCChHHHHHHHHHHHh--cccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH---HHcCCchHHHHHHHHH
Q 007648 98 M--------HKMPRIWIMYLETLTS--QKFITKARRTFDRALCALPVTQHDRIWEIYLRFV---EQEGIPIETSLRVYRR 164 (594)
Q Consensus 98 ~--------P~~~~lw~~y~~~~~~--~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~---~~~~~~~~~a~~~~~~ 164 (594)
. |..+.++...+..+.. .+++++|...|++|++..|.+ ...+..++... ...+.. ++|++.|++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~--~~~~~~~~~~~~~l~~~~~~-~~al~~~~~ 200 (472)
T 4g1t_A 124 CEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN--PEFTSGLAIASYRLDNWPPS-QNAIDPLRQ 200 (472)
T ss_dssp HHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHHHSCCC-CCTHHHHHH
T ss_pred hHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCchHH-HHHHHHHHH
Confidence 4 4567788777766655 457999999999999999986 67777666553 345777 889999999
Q ss_pred HHhhCCCCHHHHHHH-------HHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHH
Q 007648 165 YLKYDPSHIEDFIEF-------LVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAII 237 (594)
Q Consensus 165 ~l~~~p~~~~~~~~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 237 (594)
+++.+|++...+..+ +...+++++|.+.|++++
T Consensus 201 al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al---------------------------------------- 240 (472)
T 4g1t_A 201 AIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEAL---------------------------------------- 240 (472)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHH----------------------------------------
T ss_pred HhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH----------------------------------------
Confidence 999999998643322 122345555555555443
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccc
Q 007648 238 RGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDD 317 (594)
Q Consensus 238 ~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~ 317 (594)
...|+. ..++..+|.++...|++++|...|++++...|+... ++........................
T Consensus 241 ----~~~~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~lg~~y~~~~~~~~~~~~~~~~~---- 308 (472)
T 4g1t_A 241 ----EKAPGV-TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAY---LHCQIGCCYRAKVFQVMNLRENGMYG---- 308 (472)
T ss_dssp ----HHCSSC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---HHHHHHHHHHHHHHHHHHC------C----
T ss_pred ----HhCccH-HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHH---HHHHHHHHHHHHHHHhhhHHHHHHHH----
Confidence 344443 578999999999999999999999999999998763 22222111111100000000000000
Q ss_pred cccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc-
Q 007648 318 EEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE- 396 (594)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~- 396 (594)
... .......+...+++ ++..+|.+..++..+|.++.
T Consensus 309 --------------~~~----------------~~~~~~~A~~~~~~------------a~~~~~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 309 --------------KRK----------------LLELIGHAVAHLKK------------ADEANDNLFRVCSILASLHAL 346 (472)
T ss_dssp --------------HHH----------------HHHHHHHHHHHHHH------------HHHHCTTTCCCHHHHHHHHHH
T ss_pred --------------HHH----------------HHhhHHHHHHHHHH------------HhhcCCchhhhhhhHHHHHHH
Confidence 000 01122334455555 46778888888888887764
Q ss_pred -CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHH-hcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhc
Q 007648 397 -GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYE-TYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRH 474 (594)
Q Consensus 397 -~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~ 474 (594)
|++++|+..|++|+...++.. ....++..++.+.. ..|++++|+..|++|+++.|++. ...
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~----~~~---------- 409 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPV---AKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR----EKE---------- 409 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHH---HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH----HHH----------
T ss_pred hccHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH----HHH----------
Confidence 788888888888887533211 02345667776644 67888888888888888888875 211
Q ss_pred CChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHH
Q 007648 475 KNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIIN 554 (594)
Q Consensus 475 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~ 554 (594)
+....+.++++++++.+|+ ++..|..+|.++...|++++|++.|++||++.|.+|.++..
T Consensus 410 ~~~~~l~~~~~~~l~~~p~--------------------~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 410 KMKDKLQKIAKMRLSKNGA--------------------DSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHHHHHHCC---------------------CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHHHHHHHHhCCC--------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 1234556778888888884 56788888999999999999999999999999999888776
Q ss_pred HH
Q 007648 555 YA 556 (594)
Q Consensus 555 ~~ 556 (594)
+|
T Consensus 470 ~G 471 (472)
T 4g1t_A 470 NG 471 (472)
T ss_dssp --
T ss_pred CC
Confidence 65
No 21
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.93 E-value=5.1e-24 Score=212.43 Aligned_cols=247 Identities=15% Similarity=0.234 Sum_probs=192.6
Q ss_pred CCCChHHHHHHHHHHHHhccCCCCCchhH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHh-------cccH------
Q 007648 56 LPGSYKLWHAYLIERLSIVKNLPITHPEY----ETLNNTFERALVTMHKMPRIWIMYLETLTS-------QKFI------ 118 (594)
Q Consensus 56 ~P~s~~lW~~~~~~~~~~~~~~~~~~~~~----~~A~~~~~~al~~~P~~~~lw~~y~~~~~~-------~~~~------ 118 (594)
.|.+..+|..|+.++.+... ..++. ++|+.+|++|+..+|.++.+|..|+.++.. .|++
T Consensus 4 ~~~~~~~W~~yi~~E~~~~~----~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~ 79 (308)
T 2ond_A 4 EAQQVDMWKKYIQWEKSNPL----RTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 79 (308)
T ss_dssp HHHHHHHHHHHHHHHHTCTT----CCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcc----cCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccc
Confidence 35567899999999854311 11222 789999999999999999999999999874 4664
Q ss_pred -HHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHHHHHHHHhcccHHHHHHHHHHh
Q 007648 119 -TKARRTFDRALC-ALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASV 196 (594)
Q Consensus 119 -~~A~~~~~ral~-~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~ 196 (594)
++|+.+|++|++ +.|.+ ..+|..++.++...|+. ++|+++|+++++..|.+.
T Consensus 80 ~~~A~~~~~rAl~~~~p~~--~~~~~~~~~~~~~~~~~-~~A~~~~~~al~~~p~~~----------------------- 133 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKN--MLLYFAYADYEESRMKY-EKVHSIYNRLLAIEDIDP----------------------- 133 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTC--HHHHHHHHHHHHHTTCH-HHHHHHHHHHHTSSSSCT-----------------------
T ss_pred hHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHhcCCH-HHHHHHHHHHHhccccCc-----------------------
Confidence 899999999999 68875 78999999999888888 889999988888776642
Q ss_pred hcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 007648 197 LNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGM 276 (594)
Q Consensus 197 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (594)
..+|..++.++.+.|++++|+++|++++
T Consensus 134 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 161 (308)
T 2ond_A 134 ----------------------------------------------------TLVYIQYMKFARRAEGIKSGRMIFKKAR 161 (308)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred ----------------------------------------------------cHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 1268888888888999999999999998
Q ss_pred hhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHH
Q 007648 277 MTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVD 356 (594)
Q Consensus 277 ~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (594)
...|... .+|...+.++.
T Consensus 162 ~~~p~~~---~~~~~~a~~~~----------------------------------------------------------- 179 (308)
T 2ond_A 162 EDARTRH---HVYVTAALMEY----------------------------------------------------------- 179 (308)
T ss_dssp TSTTCCT---HHHHHHHHHHH-----------------------------------------------------------
T ss_pred hcCCCCH---HHHHHHHHHHH-----------------------------------------------------------
Confidence 8776543 22221111000
Q ss_pred HHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhcCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhc
Q 007648 357 LRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETY 436 (594)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~ 436 (594)
...|++++|+.+|++|++..|. .+.+|..++.++...
T Consensus 180 -------------------------------------~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~ 216 (308)
T 2ond_A 180 -------------------------------------YCSKDKSVAFKIFELGLKKYGD------IPEYVLAYIDYLSHL 216 (308)
T ss_dssp -------------------------------------HTSCCHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHTT
T ss_pred -------------------------------------HHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHC
Confidence 0126677888899999886443 578999999999889
Q ss_pred CCHHHHHHHHHHHHhc---cCC-ChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCch
Q 007648 437 KDIANARVIFDKAVQV---NYK-TVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSV 493 (594)
Q Consensus 437 ~~~~~A~~~~~kal~~---~p~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 493 (594)
|++++|+.+|++|+.. .|+ +. .+|..++.++.+.|++++|+.+++++++..|+
T Consensus 217 g~~~~A~~~~~~al~~~~l~p~~~~----~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 217 NEDNNTRVLFERVLTSGSLPPEKSG----EIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp CCHHHHHHHHHHHHHSSSSCGGGCH----HHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHhccCCCHHHHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 9999999999999985 443 55 78999999998899999999999999999885
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=9.8e-23 Score=204.10 Aligned_cols=307 Identities=12% Similarity=0.024 Sum_probs=232.9
Q ss_pred hHhHHHHhhCCCCHHHHHHHHHHH-HcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHH
Q 007648 14 LLYEEELLRNPFSLKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFE 92 (594)
Q Consensus 14 ~~~e~~l~~~P~~~~~w~~~~~~~-~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 92 (594)
..+...+...|.+.+.+...+... ..|+++.|..+|+++++.+|.++..|..++... ...|++++|...|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~--------~~~~~~~~A~~~~~ 80 (330)
T 3hym_B 9 TVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTL--------VELNKANELFYLSH 80 (330)
T ss_dssp -----------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHH--------HHHTCHHHHHHHHH
T ss_pred hhhHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHH--------HHhhhHHHHHHHHH
Confidence 445577788899999999888854 589999999999999999999999998777665 23488999999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCC
Q 007648 93 RALVTMHKMPRIWIMYLETLTSQK-FITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPS 171 (594)
Q Consensus 93 ~al~~~P~~~~lw~~y~~~~~~~~-~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~ 171 (594)
++++.+|.++.+|..++.++...| +++.|...|+++++..|.. ...|..++......|++ ++|+..|+++++..|.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~-~~A~~~~~~a~~~~~~ 157 (330)
T 3hym_B 81 KLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY--GPAWIAYGHSFAVESEH-DQAMAAYFTAAQLMKG 157 (330)
T ss_dssp HHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTC--THHHHHHHHHHHHHTCH-HHHHHHHHHHHHHTTT
T ss_pred HHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHccCH-HHHHHHHHHHHHhccc
Confidence 999999999999999999999999 9999999999999999976 67888888888888888 8899888888877776
Q ss_pred CHHHHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHH
Q 007648 172 HIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRL 251 (594)
Q Consensus 172 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 251 (594)
+. ..
T Consensus 158 ~~----------------------------------------------------------------------------~~ 161 (330)
T 3hym_B 158 CH----------------------------------------------------------------------------LP 161 (330)
T ss_dssp CS----------------------------------------------------------------------------HH
T ss_pred cH----------------------------------------------------------------------------HH
Confidence 43 24
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhh
Q 007648 252 WTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLD 331 (594)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (594)
+..+|..+...|++++|...|++++...|.+.
T Consensus 162 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~------------------------------------------------ 193 (330)
T 3hym_B 162 MLYIGLEYGLTNNSKLAERFFSQALSIAPEDP------------------------------------------------ 193 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH------------------------------------------------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCh------------------------------------------------
Confidence 55567777777888888877777776655442
Q ss_pred hhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHh--cCCchhHHHHHHHH
Q 007648 332 VNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEA 409 (594)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~y~~A 409 (594)
.+|..++.++ .|++++|...|+++
T Consensus 194 ------------------------------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 194 ------------------------------------------------------FVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp ------------------------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------------------------------------------------------HHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 1111111111 25566677777777
Q ss_pred HhccCCCcc---cCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007648 410 VRTVDPMKA---VGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRR 486 (594)
Q Consensus 410 i~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 486 (594)
+...+.... ....+.+|..+|.++...|++++|+..|+++++..|+++ .+|..++.++...|++++|...|++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~ 295 (330)
T 3hym_B 220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA----STYSAIGYIHSLMGNFENAVDYFHT 295 (330)
T ss_dssp HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCS----HHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccch----HHHHHHHHHHHHhccHHHHHHHHHH
Confidence 764321100 012467899999999999999999999999999999998 8899999999899999999999999
Q ss_pred HhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHH-HHhCChHH
Q 007648 487 ATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLE-ESLGNLES 533 (594)
Q Consensus 487 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~ 533 (594)
+++..|+ ++..|..++..+ ...|+.+.
T Consensus 296 al~~~p~--------------------~~~~~~~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 296 ALGLRRD--------------------DTFSVTMLGHCIEMYIGDSEA 323 (330)
T ss_dssp TTTTCSC--------------------CHHHHHHHHHHHHTTTTC---
T ss_pred HHccCCC--------------------chHHHHHHHHHHHHHhCchhc
Confidence 9999995 557777777765 45665543
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.91 E-value=5.3e-23 Score=209.79 Aligned_cols=301 Identities=13% Similarity=0.071 Sum_probs=232.5
Q ss_pred chhHHHHHH-HHHHHHHhcCCCh----HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCch
Q 007648 81 HPEYETLNN-TFERALVTMHKMP----RIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPI 155 (594)
Q Consensus 81 ~~~~~~A~~-~~~~al~~~P~~~----~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~ 155 (594)
.+++++|.. .|++++...|.++ ..|...+..+...|++++|...|+++++..|.+ ...|..++......|++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~- 114 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH--MEAWQYLGTTQAENEQE- 114 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC--HHHHHHHHHHHHHTTCH-
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCcCH-
Confidence 467788888 8888888887764 458888888888888888999999888888875 67777777777777877
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHH
Q 007648 156 ETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDA 235 (594)
Q Consensus 156 ~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 235 (594)
++|+..|+++++.+|++.
T Consensus 115 ~~A~~~~~~al~~~~~~~-------------------------------------------------------------- 132 (368)
T 1fch_A 115 LLAISALRRCLELKPDNQ-------------------------------------------------------------- 132 (368)
T ss_dssp HHHHHHHHHHHHHCTTCH--------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcCCCCH--------------------------------------------------------------
Confidence 788887777776666542
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccc
Q 007648 236 IIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEE 315 (594)
Q Consensus 236 ~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~ 315 (594)
.+|..+|.++...|++++|...|++++...|...... .........
T Consensus 133 --------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~----------------- 178 (368)
T 1fch_A 133 --------------TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLV---TPAEEGAGG----------------- 178 (368)
T ss_dssp --------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGC---C-------------------------
T ss_pred --------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH---HHHHHHhhh-----------------
Confidence 4677788888899999999999999999887765310 000000000
Q ss_pred cccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHH-
Q 007648 316 DDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKI- 394 (594)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~- 394 (594)
..+.. .+..++.+
T Consensus 179 ----------------------------------------------------------------~~~~~--~~~~~~~~~ 192 (368)
T 1fch_A 179 ----------------------------------------------------------------AGLGP--SKRILGSLL 192 (368)
T ss_dssp -------------------------------------------------------------------------CTTHHHH
T ss_pred ----------------------------------------------------------------hcccH--HHHHHHHHh
Confidence 00000 00001111
Q ss_pred hcCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhc
Q 007648 395 FEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRH 474 (594)
Q Consensus 395 ~~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~ 474 (594)
..|++++|+..|++++... |.. ..+.+|..+|.++...|++++|+..|+++++..|+++ .+|..+|.++...
T Consensus 193 ~~~~~~~A~~~~~~a~~~~-p~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~l~~~~~~~ 264 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLD-PTS---IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY----LLWNKLGATLANG 264 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHS-TTS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT
T ss_pred hcccHHHHHHHHHHHHHhC-cCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH----HHHHHHHHHHHHc
Confidence 2267788999999999864 421 1468899999999999999999999999999999999 8999999999999
Q ss_pred CChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCc------
Q 007648 475 KNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT------ 548 (594)
Q Consensus 475 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~------ 548 (594)
|++++|+..|+++++..|+ ++..|..++.++.+.|++++|+..|++++++.|++
T Consensus 265 g~~~~A~~~~~~al~~~~~--------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 324 (368)
T 1fch_A 265 NQSEEAVAAYRRALELQPG--------------------YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 324 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTT--------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred CCHHHHHHHHHHHHHhCCC--------------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccc
Confidence 9999999999999999995 56889999999999999999999999999999998
Q ss_pred -----hHHHHHHHHHHHHhchhhhhhhcccC
Q 007648 549 -----PQIIINYALLLEVWTLLHVFLLHVPF 574 (594)
Q Consensus 549 -----~~~~~~~~~~~~~~g~~~~a~~~~~~ 574 (594)
+.+|.+++.++...|++++|...+..
T Consensus 325 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 325 GGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 89999999999999999999877663
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.91 E-value=1.9e-22 Score=205.73 Aligned_cols=288 Identities=13% Similarity=0.044 Sum_probs=221.4
Q ss_pred HHHHHHHHHhcCCChH----HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 007648 88 NNTFERALVTMHKMPR----IWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYR 163 (594)
Q Consensus 88 ~~~~~~al~~~P~~~~----lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~ 163 (594)
...+.+++...|.++. .|+..+..+.+.|+++.|...|+++++..|.+ ...|..++..+...|++ ++|+..|+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~-~~A~~~~~ 123 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD--AEAWQFLGITQAENENE-QAAIVALQ 123 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHCCCH-HHHHHHHH
Confidence 3445555555555544 48999999999999999999999999999876 77888888888888888 88888888
Q ss_pred HHHhhCCCCHHHHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhh
Q 007648 164 RYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRK 243 (594)
Q Consensus 164 ~~l~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (594)
++++.+|.+.
T Consensus 124 ~al~~~p~~~---------------------------------------------------------------------- 133 (365)
T 4eqf_A 124 RCLELQPNNL---------------------------------------------------------------------- 133 (365)
T ss_dssp HHHHHCTTCH----------------------------------------------------------------------
T ss_pred HHHhcCCCCH----------------------------------------------------------------------
Confidence 8877766642
Q ss_pred ccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCc
Q 007648 244 FTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSA 323 (594)
Q Consensus 244 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (594)
.+|..+|..+...|++++|...|++++...|+.... +....
T Consensus 134 ------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~------------------------------ 174 (365)
T 4eqf_A 134 ------KALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYL---VKNKK------------------------------ 174 (365)
T ss_dssp ------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC--------------------------------------
T ss_pred ------HHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHH---Hhhhc------------------------------
Confidence 467888888999999999999999999887765421 00000
Q ss_pred chhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHh--cCCchh
Q 007648 324 EDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF--EGNPTK 401 (594)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~ 401 (594)
.....+..++.++ .|++++
T Consensus 175 -----------------------------------------------------------~~~~~~~~l~~~~~~~g~~~~ 195 (365)
T 4eqf_A 175 -----------------------------------------------------------GSPGLTRRMSKSPVDSSVLEG 195 (365)
T ss_dssp -------------------------------------------------------------------------CCHHHHH
T ss_pred -----------------------------------------------------------cchHHHHHHHHHHhhhhhHHH
Confidence 0000011111222 256788
Q ss_pred HHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHH
Q 007648 402 QILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGAL 481 (594)
Q Consensus 402 a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~ 481 (594)
|+..|++++... |.. ..+.+|..+|.++...|++++|+..|+++++..|+++ .+|..+|.++...|++++|+
T Consensus 196 A~~~~~~al~~~-p~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~ 267 (365)
T 4eqf_A 196 VKELYLEAAHQN-GDM---IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDY----SLWNRLGATLANGDRSEEAV 267 (365)
T ss_dssp HHHHHHHHHHHS-CSS---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-cCc---cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHH
Confidence 899999999863 421 1467899999999999999999999999999999998 89999999999999999999
Q ss_pred HHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCC------------ch
Q 007648 482 ELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA------------TP 549 (594)
Q Consensus 482 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~------------~~ 549 (594)
..|+++++..|+ ++..|..++.++...|++++|+..|++++++.|+ ++
T Consensus 268 ~~~~~al~~~p~--------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 327 (365)
T 4eqf_A 268 EAYTRALEIQPG--------------------FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISG 327 (365)
T ss_dssp HHHHHHHHHCTT--------------------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------C
T ss_pred HHHHHHHhcCCC--------------------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHH
Confidence 999999999995 5688999999999999999999999999999887 46
Q ss_pred HHHHHHHHHHHHhchhhhhhhcccC
Q 007648 550 QIIINYALLLEVWTLLHVFLLHVPF 574 (594)
Q Consensus 550 ~~~~~~~~~~~~~g~~~~a~~~~~~ 574 (594)
.+|.+++.++...|+.+.+....+.
T Consensus 328 ~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 328 NIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8899999999999999888765554
No 25
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=8.1e-22 Score=196.48 Aligned_cols=243 Identities=14% Similarity=0.191 Sum_probs=201.2
Q ss_pred hHHHHHHHHHHHhhccccccc-----CcHHHHHHHHHhhccchhHHHHHHHHHHHHH-------hccH-------HHHHH
Q 007648 210 KHRLWLELCDLLTTHATEISG-----LNVDAIIRGGIRKFTDEVGRLWTSLADYYIR-------RELF-------EKARD 270 (594)
Q Consensus 210 ~~~~w~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~-------~g~~-------~~A~~ 270 (594)
+..+|..|+++++.+|..++. ..+..++++++...|.+ +++|+.+|.++.. .|++ ++|+.
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~-~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHH-PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 467899999999987643322 13446889999999987 7899999999874 4775 89999
Q ss_pred HHHHHHh-hhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccc
Q 007648 271 IFEEGMM-TVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWL 349 (594)
Q Consensus 271 ~~~~al~-~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (594)
+|++|+. ..|+.. .+|..++.++...
T Consensus 86 ~~~rAl~~~~p~~~---~~~~~~~~~~~~~-------------------------------------------------- 112 (308)
T 2ond_A 86 IYERAISTLLKKNM---LLYFAYADYEESR-------------------------------------------------- 112 (308)
T ss_dssp HHHHHHTTTTTTCH---HHHHHHHHHHHHT--------------------------------------------------
T ss_pred HHHHHHHHhCcccH---HHHHHHHHHHHhc--------------------------------------------------
Confidence 9999999 577764 5777777665531
Q ss_pred cchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChH-HHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHH
Q 007648 350 HDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVE-QWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLW 426 (594)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~-~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~ 426 (594)
+....+...|++ ++..+|.+.. +|..++.++. |++++|+.+|++|++.. |. ...+|
T Consensus 113 ---~~~~~A~~~~~~------------al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~-----~~~~~ 171 (308)
T 2ond_A 113 ---MKYEKVHSIYNR------------LLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RT-----RHHVY 171 (308)
T ss_dssp ---TCHHHHHHHHHH------------HHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TC-----CTHHH
T ss_pred ---CCHHHHHHHHHH------------HHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CC-----CHHHH
Confidence 124446677888 4778999987 9999999874 89999999999999863 42 46788
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcC---CchhHhhhhhcc
Q 007648 427 VAFAKLYET-YKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE---PSVEVRRRVAAD 502 (594)
Q Consensus 427 ~~~a~~~~~-~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~ 502 (594)
+..+.++.. .|++++|+.+|+++++.+|+++ .+|..++.++.+.|++++|+.+|+++++. .|+
T Consensus 172 ~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~--------- 238 (308)
T 2ond_A 172 VTAALMEYYCSKDKSVAFKIFELGLKKYGDIP----EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE--------- 238 (308)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG---------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH---------
Confidence 888887664 7999999999999999999999 99999999999999999999999999996 443
Q ss_pred CChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchH
Q 007648 503 GNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550 (594)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~ 550 (594)
++..+|..++.++.+.|+.++|..+++++++.+|+++.
T Consensus 239 ----------~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 239 ----------KSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp ----------GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred ----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc
Confidence 25689999999999999999999999999999998764
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=2.6e-22 Score=204.59 Aligned_cols=316 Identities=14% Similarity=0.093 Sum_probs=236.3
Q ss_pred cCChhHHHH-HHHHHHHhCCCCh----HHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 007648 39 EAPFKKRFV-IYERALKALPGSY----KLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLT 113 (594)
Q Consensus 39 ~~~~~~a~~-~~e~al~~~P~s~----~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~ 113 (594)
.+++++|.. .|+++++..|.++ ..|...+... ...|++++|...|+++++.+|.++.+|..++.++.
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 109 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRR--------LQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA 109 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHH--------HHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHH--------HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 367888888 9999998888764 4576666555 34589999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHHHHHHHHhcccHHHHHHHH
Q 007648 114 SQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERL 193 (594)
Q Consensus 114 ~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~a~~~~ 193 (594)
..|+++.|...|+++++..|.+ ...|..++......|++ ++|++.|++++...|.+...+... +..
T Consensus 110 ~~g~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~----~~~------- 175 (368)
T 1fch_A 110 ENEQELLAISALRRCLELKPDN--QTALMALAVSFTNESLQ-RQACEILRDWLRYTPAYAHLVTPA----EEG------- 175 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTSTTTGGGCC----------------
T ss_pred HCcCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCcCcHHHHHHH----HHH-------
Confidence 9999999999999999999986 78888899999999999 999999999999999875211000 000
Q ss_pred HHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHH
Q 007648 194 ASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFE 273 (594)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~ 273 (594)
. . ...+ ...+..++.++ ..|++++|+..|+
T Consensus 176 ---~-------------------------~------------------~~~~---~~~~~~~~~~~-~~~~~~~A~~~~~ 205 (368)
T 1fch_A 176 ---A-------------------------G------------------GAGL---GPSKRILGSLL-SDSLFLEVKELFL 205 (368)
T ss_dssp -----------------------------------------------------------CTTHHHH-HHHHHHHHHHHHH
T ss_pred ---h-------------------------h------------------hhcc---cHHHHHHHHHh-hcccHHHHHHHHH
Confidence 0 0 0000 11222334444 6677777777777
Q ss_pred HHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchh
Q 007648 274 EGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVK 353 (594)
Q Consensus 274 ~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (594)
+++...|+..
T Consensus 206 ~a~~~~p~~~---------------------------------------------------------------------- 215 (368)
T 1fch_A 206 AAVRLDPTSI---------------------------------------------------------------------- 215 (368)
T ss_dssp HHHHHSTTSC----------------------------------------------------------------------
T ss_pred HHHHhCcCcc----------------------------------------------------------------------
Confidence 7776655421
Q ss_pred hHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHH
Q 007648 354 DVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAK 431 (594)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~ 431 (594)
++.+|..++.++ .|++++|+..|++++... |. .+.+|..+|.
T Consensus 216 ------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~-----~~~~~~~l~~ 259 (368)
T 1fch_A 216 ------------------------------DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN-----DYLLWNKLGA 259 (368)
T ss_dssp ------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----CHHHHHHHHH
T ss_pred ------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC-----CHHHHHHHHH
Confidence 222333333333 378889999999999864 42 5789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHh
Q 007648 432 LYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKL 511 (594)
Q Consensus 432 ~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 511 (594)
++...|++++|+..|+++++..|+++ .+|..+|.++.+.|++++|+..|+++++..|++. +.. ....
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~--~~~~ 326 (368)
T 1fch_A 260 TLANGNQSEEAVAAYRRALELQPGYI----RSRYNLGISCINLGAHREAVEHFLEALNMQRKSR-------GPR--GEGG 326 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---------------CC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC-------Ccc--cccc
Confidence 99999999999999999999999999 8999999999999999999999999999988510 000 0000
Q ss_pred hccHhhHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q 007648 512 HKSLRLWTFYVDLEESLGNLESTRAVYERILDLR 545 (594)
Q Consensus 512 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 545 (594)
...+.+|..++.++..+|++++|..+++++++..
T Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 360 (368)
T 1fch_A 327 AMSENIWSTLRLALSMLGQSDAYGAADARDLSTL 360 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHH
T ss_pred chhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHH
Confidence 0136889999999999999999999999988754
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.89 E-value=1.9e-20 Score=197.96 Aligned_cols=343 Identities=13% Similarity=0.017 Sum_probs=237.9
Q ss_pred chhHHHHHHHHHHHHHh---------cCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC------CCHHHHHHHHH
Q 007648 81 HPEYETLNNTFERALVT---------MHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPV------TQHDRIWEIYL 145 (594)
Q Consensus 81 ~~~~~~A~~~~~~al~~---------~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~------~~~~~~w~~~~ 145 (594)
.|++++|+..|++|+++ +|.....|..+|.++..+|++++|...|+++++..|. .....++...+
T Consensus 64 ~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g 143 (472)
T 4g1t_A 64 KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG 143 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHH
Confidence 58999999999999986 5777889999999999999999999999999987432 11244444433
Q ss_pred HHHH--HcCCchHHHHHHHHHHHhhCCCCHHHHHH---HH---HhcccHHHHHHHHHHhhcCcccccccccchHHHHHHH
Q 007648 146 RFVE--QEGIPIETSLRVYRRYLKYDPSHIEDFIE---FL---VKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLEL 217 (594)
Q Consensus 146 ~~~~--~~~~~~~~a~~~~~~~l~~~p~~~~~~~~---~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 217 (594)
.... ..+++ ++|+..|+++++.+|++++.+.. .+ ...++.++|+..|+
T Consensus 144 ~~~~~~~~~~y-~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~----------------------- 199 (472)
T 4g1t_A 144 WTRLKCGGNQN-ERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLR----------------------- 199 (472)
T ss_dssp HHHHHHCTTHH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHH-----------------------
T ss_pred HHHHHHccccH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHH-----------------------
Confidence 3322 23456 89999999999999999864322 21 12233344444444
Q ss_pred HHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHH----HHHhccHHHHHHHHHHHHhhhccccchHHHHHHHH
Q 007648 218 CDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADY----YIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYS 293 (594)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~----~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~ 293 (594)
+++...|++ ..++..++.. +...|++++|.+.|++++...|.... .+....
T Consensus 200 ---------------------~al~l~p~~-~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~---~~~~lg 254 (472)
T 4g1t_A 200 ---------------------QAIRLNPDN-QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTD---VLRSAA 254 (472)
T ss_dssp ---------------------HHHHHCSSC-HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHH---HHHHHH
T ss_pred ---------------------HHhhcCCcc-hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHH---HHHHHH
Confidence 444444443 3455555544 44567889999999999999887653 222222
Q ss_pred HHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhh
Q 007648 294 QFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELA 373 (594)
Q Consensus 294 ~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (594)
..... .+....++..|++
T Consensus 255 ~~~~~-----------------------------------------------------~~~~~~A~~~~~~--------- 272 (472)
T 4g1t_A 255 KFYRR-----------------------------------------------------KDEPDKAIELLKK--------- 272 (472)
T ss_dssp HHHHH-----------------------------------------------------TTCHHHHHHHHHH---------
T ss_pred HHHHH-----------------------------------------------------cCchHHHHHHHHH---------
Confidence 11111 1234445666777
Q ss_pred hhhhhccCCCChHHHHHHHHHhc---------------------CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHH
Q 007648 374 NSVLLRQNPHNVEQWHRRVKIFE---------------------GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKL 432 (594)
Q Consensus 374 ~~~~l~~~p~~~~~~~~~~~~~~---------------------~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~ 432 (594)
++..+|+++.++..+|.++. +.+++|...|++++.. .|. ...+|..+|.+
T Consensus 273 ---al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~-----~~~~~~~lg~~ 343 (472)
T 4g1t_A 273 ---ALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA-NDN-----LFRVCSILASL 343 (472)
T ss_dssp ---HHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH-CTT-----TCCCHHHHHHH
T ss_pred ---HHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc-CCc-----hhhhhhhHHHH
Confidence 57889999999998887652 1256788889998885 342 45678899999
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH-HhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHh
Q 007648 433 YETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEME-LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKL 511 (594)
Q Consensus 433 ~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 511 (594)
+...|++++|+..|+++++..|++... ..+++.++.+. .+.|++++|+..|++|+++.|.
T Consensus 344 ~~~~~~~~~A~~~~~kaL~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~------------------ 404 (472)
T 4g1t_A 344 HALADQYEEAEYYFQKEFSKELTPVAK-QLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK------------------ 404 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCCCHHHH-HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC------------------
T ss_pred HHHhccHHHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc------------------
Confidence 999999999999999999998876422 24567777654 5789999999999999999994
Q ss_pred hccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhhhcccC
Q 007648 512 HKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFLLHVPF 574 (594)
Q Consensus 512 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 574 (594)
+.. ..+..+.+.++++++++.+|+++.+|.++|.++...|++++|+++|..
T Consensus 405 --~~~----------~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~k 455 (472)
T 4g1t_A 405 --SRE----------KEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSER 455 (472)
T ss_dssp --CHH----------HHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------
T ss_pred --cHH----------HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 111 112345667889999999999999999999999999999999977754
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=2.5e-21 Score=197.51 Aligned_cols=303 Identities=10% Similarity=0.035 Sum_probs=224.1
Q ss_pred HHHHHHHHhCCCCh----HHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHH
Q 007648 47 VIYERALKALPGSY----KLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKAR 122 (594)
Q Consensus 47 ~~~e~al~~~P~s~----~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~ 122 (594)
..+.+++...|.++ ..|...+... ...|++++|+..|++++..+|.++.+|..++.++...|+++.|+
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKR--------LKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAI 119 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHH--------HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHH--------HHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44455554444444 4487777665 34589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHHHHHHHHhcccHHHHHHHHHHhhcCccc
Q 007648 123 RTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQF 202 (594)
Q Consensus 123 ~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 202 (594)
..|+++++..|.+ ...|..++..+...|++ ++|+..|+++++..|++...+
T Consensus 120 ~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~-------------------------- 170 (365)
T 4eqf_A 120 VALQRCLELQPNN--LKALMALAVSYTNTSHQ-QDACEALKNWIKQNPKYKYLV-------------------------- 170 (365)
T ss_dssp HHHHHHHHHCTTC--HHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCHHHHCC---------------------------
T ss_pred HHHHHHHhcCCCC--HHHHHHHHHHHHccccH-HHHHHHHHHHHHhCccchHHH--------------------------
Confidence 9999999999986 78899999999899999 999999999998877643100
Q ss_pred ccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccc
Q 007648 203 YSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTV 282 (594)
Q Consensus 203 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 282 (594)
.... ....++..++..+...|++++|+..|++++...|..
T Consensus 171 ------------~~~~----------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 210 (365)
T 4eqf_A 171 ------------KNKK----------------------------GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM 210 (365)
T ss_dssp ----------------------------------------------------------CCHHHHHHHHHHHHHHHHSCSS
T ss_pred ------------hhhc----------------------------cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc
Confidence 0000 002355667778888899999999999888776652
Q ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHH
Q 007648 283 RDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARL 362 (594)
Q Consensus 283 ~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (594)
.
T Consensus 211 ~------------------------------------------------------------------------------- 211 (365)
T 4eqf_A 211 I------------------------------------------------------------------------------- 211 (365)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 2
Q ss_pred HhhhhhchhhhhhhhhccCCCChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHH
Q 007648 363 EHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIA 440 (594)
Q Consensus 363 ~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 440 (594)
++.+|..++.++ .|++++|+..|++++...|. .+.+|..+|.++...|+++
T Consensus 212 ---------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~ 264 (365)
T 4eqf_A 212 ---------------------DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE------DYSLWNRLGATLANGDRSE 264 (365)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHH
T ss_pred ---------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHH
Confidence 111222222222 27888899999999986443 5789999999999999999
Q ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHH
Q 007648 441 NARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTF 520 (594)
Q Consensus 441 ~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (594)
+|+..|+++++.+|+++ .+|..+|.++...|++++|+..|+++++..|+.. +. ........+..+|..
T Consensus 265 ~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~-~~~~~~~~~~~~~~~ 332 (365)
T 4eqf_A 265 EAVEAYTRALEIQPGFI----RSRYNLGISCINLGAYREAVSNFLTALSLQRKSR-------NQ-QQVPHPAISGNIWAA 332 (365)
T ss_dssp HHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC--------------------CHHHHH
T ss_pred HHHHHHHHHHhcCCCch----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccC-------CC-cccchhhhHHHHHHH
Confidence 99999999999999999 9999999999999999999999999999988511 00 000000124588999
Q ss_pred HHHHHHHhCChHHHHHHHHHHHhc
Q 007648 521 YVDLEESLGNLESTRAVYERILDL 544 (594)
Q Consensus 521 ~~~~~~~~g~~~~A~~~~~~al~~ 544 (594)
++.++...|+.+.+.++.++.+..
T Consensus 333 l~~~~~~~g~~~~a~~~~~~~l~~ 356 (365)
T 4eqf_A 333 LRIALSLMDQPELFQAANLGDLDV 356 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHTTCCGG
T ss_pred HHHHHHHcCcHHHHHHHHHhhHHH
Confidence 999999999999999988886654
No 29
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.87 E-value=1.1e-20 Score=192.91 Aligned_cols=257 Identities=10% Similarity=0.095 Sum_probs=206.8
Q ss_pred HHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHhhCCCC
Q 007648 94 ALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGI-PIETSLRVYRRYLKYDPSH 172 (594)
Q Consensus 94 al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~-~~~~a~~~~~~~l~~~p~~ 172 (594)
++..+|+++.+|..++.++...|++++|...|++++.++|.+ ..+|...+.++..+|+ + ++|+..|++++..+|++
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~--~~a~~~~g~~l~~~g~d~-~eAl~~~~~al~l~P~~ 165 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN--YTVWHFRRVLLKSLQKDL-HEEMNYITAIIEEQPKN 165 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHCTTC
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC--HHHHHHHHHHHHHcccCH-HHHHHHHHHHHHHCCCC
Confidence 455677888888888888888888888888888888888875 7788888888777785 7 88888888877777765
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHH
Q 007648 173 IEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLW 252 (594)
Q Consensus 173 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 252 (594)
. .+|
T Consensus 166 ~----------------------------------------------------------------------------~a~ 169 (382)
T 2h6f_A 166 Y----------------------------------------------------------------------------QVW 169 (382)
T ss_dssp H----------------------------------------------------------------------------HHH
T ss_pred H----------------------------------------------------------------------------HHH
Confidence 3 467
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhh
Q 007648 253 TSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDV 332 (594)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (594)
..+|.++...|++++|+..|+++|...|
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP---------------------------------------------------- 197 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDA---------------------------------------------------- 197 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCT----------------------------------------------------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCc----------------------------------------------------
Confidence 7777788888888777777776665544
Q ss_pred hhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHH
Q 007648 333 NLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAV 410 (594)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai 410 (594)
++..+|+.++.++. |++++|+..|++|+
T Consensus 198 --------------------------------------------------~~~~a~~~lg~~~~~~g~~~eAl~~~~~al 227 (382)
T 2h6f_A 198 --------------------------------------------------KNYHAWQHRQWVIQEFKLWDNELQYVDQLL 227 (382)
T ss_dssp --------------------------------------------------TCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred --------------------------------------------------cCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 44444555544442 78888999999999
Q ss_pred hccCCCcccCCchHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHhccCCChhhHHHHHHHHHHHHHhcC--ChHHHHH
Q 007648 411 RTVDPMKAVGKPHTLWVAFAKLYET-YKDIANA-----RVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK--NFKGALE 482 (594)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A-----~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~A~~ 482 (594)
.. +|. +..+|..+|.++.. .|..++| +..|++|++++|+++ .+|..++.++...| ++++|.+
T Consensus 228 ~l-~P~-----~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~----~a~~~l~~ll~~~g~~~~~~a~~ 297 (382)
T 2h6f_A 228 KE-DVR-----NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNE----SAWNYLKGILQDRGLSKYPNLLN 297 (382)
T ss_dssp HH-CTT-----CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHTTTCGGGCHHHHH
T ss_pred Hh-CCC-----CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHccCccchHHHHH
Confidence 86 453 67899999999988 5655777 599999999999999 99999999887777 6899999
Q ss_pred HHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhC--------C-hHHHHHHHHHH-HhccCCchHHH
Q 007648 483 LMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLG--------N-LESTRAVYERI-LDLRIATPQII 552 (594)
Q Consensus 483 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------~-~~~A~~~~~~a-l~~~P~~~~~~ 552 (594)
.++++ +..|+ ++.++..+++++.++| + +++|+++|+++ ++++|..+..|
T Consensus 298 ~~~~~-~~~p~--------------------~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w 356 (382)
T 2h6f_A 298 QLLDL-QPSHS--------------------SPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYW 356 (382)
T ss_dssp HHHHH-TTTCC--------------------CHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHh-ccCCC--------------------CHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHH
Confidence 99988 88884 6688889999998875 2 58999999999 99999999999
Q ss_pred HHHHHHHHHh
Q 007648 553 INYALLLEVW 562 (594)
Q Consensus 553 ~~~~~~~~~~ 562 (594)
..++..+...
T Consensus 357 ~~~~~~l~~~ 366 (382)
T 2h6f_A 357 RYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888754
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.87 E-value=9.3e-20 Score=182.05 Aligned_cols=276 Identities=11% Similarity=0.052 Sum_probs=220.5
Q ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHHHHHHH
Q 007648 101 MPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFL 180 (594)
Q Consensus 101 ~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~ 180 (594)
++..|+..+..+...|++++|...|+++++..|.+ ...|..++......|++ ++|...|+++++.+|.+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~-~~A~~~~~~a~~~~~~~~------- 89 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPER--EEAWRSLGLTQAENEKD-GLAIIALNHARMLDPKDI------- 89 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCH-------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCcCCH-------
Confidence 33567888888888889999999999999888875 67777777777777777 777777777776665542
Q ss_pred HhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 007648 181 VKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYI 260 (594)
Q Consensus 181 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~ 260 (594)
.+|..+|..+.
T Consensus 90 ---------------------------------------------------------------------~~~~~la~~~~ 100 (327)
T 3cv0_A 90 ---------------------------------------------------------------------AVHAALAVSHT 100 (327)
T ss_dssp ---------------------------------------------------------------------HHHHHHHHHHH
T ss_pred ---------------------------------------------------------------------HHHHHHHHHHH
Confidence 45777788888
Q ss_pred HhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHH
Q 007648 261 RRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFV 340 (594)
Q Consensus 261 ~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (594)
..|++++|.+.|++++...|..... +.... .
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~---~------------------------------------------- 131 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQL---GSVNL---Q------------------------------------------- 131 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC-------------------------------------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHH---HHHHh---H-------------------------------------------
Confidence 8999999999999999887765431 00000 0
Q ss_pred HhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHH-HH---HhcCCchhHHHHHHHHHhccCCC
Q 007648 341 KKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRR-VK---IFEGNPTKQILTYTEAVRTVDPM 416 (594)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~---~~~~~~~~a~~~y~~Ai~~~~~~ 416 (594)
..|.....+ .+ +. ...|++++|...|++++...|.
T Consensus 132 ---------------------------------------~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~- 170 (327)
T 3cv0_A 132 ---------------------------------------ADVDIDDLN-VQSEDFFFAAPNEYRECRTLLHAALEMNPN- 170 (327)
T ss_dssp ------------------------------------------------------CCTTSHHHHHHHHHHHHHHHHHSTT-
T ss_pred ---------------------------------------HHHHHHHHH-HHHHhHHHHHcccHHHHHHHHHHHHhhCCC-
Confidence 000000000 11 11 1126778899999999986443
Q ss_pred cccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHh
Q 007648 417 KAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVR 496 (594)
Q Consensus 417 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 496 (594)
...+|..+|.++...|++++|+..++++++..|+++ .+|..++.++...|++++|...|+++++..|+
T Consensus 171 -----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--- 238 (327)
T 3cv0_A 171 -----DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDA----QLWNKLGATLANGNRPQEALDAYNRALDINPG--- 238 (327)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred -----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---
Confidence 578999999999999999999999999999999999 89999999999999999999999999999995
Q ss_pred hhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCC------------chHHHHHHHHHHHHhch
Q 007648 497 RRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA------------TPQIIINYALLLEVWTL 564 (594)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~------------~~~~~~~~~~~~~~~g~ 564 (594)
++..|..++.++...|++++|.+.++++++..|+ ++.+|..++.++...|+
T Consensus 239 -----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 239 -----------------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred -----------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 5688999999999999999999999999999999 89999999999999999
Q ss_pred hhhhhhcccC
Q 007648 565 LHVFLLHVPF 574 (594)
Q Consensus 565 ~~~a~~~~~~ 574 (594)
+++|...+..
T Consensus 302 ~~~A~~~~~~ 311 (327)
T 3cv0_A 302 PDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHHH
Confidence 9999877664
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.86 E-value=2.1e-20 Score=186.83 Aligned_cols=284 Identities=12% Similarity=0.080 Sum_probs=215.0
Q ss_pred CchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHH
Q 007648 80 THPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSL 159 (594)
Q Consensus 80 ~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~ 159 (594)
..|++++|...|+++++.+|.++.+|..++.++...|+++.|...|+++++..|.+ ...|..++......|++ ++|.
T Consensus 33 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~~~~-~~A~ 109 (327)
T 3cv0_A 33 KLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD--IAVHAALAVSHTNEHNA-NAAL 109 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCH-HHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC--HHHHHHHHHHHHHcCCH-HHHH
Confidence 45899999999999999999999999999999999999999999999999999976 78888888888889999 9999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHH
Q 007648 160 RVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRG 239 (594)
Q Consensus 160 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (594)
+.|+++++..|.+...+.... ..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~---------------- 132 (327)
T 3cv0_A 110 ASLRAWLLSQPQYEQLGSVNL-----------------------------------------QA---------------- 132 (327)
T ss_dssp HHHHHHHHTSTTTTTC----------------------------------------------------------------
T ss_pred HHHHHHHHhCCccHHHHHHHh-----------------------------------------HH----------------
Confidence 999999998887642110000 00
Q ss_pred HHhhccchhHHHHHHH-HH-HHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccc
Q 007648 240 GIRKFTDEVGRLWTSL-AD-YYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDD 317 (594)
Q Consensus 240 ~~~~~p~~~~~~~~~l-a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~ 317 (594)
.|+. .....+ +. ++...|++++|...|++++...
T Consensus 133 ----~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------------------------------------- 168 (327)
T 3cv0_A 133 ----DVDI--DDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-------------------------------------- 168 (327)
T ss_dssp -------------------CCTTSHHHHHHHHHHHHHHHHHS--------------------------------------
T ss_pred ----HHHH--HHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC--------------------------------------
Confidence 0000 000111 11 2334455555655555555443
Q ss_pred cccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHh--
Q 007648 318 EEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF-- 395 (594)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~-- 395 (594)
|.++.+|..++.++
T Consensus 169 ----------------------------------------------------------------~~~~~~~~~la~~~~~ 184 (327)
T 3cv0_A 169 ----------------------------------------------------------------PNDAQLHASLGVLYNL 184 (327)
T ss_dssp ----------------------------------------------------------------TTCHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------------CCCHHHHHHHHHHHHH
Confidence 44444444444444
Q ss_pred cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcC
Q 007648 396 EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK 475 (594)
Q Consensus 396 ~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~ 475 (594)
.|++++|...|++++...|. ...+|..+|.++...|++++|+..|+++++..|+++ .+|..++.++...|
T Consensus 185 ~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 185 SNNYDSAAANLRRAVELRPD------DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYV----RVMYNMAVSYSNMS 254 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhc
Confidence 37889999999999986433 578999999999999999999999999999999999 89999999999999
Q ss_pred ChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCch
Q 007648 476 NFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP 549 (594)
Q Consensus 476 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~ 549 (594)
++++|.+.|+++++..|+.. .... ......++..|..++.++...|++++|..+++++++..|++.
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~-------~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 320 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGT-------TPTG-EASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEF 320 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSC-------C------CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHT
T ss_pred cHHHHHHHHHHHHHhCCccc-------cccc-cchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhh
Confidence 99999999999999988410 0000 000001467899999999999999999999999999877653
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.84 E-value=7.1e-20 Score=172.45 Aligned_cols=163 Identities=15% Similarity=0.101 Sum_probs=128.3
Q ss_pred CCCChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhc-----------CCHHHHHHHHH
Q 007648 381 NPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETY-----------KDIANARVIFD 447 (594)
Q Consensus 381 ~p~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~-----------~~~~~A~~~~~ 447 (594)
+|+++.+|+.++.++ .|++++|+..|++++.. .|+ .+.+|..+|.++... |++++|+..|+
T Consensus 35 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-~P~-----~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 108 (217)
T 2pl2_A 35 NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR-TPR-----YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLK 108 (217)
T ss_dssp SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT-----CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC-----cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHH
Confidence 333334444444433 26777788888888875 443 567888888888888 99999999999
Q ss_pred HHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHH
Q 007648 448 KAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEES 527 (594)
Q Consensus 448 kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (594)
++++.+|+++ .+|+.+|.++...|++++|+..|+++++.+ + ++.+|..++.++..
T Consensus 109 ~al~~~P~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~--------------------~~~~~~~la~~~~~ 163 (217)
T 2pl2_A 109 DAERVNPRYA----PLHLQRGLVYALLGERDKAEASLKQALALE-D--------------------TPEIRSALAELYLS 163 (217)
T ss_dssp HHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C--------------------CHHHHHHHHHHHHH
T ss_pred HHHHhCcccH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c--------------------chHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999999987 4 56889999999999
Q ss_pred hCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhhhcccC
Q 007648 528 LGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFLLHVPF 574 (594)
Q Consensus 528 ~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 574 (594)
.|++++|+..|+++++.+|+++.++.+++.++...|++++|+..+..
T Consensus 164 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 164 MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876643
No 33
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=2.4e-17 Score=175.21 Aligned_cols=374 Identities=11% Similarity=-0.018 Sum_probs=265.9
Q ss_pred CCCCHHHHHHHHHHH-H----cCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHh
Q 007648 23 NPFSLKLWWRYLVAK-R----EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVT 97 (594)
Q Consensus 23 ~P~~~~~w~~~~~~~-~----~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 97 (594)
.+.+.+.+..+.... . .+++++|...|+++++. .++..+........... ...+++++|...|++|...
T Consensus 35 ~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~----g~~~~~~~A~~~~~~a~~~ 108 (490)
T 2xm6_A 35 ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGE----GVPQDYAQAVIWYKKAALK 108 (490)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTS----SSCCCHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCC----CCCCCHHHHHHHHHHHHHC
Confidence 456777777777644 3 47788888888888875 45666666555442210 1246778888888888753
Q ss_pred cCCChHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH----cCCchHHHHHHHHHHHhhC
Q 007648 98 MHKMPRIWIMYLETLTS----QKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQ----EGIPIETSLRVYRRYLKYD 169 (594)
Q Consensus 98 ~P~~~~lw~~y~~~~~~----~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~----~~~~~~~a~~~~~~~l~~~ 169 (594)
.++..+..++.++.. .+++++|...|+++.... + ...+..++.++.. .++. ++|.+.|+++++..
T Consensus 109 --~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~--~~a~~~Lg~~y~~g~g~~~d~-~~A~~~~~~a~~~~ 181 (490)
T 2xm6_A 109 --GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--R--DSGQQSMGDAYFEGDGVTRDY-VMAREWYSKAAEQG 181 (490)
T ss_dssp --TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C--HHHHHHHHHHHHHTSSSCCCH-HHHHHHHHHHHHTT
T ss_pred --CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--C--HHHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHHCC
Confidence 567788888888877 677888888888887642 2 4556666666654 5566 78888888877653
Q ss_pred CCCHH---HHHHHHHh----cccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHh
Q 007648 170 PSHIE---DFIEFLVK----SKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIR 242 (594)
Q Consensus 170 p~~~~---~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (594)
+.. .+..++.. .+++++|...|+++..
T Consensus 182 --~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-------------------------------------------- 215 (490)
T 2xm6_A 182 --NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT-------------------------------------------- 215 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--------------------------------------------
T ss_pred --CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH--------------------------------------------
Confidence 333 23345555 5677777777766652
Q ss_pred hccchhHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCccccccc
Q 007648 243 KFTDEVGRLWTSLADYYIR----RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDE 318 (594)
Q Consensus 243 ~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~ 318 (594)
.. ....+..+|.++.. .+++++|...|++++...+.. ..+.....+... .+
T Consensus 216 ~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~----a~~~lg~~y~~g--------~~---------- 270 (490)
T 2xm6_A 216 SG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSI----AQFRLGYILEQG--------LA---------- 270 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHH----HHHHHHHHHHHT--------TT----------
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH----HHHHHHHHHHCC--------CC----------
Confidence 10 13567888888886 789999999999998763221 111111111110 00
Q ss_pred ccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--
Q 007648 319 EHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE-- 396 (594)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~-- 396 (594)
..++...++..|+++ . ...++.+++.++.++.
T Consensus 271 --------------------------------~~~d~~~A~~~~~~a------------~--~~~~~~a~~~Lg~~y~~~ 304 (490)
T 2xm6_A 271 --------------------------------GAKEPLKALEWYRKS------------A--EQGNSDGQYYLAHLYDKG 304 (490)
T ss_dssp --------------------------------SSCCHHHHHHHHHHH------------H--TTTCHHHHHHHHHHHHHC
T ss_pred --------------------------------CCCCHHHHHHHHHHH------------H--HcCCHHHHHHHHHHHHcC
Confidence 012344456667774 2 2367788888888763
Q ss_pred -----CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcC---CHHHHHHHHHHHHhccCCChhhHHHHHHHHH
Q 007648 397 -----GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYK---DIANARVIFDKAVQVNYKTVDHLASIWCEWA 468 (594)
Q Consensus 397 -----~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~ 468 (594)
+++++|...|++|++.- .+.++..+|.++...| ++++|+..|++|++. .++ ..++.++
T Consensus 305 ~~g~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~----~a~~~Lg 370 (490)
T 2xm6_A 305 AEGVAKNREQAISWYTKSAEQG--------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEK----AAQFNLG 370 (490)
T ss_dssp BTTBCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCH----HHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCH----HHHHHHH
Confidence 58999999999999842 4688999999998766 899999999999976 566 8899999
Q ss_pred HHHHh----cCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHH----hCChHHHHHHHHH
Q 007648 469 EMELR----HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEES----LGNLESTRAVYER 540 (594)
Q Consensus 469 ~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~ 540 (594)
.++.. .+++++|...|++|++..+ +..+..++.++.. .+++++|..+|++
T Consensus 371 ~~y~~g~g~~~~~~~A~~~~~~A~~~~~----------------------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 371 NALLQGKGVKKDEQQAAIWMRKAAEQGL----------------------SAAQVQLGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTC----------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHhCCC----------------------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 99888 7899999999999998754 4778889999988 8999999999999
Q ss_pred HHhcc---CCchHHHHHHHHHHHHh
Q 007648 541 ILDLR---IATPQIIINYALLLEVW 562 (594)
Q Consensus 541 al~~~---P~~~~~~~~~~~~~~~~ 562 (594)
|++.. |+++.++.+++.++...
T Consensus 429 A~~~~~~~~~~~~a~~~l~~~~~~~ 453 (490)
T 2xm6_A 429 ASTNDMNLFGTENRNITEKKLTAKQ 453 (490)
T ss_dssp HHHHHCCHHHHHHHHHHHTTSCHHH
T ss_pred HHHCCCCCcCCHHHHHHHHhcCHhH
Confidence 99999 55888999998876653
No 34
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.84 E-value=2.4e-19 Score=183.00 Aligned_cols=256 Identities=11% Similarity=0.118 Sum_probs=204.3
Q ss_pred HHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccc-HHHHHHHHHHHHH
Q 007648 52 ALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKF-ITKARRTFDRALC 130 (594)
Q Consensus 52 al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~-~~~A~~~~~ral~ 130 (594)
++...|.+.++|....... ...|++++|+..|++++.++|+++.+|...+.++..+|+ +++|...|++++.
T Consensus 89 ai~~~p~~~~a~~~lg~~~--------~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~ 160 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVL--------QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE 160 (382)
T ss_dssp EECCCHHHHHHHHHHHHHH--------HHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hhhCChhhHHHHHHHHHHH--------HHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 4566777788888777665 334889999999999999999999999999999999997 9999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHHHHHHHHhcccHHHHHHHHHHhhcCcccccccccch
Q 007648 131 ALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTK 210 (594)
Q Consensus 131 ~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 210 (594)
+.|.+ ..+|...+.++..+|++ ++|+..|+++++++|.+.
T Consensus 161 l~P~~--~~a~~~~g~~~~~~g~~-~eAl~~~~kal~ldP~~~------------------------------------- 200 (382)
T 2h6f_A 161 EQPKN--YQVWHHRRVLVEWLRDP-SQELEFIADILNQDAKNY------------------------------------- 200 (382)
T ss_dssp HCTTC--HHHHHHHHHHHHHHTCC-TTHHHHHHHHHHHCTTCH-------------------------------------
T ss_pred HCCCC--HHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCccCH-------------------------------------
Confidence 99986 89999999999999999 999999999999988864
Q ss_pred HHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHH
Q 007648 211 HRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFD 290 (594)
Q Consensus 211 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~ 290 (594)
.+|..+|.++...|++++|++.|+++|...|.+.. .|.
T Consensus 201 ---------------------------------------~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~---a~~ 238 (382)
T 2h6f_A 201 ---------------------------------------HAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS---VWN 238 (382)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH---HHH
T ss_pred ---------------------------------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH---HHH
Confidence 46788888888889999999888888887776642 221
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhch
Q 007648 291 SYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRP 370 (594)
Q Consensus 291 ~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (594)
T Consensus 239 -------------------------------------------------------------------------------- 238 (382)
T 2h6f_A 239 -------------------------------------------------------------------------------- 238 (382)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhccCCCChHHHHHHHHHhc---CCchh-----HHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcC--CHH
Q 007648 371 ELANSVLLRQNPHNVEQWHRRVKIFE---GNPTK-----QILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYK--DIA 440 (594)
Q Consensus 371 ~~~~~~~l~~~p~~~~~~~~~~~~~~---~~~~~-----a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~ 440 (594)
.++.++. +..++ ++..|++|+.. .|+ ...+|..++.++...| +++
T Consensus 239 -------------------~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l-~P~-----~~~a~~~l~~ll~~~g~~~~~ 293 (382)
T 2h6f_A 239 -------------------QRYFVISNTTGYNDRAVLEREVQYTLEMIKL-VPH-----NESAWNYLKGILQDRGLSKYP 293 (382)
T ss_dssp -------------------HHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH-STT-----CHHHHHHHHHHHTTTCGGGCH
T ss_pred -------------------HHHHHHHHhcCcchHHHHHHHHHHHHHHHHH-CCC-----CHHHHHHHHHHHHccCccchH
Confidence 1111110 11122 35778888875 443 5678888888888777 689
Q ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcC--------C-hHHHHHHHHHH-hcCCchhHhhhhhccCChhhhHH
Q 007648 441 NARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK--------N-FKGALELMRRA-TAEPSVEVRRRVAADGNEPVQMK 510 (594)
Q Consensus 441 ~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~--------~-~~~A~~~~~~a-l~~~p~~~~~~~~~~~~~~~~~~ 510 (594)
+|.+.++++ +.+|+++ .++..++.++.+.| + +++|+++|+++ ++.+|.
T Consensus 294 ~a~~~~~~~-~~~p~~~----~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~----------------- 351 (382)
T 2h6f_A 294 NLLNQLLDL-QPSHSSP----YLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTI----------------- 351 (382)
T ss_dssp HHHHHHHHH-TTTCCCH----HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGG-----------------
T ss_pred HHHHHHHHh-ccCCCCH----HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCch-----------------
Confidence 999999888 8899998 88888888887653 3 58999999999 999995
Q ss_pred hhccHhhHHHHHHHHHH
Q 007648 511 LHKSLRLWTFYVDLEES 527 (594)
Q Consensus 511 ~~~~~~~~~~~~~~~~~ 527 (594)
...+|..++..+..
T Consensus 352 ---r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 352 ---RKEYWRYIGRSLQS 365 (382)
T ss_dssp ---GHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHH
Confidence 44777777665543
No 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.81 E-value=2.3e-18 Score=167.52 Aligned_cols=263 Identities=10% Similarity=0.034 Sum_probs=188.0
Q ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHHHHHHH
Q 007648 101 MPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFL 180 (594)
Q Consensus 101 ~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~ 180 (594)
++..++.+|.++...|+++.|...|+++++..|.+ ...|..++......|++ ++|+..|+++++ .|.+..
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~~~~-~~A~~~~~~a~~-~~~~~~------ 71 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNS--PYIYNRRAVCYYELAKY-DLAQKDIETYFS-KVNATK------ 71 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCC--STTHHHHHHHHHHTTCH-HHHHHHHHHHHT-TSCTTT------
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHHhhH-HHHHHHHHHHHh-ccCchh------
Confidence 34566777777777888888888888888777764 34566666666666666 666666666665 332210
Q ss_pred HhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 007648 181 VKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYI 260 (594)
Q Consensus 181 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~ 260 (594)
.....|..+|.++.
T Consensus 72 ------------------------------------------------------------------~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 72 ------------------------------------------------------------------AKSADFEYYGKILM 85 (272)
T ss_dssp ------------------------------------------------------------------CCHHHHHHHHHHHH
T ss_pred ------------------------------------------------------------------HHHHHHHHHHHHHH
Confidence 01356888999999
Q ss_pred HhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHH
Q 007648 261 RRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFV 340 (594)
Q Consensus 261 ~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (594)
..|++++|...|++++...|...
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~~~--------------------------------------------------------- 108 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTTRL--------------------------------------------------------- 108 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCT---------------------------------------------------------
T ss_pred HcccHHHHHHHHHHHHhcCcccH---------------------------------------------------------
Confidence 99999999999999887766543
Q ss_pred HhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcc
Q 007648 341 KKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKA 418 (594)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~ 418 (594)
.+|..+|.++ .|++++|+..|++++.. .|.
T Consensus 109 ---------------------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~-- 140 (272)
T 3u4t_A 109 ---------------------------------------------DMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTT-- 140 (272)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCC--
T ss_pred ---------------------------------------------HHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCC--
Confidence 1222222222 26778888888888875 442
Q ss_pred cCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCC---hHHHHHHHHHHhcCCchhH
Q 007648 419 VGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN---FKGALELMRRATAEPSVEV 495 (594)
Q Consensus 419 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~ 495 (594)
.+.+|..+|......+++++|+..|+++++..|+++ ..++.++.++...|+ +++|+..|+++++......
T Consensus 141 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 213 (272)
T 3u4t_A 141 ---DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIY----IGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGG 213 (272)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGG
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccch----HHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhccc
Confidence 578889999444445699999999999999999998 888889998888888 8899999999998863100
Q ss_pred hhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhc
Q 007648 496 RRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWT 563 (594)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g 563 (594)
......-...+..++.++...|++++|+..|+++++++|+++.++-.++.+....|
T Consensus 214 ------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 214 ------------AKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp ------------GGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred ------------ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 00000013678889999999999999999999999999999999998888776544
No 36
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=6.2e-16 Score=164.29 Aligned_cols=360 Identities=10% Similarity=-0.020 Sum_probs=265.9
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh----cccHHHH
Q 007648 46 FVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTS----QKFITKA 121 (594)
Q Consensus 46 ~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~----~~~~~~A 121 (594)
...++++.+ +.+++.+..+........ ...+++++|...|++|++. .++..+..++.++.. .+++++|
T Consensus 27 ~~~~~~~a~--~g~~~a~~~lg~~y~~g~----~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 27 LEQLKQKAE--SGEAKAQLELGYRYFQGN----ETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHHTS----SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHH--CCCHHHHHHHHHHHHcCC----CCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 445555544 556666666655442211 2357899999999999875 678899999999988 8899999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHH----cCCchHHHHHHHHHHHhhCCCCHH---HHHHHHHh----cccHHHHH
Q 007648 122 RRTFDRALCALPVTQHDRIWEIYLRFVEQ----EGIPIETSLRVYRRYLKYDPSHIE---DFIEFLVK----SKLWQEAA 190 (594)
Q Consensus 122 ~~~~~ral~~~p~~~~~~~w~~~~~~~~~----~~~~~~~a~~~~~~~l~~~p~~~~---~~~~~~~~----~~~~~~a~ 190 (594)
...|+++.... + ...+..++.++.. .+++ ++|++.|+++.+.. +.. .+..++.. .+++++|.
T Consensus 99 ~~~~~~a~~~~--~--~~a~~~Lg~~y~~g~g~~~~~-~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 99 VIWYKKAALKG--L--PQAQQNLGVMYHEGNGVKVDK-AESVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp HHHHHHHHHTT--C--HHHHHHHHHHHHHTSSSCCCH-HHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHCC--C--HHHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 99999998753 2 5667777777766 6677 89999999988763 443 34455655 67888888
Q ss_pred HHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHH----hccHH
Q 007648 191 ERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIR----RELFE 266 (594)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~----~g~~~ 266 (594)
..|+++++. + ....+..+|.+|.. .++++
T Consensus 172 ~~~~~a~~~----------------------------------------------~-~~~a~~~Lg~~y~~g~g~~~~~~ 204 (490)
T 2xm6_A 172 EWYSKAAEQ----------------------------------------------G-NVWSCNQLGYMYSRGLGVERNDA 204 (490)
T ss_dssp HHHHHHHHT----------------------------------------------T-CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHC----------------------------------------------C-CHHHHHHHHHHHhcCCCCCcCHH
Confidence 888776520 0 14678889999988 78999
Q ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhcc
Q 007648 267 KARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNG 346 (594)
Q Consensus 267 ~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (594)
+|...|++++...+.. ..+.....+.. +.
T Consensus 205 ~A~~~~~~a~~~~~~~----a~~~lg~~y~~----------g~------------------------------------- 233 (490)
T 2xm6_A 205 ISAQWYRKSATSGDEL----GQLHLADMYYF----------GI------------------------------------- 233 (490)
T ss_dssp HHHHHHHHHHHTTCHH----HHHHHHHHHHH----------TS-------------------------------------
T ss_pred HHHHHHHHHHHCCCHH----HHHHHHHHHHc----------CC-------------------------------------
Confidence 9999999998753211 11111111110 00
Q ss_pred ccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc------CCchhHHHHHHHHHhccCCCcccC
Q 007648 347 FWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE------GNPTKQILTYTEAVRTVDPMKAVG 420 (594)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~------~~~~~a~~~y~~Ai~~~~~~~~~~ 420 (594)
+..++...+...|+++ +. ..++.+++.++.++. +++++|...|++|+..-
T Consensus 234 ---g~~~~~~~A~~~~~~a------------~~--~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~------- 289 (490)
T 2xm6_A 234 ---GVTQDYTQSRVLFSQS------------AE--QGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG------- 289 (490)
T ss_dssp ---SSCCCHHHHHHHHHHH------------HT--TTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT-------
T ss_pred ---CCCCCHHHHHHHHHHH------------HH--CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC-------
Confidence 0012344456667764 22 356778888877763 68999999999998741
Q ss_pred CchHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcC---ChHHHHHHHHHHhcCCc
Q 007648 421 KPHTLWVAFAKLYETY-----KDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK---NFKGALELMRRATAEPS 492 (594)
Q Consensus 421 ~~~~~~~~~a~~~~~~-----~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p 492 (594)
.+.++..+|.++... +++++|+..|+++++. .++ ..++.++.++...| ++++|..+|+++++..
T Consensus 290 -~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~----~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~- 361 (490)
T 2xm6_A 290 -NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDA----TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG- 361 (490)
T ss_dssp -CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCH----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT-
T ss_pred -CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCH----HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC-
Confidence 468899999999887 8999999999999975 455 67888898887655 7899999999999873
Q ss_pred hhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHH----hCChHHHHHHHHHHHhccCCchHHHHHHHHHHHH----hch
Q 007648 493 VEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEES----LGNLESTRAVYERILDLRIATPQIIINYALLLEV----WTL 564 (594)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~----~g~ 564 (594)
++..+..++.++.. .+++++|..+|++|++. .++.++.+++.++.. .++
T Consensus 362 ---------------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d 418 (490)
T 2xm6_A 362 ---------------------EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERD 418 (490)
T ss_dssp ---------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred ---------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCC
Confidence 35788899999988 89999999999999985 579999999999998 889
Q ss_pred hhhhhhccc
Q 007648 565 LHVFLLHVP 573 (594)
Q Consensus 565 ~~~a~~~~~ 573 (594)
+++|+..+.
T Consensus 419 ~~~A~~~~~ 427 (490)
T 2xm6_A 419 YVQAWAWFD 427 (490)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999875543
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.6e-17 Score=159.64 Aligned_cols=247 Identities=11% Similarity=0.062 Sum_probs=192.3
Q ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHHHHHHH
Q 007648 101 MPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFL 180 (594)
Q Consensus 101 ~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~ 180 (594)
.+..|...|..+...|++++|...|+++++.. .+ ...|..++......|++ ++|+..|+++++..|.+..
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~--~~~~~~~~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~------ 73 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD--ITYLNNRAAAEYEKGEY-ETAISTLNDAVEQGREMRA------ 73 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC--THHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc--HHHHHHHHHHHHHcccH-HHHHHHHHHHHHhCccccc------
Confidence 35678888888888888888888888888877 33 56777777777777777 7777777777665544310
Q ss_pred HhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 007648 181 VKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYI 260 (594)
Q Consensus 181 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~ 260 (594)
+ ++ ....+|..+|..+.
T Consensus 74 ---------------------------------------------~-----------------~~-~~~~~~~~l~~~~~ 90 (258)
T 3uq3_A 74 ---------------------------------------------D-----------------YK-VISKSFARIGNAYH 90 (258)
T ss_dssp ---------------------------------------------C-----------------HH-HHHHHHHHHHHHHH
T ss_pred ---------------------------------------------c-----------------hH-HHHHHHHHHHHHHH
Confidence 0 00 01467899999999
Q ss_pred HhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHH
Q 007648 261 RRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFV 340 (594)
Q Consensus 261 ~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (594)
..|++++|...|++++...|... ++..
T Consensus 91 ~~~~~~~A~~~~~~a~~~~~~~~----~~~~------------------------------------------------- 117 (258)
T 3uq3_A 91 KLGDLKKTIEYYQKSLTEHRTAD----ILTK------------------------------------------------- 117 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCHH----HHHH-------------------------------------------------
T ss_pred HcccHHHHHHHHHHHHhcCchhH----HHHH-------------------------------------------------
Confidence 99999999999999998765521 1000
Q ss_pred HhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhcCCchhHHHHHHHHHhccCCCcccC
Q 007648 341 KKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVG 420 (594)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~y~~Ai~~~~~~~~~~ 420 (594)
. |++++|...+++++.. .|.
T Consensus 118 ------------------~-------------------------------------~~~~~a~~~~~~~~~~-~~~---- 137 (258)
T 3uq3_A 118 ------------------L-------------------------------------RNAEKELKKAEAEAYV-NPE---- 137 (258)
T ss_dssp ------------------H-------------------------------------HHHHHHHHHHHHHHHC-CHH----
T ss_pred ------------------H-------------------------------------hHHHHHHHHHHHHHHc-Ccc----
Confidence 0 1123455666666664 332
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhh
Q 007648 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (594)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 500 (594)
...+|..+|.++...|++++|+..|+++++..|.++ .+|..+|.++...|++++|...++++++..|+
T Consensus 138 -~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------- 205 (258)
T 3uq3_A 138 -KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA----RGYSNRAAALAKLMSFPEAIADCNKAIEKDPN------- 205 (258)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------
T ss_pred -hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-------
Confidence 567888999999999999999999999999999998 88999999999999999999999999999884
Q ss_pred ccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhcc------CCchHHHHHHHHH
Q 007648 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR------IATPQIIINYALL 558 (594)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------P~~~~~~~~~~~~ 558 (594)
++..|..++.++...|++++|...|+++++++ |+++.++..++.+
T Consensus 206 -------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 206 -------------FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp -------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred -------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 56888999999999999999999999999999 8888888777654
No 38
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=1.8e-17 Score=163.35 Aligned_cols=107 Identities=7% Similarity=0.007 Sum_probs=69.0
Q ss_pred chhHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHH
Q 007648 81 HPEYETLNNTFERALVTMHKM-PRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSL 159 (594)
Q Consensus 81 ~~~~~~A~~~~~~al~~~P~~-~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~ 159 (594)
.|+|+.|+..+++.....|++ .+....++..++.+|+++.|...++.. .|. .......++.+....++. ++|+
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~--~~~a~~~la~~~~~~~~~-~~A~ 85 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAP--ELQAVRMFAEYLASHSRR-DAIV 85 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCH--HHHHHHHHHHHHHCSTTH-HHHH
T ss_pred HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CCh--hHHHHHHHHHHHcCCCcH-HHHH
Confidence 478888888888877777766 356677788888888888888766541 221 133444455566566666 7777
Q ss_pred HHHHHHHhh--CCCCHHH---HHHHHHhcccHHHHHHHH
Q 007648 160 RVYRRYLKY--DPSHIED---FIEFLVKSKLWQEAAERL 193 (594)
Q Consensus 160 ~~~~~~l~~--~p~~~~~---~~~~~~~~~~~~~a~~~~ 193 (594)
+.+++++.. +|++... .+..+...|++++|...|
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l 124 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTL 124 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 777777654 4666542 234455566666666554
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.78 E-value=1.4e-17 Score=156.69 Aligned_cols=196 Identities=12% Similarity=0.033 Sum_probs=158.2
Q ss_pred CCCHHHHHHHHHHH-HcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCh
Q 007648 24 PFSLKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMP 102 (594)
Q Consensus 24 P~~~~~w~~~~~~~-~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~ 102 (594)
|.+...|..++... ..|++++|...|+++++.+|.++..|...+... ...|++++|+..|+++++.+|+++
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~--------~~~g~~~~A~~~~~~al~~~P~~~ 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQ--------LKLGLVNPALENGKTLVARTPRYL 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHH--------HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHHhCCCcH
Confidence 77888999888855 589999999999999999999999999888776 345899999999999999999999
Q ss_pred HHHHHHHHHHHhc-----------ccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCC
Q 007648 103 RIWIMYLETLTSQ-----------KFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPS 171 (594)
Q Consensus 103 ~lw~~y~~~~~~~-----------~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~ 171 (594)
..|..++.++..+ |++++|...|+++++..|.+ ...|..++.++...|++ ++|+..|+++++.+ +
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~--~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~-~ 149 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY--APLHLQRGLVYALLGER-DKAEASLKQALALE-D 149 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHC-C
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHcCCh-HHHHHHHHHHHhcc-c
Confidence 9999999999999 99999999999999999986 78999999999999999 99999999999999 7
Q ss_pred CHHH---HHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchh
Q 007648 172 HIED---FIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEV 248 (594)
Q Consensus 172 ~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 248 (594)
+... ++.++...|++++|+..|++++. ..|++
T Consensus 150 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------------------------------------~~P~~- 184 (217)
T 2pl2_A 150 TPEIRSALAELYLSMGRLDEALAQYAKALE--------------------------------------------QAPKD- 184 (217)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------------------------------------HSTTC-
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------------------------hCCCC-
Confidence 7763 45678889999999998887762 12222
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 007648 249 GRLWTSLADYYIRRELFEKARDIFEEGM 276 (594)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (594)
..++..+|.++...|++++|+..|+++-
T Consensus 185 ~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 185 LDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHTC---------------
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 5688999999999999999999998864
No 40
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.78 E-value=5.7e-18 Score=174.50 Aligned_cols=168 Identities=11% Similarity=0.039 Sum_probs=128.3
Q ss_pred HHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC--hhhHHH
Q 007648 387 QWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKT--VDHLAS 462 (594)
Q Consensus 387 ~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~--~~~~~~ 462 (594)
++..++.++ .|++++|...|++++...+..........++..+|.++...|++++|+..+++++...|.. +.....
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 344444444 3888999999999997532211111134588999999999999999999999999976654 223346
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHH
Q 007648 463 IWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERIL 542 (594)
Q Consensus 463 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 542 (594)
++..+|.++...|++++|...|+++++..+... . .......+..++.++...|++++|...+++++
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--------~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN--------D------RIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------C------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC--------C------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888999999999999999999999998866310 0 00124678899999999999999999999999
Q ss_pred hccC------CchHHHHHHHHHHHHhchhhhh
Q 007648 543 DLRI------ATPQIIINYALLLEVWTLLHVF 568 (594)
Q Consensus 543 ~~~P------~~~~~~~~~~~~~~~~g~~~~a 568 (594)
++.+ ....++..++.++...|+....
T Consensus 335 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 335 EISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 9743 3467888999999999977554
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.78 E-value=2.2e-17 Score=160.41 Aligned_cols=240 Identities=11% Similarity=0.074 Sum_probs=185.3
Q ss_pred hHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC--H
Q 007648 60 YKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQ--H 137 (594)
Q Consensus 60 ~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~--~ 137 (594)
++.+..++... ...|++++|+..|+++++.+|.++.+|..++.++...|++++|...|+++++ .|.+. .
T Consensus 3 ~~~~~~~a~~~--------~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~ 73 (272)
T 3u4t_A 3 DDVEFRYADFL--------FKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAK 73 (272)
T ss_dssp --CHHHHHHHH--------HTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCC
T ss_pred HHHHHHHHHHH--------HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHH
Confidence 34555666555 4569999999999999999999999999999999999999999999999999 55321 1
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHHHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHH
Q 007648 138 DRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLEL 217 (594)
Q Consensus 138 ~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 217 (594)
...|..++......|++ ++|++.|+++++.+|.+.
T Consensus 74 ~~~~~~lg~~~~~~~~~-~~A~~~~~~a~~~~~~~~-------------------------------------------- 108 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQD-SLAIQQYQAAVDRDTTRL-------------------------------------------- 108 (272)
T ss_dssp HHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCT--------------------------------------------
T ss_pred HHHHHHHHHHHHHcccH-HHHHHHHHHHHhcCcccH--------------------------------------------
Confidence 34577777777778888 888888887777666542
Q ss_pred HHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHH
Q 007648 218 CDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297 (594)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~ 297 (594)
.+|..+|.++...|++++|...|++++...|...
T Consensus 109 --------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-------------- 142 (272)
T 3u4t_A 109 --------------------------------DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDP-------------- 142 (272)
T ss_dssp --------------------------------HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCH--------------
T ss_pred --------------------------------HHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcH--------------
Confidence 4678888888899999999888888776654433
Q ss_pred HHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhh
Q 007648 298 IMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVL 377 (594)
Q Consensus 298 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (594)
T Consensus 143 -------------------------------------------------------------------------------- 142 (272)
T 3u4t_A 143 -------------------------------------------------------------------------------- 142 (272)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCCCChHHHHHHH-HHh-cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCC---HHHHHHHHHHHHhc
Q 007648 378 LRQNPHNVEQWHRRV-KIF-EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKD---IANARVIFDKAVQV 452 (594)
Q Consensus 378 l~~~p~~~~~~~~~~-~~~-~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~kal~~ 452 (594)
.+|..++ ..+ .+++++|...|++++...|. ...+|+.+|.++...|+ ++.|+..|+++++.
T Consensus 143 --------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 143 --------KVFYELGQAYYYNKEYVKADSSFVKVLELKPN------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp --------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 2222333 222 24677888899999886433 46888888988888887 88899999999987
Q ss_pred c---CCC-hhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCch
Q 007648 453 N---YKT-VDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSV 493 (594)
Q Consensus 453 ~---p~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 493 (594)
. |+. ...+..+|..+|.++...|++++|+..|+++++.+|+
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT 253 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 5 332 1223468888999999999999999999999999996
No 42
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.76 E-value=4.6e-17 Score=148.52 Aligned_cols=124 Identities=10% Similarity=0.061 Sum_probs=103.3
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCC
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~ 476 (594)
|++++|...+++++...+. ...++..+|.++...++++.|...+++++...|+++ .+|..+|.++.+.|+
T Consensus 53 ~~~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~----~~~~~lg~~~~~~g~ 122 (184)
T 3vtx_A 53 GLPNDAIESLKKFVVLDTT------SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYA----DAYYKLGLVYDSMGE 122 (184)
T ss_dssp TCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHhcCch------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch----HHHHHHHHHHHHhCC
Confidence 6677788888888875332 567888888888888888888888888888888888 888888888888888
Q ss_pred hHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchH
Q 007648 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550 (594)
Q Consensus 477 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~ 550 (594)
+++|++.|+++++.+|+ ++.+|..+|.++.+.|++++|++.|++|++++|+++.
T Consensus 123 ~~~A~~~~~~~l~~~p~--------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 123 HDKAIEAYEKTISIKPG--------------------FIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHHHHHCTT--------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred chhHHHHHHHHHHhcch--------------------hhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 88899989988888884 5678888888888888999999999999888887754
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.76 E-value=2.3e-17 Score=157.19 Aligned_cols=218 Identities=11% Similarity=0.032 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhh
Q 007648 249 GRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDI 328 (594)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 328 (594)
...|+.+|..+...|++++|...|++++...|.... .+.........
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~---~~~~la~~~~~------------------------------ 69 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAI---PYINFANLLSS------------------------------ 69 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHH---HHHHHHHHHHH------------------------------
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHH---HHHHHHHHHHH------------------------------
Confidence 467899999999999999999999999998887642 22222111110
Q ss_pred HhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CCchhHHHHH
Q 007648 329 RLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTY 406 (594)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y 406 (594)
.+....++..+++ ++..+|.+..+|..++.++. |++++|+..|
T Consensus 70 -----------------------~~~~~~A~~~~~~------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 114 (243)
T 2q7f_A 70 -----------------------VNELERALAFYDK------------ALELDSSAATAYYGAGNVYVVKEMYKEAKDMF 114 (243)
T ss_dssp -----------------------TTCHHHHHHHHHH------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------------------cCCHHHHHHHHHH------------HHHcCCcchHHHHHHHHHHHHhccHHHHHHHH
Confidence 1224445666777 46778999999999988874 8999999999
Q ss_pred HHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007648 407 TEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRR 486 (594)
Q Consensus 407 ~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 486 (594)
++++...|. ...+|..+|.++...|++++|+..++++++..|+++ .+|..++.++...|++++|+..+++
T Consensus 115 ~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (243)
T 2q7f_A 115 EKALRAGME------NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDT----EARFQFGMCLANEGMLDEALSQFAA 184 (243)
T ss_dssp HHHHHHTCC------SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHhCCC------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999986443 578999999999999999999999999999999999 8999999999999999999999999
Q ss_pred HhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhch
Q 007648 487 ATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTL 564 (594)
Q Consensus 487 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~ 564 (594)
+++..|+ ++..|..++.++...|++++|...++++++.+|+++.++..++.+....|.
T Consensus 185 ~~~~~~~--------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~ 242 (243)
T 2q7f_A 185 VTEQDPG--------------------HADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242 (243)
T ss_dssp HHHHCTT--------------------CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-------
T ss_pred HHHhCcc--------------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhccC
Confidence 9999994 568899999999999999999999999999999999999998887765553
No 44
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.76 E-value=3.9e-17 Score=148.99 Aligned_cols=161 Identities=14% Similarity=0.116 Sum_probs=148.8
Q ss_pred CChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhH
Q 007648 383 HNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHL 460 (594)
Q Consensus 383 ~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~ 460 (594)
+++.+|+.+|..+. |++++|+..|++|++. +|+ .+.+|..+|.++...|++++|+..+++++...|+++
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~-~p~-----~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~--- 73 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA-DPN-----NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA--- 73 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH---
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH---
Confidence 45778999998874 9999999999999996 553 689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHH
Q 007648 461 ASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540 (594)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 540 (594)
.++..++.+....++++.|...++++++..|+ ++..|..++.++.+.|++++|++.|++
T Consensus 74 -~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~--------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (184)
T 3vtx_A 74 -EAYYILGSANFMIDEKQAAIDALQRAIALNTV--------------------YADAYYKLGLVYDSMGEHDKAIEAYEK 132 (184)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--------------------chHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 89999999999999999999999999999995 678899999999999999999999999
Q ss_pred HHhccCCchHHHHHHHHHHHHhchhhhhhhccc
Q 007648 541 ILDLRIATPQIIINYALLLEVWTLLHVFLLHVP 573 (594)
Q Consensus 541 al~~~P~~~~~~~~~~~~~~~~g~~~~a~~~~~ 573 (594)
+++.+|+++.+|.++|.++.+.|++++|++++.
T Consensus 133 ~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 165 (184)
T 3vtx_A 133 TISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFK 165 (184)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999999986553
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.75 E-value=2.1e-16 Score=153.62 Aligned_cols=126 Identities=13% Similarity=0.050 Sum_probs=106.1
Q ss_pred CCchhHHHHHHHHHHHHHh----cCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCc
Q 007648 79 ITHPEYETLNNTFERALVT----MHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIP 154 (594)
Q Consensus 79 ~~~~~~~~A~~~~~~al~~----~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~ 154 (594)
...+++++|+..|+++++. .|.++.+|..++.++...|+++.|...|+++++..|.+ ...|..++.+....|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM--PEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHccCH
Confidence 4579999999999999997 45678899999999999999999999999999999976 78888888888888888
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHH
Q 007648 155 IETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVD 234 (594)
Q Consensus 155 ~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 234 (594)
++|++.|+++++.+|.+.
T Consensus 94 -~~A~~~~~~al~~~~~~~------------------------------------------------------------- 111 (275)
T 1xnf_A 94 -DAAYEAFDSVLELDPTYN------------------------------------------------------------- 111 (275)
T ss_dssp -HHHHHHHHHHHHHCTTCT-------------------------------------------------------------
T ss_pred -HHHHHHHHHHHhcCcccc-------------------------------------------------------------
Confidence 888888888887766642
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccc
Q 007648 235 AIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVR 283 (594)
Q Consensus 235 ~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 283 (594)
.+|..+|.++...|++++|...|++++...|+..
T Consensus 112 ---------------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 112 ---------------YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp ---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ---------------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 3577778888888888888888888887766543
No 46
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=2.6e-16 Score=154.98 Aligned_cols=153 Identities=14% Similarity=0.152 Sum_probs=73.3
Q ss_pred CCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChh
Q 007648 381 NPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVD 458 (594)
Q Consensus 381 ~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~ 458 (594)
+|+++.+++.+|.++. |++++|+..|++ +. ...++..+|.++.+.|++++|+..|+++++.+|++..
T Consensus 97 ~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 165 (291)
T 3mkr_A 97 DVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GD------SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATL 165 (291)
T ss_dssp CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CC------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHH
Confidence 3555555555444442 455555555544 11 3445555555555555555555555555555554430
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHH
Q 007648 459 HLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVY 538 (594)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 538 (594)
..+...|..+....|++++|..+|+++++..|+ ++.+|...+.++.+.|++++|...|
T Consensus 166 --~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~--------------------~~~~~~~la~~~~~~g~~~eA~~~l 223 (291)
T 3mkr_A 166 --TQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP--------------------TLLLLNGQAACHMAQGRWEAAEGVL 223 (291)
T ss_dssp --HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC--------------------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --HHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC--------------------cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 011111222223334555555555555555552 3445555555555555555555555
Q ss_pred HHHHhccCCchHHHHHHHHHHHHhchhh
Q 007648 539 ERILDLRIATPQIIINYALLLEVWTLLH 566 (594)
Q Consensus 539 ~~al~~~P~~~~~~~~~~~~~~~~g~~~ 566 (594)
+++++++|+++++|.+++.++...|+..
T Consensus 224 ~~al~~~p~~~~~l~~l~~~~~~~g~~~ 251 (291)
T 3mkr_A 224 QEALDKDSGHPETLINLVVLSQHLGKPP 251 (291)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCH
Confidence 5555555555555555555555555443
No 47
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.74 E-value=2e-17 Score=181.78 Aligned_cols=165 Identities=15% Similarity=0.192 Sum_probs=152.7
Q ss_pred ccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC
Q 007648 379 RQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKT 456 (594)
Q Consensus 379 ~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~ 456 (594)
...|++++++..+|.++. |++++|+..|++|++. .|+ +..+|.++|.++.+.|++++|+..|++|++++|++
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l-~P~-----~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~ 76 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPE-----FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 76 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 357999999999999885 8999999999999996 453 68999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHH
Q 007648 457 VDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRA 536 (594)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 536 (594)
+ .+|+.+|.++...|++++|++.|++|++++|+ ++..|..++.++...|++++|++
T Consensus 77 ~----~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~--------------------~~~a~~~Lg~~~~~~g~~~eAi~ 132 (723)
T 4gyw_A 77 A----DAYSNMGNTLKEMQDVQGALQCYTRAIQINPA--------------------FADAHSNLASIHKDSGNIPEAIA 132 (723)
T ss_dssp H----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred H----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------CHHHHHHHHHHHHHcCCHHHHHH
Confidence 9 99999999999999999999999999999995 67899999999999999999999
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHHhchhhhhhhccc
Q 007648 537 VYERILDLRIATPQIIINYALLLEVWTLLHVFLLHVP 573 (594)
Q Consensus 537 ~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~~~~~ 573 (594)
.|++|++++|+++.++.+++.++...|++++|++++.
T Consensus 133 ~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~ 169 (723)
T 4gyw_A 133 SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 169 (723)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred HHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHH
Confidence 9999999999999999999999999999999875543
No 48
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.3e-16 Score=153.36 Aligned_cols=218 Identities=9% Similarity=0.047 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhh
Q 007648 249 GRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDI 328 (594)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 328 (594)
...|..+|..+...|++++|...|+++++.. .+. ..+...+.....
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~---~~~~~~~~~~~~------------------------------ 50 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDI---TYLNNRAAAEYE------------------------------ 50 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCT---HHHHHHHHHHHH------------------------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccH---HHHHHHHHHHHH------------------------------
Confidence 5689999999999999999999999999987 433 222222211110
Q ss_pred HhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCC-------hHHHHHHHHHhc--CCc
Q 007648 329 RLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHN-------VEQWHRRVKIFE--GNP 399 (594)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~-------~~~~~~~~~~~~--~~~ 399 (594)
.++...++..++++ +..+|.+ +.+|..++.++. |++
T Consensus 51 -----------------------~~~~~~A~~~~~~a------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 95 (258)
T 3uq3_A 51 -----------------------KGEYETAISTLNDA------------VEQGREMRADYKVISKSFARIGNAYHKLGDL 95 (258)
T ss_dssp -----------------------TTCHHHHHHHHHHH------------HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred -----------------------cccHHHHHHHHHHH------------HHhCcccccchHHHHHHHHHHHHHHHHcccH
Confidence 11233455556663 4444444 678888888874 899
Q ss_pred hhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHH
Q 007648 400 TKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKG 479 (594)
Q Consensus 400 ~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (594)
++|+..|++++.. .| . +.++...|++++|+..+++++..+|.++ .+|..+|.++...|++++
T Consensus 96 ~~A~~~~~~a~~~-~~------~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 96 KKTIEYYQKSLTE-HR------T-------ADILTKLRNAEKELKKAEAEAYVNPEKA----EEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHHHHHH-CC------C-------HHHHHHHHHHHHHHHHHHHHHHCCHHHH----HHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhc-Cc------h-------hHHHHHHhHHHHHHHHHHHHHHcCcchH----HHHHHHHHHHHHhcCHHH
Confidence 9999999999986 34 1 2345567889999999999999999998 899999999999999999
Q ss_pred HHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 007648 480 ALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLL 559 (594)
Q Consensus 480 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~ 559 (594)
|...|+++++..|+ ++.+|..++.++...|++++|...++++++.+|+++.+|..+|.++
T Consensus 158 A~~~~~~a~~~~~~--------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 217 (258)
T 3uq3_A 158 AVKAYTEMIKRAPE--------------------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 217 (258)
T ss_dssp HHHHHHHHHHHCTT--------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc--------------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 99999999999995 5688999999999999999999999999999999999999999999
Q ss_pred HHhchhhhhhhccc
Q 007648 560 EVWTLLHVFLLHVP 573 (594)
Q Consensus 560 ~~~g~~~~a~~~~~ 573 (594)
...|++++|+.++.
T Consensus 218 ~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 218 IAVKEYASALETLD 231 (258)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhhHHHHHHHHH
Confidence 99999999985543
No 49
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.74 E-value=7.6e-17 Score=170.31 Aligned_cols=172 Identities=16% Similarity=0.115 Sum_probs=151.9
Q ss_pred hhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhc---------CCHHHHHHH
Q 007648 377 LLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETY---------KDIANARVI 445 (594)
Q Consensus 377 ~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~ 445 (594)
++..+|+++.+|..+|.++. |++++|+..|++|+.. .| ...+|..+|.++... |++++|+..
T Consensus 129 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-~p------~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~ 201 (474)
T 4abn_A 129 AVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH-CK------NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ 201 (474)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-CC------CHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHH
T ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CC------CHHHHHHHHHHHHHhccCChhhhhhhHHHHHHH
Confidence 35667777777777777764 8999999999999985 45 258899999999999 999999999
Q ss_pred HHHHHhccCCChhhHHHHHHHHHHHHHhc--------CChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhh
Q 007648 446 FDKAVQVNYKTVDHLASIWCEWAEMELRH--------KNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRL 517 (594)
Q Consensus 446 ~~kal~~~p~~~~~~~~~~~~~~~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (594)
|++|++.+|+++ .+|+.+|.++... |++++|...|+++++.+|.. ..++.+
T Consensus 202 ~~~al~~~p~~~----~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~~~~~ 260 (474)
T 4abn_A 202 AKLAVQMDVLDG----RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA-----------------SSNPDL 260 (474)
T ss_dssp HHHHHHHCTTCH----HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG-----------------GGCHHH
T ss_pred HHHHHHhCCCCH----HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc-----------------ccCHHH
Confidence 999999999999 9999999999888 99999999999999999920 016789
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhhhcccCcc
Q 007648 518 WTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFLLHVPFTF 576 (594)
Q Consensus 518 ~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~ 576 (594)
|..++.++...|++++|+..|+++++++|+++.+|.+++.++...|++++|++.+....
T Consensus 261 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 261 HLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999997665543
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.73 E-value=7.6e-16 Score=147.78 Aligned_cols=211 Identities=13% Similarity=0.108 Sum_probs=175.7
Q ss_pred cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcc
Q 007648 245 TDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAE 324 (594)
Q Consensus 245 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (594)
|.+...+|..+|..+...|++++|...|++++...|.... .+.........
T Consensus 33 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~la~~~~~-------------------------- 83 (252)
T 2ho1_A 33 RDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSAD---AHAALAVVFQT-------------------------- 83 (252)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHH---HHHHHHHHHHH--------------------------
T ss_pred hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHH---HHHHHHHHHHH--------------------------
Confidence 4434678999999999999999999999999998877642 22222211110
Q ss_pred hhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CCchhH
Q 007648 325 DEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQ 402 (594)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a 402 (594)
.++...+...|++ ++..+|.+..+|..++.++. |++++|
T Consensus 84 ---------------------------~~~~~~A~~~~~~------------a~~~~~~~~~~~~~la~~~~~~g~~~~A 124 (252)
T 2ho1_A 84 ---------------------------EMEPKLADEEYRK------------ALASDSRNARVLNNYGGFLYEQKRYEEA 124 (252)
T ss_dssp ---------------------------TTCHHHHHHHHHH------------HHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ---------------------------cCCHHHHHHHHHH------------HHHHCcCcHHHHHHHHHHHHHHhHHHHH
Confidence 1234445666777 46778999999999988874 899999
Q ss_pred HHHHHHHHh--ccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHH
Q 007648 403 ILTYTEAVR--TVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGA 480 (594)
Q Consensus 403 ~~~y~~Ai~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A 480 (594)
+..|++++. . .| ....+|..+|.++...|++++|+..|+++++..|.++ .+|..++.++...|++++|
T Consensus 125 ~~~~~~~~~~~~-~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 125 YQRLLEASQDTL-YP-----ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQP----SVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHHHHHHTTCTT-CT-----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----HHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhCcc-Cc-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHcCCHHHH
Confidence 999999987 3 22 2578899999999999999999999999999999998 8999999999999999999
Q ss_pred HHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHH
Q 007648 481 LELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIII 553 (594)
Q Consensus 481 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~ 553 (594)
...++++++..|+ ++..+..++.++...|++++|...++++++..|+++.++.
T Consensus 195 ~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 195 RQYYDLFAQGGGQ--------------------NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHTTSCC--------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHHhCcC--------------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 9999999999994 5677888999999999999999999999999999998765
No 51
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.73 E-value=1e-16 Score=160.01 Aligned_cols=148 Identities=9% Similarity=0.048 Sum_probs=108.8
Q ss_pred HHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC--hhhHHHH
Q 007648 388 WHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKT--VDHLASI 463 (594)
Q Consensus 388 ~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~--~~~~~~~ 463 (594)
+..++.++ .|++++|...|++++...+..........++..+|.++...|++++|...+++++...|.. +.....+
T Consensus 186 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 265 (338)
T 3ro2_A 186 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 265 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence 33444443 3788999999999987532211011134588999999999999999999999999876554 2233468
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHh
Q 007648 464 WCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543 (594)
Q Consensus 464 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 543 (594)
+..++.++...|++++|...++++++..|... . .......+..++.++...|++++|...++++++
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--------~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 266 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--------D------RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--------C------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC--------C------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 88899999999999999999999999876410 0 001246788899999999999999999999999
Q ss_pred ccCCch
Q 007648 544 LRIATP 549 (594)
Q Consensus 544 ~~P~~~ 549 (594)
+.+..+
T Consensus 332 ~~~~~~ 337 (338)
T 3ro2_A 332 ISREVG 337 (338)
T ss_dssp C-----
T ss_pred HHHhhc
Confidence 887643
No 52
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.71 E-value=1.7e-16 Score=163.31 Aligned_cols=161 Identities=6% Similarity=-0.037 Sum_probs=124.7
Q ss_pred chhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh--hhHHHHHHHHHHHHHhcCC
Q 007648 399 PTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTV--DHLASIWCEWAEMELRHKN 476 (594)
Q Consensus 399 ~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~--~~~~~~~~~~~~~~~~~~~ 476 (594)
+++|...|++++..............++..+|.++...|++++|+..++++++..|..+ .....++..+|.++...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 45567777777764211110112457899999999999999999999999999866553 2333488899999999999
Q ss_pred hHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCc------hH
Q 007648 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT------PQ 550 (594)
Q Consensus 477 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~------~~ 550 (594)
+++|...+++++...|... .. ......+..++.++...|++++|...|+++++..|.. +.
T Consensus 243 ~~~A~~~~~~al~~~~~~~--------~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 308 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLK--------DR------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR 308 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTT--------CH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCc--------Cc------hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 9999999999998877410 00 0124678889999999999999999999999986554 66
Q ss_pred HHHHHHHHHHHhchhhhhhhccc
Q 007648 551 IIINYALLLEVWTLLHVFLLHVP 573 (594)
Q Consensus 551 ~~~~~~~~~~~~g~~~~a~~~~~ 573 (594)
++..++.++...|++++|+.++.
T Consensus 309 ~~~~la~~~~~~g~~~~A~~~~~ 331 (406)
T 3sf4_A 309 ACWSLGNAYTALGNHDQAMHFAE 331 (406)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 88999999999999999986544
No 53
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.71 E-value=3.8e-16 Score=161.56 Aligned_cols=300 Identities=13% Similarity=0.036 Sum_probs=207.7
Q ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCH--HHHHHHHHHHHHHcCCchHHHHHHHHHHHhhC------CC
Q 007648 100 KMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQH--DRIWEIYLRFVEQEGIPIETSLRVYRRYLKYD------PS 171 (594)
Q Consensus 100 ~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~--~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~------p~ 171 (594)
.....+...+..+...|+++.|+..|+++++..|.+.. ..+|..++..+...|++ ++|+..|++++... |.
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDY-NKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHccCchH
Confidence 33455667777888888888888888888888887411 14666777777778888 88888888888762 22
Q ss_pred CHH---HHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchh
Q 007648 172 HIE---DFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEV 248 (594)
Q Consensus 172 ~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 248 (594)
... .++.++...|++++|...|++++. .....++ .| ..
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---------------------~~~~~~~-----------------~~-~~ 165 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLT---------------------LARQLGD-----------------RL-SE 165 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------HHHHHTC-----------------HH-HH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------------------HHHHhhc-----------------hH-HH
Confidence 222 234567788899999998888762 0000000 01 12
Q ss_pred HHHHHHHHHHHHHhcc-----------------HHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 007648 249 GRLWTSLADYYIRREL-----------------FEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSV 311 (594)
Q Consensus 249 ~~~~~~la~~~~~~g~-----------------~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~ 311 (594)
..++..+|.++...|+ +++|...|++++...+....
T Consensus 166 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~--------------------------- 218 (411)
T 4a1s_A 166 GRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGD--------------------------- 218 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------
T ss_pred HHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCC---------------------------
Confidence 4688899999999999 55555555554433211110
Q ss_pred cccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHH
Q 007648 312 EEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRR 391 (594)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~ 391 (594)
.|....++..+
T Consensus 219 ---------------------------------------------------------------------~~~~~~~~~~l 229 (411)
T 4a1s_A 219 ---------------------------------------------------------------------RGAQGRACGNL 229 (411)
T ss_dssp ---------------------------------------------------------------------HHHHHHHHHHH
T ss_pred ---------------------------------------------------------------------HHHHHHHHHHH
Confidence 01112233444
Q ss_pred HHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh--hhHHHHHHHH
Q 007648 392 VKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTV--DHLASIWCEW 467 (594)
Q Consensus 392 ~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~--~~~~~~~~~~ 467 (594)
+.++ .|++++|...|++++...+..........++..+|.++...|++++|+..|++++...|... .....++..+
T Consensus 230 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 309 (411)
T 4a1s_A 230 GNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSL 309 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444 38899999999999985332110011345889999999999999999999999999876542 2234788899
Q ss_pred HHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCC
Q 007648 468 AEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA 547 (594)
Q Consensus 468 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 547 (594)
+.++...|++++|...+++++...+... . .......+..++.++...|++++|...|++++++.+.
T Consensus 310 a~~~~~~g~~~~A~~~~~~al~~~~~~~--------~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 310 GNTYTLLHEFNTAIEYHNRHLAIAQELG--------D------RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHT--------C------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCC--------C------hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999876410 0 0012467888999999999999999999999998865
Q ss_pred ch
Q 007648 548 TP 549 (594)
Q Consensus 548 ~~ 549 (594)
..
T Consensus 376 ~~ 377 (411)
T 4a1s_A 376 XX 377 (411)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.70 E-value=4.1e-15 Score=139.48 Aligned_cols=211 Identities=10% Similarity=0.070 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhh
Q 007648 249 GRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDI 328 (594)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 328 (594)
..+|..+|..+...|++++|++.|++++...|.... .+.........
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~------------------------------ 54 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNEL---AWLVRAEIYQY------------------------------ 54 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHH------------------------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchH---HHHHHHHHHHH------------------------------
Confidence 678999999999999999999999999999887642 22222211110
Q ss_pred HhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHh--c-CCchhHHHH
Q 007648 329 RLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF--E-GNPTKQILT 405 (594)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~-~~~~~a~~~ 405 (594)
.++...+...|++ ++..+|.+..+|..++.++ . |++++|...
T Consensus 55 -----------------------~~~~~~A~~~~~~------------a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~ 99 (225)
T 2vq2_A 55 -----------------------LKVNDKAQESFRQ------------ALSIKPDSAEINNNYGWFLCGRLNRPAESMAY 99 (225)
T ss_dssp -----------------------TTCHHHHHHHHHH------------HHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred -----------------------cCChHHHHHHHHH------------HHHhCCCChHHHHHHHHHHHHhcCcHHHHHHH
Confidence 1223445666777 4677899999999888876 6 889999999
Q ss_pred HHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHH
Q 007648 406 YTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMR 485 (594)
Q Consensus 406 y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 485 (594)
|++++. .+. . .....+|..+|.++...|++++|+..|+++++..|.++ .+|..++.++...|++++|...++
T Consensus 100 ~~~~~~-~~~-~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~ 171 (225)
T 2vq2_A 100 FDKALA-DPT-Y--PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFP----PAFKELARTKMLAGQLGDADYYFK 171 (225)
T ss_dssp HHHHHT-STT-C--SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHc-CcC-C--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc----hHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999998 221 1 12478899999999999999999999999999999998 889999999999999999999999
Q ss_pred HHhcCCc-hhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHH
Q 007648 486 RATAEPS-VEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINY 555 (594)
Q Consensus 486 ~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~ 555 (594)
++++..| + ++..+...+.++...|+.++|...++.+++.+|+++.+...+
T Consensus 172 ~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 172 KYQSRVEVL--------------------QADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHCSC--------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHhCCCC--------------------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9999888 5 456677778888899999999999999999999999876543
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.69 E-value=5.1e-15 Score=143.68 Aligned_cols=225 Identities=14% Similarity=0.080 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhh
Q 007648 249 GRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDI 328 (594)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 328 (594)
..+|..+|..+...|++++|...|++++...|.... .+...+.....
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~la~~~~~------------------------------ 89 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE---VFNYLGIYLTQ------------------------------ 89 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHH------------------------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHH------------------------------
Confidence 578999999999999999999999999999887652 23222211110
Q ss_pred HhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CCchhHHHHH
Q 007648 329 RLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTY 406 (594)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y 406 (594)
.++...++..|++ ++..+|.++.+|..++.++. |++++|+..|
T Consensus 90 -----------------------~~~~~~A~~~~~~------------al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 134 (275)
T 1xnf_A 90 -----------------------AGNFDAAYEAFDS------------VLELDPTYNYAHLNRGIALYYGGRDKLAQDDL 134 (275)
T ss_dssp -----------------------TTCHHHHHHHHHH------------HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------------------ccCHHHHHHHHHH------------HHhcCccccHHHHHHHHHHHHhccHHHHHHHH
Confidence 1234446667777 47789999999999998874 8999999999
Q ss_pred HHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007648 407 TEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRR 486 (594)
Q Consensus 407 ~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 486 (594)
++++... |. ........+ +....|++++|...+++++...|.+. ..|. .+.+....++.++|...+++
T Consensus 135 ~~a~~~~-~~-----~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~a~~~~~~ 202 (275)
T 1xnf_A 135 LAFYQDD-PN-----DPFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQ----WGWN-IVEFYLGNISEQTLMERLKA 202 (275)
T ss_dssp HHHHHHC-TT-----CHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCCS----THHH-HHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHhC-CC-----ChHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcch----HHHH-HHHHHHHhcCHHHHHHHHHH
Confidence 9999864 42 233333333 33567999999999999999988887 4444 55566678889999999999
Q ss_pred HhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhh
Q 007648 487 ATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLH 566 (594)
Q Consensus 487 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~ 566 (594)
++...|... ..++..|..++.++...|++++|+..|+++++.+|++... ++..+...|+++
T Consensus 203 ~~~~~~~~~----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~ 263 (275)
T 1xnf_A 203 DATDNTSLA----------------EHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLG 263 (275)
T ss_dssp HCCSHHHHH----------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHH
T ss_pred Hhccccccc----------------ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHH
Confidence 999988410 0135789999999999999999999999999999988554 467888999999
Q ss_pred hhhhcc
Q 007648 567 VFLLHV 572 (594)
Q Consensus 567 ~a~~~~ 572 (594)
+|++.+
T Consensus 264 ~a~~~~ 269 (275)
T 1xnf_A 264 QDQDDL 269 (275)
T ss_dssp HC----
T ss_pred hhHHHH
Confidence 999876
No 56
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.69 E-value=2.9e-16 Score=156.70 Aligned_cols=161 Identities=6% Similarity=-0.032 Sum_probs=122.6
Q ss_pred chhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC--hhhHHHHHHHHHHHHHhcCC
Q 007648 399 PTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKT--VDHLASIWCEWAEMELRHKN 476 (594)
Q Consensus 399 ~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~--~~~~~~~~~~~~~~~~~~~~ 476 (594)
+++|...|++++..............++..+|.++...|++++|+..++++++..|.. +.....++..++.++...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 3556677777765321110011145688999999999999999999999999876543 22333588999999999999
Q ss_pred hHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCc------hH
Q 007648 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT------PQ 550 (594)
Q Consensus 477 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~------~~ 550 (594)
+++|...+++++...|... .. ......+..++.++...|++++|...++++++..|.. +.
T Consensus 239 ~~~A~~~~~~al~~~~~~~--------~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLK--------DR------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTT--------CH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc--------ch------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 9999999999998876310 00 0124678889999999999999999999999986654 45
Q ss_pred HHHHHHHHHHHhchhhhhhhccc
Q 007648 551 IIINYALLLEVWTLLHVFLLHVP 573 (594)
Q Consensus 551 ~~~~~~~~~~~~g~~~~a~~~~~ 573 (594)
++..++.++...|++++|+.++.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHH
Confidence 88899999999999999986543
No 57
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.69 E-value=9e-17 Score=141.57 Aligned_cols=138 Identities=16% Similarity=0.048 Sum_probs=125.9
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCC
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~ 476 (594)
|++++|+..|++++.. +|. .+..++.+|.++...|++++|+..|+++++++|+++ .+|..+|.++.+.|+
T Consensus 11 ~~~e~ai~~~~~a~~~-~p~-----~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 11 ADVERYIASVQGSTPS-PRQ-----KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP----KAHRFLGLLYELEEN 80 (150)
T ss_dssp HHHHHHHHHHHHHSCS-HHH-----HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHhccc-Ccc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCc
Confidence 6789999999999874 342 466789999999999999999999999999999999 999999999999999
Q ss_pred hHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHH-HHHHHhccCCchHHHHHH
Q 007648 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAV-YERILDLRIATPQIIINY 555 (594)
Q Consensus 477 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~-~~~al~~~P~~~~~~~~~ 555 (594)
+++|+..|+++++++|+ ++.+|..++.++.+.|++++|.+. +++|++++|++|.++...
T Consensus 81 ~~~A~~~~~~al~~~p~--------------------~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~ 140 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT--------------------QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLK 140 (150)
T ss_dssp HHHHHHHHHHHHHHCTT--------------------CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCC--------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 99999999999999995 678999999999999999876665 699999999999999999
Q ss_pred HHHHHHhch
Q 007648 556 ALLLEVWTL 564 (594)
Q Consensus 556 ~~~~~~~g~ 564 (594)
+.++...|+
T Consensus 141 ~~ll~~~G~ 149 (150)
T 4ga2_A 141 EQLLDCEGE 149 (150)
T ss_dssp HHHHHTCCC
T ss_pred HHHHHHhCc
Confidence 999988875
No 58
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.68 E-value=4.3e-14 Score=137.55 Aligned_cols=121 Identities=19% Similarity=0.121 Sum_probs=102.9
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHh----cCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHH
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYET----YKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMEL 472 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~ 472 (594)
+++++|...|++|+..- ...++..+|.++.. .+++++|+..|+++++. .++ ..++.++.++.
T Consensus 128 ~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~----~a~~~lg~~~~ 193 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN--------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDS----PGCFNAGNMYH 193 (273)
T ss_dssp CCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH----HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH----HHHHHHHHHHH
Confidence 56788899999998842 35788999999988 89999999999999976 345 77888899888
Q ss_pred h----cCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHH----hCChHHHHHHHHHHHhc
Q 007648 473 R----HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEES----LGNLESTRAVYERILDL 544 (594)
Q Consensus 473 ~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~ 544 (594)
. .+++++|...|+++++..|. ..+..++.++.. .|++++|.++|++|++.
T Consensus 194 ~g~~~~~~~~~A~~~~~~a~~~~~~----------------------~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 194 HGEGATKNFKEALARYSKACELENG----------------------GGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHTTCH----------------------HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHhCCCH----------------------HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 8 89999999999999998763 667788888888 89999999999999999
Q ss_pred cCCchHHHH
Q 007648 545 RIATPQIII 553 (594)
Q Consensus 545 ~P~~~~~~~ 553 (594)
.|+++..+.
T Consensus 252 ~~~~a~~~l 260 (273)
T 1ouv_A 252 GAKGACDIL 260 (273)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 988766554
No 59
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.68 E-value=8.4e-16 Score=146.30 Aligned_cols=166 Identities=11% Similarity=0.110 Sum_probs=153.2
Q ss_pred hhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 007648 377 LLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNY 454 (594)
Q Consensus 377 ~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p 454 (594)
++..+|.+..+|..++.++. |++++|+..|++++... |. ...+|..+|.++...|++++|+..++++++..|
T Consensus 49 ~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 122 (243)
T 2q7f_A 49 AIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SS-----AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM 122 (243)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-Cc-----chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 57789999999999988874 89999999999999864 32 578999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHH
Q 007648 455 KTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLEST 534 (594)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 534 (594)
.++ .+|..++.++...|++++|...++++++..|+ ++.+|..++.++...|++++|
T Consensus 123 ~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------------------~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 123 ENG----DLFYMLGTVLVKLEQPKLALPYLQRAVELNEN--------------------DTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp CSH----HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT--------------------CHHHHHHHHHHHHHHTCCHHH
T ss_pred CCH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc--------------------cHHHHHHHHHHHHHcCCHHHH
Confidence 999 89999999999999999999999999999994 568899999999999999999
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhhhcc
Q 007648 535 RAVYERILDLRIATPQIIINYALLLEVWTLLHVFLLHV 572 (594)
Q Consensus 535 ~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~~~~ 572 (594)
...++++++..|+++.+|..++.++...|++++|+..+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 216 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEML 216 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 99999999999999999999999999999999997544
No 60
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.68 E-value=5.4e-15 Score=141.78 Aligned_cols=208 Identities=14% Similarity=0.026 Sum_probs=178.8
Q ss_pred hhCCCC-HHHHHHHHHHH-HcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhc
Q 007648 21 LRNPFS-LKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTM 98 (594)
Q Consensus 21 ~~~P~~-~~~w~~~~~~~-~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 98 (594)
..+|.+ ...|...+... ..|+++.|...|+++++..|.++.+|...+... ...|++++|...|+++++.+
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~--------~~~~~~~~A~~~~~~a~~~~ 101 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVF--------QTEMEPKLADEEYRKALASD 101 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHH--------HHTTCHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHHHC
Confidence 346765 78888888855 589999999999999999999999999888766 34589999999999999999
Q ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHH-
Q 007648 99 HKMPRIWIMYLETLTSQKFITKARRTFDRALC--ALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIED- 175 (594)
Q Consensus 99 P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~--~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~- 175 (594)
|.++.+|..++.++...|++++|...|++++. ..|.. ..+|..++......|++ ++|...|+++++..|.+...
T Consensus 102 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~ 178 (252)
T 2ho1_A 102 SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER--SRVFENLGLVSLQMKKP-AQAKEYFEKSLRLNRNQPSVA 178 (252)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTH--HHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCSCCHHHH
T ss_pred cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCccc--HHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCcccHHHH
Confidence 99999999999999999999999999999999 55653 67888888888899999 99999999999999998863
Q ss_pred --HHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHH
Q 007648 176 --FIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWT 253 (594)
Q Consensus 176 --~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 253 (594)
++.++...|++++|...|++++. . .|++ ...+.
T Consensus 179 ~~la~~~~~~g~~~~A~~~~~~~~~------------------------~--------------------~~~~-~~~~~ 213 (252)
T 2ho1_A 179 LEMADLLYKEREYVPARQYYDLFAQ------------------------G--------------------GGQN-ARSLL 213 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT------------------------T--------------------SCCC-HHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH------------------------h--------------------CcCc-HHHHH
Confidence 45678889999999999888763 1 1111 45788
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhhccccc
Q 007648 254 SLADYYIRRELFEKARDIFEEGMMTVVTVRD 284 (594)
Q Consensus 254 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 284 (594)
.++.++...|++++|...+++++...|++..
T Consensus 214 ~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 214 LGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 8899999999999999999999999988764
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.68 E-value=1e-15 Score=158.31 Aligned_cols=276 Identities=11% Similarity=-0.005 Sum_probs=205.1
Q ss_pred CchhHHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHhcccHHHHHHHHHHHHHhC------CCCCHHHHHHHHHHHHH
Q 007648 80 THPEYETLNNTFERALVTMHKMP----RIWIMYLETLTSQKFITKARRTFDRALCAL------PVTQHDRIWEIYLRFVE 149 (594)
Q Consensus 80 ~~~~~~~A~~~~~~al~~~P~~~----~lw~~y~~~~~~~~~~~~A~~~~~ral~~~------p~~~~~~~w~~~~~~~~ 149 (594)
..|++++|+..|+++++..|.++ .+|..++.++...|+++.|...|+++++.. |. ...+|..++.++.
T Consensus 60 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~l~~~~~ 137 (411)
T 4a1s_A 60 NAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG--EAKSSGNLGNTLK 137 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH--HHHHHHHHHHHHH
Confidence 45899999999999999999987 589999999999999999999999999873 32 2467777888888
Q ss_pred HcCCchHHHHHHHHHHHhhCC------CCHH---HHHHHHHhccc-----------------HHHHHHHHHHhhcCcccc
Q 007648 150 QEGIPIETSLRVYRRYLKYDP------SHIE---DFIEFLVKSKL-----------------WQEAAERLASVLNDDQFY 203 (594)
Q Consensus 150 ~~~~~~~~a~~~~~~~l~~~p------~~~~---~~~~~~~~~~~-----------------~~~a~~~~~~~~~~~~~~ 203 (594)
..|++ ++|...|++++...+ .... .++.++...|+ +++|...|++++.
T Consensus 138 ~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~----- 211 (411)
T 4a1s_A 138 VMGRF-DEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK----- 211 (411)
T ss_dssp HTTCH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH-----
T ss_pred HCCCH-HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH-----
Confidence 99999 999999999998743 2222 23456778888 7777777666551
Q ss_pred cccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccc
Q 007648 204 SIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVR 283 (594)
Q Consensus 204 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 283 (594)
+....++ +.....++..+|.++...|++++|...|++++...+...
T Consensus 212 ----------------~~~~~~~------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 212 ----------------LMRDLGD------------------RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp ----------------HHHHHTC------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ----------------HHHHcCC------------------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 0000010 011246899999999999999999999999998765432
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHH
Q 007648 284 DFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLE 363 (594)
Q Consensus 284 ~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (594)
.....
T Consensus 258 ~~~~~--------------------------------------------------------------------------- 262 (411)
T 4a1s_A 258 DRAAE--------------------------------------------------------------------------- 262 (411)
T ss_dssp CHHHH---------------------------------------------------------------------------
T ss_pred CcHHH---------------------------------------------------------------------------
Confidence 10000
Q ss_pred hhhhhchhhhhhhhhccCCCChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHH
Q 007648 364 HLMNRRPELANSVLLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIAN 441 (594)
Q Consensus 364 ~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 441 (594)
..++..++.++ .|++++|...|++++...+..........++..+|.++...|++++
T Consensus 263 ---------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 321 (411)
T 4a1s_A 263 ---------------------RRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNT 321 (411)
T ss_dssp ---------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ---------------------HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 01122223322 3788889999999987533211111136788999999999999999
Q ss_pred HHHHHHHHHhccCCC--hhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCch
Q 007648 442 ARVIFDKAVQVNYKT--VDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSV 493 (594)
Q Consensus 442 A~~~~~kal~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 493 (594)
|+..+++++...+.. ......++..++.++...|++++|...|+++++..+.
T Consensus 322 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 322 AIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 999999999975443 2233368889999999999999999999999999884
No 62
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.67 E-value=1.5e-14 Score=135.66 Aligned_cols=207 Identities=12% Similarity=-0.025 Sum_probs=177.2
Q ss_pred hCCCCHHHHHHHHHHH-HcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCC
Q 007648 22 RNPFSLKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHK 100 (594)
Q Consensus 22 ~~P~~~~~w~~~~~~~-~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~ 100 (594)
.+|.+...|...+... ..|+++.|...|+++++..|.++.+|...+... ...|++++|...|++++..+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~A~~~~~~a~~~~~~ 74 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIY--------QYLKVNDKAQESFRQALSIKPD 74 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH--------HHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHH--------HHcCChHHHHHHHHHHHHhCCC
Confidence 4688889999988855 589999999999999999999999998887766 3458999999999999999999
Q ss_pred ChHHHHHHHHHHHhc-ccHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHH--
Q 007648 101 MPRIWIMYLETLTSQ-KFITKARRTFDRALC--ALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIED-- 175 (594)
Q Consensus 101 ~~~lw~~y~~~~~~~-~~~~~A~~~~~ral~--~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~-- 175 (594)
++.+|..++.++... |+++.|...|+++++ ..|. ...+|..++......|++ ++|+..|+++++..|.+...
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~ 151 (225)
T 2vq2_A 75 SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPT--PYIANLNKGICSAKQGQF-GLAEAYLKRSLAAQPQFPPAFK 151 (225)
T ss_dssp CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSC--HHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHH
T ss_pred ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcc--hHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCchHHH
Confidence 999999999999999 999999999999999 3343 367888888888899999 99999999999999998863
Q ss_pred -HHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhcc-chhHHHHH
Q 007648 176 -FIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFT-DEVGRLWT 253 (594)
Q Consensus 176 -~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~ 253 (594)
++.++...|++++|...|++++. ..| ++ ...+.
T Consensus 152 ~la~~~~~~~~~~~A~~~~~~~~~--------------------------------------------~~~~~~-~~~~~ 186 (225)
T 2vq2_A 152 ELARTKMLAGQLGDADYYFKKYQS--------------------------------------------RVEVLQ-ADDLL 186 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH--------------------------------------------HHCSCC-HHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--------------------------------------------hCCCCC-HHHHH
Confidence 45678889999999998887762 112 11 35677
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhhccccc
Q 007648 254 SLADYYIRRELFEKARDIFEEGMMTVVTVRD 284 (594)
Q Consensus 254 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 284 (594)
.++.++...|+.+.|...++.++...|++..
T Consensus 187 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 187 LGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 7888889999999999999999988888764
No 63
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.67 E-value=2e-15 Score=142.83 Aligned_cols=162 Identities=12% Similarity=0.047 Sum_probs=141.6
Q ss_pred CCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhh
Q 007648 382 PHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDH 459 (594)
Q Consensus 382 p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~ 459 (594)
|.+++.|+..|..+. |++++|+..|++++...|+. ...+|..+|.++...|++++|+..|+++++.+|+++
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-- 76 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ-----DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA-- 76 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH--
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC-----CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH--
Confidence 466788999888774 89999999999999975522 467888899999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHH
Q 007648 460 LASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYE 539 (594)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 539 (594)
.+|..+|.++...|++++|...|+++++..|++... . ..-..+|...+.++...|++++|+..|+
T Consensus 77 --~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~----------~---~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 141 (228)
T 4i17_A 77 --NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATI----------E---KLYAIYYLKEGQKFQQAGNIEKAEENYK 141 (228)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH----------H---HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH----------H---HHHHHHHHHHhHHHHHhccHHHHHHHHH
Confidence 999999999999999999999999999999962100 0 0012568899999999999999999999
Q ss_pred HHHhccCC--chHHHHHHHHHHHHhchh
Q 007648 540 RILDLRIA--TPQIIINYALLLEVWTLL 565 (594)
Q Consensus 540 ~al~~~P~--~~~~~~~~~~~~~~~g~~ 565 (594)
++++++|+ ++.+|.++|.++...|..
T Consensus 142 ~al~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 142 HATDVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999988877
No 64
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.65 E-value=9.6e-15 Score=138.05 Aligned_cols=156 Identities=8% Similarity=0.016 Sum_probs=111.6
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhh---HHHHHHHHHHHHHh
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDH---LASIWCEWAEMELR 473 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~---~~~~~~~~~~~~~~ 473 (594)
|++++|+..|++|+.. .|. ...+|..+|.++...|++++|+..|+++++..|+++.. +..+|..+|.++..
T Consensus 56 ~~~~~A~~~~~~al~~-~p~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~ 129 (228)
T 4i17_A 56 KKYKEAADYFDIAIKK-NYN-----LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ 129 (228)
T ss_dssp TCHHHHHHHHHHHHHT-TCS-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHHHHHh-Ccc-----hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH
Confidence 6788899999999985 443 67899999999999999999999999999999998733 23458888888889
Q ss_pred cCChHHHHHHHHHHhcCCch--hH--hhhhh---ccCChh---hhHHhh-ccHhhHHHHHHHHHHhCChHHHHHHHHHHH
Q 007648 474 HKNFKGALELMRRATAEPSV--EV--RRRVA---ADGNEP---VQMKLH-KSLRLWTFYVDLEESLGNLESTRAVYERIL 542 (594)
Q Consensus 474 ~~~~~~A~~~~~~al~~~p~--~~--~~~~~---~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 542 (594)
.|++++|+..|+++++.+|+ .. +..++ +..... ....+. .++.. .........|.+++|+..|++++
T Consensus 130 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~A~~~~~~a~ 207 (228)
T 4i17_A 130 AGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEK--YASEKAKADAAFKKAVDYLGEAV 207 (228)
T ss_dssp TTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999996 43 11111 000000 000000 01111 11222334455699999999999
Q ss_pred hccCCchHHHHHHHHHHH
Q 007648 543 DLRIATPQIIINYALLLE 560 (594)
Q Consensus 543 ~~~P~~~~~~~~~~~~~~ 560 (594)
+++|+++.+...++.+..
T Consensus 208 ~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 208 TLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHCTTCHHHHHHHHHHHT
T ss_pred hcCCCCHHHHHHHHHHHH
Confidence 999999999988877653
No 65
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.65 E-value=2.4e-15 Score=165.33 Aligned_cols=121 Identities=13% Similarity=0.185 Sum_probs=87.6
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCC
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~ 476 (594)
|++++|+..|++|++. .|+ +..+|.++|.++...|++++|+..|++|++++|+++ .+|..+|.++...|+
T Consensus 57 g~~~eA~~~~~~Al~l-~P~-----~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~----~a~~~Lg~~~~~~g~ 126 (723)
T 4gyw_A 57 GKLQEALMHYKEAIRI-SPT-----FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFA----DAHSNLASIHKDSGN 126 (723)
T ss_dssp TCHHHHHHHHHHHHHH-CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHh-CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCC
Confidence 5667777777777774 342 567777777777777777777777777777777777 777777777777777
Q ss_pred hHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCC
Q 007648 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA 547 (594)
Q Consensus 477 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 547 (594)
+++|++.|++|++++|+ ++..|..++.++...|++++|.+.|++++++.|+
T Consensus 127 ~~eAi~~~~~Al~l~P~--------------------~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 127 IPEAIASYRTALKLKPD--------------------FPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHHHCSC--------------------CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC--------------------ChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 77777777777777774 4566777777777777777777777777776554
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.65 E-value=3.1e-15 Score=157.94 Aligned_cols=165 Identities=13% Similarity=0.122 Sum_probs=152.2
Q ss_pred hhccCCCChHHHHHHHHHhc--CCc-hhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 007648 377 LLRQNPHNVEQWHRRVKIFE--GNP-TKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVN 453 (594)
Q Consensus 377 ~l~~~p~~~~~~~~~~~~~~--~~~-~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~ 453 (594)
.....|.++.+|+.+|..+. |++ ++|+..|++|++. .|. ...+|..+|.++...|++++|+..|++|++.+
T Consensus 94 ~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~-~p~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~ 167 (474)
T 4abn_A 94 VLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL-EPE-----LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC 167 (474)
T ss_dssp HHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH-CTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred HhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh-CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 46778999999999999885 889 9999999999996 443 67999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc---------CChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHH
Q 007648 454 YKTVDHLASIWCEWAEMELRH---------KNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDL 524 (594)
Q Consensus 454 p~~~~~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (594)
|+ + .+|..++.++... |++++|+..|+++++.+|+ ++..|..++.+
T Consensus 168 p~-~----~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--------------------~~~~~~~lg~~ 222 (474)
T 4abn_A 168 KN-K----VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL--------------------DGRSWYILGNA 222 (474)
T ss_dssp CC-H----HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT--------------------CHHHHHHHHHH
T ss_pred CC-H----HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC--------------------CHHHHHHHHHH
Confidence 98 6 8899999999999 9999999999999999995 67899999999
Q ss_pred HHHh--------CChHHHHHHHHHHHhccC---CchHHHHHHHHHHHHhchhhhhhhcc
Q 007648 525 EESL--------GNLESTRAVYERILDLRI---ATPQIIINYALLLEVWTLLHVFLLHV 572 (594)
Q Consensus 525 ~~~~--------g~~~~A~~~~~~al~~~P---~~~~~~~~~~~~~~~~g~~~~a~~~~ 572 (594)
+... |++++|+..|+++++++| +++.+|.++|.++...|++++|+.++
T Consensus 223 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 281 (474)
T 4abn_A 223 YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGF 281 (474)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999 999999999999999999 99999999999999999999997443
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.63 E-value=3.2e-14 Score=145.83 Aligned_cols=321 Identities=10% Similarity=0.027 Sum_probs=206.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCCC---ChHHHHH--HHHHHHHhccCCCCCchhHHHHH-----------HHH
Q 007648 28 KLWWRYLVAKREAPFKKRFVIYERALKALPG---SYKLWHA--YLIERLSIVKNLPITHPEYETLN-----------NTF 91 (594)
Q Consensus 28 ~~w~~~~~~~~~~~~~~a~~~~e~al~~~P~---s~~lW~~--~~~~~~~~~~~~~~~~~~~~~A~-----------~~~ 91 (594)
..|..+|.. ++++.|..+++.+.+..+. +.++..- ++.+.... ..++++.+. ..+
T Consensus 17 ~~w~~~i~~---~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~------~~~~~~~~~~~~~e~~~~~~~~~ 87 (383)
T 3ulq_A 17 NEWYMYIRR---FSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNL------MLEYLEPLEKMRIEEQPRLSDLL 87 (383)
T ss_dssp HHHHHHHHT---TCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH------HHHHHGGGGGSCGGGSCCHHHHH
T ss_pred HHHHHHHHH---cCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH------HHhhcCcccccccccccchhhHH
Confidence 456655554 8999999999998776543 5555532 22222110 112223333 444
Q ss_pred HHHHHhcCCChHHHHH------HHHHHHhcccHHHHHHHHHHHHHhC---CCCC-HHHHHHHHHHHHHHcCCchHHHHHH
Q 007648 92 ERALVTMHKMPRIWIM------YLETLTSQKFITKARRTFDRALCAL---PVTQ-HDRIWEIYLRFVEQEGIPIETSLRV 161 (594)
Q Consensus 92 ~~al~~~P~~~~lw~~------y~~~~~~~~~~~~A~~~~~ral~~~---p~~~-~~~~w~~~~~~~~~~~~~~~~a~~~ 161 (594)
++. ...|.+...+.. .|.++...|+++.|...|++|++.. |... ...++..++.+...+|++ +.|...
T Consensus 88 ~~i-~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~-~~A~~~ 165 (383)
T 3ulq_A 88 LEI-DKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQT-YFSMDY 165 (383)
T ss_dssp HHH-HHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCH-HHHHHH
T ss_pred HHH-HhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH-HHHHHH
Confidence 443 334444343333 7777788888888888888888863 2210 124455555555566666 666666
Q ss_pred HHHHHhhCCCCHHHHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHH
Q 007648 162 YRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGI 241 (594)
Q Consensus 162 ~~~~l~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (594)
|+++++..+... +
T Consensus 166 ~~~al~~~~~~~----------------------------------------------------~--------------- 178 (383)
T 3ulq_A 166 ARQAYEIYKEHE----------------------------------------------------A--------------- 178 (383)
T ss_dssp HHHHHHHHHTCS----------------------------------------------------T---------------
T ss_pred HHHHHHHHHhCc----------------------------------------------------c---------------
Confidence 655554422211 0
Q ss_pred hhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccC
Q 007648 242 RKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHG 321 (594)
Q Consensus 242 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (594)
++.....++..+|..+...|++++|...|++++...+...+...
T Consensus 179 --~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------------------------------- 222 (383)
T 3ulq_A 179 --YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL---------------------------------- 222 (383)
T ss_dssp --THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH----------------------------------
T ss_pred --chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH----------------------------------
Confidence 00011457889999999999999999999999987654321000
Q ss_pred CcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHh--cCCc
Q 007648 322 SAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF--EGNP 399 (594)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~ 399 (594)
...++..+|.++ .|++
T Consensus 223 --------------------------------------------------------------~~~~~~~lg~~y~~~g~~ 240 (383)
T 3ulq_A 223 --------------------------------------------------------------MGRTLYNIGLCKNSQSQY 240 (383)
T ss_dssp --------------------------------------------------------------HHHHHHHHHHHHHHTTCH
T ss_pred --------------------------------------------------------------HHHHHHHHHHHHHHCCCH
Confidence 011223333333 3788
Q ss_pred hhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC--ChhhHHHHHHHHHHHHHhcCC-
Q 007648 400 TKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK--TVDHLASIWCEWAEMELRHKN- 476 (594)
Q Consensus 400 ~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~--~~~~~~~~~~~~~~~~~~~~~- 476 (594)
++|+..|++|+............+.++..+|.++...|++++|...+++|++..+. ++... ..+..++.++...|+
T Consensus 241 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~l~~~~~~~~~~ 319 (383)
T 3ulq_A 241 EDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL-SEFEFLKSLYLSGPDE 319 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH-HHHHHHHHHHTSSCCH
T ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHhCCCcH
Confidence 99999999999842111000125788999999999999999999999999997543 33222 235567778888888
Q ss_pred --hHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccC
Q 007648 477 --FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRI 546 (594)
Q Consensus 477 --~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P 546 (594)
+++|..+++++ ...|. ...++..++.++...|++++|...|++++++..
T Consensus 320 ~~~~~al~~~~~~-~~~~~--------------------~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 320 EAIQGFFDFLESK-MLYAD--------------------LEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHHHT-TCHHH--------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC-cCHHH--------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 78888888877 22221 246778899999999999999999999998654
No 68
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.63 E-value=1.7e-12 Score=145.82 Aligned_cols=338 Identities=11% Similarity=0.159 Sum_probs=205.4
Q ss_pred CchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHH
Q 007648 80 THPEYETLNNTFERALVTMHKMPRIWIMYLETLT-SQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETS 158 (594)
Q Consensus 80 ~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~-~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a 158 (594)
..|.+++|..+|+++- .+...+..+. ..+++++|.++++|+ . .+.+|..++......|+. ++|
T Consensus 1061 ~lglyEEAf~IYkKa~--------~~~~A~~VLie~i~nldrAiE~Aerv-----n--~p~vWsqLAKAql~~G~~-kEA 1124 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFD--------VNTSAVQVLIEHIGNLDRAYEFAERC-----N--EPAVWSQLAKAQLQKGMV-KEA 1124 (1630)
T ss_pred hCCCHHHHHHHHHHcC--------CHHHHHHHHHHHHhhHHHHHHHHHhc-----C--CHHHHHHHHHHHHhCCCH-HHH
Confidence 4466677777777752 1112112222 455666666666654 1 146677777776666766 777
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHH
Q 007648 159 LRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIR 238 (594)
Q Consensus 159 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 238 (594)
++.|.++ -+|+.....+..+.+.|++++|.+.|..+...... +.....+-..|.+. + ..+ .++
T Consensus 1125 IdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e----~~Idt~LafaYAKl----~------rle-ele 1187 (1630)
T 1xi4_A 1125 IDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE----SYVETELIFALAKT----N------RLA-ELE 1187 (1630)
T ss_pred HHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc----ccccHHHHHHHHhh----c------CHH-HHH
Confidence 7777654 22222223445666677777777777665521000 00000011111111 0 001 111
Q ss_pred HHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCccccccc
Q 007648 239 GGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDE 318 (594)
Q Consensus 239 ~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~ 318 (594)
..+. .| + ..-|...|+.+...|++++|...|..+- .+..+-..+...
T Consensus 1188 ~fI~-~~-n-~ad~~~iGd~le~eg~YeeA~~~Y~kA~-------ny~rLA~tLvkL----------------------- 1234 (1630)
T 1xi4_A 1188 EFIN-GP-N-NAHIQQVGDRCYDEKMYDAAKLLYNNVS-------NFGRLASTLVHL----------------------- 1234 (1630)
T ss_pred HHHh-CC-C-HHHHHHHHHHHHhcCCHHHHHHHHHhhh-------HHHHHHHHHHHh-----------------------
Confidence 1111 11 1 2457789999999999999999999962 111222212111
Q ss_pred ccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHh--c
Q 007648 319 EHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF--E 396 (594)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~ 396 (594)
+.+..+...++++ ++.++|...+... .
T Consensus 1235 ----------------------------------ge~q~AIEaarKA-----------------~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A 1235 ----------------------------------GEYQAAVDGARKA-----------------NSTRTWKEVCFACVDG 1263 (1630)
T ss_pred ----------------------------------CCHHHHHHHHHHh-----------------CCHHHHHHHHHHHhhh
Confidence 1133344445442 6678888765543 4
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHH--hc
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMEL--RH 474 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~--~~ 474 (594)
|++..|..+... +.. .++..-.++.+|...|.+++|+.+++++|+++|.+. .+|-.++.++. +-
T Consensus 1264 ~Ef~LA~~cgl~-Iiv---------~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~----gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1264 KEFRLAQMCGLH-IVV---------HADELEELINYYQDRGYFEELITMLEAALGLERAHM----GMFTELAILYSKFKP 1329 (1630)
T ss_pred hHHHHHHHHHHh-hhc---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHh----HHHHHHHHHHHhCCH
Confidence 678878877764 332 235556888999999999999999999999999888 56655555543 45
Q ss_pred CChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhc----------
Q 007648 475 KNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL---------- 544 (594)
Q Consensus 475 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---------- 544 (594)
++.-++.+.|...+..+|- .+.-....+|..+.-+|.+.|+++.|....-.....
T Consensus 1330 eklmEhlk~f~~rini~k~---------------~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~ 1394 (1630)
T 1xi4_A 1330 QKMREHLELFWSRVNIPKV---------------LRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDI 1394 (1630)
T ss_pred HHHHHHHHHHHHhcccchH---------------hHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHH
Confidence 6788899999999888772 011135689999999999999999998444333322
Q ss_pred --cCCchHHHHHHHHHHHHhc
Q 007648 545 --RIATPQIIINYALLLEVWT 563 (594)
Q Consensus 545 --~P~~~~~~~~~~~~~~~~g 563 (594)
++.+++++++-+.||....
T Consensus 1395 i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1395 ITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred hcccccHHHHHHHHHHHHhhC
Confidence 6889999999999998666
No 69
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.62 E-value=1.1e-13 Score=145.10 Aligned_cols=353 Identities=13% Similarity=0.058 Sum_probs=215.2
Q ss_pred CchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccH---HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcC----
Q 007648 80 THPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFI---TKARRTFDRALCALPVTQHDRIWEIYLRFVEQEG---- 152 (594)
Q Consensus 80 ~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~---~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~---- 152 (594)
..|++++|...|+++.+. .++..+..++.++...|+. ++|...|++++..+| ..+..++.+....+
T Consensus 15 ~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~-----~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 15 KRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSP-----RAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHH--TCCTGGGTCC---------------------------------CHHHHHHHHHTC--CCH
T ss_pred hCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCH-----HHHHHHHHHHHhCCCCCC
Confidence 358999999999999765 5678888999999888887 999999999997633 44556666333333
Q ss_pred -CchHHHHHHHHHHHhhCCCCHH-HHHHHHHhcccHHH---HHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccc
Q 007648 153 -IPIETSLRVYRRYLKYDPSHIE-DFIEFLVKSKLWQE---AAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATE 227 (594)
Q Consensus 153 -~~~~~a~~~~~~~l~~~p~~~~-~~~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 227 (594)
++ ++|...|+++++..+.... .+..++...+...+ +...+.++.. .+ ....+..+..+.......
T Consensus 88 ~~~-~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~-------~g--~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 88 AEH-HEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA-------AG--YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp HHH-HHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH-------HT--CTTHHHHHHHHHHHHTCG
T ss_pred cCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-------CC--CHHHHHHHHHHHHcCCCc
Confidence 45 7899999999987655543 45566665554333 3333333321 00 112233333333222110
Q ss_pred cc-cCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhc---cHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHH
Q 007648 228 IS-GLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRE---LFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAK 303 (594)
Q Consensus 228 ~~-~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~ 303 (594)
.. ...+..+++.+....| .++..+|.++...| +.++|...|++++...|.... .++.....+..
T Consensus 158 ~~~~~~a~~~~~~a~~~~~----~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~--~~~~Lg~~y~~------ 225 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTD----ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ--RVDSVARVLGD------ 225 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCT----THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH--HHHHHHHHHTC------
T ss_pred ccCHHHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHhC------
Confidence 00 0012234444444444 47888999998888 888899999998887665542 11111111100
Q ss_pred hcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCC
Q 007648 304 MAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPH 383 (594)
Q Consensus 304 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 383 (594)
.. ....+...++..|+++ . |.
T Consensus 226 ------------------------------------------g~--~~~~d~~~A~~~~~~a------------a---~g 246 (452)
T 3e4b_A 226 ------------------------------------------AT--LGTPDEKTAQALLEKI------------A---PG 246 (452)
T ss_dssp ------------------------------------------GG--GSSCCHHHHHHHHHHH------------G---GG
T ss_pred ------------------------------------------CC--CCCCCHHHHHHHHHHH------------c---CC
Confidence 00 1245777888888773 3 88
Q ss_pred ChHHHHHHHHH-h----cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhcc
Q 007648 384 NVEQWHRRVKI-F----EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYK-----DIANARVIFDKAVQVN 453 (594)
Q Consensus 384 ~~~~~~~~~~~-~----~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~-----~~~~A~~~~~kal~~~ 453 (594)
++.+++.++.+ + .+++++|...|++|+..- .+.+++.+|.++. .| ++++|+..|++|.
T Consensus 247 ~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--- 314 (452)
T 3e4b_A 247 YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--- 314 (452)
T ss_dssp STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---
Confidence 99999999887 4 268999999999998631 5788899998887 55 8999999999998
Q ss_pred CCChhhHHHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHH--
Q 007648 454 YKTVDHLASIWCEWAEMELR----HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEES-- 527 (594)
Q Consensus 454 p~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 527 (594)
|.++ ..++.+|.++.. .+++++|..+|++|.+... +.....++.++..
T Consensus 315 ~g~~----~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~----------------------~~A~~~Lg~~y~~G~ 368 (452)
T 3e4b_A 315 GREV----AADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ----------------------NSADFAIAQLFSQGK 368 (452)
T ss_dssp TTCH----HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC----------------------TTHHHHHHHHHHSCT
T ss_pred CCCH----HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh----------------------HHHHHHHHHHHHhCC
Confidence 8888 888888887765 3388999999999987643 3667777887764
Q ss_pred --hCChHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 007648 528 --LGNLESTRAVYERILDLRIATPQIIINYALLLE 560 (594)
Q Consensus 528 --~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~ 560 (594)
..++++|..+|++|.+.. ++.+...+..+..
T Consensus 369 g~~~d~~~A~~~~~~A~~~g--~~~a~~~l~~l~~ 401 (452)
T 3e4b_A 369 GTKPDPLNAYVFSQLAKAQD--TPEANDLATQLEA 401 (452)
T ss_dssp TBCCCHHHHHHHHHHHHTTC--CHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH
Confidence 348899999999999865 4555556666643
No 70
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.61 E-value=2.8e-13 Score=141.98 Aligned_cols=375 Identities=11% Similarity=0.001 Sum_probs=228.2
Q ss_pred HcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhH---HHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 007648 38 REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEY---ETLNNTFERALVTMHKMPRIWIMYLETLTS 114 (594)
Q Consensus 38 ~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~---~~A~~~~~~al~~~P~~~~lw~~y~~~~~~ 114 (594)
..|+++.|...|+++.+. .+++.+..+.... ...|+. ++|...|++|+.. ++..+..++.++..
T Consensus 15 ~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y--------~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 15 KRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQ--------VGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHH--TCCTGGGTCC---------------------------------------CHHHHHHHHHT
T ss_pred hCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH--------HccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 478999999999999876 3455554433332 223444 9999999999976 67888999996655
Q ss_pred cc-----cHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHhhCCCCH-HHHHHHHHhcc--
Q 007648 115 QK-----FITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIP--IETSLRVYRRYLKYDPSHI-EDFIEFLVKSK-- 184 (594)
Q Consensus 115 ~~-----~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~--~~~a~~~~~~~l~~~p~~~-~~~~~~~~~~~-- 184 (594)
.+ ++++|...|++++...+. ..+..++.++...+.. ..++.+.+.++........ ..+..++...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~----~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG----NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS----SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCc
Confidence 44 789999999999986543 3455566665543332 0356666666665433333 24556666665
Q ss_pred --cHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Q 007648 185 --LWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRR 262 (594)
Q Consensus 185 --~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~ 262 (594)
..+++..+++.+.... ...+..+.......+...+...+...++++....|.. ...+..+|.+|...
T Consensus 158 ~~~~~~a~~~~~~a~~~~----------~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~-a~~~~~Lg~~y~~g 226 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTT----------DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT-AQRVDSVARVLGDA 226 (452)
T ss_dssp GGGHHHHHHHHHHHTTTC----------TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHTCG
T ss_pred ccCHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCC
Confidence 4455555555554211 1134444444444331111123345677777776654 56668999999533
Q ss_pred c----cHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHH
Q 007648 263 E----LFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAE 338 (594)
Q Consensus 263 g----~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (594)
. ++++|...|+++. |.+.. ..+.....+...
T Consensus 227 ~~~~~d~~~A~~~~~~aa---~g~~~--a~~~Lg~~~~~~---------------------------------------- 261 (452)
T 3e4b_A 227 TLGTPDEKTAQALLEKIA---PGYPA--SWVSLAQLLYDF---------------------------------------- 261 (452)
T ss_dssp GGSSCCHHHHHHHHHHHG---GGSTH--HHHHHHHHHHHS----------------------------------------
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHH--HHHHHHHHHHhC----------------------------------------
Confidence 2 7899999999998 55553 222111110100
Q ss_pred HHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc-C-----CchhHHHHHHHHHhc
Q 007648 339 FVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE-G-----NPTKQILTYTEAVRT 412 (594)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~-~-----~~~~a~~~y~~Ai~~ 412 (594)
...++...++..|+++ . .+.++.+++.++.++. | ++++|+..|++|.
T Consensus 262 -----------~~~~d~~~A~~~~~~A------------a--~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-- 314 (452)
T 3e4b_A 262 -----------PELGDVEQMMKYLDNG------------R--AADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-- 314 (452)
T ss_dssp -----------GGGCCHHHHHHHHHHH------------H--HTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT--
T ss_pred -----------CCCCCHHHHHHHHHHH------------H--HCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh--
Confidence 0123567788888884 2 4568999999999885 4 8999999999998
Q ss_pred cCCCcccCCchHHHHHHHHHHHh----cCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHh----cCChHHHHHHH
Q 007648 413 VDPMKAVGKPHTLWVAFAKLYET----YKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELR----HKNFKGALELM 484 (594)
Q Consensus 413 ~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~ 484 (594)
+. .+.+++.+|.++.. ..++++|+..|++|.+ +.++ ...+.++.++.. .+++++|..+|
T Consensus 315 -~g------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~----~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 381 (452)
T 3e4b_A 315 -GR------EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQN----SADFAIAQLFSQGKGTKPDPLNAYVFS 381 (452)
T ss_dssp -TT------CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCT----THHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred -CC------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChH----HHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 22 57899999999886 3499999999999996 4456 677888888765 35899999999
Q ss_pred HHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHH--hCChHHHHHHHHHHHhccCC
Q 007648 485 RRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEES--LGNLESTRAVYERILDLRIA 547 (594)
Q Consensus 485 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~A~~~~~~al~~~P~ 547 (594)
++|.+..+. .....+..+... .++.++|....++..+..|.
T Consensus 382 ~~A~~~g~~----------------------~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~~ 424 (452)
T 3e4b_A 382 QLAKAQDTP----------------------EANDLATQLEAPLTPAQRAEGQRLVQQELAARGT 424 (452)
T ss_dssp HHHHTTCCH----------------------HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCH----------------------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence 999998763 222333444322 23556777777777665544
No 71
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.61 E-value=2.6e-12 Score=144.37 Aligned_cols=118 Identities=8% Similarity=0.067 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccC
Q 007648 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADG 503 (594)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 503 (594)
..|...+......|++..|+.+... +..+| +....++.++.+.|.+++|+.++++|+.++|.
T Consensus 1251 ~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~-------deLeeli~yYe~~G~feEAI~LlE~aL~Lera---------- 1312 (1630)
T 1xi4_A 1251 RTWKEVCFACVDGKEFRLAQMCGLH-IVVHA-------DELEELINYYQDRGYFEELITMLEAALGLERA---------- 1312 (1630)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHh-hhcCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhccChh----------
Confidence 4444444444444444444444432 22233 33336666777889999999999999999884
Q ss_pred ChhhhHHhhccHhhHHHHHHHHHH--hCChHHHHHHHHHHHhccC-----CchHHHHHHHHHHHHhchhhhhh
Q 007648 504 NEPVQMKLHKSLRLWTFYVDLEES--LGNLESTRAVYERILDLRI-----ATPQIIINYALLLEVWTLLHVFL 569 (594)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~A~~~~~~al~~~P-----~~~~~~~~~~~~~~~~g~~~~a~ 569 (594)
+..+|..++.++.+ -++.-++.+.|+..+.+.| +++..|..+..+|.+.|+++.|+
T Consensus 1313 ----------H~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1313 ----------HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred ----------HhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 44666666666655 4567788889999888877 78899999999999999999997
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.60 E-value=1.9e-14 Score=130.31 Aligned_cols=159 Identities=9% Similarity=0.091 Sum_probs=141.7
Q ss_pred hHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHH
Q 007648 385 VEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLAS 462 (594)
Q Consensus 385 ~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~ 462 (594)
...+..++..+ .|++++|+..|++++... |. ...+|..+|.++...|++++|+..++++++..|.++ .
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~ 77 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AF-----DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV----K 77 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----H
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----H
Confidence 45666666665 389999999999998753 32 578899999999999999999999999999999998 8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHH
Q 007648 463 IWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERIL 542 (594)
Q Consensus 463 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 542 (594)
+|..++.++...|++++|...++++++..|+ ++.+|..++.++...|++++|...+++++
T Consensus 78 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 137 (186)
T 3as5_A 78 VATVLGLTYVQVQKYDLAVPLLIKVAEANPI--------------------NFNVRFRLGVALDNLGRFDEAIDSFKIAL 137 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH--------------------hHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999984 56888999999999999999999999999
Q ss_pred hccCCchHHHHHHHHHHHHhchhhhhhhccc
Q 007648 543 DLRIATPQIIINYALLLEVWTLLHVFLLHVP 573 (594)
Q Consensus 543 ~~~P~~~~~~~~~~~~~~~~g~~~~a~~~~~ 573 (594)
+..|+++.++..++.++...|++++|+..+.
T Consensus 138 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 138 GLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999985543
No 73
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.59 E-value=6.7e-14 Score=135.28 Aligned_cols=157 Identities=11% Similarity=-0.075 Sum_probs=127.8
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHh--------cCCHHHHHHHHHHHHhccCCChhhHHHH-----
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYET--------YKDIANARVIFDKAVQVNYKTVDHLASI----- 463 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~--------~~~~~~A~~~~~kal~~~p~~~~~~~~~----- 463 (594)
|++++|+..|++++...|.. .....+++.+|.++.. .|++++|+..|+++++..|+++......
T Consensus 66 ~~~~~A~~~~~~~l~~~p~~---~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~ 142 (261)
T 3qky_A 66 KEYLLAASEYERFIQIYQID---PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRE 142 (261)
T ss_dssp TCHHHHHHHHHHHHHHCTTC---TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHCCCC---chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHH
Confidence 78889999999999864322 1257889999999998 9999999999999999999997332111
Q ss_pred --------HHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHh-------
Q 007648 464 --------WCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESL------- 528 (594)
Q Consensus 464 --------~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 528 (594)
++.+|.++.+.|++++|+..|+++++..|+.. ..+..+...+.++..+
T Consensus 143 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------~~~~a~~~l~~~~~~~g~~~~~~ 205 (261)
T 3qky_A 143 LRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTP-----------------WADDALVGAMRAYIAYAEQSVRA 205 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST-----------------THHHHHHHHHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCc-----------------hHHHHHHHHHHHHHHhcccchhh
Confidence 27789999999999999999999999999521 1346777888888766
Q ss_pred ---CChHHHHHHHHHHHhccCCchH---HHHHHHHHHHHhchhhhhhhccc
Q 007648 529 ---GNLESTRAVYERILDLRIATPQ---IIINYALLLEVWTLLHVFLLHVP 573 (594)
Q Consensus 529 ---g~~~~A~~~~~~al~~~P~~~~---~~~~~~~~~~~~g~~~~a~~~~~ 573 (594)
|++++|+..|+++++..|+++. +...++.++...|+++.+....+
T Consensus 206 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~ 256 (261)
T 3qky_A 206 RQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDASLAQ 256 (261)
T ss_dssp GHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCTTCCC
T ss_pred cccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhhHHhh
Confidence 8999999999999999999974 55677888888899888776544
No 74
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.59 E-value=1.4e-14 Score=123.27 Aligned_cols=114 Identities=12% Similarity=0.043 Sum_probs=107.2
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhc
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 501 (594)
.+..|...|..+.+.|++++|+..|++|++.+|.++ .+|..+|.++.+.|++++|+..|+++++++|+
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------- 79 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA----ILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-------- 79 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh--------
Confidence 578888999999999999999999999999999999 99999999999999999999999999999995
Q ss_pred cCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 007648 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLL 559 (594)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~ 559 (594)
++..|..+|.++..+|++++|+..|+++++++|++++++.+++.++
T Consensus 80 ------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 80 ------------FIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred ------------hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 6788999999999999999999999999999999999999988764
No 75
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=5.5e-13 Score=129.60 Aligned_cols=219 Identities=13% Similarity=0.055 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhh
Q 007648 249 GRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDI 328 (594)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 328 (594)
+.++..+|..+...|++++|...|+++++ |.+.. ..+.....+... .+
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~--a~~~lg~~~~~g--------~~-------------------- 53 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENS--GCFNLGVLYYQG--------QG-------------------- 53 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHH--HHHHHHHHHHHT--------SS--------------------
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHH--HHHHHHHHHHcC--------CC--------------------
Confidence 57899999999999999999999999998 33331 111111111100 00
Q ss_pred HhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHh------cCCchhH
Q 007648 329 RLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF------EGNPTKQ 402 (594)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~------~~~~~~a 402 (594)
..++...++..|+++ +.. +++.+++.++.++ .+++++|
T Consensus 54 ----------------------~~~~~~~A~~~~~~a------------~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A 97 (273)
T 1ouv_A 54 ----------------------VEKNLKKAASFYAKA------------CDL--NYSNGCHLLGNLYYSGQGVSQNTNKA 97 (273)
T ss_dssp ----------------------SCCCHHHHHHHHHHH------------HHT--TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred ----------------------cCCCHHHHHHHHHHH------------HHC--CCHHHHHHHHHHHhCCCCcccCHHHH
Confidence 012344566677774 333 3788898888876 4689999
Q ss_pred HHHHHHHHhccCCCcccCCchHHHHHHHHHHHh----cCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHh----c
Q 007648 403 ILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYET----YKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELR----H 474 (594)
Q Consensus 403 ~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~----~ 474 (594)
+..|++|+..- .+.++..+|.++.. .+++++|+..|+++++.. ++ ..+..++.++.. .
T Consensus 98 ~~~~~~a~~~~--------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~----~a~~~lg~~~~~~~~~~ 163 (273)
T 1ouv_A 98 LQYYSKACDLK--------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DG----DGCTILGSLYDAGRGTP 163 (273)
T ss_dssp HHHHHHHHHTT--------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CH----HHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHcC--------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cH----HHHHHHHHHHHcCCCCC
Confidence 99999999841 47899999999999 999999999999999875 55 778888988887 8
Q ss_pred CChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHH----hCChHHHHHHHHHHHhccCCchH
Q 007648 475 KNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEES----LGNLESTRAVYERILDLRIATPQ 550 (594)
Q Consensus 475 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~P~~~~ 550 (594)
+++++|...|+++++..+ +..+..++.++.. .|++++|+.+|+++++..| +.
T Consensus 164 ~~~~~A~~~~~~a~~~~~----------------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~ 219 (273)
T 1ouv_A 164 KDLKKALASYDKACDLKD----------------------SPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GG 219 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC----------------------HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HH
T ss_pred CCHHHHHHHHHHHHHCCC----------------------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HH
Confidence 999999999999998854 3677888999999 9999999999999999866 88
Q ss_pred HHHHHHHHHHH----hchhhhhhhccc
Q 007648 551 IIINYALLLEV----WTLLHVFLLHVP 573 (594)
Q Consensus 551 ~~~~~~~~~~~----~g~~~~a~~~~~ 573 (594)
++.+++.++.. .|++++|+..+.
T Consensus 220 a~~~l~~~~~~g~~~~~~~~~A~~~~~ 246 (273)
T 1ouv_A 220 GCFNLGAMQYNGEGVTRNEKQAIENFK 246 (273)
T ss_dssp HHHHHHHHHHTTSSSSCCSTTHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 99999999998 899999986553
No 76
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.58 E-value=1.3e-13 Score=141.21 Aligned_cols=158 Identities=11% Similarity=-0.002 Sum_probs=123.1
Q ss_pred cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----c-CCChhhHHHHHHHHHH
Q 007648 396 EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQV-----N-YKTVDHLASIWCEWAE 469 (594)
Q Consensus 396 ~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~-----~-p~~~~~~~~~~~~~~~ 469 (594)
.|++++|...|++|+...+..........++..+|.++...|++++|+..|++|+++ + |..+ .++..+|.
T Consensus 197 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~l~~ 272 (383)
T 3ulq_A 197 LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP----QAYFLITQ 272 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH----HHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH----HHHHHHHH
Confidence 388899999999999753221111123568999999999999999999999999994 3 4444 78999999
Q ss_pred HHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCC---hHHHHHHHHHHHhccC
Q 007648 470 MELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN---LESTRAVYERILDLRI 546 (594)
Q Consensus 470 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~~P 546 (594)
++...|++++|...++++++..+... +. .....+..++.++...|+ +++|...++++ ...|
T Consensus 273 ~~~~~g~~~~A~~~~~~al~~~~~~~--------~~-------~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~ 336 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYHSKGMAYSQKAG--------DV-------IYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYA 336 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHT--------CH-------HHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcC--------CH-------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHH
Confidence 99999999999999999999865310 00 011224567888888998 88899999886 5566
Q ss_pred CchHHHHHHHHHHHHhchhhhhhhccc
Q 007648 547 ATPQIIINYALLLEVWTLLHVFLLHVP 573 (594)
Q Consensus 547 ~~~~~~~~~~~~~~~~g~~~~a~~~~~ 573 (594)
....++..+|.++...|++++|+.++.
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~ 363 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFL 363 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777889999999999999999986543
No 77
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.57 E-value=5.1e-14 Score=136.10 Aligned_cols=183 Identities=12% Similarity=0.039 Sum_probs=144.9
Q ss_pred hccCCCChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 007648 378 LRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK 455 (594)
Q Consensus 378 l~~~p~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~ 455 (594)
...+|.+++.++.+|..+ .|++++|+..|++++... |... ....+|+.+|.++...|++++|+..|+++++..|+
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~ 84 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHE--WAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI 84 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCST--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCc--chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC
Confidence 456789999999988876 489999999999999864 4321 13789999999999999999999999999999997
Q ss_pred ChhhHHHHHHHHHHHHHh--------cCChHHHHHHHHHHhcCCchhH--h---hhhhccCChhhhHHhhccHhhHHHHH
Q 007648 456 TVDHLASIWCEWAEMELR--------HKNFKGALELMRRATAEPSVEV--R---RRVAADGNEPVQMKLHKSLRLWTFYV 522 (594)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~--------~~~~~~A~~~~~~al~~~p~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (594)
++.. ..+++.+|.++.. .|++++|+..|+++++..|++. . .++.. .. ..-...+...+
T Consensus 85 ~~~~-~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~------~~--~~~~~~~~~la 155 (261)
T 3qky_A 85 DPRV-PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRE------LR--AKLARKQYEAA 155 (261)
T ss_dssp CTTH-HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH------HH--HHHHHHHHHHH
T ss_pred Cchh-HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHH------HH--HHHHHHHHHHH
Confidence 7532 2678889999888 9999999999999999999632 0 00000 00 01123357889
Q ss_pred HHHHHhCChHHHHHHHHHHHhccCC---chHHHHHHHHHHHHh----------chhhhhhhcc
Q 007648 523 DLEESLGNLESTRAVYERILDLRIA---TPQIIINYALLLEVW----------TLLHVFLLHV 572 (594)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~al~~~P~---~~~~~~~~~~~~~~~----------g~~~~a~~~~ 572 (594)
.++...|++++|+..|+++++..|+ .+.++..+|.++... |++++|+.++
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~ 218 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELY 218 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHH
Confidence 9999999999999999999999998 557999999999877 8888887443
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.56 E-value=1.9e-13 Score=123.57 Aligned_cols=140 Identities=9% Similarity=0.035 Sum_probs=118.5
Q ss_pred CCCChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChh
Q 007648 381 NPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVD 458 (594)
Q Consensus 381 ~p~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~ 458 (594)
+|.+..++..++.++ .|++++|...|++++...|. ...+|..+|.++...|++++|...++++++..|.++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~- 110 (186)
T 3as5_A 38 DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINF- 110 (186)
T ss_dssp TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-
T ss_pred CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhH-
Confidence 344444444444443 37788899999999986433 578899999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHH
Q 007648 459 HLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVY 538 (594)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 538 (594)
.+|..++.++...|++++|...++++++..|+ ++..|..++.++...|++++|...+
T Consensus 111 ---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------------------~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 111 ---NVRFRLGVALDNLGRFDEAIDSFKIALGLRPN--------------------EGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc--------------------chHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88999999999999999999999999999884 5688899999999999999999999
Q ss_pred HHHHhccCCchH
Q 007648 539 ERILDLRIATPQ 550 (594)
Q Consensus 539 ~~al~~~P~~~~ 550 (594)
+++++..|+++.
T Consensus 168 ~~~~~~~~~~~~ 179 (186)
T 3as5_A 168 KKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHCCCG
T ss_pred HHHHHcCCCchh
Confidence 999999998764
No 79
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.56 E-value=1.6e-14 Score=159.44 Aligned_cols=164 Identities=10% Similarity=-0.069 Sum_probs=147.4
Q ss_pred ccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC
Q 007648 379 RQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKT 456 (594)
Q Consensus 379 ~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~ 456 (594)
..+|++.++|+.++..+. |++++|+..|++|++.. |+ ...+|..+|.++...|++++|+..|++|++.+|++
T Consensus 427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 500 (681)
T 2pzi_A 427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GW-----RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE 500 (681)
T ss_dssp -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CC-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cc-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 788999999999988874 89999999999999964 43 67999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHH
Q 007648 457 VDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRA 536 (594)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 536 (594)
+ .+|+.+|.++.+.|++++ +..|++|++.+|+ ++..|..++.++.+.|++++|++
T Consensus 501 ~----~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~--------------------~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 501 L----APKLALAATAELAGNTDE-HKFYQTVWSTNDG--------------------VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp S----HHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT--------------------CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred h----HHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc--------------------hHHHHHHHHHHHHHcCCHHHHHH
Confidence 9 999999999999999999 9999999999995 67899999999999999999999
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHHh--------chhhhhhhccc
Q 007648 537 VYERILDLRIATPQIIINYALLLEVW--------TLLHVFLLHVP 573 (594)
Q Consensus 537 ~~~~al~~~P~~~~~~~~~~~~~~~~--------g~~~~a~~~~~ 573 (594)
.|++|++++|+++.+|.+++.++... +++.+|+..++
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~ 600 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVE 600 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999998664 44677765443
No 80
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.55 E-value=2.2e-14 Score=129.79 Aligned_cols=162 Identities=12% Similarity=0.046 Sum_probs=134.2
Q ss_pred CCCChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChh
Q 007648 381 NPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVD 458 (594)
Q Consensus 381 ~p~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~ 458 (594)
||...+.++..+..+ .|++++|...|++++... |+ .+.+|..+|.++...|++++|+..|++++...| ++
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~-----~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~- 73 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDEL-QS-----RGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN- 73 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HT-----SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH-
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CC-----cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch-
Confidence 455566677777665 489999999999999863 43 679999999999999999999999999999999 87
Q ss_pred hHHHHHHHHHHHH-HhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHH
Q 007648 459 HLASIWCEWAEME-LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAV 537 (594)
Q Consensus 459 ~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 537 (594)
.++...+.+. .+.++...|+..|+++++.+|+ ++..|..++.++...|++++|+..
T Consensus 74 ---~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~--------------------~~~~~~~la~~~~~~g~~~~A~~~ 130 (176)
T 2r5s_A 74 ---SYKSLIAKLELHQQAAESPELKRLEQELAANPD--------------------NFELACELAVQYNQVGRDEEALEL 130 (176)
T ss_dssp ---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT--------------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---HHHHHHHHHHHHhhcccchHHHHHHHHHHhCCC--------------------CHHHHHHHHHHHHHcccHHHHHHH
Confidence 5444444432 2334445689999999999995 678999999999999999999999
Q ss_pred HHHHHhccCCc--hHHHHHHHHHHHHhchhhhhhhccc
Q 007648 538 YERILDLRIAT--PQIIINYALLLEVWTLLHVFLLHVP 573 (594)
Q Consensus 538 ~~~al~~~P~~--~~~~~~~~~~~~~~g~~~~a~~~~~ 573 (594)
|+++++.+|+. +.++.+++.++...|+.++|+.+|.
T Consensus 131 ~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 131 LWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp HHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 99999999976 6699999999999999999998775
No 81
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.55 E-value=2.8e-14 Score=157.40 Aligned_cols=164 Identities=12% Similarity=-0.025 Sum_probs=149.0
Q ss_pred hccCCCChHHHHHHHHHhcCCchhHHHHHHHHH--------hccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007648 378 LRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAV--------RTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKA 449 (594)
Q Consensus 378 l~~~p~~~~~~~~~~~~~~~~~~~a~~~y~~Ai--------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ka 449 (594)
...+|+++.+++..+ +..+++++|+..|++++ .. .|. ...+|+.+|..+...|++++|+..|+++
T Consensus 387 p~~~p~~~~a~~~~a-~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~-----~~~~~~~~a~~~~~~g~~~~A~~~~~~a 459 (681)
T 2pzi_A 387 PLVDPTDVAASVLQA-TVLSQPVQTLDSLRAARHGALDADGVD-FSE-----SVELPLMEVRALLDLGDVAKATRKLDDL 459 (681)
T ss_dssp BCCCTTSTTHHHHHH-TTTCCHHHHHHHHHHHHTC-------C-CTT-----CSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ccCCCCCcchHHhhc-ccccCHHHHHHHHHHhhhhcccccccc-ccc-----chhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 467899998888766 44589999999999999 53 342 5789999999999999999999999999
Q ss_pred HhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhC
Q 007648 450 VQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLG 529 (594)
Q Consensus 450 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 529 (594)
++.+|+++ .+|+.+|..+...|++++|+..|++|++.+|+ ++..|..++.++.+.|
T Consensus 460 l~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--------------------~~~~~~~lg~~~~~~g 515 (681)
T 2pzi_A 460 AERVGWRW----RLVWYRAVAELLTGDYDSATKHFTEVLDTFPG--------------------ELAPKLALAATAELAG 515 (681)
T ss_dssp HHHHCCCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--------------------CSHHHHHHHHHHHHHT
T ss_pred hccCcchH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------ChHHHHHHHHHHHHcC
Confidence 99999999 99999999999999999999999999999995 5688999999999999
Q ss_pred ChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhhhccc
Q 007648 530 NLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFLLHVP 573 (594)
Q Consensus 530 ~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~~~~~ 573 (594)
++++ +..|++|++++|+++.+|.++|.++.+.|++++|+.++.
T Consensus 516 ~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 516 NTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp CCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999 999999999999999999999999999999999985554
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.54 E-value=3.9e-13 Score=132.33 Aligned_cols=149 Identities=12% Similarity=0.085 Sum_probs=110.4
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhh---HHHHHHHHHHHHHh
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDH---LASIWCEWAEMELR 473 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~---~~~~~~~~~~~~~~ 473 (594)
|++++|+..|++|+...+..........++..+|.++...|++++|+..|+++++..|+++.. ....|+.+|.++..
T Consensus 132 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~ 211 (292)
T 1qqe_A 132 HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA 211 (292)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH
Confidence 788999999999998643211101125678999999999999999999999999999987632 22367888999999
Q ss_pred cCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHH--HhCChHHHHHHHHHHHhccCCchHH
Q 007648 474 HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEE--SLGNLESTRAVYERILDLRIATPQI 551 (594)
Q Consensus 474 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~A~~~~~~al~~~P~~~~~ 551 (594)
.|++++|+..|+++++++|+.. .. ....++..++..+. ..+++++|+..|++++.++|..+.+
T Consensus 212 ~g~~~~A~~~~~~al~l~p~~~-------~~--------~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 212 ATDAVAAARTLQEGQSEDPNFA-------DS--------RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp TTCHHHHHHHHHGGGCC------------------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCCCCC-------Cc--------HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHH
Confidence 9999999999999999999521 00 01123444444443 3578999999999999999999888
Q ss_pred HHHHHHHHH
Q 007648 552 IINYALLLE 560 (594)
Q Consensus 552 ~~~~~~~~~ 560 (594)
+...-..+.
T Consensus 277 ~~~~k~~~~ 285 (292)
T 1qqe_A 277 LNKIKESIQ 285 (292)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 887766653
No 83
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.54 E-value=7e-14 Score=138.05 Aligned_cols=264 Identities=13% Similarity=0.106 Sum_probs=167.8
Q ss_pred hcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-----CC-CHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCC
Q 007648 97 TMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALP-----VT-QHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDP 170 (594)
Q Consensus 97 ~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p-----~~-~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p 170 (594)
.+|..+.+|..++.++...|+++.|...|+++++... .. ....+|..++..+...|++ ++|...|++++...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~- 99 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKY-KDAANLLNDALAIR- 99 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHH-
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHH-
Confidence 3577788999999999999999999999999998521 00 1134555555555556666 66666555544321
Q ss_pred CCHHHHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHH
Q 007648 171 SHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGR 250 (594)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 250 (594)
++.. . ++ .| ....
T Consensus 100 -----------------------~~~~------------------------~--~~-----------------~~-~~~~ 112 (311)
T 3nf1_A 100 -----------------------EKTL------------------------G--KD-----------------HP-AVAA 112 (311)
T ss_dssp -----------------------HHHH------------------------C--TT-----------------CH-HHHH
T ss_pred -----------------------HHHh------------------------C--CC-----------------Ch-HHHH
Confidence 0000 0 00 00 1146
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHh
Q 007648 251 LWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRL 330 (594)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (594)
++..+|.++...|++++|...|++++....... +
T Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~------------------------~---------------------- 146 (311)
T 3nf1_A 113 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL------------------------G---------------------- 146 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH------------------------C----------------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhc------------------------C----------------------
Confidence 789999999999999999999999886531100 0
Q ss_pred hhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHh--cCCchhHHHHHHH
Q 007648 331 DVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTE 408 (594)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~y~~ 408 (594)
...|....++..++.++ .|++++|+..|++
T Consensus 147 ------------------------------------------------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 147 ------------------------------------------------KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp ------------------------------------------------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ------------------------------------------------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 00111122333444444 3788899999999
Q ss_pred HHhccCCC--cccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC---------CChhhHHHHHHHHHHHH------
Q 007648 409 AVRTVDPM--KAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNY---------KTVDHLASIWCEWAEME------ 471 (594)
Q Consensus 409 Ai~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p---------~~~~~~~~~~~~~~~~~------ 471 (594)
++...... ........++..+|.++...|++++|...|+++++..| ... .+|.......
T Consensus 179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 254 (311)
T 3nf1_A 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK----PIWMHAEEREECKGKQ 254 (311)
T ss_dssp HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C----CHHHHHHHHHHC----
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH----HHHHHHHHHHHhcCch
Confidence 98752100 00011467899999999999999999999999997533 232 3344433332
Q ss_pred HhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCC
Q 007648 472 LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA 547 (594)
Q Consensus 472 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 547 (594)
...+.+.+|...+++++...|. .+.+|..++.++.+.|++++|...|++++++.|.
T Consensus 255 ~~~~~~~~a~~~~~~~~~~~~~--------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 255 KDGTSFGEYGGWYKACKVDSPT--------------------VTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCSCCCC---------CHH--------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHhhcCCCCch--------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 3345667777788888877774 4578899999999999999999999999998875
No 84
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.53 E-value=6.2e-15 Score=129.71 Aligned_cols=117 Identities=12% Similarity=0.056 Sum_probs=106.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhh
Q 007648 429 FAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQ 508 (594)
Q Consensus 429 ~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 508 (594)
+|.++...|++++|+..+++++..+|+++ ..++.+|.++.+.|++++|++.|+++++.+|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~----~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~--------------- 63 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKS----IKGFYFAKLYYEAKEYDLAKKYICTYINVQER--------------- 63 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHH----TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------
Confidence 57777788999999999999999999998 88899999999999999999999999999995
Q ss_pred HHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhh
Q 007648 509 MKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFL 569 (594)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~ 569 (594)
++.+|..++.++...|++++|+..|+++++++|+++.+|.++|.++.+.|++++|.
T Consensus 64 -----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa 119 (150)
T 4ga2_A 64 -----DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRA 119 (150)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHH
T ss_pred -----CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Confidence 67999999999999999999999999999999999999999999999999776654
No 85
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.52 E-value=2.4e-13 Score=128.30 Aligned_cols=178 Identities=8% Similarity=0.005 Sum_probs=138.1
Q ss_pred hHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHH
Q 007648 385 VEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLAS 462 (594)
Q Consensus 385 ~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~ 462 (594)
+..++.+|..+ .|++++|+..|++++... |... ....+++.+|.++...|++++|+..|+++++..|+++.. ..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~-~~ 79 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY-PFGP--YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DY 79 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTST--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH-HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH-HH
Confidence 45566666555 489999999999999864 4221 135799999999999999999999999999999999732 13
Q ss_pred HHHHHHHHHHh------------------cCChHHHHHHHHHHhcCCchhH-----hhhhh-ccCChhhhHHhhccHhhH
Q 007648 463 IWCEWAEMELR------------------HKNFKGALELMRRATAEPSVEV-----RRRVA-ADGNEPVQMKLHKSLRLW 518 (594)
Q Consensus 463 ~~~~~~~~~~~------------------~~~~~~A~~~~~~al~~~p~~~-----~~~~~-~~~~~~~~~~~~~~~~~~ 518 (594)
+++.+|.++.. .|++++|+..|+++++..|++. ..++. ..+ .-....
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~---------~~~~~~ 150 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD---------RLAKYE 150 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH---------HHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH---------HHHHHH
Confidence 56666666543 5789999999999999999632 11110 000 011234
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhccCCch---HHHHHHHHHHHHhchhhhhhhcccCc
Q 007648 519 TFYVDLEESLGNLESTRAVYERILDLRIATP---QIIINYALLLEVWTLLHVFLLHVPFT 575 (594)
Q Consensus 519 ~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~~~~~~~~~g~~~~a~~~~~~~ 575 (594)
...+.++.+.|++++|+..|+++++..|+++ .++..++.++.+.|++++|+..+.++
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 5678889999999999999999999999987 68999999999999999998766544
No 86
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.51 E-value=2.2e-13 Score=134.40 Aligned_cols=163 Identities=10% Similarity=0.046 Sum_probs=130.4
Q ss_pred HHHHHHHh--cCCchhHHHHHHHHHhccC----CCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-----CCC
Q 007648 388 WHRRVKIF--EGNPTKQILTYTEAVRTVD----PMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVN-----YKT 456 (594)
Q Consensus 388 ~~~~~~~~--~~~~~~a~~~y~~Ai~~~~----~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~-----p~~ 456 (594)
+..++.++ .|++++|...|++++.... ++. .....++..+|.++...|++++|+..|+++++.. +++
T Consensus 72 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 149 (311)
T 3nf1_A 72 LNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH--PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH 149 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence 33344443 3788889999999887520 110 1156889999999999999999999999999874 333
Q ss_pred hhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcC--------CchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHh
Q 007648 457 VDHLASIWCEWAEMELRHKNFKGALELMRRATAE--------PSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESL 528 (594)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (594)
+ ....++..+|.++...|++++|+..|+++++. .|. ....+..++.++...
T Consensus 150 ~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~--------------------~~~~~~~la~~~~~~ 208 (311)
T 3nf1_A 150 P-DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN--------------------VAKTKNNLASCYLKQ 208 (311)
T ss_dssp H-HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHH--------------------HHHHHHHHHHHHHHH
T ss_pred h-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH--------------------HHHHHHHHHHHHHHc
Confidence 3 22378899999999999999999999999987 332 357788999999999
Q ss_pred CChHHHHHHHHHHHhc-------------------------------------------------cCCchHHHHHHHHHH
Q 007648 529 GNLESTRAVYERILDL-------------------------------------------------RIATPQIIINYALLL 559 (594)
Q Consensus 529 g~~~~A~~~~~~al~~-------------------------------------------------~P~~~~~~~~~~~~~ 559 (594)
|++++|...++++++. .|..+.++.++|.++
T Consensus 209 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~ 288 (311)
T 3nf1_A 209 GKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALY 288 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Confidence 9999999999999984 467778999999999
Q ss_pred HHhchhhhhhhccc
Q 007648 560 EVWTLLHVFLLHVP 573 (594)
Q Consensus 560 ~~~g~~~~a~~~~~ 573 (594)
...|++++|+..+.
T Consensus 289 ~~~g~~~~A~~~~~ 302 (311)
T 3nf1_A 289 RRQGKFEAAETLEE 302 (311)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHH
Confidence 99999999986653
No 87
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.51 E-value=1.6e-13 Score=134.81 Aligned_cols=163 Identities=12% Similarity=-0.002 Sum_probs=144.5
Q ss_pred CCCChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChh
Q 007648 381 NPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVD 458 (594)
Q Consensus 381 ~p~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~ 458 (594)
.|.+.+.++.++..+ .|++++|...|++++.. .|+ ...+++.+|.++...|++++|+..+++++..+|+..
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~P~-----~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~- 185 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQL-SNQ-----NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR- 185 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTS-----CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH-
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCc-----chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH-
Confidence 388889999888876 48999999999999996 453 578999999999999999999999999999999654
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHH
Q 007648 459 HLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVY 538 (594)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 538 (594)
..+...+..+.+.++.++|...|+++++..|+ ++.++..++.++...|++++|+..|
T Consensus 186 ---~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~--------------------~~~~~~~la~~l~~~g~~~~A~~~l 242 (287)
T 3qou_A 186 ---YQGLVAQIELLXQAADTPEIQQLQQQVAENPE--------------------DAALATQLALQLHQVGRNEEALELL 242 (287)
T ss_dssp ---HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT--------------------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---HHHHHHHHHHHhhcccCccHHHHHHHHhcCCc--------------------cHHHHHHHHHHHHHcccHHHHHHHH
Confidence 44555555566778899999999999999995 6789999999999999999999999
Q ss_pred HHHHhccCCc--hHHHHHHHHHHHHhchhhhhhhccc
Q 007648 539 ERILDLRIAT--PQIIINYALLLEVWTLLHVFLLHVP 573 (594)
Q Consensus 539 ~~al~~~P~~--~~~~~~~~~~~~~~g~~~~a~~~~~ 573 (594)
+++++.+|++ +.++.+++.++...|+.++|...|.
T Consensus 243 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r 279 (287)
T 3qou_A 243 FGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYR 279 (287)
T ss_dssp HHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHH
Confidence 9999999998 8999999999999999999987664
No 88
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.49 E-value=4e-13 Score=125.12 Aligned_cols=162 Identities=10% Similarity=0.012 Sum_probs=128.7
Q ss_pred hhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHH----------------HHHHhc--CCchhHHHHHHHHHhccC
Q 007648 353 KDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHR----------------RVKIFE--GNPTKQILTYTEAVRTVD 414 (594)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~----------------~~~~~~--~~~~~a~~~y~~Ai~~~~ 414 (594)
++...++..|++ ++..+|+++.+|+. +|.++. |++++|+..|++++.. .
T Consensus 18 g~~~~A~~~~~~------------al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~ 84 (208)
T 3urz_A 18 GQNGQAVSYFRQ------------TIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK-A 84 (208)
T ss_dssp TCHHHHHHHHHH------------HHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C
T ss_pred CCHHHHHHHHHH------------HHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-C
Confidence 356667777887 57889999999988 888774 8999999999999996 4
Q ss_pred CCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcC--ChHHHHHHHHHHhcCCc
Q 007648 415 PMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK--NFKGALELMRRATAEPS 492 (594)
Q Consensus 415 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p 492 (594)
|+ .+.+|..+|.++...|++++|+..|+++++.+|+++ .+|+.+|.++...| ..+.+...+++++...|
T Consensus 85 p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (208)
T 3urz_A 85 PN-----NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL----AANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK 155 (208)
T ss_dssp TT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH
T ss_pred CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc
Confidence 53 679999999999999999999999999999999999 88999998875544 45667788888876555
Q ss_pred hhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHH
Q 007648 493 VEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALL 558 (594)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~ 558 (594)
. ...|...+......|++++|+..|++|++++|++ .+...+.++
T Consensus 156 ~---------------------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i 199 (208)
T 3urz_A 156 M---------------------QYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKI 199 (208)
T ss_dssp H---------------------HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred h---------------------hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 2 2345556777777899999999999999999975 344444444
No 89
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.49 E-value=1.5e-11 Score=120.44 Aligned_cols=219 Identities=13% Similarity=0.067 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHHhc--cHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchh
Q 007648 249 GRLWTSLADYYIRRE--LFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDE 326 (594)
Q Consensus 249 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 326 (594)
..+|...+.++...| +++++.+.++.+|..+|.+. .+|......-..... .++.
T Consensus 67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y---~aW~~R~~iL~~~~~----~l~~----------------- 122 (306)
T 3dra_A 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY---QIWNYRQLIIGQIME----LNNN----------------- 122 (306)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC---HHHHHHHHHHHHHHH----HTTT-----------------
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH---HHHHHHHHHHHHHHH----hccc-----------------
Confidence 457888888888888 99999999999999999887 455443332211100 0100
Q ss_pred hhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CCch--hH
Q 007648 327 DIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPT--KQ 402 (594)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~--~a 402 (594)
..+...++..+++ ++..+|.|..+|..++.++. +.++ ++
T Consensus 123 -------------------------~~~~~~EL~~~~~------------~l~~~pkny~aW~~R~~vl~~l~~~~~~~E 165 (306)
T 3dra_A 123 -------------------------DFDPYREFDILEA------------MLSSDPKNHHVWSYRKWLVDTFDLHNDAKE 165 (306)
T ss_dssp -------------------------CCCTHHHHHHHHH------------HHHHCTTCHHHHHHHHHHHHHTTCTTCHHH
T ss_pred -------------------------cCCHHHHHHHHHH------------HHHhCCCCHHHHHHHHHHHHHhcccChHHH
Confidence 0112234455666 58899999999999888774 6777 99
Q ss_pred HHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCC------HHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCC
Q 007648 403 ILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKD------IANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (594)
Q Consensus 403 ~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~------~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~ 476 (594)
+..+++++.. +|. +..+|...+.+....|. ++++.+.+++++..+|.+. ++|...+.++.+.|.
T Consensus 166 L~~~~~~i~~-d~~-----N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~----SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 166 LSFVDKVIDT-DLK-----NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNP----STWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHHH-CTT-----CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCH----HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHh-CCC-----CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCc----cHHHHHHHHHHhcCC
Confidence 9999999986 453 56899999888887776 9999999999999999999 999999888877776
Q ss_pred -hHHHHHHHHHHhcCC---chhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHh-ccCCchHH
Q 007648 477 -FKGALELMRRATAEP---SVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD-LRIATPQI 551 (594)
Q Consensus 477 -~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~P~~~~~ 551 (594)
.+++....++++... | .++..+..+++++.+.|+.++|.++|+++.+ .+|.....
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~--------------------~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~y 295 (306)
T 3dra_A 236 SITQLEEFSLQFVDLEKDQV--------------------TSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNF 295 (306)
T ss_dssp CGGGGHHHHHTTEEGGGTEE--------------------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHH
T ss_pred ChHHHHHHHHHHHhccCCCC--------------------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHH
Confidence 445666777777765 3 3678899999999999999999999999997 79999999
Q ss_pred HHHHHHH
Q 007648 552 IINYALL 558 (594)
Q Consensus 552 ~~~~~~~ 558 (594)
|...+..
T Consensus 296 W~~~~~~ 302 (306)
T 3dra_A 296 WDYQISK 302 (306)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 9876654
No 90
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.48 E-value=4.5e-12 Score=124.23 Aligned_cols=170 Identities=15% Similarity=0.234 Sum_probs=148.7
Q ss_pred hhccCCCChHHHHHHHHHh----c-----CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHH--HHHHH
Q 007648 377 LLRQNPHNVEQWHRRVKIF----E-----GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIA--NARVI 445 (594)
Q Consensus 377 ~l~~~p~~~~~~~~~~~~~----~-----~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~A~~~ 445 (594)
++..+|.+..+|+.++.++ . +++++++..+++++.. +|. +..+|..-+-+....|.++ ++.+.
T Consensus 95 ~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~-~pk-----ny~aW~~R~~vl~~l~~~~~~~EL~~ 168 (306)
T 3dra_A 95 IALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS-DPK-----NHHVWSYRKWLVDTFDLHNDAKELSF 168 (306)
T ss_dssp HHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH-CTT-----CHHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh-CCC-----CHHHHHHHHHHHHHhcccChHHHHHH
Confidence 5889999999999887777 3 5788999999999986 453 6789999999999999988 99999
Q ss_pred HHHHHhccCCChhhHHHHHHHHHHHHHhcCC------hHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHH
Q 007648 446 FDKAVQVNYKTVDHLASIWCEWAEMELRHKN------FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWT 519 (594)
Q Consensus 446 ~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (594)
++++++.+|.|. .+|...+.+..+.+. ++++.+.+++++..+|+ +...|.
T Consensus 169 ~~~~i~~d~~N~----sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~--------------------n~SaW~ 224 (306)
T 3dra_A 169 VDKVIDTDLKNN----SAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ--------------------NPSTWN 224 (306)
T ss_dssp HHHHHHHCTTCH----HHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS--------------------CHHHHH
T ss_pred HHHHHHhCCCCH----HHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC--------------------CccHHH
Confidence 999999999999 999999988877776 89999999999999995 679999
Q ss_pred HHHHHHHHhCChHH-HHHHHHHHHhcc---CCchHHHHHHHHHHHHhchhhhhhhcccCcc
Q 007648 520 FYVDLEESLGNLES-TRAVYERILDLR---IATPQIIINYALLLEVWTLLHVFLLHVPFTF 576 (594)
Q Consensus 520 ~~~~~~~~~g~~~~-A~~~~~~al~~~---P~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~ 576 (594)
...-++.+.|+..+ +..+.++++.++ |.++.++..++.++.+.|+.++|++.+..+.
T Consensus 225 y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 225 YLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 99999999998555 667888888877 8999999999999999999999986665543
No 91
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.48 E-value=3.1e-11 Score=122.92 Aligned_cols=159 Identities=9% Similarity=-0.017 Sum_probs=97.9
Q ss_pred cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC--Ch-hhHHHHHHHHHHHHH
Q 007648 396 EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK--TV-DHLASIWCEWAEMEL 472 (594)
Q Consensus 396 ~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~--~~-~~~~~~~~~~~~~~~ 472 (594)
.|++++|...+++++...+.... ......+..+|.++...|++++|+..+++++...+. .+ .....+....+.+..
T Consensus 148 ~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (373)
T 1hz4_A 148 WARLDEAEASARSGIEVLSSYQP-QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ 226 (373)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCG-GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhhccCc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 37777788888888775432111 113456777788888888888888888888765322 22 000011112233355
Q ss_pred hcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCc----
Q 007648 473 RHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT---- 548 (594)
Q Consensus 473 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~---- 548 (594)
..|++++|+..+++++...|... ......+..++.++...|++++|...+++++...+..
T Consensus 227 ~~g~~~~A~~~~~~a~~~~~~~~----------------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~ 290 (373)
T 1hz4_A 227 MTGDKAAAANWLRHTAKPEFANN----------------HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMS 290 (373)
T ss_dssp HTTCHHHHHHHHHHSCCCCCTTC----------------GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HCCCHHHHHHHHHhCCCCCCCcc----------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchh
Confidence 67888888888888877665210 0011235666777777888888888888887764431
Q ss_pred --hHHHHHHHHHHHHhchhhhhhhc
Q 007648 549 --PQIIINYALLLEVWTLLHVFLLH 571 (594)
Q Consensus 549 --~~~~~~~~~~~~~~g~~~~a~~~ 571 (594)
..++..++.++...|++++|+..
T Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~ 315 (373)
T 1hz4_A 291 DLNRNLLLLNQLYWQAGRKSDAQRV 315 (373)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 24666777888888877777643
No 92
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.47 E-value=3.1e-14 Score=124.87 Aligned_cols=104 Identities=13% Similarity=0.038 Sum_probs=98.7
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhc
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 501 (594)
...+|+.+|..+...|++++|+..|++++..+|+++ .+|+.+|.++...|++++|+..|+++++++|+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~----~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-------- 102 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV----DYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-------- 102 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS--------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC--------
Confidence 578999999999999999999999999999999999 99999999999999999999999999999995
Q ss_pred cCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCch
Q 007648 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP 549 (594)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~ 549 (594)
++..|..++.++..+|++++|+..|++++++.|+++
T Consensus 103 ------------~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 103 ------------DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp ------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred ------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 678999999999999999999999999999999886
No 93
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.46 E-value=2.1e-11 Score=124.56 Aligned_cols=126 Identities=8% Similarity=0.014 Sum_probs=92.0
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC--ChhhHHHHHHHHHHHHHhc
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK--TVDHLASIWCEWAEMELRH 474 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~--~~~~~~~~~~~~~~~~~~~ 474 (594)
|++++|+..|++|+....... ......++..+|.++...|++++|+..++++++..+. ++... ..+..++.+....
T Consensus 236 ~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~l~~ly~~~ 313 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVSREKV-PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK-ELFLFLQAVYKET 313 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHH-HHHHHHHHHHSSS
T ss_pred CCHHHHHHHHHHHHHHHHhhC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHhCC
Confidence 788899999999987321100 0114788999999999999999999999999997544 22111 3345555566667
Q ss_pred CC---hHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q 007648 475 KN---FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR 545 (594)
Q Consensus 475 ~~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 545 (594)
++ +.+|...+++. ...|. ...++..++.++...|++++|...|+++++..
T Consensus 314 ~~~~~~~~al~~~~~~-~~~~~--------------------~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 314 VDERKIHDLLSYFEKK-NLHAY--------------------IEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp CCHHHHHHHHHHHHHT-TCHHH--------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhC-CChhH--------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 77 77788887762 22221 23567789999999999999999999999864
No 94
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.46 E-value=2.4e-13 Score=119.22 Aligned_cols=109 Identities=11% Similarity=0.024 Sum_probs=101.3
Q ss_pred hhhhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007648 375 SVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQV 452 (594)
Q Consensus 375 ~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~ 452 (594)
..++..+|+++++|+.+|..+. |++++|+..|++++.. +|. .+.+|..+|.++...|++++|+..|++|+++
T Consensus 26 ~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-~P~-----~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l 99 (151)
T 3gyz_A 26 KDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-DFY-----NVDYIMGLAAIYQIKEQFQQAADLYAVAFAL 99 (151)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC-----CHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 4578999999999999988874 8999999999999996 553 6899999999999999999999999999999
Q ss_pred cCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCch
Q 007648 453 NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSV 493 (594)
Q Consensus 453 ~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 493 (594)
+|+++ .+|+.+|.++...|++++|+..|+++++..|+
T Consensus 100 ~P~~~----~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 100 GKNDY----TPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp SSSCC----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred CCCCc----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999 99999999999999999999999999999995
No 95
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.46 E-value=4.2e-12 Score=129.77 Aligned_cols=165 Identities=10% Similarity=0.018 Sum_probs=124.1
Q ss_pred HHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----ccCCChhhHH
Q 007648 389 HRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQ-----VNYKTVDHLA 461 (594)
Q Consensus 389 ~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~-----~~p~~~~~~~ 461 (594)
..+|.++ .|++++|...|++|+...+..........++..+|.++...|++++|+..|++|+. .+|..+
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~---- 261 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP---- 261 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH----
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH----
Confidence 3344443 38889999999999975321110112457889999999999999999999999999 556555
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCC---hHHHHHHH
Q 007648 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN---LESTRAVY 538 (594)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~ 538 (594)
.++..+|.++.+.|++++|...++++++..+.. ++. .....+..++.++...|+ +++|...+
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~-------~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR--------SHK-------FYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT--------CCS-------CHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--------CCH-------HHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 889999999999999999999999999986631 000 011234555666777788 78888888
Q ss_pred HHHHhccCCchHHHHHHHHHHHHhchhhhhhhccc
Q 007648 539 ERILDLRIATPQIIINYALLLEVWTLLHVFLLHVP 573 (594)
Q Consensus 539 ~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~~~~~ 573 (594)
++ ....|....++..+|.++...|++++|+.++.
T Consensus 327 ~~-~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~ 360 (378)
T 3q15_A 327 EK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYR 360 (378)
T ss_dssp HH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred Hh-CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 87 44556777888999999999999999986654
No 96
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.45 E-value=2.2e-13 Score=119.32 Aligned_cols=125 Identities=8% Similarity=-0.052 Sum_probs=110.4
Q ss_pred HHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHH
Q 007648 404 LTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483 (594)
Q Consensus 404 ~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 483 (594)
..|++++.. +|. ....++.+|..+...|++++|+..|++++..+|.++ .+|+.+|.++...|++++|+..
T Consensus 8 ~~~~~al~~-~p~-----~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~ 77 (148)
T 2vgx_A 8 GTIAMLNEI-SSD-----TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS----RFFLGLGACRQAMGQYDLAIHS 77 (148)
T ss_dssp CSHHHHTTC-CHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHcC-CHh-----hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH----HHHHHHHHHHHHHhhHHHHHHH
Confidence 467788774 443 578899999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHH
Q 007648 484 MRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALL 558 (594)
Q Consensus 484 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~ 558 (594)
|+++++.+|+ ++..|..++.++...|++++|+..|+++++++|++|........+
T Consensus 78 ~~~al~l~p~--------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 132 (148)
T 2vgx_A 78 YSYGAVMDIX--------------------EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRV 132 (148)
T ss_dssp HHHHHHHSTT--------------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHhcCCC--------------------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHH
Confidence 9999999995 668899999999999999999999999999999988765444333
No 97
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.45 E-value=7.2e-13 Score=130.40 Aligned_cols=174 Identities=7% Similarity=-0.004 Sum_probs=124.3
Q ss_pred HHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhc-CCHHHHHHHHHHHHhccCCCh--hhH
Q 007648 386 EQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETY-KDIANARVIFDKAVQVNYKTV--DHL 460 (594)
Q Consensus 386 ~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~kal~~~p~~~--~~~ 460 (594)
.+|..+|.++. |++++|+..|++|+...+...........+..+|.++... |++++|+..|++|+++.|.+. ...
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 34455555553 7899999999999985322110011256889999999996 999999999999999887642 122
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHH
Q 007648 461 ASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540 (594)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 540 (594)
..++..+|.++.+.|++++|+..|+++++..|+.... -+.....+...+.++...|++++|+..|++
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 224 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS-------------QWSLKDYFLKKGLCQLAATDAVAAARTLQE 224 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT-------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc-------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3678899999999999999999999999999852100 000123678889999999999999999999
Q ss_pred HHhccCCchHH-----HHHHHHHHH--Hhchhhhhhhcc
Q 007648 541 ILDLRIATPQI-----IINYALLLE--VWTLLHVFLLHV 572 (594)
Q Consensus 541 al~~~P~~~~~-----~~~~~~~~~--~~g~~~~a~~~~ 572 (594)
+++++|+.+.. +..++..+. ..+++++|+..+
T Consensus 225 al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~ 263 (292)
T 1qqe_A 225 GQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF 263 (292)
T ss_dssp GGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 99999988764 344555554 346788888666
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.44 E-value=7.1e-13 Score=123.41 Aligned_cols=157 Identities=12% Similarity=0.082 Sum_probs=126.0
Q ss_pred ChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHH----------------HHHHHHhcCCHHHHHHH
Q 007648 384 NVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVA----------------FAKLYETYKDIANARVI 445 (594)
Q Consensus 384 ~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~----------------~a~~~~~~~~~~~A~~~ 445 (594)
+++.++..|..+ .|++++|+..|++++.. .|+ .+.+|+. +|.++...|++++|+..
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~-----~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 76 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIAL-NID-----RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF 76 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CHH-----HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCC-----ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 344555555544 48999999999999986 443 5678888 99999999999999999
Q ss_pred HHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHH
Q 007648 446 FDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLE 525 (594)
Q Consensus 446 ~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (594)
|+++++.+|+++ .+|+.+|.++...|++++|+..|+++++.+|+ ++..|..++.++
T Consensus 77 ~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~--------------------~~~a~~~lg~~~ 132 (208)
T 3urz_A 77 YKELLQKAPNNV----DCLEACAEMQVCRGQEKDALRMYEKILQLEAD--------------------NLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------------------CHHHHHHHHHHH
T ss_pred HHHHHHHCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------------------CHHHHHHHHHHH
Confidence 999999999999 99999999999999999999999999999995 668888888888
Q ss_pred HHhCC--hHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhhhc
Q 007648 526 ESLGN--LESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFLLH 571 (594)
Q Consensus 526 ~~~g~--~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~~~ 571 (594)
...|. .+.+...|.+++...|. ..++.+.|..+...|++++|+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~ 179 (208)
T 3urz_A 133 YLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNS 179 (208)
T ss_dssp HHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHH
Confidence 66654 45677888887654332 24677788888888888888643
No 99
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.44 E-value=4.1e-13 Score=116.71 Aligned_cols=131 Identities=11% Similarity=-0.029 Sum_probs=109.5
Q ss_pred HHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHH
Q 007648 404 LTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483 (594)
Q Consensus 404 ~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 483 (594)
..|++++.. +|. ....++.+|..+...|++++|+..|++++..+|+++ .+|+.+|.++.+.|++++|...
T Consensus 5 ~~l~~al~~-~p~-----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~ 74 (142)
T 2xcb_A 5 GTLAMLRGL-SED-----TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA----RYFLGLGACRQSLGLYEQALQS 74 (142)
T ss_dssp ----CCTTC-CHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHcC-CHH-----HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHHhhHHHHHHH
Confidence 356666653 342 567889999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhc
Q 007648 484 MRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWT 563 (594)
Q Consensus 484 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g 563 (594)
|++++..+|+ ++..|..++.++...|++++|+..|+++++++|++|..+.....+....+
T Consensus 75 ~~~al~~~p~--------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 134 (142)
T 2xcb_A 75 YSYGALMDIN--------------------EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE 134 (142)
T ss_dssp HHHHHHHCTT--------------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred HHHHHhcCCC--------------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 9999999995 66888999999999999999999999999999999887665555544443
Q ss_pred h
Q 007648 564 L 564 (594)
Q Consensus 564 ~ 564 (594)
.
T Consensus 135 ~ 135 (142)
T 2xcb_A 135 A 135 (142)
T ss_dssp H
T ss_pred H
Confidence 3
No 100
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.43 E-value=9.4e-13 Score=142.44 Aligned_cols=151 Identities=12% Similarity=0.065 Sum_probs=122.6
Q ss_pred hhhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 007648 376 VLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVN 453 (594)
Q Consensus 376 ~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~ 453 (594)
.++..+|++..+|..++..+. |++++|...|++|+.. .|. ...+|..+|.++...|++++|+..|+++++.+
T Consensus 14 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 87 (568)
T 2vsy_A 14 AAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL-HPG-----HPEAVARLGRVRWTQQRHAEAAVLLQQASDAA 87 (568)
T ss_dssp -------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-STT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 467788888888888888774 8899999999998885 342 57888888988888899999999999999988
Q ss_pred CCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHh---CC
Q 007648 454 YKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESL---GN 530 (594)
Q Consensus 454 p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~ 530 (594)
|+++ .+|+.+|.++.+.|++++|++.|+++++..|+ ++..+..++.++... |+
T Consensus 88 p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------------------~~~~~~~l~~~~~~~~~~g~ 143 (568)
T 2vsy_A 88 PEHP----GIALWLGHALEDAGQAEAAAAAYTRAHQLLPE--------------------EPYITAQLLNWRRRLCDWRA 143 (568)
T ss_dssp TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------CHHHHHHHHHHHHHTTCCTT
T ss_pred CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------CHHHHHHHHHHHHHhhcccc
Confidence 8888 88888888888889999999999999988884 567888888888888 88
Q ss_pred hHHHHHHHHHHHhccCCchHHHHHHH
Q 007648 531 LESTRAVYERILDLRIATPQIIINYA 556 (594)
Q Consensus 531 ~~~A~~~~~~al~~~P~~~~~~~~~~ 556 (594)
+++|.+.|+++++.+|.+...+..++
T Consensus 144 ~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 144 LDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHHHHHHhcCCcccChHHHhC
Confidence 99999999999999888888777666
No 101
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.43 E-value=3.8e-13 Score=112.09 Aligned_cols=110 Identities=25% Similarity=0.313 Sum_probs=95.6
Q ss_pred ccCCCChHHHHHHHHHhc--CCc------hhHHHHHHHHHhccCCCcc--cCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007648 379 RQNPHNVEQWHRRVKIFE--GNP------TKQILTYTEAVRTVDPMKA--VGKPHTLWVAFAKLYETYKDIANARVIFDK 448 (594)
Q Consensus 379 ~~~p~~~~~~~~~~~~~~--~~~------~~a~~~y~~Ai~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~k 448 (594)
-..|+|++.|+.++.+++ |++ ++.+.+|++|+..+||.+. +..|..+|+.||.+. ..+|.++||++|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~-ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK-AIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH-HHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-HhcCHHHHHHHHHH
Confidence 458999999999999987 888 9999999999999999752 245899999999885 55999999999999
Q ss_pred HHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCch
Q 007648 449 AVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSV 493 (594)
Q Consensus 449 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 493 (594)
|++.+..-+ .+|+.+++||.++|+++.||+++.+|+..+|.
T Consensus 86 a~~~hKkFA----Kiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 86 ARANCKKFA----FVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHHCTTBH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHhHHHH----HHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 999744444 99999999999999999999999999999994
No 102
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.43 E-value=2e-11 Score=124.27 Aligned_cols=132 Identities=14% Similarity=0.110 Sum_probs=84.9
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWV-----AFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEME 471 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~-----~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~ 471 (594)
|++++|...+++++...+... ....|. ..+.++...|++++|+..+++++...|.++......+..++.++
T Consensus 188 g~~~~A~~~l~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 188 GDLDNARSQLNRLENLLGNGK----YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp TCHHHHHHHHHHHHHHHTTSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccC----cchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 677778888888776422211 111222 23344567888888888888888766654322223566777777
Q ss_pred HhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccC
Q 007648 472 LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRI 546 (594)
Q Consensus 472 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P 546 (594)
...|++++|...+++++...+.. +.. .....++...+.++...|++++|+..+++++.+.+
T Consensus 264 ~~~g~~~~A~~~l~~a~~~~~~~--------~~~------~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNENARSL--------RLM------SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT--------TCH------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhC--------cch------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 78888888888888887765420 000 00124566777788888888888888888888655
No 103
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.43 E-value=2e-12 Score=114.87 Aligned_cols=131 Identities=15% Similarity=0.094 Sum_probs=116.7
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhc
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 501 (594)
.+..|..+|..+...|+++.|+..|+++++..|+++ .+|..+|.++...|++++|+..++++++..|+
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-------- 79 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA----IYYGNRSLAYLRTECYGYALGDATRAIELDKK-------- 79 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--------
Confidence 357788999999999999999999999999999998 89999999999999999999999999999995
Q ss_pred cCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHH--HHHhchhhhhhhcccCcc
Q 007648 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALL--LEVWTLLHVFLLHVPFTF 576 (594)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~--~~~~g~~~~a~~~~~~~~ 576 (594)
++..|..++.++...|++++|+..|+++++.+|+++.++..++.. +...|++++|+..++...
T Consensus 80 ------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 80 ------------YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 568899999999999999999999999999999999988655544 778899999998776543
No 104
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.43 E-value=3.7e-13 Score=136.28 Aligned_cols=306 Identities=11% Similarity=0.149 Sum_probs=126.5
Q ss_pred chhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHH
Q 007648 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLR 160 (594)
Q Consensus 81 ~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~ 160 (594)
.|++++|...+++. +.+.+|..+|....+.|++++|.+.|.++ |. ...|...+......|++ ++|++
T Consensus 16 ~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika----~D---~~~y~~V~~~ae~~g~~-EeAi~ 82 (449)
T 1b89_A 16 IGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DD---PSSYMEVVQAANTSGNW-EELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC----CC---HHHHHHHHHHHHhCCCH-HHHHH
Confidence 36678888888888 33468999999999889999999888774 22 23455555555667888 88888
Q ss_pred HHHHHHhhCCCCH-H-HHHHHHHhcccHHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHH
Q 007648 161 VYRRYLKYDPSHI-E-DFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIR 238 (594)
Q Consensus 161 ~~~~~l~~~p~~~-~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 238 (594)
.++.+++..|+.. . .++..|.+.|++.++.+.++. |
T Consensus 83 yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~----p-------------------------------------- 120 (449)
T 1b89_A 83 YLQMARKKARESYVETELIFALAKTNRLAELEEFING----P-------------------------------------- 120 (449)
T ss_dssp --------------------------CHHHHTTTTTC----C--------------------------------------
T ss_pred HHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC----C--------------------------------------
Confidence 8888777544321 1 455677788888776654321 0
Q ss_pred HHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCccccccc
Q 007648 239 GGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDE 318 (594)
Q Consensus 239 ~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~ 318 (594)
+ ...|...|+.+...|++++|+..|.++ ..+..+-..+..
T Consensus 121 -------n--~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------~n~~~LA~~L~~------------------------ 160 (449)
T 1b89_A 121 -------N--NAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVH------------------------ 160 (449)
T ss_dssp -------------------------CTTTHHHHHHHT-------TCHHHHHHHHHT------------------------
T ss_pred -------c--HHHHHHHHHHHHHcCCHHHHHHHHHHh-------hhHHHHHHHHHH------------------------
Confidence 0 124666666666666666666666654 111111111110
Q ss_pred ccCCcchhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHH--hc
Q 007648 319 EHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKI--FE 396 (594)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~--~~ 396 (594)
.+++..+...|++ + +++..|...+.. ..
T Consensus 161 ---------------------------------Lg~yq~AVea~~K------------A-----~~~~~Wk~v~~aCv~~ 190 (449)
T 1b89_A 161 ---------------------------------LGEYQAAVDGARK------------A-----NSTRTWKEVCFACVDG 190 (449)
T ss_dssp ---------------------------------TTCHHHHHHHHHH------------H-----TCHHHHHHHHHHHHHT
T ss_pred ---------------------------------hccHHHHHHHHHH------------c-----CCchhHHHHHHHHHHc
Confidence 1112223333333 1 355566553332 23
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHH--hc
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMEL--RH 474 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~--~~ 474 (594)
|+++.|..+... +. . .++-...++.+|.+.|.+++|+..+++++..+|.+. .+|..++..+. +-
T Consensus 191 ~ef~lA~~~~l~-L~-~--------~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~----~~ftel~il~~ky~p 256 (449)
T 1b89_A 191 KEFRLAQMCGLH-IV-V--------HADELEELINYYQDRGYFEELITMLEAALGLERAHM----GMFTELAILYSKFKP 256 (449)
T ss_dssp TCHHHHHHTTTT-TT-T--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCH----HHHHHHHHHHHTTCH
T ss_pred CcHHHHHHHHHH-HH-h--------CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHH----HHHHHHHHHHHhcCH
Confidence 666666444433 22 1 223334577788999999999999999999998888 77777777664 35
Q ss_pred CChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhc----------
Q 007648 475 KNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL---------- 544 (594)
Q Consensus 475 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---------- 544 (594)
+++.+..+.|...+.++|- .+.-....+|..+.-++...|+++.|....-....-
T Consensus 257 ~k~~ehl~~~~~~ini~k~---------------~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~ 321 (449)
T 1b89_A 257 QKMREHLELFWSRVNIPKV---------------LRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDI 321 (449)
T ss_dssp HHHHHHHHHHSTTSCHHHH---------------HHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHH---------------HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHH
Confidence 6777788888877777661 111125689999999999999999999877776655
Q ss_pred --cCCchHHHHHHHHHHH
Q 007648 545 --RIATPQIIINYALLLE 560 (594)
Q Consensus 545 --~P~~~~~~~~~~~~~~ 560 (594)
+|.+.+++++-+.||.
T Consensus 322 ~~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 322 ITKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHHCSSTHHHHHHHHHHH
T ss_pred HhchhHHHHHHHHHHHHH
Confidence 7889999999999987
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.42 E-value=1.6e-12 Score=140.65 Aligned_cols=145 Identities=15% Similarity=0.190 Sum_probs=119.9
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCC
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~ 476 (594)
|++++|...|++++.. .|. ...+|..+|.++...|++++|+..|+++++.+|+++ .+|..+|.++...|+
T Consensus 3 g~~~~A~~~~~~al~~-~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~ 72 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRH-RPQ-----DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP----EAVARLGRVRWTQQR 72 (568)
T ss_dssp -------------------C-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH----HHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHh-CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCC
Confidence 5778899999999986 443 578999999999999999999999999999999999 999999999999999
Q ss_pred hHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHH
Q 007648 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556 (594)
Q Consensus 477 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~ 556 (594)
+++|.+.|+++++.+|+ ++..|..++.++...|++++|++.|+++++.+|+++.++.+++
T Consensus 73 ~~~A~~~~~~al~~~p~--------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 132 (568)
T 2vsy_A 73 HAEAAVLLQQASDAAPE--------------------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLL 132 (568)
T ss_dssp HHHHHHHHHHHHHHCTT--------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC--------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999995 6788999999999999999999999999999999999999999
Q ss_pred HHHHHh---chhhhhhhc
Q 007648 557 LLLEVW---TLLHVFLLH 571 (594)
Q Consensus 557 ~~~~~~---g~~~~a~~~ 571 (594)
.++... |++++|+..
T Consensus 133 ~~~~~~~~~g~~~~A~~~ 150 (568)
T 2vsy_A 133 NWRRRLCDWRALDVLSAQ 150 (568)
T ss_dssp HHHHHTTCCTTHHHHHHH
T ss_pred HHHHHhhccccHHHHHHH
Confidence 999999 988888643
No 106
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.42 E-value=1.7e-12 Score=125.91 Aligned_cols=170 Identities=11% Similarity=0.044 Sum_probs=139.9
Q ss_pred CCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccC----CCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-
Q 007648 381 NPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVD----PMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVN- 453 (594)
Q Consensus 381 ~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~----~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~- 453 (594)
+|..+.+|..++.++. |++++|...|++++.... ++. .....++..+|.++...|++++|+..|++++...
T Consensus 39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 116 (283)
T 3edt_B 39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDH--PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 116 (283)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC--HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcc--hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3667888998888874 899999999999997520 110 1257889999999999999999999999999873
Q ss_pred ----CCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcC--------CchhHhhhhhccCChhhhHHhhccHhhHHHH
Q 007648 454 ----YKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE--------PSVEVRRRVAADGNEPVQMKLHKSLRLWTFY 521 (594)
Q Consensus 454 ----p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (594)
|+++. ...++..+|.++...|++++|...|+++++. .|. ....+..+
T Consensus 117 ~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--------------------~~~~~~~l 175 (283)
T 3edt_B 117 KVLGKFHPD-VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN--------------------VAKTKNNL 175 (283)
T ss_dssp HHHCTTCHH-HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH--------------------HHHHHHHH
T ss_pred HHcCCCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH--------------------HHHHHHHH
Confidence 33332 1278999999999999999999999999988 442 35778899
Q ss_pred HHHHHHhCChHHHHHHHHHHHhc-------------------------------------------------cCCchHHH
Q 007648 522 VDLEESLGNLESTRAVYERILDL-------------------------------------------------RIATPQII 552 (594)
Q Consensus 522 ~~~~~~~g~~~~A~~~~~~al~~-------------------------------------------------~P~~~~~~ 552 (594)
+.++...|++++|...++++++. .|..+.++
T Consensus 176 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (283)
T 3edt_B 176 ASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTL 255 (283)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 99999999999999999999986 25556788
Q ss_pred HHHHHHHHHhchhhhhhhccc
Q 007648 553 INYALLLEVWTLLHVFLLHVP 573 (594)
Q Consensus 553 ~~~~~~~~~~g~~~~a~~~~~ 573 (594)
..+|.++...|++++|+..+.
T Consensus 256 ~~la~~~~~~g~~~~A~~~~~ 276 (283)
T 3edt_B 256 RSLGALYRRQGKLEAAHTLED 276 (283)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999986653
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.41 E-value=1.5e-12 Score=110.53 Aligned_cols=106 Identities=16% Similarity=0.175 Sum_probs=98.2
Q ss_pred hccCCCChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 007648 378 LRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK 455 (594)
Q Consensus 378 l~~~p~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~ 455 (594)
...||+.++.+..+|..+ .|++++|+..|++|++. .|. .+.+|..+|.++...|++++|+..|++|++++|+
T Consensus 6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~-~p~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 79 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR-DPE-----NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK 79 (126)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC-----CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence 457999999999999887 48999999999999996 443 6899999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCch
Q 007648 456 TVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSV 493 (594)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 493 (594)
++ .+|+.+|.++...|++++|++.|+++++++|+
T Consensus 80 ~~----~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 113 (126)
T 4gco_A 80 FI----KGYIRKAACLVAMREWSKAQRAYEDALQVDPS 113 (126)
T ss_dssp CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hh----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcC
Confidence 99 99999999999999999999999999999996
No 108
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.41 E-value=3.9e-12 Score=107.75 Aligned_cols=116 Identities=12% Similarity=0.010 Sum_probs=108.3
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhc
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 501 (594)
.+..|...|..+...|++++|+..|+++++.+|+++ .+|..+|.++.+.|++++|+..|+++++.+|+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------- 70 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA----RGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-------- 70 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--------
Confidence 357889999999999999999999999999999999 99999999999999999999999999999995
Q ss_pred cCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhcc------CCchHHHHHHHHHHHH
Q 007648 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR------IATPQIIINYALLLEV 561 (594)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------P~~~~~~~~~~~~~~~ 561 (594)
++..|..++.++...|++++|+..|+++++++ |+++.++..+..+..+
T Consensus 71 ------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 71 ------------FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred ------------cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 67889999999999999999999999999999 9999999988887654
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.41 E-value=1.4e-11 Score=115.99 Aligned_cols=197 Identities=10% Similarity=-0.050 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHH--HHHHHHHHHHHHHhcCCCCCCcccccccccCCcchh
Q 007648 249 GRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFD--SYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDE 326 (594)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~--~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 326 (594)
+..++..|..+...|++++|+..|++++...|..+.....+. +...+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~------------------------------ 53 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK------------------------------ 53 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh------------------------------
Confidence 457888999999999999999999999998887652111111 111000
Q ss_pred hhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChH---HHHHHHHHhcCCchhHH
Q 007648 327 DIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVE---QWHRRVKIFEGNPTKQI 403 (594)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~---~~~~~~~~~~~~~~~a~ 403 (594)
.++...++..|++ ++..+|++.. +++.++..+.
T Consensus 54 -------------------------~~~~~~A~~~~~~------------~l~~~P~~~~~~~a~~~~g~~~~------- 89 (225)
T 2yhc_A 54 -------------------------NADLPLAQAAIDR------------FIRLNPTHPNIDYVMYMRGLTNM------- 89 (225)
T ss_dssp -------------------------TTCHHHHHHHHHH------------HHHHCTTCTTHHHHHHHHHHHHH-------
T ss_pred -------------------------cCCHHHHHHHHHH------------HHHHCcCCCcHHHHHHHHHHHHH-------
Confidence 1123334445555 3555666543 4444443321
Q ss_pred HHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHH-------------HHHHHHHHH
Q 007648 404 LTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLA-------------SIWCEWAEM 470 (594)
Q Consensus 404 ~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~-------------~~~~~~~~~ 470 (594)
+.+.. ....+..++......|++++|+..|+++++..|+++.... ...+..|.+
T Consensus 90 ---~~~~~----------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~ 156 (225)
T 2yhc_A 90 ---ALDDS----------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEY 156 (225)
T ss_dssp ---HHHC------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhhhh----------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11100 1122333444445578999999999999999999984321 112567778
Q ss_pred HHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCch
Q 007648 471 ELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP 549 (594)
Q Consensus 471 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~ 549 (594)
+.+.|++++|+..|+++++..|++. ..+..+...+.++.++|++++|++.++++....|++.
T Consensus 157 ~~~~~~~~~A~~~~~~~l~~~p~~~-----------------~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 157 YTERGAWVAVVNRVEGMLRDYPDTQ-----------------ATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTSH-----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHcCcHHHHHHHHHHHHHHCcCCC-----------------ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 8899999999999999999999521 1236789999999999999999999999999988764
No 110
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.40 E-value=4.8e-12 Score=107.63 Aligned_cols=120 Identities=14% Similarity=0.082 Sum_probs=112.6
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhh
Q 007648 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (594)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 500 (594)
.....|..+|..+...|++++|+..|+++++..|+++ .+|+.+|.++...|++++|+..++++++..|+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------- 82 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA----KLYSNRAACYTKLLEFQLALKDCEECIQLEPT------- 82 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH----HHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-------
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-------
Confidence 3678999999999999999999999999999999998 89999999999999999999999999999994
Q ss_pred ccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhch
Q 007648 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTL 564 (594)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~ 564 (594)
++..|..++.++...|++++|+..++++++.+|.++.++..++.++...|+
T Consensus 83 -------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 83 -------------FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp -------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred -------------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 568899999999999999999999999999999999999999999987764
No 111
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.40 E-value=5.3e-12 Score=106.81 Aligned_cols=121 Identities=15% Similarity=0.089 Sum_probs=113.0
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhc
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 501 (594)
....|..+|..+...|+++.|+..|++++...|+++ .+|..++.++...|++++|...++++++..|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-------- 78 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA----VYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-------- 78 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc--------
Confidence 467889999999999999999999999999999998 89999999999999999999999999999995
Q ss_pred cCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhh
Q 007648 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLH 566 (594)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~ 566 (594)
++..|..++.++...|++++|...|+++++..|+++.++..++.++...|+++
T Consensus 79 ------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 79 ------------YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred ------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 56889999999999999999999999999999999999999999999988763
No 112
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.40 E-value=4.2e-12 Score=107.91 Aligned_cols=121 Identities=14% Similarity=0.230 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCC
Q 007648 425 LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGN 504 (594)
Q Consensus 425 ~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 504 (594)
+|..+|..+...|++++|+.+++++++..|.++ ..|..++.++...|++++|...++++++..|+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----------- 67 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA----EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR----------- 67 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch----hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-----------
Confidence 344444444444555555555555544444444 44444444444444555555555555444442
Q ss_pred hhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhh
Q 007648 505 EPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFL 569 (594)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~ 569 (594)
++..|..++.++...|++++|.+.++++++..|.++.++..++.++...|++++|+
T Consensus 68 ---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 123 (136)
T 2fo7_A 68 ---------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI 123 (136)
T ss_dssp ---------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred ---------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHH
Confidence 23344444444444455555555555555544444444444555554445444444
No 113
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.40 E-value=2.3e-12 Score=130.50 Aligned_cols=205 Identities=16% Similarity=0.161 Sum_probs=74.4
Q ss_pred HHHHHHHHHHH-HcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHH
Q 007648 27 LKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIW 105 (594)
Q Consensus 27 ~~~w~~~~~~~-~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw 105 (594)
...|..+++.. ..|+++.|+..|.++ .++..|...+.. +...|++++|+..++.+++..|+ +.+.
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~--------ae~~g~~EeAi~yl~~ark~~~~-~~i~ 97 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQA--------ANTSGNWEELVKYLQMARKKARE-SYVE 97 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHH--------HHhCCCHHHHHHHHHHHHHhCcc-chhH
Confidence 36999999865 478899999999774 234455544332 24568899999999999886544 7888
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHHHHHHHHhccc
Q 007648 106 IMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKL 185 (594)
Q Consensus 106 ~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~ 185 (594)
..++.++.+.|++.++.++++ .|+ ...|...+..+...|.+ ++|+..|.++ ++-..++.++.+.|+
T Consensus 98 ~~Li~~Y~Klg~l~e~e~f~~-----~pn---~~a~~~IGd~~~~~g~y-eeA~~~Y~~a-----~n~~~LA~~L~~Lg~ 163 (449)
T 1b89_A 98 TELIFALAKTNRLAELEEFIN-----GPN---NAHIQQVGDRCYDEKMY-DAAKLLYNNV-----SNFGRLASTLVHLGE 163 (449)
T ss_dssp -----------CHHHHTTTTT-----CC-------------------CT-TTHHHHHHHT-----TCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHc-----CCc---HHHHHHHHHHHHHcCCH-HHHHHHHHHh-----hhHHHHHHHHHHhcc
Confidence 889999999999999887775 354 35788888888888999 9999999876 455567788999999
Q ss_pred HHHHHHHHHHhhcCcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHH--HHhhccchhHHHHHHHHHHHHHhc
Q 007648 186 WQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRG--GIRKFTDEVGRLWTSLADYYIRRE 263 (594)
Q Consensus 186 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~~~~~~~~la~~~~~~g 263 (594)
+++|.+.++++. ....|.....-+...++ ++....- .+..+|++ ...++.+|.+.|
T Consensus 164 yq~AVea~~KA~------------~~~~Wk~v~~aCv~~~e------f~lA~~~~l~L~~~ad~----l~~lv~~Yek~G 221 (449)
T 1b89_A 164 YQAAVDGARKAN------------STRTWKEVCFACVDGKE------FRLAQMCGLHIVVHADE----LEELINYYQDRG 221 (449)
T ss_dssp HHHHHHHHHHHT------------CHHHHHHHHHHHHHTTC------HHHHHHTTTTTTTCHHH----HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC------------CchhHHHHHHHHHHcCc------HHHHHHHHHHHHhCHhh----HHHHHHHHHHCC
Confidence 999999998873 23567665544444332 1111111 12234443 224667777777
Q ss_pred cHHHHHHHHHHHHhhhcc
Q 007648 264 LFEKARDIFEEGMMTVVT 281 (594)
Q Consensus 264 ~~~~A~~~~~~al~~~p~ 281 (594)
++++|...++.+|...+.
T Consensus 222 ~~eEai~lLe~aL~le~a 239 (449)
T 1b89_A 222 YFEELITMLEAALGLERA 239 (449)
T ss_dssp CHHHHHHHHHHHTTSTTC
T ss_pred CHHHHHHHHHHHhCCcHH
Confidence 777777777777766543
No 114
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.38 E-value=1.3e-11 Score=104.87 Aligned_cols=133 Identities=17% Similarity=0.340 Sum_probs=118.0
Q ss_pred HHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHH
Q 007648 386 EQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASI 463 (594)
Q Consensus 386 ~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~ 463 (594)
++|+.++..+ .|++++|...|++++... |. ....|..+|.++...|++++|+..+++++...|.++ .+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~ 71 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PR-----SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA----EA 71 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-Cc-----chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch----HH
Confidence 3566666665 389999999999999863 32 578899999999999999999999999999999998 88
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHh
Q 007648 464 WCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543 (594)
Q Consensus 464 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 543 (594)
|..++.++...|++++|...++++++..|+ ++..|..++.++...|++++|...+++++.
T Consensus 72 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 72 WYNLGNAYYKQGDYDEAIEYYQKALELDPR--------------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--------------------ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 999999999999999999999999999884 567888999999999999999999999999
Q ss_pred ccCCc
Q 007648 544 LRIAT 548 (594)
Q Consensus 544 ~~P~~ 548 (594)
.+|++
T Consensus 132 ~~~~~ 136 (136)
T 2fo7_A 132 LDPRS 136 (136)
T ss_dssp HSTTC
T ss_pred cCCCC
Confidence 98864
No 115
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.37 E-value=7.1e-13 Score=133.16 Aligned_cols=147 Identities=13% Similarity=0.019 Sum_probs=118.8
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh-----------hhHHHHHH
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTV-----------DHLASIWC 465 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~-----------~~~~~~~~ 465 (594)
+++++|+..|++++.. .|. .+.+|..+|..+...|++++|+..|++|++..|+++ .....+|+
T Consensus 127 ~~~~~A~~~~~~a~~~-~p~-----~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~ 200 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEE-KLE-----QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHL 200 (336)
T ss_dssp EEEECCCCGGGCCHHH-HHH-----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHH-HHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHH
Confidence 3456666666666653 221 467888889888889999999999999999888871 01117888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q 007648 466 EWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR 545 (594)
Q Consensus 466 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 545 (594)
.+|.++.+.|++++|+..|+++++.+|+ ++..|..++.++..+|++++|+..|+++++++
T Consensus 201 nla~~~~~~g~~~~A~~~~~~al~~~p~--------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 201 NLAMCHLKLQAFSAAIESCNKALELDSN--------------------NEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 8888888899999999999999999884 56788888888889999999999999999999
Q ss_pred CCchHHHHHHHHHHHHhchhhhhh
Q 007648 546 IATPQIIINYALLLEVWTLLHVFL 569 (594)
Q Consensus 546 P~~~~~~~~~~~~~~~~g~~~~a~ 569 (594)
|+++.++.+++.++...|++++|.
T Consensus 261 P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 261 PNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888888873
No 116
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.37 E-value=2.3e-12 Score=116.44 Aligned_cols=151 Identities=11% Similarity=0.056 Sum_probs=112.8
Q ss_pred CchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HcCCchHHH
Q 007648 80 THPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVE-QEGIPIETS 158 (594)
Q Consensus 80 ~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~-~~~~~~~~a 158 (594)
..|++++|...|+++++.+|+++.+|..++.++..+|++++|...|++++...| + ..++...+.+.. ..+.. ..|
T Consensus 18 ~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~--~~~~~~~~~~~~~~~~~~-~~a 93 (176)
T 2r5s_A 18 QQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-D--NSYKSLIAKLELHQQAAE-SPE 93 (176)
T ss_dssp HTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C--HHHHHHHHHHHHHHHHTS-CHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C--hHHHHHHHHHHHHhhccc-chH
Confidence 347888888888888888888888888888888888888888888888888888 4 344443332321 22223 457
Q ss_pred HHHHHHHHhhCCCCHHH---HHHHHHhcccHHHHHHHHHHhhc-CcccccccccchHHHHHHHHHHHhhcccccccCcHH
Q 007648 159 LRVYRRYLKYDPSHIED---FIEFLVKSKLWQEAAERLASVLN-DDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVD 234 (594)
Q Consensus 159 ~~~~~~~l~~~p~~~~~---~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 234 (594)
+..|+++++.+|++... ++.++...|++++|...|++++. +|.+
T Consensus 94 ~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-------------------------------- 141 (176)
T 2r5s_A 94 LKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA-------------------------------- 141 (176)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT--------------------------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc--------------------------------
Confidence 88888888888888763 45677888888888888887773 1111
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 007648 235 AIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMT 278 (594)
Q Consensus 235 ~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (594)
....+|..++.++...|+.++|...|+++|..
T Consensus 142 ------------~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 142 ------------QDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp ------------TTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred ------------ChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 00357888999999999999999999998864
No 117
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.37 E-value=6.1e-12 Score=113.52 Aligned_cols=129 Identities=14% Similarity=0.228 Sum_probs=114.4
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHH-HHhcC
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEM-ELRHK 475 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~-~~~~~ 475 (594)
|++++|+..|++++... |. .+.+|..+|.++...|++++|+..|+++++.+|+++ .+|..+|.+ +...|
T Consensus 24 ~~~~~A~~~~~~al~~~-p~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~l~~~~~ 93 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRAN-PQ-----NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA----ELYAALATVLYYQAS 93 (177)
T ss_dssp ---CCCCHHHHHHHHHC-CS-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH----HHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHhC-CC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhcC
Confidence 67888999999999864 42 578999999999999999999999999999999999 899999998 67889
Q ss_pred Ch--HHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHH
Q 007648 476 NF--KGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIII 553 (594)
Q Consensus 476 ~~--~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~ 553 (594)
++ ++|+..|+++++.+|+ ++..|..++.++...|++++|...|+++++.+|+++....
T Consensus 94 ~~~~~~A~~~~~~al~~~p~--------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALALDSN--------------------EITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp TCCCHHHHHHHHHHHHHCTT--------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred CcchHHHHHHHHHHHHhCCC--------------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 98 9999999999999995 5688999999999999999999999999999999986554
Q ss_pred HH
Q 007648 554 NY 555 (594)
Q Consensus 554 ~~ 555 (594)
..
T Consensus 154 ~~ 155 (177)
T 2e2e_A 154 LV 155 (177)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 118
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.37 E-value=7e-12 Score=111.69 Aligned_cols=114 Identities=11% Similarity=0.024 Sum_probs=106.0
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhc
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 501 (594)
.+..|..+|..+...|++++|+..|+++++.+|+++ .+|+.++.++.+.|++++|+..|+++++.+|+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-------- 77 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP----IYLSNRAAAYSASGQHEKAAEDAELATVVDPK-------- 77 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------
Confidence 578899999999999999999999999999999999 99999999999999999999999999999995
Q ss_pred cCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 007648 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLL 559 (594)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~ 559 (594)
++..|..++.++...|++++|+..|+++++++|+++.+|.+.+...
T Consensus 78 ------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 78 ------------YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred ------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 6789999999999999999999999999999999999877655543
No 119
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.35 E-value=3.2e-11 Score=116.82 Aligned_cols=213 Identities=12% Similarity=0.138 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhh-----ccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCc
Q 007648 249 GRLWTSLADYYIRRELFEKARDIFEEGMMTV-----VTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSA 323 (594)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (594)
..++..+|..+...|++++|...|++++... ++.+.....+........
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------------- 96 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-------------------------- 96 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHH--------------------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH--------------------------
Confidence 6789999999999999999999999999875 222221122221111110
Q ss_pred chhhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhh-ccCCCChHHHHHHHHHhc--CCch
Q 007648 324 EDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLL-RQNPHNVEQWHRRVKIFE--GNPT 400 (594)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~p~~~~~~~~~~~~~~--~~~~ 400 (594)
..++...+...|++++..... .. ..+|....++..++.++. |+++
T Consensus 97 ---------------------------~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~~~la~~~~~~g~~~ 144 (283)
T 3edt_B 97 ---------------------------KRGKYKEAEPLCKRALEIREK-----VLGKFHPDVAKQLNNLALLCQNQGKAE 144 (283)
T ss_dssp ---------------------------TTTCHHHHHHHHHHHHHHHHH-----HHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred ---------------------------HhccHHHHHHHHHHHHHHHHH-----HcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence 012233344555554321100 01 124666788888888874 8999
Q ss_pred hHHHHHHHHHhcc----CCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---------cCCChhhHHHHHHHH
Q 007648 401 KQILTYTEAVRTV----DPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQV---------NYKTVDHLASIWCEW 467 (594)
Q Consensus 401 ~a~~~y~~Ai~~~----~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~---------~p~~~~~~~~~~~~~ 467 (594)
+|...|++++... .++. .....++..+|.++...|++++|+..|+++++. .|... .+|...
T Consensus 145 ~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~ 218 (283)
T 3edt_B 145 EVEYYYRRALEIYATRLGPDD--PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNK----PIWMHA 218 (283)
T ss_dssp HHHHHHHHHHHHHHHHSCTTC--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCC----CHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHH----HHHHHH
Confidence 9999999999852 1111 114678999999999999999999999999986 34444 567777
Q ss_pred HHHHHhcCC------hHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHH
Q 007648 468 AEMELRHKN------FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (594)
Q Consensus 468 ~~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (594)
+......+. +..+...++......|. .+..+..++.++...|++++|...|+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 219 EEREESKDKRRDSAPYGEYGSWYKACKVDSPT--------------------VNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHHTTCCCCC------------CCCCCCHH--------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH--------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 766554333 33333333333333332 4577889999999999999999999999
Q ss_pred Hhcc
Q 007648 542 LDLR 545 (594)
Q Consensus 542 l~~~ 545 (594)
++..
T Consensus 279 l~~~ 282 (283)
T 3edt_B 279 SRNR 282 (283)
T ss_dssp HTTC
T ss_pred HHhh
Confidence 9864
No 120
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.35 E-value=1.7e-11 Score=101.57 Aligned_cols=115 Identities=11% Similarity=0.071 Sum_probs=107.0
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhc
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 501 (594)
.+..|..+|..+...|++++|+..|++++...|.++ .+|..+|.++...|++++|...++++++..|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-------- 70 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH----VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-------- 70 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc--------
Confidence 357889999999999999999999999999999998 89999999999999999999999999999994
Q ss_pred cCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 007648 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLE 560 (594)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~ 560 (594)
++.+|..++.++...|++++|+..++++++.+|+++.++..++.+..
T Consensus 71 ------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 71 ------------WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred ------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 56889999999999999999999999999999999999999888753
No 121
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.34 E-value=1.2e-12 Score=114.66 Aligned_cols=107 Identities=10% Similarity=0.016 Sum_probs=99.8
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHH
Q 007648 442 ARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFY 521 (594)
Q Consensus 442 A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (594)
+...|++++..+|+++ ..++.+|..+.+.|++++|...|++++..+|+ ++.+|..+
T Consensus 6 ~~~~~~~al~~~p~~~----~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------------------~~~~~~~l 61 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTL----EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY--------------------DSRFFLGL 61 (148)
T ss_dssp CCCSHHHHTTCCHHHH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------CHHHHHHH
T ss_pred hhhhHHHHHcCCHhhH----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc--------------------cHHHHHHH
Confidence 3457899999999998 89999999999999999999999999999995 67999999
Q ss_pred HHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhhhcc
Q 007648 522 VDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFLLHV 572 (594)
Q Consensus 522 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~~~~ 572 (594)
+.++...|++++|+..|+++++++|+++.++.++|.++...|++++|+.++
T Consensus 62 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 112 (148)
T 2vgx_A 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGL 112 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998554
No 122
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.34 E-value=1e-11 Score=103.51 Aligned_cols=107 Identities=17% Similarity=0.209 Sum_probs=92.0
Q ss_pred HhhCCCCHHHHHHHHHHH-HcCCh------hHHHHHHHHHHHhCCCC--------hHHHHHHHHHHHHhccCCCCCchhH
Q 007648 20 LLRNPFSLKLWWRYLVAK-REAPF------KKRFVIYERALKALPGS--------YKLWHAYLIERLSIVKNLPITHPEY 84 (594)
Q Consensus 20 l~~~P~~~~~w~~~~~~~-~~~~~------~~a~~~~e~al~~~P~s--------~~lW~~~~~~~~~~~~~~~~~~~~~ 84 (594)
+...|.|++.|..|+..+ .+|++ ++.+.+|+||+...|.+ .-+|..|+.++ ..+|.
T Consensus 6 ~~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~---------ei~D~ 76 (161)
T 4h7y_A 6 IMMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK---------AIQEP 76 (161)
T ss_dssp ----CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH---------HHHCG
T ss_pred eeeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH---------HhcCH
Confidence 456899999999999955 57888 99999999999999853 36888888774 12788
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 007648 85 ETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVT 135 (594)
Q Consensus 85 ~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~ 135 (594)
++|+.+|+.|+..+..-+.+|+.||+|++++|+...||+++.+|+..+|.+
T Consensus 77 d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 77 DDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp GGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 999999999999988889999999999999999999999999999999975
No 123
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.34 E-value=2.6e-11 Score=101.49 Aligned_cols=118 Identities=14% Similarity=0.237 Sum_probs=109.8
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhc
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 501 (594)
....|..+|..+...|+++.|+..|+++++..|.++ .+|..++.++...|++++|...++++++..|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-------- 75 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA----EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-------- 75 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--------
Confidence 367899999999999999999999999999999998 89999999999999999999999999999884
Q ss_pred cCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhc
Q 007648 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWT 563 (594)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g 563 (594)
++..|..++.++...|++++|...++++++.+|+++.++.+++.++...|
T Consensus 76 ------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 76 ------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred ------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 56888999999999999999999999999999999999999999987765
No 124
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.32 E-value=7.2e-12 Score=105.46 Aligned_cols=102 Identities=11% Similarity=-0.003 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCC
Q 007648 425 LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGN 504 (594)
Q Consensus 425 ~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 504 (594)
.|+..|..+.+.|++++|+..|+++++.+|+++ .+|+.+|.++...|++++|+..|+++++++|+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~----------- 83 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPERE----EAWRSLGLTQAENEKDGLAIIALNHARMLDPK----------- 83 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------
Confidence 467778888888888888888888888888888 88888888888888888888888888888884
Q ss_pred hhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchH
Q 007648 505 EPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550 (594)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~ 550 (594)
++..|..++.++...|++++|+..|+++++.+|+++.
T Consensus 84 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 84 ---------DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred ---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 5678888888888888888888888888888887754
No 125
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.32 E-value=2.4e-11 Score=103.18 Aligned_cols=117 Identities=14% Similarity=0.144 Sum_probs=100.0
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhH--hhhh
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEV--RRRV 499 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~ 499 (594)
.+.++-.+|..+.+.|++++|+..|++|++++|+++ .+|..+|.++.+.|++++|+..+++++++.|+.. +.
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~----~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-- 80 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI----TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYK-- 80 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhH--
Confidence 356788899999999999999999999999999999 8999999999999999999999999999998521 10
Q ss_pred hccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHH
Q 007648 500 AADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALL 558 (594)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~ 558 (594)
.-..++...|.++...|++++|++.|+++++..| +|++...+..+
T Consensus 81 -------------~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~l~~l 125 (127)
T 4gcn_A 81 -------------LIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVKKVKEL 125 (127)
T ss_dssp -------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHHHHHHh
Confidence 0135788889999999999999999999999887 46666555443
No 126
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.31 E-value=2.7e-11 Score=103.86 Aligned_cols=122 Identities=13% Similarity=0.016 Sum_probs=110.5
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhc
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 501 (594)
.+..|..+|..+...|++++|+..|++++..+|+++ .+|+.+|.++...|++++|...++++++..|+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-------- 75 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA----VYYTNRALCYLKMQQPEQALADCRRALELDGQ-------- 75 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch--------
Confidence 578899999999999999999999999999999998 89999999999999999999999999999995
Q ss_pred cCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCC-----chHHHHHHHHHHHHhchhhh
Q 007648 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA-----TPQIIINYALLLEVWTLLHV 567 (594)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-----~~~~~~~~~~~~~~~g~~~~ 567 (594)
++..|..++.++...|++++|+..|++++++.|+ ++.++..+..+..+.....+
T Consensus 76 ------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~e 134 (137)
T 3q49_B 76 ------------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE 134 (137)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred ------------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6688999999999999999999999999999998 77888888887766655444
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.31 E-value=1e-11 Score=121.35 Aligned_cols=176 Identities=11% Similarity=0.103 Sum_probs=138.5
Q ss_pred CCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhh
Q 007648 382 PHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDH 459 (594)
Q Consensus 382 p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~ 459 (594)
|.++..+..+|..+. |++++|+..|++|+.. .|. ...+|..+|.++...|++++|+..++++++.+|+++
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-- 72 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR-NPL-----VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV-- 72 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH--
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCc-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH--
Confidence 567788888888764 8999999999999996 443 578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhH-------hhhhhccCChh----hhHHhhccHhhHHHHHHHHHHh
Q 007648 460 LASIWCEWAEMELRHKNFKGALELMRRATAEPSVEV-------RRRVAADGNEP----VQMKLHKSLRLWTFYVDLEESL 528 (594)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 528 (594)
.+++.+|..+...|++++|...|+++++..|++. ...+....... .......++.+...++.+. .
T Consensus 73 --~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~ 148 (281)
T 2c2l_A 73 --KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLI--A 148 (281)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--H
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--H
Confidence 9999999999999999999999999999999631 00000000000 0001113556666666664 6
Q ss_pred CChHHHHHHHHHHHhccCCchHHHHHHHHHHHHh-chhhhhh
Q 007648 529 GNLESTRAVYERILDLRIATPQIIINYALLLEVW-TLLHVFL 569 (594)
Q Consensus 529 g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~-g~~~~a~ 569 (594)
|++++|++.|+++++++|++..+...+..++.+. +.+++|.
T Consensus 149 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~ 190 (281)
T 2c2l_A 149 AERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMD 190 (281)
T ss_dssp HHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998888888777766 5566665
No 128
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.28 E-value=3.2e-11 Score=118.22 Aligned_cols=172 Identities=13% Similarity=0.016 Sum_probs=146.2
Q ss_pred HhHHHHh-hCCCCHHHHHHHHHHH-HcCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHH
Q 007648 15 LYEEELL-RNPFSLKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFE 92 (594)
Q Consensus 15 ~~e~~l~-~~P~~~~~w~~~~~~~-~~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 92 (594)
.+...+. .-|.+.+.+...+... ..|+++.|...|+++++.+|.++++|..++... ...|++++|...|+
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~--------~~~g~~~~A~~~l~ 175 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETL--------IALNRSEDAEAVLX 175 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHH--------HHTTCHHHHHHHHT
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHH--------HHCCCHHHHHHHHH
Confidence 3344443 3688899998888854 589999999999999999999999999988876 44599999999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCC
Q 007648 93 RALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSH 172 (594)
Q Consensus 93 ~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~ 172 (594)
+++..+|+....+...+..+..+++.+.|...|++++...|.+ ..+|..++..+...|++ ++|+..|+++++.+|++
T Consensus 176 ~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~--~~~~~~la~~l~~~g~~-~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 176 TIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPED--AALATQLALQLHQVGRN-EEALELLFGHLRXDLTA 252 (287)
T ss_dssp TSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTG
T ss_pred hCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCcc--HHHHHHHHHHHHHcccH-HHHHHHHHHHHhccccc
Confidence 9999999766666666666777888888999999999999986 78999999999999999 99999999999999998
Q ss_pred --HH---HHHHHHHhcccHHHHHHHHHHhh
Q 007648 173 --IE---DFIEFLVKSKLWQEAAERLASVL 197 (594)
Q Consensus 173 --~~---~~~~~~~~~~~~~~a~~~~~~~~ 197 (594)
.. .++.++...|+.++|...|++.+
T Consensus 253 ~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 253 ADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp GGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 43 45677888899999999988876
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.27 E-value=9.6e-11 Score=108.83 Aligned_cols=146 Identities=6% Similarity=0.065 Sum_probs=119.3
Q ss_pred HHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHH
Q 007648 388 WHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWC 465 (594)
Q Consensus 388 ~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~ 465 (594)
++.+|..+ .|++++|+..|++++ +| .+.+|..+|.++...|++++|+..|+++++.+|+++ .+|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~---~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~ 75 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ---DP------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA----VAYF 75 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS---SC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc---CC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch----HHHH
Confidence 34445544 489999999999985 33 468999999999999999999999999999999999 9999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcCCchhH---hhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHH
Q 007648 466 EWAEMELRHKNFKGALELMRRATAEPSVEV---RRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERIL 542 (594)
Q Consensus 466 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 542 (594)
.+|.++...|++++|...|+++++..|++. +..++.... ..++..|..++.++...|++++|+..|++++
T Consensus 76 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 76 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFK-------LFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCE-------EEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccC-------ccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999999999999999999988521 111100000 0245789999999999999999999999999
Q ss_pred hccCCchHHHH
Q 007648 543 DLRIATPQIII 553 (594)
Q Consensus 543 ~~~P~~~~~~~ 553 (594)
+.+|++.....
T Consensus 149 ~~~p~~~~~~~ 159 (213)
T 1hh8_A 149 SMKSEPRHSKI 159 (213)
T ss_dssp TTCCSGGGGHH
T ss_pred HcCcccccchH
Confidence 99998765433
No 130
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.26 E-value=2.1e-11 Score=105.69 Aligned_cols=107 Identities=12% Similarity=0.010 Sum_probs=99.1
Q ss_pred hhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 007648 377 LLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNY 454 (594)
Q Consensus 377 ~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p 454 (594)
++..+|++...++.++..+. |++++|+..|++++.. +|. .+.+|..+|.++...|++++|+..|++++..+|
T Consensus 10 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML-DHY-----DARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh-CCc-----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 58889999999999988774 8999999999999986 443 679999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCch
Q 007648 455 KTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSV 493 (594)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 493 (594)
+++ .+|+.+|.++...|++++|+..|+++++..|+
T Consensus 84 ~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 84 NEP----RFPFHAAECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp TCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred CCc----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999 99999999999999999999999999999885
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.26 E-value=1.8e-11 Score=122.85 Aligned_cols=146 Identities=10% Similarity=0.061 Sum_probs=125.6
Q ss_pred hhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCccc---------CCchHHHHHHHHHHHhcCCHHHHHHH
Q 007648 377 LLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAV---------GKPHTLWVAFAKLYETYKDIANARVI 445 (594)
Q Consensus 377 ~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~A~~~ 445 (594)
++..+|.++.+|..+|..+. |++++|+..|++|+...|..... .....+|.++|.++...|++++|+..
T Consensus 139 a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 218 (336)
T 1p5q_A 139 NSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIES 218 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45667888999999988874 89999999999999974431000 00158999999999999999999999
Q ss_pred HHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHH
Q 007648 446 FDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLE 525 (594)
Q Consensus 446 ~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (594)
|++|++.+|+++ .+|+.+|.++...|++++|+..|+++++++|+ ++.++..++.++
T Consensus 219 ~~~al~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--------------------~~~a~~~l~~~~ 274 (336)
T 1p5q_A 219 CNKALELDSNNE----KGLSRRGEAHLAVNDFELARADFQKVLQLYPN--------------------NKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS--------------------CHHHHHHHHHHH
T ss_pred HHHHHHhCCCcH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--------------------CHHHHHHHHHHH
Confidence 999999999999 99999999999999999999999999999995 568889999999
Q ss_pred HHhCChHHH-HHHHHHHHhccC
Q 007648 526 ESLGNLEST-RAVYERILDLRI 546 (594)
Q Consensus 526 ~~~g~~~~A-~~~~~~al~~~P 546 (594)
.+.|++++| ++.|++++...+
T Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMFERLA 296 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 999999998 678888887543
No 132
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.26 E-value=4.6e-11 Score=106.04 Aligned_cols=124 Identities=10% Similarity=0.002 Sum_probs=108.4
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------------------cCCChhhHHHHHHHHHHHHHhcCChHHHHHH
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQV------------------NYKTVDHLASIWCEWAEMELRHKNFKGALEL 483 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~------------------~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 483 (594)
.+..+...|..+...|+++.|+..|++|+.. +|.++ .+|..+|.++.+.|++++|+..
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~nla~~~~~~~~~~~A~~~ 85 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNI----PLYANMSQCYLNIGDLHEAEET 85 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHH----HHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH----HHHHHHHHHHHhcCcHHHHHHH
Confidence 3567888899999999999999999999998 55555 7899999999999999999999
Q ss_pred HHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCch-HHHHHHHHHHHHh
Q 007648 484 MRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP-QIIINYALLLEVW 562 (594)
Q Consensus 484 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~-~~~~~~~~~~~~~ 562 (594)
++++++.+|+ ++..|...|.++..+|++++|+..|+++++++|+++ .+...+..+..+.
T Consensus 86 ~~~al~~~p~--------------------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 86 SSEVLKREET--------------------NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHHHHHHSTT--------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCc--------------------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999995 678899999999999999999999999999999999 6777888887777
Q ss_pred chhhhhh
Q 007648 563 TLLHVFL 569 (594)
Q Consensus 563 g~~~~a~ 569 (594)
+...+..
T Consensus 146 ~~~~~~~ 152 (162)
T 3rkv_A 146 AEKKADS 152 (162)
T ss_dssp HHHTTSS
T ss_pred HHHHHHH
Confidence 6665543
No 133
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=6.6e-11 Score=102.62 Aligned_cols=120 Identities=13% Similarity=0.048 Sum_probs=103.5
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhc
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 501 (594)
....|...|..+...|++++|+..|+++++..|+++. ...+|..++.++...|++++|+..++++++..|+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-------- 97 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD-QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-------- 97 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchH-HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc--------
Confidence 5778888899999999999999999999999988711 1178889999988999999999999999999884
Q ss_pred cCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHh
Q 007648 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVW 562 (594)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~ 562 (594)
++..|..++.++...|++++|+..|+++++.+|+++.++..++.+..+.
T Consensus 98 ------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (148)
T 2dba_A 98 ------------DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPS 146 (148)
T ss_dssp ------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCSC
T ss_pred ------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhhc
Confidence 5688889999999999999999999999999999999998888876543
No 134
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.25 E-value=7.7e-12 Score=131.13 Aligned_cols=147 Identities=11% Similarity=0.038 Sum_probs=123.4
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh-----------hhHHHHHH
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTV-----------DHLASIWC 465 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~-----------~~~~~~~~ 465 (594)
+++++|...|++++... |. ....|..+|..+...|++++|+..|++|++..|.++ .....+|+
T Consensus 248 ~~~~~A~~~~~~~~~~~-~~-----~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~ 321 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-LE-----QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL 321 (457)
T ss_dssp EEEECCCCGGGSCHHHH-HH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH-HH-----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHH
Confidence 34666666776666532 21 567899999999999999999999999999999882 01127899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q 007648 466 EWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR 545 (594)
Q Consensus 466 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 545 (594)
.++.++.+.|++++|+..|++|++++|+ ++..|..++.++..+|++++|+..|++|++++
T Consensus 322 nla~~~~~~g~~~~A~~~~~~al~~~p~--------------------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 322 NLAMCYLKLREYTKAVECCDKALGLDSA--------------------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT--------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCc--------------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999995 56889999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHhchhhhhh
Q 007648 546 IATPQIIINYALLLEVWTLLHVFL 569 (594)
Q Consensus 546 P~~~~~~~~~~~~~~~~g~~~~a~ 569 (594)
|+++.++.+++.++...|+++++.
T Consensus 382 P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 382 PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998876
No 135
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.23 E-value=3.5e-11 Score=104.39 Aligned_cols=118 Identities=14% Similarity=0.063 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChh----h----HHHHHHHHHHHHHhcCChHHHHHHHHHHhcC----
Q 007648 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVD----H----LASIWCEWAEMELRHKNFKGALELMRRATAE---- 490 (594)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~----~----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---- 490 (594)
...|...|..+...|++++|+..|++||+.+|++|+ . ...+|...|..+.+.|++++|+..+++||++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 567888999999999999999999999999999321 0 1138999999999999999999999999999
Q ss_pred ---CchhHhhhhhccCChhhhHHhhccHhhH----HHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 007648 491 ---PSVEVRRRVAADGNEPVQMKLHKSLRLW----TFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLE 560 (594)
Q Consensus 491 ---~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~ 560 (594)
+|+ +...| ...|..+..+|++++|+..|++|+++.|++..+...+..+..
T Consensus 91 ~e~~pd--------------------~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~ 147 (159)
T 2hr2_A 91 GELNQD--------------------EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMME 147 (159)
T ss_dssp CCTTST--------------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHH
T ss_pred ccCCCc--------------------hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 995 56888 999999999999999999999999999999877665555543
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.22 E-value=1.3e-10 Score=124.49 Aligned_cols=161 Identities=12% Similarity=0.123 Sum_probs=142.9
Q ss_pred hhccCCCChHHHHHHHHHhc--CC----------chhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcC--CHHHH
Q 007648 377 LLRQNPHNVEQWHRRVKIFE--GN----------PTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYK--DIANA 442 (594)
Q Consensus 377 ~l~~~p~~~~~~~~~~~~~~--~~----------~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A 442 (594)
++..+|++..+|+.++.++. ++ +++++..+++++.. .|+ +..+|.+-+-+..+.| +++++
T Consensus 55 ~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~-~pK-----~y~aW~hR~w~l~~l~~~~~~~e 128 (567)
T 1dce_A 55 ILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-NPK-----SYGTWHHRCWLLSRLPEPNWARE 128 (567)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-CTT-----CHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh-CCC-----CHHHHHHHHHHHHHcccccHHHH
Confidence 68999999999999888775 44 89999999999986 453 6799999999999999 77999
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHH
Q 007648 443 RVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK-NFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFY 521 (594)
Q Consensus 443 ~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (594)
.+.++++++.+|++. .+|...+.+..+.| .++++.+.++++++.+|+ +...|...
T Consensus 129 l~~~~k~l~~d~~N~----~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~--------------------n~saW~~r 184 (567)
T 1dce_A 129 LELCARFLEADERNF----HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS--------------------NYSSWHYR 184 (567)
T ss_dssp HHHHHHHHHHCTTCH----HHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC--------------------CHHHHHHH
T ss_pred HHHHHHHHhhccccc----cHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC--------------------CccHHHHH
Confidence 999999999999999 99999998888888 899999999999999995 66888888
Q ss_pred HHHHHHh--------------CChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhh
Q 007648 522 VDLEESL--------------GNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHV 567 (594)
Q Consensus 522 ~~~~~~~--------------g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~ 567 (594)
+.+..++ +.++++.+.+.+|+.++|++..+|..++.++.+.|.+++
T Consensus 185 ~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 8887775 567999999999999999999999999999988777444
No 137
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.22 E-value=1.5e-10 Score=97.74 Aligned_cols=126 Identities=11% Similarity=0.063 Sum_probs=108.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhc
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 501 (594)
.+..|..+|..+...|++++|+..|++++...|.++ .+++.+|.++...|++++|...+++++...|++.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~------ 72 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM----TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR------ 72 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc------
Confidence 357889999999999999999999999999999998 8999999999999999999999999999988410
Q ss_pred cCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchh
Q 007648 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLL 565 (594)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~ 565 (594)
.. ....+.+|..++.++...|++++|+..|+++++..| ++.++..++.+....+..
T Consensus 73 -~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 73 -ED------YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp -TC------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred -hh------HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 00 000157889999999999999999999999999998 689999888887765543
No 138
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.21 E-value=1.9e-10 Score=101.92 Aligned_cols=131 Identities=11% Similarity=0.019 Sum_probs=111.5
Q ss_pred hHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHH
Q 007648 385 VEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLAS 462 (594)
Q Consensus 385 ~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~ 462 (594)
+..|..+|..+ .|++++|...|++++...|. ...+|..+|.++...|++++|+..++++++.+|.++ .
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~----~ 82 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI----K 82 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----H
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH----H
Confidence 45566666665 48999999999999996433 578999999999999999999999999999999999 8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhH--HHHHHHHHHhCChHHHHHHHHH
Q 007648 463 IWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLW--TFYVDLEESLGNLESTRAVYER 540 (594)
Q Consensus 463 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~A~~~~~~ 540 (594)
+|+.+|.++...|++++|+..|+++++..|+ ++..+ ...+..+...|++++|.+.+++
T Consensus 83 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 83 GYYRRAASNMALGKFRAALRDYETVVKVKPH--------------------DKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--------------------CHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 9999999999999999999999999999995 34455 4444457778999999999998
Q ss_pred HHhcc
Q 007648 541 ILDLR 545 (594)
Q Consensus 541 al~~~ 545 (594)
+....
T Consensus 143 ~~~~~ 147 (166)
T 1a17_A 143 KRSVV 147 (166)
T ss_dssp HHHHH
T ss_pred hHHHh
Confidence 87653
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.20 E-value=1.2e-10 Score=104.93 Aligned_cols=124 Identities=9% Similarity=0.104 Sum_probs=110.4
Q ss_pred cCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHH-HHhccc
Q 007648 39 EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLET-LTSQKF 117 (594)
Q Consensus 39 ~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~-~~~~~~ 117 (594)
.|++++|...|+++++.+|.++..|..++... ...|++++|+..|+++++.+|.++.+|..++.+ +...|+
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~--------~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~ 94 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYY--------LWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQ 94 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHH--------HHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCC
Confidence 57889999999999999999999999888776 345899999999999999999999999999999 778899
Q ss_pred H--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCH
Q 007648 118 I--TKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHI 173 (594)
Q Consensus 118 ~--~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~ 173 (594)
+ +.|...|++++...|.+ ...|..++.++...|++ ++|...|+++++.+|++.
T Consensus 95 ~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALDSNE--ITALMLLASDAFMQANY-AQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp CCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTCCTTS
T ss_pred cchHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcccH-HHHHHHHHHHHhhCCCCc
Confidence 8 99999999999999986 78888889988899999 999999999999999875
No 140
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.20 E-value=6.5e-10 Score=103.52 Aligned_cols=158 Identities=13% Similarity=0.014 Sum_probs=134.8
Q ss_pred CCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcC----CHHHHHHHHHHHHhccCC
Q 007648 382 PHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYK----DIANARVIFDKAVQVNYK 455 (594)
Q Consensus 382 p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~----~~~~A~~~~~kal~~~p~ 455 (594)
..++.+++.++.++. +++++|+..|++|+..- .+.++..+|.++.. + ++++|+..|++|. .+.
T Consensus 15 ~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--------~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~--~~g 83 (212)
T 3rjv_A 15 AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--------DGDALALLAQLKIR-NPQQADYPQARQLAEKAV--EAG 83 (212)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH--HTT
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH--HCC
Confidence 478999999998874 89999999999999741 57899999999987 6 8999999999996 567
Q ss_pred ChhhHHHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHH----
Q 007648 456 TVDHLASIWCEWAEMELR----HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEES---- 527 (594)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 527 (594)
++ ..++.++.++.. .+++++|..+|+++++..|.+ .++..+..++.++..
T Consensus 84 ~~----~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~------------------~~~~a~~~Lg~~y~~g~g~ 141 (212)
T 3rjv_A 84 SK----SGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD------------------AAVDAQMLLGLIYASGVHG 141 (212)
T ss_dssp CH----HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH------------------HHHHHHHHHHHHHHHTSSS
T ss_pred CH----HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc------------------chHHHHHHHHHHHHcCCCC
Confidence 77 888899998877 789999999999999998720 025778888999988
Q ss_pred hCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHh-c-----hhhhhhhccc
Q 007648 528 LGNLESTRAVYERILDLRIATPQIIINYALLLEVW-T-----LLHVFLLHVP 573 (594)
Q Consensus 528 ~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~-g-----~~~~a~~~~~ 573 (594)
.+++++|+.+|++|++. |.++.+..+++.++..- | ++++|+..+.
T Consensus 142 ~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~ 192 (212)
T 3rjv_A 142 PEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLN 192 (212)
T ss_dssp SCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Confidence 78999999999999998 88899999999999754 3 7888886554
No 141
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.20 E-value=2.6e-10 Score=104.81 Aligned_cols=128 Identities=13% Similarity=0.017 Sum_probs=109.6
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhh------------HHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDH------------LASIWCEWAEMELRHKNFKGALELMRRATA 489 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 489 (594)
....|...|..+...|++++|+..|++++...|.+++. ...+|..+|.++...|++++|+..++++++
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 35677888888888999999999999999988877520 126788889998999999999999999999
Q ss_pred CCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhh
Q 007648 490 EPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFL 569 (594)
Q Consensus 490 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~ 569 (594)
..|+ ++..+..++.++...|++++|+..|+++++++|+++.++..++.++...|+..++.
T Consensus 117 ~~p~--------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 117 IDKN--------------------NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HSTT--------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred hCcc--------------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9984 56888999999999999999999999999999999999999999999998888876
No 142
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.19 E-value=3.4e-10 Score=112.04 Aligned_cols=168 Identities=9% Similarity=0.013 Sum_probs=124.7
Q ss_pred hHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC--hhhH
Q 007648 385 VEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKT--VDHL 460 (594)
Q Consensus 385 ~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~--~~~~ 460 (594)
..++..++.++. |++++|+..|++|+...............+..+|.++.. |++++|+..|++|+.+.|.. +...
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~ 154 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQA 154 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHH
Confidence 456677777774 899999999999998532211011135788999999988 99999999999999987653 2233
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHH
Q 007648 461 ASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540 (594)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 540 (594)
..++..+|.++.+.|++++|+..|+++++..|... . .......+...+.++...|++++|+..|++
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--------~------~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME--------N------YPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------C------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--------C------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 47889999999999999999999999999877411 0 000124677788888889999999999999
Q ss_pred HHhccCCchH-----HHHHHHHHHHHhchhhhhh
Q 007648 541 ILDLRIATPQ-----IIINYALLLEVWTLLHVFL 569 (594)
Q Consensus 541 al~~~P~~~~-----~~~~~~~~~~~~g~~~~a~ 569 (594)
++ ..|..+. ....++..+ ..|+.+.+.
T Consensus 221 al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~ 252 (307)
T 2ifu_A 221 SY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLL 252 (307)
T ss_dssp HT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred Hh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHH
Confidence 99 9997653 334555555 456554443
No 143
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.19 E-value=9.6e-10 Score=108.76 Aligned_cols=172 Identities=13% Similarity=0.178 Sum_probs=132.9
Q ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcch
Q 007648 246 DEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAED 325 (594)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 325 (594)
+++..++..+..+....+..++|.+.++++|..+|++. .+|+.....-.. ++.
T Consensus 51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~y---taWn~R~~iL~~--------l~~---------------- 103 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHY---TVWQYRFSLLTS--------LNK---------------- 103 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHH--------TTC----------------
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhH---HHHHHHHHHHHH--------hhh----------------
Confidence 34456666666666667777899999999999999876 455433222111 110
Q ss_pred hhhHhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc---C-Cchh
Q 007648 326 EDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE---G-NPTK 401 (594)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~---~-~~~~ 401 (594)
.+..++..++. ++..+|.+..+|..++.++. + ++++
T Consensus 104 ----------------------------~l~eEL~~~~~------------~L~~nPKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 104 ----------------------------SLEDELRLMNE------------FAVQNLKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp ----------------------------CHHHHHHHHHH------------HHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred ----------------------------hHHHHHHHHHH------------HHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence 13334555666 58899999999998887764 5 7899
Q ss_pred HHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhccCCChhhHHHHHHHHHHHHHh
Q 007648 402 QILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIA--------NARVIFDKAVQVNYKTVDHLASIWCEWAEMELR 473 (594)
Q Consensus 402 a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~ 473 (594)
++..+++++.. +|. +..+|..-+-+....|.++ ++.+.++++++.+|.|. ++|...+.+..+
T Consensus 144 EL~~~~k~L~~-dpk-----Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~----SAW~~R~~lL~~ 213 (349)
T 3q7a_A 144 EIEYIHGSLLP-DPK-----NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNN----SAWGWRWYLRVS 213 (349)
T ss_dssp HHHHHHHHTSS-CTT-----CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHTT
T ss_pred HHHHHHHHHHh-CCC-----CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHh
Confidence 99999999985 553 5689998888887777766 99999999999999999 999999988877
Q ss_pred cCC-------hHHHHHHHHHHhcCCchh
Q 007648 474 HKN-------FKGALELMRRATAEPSVE 494 (594)
Q Consensus 474 ~~~-------~~~A~~~~~~al~~~p~~ 494 (594)
.++ ++++.+.+++++..+|++
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~P~n 241 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLIPHN 241 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCCC
Confidence 776 789999999999999974
No 144
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.19 E-value=1.9e-10 Score=97.10 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=91.3
Q ss_pred CCChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhh
Q 007648 382 PHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDH 459 (594)
Q Consensus 382 p~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~ 459 (594)
|.+++.|..+|..+ .|++++|+..|++|+... |. .+.+|..+|.++...|++++|+..|+++++.+|+++
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-- 72 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PE-----DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV-- 72 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC-----ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH--
Confidence 44567788887776 489999999999999964 43 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCc
Q 007648 460 LASIWCEWAEMELRHKNFKGALELMRRATAEPS 492 (594)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 492 (594)
.+|+.+|.++...|++++|+..|+++++.+|
T Consensus 73 --~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 103 (126)
T 3upv_A 73 --RAYIRKATAQIAVKEYASALETLDAARTKDA 103 (126)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999994
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.18 E-value=3.2e-10 Score=96.18 Aligned_cols=123 Identities=16% Similarity=0.124 Sum_probs=107.5
Q ss_pred hccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 007648 378 LRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK 455 (594)
Q Consensus 378 l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~ 455 (594)
....|.++.+|+.++..+. |++++|...|++++.. .|. ...+|..+|.++...|++++|+..++++++..|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 82 (133)
T 2lni_A 9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR-NPK-----DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT 82 (133)
T ss_dssp CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-CTT-----CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT
T ss_pred CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCC-----cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 3456788899999988874 8999999999999986 342 5789999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCC
Q 007648 456 TVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN 530 (594)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 530 (594)
++ .+|+.+|.++.+.|++++|+..|+++++..|+ ++.++..++.++.+.|+
T Consensus 83 ~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~--------------------~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 83 FI----KGYTRKAAALEAMKDYTKAMDVYQKALDLDSS--------------------CKEAADGYQRCMMAQYN 133 (133)
T ss_dssp CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG--------------------GTHHHHHHHHHHHHHTC
T ss_pred ch----HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC--------------------chHHHHHHHHHHHHhcC
Confidence 99 89999999999999999999999999999995 44677777777776664
No 146
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.18 E-value=1.7e-10 Score=97.31 Aligned_cols=123 Identities=11% Similarity=0.013 Sum_probs=108.7
Q ss_pred ccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC
Q 007648 379 RQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKT 456 (594)
Q Consensus 379 ~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~ 456 (594)
..+|.+...|..++..+. |++++|...|++++...|. ...+|..+|.++...|++++|+..+++++...|++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 79 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA------NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY 79 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC
Confidence 445677888888888764 8999999999999986433 57899999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCCh
Q 007648 457 VDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNL 531 (594)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 531 (594)
+ .+|+.+|.++...|++++|...|+++++..|+ ++..+..++.++.+.|++
T Consensus 80 ~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~--------------------~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 80 S----KAYGRMGLALSSLNKHVEAVAYYKKALELDPD--------------------NETYKSNLKIAELKLREA 130 (131)
T ss_dssp H----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------------------CHHHHHHHHHHHHHHTTC
T ss_pred H----HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc--------------------chHHHHHHHHHHHHHhcC
Confidence 8 89999999999999999999999999999995 567888889988888875
No 147
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.18 E-value=2.3e-11 Score=128.06 Aligned_cols=125 Identities=15% Similarity=0.112 Sum_probs=111.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCC
Q 007648 425 LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGN 504 (594)
Q Consensus 425 ~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 504 (594)
.|..+|..+...|++++|+..|++|++.+|+++ .+|..+|.++.+.|++++|++.+++|++.+|+
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~----------- 72 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNA----IYYGNRSLAYLRTECYGYALGDATRAIELDKK----------- 72 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-----------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-----------
Confidence 344556667789999999999999999999998 99999999999999999999999999999995
Q ss_pred hhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHH--HHHhchhhhhhhccc
Q 007648 505 EPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALL--LEVWTLLHVFLLHVP 573 (594)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~--~~~~g~~~~a~~~~~ 573 (594)
++..|..++.++..+|++++|.+.|+++++++|+++.++.+++.+ +.+.|++++|++.++
T Consensus 73 ---------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 73 ---------YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp ---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred ---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 568899999999999999999999999999999999999999988 888999999998776
No 148
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.18 E-value=2.1e-10 Score=106.55 Aligned_cols=120 Identities=13% Similarity=-0.071 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccC
Q 007648 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADG 503 (594)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 503 (594)
..++.+|..+...|++++|+..|++++ +| ++ .+|+.+|.++.+.|++++|+..|+++++.+|+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---------- 69 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HS----RICFNIGCMYTILKNMTEAEKAFTRSINRDKH---------- 69 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-Ch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----------
Confidence 346678888889999999999999996 33 66 89999999999999999999999999999995
Q ss_pred ChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCch----------------HHHHHHHHHHHHhchhhh
Q 007648 504 NEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP----------------QIIINYALLLEVWTLLHV 567 (594)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~----------------~~~~~~~~~~~~~g~~~~ 567 (594)
++..|..++.++...|++++|...|+++++..|+++ .++.++|.++...|++++
T Consensus 70 ----------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 139 (213)
T 1hh8_A 70 ----------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKK 139 (213)
T ss_dssp ----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHH
T ss_pred ----------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHH
Confidence 568899999999999999999999999999888776 999999999999999998
Q ss_pred hhh
Q 007648 568 FLL 570 (594)
Q Consensus 568 a~~ 570 (594)
|+.
T Consensus 140 A~~ 142 (213)
T 1hh8_A 140 AEE 142 (213)
T ss_dssp HHH
T ss_pred HHH
Confidence 873
No 149
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.16 E-value=3.5e-10 Score=95.67 Aligned_cols=121 Identities=10% Similarity=-0.063 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCC
Q 007648 425 LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGN 504 (594)
Q Consensus 425 ~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 504 (594)
.++..|..+...|++++|+..|+++++..|+++.. ..+++.+|.++.+.|++++|+..|+++++..|++.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~--------- 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYT-PNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD--------- 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST---------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCccc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc---------
Confidence 46778888999999999999999999999988632 14788899999999999999999999999999510
Q ss_pred hhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhc
Q 007648 505 EPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWT 563 (594)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g 563 (594)
..+..+..++.++...|++++|+..|+++++..|+++.+......+-...+
T Consensus 74 --------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 74 --------KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp --------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred --------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 015778899999999999999999999999999999988776666554443
No 150
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.15 E-value=3e-10 Score=115.35 Aligned_cols=125 Identities=8% Similarity=-0.011 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------ccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007648 423 HTLWVAFAKLYETYKDIANARVIFDKAVQ----------------VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRR 486 (594)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~kal~----------------~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 486 (594)
...|..+|..+.+.|++++|+..|++|++ ..|.++ .+|..++.++.+.|++++|+..+++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~----~~~~nla~~~~~~g~~~~A~~~~~~ 298 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVAL----SCVLNIGACKLKMSDWQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHH----HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHH----HHHHHHHHHHHhccCHHHHHHHHHH
Confidence 46688889999999999999999999998 566666 8999999999999999999999999
Q ss_pred HhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhh
Q 007648 487 ATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLH 566 (594)
Q Consensus 487 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~ 566 (594)
|++.+|+ ++..|..++.++..+|++++|+..|++|++++|+++.++..++.++...++++
T Consensus 299 al~~~p~--------------------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 299 ALEIDPS--------------------NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp HHTTCTT--------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCch--------------------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999995 67889999999999999999999999999999999999999999999999999
Q ss_pred hhhhc
Q 007648 567 VFLLH 571 (594)
Q Consensus 567 ~a~~~ 571 (594)
++...
T Consensus 359 ~a~k~ 363 (370)
T 1ihg_A 359 DKEKA 363 (370)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 88643
No 151
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.15 E-value=1e-09 Score=108.14 Aligned_cols=176 Identities=12% Similarity=0.132 Sum_probs=143.9
Q ss_pred hhccCCCChHHHHHHHHHhc--CC----------chhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcC--CHHHH
Q 007648 377 LLRQNPHNVEQWHRRVKIFE--GN----------PTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYK--DIANA 442 (594)
Q Consensus 377 ~l~~~p~~~~~~~~~~~~~~--~~----------~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A 442 (594)
++..+|.+..+|+..+.++. +. +++++..++.++.. +|. +..+|.+-+.+....| +++++
T Consensus 56 ~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~-~PK-----ny~aW~hR~wlL~~l~~~~~~~E 129 (331)
T 3dss_A 56 ILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-NPK-----SYGTWHHRCWLLSRLPEPNWARE 129 (331)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-CTT-----CHHHHHHHHHHHHHCSSCCHHHH
T ss_pred HHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh-CCC-----CHHHHHHHHHHHhccCcccHHHH
Confidence 68999999999999887774 22 57888999998885 443 6799999999988888 48999
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCC-hHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHH
Q 007648 443 RVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN-FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFY 521 (594)
Q Consensus 443 ~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (594)
...++++++.+|.|. .+|...+.+....|. ++++.+.++++++.+|. +...|.+.
T Consensus 130 L~~~~k~l~~dprNy----~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~--------------------N~SAW~~R 185 (331)
T 3dss_A 130 LELCARFLEADERNF----HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS--------------------NYSSWHYR 185 (331)
T ss_dssp HHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC--------------------CHHHHHHH
T ss_pred HHHHHHHHHhCCCCH----HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC--------------------CHHHHHHH
Confidence 999999999999999 999999888878887 58999999999999995 66888888
Q ss_pred HHHHHHh--------------CChHHHHHHHHHHHhccCCchHHHHHHHHHHHHh-c-----------------hhhhhh
Q 007648 522 VDLEESL--------------GNLESTRAVYERILDLRIATPQIIINYALLLEVW-T-----------------LLHVFL 569 (594)
Q Consensus 522 ~~~~~~~--------------g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~-g-----------------~~~~a~ 569 (594)
+.+..++ +.++++.+.+.+++..+|++..+|..+..++.+. | .+++++
T Consensus 186 ~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ell 265 (331)
T 3dss_A 186 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQ 265 (331)
T ss_dssp HHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHH
Confidence 8888777 4588999999999999999999997554444433 2 355556
Q ss_pred hcccCcccchhhhhh
Q 007648 570 LHVPFTFSGLCMFTF 584 (594)
Q Consensus 570 ~~~~~~~~~~~~~~~ 584 (594)
+..|-. -||..+.
T Consensus 266 e~~pd~--~w~l~~~ 278 (331)
T 3dss_A 266 ELEPEN--KWCLLTI 278 (331)
T ss_dssp HHCTTC--HHHHHHH
T ss_pred hhCccc--chHHHHH
Confidence 777743 5676554
No 152
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.14 E-value=3.4e-10 Score=108.41 Aligned_cols=182 Identities=10% Similarity=-0.028 Sum_probs=145.2
Q ss_pred hHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHH-------HHHhc--CCchhHHHHHHHHHhccCCCcc------
Q 007648 354 DVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRR-------VKIFE--GNPTKQILTYTEAVRTVDPMKA------ 418 (594)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-------~~~~~--~~~~~a~~~y~~Ai~~~~~~~~------ 418 (594)
+...+...|.+ ++..+|...++|..+ +..+. ++..++...+.+++.. +|...
T Consensus 21 d~~~A~~~F~~------------a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l-~p~~l~a~~~~ 87 (282)
T 4f3v_A 21 SEARSLDLFTE------------ITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI-SMSTLNARIAI 87 (282)
T ss_dssp CHHHHHHHHHH------------HHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC-CGGGGCCEEEC
T ss_pred CHHHHHHHHHH------------HHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC-Chhhhhhhhcc
Confidence 45567778888 589999999999998 44443 4567778888888873 45321
Q ss_pred cCCc----------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 007648 419 VGKP----------HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRAT 488 (594)
Q Consensus 419 ~~~~----------~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 488 (594)
.+.+ .++++.|+..+...|++++|+.+|+.++...|.++ ..+..+....+.+++++|+..|++++
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-----~~~~~a~l~~~~~r~~dA~~~l~~a~ 162 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-----VAWMKAVVYGAAERWTDVIDQVKSAG 162 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-----HHHHHHHHHHHTTCHHHHHHHHTTGG
T ss_pred CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-----HHHHHHHHHHHcCCHHHHHHHHHHhh
Confidence 1222 58899999999999999999999999998777654 55667778889999999999999888
Q ss_pred cCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhcc--CC-chHHHHHHHHHHHHhchh
Q 007648 489 AEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR--IA-TPQIIINYALLLEVWTLL 565 (594)
Q Consensus 489 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~-~~~~~~~~~~~~~~~g~~ 565 (594)
+..++. ....+++.++.++.++|++++|+..|++++... |. .+++++++|.++.++|+.
T Consensus 163 ~~~d~~------------------~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~ 224 (282)
T 4f3v_A 163 KWPDKF------------------LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE 224 (282)
T ss_dssp GCSCHH------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH
T ss_pred ccCCcc------------------cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH
Confidence 874320 023578889999999999999999999999754 55 678999999999999999
Q ss_pred hhhhhc
Q 007648 566 HVFLLH 571 (594)
Q Consensus 566 ~~a~~~ 571 (594)
++|..+
T Consensus 225 deA~~~ 230 (282)
T 4f3v_A 225 SAAVAL 230 (282)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998743
No 153
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.14 E-value=2.2e-10 Score=93.82 Aligned_cols=106 Identities=11% Similarity=0.077 Sum_probs=77.8
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhc
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 501 (594)
...+|..+|.++...|++++|+..|+++++..|.++ .+|+.+|.++...|++++|...|+++++..|+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------- 73 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEES----KYWLMKGKALYNLERYEEAVDCYNYVINVIEDE------- 73 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT-------
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc-------
Confidence 345667777777777777777777777777777777 777777777777777777777777777777720
Q ss_pred cCChhhhHHhhccHhhHHHHHHHHHHh-CChHHHHHHHHHHHhccCCch
Q 007648 502 DGNEPVQMKLHKSLRLWTFYVDLEESL-GNLESTRAVYERILDLRIATP 549 (594)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~~~P~~~ 549 (594)
.++.+|..++.++... |++++|++.+++++...|.++
T Consensus 74 -----------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 74 -----------YNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp -----------TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred -----------chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 0356777777777777 777777777777777777654
No 154
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.14 E-value=1.2e-09 Score=108.06 Aligned_cols=159 Identities=12% Similarity=0.130 Sum_probs=140.5
Q ss_pred hhccCCCChHHHHHHHHHhc--C-CchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhc-C-CHHHHHHHHHHHHh
Q 007648 377 LLRQNPHNVEQWHRRVKIFE--G-NPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETY-K-DIANARVIFDKAVQ 451 (594)
Q Consensus 377 ~l~~~p~~~~~~~~~~~~~~--~-~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~-~-~~~~A~~~~~kal~ 451 (594)
++..+|.+..+|+.++.++. + .+++++..++.++.. .|+ +..+|..-+.+.... + ++++++..++++++
T Consensus 80 ~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~-nPK-----ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~ 153 (349)
T 3q7a_A 80 IVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ-NLK-----SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLL 153 (349)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT-TCC-----CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS
T ss_pred HHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-CCC-----cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 68999999999999988874 5 599999999999986 443 679999999988876 7 89999999999999
Q ss_pred ccCCChhhHHHHHHHHHHHHHhcCChH--------HHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHH
Q 007648 452 VNYKTVDHLASIWCEWAEMELRHKNFK--------GALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVD 523 (594)
Q Consensus 452 ~~p~~~~~~~~~~~~~~~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (594)
.+|+|. .+|...+-+..+.|.++ ++.+.++++++.+|. +...|.+.+.
T Consensus 154 ~dpkNy----~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~--------------------N~SAW~~R~~ 209 (349)
T 3q7a_A 154 PDPKNY----HTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR--------------------NNSAWGWRWY 209 (349)
T ss_dssp SCTTCH----HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT--------------------CHHHHHHHHH
T ss_pred hCCCCH----HHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC--------------------CHHHHHHHHH
Confidence 999999 99998888877777777 899999999999995 6689999999
Q ss_pred HHHHhCC-------hHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchh
Q 007648 524 LEESLGN-------LESTRAVYERILDLRIATPQIIINYALLLEVWTLL 565 (594)
Q Consensus 524 ~~~~~g~-------~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~ 565 (594)
+..++|. ++++.+.+++++.++|++..+|..+..++.+.|.-
T Consensus 210 lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 210 LRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 9888886 68999999999999999999999988888876653
No 155
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.14 E-value=1.3e-08 Score=100.22 Aligned_cols=232 Identities=12% Similarity=0.020 Sum_probs=115.4
Q ss_pred cCCh-hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCC--CCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 007648 39 EAPF-KKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLP--ITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQ 115 (594)
Q Consensus 39 ~~~~-~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~ 115 (594)
+|++ ++|...++++|..+|.+..+|..--........... .....++++...++.++..+|.+..+|..-+.++...
T Consensus 42 ~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l 121 (331)
T 3dss_A 42 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 121 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcc
Confidence 3444 355666666666666666666543322211100000 0012345566666666666666666666665555555
Q ss_pred c--cHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHHHH---HHHHhc-------
Q 007648 116 K--FITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFI---EFLVKS------- 183 (594)
Q Consensus 116 ~--~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~---~~~~~~------- 183 (594)
+ .++.+..+++++++.+|.+ ...|.--.-+....|...+++++.+.++++.+|.+..++. .++...
T Consensus 122 ~~~~~~~EL~~~~k~l~~dprN--y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~ 199 (331)
T 3dss_A 122 PEPNWARELELCARFLEADERN--FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 199 (331)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC---
T ss_pred CcccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccc
Confidence 5 2556666666666666654 4455544444444454215566666666666666554321 111111
Q ss_pred -------ccHHHHHHHHHHhhc-CcccccccccchHHHHHHHHHHHhhc-ccc-ccc------CcHHHHHHHHHhhccch
Q 007648 184 -------KLWQEAAERLASVLN-DDQFYSIKGKTKHRLWLELCDLLTTH-ATE-ISG------LNVDAIIRGGIRKFTDE 247 (594)
Q Consensus 184 -------~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~-~~~------~~~~~~~~~~~~~~p~~ 247 (594)
+.++++.+.+.+++. +|.. ...|....-++... +.. ... ......+++.++..|++
T Consensus 200 ~~~~~~~~~~~eEle~~~~ai~~~P~d--------~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 200 PQGRLPENVLLKELELVQNAFFTDPND--------QSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHSTTC--------HHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cccccchHHHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 345556666665552 2222 23453221111111 100 000 01113455666677765
Q ss_pred hHHHHHHHHHHHH-----HhccHHHHHHHHHHHHhhhcccc
Q 007648 248 VGRLWTSLADYYI-----RRELFEKARDIFEEGMMTVVTVR 283 (594)
Q Consensus 248 ~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~p~~~ 283 (594)
.|..++.... ..|..++++..+.+.+..+|...
T Consensus 272 ---~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~ 309 (331)
T 3dss_A 272 ---KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 309 (331)
T ss_dssp ---HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGH
T ss_pred ---chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchh
Confidence 4554444332 34677889999999999998865
No 156
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.13 E-value=2.2e-10 Score=113.39 Aligned_cols=163 Identities=11% Similarity=0.003 Sum_probs=127.8
Q ss_pred cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC--ChhhHHHHHHHHHHHHHh
Q 007648 396 EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK--TVDHLASIWCEWAEMELR 473 (594)
Q Consensus 396 ~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~--~~~~~~~~~~~~~~~~~~ 473 (594)
.|++++|...|++|+...+...........+..+|.++...|++++|+..|++|+.+.+. ++......+..+|.++..
T Consensus 49 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~ 128 (307)
T 2ifu_A 49 AKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP 128 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc
Confidence 389999999999999853211111113568889999999999999999999999997543 343344678889999888
Q ss_pred cCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCch----
Q 007648 474 HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP---- 549 (594)
Q Consensus 474 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~---- 549 (594)
|++++|+..|++|+...|... .. ......+..++.++.+.|++++|+..|++++++.|+++
T Consensus 129 -g~~~~A~~~~~~Al~~~~~~~--------~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 193 (307)
T 2ifu_A 129 -LDLSKAVHLYQQAAAVFENEE--------RL------RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT 193 (307)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTT--------CH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -CCHHHHHHHHHHHHHHHHhCC--------Ch------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH
Confidence 999999999999999887410 00 01246788999999999999999999999999877654
Q ss_pred --HHHHHHHHHHHHhchhhhhhhccc
Q 007648 550 --QIIINYALLLEVWTLLHVFLLHVP 573 (594)
Q Consensus 550 --~~~~~~~~~~~~~g~~~~a~~~~~ 573 (594)
.++.+++.++...|++++|+.++.
T Consensus 194 ~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 194 CYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 477888899999999999985543
No 157
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.13 E-value=7.5e-11 Score=98.42 Aligned_cols=96 Identities=14% Similarity=0.089 Sum_probs=77.5
Q ss_pred cCCHHHHHHHHHHHHhc---cCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhh
Q 007648 436 YKDIANARVIFDKAVQV---NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLH 512 (594)
Q Consensus 436 ~~~~~~A~~~~~kal~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 512 (594)
.|++++|+..|+++++. +|+++ .+|+.+|.++...|++++|+..|+++++..|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------------------- 59 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLA----ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN------------------- 59 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------------
Confidence 57888888999999888 56666 78888888888889999999999999988885
Q ss_pred ccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHH
Q 007648 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINY 555 (594)
Q Consensus 513 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~ 555 (594)
++.++..++.++...|++++|+..++++++..|+++.+....
T Consensus 60 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 101 (117)
T 3k9i_A 60 -HQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYK 101 (117)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTH
T ss_pred -chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 567888888888888999999999999999888888766433
No 158
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.12 E-value=7.4e-10 Score=108.03 Aligned_cols=104 Identities=14% Similarity=0.072 Sum_probs=98.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhc
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 501 (594)
.+..+..+|..+...|++++|+..|+++++.+|+++ .+|..+|.++.+.|++++|...++++++.+|+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------- 70 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA----VYYTNRALCYLKMQQPEQALADCRRALELDGQ-------- 70 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT--------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--------
Confidence 467889999999999999999999999999999999 99999999999999999999999999999995
Q ss_pred cCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCch
Q 007648 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP 549 (594)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~ 549 (594)
++.++..++.++...|++++|...|+++++++|+++
T Consensus 71 ------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 71 ------------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 668899999999999999999999999999999763
No 159
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.11 E-value=1e-10 Score=117.49 Aligned_cols=146 Identities=9% Similarity=-0.000 Sum_probs=87.1
Q ss_pred CCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCC-----------chHHHHHHHHHHHhcCCHHHHHHHHH
Q 007648 381 NPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGK-----------PHTLWVAFAKLYETYKDIANARVIFD 447 (594)
Q Consensus 381 ~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~ 447 (594)
.|..+..|..++..+. |++++|+..|++|+...|....... ...+|+++|.++...|++++|+..|+
T Consensus 175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~ 254 (338)
T 2if4_A 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN 254 (338)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3456677888888774 7999999999999986432100000 01389999999999999999999999
Q ss_pred HHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHH-HH
Q 007648 448 KAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDL-EE 526 (594)
Q Consensus 448 kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 526 (594)
++++.+|+++ .+|+.+|..+...|++++|+..|++++++.|+ ++.++..++.+ ..
T Consensus 255 ~al~~~p~~~----~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~--------------------~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 255 IVLTEEEKNP----KALFRRGKAKAELGQMDSARDDFRKAQKYAPD--------------------DKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHCTTCH----HHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred HHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--------------------CHHHHHHHHHHHHH
Confidence 9999999999 99999999999999999999999999999995 44666666666 33
Q ss_pred HhCChHHHHHHHHHHHhccCCchH
Q 007648 527 SLGNLESTRAVYERILDLRIATPQ 550 (594)
Q Consensus 527 ~~g~~~~A~~~~~~al~~~P~~~~ 550 (594)
..+..+++++.|.+++...|+++.
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCC
Confidence 456788899999999999998864
No 160
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.10 E-value=1.5e-10 Score=100.10 Aligned_cols=100 Identities=10% Similarity=0.077 Sum_probs=87.9
Q ss_pred hcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCCh----------HHHHHHHHHHhcCCchhHhhhhhccCC
Q 007648 435 TYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNF----------KGALELMRRATAEPSVEVRRRVAADGN 504 (594)
Q Consensus 435 ~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~~~~ 504 (594)
+.+.+++|+..++++++.+|+++ ..|+.||..+...+++ ++|+..|++|++++|+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~a----ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~----------- 78 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDA----DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK----------- 78 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-----------
T ss_pred HHhHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-----------
Confidence 56778999999999999999999 9999999988887764 5999999999999995
Q ss_pred hhhhHHhhccHhhHHHHHHHHHHhC-----------ChHHHHHHHHHHHhccCCchHHHHHHHHH
Q 007648 505 EPVQMKLHKSLRLWTFYVDLEESLG-----------NLESTRAVYERILDLRIATPQIIINYALL 558 (594)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~g-----------~~~~A~~~~~~al~~~P~~~~~~~~~~~~ 558 (594)
+...|..+|.++..+| ++++|.++|++|++++|+++..+..+..+
T Consensus 79 ---------~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 79 ---------KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ---------cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 5688899999998875 89999999999999999998777665443
No 161
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.09 E-value=7.7e-10 Score=108.58 Aligned_cols=174 Identities=7% Similarity=-0.054 Sum_probs=129.9
Q ss_pred CChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC--hh
Q 007648 383 HNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKT--VD 458 (594)
Q Consensus 383 ~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~--~~ 458 (594)
.....+...+..+ .|++++|...|++++...+...........+..+|.++...|++++|+..|++|+...+.. +.
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 152 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence 3444454554443 4899999999999998533311111123445667888888999999999999999865443 22
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHhcC---CchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHH
Q 007648 459 HLASIWCEWAEMELRHKNFKGALELMRRATAE---PSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTR 535 (594)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 535 (594)
....++..+|.++...|++++|...|++|++. .|++. .....++...|.++...|++++|.
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~----------------~~~~~~~~nlg~~y~~~~~y~~Al 216 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE----------------EFDVKVRYNHAKALYLDSRYEESL 216 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH----------------HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc----------------cchHHHHHhHHHHHHHHhhHHHHH
Confidence 23468889999999999999999999999944 33210 002367889999999999999999
Q ss_pred HHHHHHHhccCC------chHHHHHHHHHHHHhchhhhh-hhcc
Q 007648 536 AVYERILDLRIA------TPQIIINYALLLEVWTLLHVF-LLHV 572 (594)
Q Consensus 536 ~~~~~al~~~P~------~~~~~~~~~~~~~~~g~~~~a-~~~~ 572 (594)
..++++++..++ .+.++.++|.++.+.|++++| ..++
T Consensus 217 ~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~ 260 (293)
T 2qfc_A 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAY 260 (293)
T ss_dssp HHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 999999997654 267899999999999999999 4433
No 162
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.08 E-value=2.4e-09 Score=88.28 Aligned_cols=100 Identities=16% Similarity=0.082 Sum_probs=89.7
Q ss_pred ChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHH
Q 007648 384 NVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLA 461 (594)
Q Consensus 384 ~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~ 461 (594)
.+..|+.++..+ .|++++|...|++++...|. .+.+|..+|.++...|++++|+..++++++..|+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---- 72 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG---- 72 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH----
Confidence 356677777766 48999999999999986433 578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcCCch
Q 007648 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSV 493 (594)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 493 (594)
.+|..++.++...|++++|+..++++++..|+
T Consensus 73 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 73 KGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 89999999999999999999999999999995
No 163
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.08 E-value=2e-08 Score=93.27 Aligned_cols=125 Identities=9% Similarity=-0.073 Sum_probs=93.1
Q ss_pred CchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHh----cCCHHHHHHHHHHHHhccCC--ChhhHHHHHHHHHHHH
Q 007648 398 NPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYET----YKDIANARVIFDKAVQVNYK--TVDHLASIWCEWAEME 471 (594)
Q Consensus 398 ~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~kal~~~p~--~~~~~~~~~~~~~~~~ 471 (594)
++++|...|++|+.. . .+.++..+|.++.. .+++++|+..|++|++..|. ++ ..++.++.++
T Consensus 68 ~~~~A~~~~~~A~~~--g------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~----~a~~~Lg~~y 135 (212)
T 3rjv_A 68 DYPQARQLAEKAVEA--G------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAV----DAQMLLGLIY 135 (212)
T ss_dssp CHHHHHHHHHHHHHT--T------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHH----HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--C------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchH----HHHHHHHHHH
Confidence 567788888888763 1 46788888888876 78899999999999988773 46 7788888888
Q ss_pred Hh----cCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHh-C-----ChHHHHHHHHHH
Q 007648 472 LR----HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESL-G-----NLESTRAVYERI 541 (594)
Q Consensus 472 ~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g-----~~~~A~~~~~~a 541 (594)
.. .+++++|..+|++|++..+ ++..+..++.++..- | ++++|+.+|++|
T Consensus 136 ~~g~g~~~d~~~A~~~~~~A~~~~~---------------------~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A 194 (212)
T 3rjv_A 136 ASGVHGPEDDVKASEYFKGSSSLSR---------------------TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS 194 (212)
T ss_dssp HHTSSSSCCHHHHHHHHHHHHHTSC---------------------TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHcCC---------------------CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 77 6789999999999988722 234566677776543 3 889999999999
Q ss_pred HhccCCchHHHHHHHH
Q 007648 542 LDLRIATPQIIINYAL 557 (594)
Q Consensus 542 l~~~P~~~~~~~~~~~ 557 (594)
++.. ++.+...++.
T Consensus 195 ~~~g--~~~A~~~l~~ 208 (212)
T 3rjv_A 195 CLEG--FDTGCEEFDR 208 (212)
T ss_dssp HHHT--CHHHHHHHHH
T ss_pred HHcC--CHHHHHHHHH
Confidence 8864 4444444443
No 164
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.08 E-value=2.3e-09 Score=89.32 Aligned_cols=119 Identities=16% Similarity=0.282 Sum_probs=100.1
Q ss_pred CCCC-hHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh
Q 007648 381 NPHN-VEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTV 457 (594)
Q Consensus 381 ~p~~-~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~ 457 (594)
+|.+ ...|..++..+. |++++|...|++++...|. ...+|..+|.++...|++++|+..+++++...|.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 77 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH
Confidence 4555 778888887764 8999999999999986433 578999999999999999999999999999999998
Q ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhC
Q 007648 458 DHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLG 529 (594)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 529 (594)
.+|..++.++...|++++|...|+++++..|+ ++..+..++.++...|
T Consensus 78 ----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--------------------~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 78 ----EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--------------------NAEAKQNLGNAKQKQG 125 (125)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------CHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--------------------cHHHHHHHHHHHHhcc
Confidence 88999999999999999999999999999995 4566666666665543
No 165
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.08 E-value=4.5e-09 Score=103.07 Aligned_cols=135 Identities=10% Similarity=0.017 Sum_probs=105.5
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH---hccCCChhhHHHHHHHHHHHHHh
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAV---QVNYKTVDHLASIWCEWAEMELR 473 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal---~~~p~~~~~~~~~~~~~~~~~~~ 473 (594)
|++++|...|++|+...+..........++..+|.++...|++++|...|++|+ +..|+++.....+++.+|.++..
T Consensus 129 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 2qfc_A 129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp SCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH
Confidence 688899999999997533321111135689999999999999999999999999 44666553333688999999999
Q ss_pred cCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHH-HHHHHHHHhcc
Q 007648 474 HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLEST-RAVYERILDLR 545 (594)
Q Consensus 474 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A-~~~~~~al~~~ 545 (594)
.|++++|...+++|++..++.. . ...-..++...|.++.++|++++| ...|++|+.+.
T Consensus 209 ~~~y~~Al~~~~kal~~~~~~~--------~------~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 209 DSRYEESLYQVNKAIEISCRIN--------S------MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTT--------B------CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHhcC--------c------HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 9999999999999998865300 0 001146789999999999999999 88899999854
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.08 E-value=5.7e-10 Score=99.15 Aligned_cols=105 Identities=16% Similarity=0.136 Sum_probs=95.7
Q ss_pred ccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC
Q 007648 379 RQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKT 456 (594)
Q Consensus 379 ~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~ 456 (594)
..+|.++..|+.++..+. |++++|+..|++++... |. ...+|..+|.++...|++++|+..|+++++++|++
T Consensus 5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 78 (164)
T 3sz7_A 5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PA-----NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY 78 (164)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-Cc-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 446677888999888774 89999999999999964 42 57899999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCch
Q 007648 457 VDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSV 493 (594)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 493 (594)
+ .+|+.+|.++...|++++|+..|++++++.|+
T Consensus 79 ~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 79 S----KAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp H----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred H----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 9 99999999999999999999999999999995
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.07 E-value=1.1e-09 Score=93.66 Aligned_cols=104 Identities=12% Similarity=0.135 Sum_probs=94.5
Q ss_pred cCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh
Q 007648 380 QNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTV 457 (594)
Q Consensus 380 ~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~ 457 (594)
.+|.++..|+.+|..+. |++++|...|++++... |. .+.+|..+|.++...|++++|+..++++++.+|+++
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 77 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PL-----VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 77 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cC-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH
Confidence 46788999999988774 89999999999999964 42 578999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCch
Q 007648 458 DHLASIWCEWAEMELRHKNFKGALELMRRATAEPSV 493 (594)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 493 (594)
.+|+.+|.++...|++++|+..|+++++..|+
T Consensus 78 ----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 78 ----KAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 99999999999999999999999999999985
No 168
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.06 E-value=2.4e-09 Score=102.53 Aligned_cols=143 Identities=11% Similarity=-0.025 Sum_probs=114.9
Q ss_pred HHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHH
Q 007648 386 EQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASI 463 (594)
Q Consensus 386 ~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~ 463 (594)
+++..++.++ .|++++|...|+.++.. .|. .. .++..|.++.+.++++.|+..|+++.... ++..-..+
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~-~p~-----~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~~~~~a 173 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPVA-GSE-----HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLAGAA 173 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCCT-TCH-----HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCc-----hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC--CcccHHHH
Confidence 4455576666 48999999999887763 342 34 78888999999999999999999887643 22112358
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCC--chhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHH
Q 007648 464 WCEWAEMELRHKNFKGALELMRRATAEP--SVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (594)
Q Consensus 464 ~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (594)
++.+|..+.+.|++++|+..|++++.-. |. ..+..++..+.++.++|+.++|+.+|+++
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~-------------------~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEA-------------------CARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTT-------------------THHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCcc-------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999998654 52 13467889999999999999999999999
Q ss_pred HhccCCchHHHHHHHH
Q 007648 542 LDLRIATPQIIINYAL 557 (594)
Q Consensus 542 l~~~P~~~~~~~~~~~ 557 (594)
+..+|+ +.++..+..
T Consensus 235 ~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 235 QTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHSCC-HHHHHHHHC
T ss_pred HhcCCc-HHHHHHHhC
Confidence 999999 888876643
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.06 E-value=9.5e-10 Score=92.31 Aligned_cols=98 Identities=13% Similarity=0.134 Sum_probs=84.9
Q ss_pred HHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHH
Q 007648 386 EQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASI 463 (594)
Q Consensus 386 ~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~ 463 (594)
..|+.+|..+ .|++++|+..|++++.. .|. .+.+|+.+|.++...|++++|+..|++|++.+|+++ .+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~P~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~----~~ 87 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQK-EPE-----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI----AV 87 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH-STT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HH
Confidence 3456666655 48999999999999996 443 689999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCCch
Q 007648 464 WCEWAEMELRHKNFKGALELMRRATAEPSV 493 (594)
Q Consensus 464 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 493 (594)
|+.+|.++...|++++|+..|+++++.+|+
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 88 HAALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 999999999999999999999999999995
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.06 E-value=1.1e-09 Score=89.61 Aligned_cols=103 Identities=17% Similarity=0.113 Sum_probs=94.3
Q ss_pred CCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC--C
Q 007648 381 NPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK--T 456 (594)
Q Consensus 381 ~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~--~ 456 (594)
+|++...|..++..+. |++++|...|++++...|. ...+|..+|.++...|++++|+..|+++++..|+ +
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 75 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN 75 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch
Confidence 6888899998888774 8999999999999986433 5789999999999999999999999999999999 8
Q ss_pred hhhHHHHHHHHHHHHHhc-CChHHHHHHHHHHhcCCch
Q 007648 457 VDHLASIWCEWAEMELRH-KNFKGALELMRRATAEPSV 493 (594)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~ 493 (594)
+ .+|..++.++... |++++|++.+++++...|+
T Consensus 76 ~----~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 76 K----DVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp H----HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred H----HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 8 8999999999999 9999999999999999984
No 171
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.03 E-value=5.5e-09 Score=102.43 Aligned_cols=164 Identities=8% Similarity=-0.045 Sum_probs=122.4
Q ss_pred cCCchhHHHHHHHHHhccCCCccc-CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChh--hHHHHHHHHHHHHH
Q 007648 396 EGNPTKQILTYTEAVRTVDPMKAV-GKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVD--HLASIWCEWAEMEL 472 (594)
Q Consensus 396 ~~~~~~a~~~y~~Ai~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~--~~~~~~~~~~~~~~ 472 (594)
.+++++|...|++++.. ++.... ......+..+|.++...|+++.|+..|++|+...+...+ ....++..+|.++.
T Consensus 88 ~~~y~~a~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 166 (293)
T 3u3w_A 88 QKRYKEIYNKVWNELKK-EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA 166 (293)
T ss_dssp TTCHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHhcc-ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 48999999999999984 332110 001122334788888889999999999999996544332 22347888999999
Q ss_pred hcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCc----
Q 007648 473 RHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT---- 548 (594)
Q Consensus 473 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~---- 548 (594)
..|++++|...|+++++..... .+.. .....++..++.++.+.|++++|...+++|+++.+..
T Consensus 167 ~~g~~~~A~~~~~~al~~~~~~-------~~~~------~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 167 ENGYLKKGIDLFEQILKQLEAL-------HDNE------EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHS-------SCCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred HcCCHHHHHHHHHHHHHHHHhc-------ccch------hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence 9999999999999999532210 0000 0134678999999999999999999999999987654
Q ss_pred --hHHHHHHHHHHHHhc-hhhhhhhccc
Q 007648 549 --PQIIINYALLLEVWT-LLHVFLLHVP 573 (594)
Q Consensus 549 --~~~~~~~~~~~~~~g-~~~~a~~~~~ 573 (594)
+.++.++|.++.+.| ++++|+.++.
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~ 261 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 789999999999999 5688886543
No 172
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.02 E-value=1.6e-09 Score=91.75 Aligned_cols=103 Identities=18% Similarity=0.157 Sum_probs=88.3
Q ss_pred hHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhh---
Q 007648 385 VEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDH--- 459 (594)
Q Consensus 385 ~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~--- 459 (594)
+.++..+|..+ .|++++|+..|++|+.. .|. .+.+|.++|.++...|++++|+..+++|++++|+++..
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-~p~-----~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL-DPS-----NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC-----CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence 44566777766 48999999999999996 453 57899999999999999999999999999998877532
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCch
Q 007648 460 LASIWCEWAEMELRHKNFKGALELMRRATAEPSV 493 (594)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 493 (594)
+..++..+|.++...|++++|++.|+++++..|+
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 3357888999999999999999999999998884
No 173
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.02 E-value=1.4e-09 Score=99.88 Aligned_cols=137 Identities=14% Similarity=0.132 Sum_probs=106.2
Q ss_pred CChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCC----------chHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007648 383 HNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGK----------PHTLWVAFAKLYETYKDIANARVIFDKAV 450 (594)
Q Consensus 383 ~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~----------~~~~~~~~a~~~~~~~~~~~A~~~~~kal 450 (594)
..+..|..+|..+ .|++++|+..|++|+...|....... ...+|..+|.++...|++++|+..+++++
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4456677777766 48999999999999986443210000 02799999999999999999999999999
Q ss_pred hccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCC
Q 007648 451 QVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN 530 (594)
Q Consensus 451 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 530 (594)
+.+|+++ .+++.+|.++...|++++|+..|+++++..|+ ++.++..++.++...|+
T Consensus 116 ~~~p~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------------------~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 116 KIDKNNV----KALYKLGVANMYFGFLEEAKENLYKAASLNPN--------------------NLDIRNSYELCVNKLKE 171 (198)
T ss_dssp HHSTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--------------------CHHHHHHHHHHHHHHHH
T ss_pred HhCcccH----HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--------------------cHHHHHHHHHHHHHHHH
Confidence 9999999 99999999999999999999999999999995 56788888888888887
Q ss_pred hHHHH-HHHHHHHh
Q 007648 531 LESTR-AVYERILD 543 (594)
Q Consensus 531 ~~~A~-~~~~~al~ 543 (594)
.+++. ..|.+.+.
T Consensus 172 ~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 172 ARKKDKLTFGGMFD 185 (198)
T ss_dssp HHC-----------
T ss_pred HHHHHHHHHHHHhc
Confidence 77766 44555443
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.00 E-value=1.2e-10 Score=122.50 Aligned_cols=122 Identities=13% Similarity=0.062 Sum_probs=104.4
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCC
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~ 476 (594)
|++++|+..|++|++. .|. ...+|..+|.++...|++++|+..+++|++.+|+++ .+|+.+|..+...|+
T Consensus 20 g~~~~A~~~~~~Al~~-~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~----~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 20 KDYENAIKFYSQAIEL-NPS-----NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI----KGYYRRAASNMALGK 89 (477)
T ss_dssp TCHHHHHHHHHHHHHH-CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH----HHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHh-CCc-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCC
Confidence 7899999999999996 443 589999999999999999999999999999999999 999999999999999
Q ss_pred hHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHH--HHHhCChHHHHHHHH-----------HHHh
Q 007648 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDL--EESLGNLESTRAVYE-----------RILD 543 (594)
Q Consensus 477 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~A~~~~~-----------~al~ 543 (594)
+++|.+.|+++++..|+ ++..+..++.+ +.+.|++++|++.++ +++.
T Consensus 90 ~~eA~~~~~~al~~~p~--------------------~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~ 149 (477)
T 1wao_1 90 FRAALRDYETVVKVKPH--------------------DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMT 149 (477)
T ss_dssp HHHHHHHHHHHHHHSTT--------------------CTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCC
T ss_pred HHHHHHHHHHHHHhCCC--------------------CHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcc
Confidence 99999999999999995 34556666666 777899999999999 8998
Q ss_pred ccCCc
Q 007648 544 LRIAT 548 (594)
Q Consensus 544 ~~P~~ 548 (594)
+.|+.
T Consensus 150 ~~~~~ 154 (477)
T 1wao_1 150 IEDEY 154 (477)
T ss_dssp CCTTC
T ss_pred ccccc
Confidence 88764
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=2.8e-09 Score=92.19 Aligned_cols=121 Identities=10% Similarity=0.024 Sum_probs=102.5
Q ss_pred HHHhhCCCCHHHHHHHHHHH-HcCChhHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHH
Q 007648 18 EELLRNPFSLKLWWRYLVAK-REAPFKKRFVIYERALKALPGS---YKLWHAYLIERLSIVKNLPITHPEYETLNNTFER 93 (594)
Q Consensus 18 ~~l~~~P~~~~~w~~~~~~~-~~~~~~~a~~~~e~al~~~P~s---~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 93 (594)
.....+|.+...|...+... ..|+++.|...|+++++..|.+ ..+|..++... ...+++++|+..|++
T Consensus 19 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~--------~~~~~~~~A~~~~~~ 90 (148)
T 2dba_A 19 RPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACH--------LKLEDYDKAETEASK 90 (148)
T ss_dssp CCCCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH--------HHTTCHHHHHHHHHH
T ss_pred cCCccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHH--------HHHccHHHHHHHHHH
Confidence 34456788999999888855 4899999999999999999987 78887777665 345889999999999
Q ss_pred HHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 007648 94 ALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFV 148 (594)
Q Consensus 94 al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~ 148 (594)
++..+|.++.+|..++.++...|++++|...|++++...|.+ ..+|..+..+.
T Consensus 91 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~ 143 (148)
T 2dba_A 91 AIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN--KVFQEALRNIS 143 (148)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC--HHHHHHHHHHH
T ss_pred HHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHH
Confidence 999999999999999999999999999999999999999976 67777666554
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.00 E-value=1.6e-09 Score=113.35 Aligned_cols=143 Identities=10% Similarity=0.088 Sum_probs=115.9
Q ss_pred hhccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcc---------cCCchHHHHHHHHHHHhcCCHHHHHHH
Q 007648 377 LLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKA---------VGKPHTLWVAFAKLYETYKDIANARVI 445 (594)
Q Consensus 377 ~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~---------~~~~~~~~~~~a~~~~~~~~~~~A~~~ 445 (594)
++..+|.++..|..+|..+. |++++|+..|++|+...|.... ......+|.++|.++.+.|++++|+..
T Consensus 260 ~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 339 (457)
T 1kt0_A 260 DTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVEC 339 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 35567788889999988774 8999999999999996443200 000158999999999999999999999
Q ss_pred HHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHH
Q 007648 446 FDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLE 525 (594)
Q Consensus 446 ~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (594)
|++|++++|+++ .+|+.+|.++...|++++|+..|++|++++|+ +..++..++.++
T Consensus 340 ~~~al~~~p~~~----~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~--------------------~~~a~~~l~~~~ 395 (457)
T 1kt0_A 340 CDKALGLDSANE----KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ--------------------NKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHSTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------------------------CHHHHHHHHH
T ss_pred HHHHHhcCCccH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------------------CHHHHHHHHHHH
Confidence 999999999999 99999999999999999999999999999995 557888888999
Q ss_pred HHhCChHHHH-HHHHHHHh
Q 007648 526 ESLGNLESTR-AVYERILD 543 (594)
Q Consensus 526 ~~~g~~~~A~-~~~~~al~ 543 (594)
.++|+.+++. ..|.+++.
T Consensus 396 ~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 396 KKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8889888765 45555544
No 177
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.97 E-value=7.3e-10 Score=111.14 Aligned_cols=131 Identities=11% Similarity=-0.009 Sum_probs=90.9
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChh-------------hHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVD-------------HLASIWCEWAEMELRHKNFKGALELMRRAT 488 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~-------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 488 (594)
....|...|..+...|++++|+..|++|+...|+++. ....+|+.++.++.+.|++++|+..+++++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3567888899999999999999999999999988751 001288999999999999999999999999
Q ss_pred cCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHH-hchhhh
Q 007648 489 AEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEV-WTLLHV 567 (594)
Q Consensus 489 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~-~g~~~~ 567 (594)
+.+|+ ++..|..++.++..+|++++|+..|+++++++|+++.++.+++.+... .+..+.
T Consensus 258 ~~~p~--------------------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 258 TEEEK--------------------NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHCTT--------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HhCCC--------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99995 678899999999999999999999999999999999999999988443 444555
Q ss_pred hhhcc
Q 007648 568 FLLHV 572 (594)
Q Consensus 568 a~~~~ 572 (594)
+...+
T Consensus 318 a~~~~ 322 (338)
T 2if4_A 318 QKEMY 322 (338)
T ss_dssp -----
T ss_pred HHHHH
Confidence 44433
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.96 E-value=3.9e-09 Score=93.43 Aligned_cols=105 Identities=13% Similarity=0.151 Sum_probs=89.1
Q ss_pred hHHHHHHHHHh--cCCchhHHHHHHHHHhcc-------CCCcc-----cCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007648 385 VEQWHRRVKIF--EGNPTKQILTYTEAVRTV-------DPMKA-----VGKPHTLWVAFAKLYETYKDIANARVIFDKAV 450 (594)
Q Consensus 385 ~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~-------~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal 450 (594)
+..+...|..+ .|++++|+..|++|+..+ .|... ......+|.++|.++...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 45566666665 389999999999999862 11100 11256899999999999999999999999999
Q ss_pred hccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCch
Q 007648 451 QVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSV 493 (594)
Q Consensus 451 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 493 (594)
+.+|+++ .+|+.+|.++...|++++|+..|+++++++|+
T Consensus 91 ~~~p~~~----~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 91 KREETNE----KALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHSTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred hcCCcch----HHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 9999999 99999999999999999999999999999996
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.94 E-value=4.2e-09 Score=88.66 Aligned_cols=105 Identities=14% Similarity=0.171 Sum_probs=88.9
Q ss_pred CChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhh-
Q 007648 383 HNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDH- 459 (594)
Q Consensus 383 ~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~- 459 (594)
..+..|+.+|..+ .|++++|...|++++...|. .+.+|..+|.++...|++++|+..+++++...|+++..
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 75 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY 75 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhH
Confidence 3456777777776 38999999999999986433 57899999999999999999999999999998776111
Q ss_pred --HHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCch
Q 007648 460 --LASIWCEWAEMELRHKNFKGALELMRRATAEPSV 493 (594)
Q Consensus 460 --~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 493 (594)
...+|+.+|.++...|++++|...|+++++..|+
T Consensus 76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 1288999999999999999999999999999883
No 180
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.94 E-value=3.4e-09 Score=91.89 Aligned_cols=105 Identities=12% Similarity=-0.026 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHH
Q 007648 461 ASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540 (594)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 540 (594)
...+...|..+.+.|++++|...|++|++.+|+.. .... ......+...|...+.++.++|++++|+..|++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~-------~~~a-~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~k 82 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMP-------PEEA-FDHAGFDAFCHAGLAEALAGLRSFDEALHSADK 82 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC-------TTSC-CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCc-------chhh-hhhccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 36788889988999999999999999999999511 0000 000001345899999999999999999999999
Q ss_pred HHhc-------cCCchHHH----HHHHHHHHHhchhhhhhhccc
Q 007648 541 ILDL-------RIATPQII----INYALLLEVWTLLHVFLLHVP 573 (594)
Q Consensus 541 al~~-------~P~~~~~~----~~~~~~~~~~g~~~~a~~~~~ 573 (594)
||++ +|+++.+| .+.|.++...|++++|+.+|.
T Consensus 83 AL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~ 126 (159)
T 2hr2_A 83 ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFK 126 (159)
T ss_dssp HHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHH
Confidence 9999 99999999 999999999999999997764
No 181
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.93 E-value=1e-08 Score=93.95 Aligned_cols=155 Identities=10% Similarity=0.014 Sum_probs=119.0
Q ss_pred CC-CChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---cC
Q 007648 381 NP-HNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQV---NY 454 (594)
Q Consensus 381 ~p-~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~---~p 454 (594)
+| ....++..++.++. |++++|+..|++|+..............++..+|.++...|++++|+..+++++.. .|
T Consensus 21 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 100 (203)
T 3gw4_A 21 HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP 100 (203)
T ss_dssp STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 55 56778888888764 89999999999999843221111124678899999999999999999999999997 55
Q ss_pred CChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHH
Q 007648 455 KTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLEST 534 (594)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 534 (594)
+++.....++..+|.++...|++++|+..+++++...+... .. ......+..++.++...|++++|
T Consensus 101 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~------~~~~~~~~~la~~~~~~g~~~~A 166 (203)
T 3gw4_A 101 EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD--------DQ------VAIACAFRGLGDLAQQEKNLLEA 166 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--------CH------HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc--------ch------HHHHHHHHHHHHHHHHCcCHHHH
Confidence 45434456788999999999999999999999997754200 00 01134568889999999999999
Q ss_pred HHHHHHHHhccCCch
Q 007648 535 RAVYERILDLRIATP 549 (594)
Q Consensus 535 ~~~~~~al~~~P~~~ 549 (594)
+..+++++++.....
T Consensus 167 ~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 167 QQHWLRARDIFAELE 181 (203)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999765443
No 182
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.92 E-value=9.5e-09 Score=94.15 Aligned_cols=158 Identities=11% Similarity=-0.024 Sum_probs=117.2
Q ss_pred cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC--ChhhHHHHHHHHHHHHHh
Q 007648 396 EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK--TVDHLASIWCEWAEMELR 473 (594)
Q Consensus 396 ~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~--~~~~~~~~~~~~~~~~~~ 473 (594)
.|++++|...++.... .++ ....++..+|.++...|++++|+..+++++..... ++.....++..+|.++..
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPA-----TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM 78 (203)
T ss_dssp --CHHHHHHHHHHHHT-STT-----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcC-ChH-----HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 4788888885554433 222 25788999999999999999999999999984221 222333788899999999
Q ss_pred cCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCC--ch--
Q 007648 474 HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA--TP-- 549 (594)
Q Consensus 474 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~--~~-- 549 (594)
.|++++|...+++++...+.. ++. .......+...+.++...|++++|...++++++..+. ++
T Consensus 79 ~g~~~~A~~~~~~al~~~~~~--------~~~-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 145 (203)
T 3gw4_A 79 AGNWDAARRCFLEERELLASL--------PED-----PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVA 145 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHS--------CCC-----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHc--------Ccc-----HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHH
Confidence 999999999999999873210 000 0012356788899999999999999999999986432 22
Q ss_pred --HHHHHHHHHHHHhchhhhhhhcc
Q 007648 550 --QIIINYALLLEVWTLLHVFLLHV 572 (594)
Q Consensus 550 --~~~~~~~~~~~~~g~~~~a~~~~ 572 (594)
.++.+++.++...|++++|+.++
T Consensus 146 ~~~~~~~la~~~~~~g~~~~A~~~~ 170 (203)
T 3gw4_A 146 IACAFRGLGDLAQQEKNLLEAQQHW 170 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 34578999999999999997543
No 183
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.91 E-value=1e-08 Score=84.89 Aligned_cols=100 Identities=13% Similarity=0.162 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHH
Q 007648 441 NARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTF 520 (594)
Q Consensus 441 ~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (594)
.|+..|+++++.+|+++ .+|+.+|.++...|++++|+..|+++++.+|+ ++..|..
T Consensus 3 ~a~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------------------~~~~~~~ 58 (115)
T 2kat_A 3 AITERLEAMLAQGTDNM----LLRFTLGKTYAEHEQFDAALPHLRAALDFDPT--------------------YSVAWKW 58 (115)
T ss_dssp CHHHHHHHHHTTTCCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------CHHHHHH
T ss_pred HHHHHHHHHHHhCCCcH----HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC--------------------cHHHHHH
Confidence 45667777777777776 67777777777777777777777777777773 4566677
Q ss_pred HHHHHHHhCChHHHHHHHHHHHhccCCch--HHHHHHHHHHHHhch
Q 007648 521 YVDLEESLGNLESTRAVYERILDLRIATP--QIIINYALLLEVWTL 564 (594)
Q Consensus 521 ~~~~~~~~g~~~~A~~~~~~al~~~P~~~--~~~~~~~~~~~~~g~ 564 (594)
++.++...|++++|+..|++++++.|.++ .....+...+...|.
T Consensus 59 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 59 LGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhcc
Confidence 77777777777777777777777766433 344445555544443
No 184
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.91 E-value=1.3e-08 Score=109.09 Aligned_cols=156 Identities=13% Similarity=0.167 Sum_probs=136.4
Q ss_pred chhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhccCCChhhHHHHHHHHH
Q 007648 399 PTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKD----------IANARVIFDKAVQVNYKTVDHLASIWCEWA 468 (594)
Q Consensus 399 ~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~kal~~~p~~~~~~~~~~~~~~ 468 (594)
.++|+..+++++.. .|+ ...+|..-+.+....|+ ++++...++++++.+|++. .+|...+
T Consensus 45 ~eeal~~~~~~l~~-nP~-----~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y----~aW~hR~ 114 (567)
T 1dce_A 45 DESVLELTSQILGA-NPD-----FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY----GTWHHRC 114 (567)
T ss_dssp SHHHHHHHHHHHHH-CTT-----CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH----HHHHHHH
T ss_pred CHHHHHHHHHHHHH-Cch-----hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH----HHHHHHH
Confidence 56789999999996 453 67999999999988887 9999999999999999999 9999999
Q ss_pred HHHHhcC--ChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhC-ChHHHHHHHHHHHhcc
Q 007648 469 EMELRHK--NFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLG-NLESTRAVYERILDLR 545 (594)
Q Consensus 469 ~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~ 545 (594)
-+..+.| +++++.+.++++++.+|. +...|.+.+-+..++| .++++.+.++++++.+
T Consensus 115 w~l~~l~~~~~~~el~~~~k~l~~d~~--------------------N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~ 174 (567)
T 1dce_A 115 WLLSRLPEPNWARELELCARFLEADER--------------------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 174 (567)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHCTT--------------------CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred HHHHHcccccHHHHHHHHHHHHhhccc--------------------cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC
Confidence 9998899 679999999999999994 6799999999999999 8999999999999999
Q ss_pred CCchHHHHHHHHHHHHh--------------chhh-------hhhhcccCcccchhhhhh
Q 007648 546 IATPQIIINYALLLEVW--------------TLLH-------VFLLHVPFTFSGLCMFTF 584 (594)
Q Consensus 546 P~~~~~~~~~~~~~~~~--------------g~~~-------~a~~~~~~~~~~~~~~~~ 584 (594)
|.+..+|.+.+.++.+. +.++ +|+...|-..+.|...-+
T Consensus 175 p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ 234 (567)
T 1dce_A 175 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRW 234 (567)
T ss_dssp CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHH
T ss_pred CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence 99999999999998874 3344 446778888887765433
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.90 E-value=2.6e-09 Score=88.90 Aligned_cols=88 Identities=14% Similarity=0.197 Sum_probs=78.3
Q ss_pred CCchhHHHHHHHHHhcc--CCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhc
Q 007648 397 GNPTKQILTYTEAVRTV--DPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRH 474 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~ 474 (594)
|++++|+..|++|+... +|. ...+|+.+|.++...|++++|+..|+++++.+|+++ .+++.+|.++.+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~ 74 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKD-----LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ----ALRVFYAMVLYNL 74 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCcc-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch----HHHHHHHHHHHHc
Confidence 67889999999999852 232 578999999999999999999999999999999999 9999999999999
Q ss_pred CChHHHHHHHHHHhcCCch
Q 007648 475 KNFKGALELMRRATAEPSV 493 (594)
Q Consensus 475 ~~~~~A~~~~~~al~~~p~ 493 (594)
|++++|+..|+++++..|+
T Consensus 75 g~~~~A~~~~~~al~~~p~ 93 (117)
T 3k9i_A 75 GRYEQGVELLLKIIAETSD 93 (117)
T ss_dssp TCHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999885
No 186
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.87 E-value=2.3e-08 Score=84.23 Aligned_cols=99 Identities=6% Similarity=-0.074 Sum_probs=84.7
Q ss_pred HHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC---hhhHHH
Q 007648 388 WHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKT---VDHLAS 462 (594)
Q Consensus 388 ~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~---~~~~~~ 462 (594)
++.++..+ .|++++|...|++++...|. .. ....+|+.+|.++...|++++|+..|+++++..|++ + .
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~----~ 77 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-GV--YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAA----G 77 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-ST--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHH----H
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-Cc--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccH----H
Confidence 44444444 48999999999999986433 21 134799999999999999999999999999999999 6 7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCch
Q 007648 463 IWCEWAEMELRHKNFKGALELMRRATAEPSV 493 (594)
Q Consensus 463 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 493 (594)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 78 GLLKLGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 8999999999999999999999999999996
No 187
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.87 E-value=6.4e-08 Score=94.76 Aligned_cols=166 Identities=10% Similarity=0.013 Sum_probs=121.5
Q ss_pred hHHHHHHHHHhhhhhchhhhhhhhhccCCCChHH-----HH-HHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHH
Q 007648 354 DVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQ-----WH-RRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTL 425 (594)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~-----~~-~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~ 425 (594)
....+...++++ +...|.+... |+ .++.++. +++++|+..|++|+....+.........+
T Consensus 90 ~y~~a~~~~~~~------------l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 90 RYKEIYNKVWNE------------LKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp CHHHHHHHHHHH------------HTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred hHHHHHHHHHHH------------hccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 445566667663 4444544431 32 3555554 58999999999999843332111112457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc---cCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhcc
Q 007648 426 WVAFAKLYETYKDIANARVIFDKAVQV---NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAAD 502 (594)
Q Consensus 426 ~~~~a~~~~~~~~~~~A~~~~~kal~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 502 (594)
+..+|.++...|++++|...|++|++. .|.+......+++.+|.++.+.|++++|...+++|++..+...
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~------- 230 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN------- 230 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC-------
Confidence 899999999999999999999999963 2345545557899999999999999999999999999876410
Q ss_pred CChhhhHHhhccHhhHHHHHHHHHHhCC-hHHHHHHHHHHHhcc
Q 007648 503 GNEPVQMKLHKSLRLWTFYVDLEESLGN-LESTRAVYERILDLR 545 (594)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~ 545 (594)
....-..++...|.++.++|+ +++|...|++|+.+.
T Consensus 231 -------~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 231 -------SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp -------BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred -------cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 000124788999999999995 699999999999854
No 188
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.87 E-value=1.1e-08 Score=83.74 Aligned_cols=95 Identities=7% Similarity=-0.020 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHH
Q 007648 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (594)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (594)
..|+.+|..+...|++++|...|+++++..|+ ++.+|..++.++...|++++|+..++++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~a 64 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ--------------------NPVGYSNKAMALIKLGEYTQAIQMCQQG 64 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------------------CHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 67889999999999999999999999999995 6788999999999999999999999999
Q ss_pred HhccCCc------hHHHHHHHHHHHHhchhhhhhhcccCcc
Q 007648 542 LDLRIAT------PQIIINYALLLEVWTLLHVFLLHVPFTF 576 (594)
Q Consensus 542 l~~~P~~------~~~~~~~~~~~~~~g~~~~a~~~~~~~~ 576 (594)
++++|++ +.++.+++.++...|.+++|+..+..+.
T Consensus 65 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 65 LRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 9999999 8899999999999999999987766543
No 189
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.86 E-value=1.6e-08 Score=87.44 Aligned_cols=97 Identities=16% Similarity=0.031 Sum_probs=76.0
Q ss_pred cCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcc--CCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcc
Q 007648 39 EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVK--NLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQK 116 (594)
Q Consensus 39 ~~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~ 116 (594)
.+.++.|++.|+++++.+|.+++.|..+......... .-....+.+++|+..|++|++++|+++.+|..++..+..+|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 3567899999999999999999999988876533200 00001133689999999999999999999999999999875
Q ss_pred -----------cHHHHHHHHHHHHHhCCCC
Q 007648 117 -----------FITKARRTFDRALCALPVT 135 (594)
Q Consensus 117 -----------~~~~A~~~~~ral~~~p~~ 135 (594)
++++|...|++|++++|.+
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 6777777777777777764
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.85 E-value=9.9e-09 Score=89.74 Aligned_cols=149 Identities=9% Similarity=0.054 Sum_probs=109.2
Q ss_pred HHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC--ChhhHH
Q 007648 386 EQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK--TVDHLA 461 (594)
Q Consensus 386 ~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~--~~~~~~ 461 (594)
.++..++..+ .|++++|+..|++++...+..........++..+|.++...|++++|...+++++...+. ++....
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 3455566555 488999999999999753221111112357888999999999999999999999986543 333344
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHH
Q 007648 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (594)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (594)
.++..+|.++...|++++|...++++++..+... . .......+..++.++...|++++|...++++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--------~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--------D------RIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------C------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc--------c------hHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6788889888899999999999999998754210 0 0012456788888999999999999999999
Q ss_pred HhccCCc
Q 007648 542 LDLRIAT 548 (594)
Q Consensus 542 l~~~P~~ 548 (594)
+++....
T Consensus 156 ~~~~~~~ 162 (164)
T 3ro3_A 156 LEISREV 162 (164)
T ss_dssp HHHHTTC
T ss_pred HHHHHHh
Confidence 9876543
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.83 E-value=2.5e-08 Score=87.10 Aligned_cols=138 Identities=5% Similarity=-0.056 Sum_probs=110.6
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC--ChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhh
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK--TVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRV 499 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 499 (594)
...++..+|.++...|++++|+..++++++..|. ++.....++..+|.++...|++++|...+++++...+...
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~---- 83 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK---- 83 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC----
Confidence 3567889999999999999999999999997553 3334445788899999999999999999999998866310
Q ss_pred hccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCC------chHHHHHHHHHHHHhchhhhhhhccc
Q 007648 500 AADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA------TPQIIINYALLLEVWTLLHVFLLHVP 573 (594)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~------~~~~~~~~~~~~~~~g~~~~a~~~~~ 573 (594)
.. ......+..++.++...|++++|...++++++..+. .+.++.+++.++...|++++|+.++.
T Consensus 84 ----~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 84 ----DR------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp ----CH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ----Cc------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 00 012456788899999999999999999999987432 24577899999999999999986543
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.82 E-value=2e-08 Score=101.83 Aligned_cols=128 Identities=13% Similarity=0.069 Sum_probs=105.9
Q ss_pred hHHHHHHHHHh--cCCchhHHHHHHHHHhccCCC----------cccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007648 385 VEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPM----------KAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQV 452 (594)
Q Consensus 385 ~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~----------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~ 452 (594)
+..|..++..+ .|++++|+..|++|+...+.. ........+|.++|.++...|++++|+..+++|++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 34566677665 389999999999999832110 000125689999999999999999999999999999
Q ss_pred cCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChH
Q 007648 453 NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLE 532 (594)
Q Consensus 453 ~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 532 (594)
+|+++ .+|+.+|.++...|++++|+..|++|+++.|+ ++.++..++.++...|+.+
T Consensus 303 ~p~~~----~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~--------------------~~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 303 DPSNT----KALYRRAQGWQGLKEYDQALADLKKAQEIAPE--------------------DKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp CTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------CHHHHHHHHHHHHHHHHHH
T ss_pred CchhH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------------------CHHHHHHHHHHHHHHHHHH
Confidence 99999 99999999999999999999999999999995 5678888888888888887
Q ss_pred HHHH
Q 007648 533 STRA 536 (594)
Q Consensus 533 ~A~~ 536 (594)
++.+
T Consensus 359 ~a~k 362 (370)
T 1ihg_A 359 DKEK 362 (370)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 193
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.80 E-value=2.1e-08 Score=78.58 Aligned_cols=82 Identities=12% Similarity=0.198 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHH
Q 007648 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (594)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (594)
..|+.+|..+...|++++|...|+++++..|+ ++.+|..++.++...|++++|+..++++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--------------------NAEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--------------------CHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56777777777777888888888888777774 4567777777777888888888888888
Q ss_pred HhccCCchHHHHHHHHHHHHhc
Q 007648 542 LDLRIATPQIIINYALLLEVWT 563 (594)
Q Consensus 542 l~~~P~~~~~~~~~~~~~~~~g 563 (594)
++.+|+++.++.+++.++...|
T Consensus 70 ~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 70 LELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCCCCHHHHHHHHHHHHhcC
Confidence 8888888888888887776654
No 194
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.78 E-value=2.8e-07 Score=89.37 Aligned_cols=161 Identities=12% Similarity=0.087 Sum_probs=118.4
Q ss_pred hccCCCChHHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 007648 378 LRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK 455 (594)
Q Consensus 378 l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~ 455 (594)
+...+.+...+..++.++. |++++|+.++.+++..-+ . ....+++...++++.+.|+.+.|++.+++..+.+|+
T Consensus 93 ~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-~---~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d 168 (310)
T 3mv2_B 93 LKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDE-A---EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIED 168 (310)
T ss_dssp TTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-S---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCH
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-C---cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 3444455566667777764 999999999999987432 1 126789999999999999999999999999999983
Q ss_pred -----ChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCC
Q 007648 456 -----TVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN 530 (594)
Q Consensus 456 -----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 530 (594)
+. .+..+.-.|+.+....+++.+|..+|+++.+..|+. .++.+... .+.++|+
T Consensus 169 ~~~~~d~-~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~------------------~~~~lLln---~~~~~g~ 226 (310)
T 3mv2_B 169 TVSGDNE-MILNLAESYIKFATNKETATSNFYYYEELSQTFPTW------------------KTQLGLLN---LHLQQRN 226 (310)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSH------------------HHHHHHHH---HHHHHTC
T ss_pred ccccchH-HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCc------------------ccHHHHHH---HHHHcCC
Confidence 32 111111122233333448999999999999998830 01222222 6788999
Q ss_pred hHHHHHHHHHHHhc----------cCCchHHHHHHHHHHHHhch
Q 007648 531 LESTRAVYERILDL----------RIATPQIIINYALLLEVWTL 564 (594)
Q Consensus 531 ~~~A~~~~~~al~~----------~P~~~~~~~~~~~~~~~~g~ 564 (594)
+++|.+.+++.++. +|++|++..|++-+....|+
T Consensus 227 ~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 227 IAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL 270 (310)
T ss_dssp HHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence 99999999988876 58999999999888887886
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.75 E-value=8.3e-09 Score=84.39 Aligned_cols=101 Identities=7% Similarity=-0.020 Sum_probs=83.0
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhc
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 501 (594)
.+..|..+|..+...|++++|+..|+++++.+|+++ .+|+.+|.++.+.|++++|+..++++++..|++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------ 72 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNP----VGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAE------ 72 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTT------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcc------
Confidence 467889999999999999999999999999999998 8999999999999999999999999999999520
Q ss_pred cCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHH
Q 007648 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540 (594)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 540 (594)
.. ..-...+...+..+...|+++.|...+++
T Consensus 73 --~~------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 73 --HV------AIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp --SH------HHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred --HH------HHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 00 00146677778888888888777666554
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.75 E-value=5e-08 Score=80.60 Aligned_cols=84 Identities=11% Similarity=0.039 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHH
Q 007648 400 TKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKG 479 (594)
Q Consensus 400 ~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (594)
+.++..|++++.. .|. .+.+|..+|.++...|++++|+..|+++++.+|+++ ..|+.+|.++...|++++
T Consensus 2 ~~a~~~~~~al~~-~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~ 71 (115)
T 2kat_A 2 QAITERLEAMLAQ-GTD-----NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS----VAWKWLGKTLQGQGDRAG 71 (115)
T ss_dssp CCHHHHHHHHHTT-TCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHH
T ss_pred hHHHHHHHHHHHh-CCC-----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHcCCHHH
Confidence 4578899999985 443 578999999999999999999999999999999999 899999999999999999
Q ss_pred HHHHHHHHhcCCch
Q 007648 480 ALELMRRATAEPSV 493 (594)
Q Consensus 480 A~~~~~~al~~~p~ 493 (594)
|+..|+++++..|.
T Consensus 72 A~~~~~~al~~~~~ 85 (115)
T 2kat_A 72 ARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc
Confidence 99999999999885
No 197
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.70 E-value=1e-06 Score=85.32 Aligned_cols=192 Identities=9% Similarity=0.050 Sum_probs=125.6
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHhcccHHHHH
Q 007648 45 RFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMH--KMPRIWIMYLETLTSQKFITKAR 122 (594)
Q Consensus 45 a~~~~e~al~~~P~s~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P--~~~~lw~~y~~~~~~~~~~~~A~ 122 (594)
+...+++.++..+.+...+...+... ...|++++|.+.+.+++..+| .+.++....++++.++|+.+.|+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~--------~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~ 156 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQ--------AILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAS 156 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHH--------HHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHH--------HHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHH
Confidence 56677777766555555544333333 234888888888888888876 78888888888888888888888
Q ss_pred HHHHHHHHhCCC--CCHHHHHHHHH----HHHHHcCCchHHHHHHHHHHHhhCCC--CHHHHHHHHHhcccHHHHHHHHH
Q 007648 123 RTFDRALCALPV--TQHDRIWEIYL----RFVEQEGIPIETSLRVYRRYLKYDPS--HIEDFIEFLVKSKLWQEAAERLA 194 (594)
Q Consensus 123 ~~~~ral~~~p~--~~~~~~w~~~~----~~~~~~~~~~~~a~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~a~~~~~ 194 (594)
+.+++..+..|. .....+...++ .+...-+++ .+|..+|+++....|+ ....+...+...|++++|...++
T Consensus 157 k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~-q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 157 TIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETA-TSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTT-THHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccH-HHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888887772 00012222222 222222366 7888888888877776 23344457778888888888877
Q ss_pred Hhhc-CcccccccccchHHHHHHHHHHHhhcccccccCcHHHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHH
Q 007648 195 SVLN-DDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFE 273 (594)
Q Consensus 195 ~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~ 273 (594)
.++. .|.+. ... ...|++ +++..+++.+....|+ .|.+.++
T Consensus 236 ~l~~~~p~~~------------------~k~-----------------~~~p~~-~~~LaN~i~l~~~lgk--~a~~l~~ 277 (310)
T 3mv2_B 236 LLLSDYYSVE------------------QKE-----------------NAVLYK-PTFLANQITLALMQGL--DTEDLTN 277 (310)
T ss_dssp HHHSHHHHTT------------------TCH-----------------HHHSSH-HHHHHHHHHHHHHTTC--TTHHHHH
T ss_pred HHHHhccccc------------------ccc-----------------cCCCCC-HHHHHHHHHHHHHhCh--HHHHHHH
Confidence 5542 11000 000 001222 5677777777777887 8889999
Q ss_pred HHHhhhcccc
Q 007648 274 EGMMTVVTVR 283 (594)
Q Consensus 274 ~al~~~p~~~ 283 (594)
++.+..|+++
T Consensus 278 qL~~~~P~hp 287 (310)
T 3mv2_B 278 QLVKLDHEHA 287 (310)
T ss_dssp HHHHTTCCCH
T ss_pred HHHHhCCCCh
Confidence 9999999887
No 198
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.65 E-value=2.5e-08 Score=79.83 Aligned_cols=91 Identities=13% Similarity=0.029 Sum_probs=69.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHH-HHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCCh
Q 007648 427 VAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLAS-IWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNE 505 (594)
Q Consensus 427 ~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 505 (594)
+..|..+...|++++|+..|+++++.+|+++ . +|+.+|.++...|++++|++.|+++++.+|+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------------ 67 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGK----DEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD------------ 67 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTH----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------
Confidence 4456667778888888888888888888887 7 8888888888888888888888888888884
Q ss_pred hhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCch
Q 007648 506 PVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP 549 (594)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~ 549 (594)
++..|.. +.+.++...|++++..+|+++
T Consensus 68 --------~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 68 --------SPALQAR--------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp --------STHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred --------cHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence 2233321 456777888888888777765
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.65 E-value=9e-08 Score=76.98 Aligned_cols=66 Identities=17% Similarity=0.170 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHH
Q 007648 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (594)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (594)
.+|+.+|.++...|++++|+..|+++++.+|+ ++..|..++.++...|++++|+..|+++
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPD--------------------YVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------------------CTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555555555555555555555555555552 2344555555555555555555555555
Q ss_pred HhccCC
Q 007648 542 LDLRIA 547 (594)
Q Consensus 542 l~~~P~ 547 (594)
+++.|.
T Consensus 68 l~l~~~ 73 (100)
T 3ma5_A 68 IEVARE 73 (100)
T ss_dssp HHHHHH
T ss_pred Hhhhhc
Confidence 554443
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.62 E-value=2.5e-07 Score=72.32 Aligned_cols=84 Identities=13% Similarity=0.251 Sum_probs=67.7
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhc
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 501 (594)
....|..+|..+...|++++|+..|+++++..|+++ .+|..+|.++...|++++|+..|+++++.+|+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-------- 75 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA----EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-------- 75 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--------
Confidence 456788888888888888888888888888888888 78888888888888888888888888888884
Q ss_pred cCChhhhHHhhccHhhHHHHHHHHHHhC
Q 007648 502 DGNEPVQMKLHKSLRLWTFYVDLEESLG 529 (594)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g 529 (594)
++..+..++.++.+.|
T Consensus 76 ------------~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 76 ------------NAEAKQNLGNAKQKQG 91 (91)
T ss_dssp ------------CHHHHHHHHHHHHHHC
T ss_pred ------------CHHHHHHHHHHHHhcC
Confidence 4566677766665544
No 201
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.55 E-value=2.2e-06 Score=88.54 Aligned_cols=142 Identities=11% Similarity=0.036 Sum_probs=105.7
Q ss_pred HHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cCCChhhHHHHHHH
Q 007648 391 RVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQV--NYKTVDHLASIWCE 466 (594)
Q Consensus 391 ~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~--~p~~~~~~~~~~~~ 466 (594)
++.+.. |+++++..++++++..............++..+|.++...|++++|..++++++.. ..++......++..
T Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (434)
T 4b4t_Q 101 IEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLL 180 (434)
T ss_dssp HHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 444443 78999999999999753222112234688999999999999999999999999874 22333345578999
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q 007648 467 WAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR 545 (594)
Q Consensus 467 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 545 (594)
.+.++...|++++|+.++++++...|... .+.. .-..++...+.++...|++++|...|..++...
T Consensus 181 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~~~------~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 181 ESKVYHKLRNLAKSKASLTAARTAANSIY-------CPTQ------TVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSC-------CCHH------HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHhhcCC-------CchH------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 99999999999999999999997755200 0000 012567778888888999999999999998853
No 202
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.54 E-value=7.2e-06 Score=84.60 Aligned_cols=188 Identities=9% Similarity=0.074 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhh
Q 007648 249 GRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDI 328 (594)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 328 (594)
..+...+|.+|...|++++|.+.|++++...+..... .....+. .... .+...
T Consensus 55 ~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~---~~l~-~~~~~--------------------- 107 (434)
T 4b4t_Q 55 ETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS--KTVKVLK---TLIE-KFEQV--------------------- 107 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH--HHHHHHH---HHHH-HHCSC---------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch--HHHHHHH---HHHH-HHHhC---------------------
Confidence 3578899999999999999999999999877654321 0000000 0000 00000
Q ss_pred HhhhhhhHHHHHHhhhccccccchhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc--CCchhHHHHH
Q 007648 329 RLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTY 406 (594)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~y 406 (594)
.+....+...+++++.... .....+.-..++..++.++. |++++|...+
T Consensus 108 -----------------------~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 158 (434)
T 4b4t_Q 108 -----------------------PDSLDDQIFVCEKSIEFAK------REKRVFLKHSLSIKLATLHYQKKQYKDSLALI 158 (434)
T ss_dssp -----------------------CSCHHHHHHHHHHHHHHHH------HSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -----------------------CCCHHHHHHHHHHHHHHHH------HhCccHHHHHHHHHHHHHHHHccChHHHHHHH
Confidence 0112222333333321110 12333445677788888874 8999999999
Q ss_pred HHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc---CCChhhHHHHHHHHHHHHHhcCChHHHHHH
Q 007648 407 TEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVN---YKTVDHLASIWCEWAEMELRHKNFKGALEL 483 (594)
Q Consensus 407 ~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 483 (594)
++++..+...........++...+.++...|++++|+.++++++... ++.+.....++...|.+....|++++|...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~ 238 (434)
T 4b4t_Q 159 NDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSY 238 (434)
T ss_dssp HHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99987643322222357889999999999999999999999999864 444444556788888888889999999999
Q ss_pred HHHHhcCCc
Q 007648 484 MRRATAEPS 492 (594)
Q Consensus 484 ~~~al~~~p 492 (594)
|.+++...+
T Consensus 239 ~~~a~~~~~ 247 (434)
T 4b4t_Q 239 FFESFESYH 247 (434)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999987543
No 203
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.53 E-value=1.5e-06 Score=85.79 Aligned_cols=155 Identities=9% Similarity=0.092 Sum_probs=115.1
Q ss_pred hHhHHHHhhCCCCHHHHHHHHHHHH---c---CChhHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhccCCCCCchhHHH
Q 007648 14 LLYEEELLRNPFSLKLWWRYLVAKR---E---APFKKRFVIYERALKALPGSYKLWHAYLIERL-SIVKNLPITHPEYET 86 (594)
Q Consensus 14 ~~~e~~l~~~P~~~~~w~~~~~~~~---~---~~~~~a~~~~e~al~~~P~s~~lW~~~~~~~~-~~~~~~~~~~~~~~~ 86 (594)
-..++...+-|.+.++|-.|++... . .++.+|+.+|++|++.+|.....|-..+-... ..... .........
T Consensus 181 ~e~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~-~~~~~~~~~ 259 (372)
T 3ly7_A 181 RMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQH-PLDEKQLAA 259 (372)
T ss_dssp HHHHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHS-CCCHHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccC-CCchhhHHH
Confidence 3455677888999999999998542 3 34589999999999999999888775332211 11000 112223333
Q ss_pred HHHHHHHH--HHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 007648 87 LNNTFERA--LVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRR 164 (594)
Q Consensus 87 A~~~~~~a--l~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~ 164 (594)
....++.+ +..+|.++.++..++-.....|+++.|...++||+.++|. ...|..++......|++ ++|...|++
T Consensus 260 l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s---~~a~~llG~~~~~~G~~-~eA~e~~~~ 335 (372)
T 3ly7_A 260 LNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS---WLNYVLLGKVYEMKGMN-REAADAYLT 335 (372)
T ss_dssp HHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHTTCH-HHHHHHHHH
T ss_pred HHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHCCCH-HHHHHHHHH
Confidence 33444432 2457999999999998888889999999999999999874 35566677777889999 999999999
Q ss_pred HHhhCCCCH
Q 007648 165 YLKYDPSHI 173 (594)
Q Consensus 165 ~l~~~p~~~ 173 (594)
++.++|...
T Consensus 336 AlrL~P~~~ 344 (372)
T 3ly7_A 336 AFNLRPGAN 344 (372)
T ss_dssp HHHHSCSHH
T ss_pred HHhcCCCcC
Confidence 999999875
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.52 E-value=3.7e-07 Score=73.27 Aligned_cols=68 Identities=12% Similarity=0.102 Sum_probs=62.2
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCch
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSV 493 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 493 (594)
.+.+|+.+|.++...|++++|+..|+++++.+|+++ .+|+.+|.++...|++++|+..|++++++.|.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYV----GTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 578899999999999999999999999999999999 89999999999999999999999999988774
No 205
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.44 E-value=1.7e-06 Score=85.31 Aligned_cols=142 Identities=13% Similarity=0.026 Sum_probs=103.3
Q ss_pred hccCCCChHHHHHHHHHh----cC---CchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHh---cC-C----HHHH
Q 007648 378 LRQNPHNVEQWHRRVKIF----EG---NPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYET---YK-D----IANA 442 (594)
Q Consensus 378 l~~~p~~~~~~~~~~~~~----~~---~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~---~~-~----~~~A 442 (594)
.+.-|.+.++|-.+.+.. .+ +..+|+.+|++|++. +|+ ++.+|..++.++.. .+ . ....
T Consensus 187 ~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l-DP~-----~a~A~A~la~a~~~~~~~~~~~~~~~~~l 260 (372)
T 3ly7_A 187 QKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS-SPE-----FTYARAEKALVDIVRHSQHPLDEKQLAAL 260 (372)
T ss_dssp HHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH-CTT-----CHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred hccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-CCC-----CHHHHHHHHHHHHHHhccCCCchhhHHHH
Confidence 455788888886654332 22 468899999999996 664 56666655555531 11 1 1112
Q ss_pred HHHHHH--HHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHH
Q 007648 443 RVIFDK--AVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTF 520 (594)
Q Consensus 443 ~~~~~k--al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (594)
...++. ++...|.++ .++..++......|++++|+..+++|+.++| +...|..
T Consensus 261 ~~a~~a~~a~~~~~~~a----~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~---------------------s~~a~~l 315 (372)
T 3ly7_A 261 NTEIDNIVTLPELNNLS----IIYQIKAVSALVKGKTDESYQAINTGIDLEM---------------------SWLNYVL 315 (372)
T ss_dssp HHHHHHHHTCGGGTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC---------------------CHHHHHH
T ss_pred HHHHHHHHhcccCCcCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---------------------CHHHHHH
Confidence 222332 234568888 7777787777778999999999999999998 3566788
Q ss_pred HHHHHHHhCChHHHHHHHHHHHhccCCchH
Q 007648 521 YVDLEESLGNLESTRAVYERILDLRIATPQ 550 (594)
Q Consensus 521 ~~~~~~~~g~~~~A~~~~~~al~~~P~~~~ 550 (594)
++.++...|++++|...|++|+.++|..+.
T Consensus 316 lG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 316 LGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 888999999999999999999999998863
No 206
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.43 E-value=6.1e-07 Score=71.55 Aligned_cols=70 Identities=11% Similarity=0.195 Sum_probs=62.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHh-hHHHHHHHHHHhCChHHHHHHHHHHHh
Q 007648 465 CEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLR-LWTFYVDLEESLGNLESTRAVYERILD 543 (594)
Q Consensus 465 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~A~~~~~~al~ 543 (594)
+..|..+.+.|++++|...|+++++..|+ ++. +|..++.++...|++++|++.|+++++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~--------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPV--------------------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS--------------------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC--------------------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34566677899999999999999999995 567 999999999999999999999999999
Q ss_pred ccCCchHHHHH
Q 007648 544 LRIATPQIIIN 554 (594)
Q Consensus 544 ~~P~~~~~~~~ 554 (594)
++|+++.++.+
T Consensus 64 ~~p~~~~~~~~ 74 (99)
T 2kc7_A 64 LNPDSPALQAR 74 (99)
T ss_dssp HCTTSTHHHHH
T ss_pred cCCCcHHHHHH
Confidence 99999998843
No 207
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.42 E-value=2.8e-06 Score=80.34 Aligned_cols=158 Identities=16% Similarity=0.173 Sum_probs=107.2
Q ss_pred hhccCCCChHHHHHHHHHhc-------C----------------CchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHH
Q 007648 377 LLRQNPHNVEQWHRRVKIFE-------G----------------NPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLY 433 (594)
Q Consensus 377 ~l~~~p~~~~~~~~~~~~~~-------~----------------~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~ 433 (594)
.+..+|+|......-+.++. . ++.+|+.+|.+|.... +.-+.
T Consensus 58 Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~---------------~raL~ 122 (301)
T 3u64_A 58 LHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYA---------------LSSLE 122 (301)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHH---------------HHHHH
T ss_pred HHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHH---------------HHHHH
Confidence 57889999887766555542 1 1346677777766521 01111
Q ss_pred HhcCCHHHHH-----HHHHHHHh-ccCCChhhHHHHHHHHHHHH-Hh--cC------ChHHHHHHHHHHhcCCchhHhhh
Q 007648 434 ETYKDIANAR-----VIFDKAVQ-VNYKTVDHLASIWCEWAEME-LR--HK------NFKGALELMRRATAEPSVEVRRR 498 (594)
Q Consensus 434 ~~~~~~~~A~-----~~~~kal~-~~p~~~~~~~~~~~~~~~~~-~~--~~------~~~~A~~~~~~al~~~p~~~~~~ 498 (594)
.+...+.++. .-+.+++. .+|++++. -+|...+... .. .| ..+.|+.+++||++++|+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~--L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~---- 196 (301)
T 3u64_A 123 TAYPGFTREVFSGDEQRLHKVLSRCTRVDVGT--LYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSY---- 196 (301)
T ss_dssp HHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHH--HHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTH----
T ss_pred HhCccHHHHHHhcchhhHHHHHHHcCccccHH--HHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCc----
Confidence 1222232222 23556665 57888744 2455444432 12 23 3688999999999999951
Q ss_pred hhccCChhhhHHhhccHhhHHHHHHHHHHh-----CChHHHHHHHHHHHhccCCc-hHHHHHHHHHHHHh-chhhhhh
Q 007648 499 VAADGNEPVQMKLHKSLRLWTFYVDLEESL-----GNLESTRAVYERILDLRIAT-PQIIINYALLLEVW-TLLHVFL 569 (594)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~~A~~~~~~al~~~P~~-~~~~~~~~~~~~~~-g~~~~a~ 569 (594)
.+...|..++.+|.+. |+.++|++.|+||++++|+. +++.+-|++++... |++++|.
T Consensus 197 --------------~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~ 260 (301)
T 3u64_A 197 --------------QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFD 260 (301)
T ss_dssp --------------HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHH
T ss_pred --------------ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHH
Confidence 1457889999999884 99999999999999999975 99999999999874 8777765
No 208
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.41 E-value=8.3e-07 Score=83.89 Aligned_cols=88 Identities=13% Similarity=0.103 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHhccCC--ChhhHHHHHHHHHHHHHh-----cCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHH
Q 007648 438 DIANARVIFDKAVQVNYK--TVDHLASIWCEWAEMELR-----HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMK 510 (594)
Q Consensus 438 ~~~~A~~~~~kal~~~p~--~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 510 (594)
....|+..++||++++|+ +. ..|..+|.++.+ .|+.++|+++|+||++++|+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~G----sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~----------------- 236 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEG----AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA----------------- 236 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHH----HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT-----------------
T ss_pred hHHHHHHHHHHHHHhCCCcccC----HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC-----------------
Confidence 457899999999999998 55 688888888877 48999999999999999995
Q ss_pred hhccHhhHHHHHHHHHHh-CChHHHHHHHHHHHhccCCc
Q 007648 511 LHKSLRLWTFYVDLEESL-GNLESTRAVYERILDLRIAT 548 (594)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~~~P~~ 548 (594)
.+...++.|++++... |+.++|.+.+++|++..|..
T Consensus 237 --~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 237 --HDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp --TCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred --CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 1357788899998874 89999999999999988774
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.36 E-value=6.3e-06 Score=70.43 Aligned_cols=121 Identities=10% Similarity=-0.003 Sum_probs=97.1
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHh---
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELR--- 473 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~--- 473 (594)
+++++|...|++|.+.-++ .+. +|.++...+..++|+..|++|.+. .++ ..++.++.++..
T Consensus 9 ~d~~~A~~~~~~aa~~g~~--------~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~----~a~~~Lg~~y~~G~g 72 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM--------FGC--LSLVSNSQINKQKLFQYLSKACEL--NSG----NGCRFLGDFYENGKY 72 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT--------THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCH----HHHHHHHHHHHHCSS
T ss_pred cCHHHHHHHHHHHHcCCCH--------hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCH----HHHHHHHHHHHcCCC
Confidence 3578899999999986433 233 888888888899999999999976 566 788889998877
Q ss_pred -cCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHH----hCChHHHHHHHHHHHhccCCc
Q 007648 474 -HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEES----LGNLESTRAVYERILDLRIAT 548 (594)
Q Consensus 474 -~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~P~~ 548 (594)
.+++++|..+|++|.+.. ++..+..++.++.. .+++++|+.+|++|.+. .+
T Consensus 73 ~~~d~~~A~~~~~~Aa~~g----------------------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~ 128 (138)
T 1klx_A 73 VKKDLRKAAQYYSKACGLN----------------------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GS 128 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC
T ss_pred CCccHHHHHHHHHHHHcCC----------------------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CC
Confidence 789999999999998773 34677888888888 89999999999999997 45
Q ss_pred hHHHHHHHH
Q 007648 549 PQIIINYAL 557 (594)
Q Consensus 549 ~~~~~~~~~ 557 (594)
+.+..+++.
T Consensus 129 ~~A~~~l~~ 137 (138)
T 1klx_A 129 EDACGILNN 137 (138)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 666655543
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.25 E-value=3.3e-06 Score=66.53 Aligned_cols=73 Identities=10% Similarity=-0.071 Sum_probs=45.5
Q ss_pred cCCChhhHHHHHHHHHHHHHhcCC---hHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhC
Q 007648 453 NYKTVDHLASIWCEWAEMELRHKN---FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLG 529 (594)
Q Consensus 453 ~p~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 529 (594)
+|+++ .+|..+|..+...++ .++|+.++++|++.+|+ ++..+..+|..+...|
T Consensus 2 ~p~~~----~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~--------------------~~rA~~~lg~~~~~~g 57 (93)
T 3bee_A 2 NAVTA----TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY--------------------NEAALSLIANDHFISF 57 (93)
T ss_dssp CCCCH----HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT--------------------CHHHHHHHHHHHHHTT
T ss_pred CCCCH----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC--------------------CHHHHHHHHHHHHHcC
Confidence 46666 666666666543322 56666666666666663 4556666666666666
Q ss_pred ChHHHHHHHHHHHhccCCch
Q 007648 530 NLESTRAVYERILDLRIATP 549 (594)
Q Consensus 530 ~~~~A~~~~~~al~~~P~~~ 549 (594)
++++|+..|+++++.+|.+|
T Consensus 58 ~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 58 RFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CHHHHHHHHHHHHTCCCTTC
T ss_pred CHHHHHHHHHHHHhhCCCCc
Confidence 66666666666666666643
No 211
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.22 E-value=1.7e-05 Score=82.75 Aligned_cols=126 Identities=6% Similarity=-0.122 Sum_probs=98.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhc-----cCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChh
Q 007648 432 LYETYKDIANARVIFDKAVQV-----NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEP 506 (594)
Q Consensus 432 ~~~~~~~~~~A~~~~~kal~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 506 (594)
-+..+|++++|+..++++|.+ .|++|++. ..+..++..+..+|++++|..++++++...-. . .|.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a-~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~----~---lG~-- 387 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVL-RLLSIASEVLSYLQAYEEASHYARRMVDGYMK----L---YHH-- 387 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----H---SCT--
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH----H---cCC--
Confidence 345789999999999999974 47777544 56788888889999999999999999976321 0 000
Q ss_pred hhHHhhccH---hhHHHHHHHHHHhCChHHHHHHHHHHHh-----ccCCchHHH---HHHHHHHHHhchhhhhhhccc
Q 007648 507 VQMKLHKSL---RLWTFYVDLEESLGNLESTRAVYERILD-----LRIATPQII---INYALLLEVWTLLHVFLLHVP 573 (594)
Q Consensus 507 ~~~~~~~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~-----~~P~~~~~~---~~~~~~~~~~g~~~~a~~~~~ 573 (594)
++| ..+..++.++..+|++++|...|++|++ +.|++|.+. .+++..+...|.+++|...|.
T Consensus 388 ------~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~ 459 (490)
T 3n71_A 388 ------NNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYH 459 (490)
T ss_dssp ------TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 4478889999999999999999999998 468888654 578888888888888875443
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.04 E-value=2e-05 Score=61.99 Aligned_cols=68 Identities=12% Similarity=0.035 Sum_probs=57.8
Q ss_pred chHHHHHHHHHHHhcCC---HHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCch
Q 007648 422 PHTLWVAFAKLYETYKD---IANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSV 493 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~---~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 493 (594)
.+++|..+|..+...++ .++|+..+++|++.+|+++ ..++.+|....+.|++++|+..++++++.+|+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~----rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNE----AALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57888888888764433 6899999999999999998 88888898888899999999999999998885
No 213
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.01 E-value=4.3e-05 Score=65.13 Aligned_cols=106 Identities=14% Similarity=0.032 Sum_probs=89.2
Q ss_pred cCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccH
Q 007648 436 YKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSL 515 (594)
Q Consensus 436 ~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 515 (594)
.+++++|+..|+++.+...... . ++.++...+++++|.++|++|.+.. ++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a------~--lg~~y~~g~~~~~A~~~~~~Aa~~g----------------------~~ 57 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFG------C--LSLVSNSQINKQKLFQYLSKACELN----------------------SG 57 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTH------H--HHHHTCTTSCHHHHHHHHHHHHHTT----------------------CH
T ss_pred ccCHHHHHHHHHHHHcCCCHhh------h--HHHHHHcCCCHHHHHHHHHHHHcCC----------------------CH
Confidence 3578999999999998764333 2 7888878888999999999999874 34
Q ss_pred hhHHHHHHHHHH----hCChHHHHHHHHHHHhccCCchHHHHHHHHHHHH----hchhhhhhhccc
Q 007648 516 RLWTFYVDLEES----LGNLESTRAVYERILDLRIATPQIIINYALLLEV----WTLLHVFLLHVP 573 (594)
Q Consensus 516 ~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~----~g~~~~a~~~~~ 573 (594)
..+..++.++.. .+++++|+.+|++|.+. .++.+..+++.++.. .+++++|+..+.
T Consensus 58 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~ 121 (138)
T 1klx_A 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFE 121 (138)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 777888888888 78999999999999986 789999999999998 789999886544
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.01 E-value=5.3e-05 Score=64.62 Aligned_cols=98 Identities=14% Similarity=0.069 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcC---ChHHHHHHHHHHhcCC-chhHhhhhhccCChhhhHHhhc
Q 007648 438 DIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK---NFKGALELMRRATAEP-SVEVRRRVAADGNEPVQMKLHK 513 (594)
Q Consensus 438 ~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~ 513 (594)
.+..+++.|++.+...|.++ ...+.|+-.+.+.+ ++++++.+++..++.. |++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~----~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~------------------- 69 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSK----STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE------------------- 69 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCH----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH-------------------
T ss_pred HHHHHHHHHHHHHccCCCcH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc-------------------
Confidence 45778888898888888887 88888888888876 6679999999999887 731
Q ss_pred cHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHH
Q 007648 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALL 558 (594)
Q Consensus 514 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~ 558 (594)
..+.++.++-.+.+.|++++|++.++++|+..|++.++..-...+
T Consensus 70 ~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 70 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 235566667777899999999999999999999998887654443
No 215
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.99 E-value=5.5e-05 Score=78.98 Aligned_cols=142 Identities=10% Similarity=0.019 Sum_probs=102.7
Q ss_pred cCCchhHHHHHHHHHhcc----CCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----cCCChhhHHHHHHH
Q 007648 396 EGNPTKQILTYTEAVRTV----DPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQV-----NYKTVDHLASIWCE 466 (594)
Q Consensus 396 ~~~~~~a~~~y~~Ai~~~----~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~-----~p~~~~~~~~~~~~ 466 (594)
.|++++|...|++++... .+++ ......+.++|.++..+|++++|..+++++|.+ .|++|++. ..+..
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~H--p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a-~~l~n 398 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTN--LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG-MAVMR 398 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTS--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH-HHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH-HHHHH
Confidence 388999999999999752 2222 125678889999999999999999999999975 57777543 56788
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccC
Q 007648 467 WAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRI 546 (594)
Q Consensus 467 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P 546 (594)
+|.++..+|++++|..+|++|+++.-. ..|.-.+ .-..+...+...+..+|.+++|...|.++.+..-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~-------~lG~~Hp-----~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLV-------THGPSHP-----ITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH-------HTCTTSH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHH-------HhCCCCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999975321 0010000 0013346677777788999999999999877554
Q ss_pred CchHHH
Q 007648 547 ATPQII 552 (594)
Q Consensus 547 ~~~~~~ 552 (594)
++-.+|
T Consensus 467 ~~~~~~ 472 (490)
T 3n71_A 467 NNQPMQ 472 (490)
T ss_dssp TC----
T ss_pred cCCCCc
Confidence 444444
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.89 E-value=9.4e-05 Score=59.48 Aligned_cols=86 Identities=9% Similarity=0.049 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHH
Q 007648 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (594)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (594)
.-.+.+|......|+++.|..+|+.|++..+++. . .....+.++..++..+.++|+++.|...++++
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~--------~-----~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGE--------I-----STIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--------C-----CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC--------C-----CcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4567788888889999999999999987643200 0 00124688899999999999999999999999
Q ss_pred HhccCCchHHHHHHHHHHH
Q 007648 542 LDLRIATPQIIINYALLLE 560 (594)
Q Consensus 542 l~~~P~~~~~~~~~~~~~~ 560 (594)
+++.|+++.+..++..+..
T Consensus 73 l~l~P~~~~~~~n~~~~~~ 91 (104)
T 2v5f_A 73 LELDPEHQRANGNLKYFEY 91 (104)
T ss_dssp HHHCTTCHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHhhHHHHHH
Confidence 9999999999888874443
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.77 E-value=0.00024 Score=72.88 Aligned_cols=103 Identities=17% Similarity=0.136 Sum_probs=81.2
Q ss_pred hcCCHHHHHHHHHHHHhc-----cCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhH
Q 007648 435 TYKDIANARVIFDKAVQV-----NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQM 509 (594)
Q Consensus 435 ~~~~~~~A~~~~~kal~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 509 (594)
..|++++|...++++|.+ .|++|.+. ..+..++..+..+|++++|..++++++...-. ..|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a-~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~-------~lG~----- 376 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYML-HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSK-------HYPV----- 376 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------HSCS-----
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH-------HcCC-----
Confidence 468999999999999974 58888544 56777888888999999999999999975220 0000
Q ss_pred HhhccH---hhHHHHHHHHHHhCChHHHHHHHHHHHh-----ccCCchHHHH
Q 007648 510 KLHKSL---RLWTFYVDLEESLGNLESTRAVYERILD-----LRIATPQIII 553 (594)
Q Consensus 510 ~~~~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~-----~~P~~~~~~~ 553 (594)
++| ..+..++.++..+|++++|...|+||++ ..|++|.+-.
T Consensus 377 ---~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 377 ---YSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp ---SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred ---CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 122 4478889999999999999999999999 4689987665
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.71 E-value=0.00028 Score=60.13 Aligned_cols=94 Identities=13% Similarity=0.014 Sum_probs=81.2
Q ss_pred CCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcc---cHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHcCCc
Q 007648 79 ITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQK---FITKARRTFDRALCAL-PVTQHDRIWEIYLRFVEQEGIP 154 (594)
Q Consensus 79 ~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~---~~~~A~~~~~ral~~~-p~~~~~~~w~~~~~~~~~~~~~ 154 (594)
...+....+++.|.+.+..+|.++...+.|+.++.+.+ +++++..+++..++.. |.. +.+.+..++....+++++
T Consensus 9 l~~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~-~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 9 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE-QRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH-HHHHHHHHHHHHHHTSCH
T ss_pred CCHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc-hHHHHHHHHHHHHHccCH
Confidence 45677889999999999999999999999999999987 6789999999999988 632 256666666666789999
Q ss_pred hHHHHHHHHHHHhhCCCCHH
Q 007648 155 IETSLRVYRRYLKYDPSHIE 174 (594)
Q Consensus 155 ~~~a~~~~~~~l~~~p~~~~ 174 (594)
++|++.++++++.+|++.+
T Consensus 88 -~~A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 88 -EKALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp -HHHHHHHHHHHHHCTTCHH
T ss_pred -HHHHHHHHHHHhcCCCCHH
Confidence 9999999999999999974
No 219
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=97.69 E-value=0.00047 Score=58.49 Aligned_cols=121 Identities=15% Similarity=0.166 Sum_probs=75.7
Q ss_pred hHhHHHHhhCC-CC-HHHHHHHHHHHH----cCChhHHHHHHHHHHHhCCC---------ChHHHHHHHHHHHHhccCCC
Q 007648 14 LLYEEELLRNP-FS-LKLWWRYLVAKR----EAPFKKRFVIYERALKALPG---------SYKLWHAYLIERLSIVKNLP 78 (594)
Q Consensus 14 ~~~e~~l~~~P-~~-~~~w~~~~~~~~----~~~~~~a~~~~e~al~~~P~---------s~~lW~~~~~~~~~~~~~~~ 78 (594)
..||..|.... .| .+.|.+||++.. .|. .....+++++++.+-+ -+.+|+.|++..
T Consensus 11 ~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~-------- 81 (152)
T 4a1g_A 11 QMLEAHMQSYKGNDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN-------- 81 (152)
T ss_dssp HHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB--------
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc--------
Confidence 45677666533 22 377888888664 233 3356777777765532 346777776542
Q ss_pred CCchhHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007648 79 ITHPEYETLNNTFERALVTM--HKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQ 150 (594)
Q Consensus 79 ~~~~~~~~A~~~~~~al~~~--P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~ 150 (594)
+.+..+|..+.... -..+..|..+|.++...|++++|..+|+.+++....+ ...+-..+..|..+
T Consensus 82 ------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P-~~rL~~~~~~F~~R 148 (152)
T 4a1g_A 82 ------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP-REFLQQQYRLFQTR 148 (152)
T ss_dssp ------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS-HHHHHHHHHHHHHT
T ss_pred ------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-HHHHHHHHHHHHHH
Confidence 22566677666543 4666777888888877888888888888888765543 24555556555543
No 220
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.0017 Score=57.56 Aligned_cols=128 Identities=18% Similarity=0.279 Sum_probs=95.1
Q ss_pred chHhHHHHhh---CCCC-HHHHHHHHHHHH----cCCh---hHHH-HHHHHHHHhC---------CCChHHHHHHHHHHH
Q 007648 13 DLLYEEELLR---NPFS-LKLWWRYLVAKR----EAPF---KKRF-VIYERALKAL---------PGSYKLWHAYLIERL 71 (594)
Q Consensus 13 ~~~~e~~l~~---~P~~-~~~w~~~~~~~~----~~~~---~~a~-~~~e~al~~~---------P~s~~lW~~~~~~~~ 71 (594)
+..||..|.. .-.| .+.|.+||++.. .|.. .... .+++|++..+ |.-+.+|..|++..
T Consensus 12 r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~- 90 (202)
T 3esl_A 12 KIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYINLF- 90 (202)
T ss_dssp HHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-
Confidence 5678888877 2233 489999999775 2332 2244 7899999854 34458999999873
Q ss_pred HhccCCCCCchhHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 007648 72 SIVKNLPITHPEYETLNNTFERALVTM--HKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVE 149 (594)
Q Consensus 72 ~~~~~~~~~~~~~~~A~~~~~~al~~~--P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~ 149 (594)
..+....+..+|.-+.... -..+..|..+|.++...|++++|..+|+.+++....+ ...+-..+..|..
T Consensus 91 --------~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P-~~rL~~~~~~F~~ 161 (202)
T 3esl_A 91 --------LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP-YNRLLRSLSNYED 161 (202)
T ss_dssp --------STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS-HHHHHHHHHHHHH
T ss_pred --------cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-HHHHHHHHHHHHH
Confidence 1133467888898888764 5788999999999999999999999999999987553 3566666666664
Q ss_pred H
Q 007648 150 Q 150 (594)
Q Consensus 150 ~ 150 (594)
+
T Consensus 162 R 162 (202)
T 3esl_A 162 R 162 (202)
T ss_dssp H
T ss_pred H
Confidence 4
No 221
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.62 E-value=0.0015 Score=68.48 Aligned_cols=141 Identities=11% Similarity=0.079 Sum_probs=99.9
Q ss_pred CCchhHHHHHHHHHhc-cCCCcccCCchHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhc--cCCChhhHHHHH
Q 007648 397 GNPTKQILTYTEAVRT-VDPMKAVGKPHTLWVAFAKLYETY---------KDIANARVIFDKAVQV--NYKTVDHLASIW 464 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~-~~~~~~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~kal~~--~p~~~~~~~~~~ 464 (594)
|+.++|..+|++.... +.| ....|..+...+... ++.++|..+|++-... .|+. ..|
T Consensus 40 G~~~~A~~lf~~M~~~Gv~p------d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~-----~ty 108 (501)
T 4g26_A 40 GDVLEALRLYDEARRNGVQL------SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE-----ATF 108 (501)
T ss_dssp CCHHHHHHHHHHHHHHTCCC------CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH-----HHH
T ss_pred CCHHHHHHHHHHHHHcCCCC------CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH-----HHH
Confidence 7889999999888764 444 334455554444332 3478888898887663 4544 456
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhc--CCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHH
Q 007648 465 CEWAEMELRHKNFKGALELMRRATA--EPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERIL 542 (594)
Q Consensus 465 ~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 542 (594)
..++..+.+.|++++|.++|++..+ ..| +...|...+..+.+.|+.++|.++|++..
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~P---------------------d~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQP---------------------RLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCC---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------------------ccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6677777788999999999987664 345 34667777788888888888888888877
Q ss_pred hcc-CCchHHHHHHHHHHHHhchhhhhh
Q 007648 543 DLR-IATPQIIINYALLLEVWTLLHVFL 569 (594)
Q Consensus 543 ~~~-P~~~~~~~~~~~~~~~~g~~~~a~ 569 (594)
+.. .-+..+|..+...+.+.|+.++|.
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~ 195 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVY 195 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHH
Confidence 743 224467888888888888888886
No 222
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=97.62 E-value=0.00093 Score=57.51 Aligned_cols=123 Identities=17% Similarity=0.217 Sum_probs=87.7
Q ss_pred chHhHHHHhhCC-CC-HHHHHHHHHHHH----cCCh-hHHHHHHHHHHHhCCC---------ChHHHHHHHHHHHHhccC
Q 007648 13 DLLYEEELLRNP-FS-LKLWWRYLVAKR----EAPF-KKRFVIYERALKALPG---------SYKLWHAYLIERLSIVKN 76 (594)
Q Consensus 13 ~~~~e~~l~~~P-~~-~~~w~~~~~~~~----~~~~-~~a~~~~e~al~~~P~---------s~~lW~~~~~~~~~~~~~ 76 (594)
...||..|...- .| .+.|.+||++.. .|.. .....++++++..+-. -+.+|+.|++..
T Consensus 3 r~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------ 76 (164)
T 2wvi_A 3 KRAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC------ 76 (164)
T ss_dssp THHHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------
Confidence 456777775432 22 489999999775 2332 2456789999987643 348888888763
Q ss_pred CCCCchhHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007648 77 LPITHPEYETLNNTFERALVTM--HKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQ 150 (594)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~~~--P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~ 150 (594)
+....+|..+.... -..+..|..+|.++...|++..|..+|+.+++....+ ...+-..+..|..+
T Consensus 77 --------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P-~~~L~~~~~~F~~R 143 (164)
T 2wvi_A 77 --------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP-LERLQSQHRQFQAR 143 (164)
T ss_dssp --------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS-HHHHHHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHH
Confidence 23567787777653 5778899999999999999999999999999977554 35666667666644
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.52 E-value=0.0013 Score=67.58 Aligned_cols=109 Identities=7% Similarity=-0.143 Sum_probs=83.4
Q ss_pred hcCCHHHHHHHHHHHHhc-----cCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhH
Q 007648 435 TYKDIANARVIFDKAVQV-----NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQM 509 (594)
Q Consensus 435 ~~~~~~~A~~~~~kal~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 509 (594)
.+|++++|+..+++++.+ .|++|.+. ..+..++..+..+|++++|..++++++...-. ..|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~-~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~-------~lg~----- 365 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQL-KVLDCAMDACINLGLLEEALFYGTRTMEPYRI-------FFPG----- 365 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-------HSCS-----
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHH-HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHH-------HcCC-----
Confidence 679999999999999974 57777544 56777888888999999999999999975320 0000
Q ss_pred HhhccH---hhHHHHHHHHHHhCChHHHHHHHHHHHh-----ccCCchHHHH---HHHHHH
Q 007648 510 KLHKSL---RLWTFYVDLEESLGNLESTRAVYERILD-----LRIATPQIII---NYALLL 559 (594)
Q Consensus 510 ~~~~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~-----~~P~~~~~~~---~~~~~~ 559 (594)
++| ..+..++.++..+|++++|...|++|++ ..|++|.+.. +++.+.
T Consensus 366 ---~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 366 ---SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD 423 (429)
T ss_dssp ---SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred ---CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 122 3478889999999999999999999998 4688887654 444444
No 224
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.50 E-value=0.00041 Score=71.15 Aligned_cols=92 Identities=10% Similarity=0.073 Sum_probs=75.8
Q ss_pred CCchhHHHHHHHHHhc----cCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----cCCChhhHHHHHHHH
Q 007648 397 GNPTKQILTYTEAVRT----VDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQV-----NYKTVDHLASIWCEW 467 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~-----~p~~~~~~~~~~~~~ 467 (594)
|++++|...|++++.. +.|++. .....+.++|..+..+|++++|...++++|.+ .|++|++. ..+..+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp--~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a-~~l~nL 388 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNV--YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVA-SMWLKL 388 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHH-HHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhch--HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHH-HHHHHH
Confidence 6889999999999974 233321 25677889999999999999999999999975 47777443 467888
Q ss_pred HHHHHhcCChHHHHHHHHHHhcCC
Q 007648 468 AEMELRHKNFKGALELMRRATAEP 491 (594)
Q Consensus 468 ~~~~~~~~~~~~A~~~~~~al~~~ 491 (594)
|.++..+|++++|..+|++|+++.
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHH
Confidence 999999999999999999999863
No 225
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.44 E-value=0.0076 Score=63.13 Aligned_cols=166 Identities=9% Similarity=-0.011 Sum_probs=122.1
Q ss_pred hhhHHHHHHHHHhhhhhchhhhhhhhhccCCCChHHHHHHHHHhc-----------CCchhHHHHHHHHHhc-cCCCccc
Q 007648 352 VKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE-----------GNPTKQILTYTEAVRT-VDPMKAV 419 (594)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~-----------~~~~~a~~~y~~Ai~~-~~~~~~~ 419 (594)
.+++..++..|+++.. -. -+.|.-.|..++.... ++.++|..+|++.... +.|
T Consensus 39 ~G~~~~A~~lf~~M~~----------~G-v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P---- 103 (501)
T 4g26_A 39 KGDVLEALRLYDEARR----------NG-VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP---- 103 (501)
T ss_dssp SCCHHHHHHHHHHHHH----------HT-CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC----
T ss_pred CCCHHHHHHHHHHHHH----------cC-CCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC----
Confidence 4567778888888531 11 2345667777666542 1367899999987763 444
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcC--CchhH
Q 007648 420 GKPHTLWVAFAKLYETYKDIANARVIFDKAVQV--NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE--PSVEV 495 (594)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~ 495 (594)
+...|..+...+.+.|+.++|..+|++..+. .|+. ..|..+...+.+.|+.++|.++|++-.+. .|
T Consensus 104 --d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-----~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P--- 173 (501)
T 4g26_A 104 --NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL-----RSYGPALFGFCRKGDADKAYEVDAHMVESEVVP--- 173 (501)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC---
T ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc-----ceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---
Confidence 4567888888899999999999999998764 4544 45666777777899999999999987754 55
Q ss_pred hhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHh--ccCCchHHHHHHHHHHHH
Q 007648 496 RRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD--LRIATPQIIINYALLLEV 561 (594)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~~~~~~~~ 561 (594)
+...|..+++.+.+.|+.++|.+++++... ..|+. .++..+...+..
T Consensus 174 ------------------d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~-~T~~~l~~~F~s 222 (501)
T 4g26_A 174 ------------------EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSK-STFDMIEEWFKS 222 (501)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCH-HHHHHHHHHHHS
T ss_pred ------------------CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCH-HHHHHHHHHHhc
Confidence 457789999999999999999999999876 44543 555555554443
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.42 E-value=0.00078 Score=53.97 Aligned_cols=71 Identities=11% Similarity=0.017 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC---hhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCch
Q 007648 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKT---VDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSV 493 (594)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 493 (594)
+.-.+.+|..+.+.|++..|...|++|++..+.. ......++..++..+.+.|+++.|...++++++..|+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 3445667777777777777777777777743111 1123367777777777777777777777777777774
No 227
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.31 E-value=0.0035 Score=56.59 Aligned_cols=122 Identities=13% Similarity=0.210 Sum_probs=75.0
Q ss_pred chHhHHHHhh-C--CCCHHHHHHHHHHHH----cCC-h-hHHHHHHHHHHHhCCCC---------hHHHHHHHHHHHHhc
Q 007648 13 DLLYEEELLR-N--PFSLKLWWRYLVAKR----EAP-F-KKRFVIYERALKALPGS---------YKLWHAYLIERLSIV 74 (594)
Q Consensus 13 ~~~~e~~l~~-~--P~~~~~w~~~~~~~~----~~~-~-~~a~~~~e~al~~~P~s---------~~lW~~~~~~~~~~~ 74 (594)
...||..|.. + ..=.+.|.+||++.. .|. . .....+++++++.+-++ +.+|+.|+++.
T Consensus 55 r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~---- 130 (223)
T 4aez_C 55 RMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYI---- 130 (223)
T ss_dssp HHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHcc----
Confidence 4567777754 1 222477888888664 222 1 23556777777765432 46777776542
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 007648 75 KNLPITHPEYETLNNTFERALVTM--HKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVE 149 (594)
Q Consensus 75 ~~~~~~~~~~~~A~~~~~~al~~~--P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~ 149 (594)
+....+|..+.... -..+.+|..+|.++...|++.+|..+|+.+++....+ ...+-..+..|..
T Consensus 131 ----------~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P-~~rL~~~~~~F~~ 196 (223)
T 4aez_C 131 ----------DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP-FLRFQQKYQQFTH 196 (223)
T ss_dssp ----------SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS-HHHHHHHHHHHHH
T ss_pred ----------CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-HHHHHHHHHHHHH
Confidence 24456666666543 4666777788888877788888888888887765443 2445555555543
No 228
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.0071 Score=53.68 Aligned_cols=124 Identities=15% Similarity=0.213 Sum_probs=92.0
Q ss_pred hhHHHHHHHHHHHh---CCCC-hHHHHHHHHHHHHhccCCCCCchhH---HHHH-HHHHHHHHhc---------CCChHH
Q 007648 42 FKKRFVIYERALKA---LPGS-YKLWHAYLIERLSIVKNLPITHPEY---ETLN-NTFERALVTM---------HKMPRI 104 (594)
Q Consensus 42 ~~~a~~~~e~al~~---~P~s-~~lW~~~~~~~~~~~~~~~~~~~~~---~~A~-~~~~~al~~~---------P~~~~l 104 (594)
....+..||+.|.. .-++ .++|..|+.+..... ..|.- ..-. .+++++++.. |.-.++
T Consensus 8 l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~y-----P~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLkl 82 (202)
T 3esl_A 8 LNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSY-----IEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKI 82 (202)
T ss_dssp HHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHH-----HHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhC-----CCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHH
Confidence 45678889999987 2233 599999999975441 12221 2344 7899999853 455579
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCC
Q 007648 105 WIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSH 172 (594)
Q Consensus 105 w~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~ 172 (594)
|+.|+.+. ..++...++.+|.-.....=+.....+|..++.+++..|+. .+|.++|+.+++..-.-
T Consensus 83 Wl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~-~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 83 WIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFF-LEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTTCBS
T ss_pred HHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCcc
Confidence 99999987 23446788899988877654545678899999999999999 99999999999876443
No 229
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=97.21 E-value=0.0041 Score=52.71 Aligned_cols=119 Identities=12% Similarity=0.134 Sum_probs=88.5
Q ss_pred hhHHHHHHHHHHHhCCC-C-hHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhc---------CCChHHHHHHHH
Q 007648 42 FKKRFVIYERALKALPG-S-YKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTM---------HKMPRIWIMYLE 110 (594)
Q Consensus 42 ~~~a~~~~e~al~~~P~-s-~~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---------P~~~~lw~~y~~ 110 (594)
...+++.||..|+.+.. + .++|..|+.+..+.. ..|. ..-..+++++++.. |.-.++|+.|+.
T Consensus 6 ~~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~-----P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~ 79 (152)
T 4a1g_A 6 PENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENF-----PENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAE 79 (152)
T ss_dssp HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTC-----SSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHc-----CCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHH
Confidence 35677889999987633 2 599999999975542 2333 34678899998864 444579999997
Q ss_pred HHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCH
Q 007648 111 TLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHI 173 (594)
Q Consensus 111 ~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~ 173 (594)
+. +.++.+|.-.....=+.....+|..++.+++..|+. .+|.++|+.+++..-.-.
T Consensus 80 ~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~-~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 80 YN------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGEL-QHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp TB------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTTCBSH
T ss_pred hc------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCccH
Confidence 63 237888887776544444578899999999999999 999999999998765444
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.13 E-value=0.0089 Score=48.92 Aligned_cols=99 Identities=13% Similarity=0.044 Sum_probs=72.9
Q ss_pred CCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCCh---HHHHHHHHHHhcCC-chhHhhhhhccCChhhhHHhh
Q 007648 437 KDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNF---KGALELMRRATAEP-SVEVRRRVAADGNEPVQMKLH 512 (594)
Q Consensus 437 ~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~---~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~ 512 (594)
..+..++.-|.+.+...+.++ ..-+.|+-.+.+..+. .+++.+++..++.. |..
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~----~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~------------------ 72 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSK----STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE------------------ 72 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCH----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH------------------
T ss_pred HHHHHHHHHHHHHhccCCCcH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcch------------------
Confidence 346778888888888777777 6677777777666554 45999999999887 631
Q ss_pred ccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHH
Q 007648 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALL 558 (594)
Q Consensus 513 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~ 558 (594)
.-...+.++-...++|++++|++..+..|+..|++.++..-...+
T Consensus 73 -~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 73 -QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 113344455556689999999999999999999999887644433
No 231
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.09 E-value=0.0022 Score=65.80 Aligned_cols=92 Identities=7% Similarity=-0.066 Sum_probs=75.4
Q ss_pred CCchhHHHHHHHHHhc----cCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----cCCChhhHHHHHHHH
Q 007648 397 GNPTKQILTYTEAVRT----VDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQV-----NYKTVDHLASIWCEW 467 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~-----~p~~~~~~~~~~~~~ 467 (594)
|++++|...|++++.. +.|++. .....+.++|..+..+|++++|...+++++.+ .|++|.+. ..+..+
T Consensus 301 g~~~~a~~~~~~~L~~~~~~lg~~h~--~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a-~~l~nL 377 (429)
T 3qwp_A 301 WKWEQVLAMCQAIISSNSERLPDINI--YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG-VQVMKV 377 (429)
T ss_dssp TCHHHHHHHHHHHHTCSSCCCCTTSH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH-HHHHHH
T ss_pred ccHHHHHHHHHHHHHhccCcCCccch--HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH-HHHHHH
Confidence 7899999999999974 233221 25677889999999999999999999999974 47777443 567888
Q ss_pred HHHHHhcCChHHHHHHHHHHhcCC
Q 007648 468 AEMELRHKNFKGALELMRRATAEP 491 (594)
Q Consensus 468 ~~~~~~~~~~~~A~~~~~~al~~~ 491 (594)
|.++..+|++++|..+|++|+++.
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999763
No 232
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=96.63 E-value=0.015 Score=49.97 Aligned_cols=115 Identities=7% Similarity=0.110 Sum_probs=80.6
Q ss_pred HHHHHHHHhCC-CC-hHHHHHHHHHHHHhccCCCCCchhH-HHHHHHHHHHHHhc---------CCChHHHHHHHHHHHh
Q 007648 47 VIYERALKALP-GS-YKLWHAYLIERLSIVKNLPITHPEY-ETLNNTFERALVTM---------HKMPRIWIMYLETLTS 114 (594)
Q Consensus 47 ~~~e~al~~~P-~s-~~lW~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~al~~~---------P~~~~lw~~y~~~~~~ 114 (594)
+.||..|..+- ++ .++|..||.+..... ..|.. ..-..+++++++.. |.-..+|+.|+.+.
T Consensus 4 ~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~-----p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~-- 76 (164)
T 2wvi_A 4 RAFEYEIRFYTGNDPLDVWDRYISWTEQNY-----PQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC-- 76 (164)
T ss_dssp HHHHHHCCCCCSSCTHHHHHHHHHHHHHHC-----CC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHHC-----cCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc--
Confidence 45666665432 12 699999999976652 22221 23466888988864 44457999999874
Q ss_pred cccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCH
Q 007648 115 QKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHI 173 (594)
Q Consensus 115 ~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~ 173 (594)
++ ++.+|.-.....=+.....+|..++.+++..|+. .+|.++|+.+++..-.-.
T Consensus 77 -~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~-~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 77 -NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENF-RKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp -SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTTCBSH
T ss_pred -CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCcH
Confidence 33 6677777666544444578899999999999999 999999999998764443
No 233
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.45 E-value=0.022 Score=51.47 Aligned_cols=120 Identities=17% Similarity=0.253 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhccCCCCCchh-HHHHHHHHHHHHHhc---------CCChHHHHHH
Q 007648 42 FKKRFVIYERALKAL---PGSYKLWHAYLIERLSIVKNLPITHPE-YETLNNTFERALVTM---------HKMPRIWIMY 108 (594)
Q Consensus 42 ~~~a~~~~e~al~~~---P~s~~lW~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~---------P~~~~lw~~y 108 (594)
.+..+..||..|... .+=.++|..|+.+........ +. -..-..+++++++.+ |.-.++|+.|
T Consensus 51 l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g----~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Y 126 (223)
T 4aez_C 51 LQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQG----ETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQY 126 (223)
T ss_dssp HHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTC----CCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCC----CcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHH
Confidence 456788899988762 222699999999976653211 11 123557888888864 4445799999
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCC
Q 007648 109 LETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSH 172 (594)
Q Consensus 109 ~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~ 172 (594)
+.+ . +.++.+|.-.....=+..+..+|..++.+++..|++ .+|.++|+.+++..-.-
T Consensus 127 a~~---~---~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~-~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 127 VNY---I---DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLF-QKADEVYQKGKRMKAKP 183 (223)
T ss_dssp HTT---C---SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHTCBS
T ss_pred HHc---c---CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCcc
Confidence 975 2 356677877776544444578899999999999999 99999999999876443
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.11 Score=56.33 Aligned_cols=135 Identities=7% Similarity=-0.087 Sum_probs=86.1
Q ss_pred hcCC-HHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCC-hHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhh
Q 007648 435 TYKD-IANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN-FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLH 512 (594)
Q Consensus 435 ~~~~-~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 512 (594)
..|+ ++.|+.++++..+.+|...-.+ ...++.+....++ =-+|.+++-++++...... ..+ -........-.-
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~~~---~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~-~~l-~~~~~~~~~~~~ 334 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDIYY---KTAMITILDHIETKELDMITILNETLDPLLSLL-NDL-PPRDADSARLMN 334 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHHHH---HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHH-HTC-SSCCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhHHH---HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhh-hhh-cccccccccccC
Confidence 3555 6889999999999998774111 1122222222222 2346666766664211000 000 000000000001
Q ss_pred ccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhh---hcccC
Q 007648 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFL---LHVPF 574 (594)
Q Consensus 513 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~---~~~~~ 574 (594)
.+..+...-++|+...|+++-|.++-.+|+..-|.+-..|..|+.+|...|+|+.|| +--|+
T Consensus 335 ~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 335 CMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred cchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 233466667899999999999999999999999999999999999999999999997 66665
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.88 E-value=0.079 Score=43.30 Aligned_cols=91 Identities=11% Similarity=0.012 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccH---HHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHcCCchHH
Q 007648 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFI---TKARRTFDRALCAL-PVTQHDRIWEIYLRFVEQEGIPIET 157 (594)
Q Consensus 82 ~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~---~~A~~~~~ral~~~-p~~~~~~~w~~~~~~~~~~~~~~~~ 157 (594)
.....++..|.+++...+.+...-+.|+..+++.++. .....+++..+... |.. ..+....++....++|++ .+
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~-~Rd~lY~LAvg~yklg~Y-~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE-QRDYVFYLAVGNYRLKEY-EK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH-HHHHHHHHHHHHHHTTCH-HH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcch-HHHHHHHHHHHHHHhhhH-HH
Confidence 5567888999999998899999999999999997754 45888888888765 422 123333344455689999 99
Q ss_pred HHHHHHHHHhhCCCCHH
Q 007648 158 SLRVYRRYLKYDPSHIE 174 (594)
Q Consensus 158 a~~~~~~~l~~~p~~~~ 174 (594)
|++..+.+|+.+|++..
T Consensus 93 A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHhCCCCHH
Confidence 99999999999999975
No 236
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.03 E-value=1.3 Score=44.23 Aligned_cols=101 Identities=13% Similarity=0.162 Sum_probs=79.3
Q ss_pred HHHHHh--cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc---CCChhhHHHHH
Q 007648 390 RRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVN---YKTVDHLASIW 464 (594)
Q Consensus 390 ~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~---p~~~~~~~~~~ 464 (594)
.++.++ .|++.+|...+.+....+..........+++..-.+++...+++.+++..|.+|.... +.+|.....+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 455555 4899999999999887654422112256778888888889999999999999998742 46677777888
Q ss_pred HHHHHHHH-hcCChHHHHHHHHHHhcC
Q 007648 465 CEWAEMEL-RHKNFKGALELMRRATAE 490 (594)
Q Consensus 465 ~~~~~~~~-~~~~~~~A~~~~~~al~~ 490 (594)
..-|.+.+ ..+++..|...|-.+.+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 88888999 899999999999988743
No 237
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.38 E-value=0.13 Score=43.98 Aligned_cols=131 Identities=13% Similarity=0.110 Sum_probs=80.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc---CC--ChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCch---hH--hh
Q 007648 428 AFAKLYETYKDIANARVIFDKAVQVN---YK--TVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSV---EV--RR 497 (594)
Q Consensus 428 ~~a~~~~~~~~~~~A~~~~~kal~~~---p~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~--~~ 497 (594)
.-..-....|.++.|+-+...++... |+ .|.....+.+.+|+.+...|++.+|...|++|++.... .. +.
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 33444557889999999999877643 43 34444457888899999999999999999999865321 00 00
Q ss_pred hhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 007648 498 RVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLL 559 (594)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~ 559 (594)
-++.....+.....+.+..+-..-+..+..+|++++|+..++. |...-.+|.+-..+|++|
T Consensus 105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~-Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG-IPSRQRTPKINMLLANLY 165 (167)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT-SCGGGCCHHHHHHHHHHC
T ss_pred cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc-CCchhcCHHHHHHHHHHh
Confidence 0000000000001123445556667777888888888888776 333346677767777665
No 238
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.30 E-value=0.73 Score=37.77 Aligned_cols=33 Identities=9% Similarity=0.035 Sum_probs=19.9
Q ss_pred HHHHHHHhCChHHHHHHHHHHHhccCCchHHHH
Q 007648 521 YVDLEESLGNLESTRAVYERILDLRIATPQIII 553 (594)
Q Consensus 521 ~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~ 553 (594)
++--..++|++++|++..++.|+..|+|.++..
T Consensus 84 LAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 84 LTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 333344666666666666666666666665554
No 239
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.86 E-value=0.27 Score=42.07 Aligned_cols=97 Identities=8% Similarity=-0.104 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHh
Q 007648 464 WCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543 (594)
Q Consensus 464 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 543 (594)
++..+..+...|.++.|+-+...++....++. ...++. ....+...+++.+...|+|-.|...|++||+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~-------~~~sp~----~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNP-------ELFSPP----QKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHST-------TSSCHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCc-------ccccHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 44555566788999999999998776643210 000000 1235678899999999999999999999987
Q ss_pred cc---CCc----------------------hHHHHHHHHHHHHhchhhhhhhc
Q 007648 544 LR---IAT----------------------PQIIINYALLLEVWTLLHVFLLH 571 (594)
Q Consensus 544 ~~---P~~----------------------~~~~~~~~~~~~~~g~~~~a~~~ 571 (594)
.. |.+ .++.++.+.++.+.|++++|+..
T Consensus 92 ~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~ 144 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAI 144 (167)
T ss_dssp HHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHH
Confidence 31 222 26888999999999999999843
No 240
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.70 E-value=0.57 Score=38.94 Aligned_cols=75 Identities=7% Similarity=-0.001 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhcC---ChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHH
Q 007648 462 SIWCEWAEMELRHK---NFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVY 538 (594)
Q Consensus 462 ~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 538 (594)
..-+.|+-.+.+.. +..+++.+++..+...|..- -.....++--..++|++++|++..
T Consensus 40 ~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~-------------------RdcLYyLAvg~ykl~~Y~~Ar~y~ 100 (144)
T 1y8m_A 40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR-------------------RECLYYLTIGCYKLGEYSMAKRYV 100 (144)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTH-------------------HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccch-------------------hHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44445554444433 34567777777777666310 122222333345777778888877
Q ss_pred HHHHhccCCchHHHHHH
Q 007648 539 ERILDLRIATPQIIINY 555 (594)
Q Consensus 539 ~~al~~~P~~~~~~~~~ 555 (594)
+..|+..|+|.++..-.
T Consensus 101 d~lL~~eP~n~QA~~Lk 117 (144)
T 1y8m_A 101 DTLFEHERNNKQVGALK 117 (144)
T ss_dssp HHHHHTCCCCHHHHHHH
T ss_pred HHHHhcCCCcHHHHHHH
Confidence 87777777777666533
No 241
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.41 E-value=2.1 Score=47.17 Aligned_cols=85 Identities=11% Similarity=-0.055 Sum_probs=45.1
Q ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhCCCCHHHHHH
Q 007648 99 HKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIE 178 (594)
Q Consensus 99 P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~ 178 (594)
.+++..|..+|+...++++++.|.++|.++=. +..+..++...++. +...++-+.+.. ... ......
T Consensus 678 ~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~-~~~~~~~~~a~~-~~~-~~~A~~ 744 (814)
T 3mkq_A 678 ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNK-EGLVTLAKDAET-TGK-FNLAFN 744 (814)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCH-HHHHHHHHHHHH-TTC-HHHHHH
T ss_pred hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCH-HHHHHHHHHHHH-cCc-hHHHHH
Confidence 35677888888888888888888888876411 12222333334444 333333222222 111 112223
Q ss_pred HHHhcccHHHHHHHHHHh
Q 007648 179 FLVKSKLWQEAAERLASV 196 (594)
Q Consensus 179 ~~~~~~~~~~a~~~~~~~ 196 (594)
++...|++++|.++|.++
T Consensus 745 ~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 745 AYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHTCHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHc
Confidence 455567777777776554
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.12 E-value=1.7 Score=35.56 Aligned_cols=92 Identities=7% Similarity=-0.108 Sum_probs=69.1
Q ss_pred CchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcc---cHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchH
Q 007648 80 THPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQK---FITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIE 156 (594)
Q Consensus 80 ~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~---~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~ 156 (594)
...+....++.|++=+ ...-++..-+.|+-.+++.+ +...+..+++..++..|.. ..+.+.-++.-..++|++ +
T Consensus 19 ~~eeL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~-~Rd~LYyLAvg~yklgdY-~ 95 (134)
T 3o48_A 19 YPQQLEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEY-S 95 (134)
T ss_dssp CHHHHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHTCH-H
T ss_pred CHHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch-hHHHHHHHHHHHHHhhhH-H
Confidence 3455666777776644 33346789999999998865 4567889999999888853 244444455555688999 9
Q ss_pred HHHHHHHHHHhhCCCCHH
Q 007648 157 TSLRVYRRYLKYDPSHIE 174 (594)
Q Consensus 157 ~a~~~~~~~l~~~p~~~~ 174 (594)
+|++..+.+++.+|++..
T Consensus 96 ~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 96 MAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp HHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHhhCCCCHH
Confidence 999999999999999974
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.38 E-value=2.8 Score=34.82 Aligned_cols=92 Identities=7% Similarity=-0.113 Sum_probs=68.5
Q ss_pred CchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcc---cHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchH
Q 007648 80 THPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQK---FITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIE 156 (594)
Q Consensus 80 ~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~---~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~ 156 (594)
...+....+.-|++-+. .+-++..-+.|+-.+++.. +......+++..+...|... .+....++.-..++|++ +
T Consensus 18 ~~eeL~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~-RdcLYyLAvg~ykl~~Y-~ 94 (144)
T 1y8m_A 18 YPQQLEILRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR-RECLYYLTIGCYKLGEY-S 94 (144)
T ss_dssp CHHHHHHHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTH-HHHHHHHHHHHHTTTCH-H
T ss_pred CHHHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccch-hHHHHHHHHHHHHhhhH-H
Confidence 44566677777776533 3667899999999999876 45778889999999888642 23222233344588999 9
Q ss_pred HHHHHHHHHHhhCCCCHH
Q 007648 157 TSLRVYRRYLKYDPSHIE 174 (594)
Q Consensus 157 ~a~~~~~~~l~~~p~~~~ 174 (594)
+|++..+.+|+.+|++..
T Consensus 95 ~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 95 MAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp HHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHhcCCCcHH
Confidence 999999999999999974
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.38 E-value=0.78 Score=49.86 Aligned_cols=108 Identities=10% Similarity=0.007 Sum_probs=72.5
Q ss_pred HhHHHHhhCCCCHH-HHHHHHHHHH--cCChhHHHHHHHHHHHh--------C----------CCChHHHHHHHHHHHHh
Q 007648 15 LYEEELLRNPFSLK-LWWRYLVAKR--EAPFKKRFVIYERALKA--------L----------PGSYKLWHAYLIERLSI 73 (594)
Q Consensus 15 ~~e~~l~~~P~~~~-~w~~~~~~~~--~~~~~~a~~~~e~al~~--------~----------P~s~~lW~~~~~~~~~~ 73 (594)
.+|+...++|...- .-..++.... ...--+|.++..++++. . |.+..+...-++++
T Consensus 271 ~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FL--- 347 (754)
T 4gns_B 271 YLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFL--- 347 (754)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHH---
Confidence 56666677885443 2233333221 12223455566666542 1 22234555556666
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 007648 74 VKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPV 134 (594)
Q Consensus 74 ~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~ 134 (594)
..+|+++-|..+-++|+...|.+..-|..++++++..|+++.|.-.++ .+|-
T Consensus 348 -----l~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLN----ScPm 399 (754)
T 4gns_B 348 -----LNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAIN----SMPR 399 (754)
T ss_dssp -----HHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH----HSCC
T ss_pred -----hccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHh----cCCC
Confidence 345899999999999999999999999999999999999999987655 4774
No 245
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.45 E-value=3 Score=38.80 Aligned_cols=111 Identities=16% Similarity=0.107 Sum_probs=74.7
Q ss_pred HhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhH-----hhhh--------h
Q 007648 434 ETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEV-----RRRV--------A 500 (594)
Q Consensus 434 ~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~--------~ 500 (594)
.+.|+++.|++.++..++.+|.|. ++-..+.+++.=.|++++|.+-++-+.+++|+.. |..+ .
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da----~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~ 83 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDA----SLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 83 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHH
Confidence 367888999999999999999998 7777777777778899999999999988888632 2111 0
Q ss_pred -ccCChhhhHHhhccHhhHHHH---HHHHHHhCChHHHHHHHHHHHhccCCchH
Q 007648 501 -ADGNEPVQMKLHKSLRLWTFY---VDLEESLGNLESTRAVYERILDLRIATPQ 550 (594)
Q Consensus 501 -~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~A~~~~~~al~~~P~~~~ 550 (594)
|.|... +.++..+.-|... +......|+.++|...=++|++.-|..+-
T Consensus 84 vfaG~~~--P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 84 FAQGAAT--AKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HTTSCCC--EECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHcCCCC--CCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 222110 0111122223222 22334569999999999999998887654
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.67 E-value=3.5 Score=41.17 Aligned_cols=98 Identities=13% Similarity=0.098 Sum_probs=50.1
Q ss_pred cCChhHHHHHHHHHHHhCCCC--h----HHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 007648 39 EAPFKKRFVIYERALKALPGS--Y----KLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETL 112 (594)
Q Consensus 39 ~~~~~~a~~~~e~al~~~P~s--~----~lW~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~ 112 (594)
.++.+.+...+++|+..+.-. . .-|..-.. ....+.+-.+ ...++..+
T Consensus 128 ~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r----------------~~l~~~~~~a----------~~~~~~~~ 181 (388)
T 2ff4_A 128 AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFA----------------TALVEDKVLA----------HTAKAEAE 181 (388)
T ss_dssp TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHH----------------HHHHHHHHHH----------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHH----------------HHHHHHHHHH----------HHHHHHHH
Confidence 478889999999999987321 1 12432111 0111111111 22344444
Q ss_pred HhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 007648 113 TSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRY 165 (594)
Q Consensus 113 ~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~ 165 (594)
...|++..|...+.+++..+|.+ +.+|..+...+...|+. .+|.+.|+++
T Consensus 182 l~~g~~~~a~~~l~~~~~~~P~~--E~~~~~lm~al~~~Gr~-~~Al~~y~~~ 231 (388)
T 2ff4_A 182 IACGRASAVIAELEALTFEHPYR--EPLWTQLITAYYLSDRQ-SDALGAYRRV 231 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHTTTCH-HHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCH-HHHHHHHHHH
Confidence 55555555555555555555543 44555555555555555 5555555443
No 247
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=88.49 E-value=3.5 Score=46.09 Aligned_cols=94 Identities=10% Similarity=-0.030 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-----ccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhc--CCchhHhh
Q 007648 425 LWVAFAKLYETYKDIANARVIFDKAVQ-----VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATA--EPSVEVRR 497 (594)
Q Consensus 425 ~~~~~a~~~~~~~~~~~A~~~~~kal~-----~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~ 497 (594)
-+..+...+.+.|+.++|..+|.+--+ ..|+- ..|..++..+.+.|++++|.++|++-.+ ..|
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pdv-----vTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P----- 198 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTL-----DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP----- 198 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCH-----HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-----
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCH-----hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-----
Confidence 345556666777888888888755322 34433 4555666666677888888888876654 345
Q ss_pred hhhccCChhhhHHhhccHhhHHHHHHHHHHhCCh-HHHHHHHHHHHhc
Q 007648 498 RVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNL-ESTRAVYERILDL 544 (594)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~A~~~~~~al~~ 544 (594)
|...|...++-+.+.|+. ++|.++++.+...
T Consensus 199 ----------------DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 199 ----------------DLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp ----------------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ----------------cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 345556666666677764 6677777777763
No 248
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=87.99 E-value=7.4 Score=42.71 Aligned_cols=43 Identities=19% Similarity=0.090 Sum_probs=31.2
Q ss_pred cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007648 396 EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKA 449 (594)
Q Consensus 396 ~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ka 449 (594)
.|+++.|.++.+. ++ ....|-.+|+...+.|+++.|..+|.++
T Consensus 665 ~~~~~~A~~~~~~----~~-------~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 665 VGQLTLARDLLTD----ES-------AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HTCHHHHHHHHTT----CC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHh----hC-------cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3666766665422 11 3578888898888889999998888876
No 249
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=87.96 E-value=11 Score=32.59 Aligned_cols=44 Identities=16% Similarity=0.116 Sum_probs=28.1
Q ss_pred hcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007648 435 TYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRA 487 (594)
Q Consensus 435 ~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 487 (594)
+.|+++.|.++.+.. ++. ..|-.+|+.-+++|+++-|...|+++
T Consensus 17 ~lg~l~~A~e~a~~l-----~~~----~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-----NDS----ITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH-----CCH----HHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh-----CCH----HHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 466666666665543 444 56777776666667776666666665
No 250
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.58 E-value=7.5 Score=38.66 Aligned_cols=101 Identities=10% Similarity=-0.030 Sum_probs=73.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc--cCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCC-----chhHhhhh
Q 007648 427 VAFAKLYETYKDIANARVIFDKAVQV--NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEP-----SVEVRRRV 499 (594)
Q Consensus 427 ~~~a~~~~~~~~~~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~ 499 (594)
..+|.++...|++.+|.+++.+.++. ..++...+.+++..-++++...||+.+++..+.+|.... |...
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i---- 178 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV---- 178 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH----
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH----
Confidence 47899999999999999999998873 334556677888888888888999999999999886542 1100
Q ss_pred hccCChhhhHHhhccHhhHHHHHHHHH-HhCChHHHHHHHHHHHhcc
Q 007648 500 AADGNEPVQMKLHKSLRLWTFYVDLEE-SLGNLESTRAVYERILDLR 545 (594)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~ 545 (594)
-..+...-|.++. ..|+|.+|...|=.++...
T Consensus 179 --------------~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 179 --------------QGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp --------------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 1233455556666 6788888777777776533
No 251
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.49 E-value=3.2 Score=42.09 Aligned_cols=104 Identities=14% Similarity=0.148 Sum_probs=81.1
Q ss_pred HHHHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cCCChhhHH
Q 007648 386 EQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQV--NYKTVDHLA 461 (594)
Q Consensus 386 ~~~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~--~p~~~~~~~ 461 (594)
.++..+|.++. |+++.|..+|.++...+... +.-.++++....+....+++..+...+.++-.. ...++...+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~---~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~ 208 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAIST---GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN 208 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC---CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 45667777774 99999999999988765332 235788999999999999999999999999764 344565555
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcCCc
Q 007648 462 SIWCEWAEMELRHKNFKGALELMRRATAEPS 492 (594)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 492 (594)
.+....|.+.+..+++..|...|-.+.....
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 6666677777788999999999988875543
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.00 E-value=4.7 Score=40.19 Aligned_cols=62 Identities=11% Similarity=0.019 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 007648 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATA 489 (594)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 489 (594)
.+...++..+...|++.++...+.+++..+|-+- .+|..+...+.+.|+..+|...|++.-+
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E----~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYRE----PLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444566677789999999999999999999997 8999999999999999999999887643
No 253
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=84.71 E-value=9.6 Score=32.99 Aligned_cols=99 Identities=6% Similarity=-0.022 Sum_probs=64.0
Q ss_pred CchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHH
Q 007648 80 THPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSL 159 (594)
Q Consensus 80 ~~~~~~~A~~~~~~al~~~P~~~~lw~~y~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~ 159 (594)
..|+++.|..+.+.. ++...|..++.....+|+++-|...|.++ .+ +..+..++...|+. +...
T Consensus 17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~----~D------~~~L~~Ly~~tg~~-e~L~ 80 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ----HS------FDKLSFLYLVTGDV-NKLS 80 (177)
T ss_dssp HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT----TC------HHHHHHHHHHHTCH-HHHH
T ss_pred hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh----CC------HHHHHHHHHHhCCH-HHHH
Confidence 458889998887655 78899999999999999999999999874 21 22333344455665 4444
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHhcccHHHHHHHHHHh
Q 007648 160 RVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASV 196 (594)
Q Consensus 160 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~ 196 (594)
+.-+.+... -+ ...-...+...|+++++.++|.+.
T Consensus 81 kla~iA~~~-g~-~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 81 KMQNIAQTR-ED-FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHT-TC-HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHC-cc-HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 333322211 12 212234455678888888887554
No 254
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.54 E-value=16 Score=37.09 Aligned_cols=103 Identities=12% Similarity=0.122 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhc----CCc-hhH
Q 007648 423 HTLWVAFAKLYETYKDIANARVIFDKAVQV--NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATA----EPS-VEV 495 (594)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p-~~~ 495 (594)
..+...++.+++..|++.+|..++.....- ...+...+.++++.-+++....+++.+|..++.++.. ..+ .+.
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l 216 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL 216 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence 356678899999999999999999997652 2344445667888888888889999999999998742 211 111
Q ss_pred hhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHh
Q 007648 496 RRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543 (594)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 543 (594)
-..+....|.+....++|.+|-+.|-.++.
T Consensus 217 ------------------k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 217 ------------------KLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp ------------------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 013344555555556666666666666555
No 255
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=84.38 E-value=4.9 Score=44.93 Aligned_cols=86 Identities=8% Similarity=-0.119 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHh-----cCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHH
Q 007648 463 IWCEWAEMELRHKNFKGALELMRRAT-----AEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAV 537 (594)
Q Consensus 463 ~~~~~~~~~~~~~~~~~A~~~~~~al-----~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 537 (594)
.+..+...+.+.|++++|..+|.+.- ...| |...|..+++-+.+.|++++|.++
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P---------------------dvvTYNtLI~Glck~G~~~eA~~L 187 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL---------------------TLDMYNAVMLGWARQGAFKELVYV 187 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC---------------------CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC---------------------CHhHHHHHHHHHHhCCCHHHHHHH
Confidence 46667777788999999999996643 2456 467889999999999999999999
Q ss_pred HHHHHhcc-CCchHHHHHHHHHHHHhchh-hhhh
Q 007648 538 YERILDLR-IATPQIIINYALLLEVWTLL-HVFL 569 (594)
Q Consensus 538 ~~~al~~~-P~~~~~~~~~~~~~~~~g~~-~~a~ 569 (594)
|++..... .-|..++..+...+.+.|.. ++|.
T Consensus 188 f~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~ 221 (1134)
T 3spa_A 188 LFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIE 221 (1134)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHH
Confidence 99998743 23557888888899888874 5554
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.15 E-value=6.7 Score=36.44 Aligned_cols=62 Identities=18% Similarity=0.150 Sum_probs=54.4
Q ss_pred HHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchH
Q 007648 471 ELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550 (594)
Q Consensus 471 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~ 550 (594)
.++.|++++|++..+..++..|. |...-..+.+++.-.|+++.|.+-++-+.+++|+...
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~--------------------da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPK--------------------DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT--------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCc--------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 35789999999999999999995 5677788888999999999999999999999998765
Q ss_pred HH
Q 007648 551 II 552 (594)
Q Consensus 551 ~~ 552 (594)
.-
T Consensus 67 ~a 68 (273)
T 1zbp_A 67 GA 68 (273)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 257
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=81.43 E-value=2.6 Score=43.46 Aligned_cols=54 Identities=11% Similarity=0.001 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhccCCchHHHHHHHHHHHHhchhhhhh
Q 007648 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEVWTLLHVFL 569 (594)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~~~~~~~~~g~~~~a~ 569 (594)
.....+||+..-.+..+.|+.+|.+|+.+.|+++..+.++|-+....|+.-+|+
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~ 206 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI 206 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHH
Confidence 456788999888899999999999999999999999999999999888777765
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.07 E-value=4.8 Score=40.76 Aligned_cols=108 Identities=14% Similarity=0.113 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhcc
Q 007648 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAAD 502 (594)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 502 (594)
..++..+|.++.+.|+++.|.++|.++....... .+..++++..+++....+++..|...+.++-......
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~-~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~-------- 201 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIST-GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG-------- 201 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC-CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC--------
Confidence 4567889999999999999999999998855443 2344788888888888999999999999986442210
Q ss_pred CChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q 007648 503 GNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR 545 (594)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 545 (594)
++.... ..+....|.+....++|.+|-+.|-.++...
T Consensus 202 ~d~~~~------~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 202 GDWERR------NRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp CCTHHH------HHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred CCHHHH------HHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 000000 1333444555567799999988888877643
No 259
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=80.54 E-value=6.8 Score=40.35 Aligned_cols=78 Identities=15% Similarity=0.103 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHh
Q 007648 464 WCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543 (594)
Q Consensus 464 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 543 (594)
...+|++..-....+.|+..|.+|+.+.|+ +...+.++|-+....|+.=+|.-.|-|++.
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~--------------------~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPS--------------------NGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------BSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCC--------------------CCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 344555544455567888888888888884 336677777777777777777888888887
Q ss_pred ccCCchHHHHHHHHHHHH
Q 007648 544 LRIATPQIIINYALLLEV 561 (594)
Q Consensus 544 ~~P~~~~~~~~~~~~~~~ 561 (594)
.....|.++.|+..++.+
T Consensus 215 ~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 215 VKFPFPAASTNLQKALSK 232 (497)
T ss_dssp SSBCCHHHHHHHHHHHHH
T ss_pred cCCCChhHHHHHHHHHHH
Confidence 766677777777777654
No 260
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.90 E-value=13 Score=37.77 Aligned_cols=103 Identities=12% Similarity=0.047 Sum_probs=75.1
Q ss_pred HHHHHHHhc--CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh---ccCCChhhHHH
Q 007648 388 WHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQ---VNYKTVDHLAS 462 (594)
Q Consensus 388 ~~~~~~~~~--~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~---~~p~~~~~~~~ 462 (594)
...++.++. |++.+|..++......+-.......-.++++.-.+++...+|+.+|..++.++.. ..+..+.....
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345566653 8999999988886543211100111357888888899999999999999999853 35666666666
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 007648 463 IWCEWAEMELRHKNFKGALELMRRATAE 490 (594)
Q Consensus 463 ~~~~~~~~~~~~~~~~~A~~~~~~al~~ 490 (594)
++...|.+....+++.+|-..|..+...
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 7777888888899999999999988764
No 261
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.91 E-value=13 Score=38.22 Aligned_cols=113 Identities=9% Similarity=0.022 Sum_probs=64.8
Q ss_pred chHHHHHHHHHHHhcCCHHH----------HHHHHHHHHhc--cCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 007648 422 PHTLWVAFAKLYETYKDIAN----------ARVIFDKAVQV--NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATA 489 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~----------A~~~~~kal~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 489 (594)
.+.+|+.++.+++..|+... .|..+-.+++. --.+.+.-..++..+.+.++..+.+++|.++..++.
T Consensus 180 ~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~- 258 (523)
T 4b4t_S 180 NAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE- 258 (523)
T ss_dssp -----------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc-
Confidence 56788988888888776654 46566666552 223334455788888888889999999999999985
Q ss_pred CCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCch
Q 007648 490 EPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP 549 (594)
Q Consensus 490 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~ 549 (594)
.|... ....+ -..+....|.+..-.++|.+|.+.+..|+...|.+.
T Consensus 259 -fP~~~--------~sn~q-----~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 259 -YPHTD--------VSSSL-----EARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp -SCTTT--------SCHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred -CCccc--------CCHHH-----HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 45210 00000 125567778888899999999999999999877553
No 262
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=73.95 E-value=36 Score=28.02 Aligned_cols=81 Identities=12% Similarity=-0.063 Sum_probs=59.7
Q ss_pred CCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCC
Q 007648 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~ 476 (594)
++..+...+|-+.= . +++..-.-......+|..+.--+++...+..+|-+| ++.+.++..+.+.|+
T Consensus 75 ~NlKrVi~C~~~~n----~------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~----~~l~kia~Ay~Klg~ 140 (172)
T 1wy6_A 75 QNLKSVVECGVINN----T------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSA----SILVAIANALRRVGD 140 (172)
T ss_dssp SCTHHHHHHHHHTT----C------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCH----HHHHHHHHHHHHTTC
T ss_pred hcHHHHHHHHHHhc----c------hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCCh----HHHHHHHHHHHHhcc
Confidence 67888888885521 1 222222222344578999999999999888888888 889999999999999
Q ss_pred hHHHHHHHHHHhcCC
Q 007648 477 FKGALELMRRATAEP 491 (594)
Q Consensus 477 ~~~A~~~~~~al~~~ 491 (594)
..+|.+++.+|.+..
T Consensus 141 ~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 141 ERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHhh
Confidence 999999999998764
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=70.25 E-value=20 Score=41.31 Aligned_cols=130 Identities=5% Similarity=-0.201 Sum_probs=85.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCc-hhH-hhhhhccCChh
Q 007648 429 FAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS-VEV-RRRVAADGNEP 506 (594)
Q Consensus 429 ~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~-~~~~~~~~~~~ 506 (594)
+.......+.++-++.. +...|.++ ..-+..|.+++..|++++|...|++|-.-.. ++. ...+. ...
T Consensus 818 l~~~l~~~~~~~~~~~l----~~~~~~~~----~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~---~~~ 886 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQL----IGWLNSDP----IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLR---EFQ 886 (1139)
T ss_dssp HHHHHHHHSCTTHHHHH----HHHSCCCH----HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHH---HHH
T ss_pred HHHHHHHhhhHHHHHHH----hhhccCCc----HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhc---ccc
Confidence 34445567777776653 34567777 4457788889999999999999999864321 100 00000 000
Q ss_pred hhHHhh----ccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccC-Cch----HHHHHHHHHHHHhchhhhhh
Q 007648 507 VQMKLH----KSLRLWTFYVDLEESLGNLESTRAVYERILDLRI-ATP----QIIINYALLLEVWTLLHVFL 569 (594)
Q Consensus 507 ~~~~~~----~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~----~~~~~~~~~~~~~g~~~~a~ 569 (594)
...... --+.++.+-+.+..+.|.++.+.+.-..|++..+ +++ ..|.+........|.|++|-
T Consensus 887 ~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 887 EIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp HHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred cccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 000000 1245678888888899999999999999998553 443 26788888888999999984
No 264
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.28 E-value=17 Score=37.32 Aligned_cols=70 Identities=11% Similarity=0.047 Sum_probs=56.6
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC---hhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCch
Q 007648 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKT---VDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSV 493 (594)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~kal~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 493 (594)
-..++..+...|...+.++.|..+..++. .|.+ ........+.+|.+..-+++|.+|.+.+..|+..+|.
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 46788888889999999999999999996 4433 1233456667788888899999999999999998884
No 265
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=65.33 E-value=1.4e+02 Score=31.46 Aligned_cols=118 Identities=12% Similarity=0.084 Sum_probs=66.6
Q ss_pred cCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHH---hcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHH
Q 007648 396 EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYE---TYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMEL 472 (594)
Q Consensus 396 ~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~ 472 (594)
.++++.|...+.+......-. ....|.....+-. ..+...++...+.++....+++ .+....+...+
T Consensus 227 r~d~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~r~Al 296 (618)
T 1qsa_A 227 RQDAENARLMIPSLAQAQQLN-----EDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST-----SLIERRVRMAL 296 (618)
T ss_dssp HHCHHHHHHHHHHHHHHTTCC-----HHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH-----HHHHHHHHHHH
T ss_pred hcCHHHHHHHHHhhhhccCCC-----HHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCCh-----HHHHHHHHHHH
Confidence 357888888887765421110 1233333333332 2342556777777765433332 22222233345
Q ss_pred hcCChHHHHHHHHHHhcCCchhHhhhhhccCChhhhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHh
Q 007648 473 RHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543 (594)
Q Consensus 473 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 543 (594)
+.|+.+.|...|++.-...+.. .-..+|... .....|+.++|..+|+++.+
T Consensus 297 r~~d~~~a~~~~~~l~~~~~~~------------------~r~~YW~~r--a~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 297 GTGDRRGLNTWLARLPMEAKEK------------------DEWRYWQAD--LLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHTCHHHHHHHHHHSCTTGGGS------------------HHHHHHHHH--HHHHTTCHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHcccccccc------------------HhHHHHHHH--HHHHcCCHHHHHHHHHHHhc
Confidence 7789999988887654432210 012456554 55678999999999999875
No 266
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=59.55 E-value=16 Score=26.36 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHH
Q 007648 252 WTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIF 289 (594)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~ 289 (594)
-+.+|+.+...|+.+.|...|-+|+...|...++..+|
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~ 57 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL 57 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 46778889999999999999999999998877544444
No 267
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=56.16 E-value=96 Score=26.53 Aligned_cols=98 Identities=10% Similarity=0.019 Sum_probs=65.3
Q ss_pred ChHHHHHHHHHhcCCchhHHHHHHHHHhccCCCcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cc--CC----
Q 007648 384 NVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQ--VN--YK---- 455 (594)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~a~~~y~~Ai~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~kal~--~~--p~---- 455 (594)
..+......-.+.|.+.+++-.+-. .+ ....-+.-+.++...+++..|...+++.+. ++ |+
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~----lN-------T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~ 102 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHK----LN-------TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDAR 102 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHT----CC-------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHh----cc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc
Confidence 3444444444556877766554422 11 233444445678889999999999999993 33 11
Q ss_pred ------ChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCc
Q 007648 456 ------TVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS 492 (594)
Q Consensus 456 ------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 492 (594)
++..-.-++..+|.+..+.|+.++|+..|.+.....|
T Consensus 103 ~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~ 145 (242)
T 3kae_A 103 IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSF 145 (242)
T ss_dssp HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence 2222334567778888889999999999999998887
No 268
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=51.32 E-value=1.2e+02 Score=26.03 Aligned_cols=99 Identities=15% Similarity=0.085 Sum_probs=65.4
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhc----CCch-hHhhhhh-ccCChh
Q 007648 433 YETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATA----EPSV-EVRRRVA-ADGNEP 506 (594)
Q Consensus 433 ~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~-~~~~~~~-~~~~~~ 506 (594)
..-.|.+.+|.-++.+. + ... ++++. ..++.+.+++..|...+++.+. .+|+ |+ ++. |.-+..
T Consensus 43 LyyngEY~R~Lf~L~~l---N-T~T----s~YYk-~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~--~~~~ffvd~~ 111 (242)
T 3kae_A 43 LYLNGEYTRALFHLHKL---N-TCT----SKYYE-SLCYKKKKDYKKAIKSLESILEGKVERDPDVDA--RIQEMFVDPG 111 (242)
T ss_dssp HHHTTCHHHHHHHHHTC---C-BHH----HHHHH-HHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCH--HHHTTSCCTT
T ss_pred hhhcchHhHHHHHHHhc---c-hHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHhcccccCccccc--ccceeeeccc
Confidence 33488888887665431 1 122 55554 3466789999999999999993 2342 11 221 111110
Q ss_pred hhHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHhccCCc
Q 007648 507 VQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT 548 (594)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~ 548 (594)
+..-++..++++....|+.++|+..|.+.....|--
T Consensus 112 ------DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf 147 (242)
T 3kae_A 112 ------DEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLF 147 (242)
T ss_dssp ------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred ------hHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcccc
Confidence 123567889999999999999999999999877643
No 269
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=47.67 E-value=27 Score=26.55 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhccccchHHHH
Q 007648 252 WTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIF 289 (594)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l~ 289 (594)
-+.+|+.+...|+++.|...|-+|+...|...++..+|
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~ 60 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL 60 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 46778889999999999999999999998876544444
No 270
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=46.63 E-value=61 Score=29.11 Aligned_cols=53 Identities=9% Similarity=0.103 Sum_probs=38.6
Q ss_pred CCchhHHHHHHHHHhc----cCCCcccCCchHHHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 007648 397 GNPTKQILTYTEAVRT----VDPMKAVGKPHTLWVAFAKLYE-TYKDIANARVIFDKAVQ 451 (594)
Q Consensus 397 ~~~~~a~~~y~~Ai~~----~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~kal~ 451 (594)
|+.+.|...|+.|... ++|.++. ...+-++++.|+. -.++.++|..+-++|+.
T Consensus 139 g~~e~a~~aY~~A~~iA~~~L~pthPi--rLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 139 CSLEDSKKIHQDAFTLLCEHPDKIEQL--PLGFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGGGGS--CHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhCCCCChH--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5677888899988853 4554332 3456777777766 58889999999888875
No 271
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=44.85 E-value=55 Score=26.96 Aligned_cols=56 Identities=16% Similarity=0.017 Sum_probs=28.8
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHh
Q 007648 109 LETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLK 167 (594)
Q Consensus 109 ~~~~~~~~~~~~A~~~~~ral~~~p~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~l~ 167 (594)
......+|+-++.-+++...+.-.|-+ +.+...++..+...|+. .++.++..++.+
T Consensus 98 Ld~lv~~~KkDqLdki~~~~l~n~~~~--~~~l~kia~Ay~Klg~~-r~a~eLl~~AC~ 153 (172)
T 1wy6_A 98 LDILVIQGKRDKLEEIGREILKNNEVS--ASILVAIANALRRVGDE-RDATTLLIEACK 153 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC--CCSC--HHHHHHHHHHHHHTTCH-HHHHHHHHHHHH
T ss_pred HHHHHHhccHhHHHHHHHHHhccCCCC--hHHHHHHHHHHHHhcch-hhHHHHHHHHHH
Confidence 344455555555555555543333322 45555555555566665 666666666554
No 272
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=42.66 E-value=83 Score=36.14 Aligned_cols=107 Identities=9% Similarity=-0.050 Sum_probs=74.2
Q ss_pred cCCCChHHHHHHHHHh--cCCchhHHHHHHHHHhccCCCcc-----------------cCCchHHHHHHHHHHHhcCCHH
Q 007648 380 QNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKA-----------------VGKPHTLWVAFAKLYETYKDIA 440 (594)
Q Consensus 380 ~~p~~~~~~~~~~~~~--~~~~~~a~~~y~~Ai~~~~~~~~-----------------~~~~~~~~~~~a~~~~~~~~~~ 440 (594)
--|.++-.-+.+|+.+ .|++++|..+|++|-..+..... ....+..|.+...+.++.|.++
T Consensus 837 ~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~ 916 (1139)
T 4fhn_B 837 WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYI 916 (1139)
T ss_dssp HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCH
T ss_pred hccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHH
Confidence 3456655555566655 48999999999998643322110 1123456778888888999999
Q ss_pred HHHHHHHHHHhcc-CCChhhHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007648 441 NARVIFDKAVQVN-YKTVDHLASIWCEWAEMELRHKNFKGALELMRR 486 (594)
Q Consensus 441 ~A~~~~~kal~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 486 (594)
.+.+.-+.|++.. ++++..-..+|...-...+..|++++|-..+..
T Consensus 917 ~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 917 DALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 9999999999964 444433334777776777889999998777654
No 273
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=41.77 E-value=62 Score=23.19 Aligned_cols=30 Identities=20% Similarity=0.079 Sum_probs=25.5
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 007648 106 IMYLETLTSQKFITKARRTFDRALCALPVT 135 (594)
Q Consensus 106 ~~y~~~~~~~~~~~~A~~~~~ral~~~p~~ 135 (594)
+..|+.+..+|+++.+..-|-+|+..+|..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 457788888899999999899999999976
No 274
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=40.86 E-value=3.8e+02 Score=29.92 Aligned_cols=123 Identities=7% Similarity=-0.155 Sum_probs=78.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCC-chh----HhhhhhccC
Q 007648 429 FAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEP-SVE----VRRRVAADG 503 (594)
Q Consensus 429 ~a~~~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~----~~~~~~~~~ 503 (594)
+.......|.++-|+. .+...|.++ -.-+.+|..++..|++++|...|++|-.-. +++ ...... +
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~----~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~--~ 885 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDP----IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQ--E 885 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSH----HHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHH--H
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhh--h
Confidence 3344456777776554 456678887 445778999999999999999999987432 110 000000 0
Q ss_pred Chhh-hHHhhccHhhHHHHHHHHHHhCChHHHHHHHHHHHh-ccCCchH----HHHHHHHHHHHh
Q 007648 504 NEPV-QMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD-LRIATPQ----IIINYALLLEVW 562 (594)
Q Consensus 504 ~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~P~~~~----~~~~~~~~~~~~ 562 (594)
-.+. ..+. ....+|.+-+.+..+.|-++.+...-+.||+ ..++++. +|.++.......
T Consensus 886 ll~~~e~~~-~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 886 IAEKYHHQN-LLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHHTTTCS-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCcccccc-hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 0000 0000 0234889999999999999999999999998 4566665 555555544433
No 275
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=40.01 E-value=1.2e+02 Score=25.47 Aligned_cols=56 Identities=7% Similarity=0.051 Sum_probs=41.8
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCChhhHHHHHHHHHH------HHHhcCChHHHHHHHHHHhc
Q 007648 433 YETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAE------MELRHKNFKGALELMRRATA 489 (594)
Q Consensus 433 ~~~~~~~~~A~~~~~kal~~~p~~~~~~~~~~~~~~~------~~~~~~~~~~A~~~~~~al~ 489 (594)
+...|++=+|=+++|.+.+..+...+. ..+|..+++ ...+.||...|+.++.+|+.
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~e-r~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTE-SKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHH-HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchH-HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345699999999999999876544111 256666665 23668999999999999976
No 276
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=39.28 E-value=18 Score=26.80 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=11.5
Q ss_pred HhCChHHHHHHHHHHHh
Q 007648 527 SLGNLESTRAVYERILD 543 (594)
Q Consensus 527 ~~g~~~~A~~~~~~al~ 543 (594)
+.|++++|..+|..+++
T Consensus 31 ~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 55777777777766666
No 277
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=37.13 E-value=20 Score=26.50 Aligned_cols=17 Identities=18% Similarity=0.485 Sum_probs=10.5
Q ss_pred HhCChHHHHHHHHHHHh
Q 007648 527 SLGNLESTRAVYERILD 543 (594)
Q Consensus 527 ~~g~~~~A~~~~~~al~ 543 (594)
+.|++++|..+|..+++
T Consensus 23 ~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 44666666666666655
No 278
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.37 E-value=99 Score=26.10 Aligned_cols=41 Identities=10% Similarity=0.054 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhCCCC---hHHHHHHHH
Q 007648 28 KLWWRYLVAKREAPFKKRFVIYERALKALPGS---YKLWHAYLI 68 (594)
Q Consensus 28 ~~w~~~~~~~~~~~~~~a~~~~e~al~~~P~s---~~lW~~~~~ 68 (594)
..|..++.....|++-.|-+++|.+-+..|.. -.+|+.+|.
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ 77 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQ 77 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 46888888888899999999999998877543 456666655
No 279
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=34.58 E-value=1.2e+02 Score=27.34 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=30.2
Q ss_pred chhHHHHHHHHHh----ccCCCcccCCchHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 007648 399 PTKQILTYTEAVR----TVDPMKAVGKPHTLWVAFAKLYE-TYKDIANARVIFDKAV 450 (594)
Q Consensus 399 ~~~a~~~y~~Ai~----~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~kal 450 (594)
.+.+...|+.|.. .+||.++. ...+-++++.|+. -.++.++|..+-++|+
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPi--rLGLaLNfSVFyyEiln~~~~Ac~lAk~Af 203 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPI--RLGLALNFSVFHYEIANSPEEAISLAKTTF 203 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHH--HHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567778887764 35664322 2344556666655 4677777776655554
No 280
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=30.13 E-value=1.2e+02 Score=27.80 Aligned_cols=50 Identities=16% Similarity=0.241 Sum_probs=32.9
Q ss_pred chhHHHHHHHHHh----ccCCCcccCCchHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 007648 399 PTKQILTYTEAVR----TVDPMKAVGKPHTLWVAFAKLYE-TYKDIANARVIFDKAV 450 (594)
Q Consensus 399 ~~~a~~~y~~Ai~----~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~kal 450 (594)
.+.+...|+.|.. .++|.++. ...+-++++.|+. -.++.++|..+-++|+
T Consensus 151 ~e~a~~aY~~A~~iA~~~L~pthPi--rLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 205 (260)
T 1o9d_A 151 AESTLTAYKAAQDIATTELAPTHPI--RLGLALNFSVFYYEILNSPDRACNLAKQAF 205 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHH--HHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcH--HHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4567788888875 25664322 2345567777766 4788888887777766
No 281
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=29.92 E-value=83 Score=18.40 Aligned_cols=26 Identities=15% Similarity=0.317 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHhCChHHHHHHHHHH
Q 007648 516 RLWTFYVDLEESLGNLESTRAVYERI 541 (594)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (594)
+.-..|++.+.+.|..++|-.+-.++
T Consensus 3 DYSaQW~eYYrsiG~~~eAeaIe~q~ 28 (33)
T 2bn5_A 3 DYSAQWAEYYRSVGKIEEAEAIEKTL 28 (33)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHcccHHHHHHHHHHH
Confidence 34466788899999999998885543
No 282
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=27.91 E-value=52 Score=29.14 Aligned_cols=20 Identities=5% Similarity=-0.001 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHhCCCChH
Q 007648 42 FKKRFVIYERALKALPGSYK 61 (594)
Q Consensus 42 ~~~a~~~~e~al~~~P~s~~ 61 (594)
.++|..+++..-...|....
T Consensus 88 LESAl~v~~~I~~e~~l~~~ 107 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEA 107 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHhhcCcHH
Confidence 35666666666666654433
No 283
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=26.81 E-value=1.1e+02 Score=27.61 Aligned_cols=51 Identities=16% Similarity=0.258 Sum_probs=32.5
Q ss_pred chhHHHHHHHHHh----ccCCCcccCCchHHHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 007648 399 PTKQILTYTEAVR----TVDPMKAVGKPHTLWVAFAKLYE-TYKDIANARVIFDKAVQ 451 (594)
Q Consensus 399 ~~~a~~~y~~Ai~----~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~kal~ 451 (594)
.++|...|+.|.. .++|.++. ...+-++++.|+. -.++.++|..+-++|+.
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPi--rLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPI--RLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHH--HHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567788888875 25664322 2345566777766 47888888777666653
No 284
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=25.27 E-value=1.4e+02 Score=21.23 Aligned_cols=42 Identities=10% Similarity=0.058 Sum_probs=29.8
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 007648 234 DAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMM 277 (594)
Q Consensus 234 ~~~~~~~~~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (594)
++++.+++..||...++-|...|.+. .+-..+++..|+....
T Consensus 16 ~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 16 LSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp HHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 46788899999865567899999885 3455566666666543
No 285
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=24.70 E-value=1.3e+02 Score=27.66 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=32.9
Q ss_pred chhHHHHHHHHHhc---cCCCcccCCchHHHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 007648 399 PTKQILTYTEAVRT---VDPMKAVGKPHTLWVAFAKLYE-TYKDIANARVIFDKAVQ 451 (594)
Q Consensus 399 ~~~a~~~y~~Ai~~---~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~kal~ 451 (594)
.+++...|+.|... ++|.++. ...+-++++.|+. -.++.++|..+-++|+.
T Consensus 172 ~e~a~~aY~~A~~iA~~L~pthPi--rLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 172 AEDALKAYKDATVVAKDLEPTHPI--RLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTCHH--HHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35677888888763 4554321 2345667777766 47888888877666664
No 286
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=24.64 E-value=1.3e+02 Score=27.46 Aligned_cols=50 Identities=16% Similarity=0.194 Sum_probs=32.1
Q ss_pred chhHHHHHHHHHh----ccCCCcccCCchHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 007648 399 PTKQILTYTEAVR----TVDPMKAVGKPHTLWVAFAKLYE-TYKDIANARVIFDKAV 450 (594)
Q Consensus 399 ~~~a~~~y~~Ai~----~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~kal 450 (594)
.+.+...|+.|.. .+||.++. ...+-++++.|+. -.++.++|..+-++|+
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPi--rLGLaLNfSVFyYEIln~~~~Ac~lAk~Af 201 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPI--RLGLALNYSVFYYEIQNAPEQACHLAKTAF 201 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHH--HHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3567788888764 35664432 2345566777766 4788888877766665
No 287
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=23.76 E-value=46 Score=25.14 Aligned_cols=17 Identities=12% Similarity=0.243 Sum_probs=9.5
Q ss_pred HhCChHHHHHHHHHHHh
Q 007648 527 SLGNLESTRAVYERILD 543 (594)
Q Consensus 527 ~~g~~~~A~~~~~~al~ 543 (594)
..|++++|..+|..|++
T Consensus 27 ~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 27 AESRYQQALVCYQEGID 43 (93)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 34566665555555555
No 288
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=22.95 E-value=1.4e+02 Score=27.32 Aligned_cols=50 Identities=16% Similarity=0.257 Sum_probs=31.5
Q ss_pred chhHHHHHHHHHh----ccCCCcccCCchHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 007648 399 PTKQILTYTEAVR----TVDPMKAVGKPHTLWVAFAKLYE-TYKDIANARVIFDKAV 450 (594)
Q Consensus 399 ~~~a~~~y~~Ai~----~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~kal 450 (594)
.+.+...|+.|.. .+||.++. ...+-++++.|+. -.++.++|..+-++|+
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPi--rLGLaLNfSVFyYEIln~p~~Ac~LAk~AF 226 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPI--RLGLALNFSVFYYEILNSPDRACRLAKAAF 226 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHH--HHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3567788888764 35664322 2345566677766 4788888777666655
No 289
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=21.80 E-value=1.3e+02 Score=22.63 Aligned_cols=29 Identities=10% Similarity=-0.023 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHhCChHHHHHHHHHHHh
Q 007648 515 LRLWTFYVDLEESLGNLESTRAVYERILD 543 (594)
Q Consensus 515 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 543 (594)
+......++-..+.|+||+|+++.++|..
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
No 290
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=20.72 E-value=2.4e+02 Score=25.26 Aligned_cols=54 Identities=9% Similarity=0.033 Sum_probs=40.7
Q ss_pred hcCCHHHHHHHHHHHHh-----ccCCChhhHHHHHHHHHHHHH-hcCChHHHHHHHHHHhc
Q 007648 435 TYKDIANARVIFDKAVQ-----VNYKTVDHLASIWCEWAEMEL-RHKNFKGALELMRRATA 489 (594)
Q Consensus 435 ~~~~~~~A~~~~~kal~-----~~p~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~ 489 (594)
..|+.+.|...|+.|.. ..|.+|--+ .+.+.++.|+. -.++.++|..+.++|+.
T Consensus 137 ~~g~~e~a~~aY~~A~~iA~~~L~pthPirL-GLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 137 GLCSLEDSKKIHQDAFTLLCEHPDKIEQLPL-GFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHCGGGGGGSCH-HHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhhCCCCChHHH-HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 46678899999999876 356666333 56777777764 47889999999999966
No 291
>1f3k_A Omega-conotoxin txvii; cystine knot motif, triple-stranded antiparallel beta-sheet, L-type calcium channel blocker; NMR {Synthetic} SCOP: g.3.6.1
Probab=20.14 E-value=26 Score=18.86 Aligned_cols=8 Identities=63% Similarity=1.784 Sum_probs=5.9
Q ss_pred heeecccC
Q 007648 586 FTVSCCTG 593 (594)
Q Consensus 586 ~~~~~~~~ 593 (594)
|...||+|
T Consensus 11 fsqnCC~G 18 (26)
T 1f3k_A 11 FSLDCCTG 18 (26)
T ss_dssp SSCCSTTS
T ss_pred cccccccc
Confidence 56778887
Done!