Query 007651
Match_columns 594
No_of_seqs 248 out of 1350
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 13:30:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007651.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007651hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05505 Bromo_WSTF_like Bromod 99.9 2E-25 4.3E-30 196.2 9.6 95 25-119 2-96 (97)
2 cd05497 Bromo_Brdt_I_like Brom 99.9 2.8E-25 6E-30 198.3 10.2 98 26-123 7-107 (107)
3 cd05503 Bromo_BAZ2A_B_like Bro 99.9 7.4E-25 1.6E-29 191.8 9.6 96 25-120 2-97 (97)
4 cd05496 Bromo_WDR9_II Bromodom 99.9 1.3E-24 2.9E-29 197.6 11.1 100 26-125 8-108 (119)
5 cd05504 Bromo_Acf1_like Bromod 99.9 8.9E-25 1.9E-29 197.3 9.5 103 22-124 11-113 (115)
6 cd05495 Bromo_cbp_like Bromodo 99.9 2E-24 4.3E-29 192.9 11.7 98 27-124 7-107 (108)
7 cd05507 Bromo_brd8_like Bromod 99.9 1.7E-24 3.6E-29 192.0 10.9 96 28-123 8-103 (104)
8 cd05510 Bromo_SPT7_like Bromod 99.9 3.8E-24 8.3E-29 192.7 10.8 101 25-125 9-111 (112)
9 cd05509 Bromo_gcn5_like Bromod 99.9 4.6E-24 9.9E-29 187.1 10.5 98 26-123 4-101 (101)
10 cd05508 Bromo_RACK7 Bromodomai 99.9 5.9E-24 1.3E-28 187.7 10.2 89 30-119 10-98 (99)
11 cd05513 Bromo_brd7_like Bromod 99.9 5.5E-24 1.2E-28 187.6 9.9 93 27-119 5-97 (98)
12 cd05499 Bromo_BDF1_2_II Bromod 99.9 5.6E-24 1.2E-28 187.2 9.9 96 25-120 2-102 (102)
13 cd05502 Bromo_tif1_like Bromod 99.9 1.4E-23 3E-28 187.1 11.4 99 25-124 6-107 (109)
14 KOG1474 Transcription initiati 99.9 5.1E-24 1.1E-28 239.2 10.6 108 23-130 222-331 (640)
15 cd05506 Bromo_plant1 Bromodoma 99.9 1.4E-23 3E-28 183.3 10.1 95 26-120 3-99 (99)
16 cd05512 Bromo_brd1_like Bromod 99.9 1.1E-23 2.4E-28 185.3 9.1 90 28-117 6-95 (98)
17 cd05498 Bromo_Brdt_II_like Bro 99.9 1.9E-23 4.1E-28 183.5 10.3 95 26-120 3-102 (102)
18 cd05500 Bromo_BDF1_2_I Bromodo 99.9 1.8E-23 3.9E-28 184.7 9.9 95 25-119 6-102 (103)
19 cd05528 Bromo_AAA Bromodomain; 99.9 3.2E-23 7E-28 186.6 11.6 97 28-124 8-108 (112)
20 cd05511 Bromo_TFIID Bromodomai 99.9 4.6E-23 1E-27 185.3 10.9 99 28-126 5-103 (112)
21 cd05501 Bromo_SP100C_like Brom 99.9 7.9E-23 1.7E-27 181.8 10.9 95 26-123 5-99 (102)
22 cd05516 Bromo_SNF2L2 Bromodoma 99.9 1.1E-22 2.4E-27 181.3 10.4 96 28-123 6-107 (107)
23 cd05524 Bromo_polybromo_I Brom 99.9 2.4E-22 5.2E-27 181.0 9.9 101 26-126 5-111 (113)
24 cd05519 Bromo_SNF2 Bromodomain 99.9 5.2E-22 1.1E-26 175.4 9.9 93 28-120 5-103 (103)
25 cd05529 Bromo_WDR9_I_like Brom 99.9 9.5E-22 2.1E-26 180.7 11.3 96 27-122 28-127 (128)
26 cd05515 Bromo_polybromo_V Brom 99.9 1.1E-21 2.3E-26 174.4 10.1 94 28-121 5-104 (105)
27 smart00297 BROMO bromo domain. 99.9 1.8E-21 4E-26 169.8 10.7 96 27-122 11-106 (107)
28 cd05520 Bromo_polybromo_III Br 99.9 1.3E-21 2.8E-26 173.6 9.7 81 39-119 22-102 (103)
29 cd05517 Bromo_polybromo_II Bro 99.9 2E-21 4.3E-26 172.5 9.7 92 27-118 4-101 (103)
30 cd05525 Bromo_ASH1 Bromodomain 99.8 5.7E-21 1.2E-25 170.6 10.5 91 29-119 8-104 (106)
31 cd05518 Bromo_polybromo_IV Bro 99.8 4.4E-21 9.5E-26 170.4 9.6 82 37-118 20-101 (103)
32 PF00439 Bromodomain: Bromodom 99.8 5E-21 1.1E-25 160.2 9.1 84 28-111 1-84 (84)
33 KOG0955 PHD finger protein BR1 99.8 3.4E-21 7.4E-26 223.1 9.1 283 30-327 572-868 (1051)
34 cd04369 Bromodomain Bromodomai 99.8 1E-20 2.2E-25 159.2 9.1 94 26-119 3-98 (99)
35 cd05522 Bromo_Rsc1_2_II Bromod 99.8 4.4E-20 9.4E-25 164.0 9.8 82 38-119 22-103 (104)
36 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 1.2E-19 2.5E-24 162.2 10.1 92 28-121 6-103 (106)
37 cd05492 Bromo_ZMYND11 Bromodom 99.8 3E-19 6.6E-24 160.6 11.1 95 30-124 7-107 (109)
38 cd05526 Bromo_polybromo_VI Bro 99.7 3.8E-16 8.2E-21 140.9 9.8 93 30-124 10-108 (110)
39 COG5076 Transcription factor i 99.6 1.9E-16 4.2E-21 167.6 8.2 90 38-127 163-252 (371)
40 KOG1245 Chromatin remodeling c 99.6 4.8E-16 1E-20 186.2 7.8 95 28-123 1306-1400(1404)
41 KOG1472 Histone acetyltransfer 99.4 1.9E-13 4.1E-18 154.2 5.3 97 28-124 611-707 (720)
42 cd05494 Bromodomain_1 Bromodom 99.2 6E-12 1.3E-16 114.1 2.2 77 25-101 5-90 (114)
43 cd05491 Bromo_TBP7_like Bromod 98.9 1E-09 2.2E-14 100.5 5.8 42 62-103 63-104 (119)
44 KOG0008 Transcription initiati 98.9 1.4E-09 3E-14 128.0 5.7 93 30-122 1389-1481(1563)
45 KOG0386 Chromatin remodeling c 98.7 1.2E-08 2.5E-13 118.2 6.7 98 28-125 1029-1132(1157)
46 KOG1827 Chromatin remodeling c 98.7 3.4E-08 7.4E-13 110.9 8.2 81 41-121 76-156 (629)
47 KOG1828 IRF-2-binding protein 98.6 4.2E-09 9.1E-14 111.8 -1.3 97 25-121 21-117 (418)
48 KOG0008 Transcription initiati 98.5 1.1E-07 2.3E-12 112.6 6.9 87 30-116 1268-1354(1563)
49 KOG1472 Histone acetyltransfer 98.5 1.1E-07 2.5E-12 108.2 4.6 72 37-108 300-371 (720)
50 PF12024 DUF3512: Domain of un 98.3 1.9E-07 4.1E-12 94.8 2.1 125 182-310 44-184 (245)
51 KOG1828 IRF-2-binding protein 98.3 4.2E-07 9.1E-12 96.9 3.0 82 32-114 217-298 (418)
52 KOG1474 Transcription initiati 98.2 5E-07 1.1E-11 102.9 1.0 95 36-130 5-101 (640)
53 COG5076 Transcription factor i 96.9 0.00028 6.1E-09 75.5 0.2 91 34-124 274-364 (371)
54 cd05493 Bromo_ALL-1 Bromodomai 95.9 0.014 3E-07 55.0 5.3 64 62-125 58-121 (131)
55 KOG0644 Uncharacterized conser 90.1 0.25 5.3E-06 58.3 3.5 64 56-119 1046-1109(1113)
56 KOG0732 AAA+-type ATPase conta 85.9 0.58 1.3E-05 56.9 3.2 63 40-102 532-601 (1080)
57 KOG0644 Uncharacterized conser 71.2 1.1 2.3E-05 53.3 -0.7 72 43-115 85-186 (1113)
58 KOG1827 Chromatin remodeling c 62.9 1.2 2.7E-05 51.4 -2.3 75 41-115 213-287 (629)
59 PF14372 DUF4413: Domain of un 38.8 1E+02 0.0022 27.5 6.3 48 76-123 4-51 (101)
60 TIGR02606 antidote_CC2985 puta 33.0 70 0.0015 26.9 4.1 27 67-93 12-38 (69)
61 PRK10991 fucI L-fucose isomera 25.7 1.8E+02 0.004 34.1 7.1 67 30-97 165-238 (588)
62 PF03693 RHH_2: Uncharacterise 20.4 1.3E+02 0.0027 26.2 3.5 27 67-93 15-41 (80)
No 1
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2e-25 Score=196.17 Aligned_cols=95 Identities=25% Similarity=0.349 Sum_probs=91.7
Q ss_pred ccchHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCH
Q 007651 25 WNWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI 104 (594)
Q Consensus 25 ~~wc~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~ 104 (594)
+.+|.+||.+|++++.+++|.+|||+..+|||+++|++||||+||++||+++.|.++++|.+||+|||.||+.||++++.
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~ 81 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGSY 81 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 007651 105 YFRQARSIHELAKKN 119 (594)
Q Consensus 105 i~k~Ak~Le~lfek~ 119 (594)
++++|.+|++.|...
T Consensus 82 i~~~a~~le~~f~~~ 96 (97)
T cd05505 82 VLSCMRKTEQCCVNL 96 (97)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999765
No 2
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.8e-25 Score=198.27 Aligned_cols=98 Identities=22% Similarity=0.368 Sum_probs=92.7
Q ss_pred cch-HHHHHHHHhCCCCCCCcCCCCCC--CCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCC
Q 007651 26 NWD-PQRLYQIKSYCCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 102 (594)
Q Consensus 26 ~wc-~qIL~kLk~~~~A~~F~ePVD~~--e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pd 102 (594)
+|+ ..||.+|.+++.+++|.+|||+. .+||||+||++||||+||++||+++.|.++++|.+||+|||.||+.||+++
T Consensus 7 ~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 86 (107)
T cd05497 7 QYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNKPG 86 (107)
T ss_pred HHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 445 37899999999999999999987 699999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhh
Q 007651 103 TIYFRQARSIHELAKKNFENL 123 (594)
Q Consensus 103 S~i~k~Ak~Le~lfek~~~~L 123 (594)
+.++++|..|++.|++.++++
T Consensus 87 s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 87 DDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999998764
No 3
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=7.4e-25 Score=191.75 Aligned_cols=96 Identities=27% Similarity=0.435 Sum_probs=92.7
Q ss_pred ccchHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCH
Q 007651 25 WNWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI 104 (594)
Q Consensus 25 ~~wc~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~ 104 (594)
+.+|..||.+|.+++.+.+|.+||++..+|+|+++|++||||+||++||+++.|+++++|..||+|||.||+.||++++.
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~ 81 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDSE 81 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 007651 105 YFRQARSIHELAKKNF 120 (594)
Q Consensus 105 i~k~Ak~Le~lfek~~ 120 (594)
++++|..|++.|++.|
T Consensus 82 i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 82 VGRAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999998864
No 4
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.3e-24 Score=197.64 Aligned_cols=100 Identities=25% Similarity=0.381 Sum_probs=95.5
Q ss_pred cchHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCC-CCH
Q 007651 26 NWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP-DTI 104 (594)
Q Consensus 26 ~wc~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~p-dS~ 104 (594)
+.|.+||..|++++.+++|.+|||+..+|||++||++||||+||++||+++.|.++++|..||+|||.||+.||++ ++.
T Consensus 8 ~~c~~il~~l~~~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~~~~s~ 87 (119)
T cd05496 8 KQCKELVNLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYTPNKRSR 87 (119)
T ss_pred HHHHHHHHHHHhCCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCH
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999999985 899
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 007651 105 YFRQARSIHELAKKNFENLRQ 125 (594)
Q Consensus 105 i~k~Ak~Le~lfek~~~~L~~ 125 (594)
+|.+|..|+..|++.+.++..
T Consensus 88 i~~~a~~L~~~F~~~~~~l~~ 108 (119)
T cd05496 88 IYSMTLRLSALFEEHIKKIIS 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988754
No 5
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=8.9e-25 Score=197.29 Aligned_cols=103 Identities=29% Similarity=0.418 Sum_probs=98.8
Q ss_pred CCcccchHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCC
Q 007651 22 GLSWNWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 101 (594)
Q Consensus 22 gLs~~wc~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~p 101 (594)
...+.+|.+||.+|++++.+++|.+|||...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++
T Consensus 11 ~~~~~~c~~il~~l~~~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN~~ 90 (115)
T cd05504 11 PLNLSALEQLLVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNPE 90 (115)
T ss_pred HHHHHHHHHHHHHHHhCCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhh
Q 007651 102 DTIYFRQARSIHELAKKNFENLR 124 (594)
Q Consensus 102 dS~i~k~Ak~Le~lfek~~~~L~ 124 (594)
++.++++|..|+..|++.++++.
T Consensus 91 ~s~i~~~A~~l~~~f~~~~~~~~ 113 (115)
T cd05504 91 HTSVYKAGTRLQRFFIKRCRKLG 113 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999998874
No 6
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2e-24 Score=192.94 Aligned_cols=98 Identities=26% Similarity=0.443 Sum_probs=93.0
Q ss_pred chHHHHHHHHhC-CCCCCCcCCCCCC--CCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCC
Q 007651 27 WDPQRLYQIKSY-CCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 103 (594)
Q Consensus 27 wc~qIL~kLk~~-~~A~~F~ePVD~~--e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS 103 (594)
.|..||++|+++ +.+++|.+|||++ ++||||++|++||||+||++||+++.|.++.+|.+||+|||.||+.||++++
T Consensus 7 ~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s 86 (108)
T cd05495 7 ALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLYNRKTS 86 (108)
T ss_pred HHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 356889999999 9999999999998 6999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 007651 104 IYFRQARSIHELAKKNFENLR 124 (594)
Q Consensus 104 ~i~k~Ak~Le~lfek~~~~L~ 124 (594)
.++++|.+|++.|++.++.+.
T Consensus 87 ~i~~~a~~l~~~F~~~~~~~~ 107 (108)
T cd05495 87 RVYKYCTKLAEVFEQEIDPVM 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988653
No 7
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.7e-24 Score=191.99 Aligned_cols=96 Identities=23% Similarity=0.362 Sum_probs=92.2
Q ss_pred hHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHHH
Q 007651 28 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 107 (594)
Q Consensus 28 c~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~k 107 (594)
|..||.+|++++.+++|.+|||.+.+|+|+++|++||||+||++||+++.|.++++|.+||+|||.||++||++++.++.
T Consensus 8 ~~~il~~l~~~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~v~~ 87 (104)
T cd05507 8 ILLVYRTLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSSDHDVYL 87 (104)
T ss_pred HHHHHHHHHcCCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 007651 108 QARSIHELAKKNFENL 123 (594)
Q Consensus 108 ~Ak~Le~lfek~~~~L 123 (594)
+|+.|++.+.+.++.+
T Consensus 88 ~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 88 MAVEMQREVMSQIQQL 103 (104)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999998887653
No 8
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=3.8e-24 Score=192.68 Aligned_cols=101 Identities=29% Similarity=0.439 Sum_probs=95.2
Q ss_pred ccchHHHHHHHHhC-CCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCC
Q 007651 25 WNWDPQRLYQIKSY-CCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 103 (594)
Q Consensus 25 ~~wc~qIL~kLk~~-~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS 103 (594)
...|.+||.+|+++ +.+++|.+||+++++|||+++|++||||+||++||+++.|+++++|.+||+|||.||+.||++++
T Consensus 9 ~~~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~yN~~~s 88 (112)
T cd05510 9 YESLDKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLYNSDPS 88 (112)
T ss_pred HHHHHHHHHHHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 35688999999999 89999999999999999999999999999999999999999999999999999999999999765
Q ss_pred -HHHHHHHHHHHHHHHHHHhhhc
Q 007651 104 -IYFRQARSIHELAKKNFENLRQ 125 (594)
Q Consensus 104 -~i~k~Ak~Le~lfek~~~~L~~ 125 (594)
.++++|..|++.|++.+..+++
T Consensus 89 ~~~~~~A~~l~~~~~~~~~~~~~ 111 (112)
T cd05510 89 HPLRRHANFMKKKAEHLLKLIPD 111 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC
Confidence 7889999999999999998853
No 9
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=4.6e-24 Score=187.12 Aligned_cols=98 Identities=37% Similarity=0.541 Sum_probs=94.5
Q ss_pred cchHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHH
Q 007651 26 NWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIY 105 (594)
Q Consensus 26 ~wc~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i 105 (594)
..|..||..|++++.+++|.+||++..+|+|+++|++||||+||++||+++.|.++++|..||+|||+||+.||++++.+
T Consensus 4 ~~~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~ 83 (101)
T cd05509 4 TQLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPDTEY 83 (101)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 35779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 007651 106 FRQARSIHELAKKNFENL 123 (594)
Q Consensus 106 ~k~Ak~Le~lfek~~~~L 123 (594)
+++|..|++.|++.++++
T Consensus 84 ~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 84 YKCANKLEKFFWKKLKEL 101 (101)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 999999999999998864
No 10
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=5.9e-24 Score=187.66 Aligned_cols=89 Identities=26% Similarity=0.402 Sum_probs=85.1
Q ss_pred HHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHHHHH
Q 007651 30 QRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQA 109 (594)
Q Consensus 30 qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~k~A 109 (594)
.++.+++ ++.+++|.+||+++.+|||+++|++||||+||++||+++.|+++++|.+||+|||.||+.||++++.++.+|
T Consensus 10 ~~~~~~~-~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~s~i~~~A 88 (99)
T cd05508 10 FALERMK-QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGDHKLTQAA 88 (99)
T ss_pred HHHHHHh-CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 5578888 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 007651 110 RSIHELAKKN 119 (594)
Q Consensus 110 k~Le~lfek~ 119 (594)
+.|.+.|++.
T Consensus 89 ~~l~~~~~~e 98 (99)
T cd05508 89 KAIVKICEQE 98 (99)
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 11
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=5.5e-24 Score=187.57 Aligned_cols=93 Identities=34% Similarity=0.601 Sum_probs=88.4
Q ss_pred chHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHH
Q 007651 27 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF 106 (594)
Q Consensus 27 wc~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~ 106 (594)
.|.+||.+|++++.+++|..||+..++|||+++|++||||+||++||+++.|.++++|++||+|||.||+.||++++.+|
T Consensus 5 ~l~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~ 84 (98)
T cd05513 5 ALEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPDTIYY 84 (98)
T ss_pred HHHHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 007651 107 RQARSIHELAKKN 119 (594)
Q Consensus 107 k~Ak~Le~lfek~ 119 (594)
++|.+|.+...++
T Consensus 85 ~~A~~L~~~~~~~ 97 (98)
T cd05513 85 KAAKKLLHSGMKI 97 (98)
T ss_pred HHHHHHHHhhhhh
Confidence 9999998876554
No 12
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=5.6e-24 Score=187.22 Aligned_cols=96 Identities=27% Similarity=0.502 Sum_probs=91.2
Q ss_pred ccchHHHHHHHHhC---CCCCCCcCCCCCC--CCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhc
Q 007651 25 WNWDPQRLYQIKSY---CCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYN 99 (594)
Q Consensus 25 ~~wc~qIL~kLk~~---~~A~~F~ePVD~~--e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN 99 (594)
+++|.+||.+|.+. +.+++|++|||+. .+|||+++|++||||++|++||+++.|+++++|..||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 46899999999884 5799999999998 999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 007651 100 APDTIYFRQARSIHELAKKNF 120 (594)
Q Consensus 100 ~pdS~i~k~Ak~Le~lfek~~ 120 (594)
++++.++++|..|++.|++.|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999998864
No 13
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.4e-23 Score=187.11 Aligned_cols=99 Identities=21% Similarity=0.375 Sum_probs=94.7
Q ss_pred ccchHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhC---CCCCCHHHHHHHHHHHHHHhhhhcCC
Q 007651 25 WNWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLAN---GAYATLEQFEKDVFLICSNAMQYNAP 101 (594)
Q Consensus 25 ~~wc~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~---g~Y~SieEF~~DVrLIf~NA~~YN~p 101 (594)
..+|.+||.+|.+++.+++|.+||++ .+|+|+++|++||||+||++||++ +.|.++++|.+||+|||+||+.||++
T Consensus 6 ~~~c~~il~~l~~~~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 84 (109)
T cd05502 6 QRKCERLLLELYCHELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKFNEE 84 (109)
T ss_pred HHHHHHHHHHHHhCCCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 35688999999999999999999999 899999999999999999999998 59999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhh
Q 007651 102 DTIYFRQARSIHELAKKNFENLR 124 (594)
Q Consensus 102 dS~i~k~Ak~Le~lfek~~~~L~ 124 (594)
++.++++|..|++.|++.+.++-
T Consensus 85 ~s~i~~~a~~l~~~f~~~~~~~~ 107 (109)
T cd05502 85 DSEVAQAGKELELFFEEQLKEIL 107 (109)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999998763
No 14
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.90 E-value=5.1e-24 Score=239.20 Aligned_cols=108 Identities=26% Similarity=0.450 Sum_probs=101.6
Q ss_pred CcccchHHHHHHHHhCCCCCCCcCCCCCC--CCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcC
Q 007651 23 LSWNWDPQRLYQIKSYCCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNA 100 (594)
Q Consensus 23 Ls~~wc~qIL~kLk~~~~A~~F~ePVD~~--e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~ 100 (594)
-.++.|..||.+|+.|..+|+|.+|||+. .+||||+||++||||+||++||.++.|.++++|..||+|||+|||+||+
T Consensus 222 ~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~YNp 301 (640)
T KOG1474|consen 222 ELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCMTYNP 301 (640)
T ss_pred HHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHHhcCC
Confidence 34567889999999999999999999998 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 007651 101 PDTIYFRQARSIHELAKKNFENLRQDSDDN 130 (594)
Q Consensus 101 pdS~i~k~Ak~Le~lfek~~~~L~~d~e~~ 130 (594)
++++||.+|+.|+++|+.+|..+....+..
T Consensus 302 ~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~ 331 (640)
T KOG1474|consen 302 EGSDVYAMAKKLQEVFEERWASMPLEIEES 331 (640)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 999999999999999999999987665443
No 15
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.4e-23 Score=183.25 Aligned_cols=95 Identities=31% Similarity=0.493 Sum_probs=91.5
Q ss_pred cchHHHHHHHHhCCCCCCCcCCCCCC--CCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCC
Q 007651 26 NWDPQRLYQIKSYCCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 103 (594)
Q Consensus 26 ~wc~qIL~kLk~~~~A~~F~ePVD~~--e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS 103 (594)
..|.+||.+|++++.+++|..||++. .+|+|+++|++||||+||++||+++.|.++++|..||+|||.||+.||++++
T Consensus 3 ~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~s 82 (99)
T cd05506 3 KQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPGN 82 (99)
T ss_pred HHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 46899999999999999999999987 6999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007651 104 IYFRQARSIHELAKKNF 120 (594)
Q Consensus 104 ~i~k~Ak~Le~lfek~~ 120 (594)
.++++|..|+..|++.|
T Consensus 83 ~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 83 DVHTMAKELLKIFETRW 99 (99)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999999998864
No 16
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.1e-23 Score=185.33 Aligned_cols=90 Identities=38% Similarity=0.590 Sum_probs=86.5
Q ss_pred hHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHHH
Q 007651 28 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 107 (594)
Q Consensus 28 c~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~k 107 (594)
+..+|.+|++++.+++|.+|||..++|||+++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.+|+
T Consensus 6 l~~il~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~~ 85 (98)
T cd05512 6 LRKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKDTIFYR 85 (98)
T ss_pred HHHHHHHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 007651 108 QARSIHELAK 117 (594)
Q Consensus 108 ~Ak~Le~lfe 117 (594)
+|.+|++..+
T Consensus 86 ~A~~l~~~~~ 95 (98)
T cd05512 86 AAVRLRDQGG 95 (98)
T ss_pred HHHHHHHhhc
Confidence 9999988654
No 17
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=1.9e-23 Score=183.54 Aligned_cols=95 Identities=33% Similarity=0.542 Sum_probs=91.1
Q ss_pred cchHHHHHHHHhC---CCCCCCcCCCCCC--CCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcC
Q 007651 26 NWDPQRLYQIKSY---CCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNA 100 (594)
Q Consensus 26 ~wc~qIL~kLk~~---~~A~~F~ePVD~~--e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~ 100 (594)
..|.+||..|+++ +.+++|.+||++. .+|+|+++|++||||++|++||+++.|.++++|..||+|||.||+.||+
T Consensus 3 ~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn~ 82 (102)
T cd05498 3 KFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYNP 82 (102)
T ss_pred hHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 5689999999999 8899999999987 5999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 007651 101 PDTIYFRQARSIHELAKKNF 120 (594)
Q Consensus 101 pdS~i~k~Ak~Le~lfek~~ 120 (594)
+++.++.+|..|++.|++.|
T Consensus 83 ~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 83 PDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999865
No 18
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=1.8e-23 Score=184.65 Aligned_cols=95 Identities=23% Similarity=0.474 Sum_probs=91.4
Q ss_pred ccchHHHHHHHHhCCCCCCCcCCCCCC--CCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCC
Q 007651 25 WNWDPQRLYQIKSYCCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 102 (594)
Q Consensus 25 ~~wc~qIL~kLk~~~~A~~F~ePVD~~--e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pd 102 (594)
.++|.+||.+|++++.+++|.+|||+. .+|+|+++|++||||+||++||+++.|.++++|..||+|||.||+.||+++
T Consensus 6 ~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 85 (103)
T cd05500 6 HKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFNGPE 85 (103)
T ss_pred HHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 457889999999999999999999987 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 007651 103 TIYFRQARSIHELAKKN 119 (594)
Q Consensus 103 S~i~k~Ak~Le~lfek~ 119 (594)
+.++.+|+.|++.|++.
T Consensus 86 s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 86 HPVSQMGKRLQAAFEKH 102 (103)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999875
No 19
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.89 E-value=3.2e-23 Score=186.59 Aligned_cols=97 Identities=30% Similarity=0.409 Sum_probs=91.7
Q ss_pred hHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCC----C
Q 007651 28 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD----T 103 (594)
Q Consensus 28 c~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pd----S 103 (594)
+.+||.+|++++.+++|.+|||+.++||||++|++||||+||++||+++.|.++++|.+||+|||.||+.||+++ +
T Consensus 8 L~~il~~l~~~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~~~s 87 (112)
T cd05528 8 LRDVLKRLASDKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPDRDPADK 87 (112)
T ss_pred HHHHHHHHHhCCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCCCCCcccc
Confidence 346689999999999999999999999999999999999999999999999999999999999999999999995 6
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 007651 104 IYFRQARSIHELAKKNFENLR 124 (594)
Q Consensus 104 ~i~k~Ak~Le~lfek~~~~L~ 124 (594)
.++.+|..|++.|++++++..
T Consensus 88 ~i~~~A~~L~~~~~~~~~~~~ 108 (112)
T cd05528 88 LIRSRACELRDEVHAMIEAEL 108 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999998754
No 20
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=4.6e-23 Score=185.26 Aligned_cols=99 Identities=28% Similarity=0.537 Sum_probs=95.4
Q ss_pred hHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHHH
Q 007651 28 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 107 (594)
Q Consensus 28 c~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~k 107 (594)
..+||.+|++++.+.+|.+|||+..+|+||++|++||||+||++||+++.|+++++|..||+|||.||+.||++++.+++
T Consensus 5 l~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~~ 84 (112)
T cd05511 5 LDEIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSVYTK 84 (112)
T ss_pred HHHHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcC
Q 007651 108 QARSIHELAKKNFENLRQD 126 (594)
Q Consensus 108 ~Ak~Le~lfek~~~~L~~d 126 (594)
+|..|+..|++.++.+++.
T Consensus 85 ~A~~l~~~~~~~~~~~~~~ 103 (112)
T cd05511 85 KAKEMLELAEELLAEREEK 103 (112)
T ss_pred HHHHHHHHHHHHHHHhHHH
Confidence 9999999999999988654
No 21
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=7.9e-23 Score=181.78 Aligned_cols=95 Identities=24% Similarity=0.324 Sum_probs=89.8
Q ss_pred cchHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHH
Q 007651 26 NWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIY 105 (594)
Q Consensus 26 ~wc~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i 105 (594)
..|..||.+|.+++.+++|.. ++..+|||+++|++||||+||++||.++.|.++++|.+||+|||+||+.||+++ .+
T Consensus 5 ~~ce~il~~l~~~~~s~~f~~--~p~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~-~~ 81 (102)
T cd05501 5 LKCEFLLLKVYCMSKSGFFIS--KPYYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD-DF 81 (102)
T ss_pred HHHHHHHHHHHhCcccccccC--CCCCCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC-HH
Confidence 458899999999999999966 356899999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 007651 106 FRQARSIHELAKKNFENL 123 (594)
Q Consensus 106 ~k~Ak~Le~lfek~~~~L 123 (594)
+++|..|++.|++.++++
T Consensus 82 ~~~a~~L~~~Fek~~~~~ 99 (102)
T cd05501 82 GQVGITLEKKFEKNFKEV 99 (102)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999875
No 22
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.1e-22 Score=181.33 Aligned_cols=96 Identities=25% Similarity=0.484 Sum_probs=89.9
Q ss_pred hHHHHHHHHhCCC------CCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCC
Q 007651 28 DPQRLYQIKSYCC------SSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 101 (594)
Q Consensus 28 c~qIL~kLk~~~~------A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~p 101 (594)
|..||..|.++.+ +++|.+||+...+||||++|++||||+||++||+++.|.++++|..||.|||.||+.||.+
T Consensus 6 ~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 85 (107)
T cd05516 6 MNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQTFNLE 85 (107)
T ss_pred HHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4577777777776 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhh
Q 007651 102 DTIYFRQARSIHELAKKNFENL 123 (594)
Q Consensus 102 dS~i~k~Ak~Le~lfek~~~~L 123 (594)
++.+|++|..|++.|+..++++
T Consensus 86 ~s~i~~~a~~l~~~f~~~~~~~ 107 (107)
T cd05516 86 GSLIYEDSIVLQSVFKSARQKI 107 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999888753
No 23
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=2.4e-22 Score=181.00 Aligned_cols=101 Identities=22% Similarity=0.311 Sum_probs=93.5
Q ss_pred cchHHHHHHHHhCC------CCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhc
Q 007651 26 NWDPQRLYQIKSYC------CSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYN 99 (594)
Q Consensus 26 ~wc~qIL~kLk~~~------~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN 99 (594)
..|.+||..|+++. .+.+|.++++...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||
T Consensus 5 ~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN 84 (113)
T cd05524 5 AVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAYY 84 (113)
T ss_pred HHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 46788999998654 457899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhcC
Q 007651 100 APDTIYFRQARSIHELAKKNFENLRQD 126 (594)
Q Consensus 100 ~pdS~i~k~Ak~Le~lfek~~~~L~~d 126 (594)
++++.+|++|..|++.|++.++++...
T Consensus 85 ~~~s~~~~~A~~L~~~f~~~~~~~~~~ 111 (113)
T cd05524 85 KPDSPEHKDACKLWELFLSARNEVLSG 111 (113)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999888654
No 24
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=5.2e-22 Score=175.37 Aligned_cols=93 Identities=24% Similarity=0.381 Sum_probs=86.1
Q ss_pred hHHHHHHHHh------CCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCC
Q 007651 28 DPQRLYQIKS------YCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 101 (594)
Q Consensus 28 c~qIL~kLk~------~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~p 101 (594)
|.+|+..|.. +..+++|.+||+...+|+||++|++||||++|++||+++.|.++++|..||+|||.||+.||++
T Consensus 5 ~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~~ 84 (103)
T cd05519 5 MLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTYNQE 84 (103)
T ss_pred HHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5677777774 4458999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 007651 102 DTIYFRQARSIHELAKKNF 120 (594)
Q Consensus 102 dS~i~k~Ak~Le~lfek~~ 120 (594)
++.++.+|..|++.|++++
T Consensus 85 ~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 85 GSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999998764
No 25
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=9.5e-22 Score=180.66 Aligned_cols=96 Identities=26% Similarity=0.410 Sum_probs=90.8
Q ss_pred chHHHHHHHH---hCCCCCCCcCCCCCC-CCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCC
Q 007651 27 WDPQRLYQIK---SYCCSSSIDFKMDPE-ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 102 (594)
Q Consensus 27 wc~qIL~kLk---~~~~A~~F~ePVD~~-e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pd 102 (594)
.|+++|.+|. +++.+++|.+||+.. .+|+|+++|++||||+||++||+++.|+++++|..||+|||.||+.||+++
T Consensus 28 ~i~~~l~~l~~~~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~yN~~~ 107 (128)
T cd05529 28 RLISGLDKLLLSLQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAETFNEPN 107 (128)
T ss_pred HHHHHHHHHHhcccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 3457788888 899999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHh
Q 007651 103 TIYFRQARSIHELAKKNFEN 122 (594)
Q Consensus 103 S~i~k~Ak~Le~lfek~~~~ 122 (594)
+.++++|+.|+..|++++..
T Consensus 108 s~i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 108 SEIAKKAKRLSDWLLRILSS 127 (128)
T ss_pred CHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999988754
No 26
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=1.1e-21 Score=174.37 Aligned_cols=94 Identities=26% Similarity=0.445 Sum_probs=84.4
Q ss_pred hHHHHHHHHhC------CCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCC
Q 007651 28 DPQRLYQIKSY------CCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 101 (594)
Q Consensus 28 c~qIL~kLk~~------~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~p 101 (594)
|.+++..|..+ ..+++|.+||+.+++||||++|++||||+||++||+++.|.++++|..||.|||.||+.||++
T Consensus 5 ~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~yN~~ 84 (105)
T cd05515 5 LWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKYNEP 84 (105)
T ss_pred HHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 34455544443 558999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 007651 102 DTIYFRQARSIHELAKKNFE 121 (594)
Q Consensus 102 dS~i~k~Ak~Le~lfek~~~ 121 (594)
++.+|++|..|++.|.+..+
T Consensus 85 ~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 85 DSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred CCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999877653
No 27
>smart00297 BROMO bromo domain.
Probab=99.86 E-value=1.8e-21 Score=169.76 Aligned_cols=96 Identities=33% Similarity=0.562 Sum_probs=92.1
Q ss_pred chHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHH
Q 007651 27 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF 106 (594)
Q Consensus 27 wc~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~ 106 (594)
.|..|+..+.+++.+++|.+||+...+|+|+++|++||||.+|++||+++.|.++++|..||++||.||+.||++++.++
T Consensus 11 ~~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n~~~s~~~ 90 (107)
T smart00297 11 LLKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYNGPDSEVY 90 (107)
T ss_pred HHHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 007651 107 RQARSIHELAKKNFEN 122 (594)
Q Consensus 107 k~Ak~Le~lfek~~~~ 122 (594)
++|..|++.|++.+++
T Consensus 91 ~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 91 KDAKKLEKFFEKKLRE 106 (107)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998875
No 28
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=1.3e-21 Score=173.62 Aligned_cols=81 Identities=30% Similarity=0.554 Sum_probs=77.9
Q ss_pred CCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHH
Q 007651 39 CCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKK 118 (594)
Q Consensus 39 ~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~k~Ak~Le~lfek 118 (594)
..+++|.++|+...+||||++|++||||+||++||+++.|.++++|+.||+|||.||+.||++++.+|++|..|+.+|++
T Consensus 22 ~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~L~~~f~~ 101 (103)
T cd05520 22 LLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQKLMQA 101 (103)
T ss_pred CccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred H
Q 007651 119 N 119 (594)
Q Consensus 119 ~ 119 (594)
.
T Consensus 102 ~ 102 (103)
T cd05520 102 K 102 (103)
T ss_pred h
Confidence 3
No 29
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.85 E-value=2e-21 Score=172.51 Aligned_cols=92 Identities=26% Similarity=0.416 Sum_probs=85.0
Q ss_pred chHHHHHHHHhCCC------CCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcC
Q 007651 27 WDPQRLYQIKSYCC------SSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNA 100 (594)
Q Consensus 27 wc~qIL~kLk~~~~------A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~ 100 (594)
.|.+++..|.++.+ +.+|.++++..++||||++|++||||+||++||+++.|.++++|..||+|||.||+.||+
T Consensus 4 ~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~ 83 (103)
T cd05517 4 ILEQLLEAVMTATDPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTFNE 83 (103)
T ss_pred HHHHHHHHHHHhhCcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45677777766554 699999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 007651 101 PDTIYFRQARSIHELAKK 118 (594)
Q Consensus 101 pdS~i~k~Ak~Le~lfek 118 (594)
+++.++++|..|++.|+.
T Consensus 84 ~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 84 PGSQVYKDANAIKKIFTA 101 (103)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999999875
No 30
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=5.7e-21 Score=170.56 Aligned_cols=91 Identities=22% Similarity=0.310 Sum_probs=82.7
Q ss_pred HHHHHHHHhCC------CCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCC
Q 007651 29 PQRLYQIKSYC------CSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 102 (594)
Q Consensus 29 ~qIL~kLk~~~------~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pd 102 (594)
.+||..|.... .+++|.++++...+||||++|++||||+||++||+++.|.++++|..||.|||.||+.||+++
T Consensus 8 ~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~yn~~~ 87 (106)
T cd05525 8 KEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEKYYGRK 87 (106)
T ss_pred HHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 35555555543 479999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 007651 103 TIYFRQARSIHELAKKN 119 (594)
Q Consensus 103 S~i~k~Ak~Le~lfek~ 119 (594)
+.++++|..|++.|++.
T Consensus 88 S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 88 SPIGRDVCRLRKAYYQA 104 (106)
T ss_pred CHHHHHHHHHHHHHHHc
Confidence 99999999999998753
No 31
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.84 E-value=4.4e-21 Score=170.39 Aligned_cols=82 Identities=26% Similarity=0.415 Sum_probs=78.7
Q ss_pred hCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHH
Q 007651 37 SYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELA 116 (594)
Q Consensus 37 ~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~k~Ak~Le~lf 116 (594)
.+..+.+|..+|+...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.+|++|..|+.+|
T Consensus 20 gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~le~~~ 99 (103)
T cd05518 20 GRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYNEEGSQVYEDANILEKVL 99 (103)
T ss_pred CCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HH
Q 007651 117 KK 118 (594)
Q Consensus 117 ek 118 (594)
++
T Consensus 100 ~~ 101 (103)
T cd05518 100 KE 101 (103)
T ss_pred Hh
Confidence 75
No 32
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.84 E-value=5e-21 Score=160.24 Aligned_cols=84 Identities=42% Similarity=0.686 Sum_probs=80.2
Q ss_pred hHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHHH
Q 007651 28 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 107 (594)
Q Consensus 28 c~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~k 107 (594)
|.+||..|.+++.+.+|..||+...+|+|+++|++||||++|++||+++.|+++++|..||++||.||+.||++++.+|+
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~~ 80 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPIYK 80 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 007651 108 QARS 111 (594)
Q Consensus 108 ~Ak~ 111 (594)
+|++
T Consensus 81 ~A~~ 84 (84)
T PF00439_consen 81 AAEK 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9974
No 33
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.84 E-value=3.4e-21 Score=223.09 Aligned_cols=283 Identities=27% Similarity=0.316 Sum_probs=193.4
Q ss_pred HHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHHHHH
Q 007651 30 QRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQA 109 (594)
Q Consensus 30 qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~k~A 109 (594)
.+|.+++..+..++|.+|||+.++|||.+||++||||.||+.+++.+.|+++++|+.|+.||+.||+.||..++.+|++|
T Consensus 572 ~~l~~lq~kD~~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn~~dtv~~r~a 651 (1051)
T KOG0955|consen 572 KSLDKLQKKDSYGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYNAKDTVYYRAA 651 (1051)
T ss_pred HHHHHhhcccccCceeeccChhhcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhhccCeehHhhh
Confidence 66889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCC-cccc--------ccccCCCCCCCCCCCCCCCccccccCCCCCccccccCCCCCcccc
Q 007651 110 RSIHELAKKNFENLRQDSDDNE-PETK--------VVRRGRPPTKNFKKPLGRPSLERARSDFSSDVTLASGAENTALTN 180 (594)
Q Consensus 110 k~Le~lfek~~~~L~~d~e~~E-~epk--------v~rr~Rpp~k~~KK~~~rps~e~~~sd~SsdatlA~gge~~~~s~ 180 (594)
..++++..+.+.+.+.+.+... .+.. +.+..++.................-.+.+.+.-+...-+..
T Consensus 652 v~~~e~~~~~~~~arke~e~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~e~~~~~~~e~~~~~~~~~~---- 727 (1051)
T KOG0955|consen 652 VRLRELIKKDFRNARKEPESEGLLDRESLSHHDHLVKKLERPYRPNLWAPEEPQVDLETFINLSKEHDLKIPLDKN---- 727 (1051)
T ss_pred HHHHhhhhhHHHhcccchhhhcccchhhhcccchhhhhhccCCccccccccccccccccccccChhhhhccccccc----
Confidence 9999999999999988766544 2221 11223333333322222211111112222211111100000
Q ss_pred cccC-CCCCCCCCCcccCccccCCCCCCCccccccccccccc--cccc--ccccCCccCCCCcccccccccccccccccc
Q 007651 181 RDLG-NGTPHLEKSGFTDSSRRFSGSWNDLYTGCLAENKLER--NDEV--SLSKGYSMKHGKKQVVLDENRRNTYKQFHQ 255 (594)
Q Consensus 181 ~d~r-~~~~~~~k~g~~~~~~~~~g~~~~~~~~~~~~~~~e~--~~e~--s~~~g~~~K~G~k~~~~de~RR~TY~~~~~ 255 (594)
+.+ .+.....+.......+ ++-++ ..-|.+ ..-|. ..+. +..+++ .|+|.+. .+++.+|.+..+
T Consensus 728 -~~~~a~~~~~~~~~~~~~~~-~~~s~---~r~~~~-~~~e~~~~~~~p~~~~~~~-~~~~~~~----~~~~~~~~~~~s 796 (1051)
T KOG0955|consen 728 -EKKKATKLSIPRNRDSRIIR-KEKSR---LRKCGI-VDTETSGSPSIPSGGEKTV-KKDGLNS----KNLKMSSDQALS 796 (1051)
T ss_pred -hhhhhhhcccccccccccch-hhHHH---HhhccC-cCccccCCCCCCCccccch-hcccccc----cccccccchhhc
Confidence 000 0000000000000000 00000 000111 00010 0000 112232 3455553 689999999877
Q ss_pred cccCCcccccccccccceeEeccCCcchhHHHHHHHHHhhChHHHHHHHHHhhhhCCCCCccCCcccccCCC
Q 007651 256 SLRESSVLTTFDADKKQLMTVGLHSEHGYTRSLARFAANLGPVAWKIAARRIERCLPAGVRFGPGWVVENDL 327 (594)
Q Consensus 256 ~~~~~sv~~~~~~e~K~Lv~vg~~~e~~YArSLarFaa~lGp~aw~iAs~rI~~~Lp~g~~FG~GWVge~e~ 327 (594)
+-.++++++.+..+.|++-|+++-.+.+|+||+++.+++.+++||.+|+.+++..++.+..||.||+++...
T Consensus 797 ~p~~~~~~sp~~~~~~~~~p~~l~~~s~~~~sn~~l~~n~t~~~~~~~~~~~~~~~~~~~~~g~g~~~~tP~ 868 (1051)
T KOG0955|consen 797 SPPSEPLGSPYNDSVKGVKPSVLLEKSGLLRSNANLSQNPTASANNLASTSCSVTKATFTGNGVGGDVKTPK 868 (1051)
T ss_pred CCCCCCCCCCccccccccCchhhHhhccccccccccccCCCcccccccccccccccCCccCCCCCccccCCC
Confidence 788999999999999999999999999999999999999999999999999999999999999999666544
No 34
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.83 E-value=1e-20 Score=159.24 Aligned_cols=94 Identities=40% Similarity=0.606 Sum_probs=90.0
Q ss_pred cchHHHHHHHHhC--CCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCC
Q 007651 26 NWDPQRLYQIKSY--CCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 103 (594)
Q Consensus 26 ~wc~qIL~kLk~~--~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS 103 (594)
.+|..++..+..+ +.+.+|..||++..+|+|+++|++||||.+|++||+++.|.++++|..||+|||.||+.||+.++
T Consensus 3 ~~~~~i~~~l~~~~~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~~ 82 (99)
T cd04369 3 KKLRSLLDALKKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGS 82 (99)
T ss_pred HHHHHHHHHHHhhcccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 3577899999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 007651 104 IYFRQARSIHELAKKN 119 (594)
Q Consensus 104 ~i~k~Ak~Le~lfek~ 119 (594)
.++++|..|+..|++.
T Consensus 83 ~~~~~a~~l~~~~~~~ 98 (99)
T cd04369 83 PIYKDAKKLEKLFEKL 98 (99)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998875
No 35
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=4.4e-20 Score=163.97 Aligned_cols=82 Identities=22% Similarity=0.376 Sum_probs=78.6
Q ss_pred CCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHH
Q 007651 38 YCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAK 117 (594)
Q Consensus 38 ~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~k~Ak~Le~lfe 117 (594)
+..+.+|.++|+.+.+||||++|++||||++|++||+++.|.++++|..||+|||.||+.||++++.+|.+|..|+..|+
T Consensus 22 ~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~i~~~A~~l~~~f~ 101 (104)
T cd05522 22 RLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYNENDSQEYKDAVLLEKEAR 101 (104)
T ss_pred CcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HH
Q 007651 118 KN 119 (594)
Q Consensus 118 k~ 119 (594)
+.
T Consensus 102 ~l 103 (104)
T cd05522 102 LL 103 (104)
T ss_pred Hh
Confidence 63
No 36
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.81 E-value=1.2e-19 Score=162.21 Aligned_cols=92 Identities=20% Similarity=0.311 Sum_probs=81.9
Q ss_pred hHHHHHHHHhCCC------CCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCC
Q 007651 28 DPQRLYQIKSYCC------SSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 101 (594)
Q Consensus 28 c~qIL~kLk~~~~------A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~p 101 (594)
|.+++..|++..+ +.+|..+++.+.+||||++|++||||+||++||++ |.++++|+.||.|||+||+.||++
T Consensus 6 ~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~yN~~ 83 (106)
T cd05521 6 LKPLYDGIYTLKEENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARLYNTK 83 (106)
T ss_pred HHHHHHHHHhhcCcCCCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHcCC
Confidence 3455555555544 56999999999999999999999999999999998 999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 007651 102 DTIYFRQARSIHELAKKNFE 121 (594)
Q Consensus 102 dS~i~k~Ak~Le~lfek~~~ 121 (594)
++.+|++|..|++.|.+.+.
T Consensus 84 ~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 84 GSVIYKYALILEKYINDVII 103 (106)
T ss_pred CCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999987653
No 37
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.80 E-value=3e-19 Score=160.59 Aligned_cols=95 Identities=20% Similarity=0.328 Sum_probs=85.8
Q ss_pred HHHHHHHh-CCCCCCCcCCCCCC-----CCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCC
Q 007651 30 QRLYQIKS-YCCSSSIDFKMDPE-----ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 103 (594)
Q Consensus 30 qIL~kLk~-~~~A~~F~ePVD~~-----e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS 103 (594)
.++..+++ .+.+.+|..||... .+|+|+++|++||||+||++||+++.|++++||..||.|||+||+.||++++
T Consensus 7 f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~s 86 (109)
T cd05492 7 FIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGADS 86 (109)
T ss_pred HHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 45677777 66789999999633 5999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 007651 104 IYFRQARSIHELAKKNFENLR 124 (594)
Q Consensus 104 ~i~k~Ak~Le~lfek~~~~L~ 124 (594)
.++.+|+.|.......+.+|.
T Consensus 87 ~~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 87 EQYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999888877777764
No 38
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.66 E-value=3.8e-16 Score=140.90 Aligned_cols=93 Identities=16% Similarity=0.254 Sum_probs=81.3
Q ss_pred HHHHHHHhCC------CCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCC
Q 007651 30 QRLYQIKSYC------CSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 103 (594)
Q Consensus 30 qIL~kLk~~~------~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS 103 (594)
.++..++++. .+.+|.+.+. ..++|+.+|++||||.+|++||++|.|+++++|.+||.|||.||++||.+++
T Consensus 10 ~l~~~V~~~~D~~Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~yN~~~S 87 (110)
T cd05526 10 TLFVSVMNHQDEEGRCYSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERARRLSRTDS 87 (110)
T ss_pred HHHHHHHhccCCCCCCchHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHHhCcccC
Confidence 3345555554 3788888877 4567889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 007651 104 IYFRQARSIHELAKKNFENLR 124 (594)
Q Consensus 104 ~i~k~Ak~Le~lfek~~~~L~ 124 (594)
.+|++|..|+..|.+...++-
T Consensus 88 ~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 88 EIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999988877664
No 39
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.65 E-value=1.9e-16 Score=167.58 Aligned_cols=90 Identities=32% Similarity=0.500 Sum_probs=85.2
Q ss_pred CCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHH
Q 007651 38 YCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAK 117 (594)
Q Consensus 38 ~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~k~Ak~Le~lfe 117 (594)
.....+|..+|+...+|+||.||+.||||.+|++||+.+.|+++++|..|+.|||+||..||.+++.+|.+|+.|+..|.
T Consensus 163 ~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~~ 242 (371)
T COG5076 163 RFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYFL 242 (371)
T ss_pred cccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHHHH
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCC
Q 007651 118 KNFENLRQDS 127 (594)
Q Consensus 118 k~~~~L~~d~ 127 (594)
+.++.+....
T Consensus 243 ~~i~~~~~~~ 252 (371)
T COG5076 243 KLIEEIPEEM 252 (371)
T ss_pred HHHHhccccc
Confidence 9999886543
No 40
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.62 E-value=4.8e-16 Score=186.18 Aligned_cols=95 Identities=26% Similarity=0.459 Sum_probs=91.5
Q ss_pred hHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHHH
Q 007651 28 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 107 (594)
Q Consensus 28 c~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~k 107 (594)
|..||.+|..|+.||||++||++.++||||+||++||||+||+.|+..+.|.+.++|..||.|||.||..||.. +.+++
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i~~ 1384 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEIGR 1384 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhhhh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHhh
Q 007651 108 QARSIHELAKKNFENL 123 (594)
Q Consensus 108 ~Ak~Le~lfek~~~~L 123 (594)
+...|..+|++.+...
T Consensus 1385 ag~~l~~ff~~~~~~~ 1400 (1404)
T KOG1245|consen 1385 AGTCLRRFFHKRWRKK 1400 (1404)
T ss_pred hcchHHHHHHHHHHhh
Confidence 9999999999866543
No 41
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.39 E-value=1.9e-13 Score=154.22 Aligned_cols=97 Identities=29% Similarity=0.476 Sum_probs=92.3
Q ss_pred hHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHHH
Q 007651 28 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 107 (594)
Q Consensus 28 c~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~k 107 (594)
...+|.+|..|..+|+|.+||+.+++||||++|++||||.||+.+|.++.|...+.|+.|+.+||.||++||+.++.+|+
T Consensus 611 ~~~il~~l~~h~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~~~~y~k 690 (720)
T KOG1472|consen 611 IQNILDQLQNHGDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGSDTQYYK 690 (720)
T ss_pred HHhHHhhhhcCCccCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCccchhee
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 007651 108 QARSIHELAKKNFENLR 124 (594)
Q Consensus 108 ~Ak~Le~lfek~~~~L~ 124 (594)
.|..|...|...+....
T Consensus 691 ~~~~le~~~~~k~~~~i 707 (720)
T KOG1472|consen 691 CAQALEKFFLFKLNELI 707 (720)
T ss_pred cccchhhhhcchhhhhh
Confidence 99999999988777653
No 42
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.19 E-value=6e-12 Score=114.11 Aligned_cols=77 Identities=19% Similarity=0.155 Sum_probs=65.2
Q ss_pred ccchHHHHHHHHhCCCCCCCcCCCCC--CCCCCcccccCCccCHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHHh
Q 007651 25 WNWDPQRLYQIKSYCCSSSIDFKMDP--EELPDYCEVIEHPMDFGTVRNKLANG-------AYATLEQFEKDVFLICSNA 95 (594)
Q Consensus 25 ~~wc~qIL~kLk~~~~A~~F~ePVD~--~e~PDY~dIIK~PMDLsTIkkKL~~g-------~Y~SieEF~~DVrLIf~NA 95 (594)
+.||+++|+++.++..+++|.+|||+ ..+|||+++||+||||+||++||.++ .|..-+.+.+++..++.||
T Consensus 5 ~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (114)
T cd05494 5 LERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGRR 84 (114)
T ss_pred HHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccccccc
Confidence 46788889999999999999999999 78999999999999999999999997 4555555667777777777
Q ss_pred hhhcCC
Q 007651 96 MQYNAP 101 (594)
Q Consensus 96 ~~YN~p 101 (594)
..+|..
T Consensus 85 ~~~~~~ 90 (114)
T cd05494 85 SPSNIY 90 (114)
T ss_pred Cccccc
Confidence 777664
No 43
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.95 E-value=1e-09 Score=100.49 Aligned_cols=42 Identities=33% Similarity=0.449 Sum_probs=40.1
Q ss_pred CccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCC
Q 007651 62 HPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 103 (594)
Q Consensus 62 ~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS 103 (594)
.||||+||++||.+|.|.++++|++||+|||+||+.||.++.
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~dr 104 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRER 104 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 689999999999999999999999999999999999998754
No 44
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.89 E-value=1.4e-09 Score=127.98 Aligned_cols=93 Identities=28% Similarity=0.457 Sum_probs=86.6
Q ss_pred HHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHHHHH
Q 007651 30 QRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQA 109 (594)
Q Consensus 30 qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~k~A 109 (594)
.|+.++++...+|+|.+||+.+.+|+||.+|++||||.+|.+++..+.|.+..+|.+||++|+.||..||+.++.|.+-|
T Consensus 1389 ~~vs~~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~~k~ 1468 (1563)
T KOG0008|consen 1389 NIVSQMKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAYTKKA 1468 (1563)
T ss_pred hHHHHHHhcchhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCccccccHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 007651 110 RSIHELAKKNFEN 122 (594)
Q Consensus 110 k~Le~lfek~~~~ 122 (594)
+++-++....+.+
T Consensus 1469 ~k~~ev~~~~~~e 1481 (1563)
T KOG0008|consen 1469 RKIGEVGLANLLE 1481 (1563)
T ss_pred HHHHHHHHHHHHH
Confidence 9988877655544
No 45
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.74 E-value=1.2e-08 Score=118.24 Aligned_cols=98 Identities=21% Similarity=0.349 Sum_probs=88.7
Q ss_pred hHHHHHHHH------hCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCC
Q 007651 28 DPQRLYQIK------SYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 101 (594)
Q Consensus 28 c~qIL~kLk------~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~p 101 (594)
|..|+...+ .+..+..|...+..+.+||||+||++||++..|+++|++..|.+..+...|+.++|.||+.||..
T Consensus 1029 ~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~~e 1108 (1157)
T KOG0386|consen 1029 ALKIASTSIKYKDSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYNEE 1108 (1157)
T ss_pred HHHHHHHHHhcccccccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhhccC
Confidence 455655555 34457899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhc
Q 007651 102 DTIYFRQARSIHELAKKNFENLRQ 125 (594)
Q Consensus 102 dS~i~k~Ak~Le~lfek~~~~L~~ 125 (594)
++.+|..|..|+.++......+..
T Consensus 1109 gs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1109 GSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred CceechhHHHHHHHHhhhHHHHhc
Confidence 999999999999999988888765
No 46
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.69 E-value=3.4e-08 Score=110.91 Aligned_cols=81 Identities=23% Similarity=0.489 Sum_probs=76.8
Q ss_pred CCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHH
Q 007651 41 SSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNF 120 (594)
Q Consensus 41 A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~k~Ak~Le~lfek~~ 120 (594)
...|.+..+..+.|+||.+|..||.|..|++|+..+.|.+++.|+.|++||+.||..||.+++.+|+++..|+..|....
T Consensus 76 ~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~ena~~~n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 76 FDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTENARLYNRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred chhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhhhcchhhhh
Confidence 67799999999999999999999999999999999999999999999999999999999999999999999999887655
Q ss_pred H
Q 007651 121 E 121 (594)
Q Consensus 121 ~ 121 (594)
.
T Consensus 156 ~ 156 (629)
T KOG1827|consen 156 D 156 (629)
T ss_pred c
Confidence 4
No 47
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.62 E-value=4.2e-09 Score=111.80 Aligned_cols=97 Identities=26% Similarity=0.268 Sum_probs=90.3
Q ss_pred ccchHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCH
Q 007651 25 WNWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI 104 (594)
Q Consensus 25 ~~wc~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~ 104 (594)
..|..++++++-+.+.-..|..||...-.|+|.+||+.|||+.|++.|++.++|.++.+|..|.++|+.||..||..++.
T Consensus 21 ~~~~ehhlrkl~sKdp~q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv 100 (418)
T KOG1828|consen 21 SGDAEHHLRKLPSKDPKQKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTV 100 (418)
T ss_pred hhhHHHHHHhccccChhhhhccccchhhccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCcc
Confidence 34667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007651 105 YFRQARSIHELAKKNFE 121 (594)
Q Consensus 105 i~k~Ak~Le~lfek~~~ 121 (594)
++..|++|..+....+.
T Consensus 101 ~~~aaKrL~~v~~~~~q 117 (418)
T KOG1828|consen 101 PIVAAKRLCPVRLGMTQ 117 (418)
T ss_pred ccccccccchhhcchhh
Confidence 99999999887655553
No 48
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.53 E-value=1.1e-07 Score=112.64 Aligned_cols=87 Identities=29% Similarity=0.413 Sum_probs=82.0
Q ss_pred HHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHHHHH
Q 007651 30 QRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQA 109 (594)
Q Consensus 30 qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~k~A 109 (594)
.|+.++.......+|..||+.++++|||.||+.||||.++|+.|....|.+-++|..|+.||++|..+||++.+.+..++
T Consensus 1268 ~i~n~~~~~~~t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~~~t~~~ 1347 (1563)
T KOG0008|consen 1268 TIINQARSSPNTYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLASLTRQQ 1347 (1563)
T ss_pred HHHHHHhcCCCCcCCCCccchhhccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchHHHHHHH
Confidence 66788999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHH
Q 007651 110 RSIHELA 116 (594)
Q Consensus 110 k~Le~lf 116 (594)
..+..++
T Consensus 1348 q~mls~~ 1354 (1563)
T KOG0008|consen 1348 QSMLSLC 1354 (1563)
T ss_pred HHHHHHH
Confidence 8776654
No 49
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.46 E-value=1.1e-07 Score=108.18 Aligned_cols=72 Identities=31% Similarity=0.504 Sum_probs=66.5
Q ss_pred hCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHHHH
Q 007651 37 SYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 108 (594)
Q Consensus 37 ~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~k~ 108 (594)
++..+++|.++|+.+..|+||.||+.||||.++.+|+..+.|.+.++|+.|+.+||.||..||.........
T Consensus 300 ~~~~s~~~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~~~~~ 371 (720)
T KOG1472|consen 300 RTEHSTPFLEKVSKEDAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEESHGLIE 371 (720)
T ss_pred ccccccccccCCChhhCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccchhhhh
Confidence 467899999999999999999999999999999999999999999999999999999999999986554443
No 50
>PF12024 DUF3512: Domain of unknown function (DUF3512); InterPro: IPR021900 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 231 to 249 amino acids in length. This domain is found associated with PF00439 from PFAM.
Probab=98.33 E-value=1.9e-07 Score=94.83 Aligned_cols=125 Identities=18% Similarity=0.222 Sum_probs=89.1
Q ss_pred ccCCCCCCCCCCcccCccccCCCCCCCccccccccccccccccc----ccccCCccCCCCccc-cccccccccccccc--
Q 007651 182 DLGNGTPHLEKSGFTDSSRRFSGSWNDLYTGCLAENKLERNDEV----SLSKGYSMKHGKKQV-VLDENRRNTYKQFH-- 254 (594)
Q Consensus 182 d~r~~~~~~~k~g~~~~~~~~~g~~~~~~~~~~~~~~~e~~~e~----s~~~g~~~K~G~k~~-~~de~RR~TY~~~~-- 254 (594)
+...+..+..++||...- .+|+...... ...++..+.+++. +.+.|+ +..|-..+ +|.|+||+..+|..
T Consensus 44 ~rl~~~~~~~k~gFlr~~--~DGtt~l~vl-n~~~~~~~~~~~~pV~Lg~l~gk-L~~G~~tL~gfkEdrrnkvtpv~yl 119 (245)
T PF12024_consen 44 DRLNRRLPNSKMGFLRRK--KDGTTTLNVL-NPVDPEAGEEEYRPVDLGSLSGK-LQSGTNTLQGFKEDRRNKVTPVSYL 119 (245)
T ss_pred HHHhhcccccccchhccc--CCCCEEEEEe-ecCCCCCCCCCCceeeHHHhhcc-ccCCcccccccchhhccceeeeccc
Confidence 344444566778887653 3676422111 1123332222222 788898 45898777 89999999988842
Q ss_pred ----cc---ccCCcccccccccccceeEeccCCcch--hHHHHHHHHHhhChHHHHHHHHHhhhh
Q 007651 255 ----QS---LRESSVLTTFDADKKQLMTVGLHSEHG--YTRSLARFAANLGPVAWKIAARRIERC 310 (594)
Q Consensus 255 ----~~---~~~~sv~~~~~~e~K~Lv~vg~~~e~~--YArSLarFaa~lGp~aw~iAs~rI~~~ 310 (594)
.+ -...|.|+++..|.-+||+..|+.+++ ||.||.+|++++|-++.+||..-|...
T Consensus 120 ~YGpfsS~AP~yDStfa~lskeesdLiystYGd~t~~~~a~Si~eFv~~~~~y~~~~vd~LLD~l 184 (245)
T PF12024_consen 120 NYGPFSSFAPTYDSTFANLSKEESDLIYSTYGDETGVQYAFSIQEFVKDCGSYAYKMVDDLLDVL 184 (245)
T ss_pred ccCccccccccccccccccCcchhhHHHhhcCCccCCchhHHHHHHhhcCchHHHHHHhhhhhhh
Confidence 12 445588888888999999999999998 999999999999999999998777654
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.27 E-value=4.2e-07 Score=96.91 Aligned_cols=82 Identities=17% Similarity=0.190 Sum_probs=77.6
Q ss_pred HHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHH
Q 007651 32 LYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARS 111 (594)
Q Consensus 32 L~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~k~Ak~ 111 (594)
+.++...+...+|..++....+|.|..+|++++|+.|+++|+.++.|.+ -+|..|..|||.||++||.+++.+|..|++
T Consensus 217 ~~kl~~~~p~~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyelank 295 (418)
T KOG1828|consen 217 EDKLNRVDPVAYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYELANK 295 (418)
T ss_pred HHHhcccCchhhhcccchhhhcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHHHHh
Confidence 5677777889999999999999999999999999999999999999999 899999999999999999999999999998
Q ss_pred HHH
Q 007651 112 IHE 114 (594)
Q Consensus 112 Le~ 114 (594)
+..
T Consensus 296 ~lh 298 (418)
T KOG1828|consen 296 QLH 298 (418)
T ss_pred hhh
Confidence 877
No 52
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.17 E-value=5e-07 Score=102.92 Aligned_cols=95 Identities=24% Similarity=0.374 Sum_probs=86.4
Q ss_pred HhCCCCCCCcCCCCCC--CCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHH
Q 007651 36 KSYCCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIH 113 (594)
Q Consensus 36 k~~~~A~~F~ePVD~~--e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~k~Ak~Le 113 (594)
..+..+++|..||+.. .+|+||.+|++|||+.||+.++.+..|....+..+|+..+|.||..||.+...++.++..++
T Consensus 5 ~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~ 84 (640)
T KOG1474|consen 5 RKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSLE 84 (640)
T ss_pred ccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccch
Confidence 3567899999999976 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCC
Q 007651 114 ELAKKNFENLRQDSDDN 130 (594)
Q Consensus 114 ~lfek~~~~L~~d~e~~ 130 (594)
..|.+....+..+..+.
T Consensus 85 ~~~~~~~~~~~~~~~d~ 101 (640)
T KOG1474|consen 85 KLFPKKLRSMPSDEEDK 101 (640)
T ss_pred hhcccccccccccccCC
Confidence 99988888777665444
No 53
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=96.86 E-value=0.00028 Score=75.51 Aligned_cols=91 Identities=29% Similarity=0.414 Sum_probs=82.6
Q ss_pred HHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHH
Q 007651 34 QIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIH 113 (594)
Q Consensus 34 kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~k~Ak~Le 113 (594)
....+..+|+|..++.....|+|+++|..+|++.+.+.++..+.|+..++|..|..++++||..||.....+++.+..+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (371)
T COG5076 274 NSQAHVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANVLE 353 (371)
T ss_pred ccccccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhccchh
Confidence 33555668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 007651 114 ELAKKNFENLR 124 (594)
Q Consensus 114 ~lfek~~~~L~ 124 (594)
+.+.+.+...+
T Consensus 354 ~~~~~~~~~~~ 364 (371)
T COG5076 354 DFVIKKTRLIR 364 (371)
T ss_pred hhHhhhhhhhh
Confidence 88877665543
No 54
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=95.86 E-value=0.014 Score=55.00 Aligned_cols=64 Identities=20% Similarity=0.300 Sum_probs=51.7
Q ss_pred CccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHhhhc
Q 007651 62 HPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQ 125 (594)
Q Consensus 62 ~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~k~Ak~Le~lfek~~~~L~~ 125 (594)
.|.||.-|++||+.|.|+++.+|.+||-.|+.-++.-.+...++-++-..++-+|.+.++.+-.
T Consensus 58 ~p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~ 121 (131)
T cd05493 58 PPLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFP 121 (131)
T ss_pred CcccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhcc
Confidence 3899999999999999999999999999999998877665555555545556677777776643
No 55
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=90.06 E-value=0.25 Score=58.33 Aligned_cols=64 Identities=17% Similarity=0.243 Sum_probs=51.5
Q ss_pred cccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHH
Q 007651 56 YCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKN 119 (594)
Q Consensus 56 Y~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~k~Ak~Le~lfek~ 119 (594)
|..--.-|..|..|+.+|++..|++.+.|..|+..|..||.+|-+-+.-+-..+..|...|.+.
T Consensus 1046 ~~~~fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~T 1109 (1113)
T KOG0644|consen 1046 VDNRFPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRT 1109 (1113)
T ss_pred cCCCCCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhh
Confidence 3344567899999999999999999999999999999999999888765555555555555443
No 56
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=85.87 E-value=0.58 Score=56.87 Aligned_cols=63 Identities=21% Similarity=0.227 Sum_probs=57.2
Q ss_pred CCCCCcCCCCCCC-----CCCcccccCCccCHHHHHHHHhCCCCCCHHHHHH--HHHHHHHHhhhhcCCC
Q 007651 40 CSSSIDFKMDPEE-----LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEK--DVFLICSNAMQYNAPD 102 (594)
Q Consensus 40 ~A~~F~ePVD~~e-----~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~--DVrLIf~NA~~YN~pd 102 (594)
....|..|+++.. +++|..+|+.+||+...-.|+..+.|.++.+|+. ++.|||.|++.||+..
T Consensus 532 ~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 532 SSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred cccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 3678888888653 5689999999999999999999999999999999 9999999999999974
No 57
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=71.24 E-value=1.1 Score=53.26 Aligned_cols=72 Identities=22% Similarity=0.336 Sum_probs=59.8
Q ss_pred CCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCC--------------C----------CHHH------HHHHHHHHH
Q 007651 43 SIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAY--------------A----------TLEQ------FEKDVFLIC 92 (594)
Q Consensus 43 ~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y--------------~----------SieE------F~~DVrLIf 92 (594)
.|.-++|....|-|+.+...|.+|+|++..|.+..| . ++.+ ..+-+.+|-
T Consensus 85 qlv~~~d~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~ 164 (1113)
T KOG0644|consen 85 QLVPMLDKPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIG 164 (1113)
T ss_pred HhccCcCCCCCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCcccc
Confidence 367788888999999999999999999999998877 3 3344 667888999
Q ss_pred HHhhhhcCCCCHHHHHHHHHHHH
Q 007651 93 SNAMQYNAPDTIYFRQARSIHEL 115 (594)
Q Consensus 93 ~NA~~YN~pdS~i~k~Ak~Le~l 115 (594)
.||+.++.|++ +++-++.+.++
T Consensus 165 ~at~~~akPgt-mvqkmk~ikrL 186 (1113)
T KOG0644|consen 165 CATFSIAKPGT-MVQKMKNIKRL 186 (1113)
T ss_pred cceeeecCcHH-HHHHHHHHHHH
Confidence 99999999999 67666766665
No 58
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=62.88 E-value=1.2 Score=51.42 Aligned_cols=75 Identities=11% Similarity=0.040 Sum_probs=66.9
Q ss_pred CCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHH
Q 007651 41 SSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHEL 115 (594)
Q Consensus 41 A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~k~Ak~Le~l 115 (594)
...|.+-+|.+.+|+||.+++-+|-+..+.+++..++|.....|..|+.+++.|+..|+....-++..+..|.+.
T Consensus 213 Ier~w~~~dg~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~ 287 (629)
T KOG1827|consen 213 IERLWKLPDGEKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEE 287 (629)
T ss_pred ecccccCcccccccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCccccccc
Confidence 455677777788999999999999999999999999999999999999999999999999988888887766553
No 59
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=38.75 E-value=1e+02 Score=27.46 Aligned_cols=48 Identities=17% Similarity=0.240 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 007651 76 GAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENL 123 (594)
Q Consensus 76 g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~k~Ak~Le~lfek~~~~L 123 (594)
..|.|..-|...+..|-.....++..+..+..+|..|++.|+|.|++.
T Consensus 4 ~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~ 51 (101)
T PF14372_consen 4 SSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDC 51 (101)
T ss_pred CCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 468888888888888888887777778889999999999999999754
No 60
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=33.03 E-value=70 Score=26.94 Aligned_cols=27 Identities=11% Similarity=0.364 Sum_probs=23.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007651 67 GTVRNKLANGAYATLEQFEKDVFLICS 93 (594)
Q Consensus 67 sTIkkKL~~g~Y~SieEF~~DVrLIf~ 93 (594)
..|+.+++.|.|.+..++++|..+++.
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999887665
No 61
>PRK10991 fucI L-fucose isomerase; Provisional
Probab=25.75 E-value=1.8e+02 Score=34.10 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=50.8
Q ss_pred HHHHHHHhCCC-------CCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhh
Q 007651 30 QRLYQIKSYCC-------SSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQ 97 (594)
Q Consensus 30 qIL~kLk~~~~-------A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~ 97 (594)
.++..|+.... ..+.---+|...+-+|+-|=-.++|+..|.+|++...|.. ++|++.+..+-+||..
T Consensus 165 ~aV~~LRg~syl~IG~rpmGf~ts~vne~~l~~~fGI~ve~VDmsEIirR~~~~~~d~-eE~e~al~wlk~~~~~ 238 (588)
T PRK10991 165 LAVASMKGKSYLSIGGVSMGIAGSIVDHNFFESYLGMRVEAVDMTELRRRIDQKIYDE-EELEMALAWAKKNCKE 238 (588)
T ss_pred HHHHHhcCCeEEEECCccCCccccccCHHHHHHHhCCEEEEeCHHHHHHHHHhccCCH-HHHHHHHHHHHHhccc
Confidence 55666666554 2222233444456688888889999999999999999988 6999999999999864
No 62
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=20.35 E-value=1.3e+02 Score=26.22 Aligned_cols=27 Identities=11% Similarity=0.389 Sum_probs=21.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007651 67 GTVRNKLANGAYATLEQFEKDVFLICS 93 (594)
Q Consensus 67 sTIkkKL~~g~Y~SieEF~~DVrLIf~ 93 (594)
.-|+.+|..|.|.+..|+++|...++.
T Consensus 15 ~~i~~~V~sG~Y~s~SEvvR~aLRlle 41 (80)
T PF03693_consen 15 AFIEEQVASGRYSSASEVVREALRLLE 41 (80)
T ss_dssp HHHHHHHCTTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 358999999999999999999765554
Done!