Query 007651
Match_columns 594
No_of_seqs 248 out of 1350
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 07:07:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007651.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007651hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g0l_A Hwalp4, bromodomain adj 99.9 3.9E-26 1.3E-30 203.8 11.6 102 24-125 14-115 (117)
2 1e6i_A Transcriptional activat 99.9 4.3E-26 1.5E-30 205.3 12.0 105 21-125 11-115 (121)
3 3d7c_A General control of amin 99.9 7.9E-26 2.7E-30 200.6 11.7 100 26-125 10-109 (112)
4 2d9e_A Peregrin; four-helix bu 99.9 4.6E-26 1.6E-30 205.3 10.4 101 26-126 10-110 (121)
5 4alg_A Bromodomain-containing 99.9 8.2E-26 2.8E-30 211.6 12.1 102 28-129 37-140 (154)
6 3jvl_A Bromodomain-containing 99.9 4.3E-26 1.5E-30 204.3 7.5 103 25-127 11-118 (120)
7 3nxb_A CAT eye syndrome critic 99.9 1.6E-25 5.4E-30 199.5 11.0 98 25-122 18-115 (116)
8 2oss_A HUNK1 protein, bromodom 99.9 1.8E-25 6E-30 203.0 11.5 99 28-126 26-126 (127)
9 2dat_A Possible global transcr 99.9 2.1E-25 7E-30 201.2 11.1 100 26-125 16-121 (123)
10 2i7k_A Bromodomain-containing 99.9 2.7E-25 9.3E-30 199.5 11.7 100 26-125 11-110 (117)
11 2grc_A Probable global transcr 99.9 1.5E-25 5.1E-30 203.8 10.0 106 26-131 14-126 (129)
12 2ouo_A HUNK1 protein, bromodom 99.9 1.4E-25 4.6E-30 204.5 9.7 101 25-125 24-129 (130)
13 2yyn_A Transcription intermedi 99.9 5.1E-25 1.7E-29 201.9 11.7 104 24-128 21-126 (135)
14 3hme_A Bromodomain-containing 99.9 5.8E-25 2E-29 198.5 11.8 99 26-124 16-114 (123)
15 3rcw_A Bromodomain-containing 99.9 8.6E-25 2.9E-29 199.7 12.9 101 26-126 16-116 (135)
16 3q2e_A Bromodomain and WD repe 99.9 5.7E-25 1.9E-29 198.2 11.3 102 26-127 13-115 (123)
17 3iu5_A Protein polybromo-1; PB 99.9 4.3E-25 1.5E-29 196.9 9.9 102 25-126 7-114 (116)
18 3mb3_A PH-interacting protein; 99.9 6.8E-25 2.3E-29 200.4 11.3 101 25-125 23-124 (135)
19 3mb4_A Protein polybromo-1; PB 99.9 7E-25 2.4E-29 197.8 11.1 99 27-125 19-123 (124)
20 3p1f_A CREB-binding protein; s 99.9 1.4E-24 4.9E-29 194.2 11.1 98 28-125 16-116 (119)
21 3ljw_A Protein polybromo-1; al 99.9 1.7E-24 5.6E-29 194.4 10.6 98 28-125 13-116 (120)
22 3k2j_A Protein polybromo-1; PB 99.9 1.8E-24 6E-29 197.5 11.0 100 28-127 22-127 (130)
23 3mqm_A Probable histone-lysine 99.9 3.6E-24 1.2E-28 193.5 10.8 99 27-125 13-117 (126)
24 3fkm_X Signaling protein; brom 99.9 4E-24 1.4E-28 202.4 11.6 99 26-124 24-124 (166)
25 2ri7_A Nucleosome-remodeling f 99.9 5E-24 1.7E-28 200.9 9.9 99 26-124 75-173 (174)
26 3uv4_A Second bromodomain of h 99.9 1.1E-23 3.8E-28 198.2 11.7 94 34-127 41-134 (158)
27 3tlp_A Protein polybromo-1; PB 99.9 1.8E-23 6.1E-28 194.1 11.3 103 27-129 28-137 (150)
28 3dai_A ATPase family AAA domai 99.9 7.7E-23 2.6E-27 186.1 12.7 94 28-121 15-112 (130)
29 3o36_A Transcription intermedi 99.9 1.2E-22 4.1E-27 193.7 10.8 97 26-123 84-182 (184)
30 2dkw_A Hypothetical protein KI 99.9 3.7E-22 1.3E-26 182.6 8.9 93 27-124 16-113 (131)
31 3uv5_A Transcription initiatio 99.9 9.1E-22 3.1E-26 197.9 12.0 99 27-125 18-116 (265)
32 2ro1_A Transcription intermedi 99.9 5.3E-22 1.8E-26 191.3 8.7 97 26-127 79-180 (189)
33 3u5n_A E3 ubiquitin-protein li 99.9 1.2E-21 4.1E-26 190.4 11.3 101 25-126 83-203 (207)
34 3uv5_A Transcription initiatio 99.8 2.6E-21 8.9E-26 194.5 11.1 93 34-126 148-240 (265)
35 3aad_A Transcription initiatio 99.8 2.2E-21 7.6E-26 197.9 7.7 99 26-124 50-148 (292)
36 3aad_A Transcription initiatio 99.8 7.8E-21 2.7E-25 193.9 10.3 92 34-125 181-272 (292)
37 2r0y_A Chromatin structure-rem 99.8 1.5E-20 5.1E-25 193.7 9.2 86 38-123 178-263 (311)
38 2r10_A Chromatin structure-rem 99.8 2.2E-20 7.6E-25 195.7 9.8 86 38-123 228-313 (361)
39 2r10_A Chromatin structure-rem 99.7 6.7E-19 2.3E-23 184.5 6.9 97 26-124 81-180 (361)
40 2r0y_A Chromatin structure-rem 99.7 1.2E-18 4.1E-23 179.5 7.1 93 30-124 35-130 (311)
41 3iu6_A Protein polybromo-1; PB 99.6 7.5E-16 2.6E-20 143.9 11.7 95 30-128 14-114 (147)
42 3lqh_A Histone-lysine N-methyl 99.4 4.3E-13 1.5E-17 129.3 7.6 88 29-127 81-168 (183)
43 1dum_A Magainin 2; antibiotic, 47.6 0.9 3.1E-05 30.2 -3.0 17 310-326 5-21 (26)
44 3fke_A Polymerase cofactor VP3 26.7 17 0.00057 32.8 0.6 17 309-325 101-117 (129)
45 3ks4_A Polymerase cofactor VP3 23.2 20 0.00069 33.9 0.5 21 305-325 152-172 (184)
No 1
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.93 E-value=3.9e-26 Score=203.77 Aligned_cols=102 Identities=25% Similarity=0.399 Sum_probs=98.3
Q ss_pred cccchHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCC
Q 007651 24 SWNWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 103 (594)
Q Consensus 24 s~~wc~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS 103 (594)
.+.+|..||..|.+++.+++|.+|||++.+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++
T Consensus 14 ~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s 93 (117)
T 3g0l_A 14 DLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDS 93 (117)
T ss_dssp HHHHHHHHHHHHHTSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCSSS
T ss_pred HHHHHHHHHHHHHhCCCchhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 007651 104 IYFRQARSIHELAKKNFENLRQ 125 (594)
Q Consensus 104 ~i~k~Ak~Le~lfek~~~~L~~ 125 (594)
.++++|..|++.|++.|+++-.
T Consensus 94 ~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 94 DIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999998754
No 2
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.93 E-value=4.3e-26 Score=205.32 Aligned_cols=105 Identities=24% Similarity=0.419 Sum_probs=100.1
Q ss_pred cCCcccchHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcC
Q 007651 21 KGLSWNWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNA 100 (594)
Q Consensus 21 kgLs~~wc~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~ 100 (594)
.+-...+|..||.+|++++.+++|.+|||+..+|||+++|++||||+||++||+++.|.++++|.+||+|||.||+.||+
T Consensus 11 ~~~~~~~~~~il~~l~~~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 90 (121)
T 1e6i_A 11 RGPHDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNG 90 (121)
T ss_dssp CCTTHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHcCCCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 44456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhc
Q 007651 101 PDTIYFRQARSIHELAKKNFENLRQ 125 (594)
Q Consensus 101 pdS~i~k~Ak~Le~lfek~~~~L~~ 125 (594)
+++.++++|..|++.|++.+++++.
T Consensus 91 ~~s~i~~~A~~L~~~f~~~~~~~p~ 115 (121)
T 1e6i_A 91 ENTSYYKYANRLEKFFNNKVKEIPE 115 (121)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHTSGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999998854
No 3
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.93 E-value=7.9e-26 Score=200.56 Aligned_cols=100 Identities=28% Similarity=0.349 Sum_probs=96.0
Q ss_pred cchHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHH
Q 007651 26 NWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIY 105 (594)
Q Consensus 26 ~wc~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i 105 (594)
..|..||.+|++++.+++|.+|||+..+|||+++|++||||+||++||+++.|.++++|.+||+|||.||+.||++++.+
T Consensus 10 ~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~ 89 (112)
T 3d7c_A 10 TTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEY 89 (112)
T ss_dssp HHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHHHcCCCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 007651 106 FRQARSIHELAKKNFENLRQ 125 (594)
Q Consensus 106 ~k~Ak~Le~lfek~~~~L~~ 125 (594)
+++|..|++.|++.++++..
T Consensus 90 ~~~A~~L~~~f~~~~~~~~~ 109 (112)
T 3d7c_A 90 CRCASALEKFFYFKLKEGGL 109 (112)
T ss_dssp HHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999998753
No 4
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.93 E-value=4.6e-26 Score=205.32 Aligned_cols=101 Identities=31% Similarity=0.473 Sum_probs=96.9
Q ss_pred cchHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHH
Q 007651 26 NWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIY 105 (594)
Q Consensus 26 ~wc~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i 105 (594)
..|..||.+|++++.+++|.+|||+..+||||++|++||||+||++||+++.|.++++|.+||+|||.||+.||++++.+
T Consensus 10 ~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~ 89 (121)
T 2d9e_A 10 ILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIF 89 (121)
T ss_dssp HHHHHHHHHHHHHCSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHHHcCCccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcC
Q 007651 106 FRQARSIHELAKKNFENLRQD 126 (594)
Q Consensus 106 ~k~Ak~Le~lfek~~~~L~~d 126 (594)
|++|..|++.|++.+++++..
T Consensus 90 ~~~A~~L~~~~~~~l~~~~~~ 110 (121)
T 2d9e_A 90 YRAAVRLREQGGAVLRQARRQ 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988754
No 5
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.93 E-value=8.2e-26 Score=211.63 Aligned_cols=102 Identities=21% Similarity=0.360 Sum_probs=96.5
Q ss_pred hHHHHHHHHhCCCCCCCcCCCCCC--CCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHH
Q 007651 28 DPQRLYQIKSYCCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIY 105 (594)
Q Consensus 28 c~qIL~kLk~~~~A~~F~ePVD~~--e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i 105 (594)
|..||..|.+++.+++|.+|||+. ++||||+||++||||+||++||+++.|.++++|+.||+|||.||++||.+++.|
T Consensus 37 ~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~i 116 (154)
T 4alg_A 37 HKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDI 116 (154)
T ss_dssp HHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 456789999999999999999998 799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCC
Q 007651 106 FRQARSIHELAKKNFENLRQDSDD 129 (594)
Q Consensus 106 ~k~Ak~Le~lfek~~~~L~~d~e~ 129 (594)
|++|+.|++.|++.|++++.+..+
T Consensus 117 ~~~A~~L~~~f~~~~~~l~~~~~e 140 (154)
T 4alg_A 117 VLMAQTLEKIFLQKVASMPQEEQE 140 (154)
T ss_dssp HHHHHHHHHHHHHHHTTSCSSCCB
T ss_pred HHHHHHHHHHHHHHHHHCCchhcc
Confidence 999999999999999999866443
No 6
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.92 E-value=4.3e-26 Score=204.26 Aligned_cols=103 Identities=28% Similarity=0.484 Sum_probs=96.8
Q ss_pred ccchHHHHHHHHhCCC---CCCCcCCCCCCC--CCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhc
Q 007651 25 WNWDPQRLYQIKSYCC---SSSIDFKMDPEE--LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYN 99 (594)
Q Consensus 25 ~~wc~qIL~kLk~~~~---A~~F~ePVD~~e--~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN 99 (594)
+++|..||.+|.+++. +++|.+|||+.. +||||++|++||||+||++||+++.|.++++|..||+|||.||++||
T Consensus 11 l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 90 (120)
T 3jvl_A 11 LKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYN 90 (120)
T ss_dssp HHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4578899999998887 899999999987 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhcCC
Q 007651 100 APDTIYFRQARSIHELAKKNFENLRQDS 127 (594)
Q Consensus 100 ~pdS~i~k~Ak~Le~lfek~~~~L~~d~ 127 (594)
++++.++++|+.|++.|++.+++++.+.
T Consensus 91 ~~~s~~~~~A~~L~~~f~~~~~~~p~~~ 118 (120)
T 3jvl_A 91 PPDHEVVAMARKLQDVFEMRFAKMPDEP 118 (120)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHTTCCC--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 9999999999999999999999998654
No 7
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.92 E-value=1.6e-25 Score=199.53 Aligned_cols=98 Identities=22% Similarity=0.336 Sum_probs=94.6
Q ss_pred ccchHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCH
Q 007651 25 WNWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI 104 (594)
Q Consensus 25 ~~wc~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~ 104 (594)
+..|..||..|++++.+++|.+|||+..+|||+++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.
T Consensus 18 ~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~ 97 (116)
T 3nxb_A 18 FTAMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGESSE 97 (116)
T ss_dssp HHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhCCCcHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 007651 105 YFRQARSIHELAKKNFEN 122 (594)
Q Consensus 105 i~k~Ak~Le~lfek~~~~ 122 (594)
++++|..|++.|++.|.+
T Consensus 98 ~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 98 YTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999999875
No 8
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.92 E-value=1.8e-25 Score=203.04 Aligned_cols=99 Identities=23% Similarity=0.359 Sum_probs=94.6
Q ss_pred hHHHHHHHHhCCCCCCCcCCCCCC--CCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHH
Q 007651 28 DPQRLYQIKSYCCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIY 105 (594)
Q Consensus 28 c~qIL~kLk~~~~A~~F~ePVD~~--e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i 105 (594)
|..||..|++++.+++|.+|||+. .+||||+||++||||+||++||+++.|.++++|.+||+|||+||++||++++.+
T Consensus 26 ~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i 105 (127)
T 2oss_A 26 LRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDI 105 (127)
T ss_dssp HHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 457899999999999999999986 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcC
Q 007651 106 FRQARSIHELAKKNFENLRQD 126 (594)
Q Consensus 106 ~k~Ak~Le~lfek~~~~L~~d 126 (594)
|++|..|++.|++.+++++.+
T Consensus 106 ~~~A~~L~~~f~~~~~~lp~~ 126 (127)
T 2oss_A 106 VLMAEALEKLFLQKINELPTE 126 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCC
Confidence 999999999999999998754
No 9
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.92 E-value=2.1e-25 Score=201.24 Aligned_cols=100 Identities=24% Similarity=0.415 Sum_probs=95.1
Q ss_pred cchHHHHHHHHhCC------CCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhc
Q 007651 26 NWDPQRLYQIKSYC------CSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYN 99 (594)
Q Consensus 26 ~wc~qIL~kLk~~~------~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN 99 (594)
..|..||..|+++. .+++|.+||+...+||||++|++||||+||++||+++.|.++++|.+||+|||.||++||
T Consensus 16 ~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 95 (123)
T 2dat_A 16 KQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFN 95 (123)
T ss_dssp HHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 45778999999886 589999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhc
Q 007651 100 APDTIYFRQARSIHELAKKNFENLRQ 125 (594)
Q Consensus 100 ~pdS~i~k~Ak~Le~lfek~~~~L~~ 125 (594)
.+++.+|++|..|++.|++.+++++.
T Consensus 96 ~~~s~i~~~A~~L~~~f~~~~~~~ps 121 (123)
T 2dat_A 96 LEGSQIYEDSIVLQSVFKSARQSGPS 121 (123)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999998864
No 10
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.92 E-value=2.7e-25 Score=199.52 Aligned_cols=100 Identities=31% Similarity=0.539 Sum_probs=95.5
Q ss_pred cchHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHH
Q 007651 26 NWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIY 105 (594)
Q Consensus 26 ~wc~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i 105 (594)
..|..||.+|++++.+++|.+|||+..+||||+||++||||+||++||+++.|.++++|.+||+|||.||+.||++++.+
T Consensus 11 ~~l~~il~~L~~~~~~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~s~i 90 (117)
T 2i7k_A 11 EALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIY 90 (117)
T ss_dssp HHHHHHHHHHHTSSGGGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSCSSSSH
T ss_pred HHHHHHHHHHHhCcccHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 007651 106 FRQARSIHELAKKNFENLRQ 125 (594)
Q Consensus 106 ~k~Ak~Le~lfek~~~~L~~ 125 (594)
|++|+.|++.|++.+....-
T Consensus 91 ~~~A~~L~~~f~~~~~~~~~ 110 (117)
T 2i7k_A 91 YKAAKKLLHSGMKILSQERL 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987654
No 11
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.92 E-value=1.5e-25 Score=203.82 Aligned_cols=106 Identities=23% Similarity=0.452 Sum_probs=97.2
Q ss_pred cchHHHHHHHHhCC-------CCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhh
Q 007651 26 NWDPQRLYQIKSYC-------CSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQY 98 (594)
Q Consensus 26 ~wc~qIL~kLk~~~-------~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~Y 98 (594)
..|..||..|.++. .+++|.+||+...+||||+||++||||+||++||+++.|.++++|.+||+|||.||+.|
T Consensus 14 ~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~y 93 (129)
T 2grc_A 14 KKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTF 93 (129)
T ss_dssp HHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45778999999875 48999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007651 99 NAPDTIYFRQARSIHELAKKNFENLRQDSDDNE 131 (594)
Q Consensus 99 N~pdS~i~k~Ak~Le~lfek~~~~L~~d~e~~E 131 (594)
|++++.+|++|..|++.|++.++++..+.+.++
T Consensus 94 N~~~s~i~~~A~~L~~~f~~~~~~l~~~~~~~~ 126 (129)
T 2grc_A 94 NLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEG 126 (129)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccCCCcccc
Confidence 999999999999999999999999987655443
No 12
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.92 E-value=1.4e-25 Score=204.53 Aligned_cols=101 Identities=29% Similarity=0.477 Sum_probs=95.5
Q ss_pred ccchHHHHHHHHhCCC---CCCCcCCCCCC--CCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhc
Q 007651 25 WNWDPQRLYQIKSYCC---SSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYN 99 (594)
Q Consensus 25 ~~wc~qIL~kLk~~~~---A~~F~ePVD~~--e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN 99 (594)
+.+|..||.+|.+++. +++|.+|||+. .+||||+||++||||+||++||+++.|.++++|..||+|||.||++||
T Consensus 24 l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN 103 (130)
T 2ouo_A 24 LKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYN 103 (130)
T ss_dssp HHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHc
Confidence 4578999999998764 89999999987 499999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhc
Q 007651 100 APDTIYFRQARSIHELAKKNFENLRQ 125 (594)
Q Consensus 100 ~pdS~i~k~Ak~Le~lfek~~~~L~~ 125 (594)
++++.+|++|..|++.|++.|.+++.
T Consensus 104 ~~~s~i~~~A~~L~~~f~~~~~~lp~ 129 (130)
T 2ouo_A 104 PPDHEVVAMARKLQDVFEMRFAKMPD 129 (130)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999874
No 13
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.92 E-value=5.1e-25 Score=201.91 Aligned_cols=104 Identities=22% Similarity=0.345 Sum_probs=98.1
Q ss_pred cccchHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhC--CCCCCHHHHHHHHHHHHHHhhhhcCC
Q 007651 24 SWNWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLAN--GAYATLEQFEKDVFLICSNAMQYNAP 101 (594)
Q Consensus 24 s~~wc~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~--g~Y~SieEF~~DVrLIf~NA~~YN~p 101 (594)
...+|..||.+|++++.+++|.+||+. .+||||++|++||||+||++||++ +.|.++++|.+||+|||.||++||.+
T Consensus 21 ~~~~c~~il~~L~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~ 99 (135)
T 2yyn_A 21 DKRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEP 99 (135)
T ss_dssp HHHHHHHHHHHHHTSGGGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHhCccchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 346789999999999999999999998 799999999999999999999998 59999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhcCCC
Q 007651 102 DTIYFRQARSIHELAKKNFENLRQDSD 128 (594)
Q Consensus 102 dS~i~k~Ak~Le~lfek~~~~L~~d~e 128 (594)
++.+|++|..|++.|++.++++..+..
T Consensus 100 ~s~i~~~A~~L~~~f~~~~~~~~~~~~ 126 (135)
T 2yyn_A 100 DSEVANAGIKLENYFEELLKNLYPEKR 126 (135)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccccC
Confidence 999999999999999999999976544
No 14
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.92 E-value=5.8e-25 Score=198.45 Aligned_cols=99 Identities=32% Similarity=0.578 Sum_probs=94.4
Q ss_pred cchHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHH
Q 007651 26 NWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIY 105 (594)
Q Consensus 26 ~wc~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i 105 (594)
..|..||..|++++.+++|.+|||+..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.+
T Consensus 16 ~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~ 95 (123)
T 3hme_A 16 QLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVY 95 (123)
T ss_dssp HHHHHHHHHHHTTCTTCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHHHhCCccHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 007651 106 FRQARSIHELAKKNFENLR 124 (594)
Q Consensus 106 ~k~Ak~Le~lfek~~~~L~ 124 (594)
|++|..|++.|++.+.+.+
T Consensus 96 ~~~A~~L~~~~~~~~~~~~ 114 (123)
T 3hme_A 96 YKLAKKILHAGFKMMSKER 114 (123)
T ss_dssp HHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887543
No 15
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.92 E-value=8.6e-25 Score=199.72 Aligned_cols=101 Identities=32% Similarity=0.517 Sum_probs=96.6
Q ss_pred cchHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHH
Q 007651 26 NWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIY 105 (594)
Q Consensus 26 ~wc~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i 105 (594)
..|..||..|++++.+++|.+|||+..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.+
T Consensus 16 ~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~ 95 (135)
T 3rcw_A 16 VLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVF 95 (135)
T ss_dssp HHHHHHHHHHHHTCTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHHHhCCcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcC
Q 007651 106 FRQARSIHELAKKNFENLRQD 126 (594)
Q Consensus 106 ~k~Ak~Le~lfek~~~~L~~d 126 (594)
|++|..|++.|++.+++++.+
T Consensus 96 ~~~A~~L~~~~~~~~~~~~~~ 116 (135)
T 3rcw_A 96 YRAAVRLRDQGGVVLRQARRE 116 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987654
No 16
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.92 E-value=5.7e-25 Score=198.18 Aligned_cols=102 Identities=29% Similarity=0.425 Sum_probs=97.2
Q ss_pred cchHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCC-CCH
Q 007651 26 NWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP-DTI 104 (594)
Q Consensus 26 ~wc~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~p-dS~ 104 (594)
..|.+||..|.+++.+++|.+|||+..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++ ++.
T Consensus 13 ~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~~s~ 92 (123)
T 3q2e_A 13 KQCKELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPNKRSK 92 (123)
T ss_dssp HHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTTSH
T ss_pred HHHHHHHHHHHhCCCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCCH
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999999996 899
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCC
Q 007651 105 YFRQARSIHELAKKNFENLRQDS 127 (594)
Q Consensus 105 i~k~Ak~Le~lfek~~~~L~~d~ 127 (594)
+|++|..|++.|++.++++..+.
T Consensus 93 i~~~A~~L~~~f~~~~~~~~~~~ 115 (123)
T 3q2e_A 93 IYSMTLRLSALFEEKMKKISSDF 115 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887543
No 17
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.92 E-value=4.3e-25 Score=196.95 Aligned_cols=102 Identities=22% Similarity=0.322 Sum_probs=96.3
Q ss_pred ccchHHHHHHHHhCC------CCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhh
Q 007651 25 WNWDPQRLYQIKSYC------CSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQY 98 (594)
Q Consensus 25 ~~wc~qIL~kLk~~~------~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~Y 98 (594)
+..|.+||..|+++. .+++|.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.|
T Consensus 7 ~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 86 (116)
T 3iu5_A 7 IAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSY 86 (116)
T ss_dssp HHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 456889999999885 49999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhhhcC
Q 007651 99 NAPDTIYFRQARSIHELAKKNFENLRQD 126 (594)
Q Consensus 99 N~pdS~i~k~Ak~Le~lfek~~~~L~~d 126 (594)
|++++.+|++|..|++.|++.++++.+.
T Consensus 87 N~~~s~~~~~A~~L~~~f~~~~~~l~~~ 114 (116)
T 3iu5_A 87 YKPDSPEYKAACKLWDLYLRTRNEFVQK 114 (116)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998653
No 18
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.91 E-value=6.8e-25 Score=200.36 Aligned_cols=101 Identities=27% Similarity=0.366 Sum_probs=96.5
Q ss_pred ccchHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCC-CC
Q 007651 25 WNWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP-DT 103 (594)
Q Consensus 25 ~~wc~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~p-dS 103 (594)
...|..||..|.+++.+++|.+|||+..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++ ++
T Consensus 23 ~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~~s 102 (135)
T 3mb3_A 23 KKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPSKRS 102 (135)
T ss_dssp HHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTTC
T ss_pred HHHHHHHHHHHHhCCCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 007651 104 IYFRQARSIHELAKKNFENLRQ 125 (594)
Q Consensus 104 ~i~k~Ak~Le~lfek~~~~L~~ 125 (594)
.+|++|..|++.|++.++++..
T Consensus 103 ~i~~~A~~L~~~f~~~~~~~~~ 124 (135)
T 3mb3_A 103 RIYSMSLRLSAFFEEHISSVLS 124 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 19
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.91 E-value=7e-25 Score=197.84 Aligned_cols=99 Identities=22% Similarity=0.391 Sum_probs=93.3
Q ss_pred chHHHHHHHHh------CCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcC
Q 007651 27 WDPQRLYQIKS------YCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNA 100 (594)
Q Consensus 27 wc~qIL~kLk~------~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~ 100 (594)
.|.+||..|++ +..+++|.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||+
T Consensus 19 ~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 98 (124)
T 3mb4_A 19 KLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNE 98 (124)
T ss_dssp HHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45688899988 455799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhc
Q 007651 101 PDTIYFRQARSIHELAKKNFENLRQ 125 (594)
Q Consensus 101 pdS~i~k~Ak~Le~lfek~~~~L~~ 125 (594)
+++.+|++|..|++.|++.++++..
T Consensus 99 ~~s~i~~~A~~L~~~f~~~~~~l~~ 123 (124)
T 3mb4_A 99 PESLIYKDALVLHKVLLETRRDLEG 123 (124)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998864
No 20
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.91 E-value=1.4e-24 Score=194.17 Aligned_cols=98 Identities=26% Similarity=0.447 Sum_probs=91.9
Q ss_pred hHHHHHHHHh-CCCCCCCcCCCCCC--CCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCH
Q 007651 28 DPQRLYQIKS-YCCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI 104 (594)
Q Consensus 28 c~qIL~kLk~-~~~A~~F~ePVD~~--e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~ 104 (594)
|..+|.+|.+ ++.+++|.+|||+. ++||||++|++||||+||++||+++.|.++++|..||+|||+||+.||++++.
T Consensus 16 l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~ 95 (119)
T 3p1f_A 16 LMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSR 95 (119)
T ss_dssp HHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 4577888877 66899999999998 79999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 007651 105 YFRQARSIHELAKKNFENLRQ 125 (594)
Q Consensus 105 i~k~Ak~Le~lfek~~~~L~~ 125 (594)
+|++|..|++.|++.++++.+
T Consensus 96 i~~~A~~L~~~f~~~~~~~~~ 116 (119)
T 3p1f_A 96 VYKFCSKLAEVFEQEIDPVMQ 116 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988753
No 21
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.91 E-value=1.7e-24 Score=194.40 Aligned_cols=98 Identities=27% Similarity=0.428 Sum_probs=93.0
Q ss_pred hHHHHHHHHhCCC------CCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCC
Q 007651 28 DPQRLYQIKSYCC------SSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 101 (594)
Q Consensus 28 c~qIL~kLk~~~~------A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~p 101 (594)
|.++|..|.++.. +++|.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++
T Consensus 13 ~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 92 (120)
T 3ljw_A 13 LEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEP 92 (120)
T ss_dssp HHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4577888888777 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhc
Q 007651 102 DTIYFRQARSIHELAKKNFENLRQ 125 (594)
Q Consensus 102 dS~i~k~Ak~Le~lfek~~~~L~~ 125 (594)
++.+|++|..|++.|++.++++..
T Consensus 93 ~s~~~~~A~~L~~~f~~~~~~i~~ 116 (120)
T 3ljw_A 93 GSQVFKDANSIKKIFYMKKAEIEH 116 (120)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999998864
No 22
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.91 E-value=1.8e-24 Score=197.47 Aligned_cols=100 Identities=23% Similarity=0.428 Sum_probs=93.0
Q ss_pred hHHHHHHHHhCCC------CCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCC
Q 007651 28 DPQRLYQIKSYCC------SSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 101 (594)
Q Consensus 28 c~qIL~kLk~~~~------A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~p 101 (594)
|.+++..|.+..+ +++|.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++
T Consensus 22 ~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~ 101 (130)
T 3k2j_A 22 SMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVP 101 (130)
T ss_dssp HHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 3466777776654 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhcCC
Q 007651 102 DTIYFRQARSIHELAKKNFENLRQDS 127 (594)
Q Consensus 102 dS~i~k~Ak~Le~lfek~~~~L~~d~ 127 (594)
++.+|++|..|++.|++.++++....
T Consensus 102 ~s~i~~~A~~L~~~f~~~~~~l~~~~ 127 (130)
T 3k2j_A 102 NSAIYKRVLKLQQVMQAKKKELARRD 127 (130)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999987654
No 23
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.90 E-value=3.6e-24 Score=193.46 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=92.4
Q ss_pred chHHHHHHHHhCCC------CCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcC
Q 007651 27 WDPQRLYQIKSYCC------SSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNA 100 (594)
Q Consensus 27 wc~qIL~kLk~~~~------A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~ 100 (594)
.|..|+..|+++.+ +++|.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||+
T Consensus 13 ~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 92 (126)
T 3mqm_A 13 IFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKYYG 92 (126)
T ss_dssp HHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 35577888887754 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhc
Q 007651 101 PDTIYFRQARSIHELAKKNFENLRQ 125 (594)
Q Consensus 101 pdS~i~k~Ak~Le~lfek~~~~L~~ 125 (594)
+++.+|++|..|++.|++.++++..
T Consensus 93 ~~s~~~~~A~~L~~~f~~~~~~~~~ 117 (126)
T 3mqm_A 93 RKSPVGRDVCRLRKAYYNARHEASA 117 (126)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987653
No 24
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.90 E-value=4e-24 Score=202.38 Aligned_cols=99 Identities=26% Similarity=0.444 Sum_probs=92.2
Q ss_pred cchHHHHHHHHhCCCCCCCcCCCCCC--CCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCC
Q 007651 26 NWDPQRLYQIKSYCCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 103 (594)
Q Consensus 26 ~wc~qIL~kLk~~~~A~~F~ePVD~~--e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS 103 (594)
..|..||..|++++.+++|.+|||+. .+||||+||++||||+||++||+++.|.++++|..||+|||.||++||++++
T Consensus 24 ~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s 103 (166)
T 3fkm_X 24 LLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLYNTSNS 103 (166)
T ss_dssp HHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred HHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 34678999999999999999999986 6999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 007651 104 IYFRQARSIHELAKKNFENLR 124 (594)
Q Consensus 104 ~i~k~Ak~Le~lfek~~~~L~ 124 (594)
.|+++|+.|++.|++.|.++.
T Consensus 104 ~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 104 VVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999998764
No 25
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.90 E-value=5e-24 Score=200.90 Aligned_cols=99 Identities=22% Similarity=0.399 Sum_probs=95.1
Q ss_pred cchHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHH
Q 007651 26 NWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIY 105 (594)
Q Consensus 26 ~wc~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i 105 (594)
..+..||..|.+++.+++|.+|||+..+|+|+++|++||||+||++||+++.|.++++|.+||+|||+||++||++++.+
T Consensus 75 ~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~ 154 (174)
T 2ri7_A 75 EGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPF 154 (174)
T ss_dssp HHHHHHHHHHHTSGGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHHHhhhhhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 35668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 007651 106 FRQARSIHELAKKNFENLR 124 (594)
Q Consensus 106 ~k~Ak~Le~lfek~~~~L~ 124 (594)
|++|+.|++.|++.+++++
T Consensus 155 ~~~A~~L~~~f~~~~~~~~ 173 (174)
T 2ri7_A 155 YQCAEVLESFFVQKLKGFK 173 (174)
T ss_dssp HHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998775
No 26
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.90 E-value=1.1e-23 Score=198.16 Aligned_cols=94 Identities=27% Similarity=0.486 Sum_probs=89.3
Q ss_pred HHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHH
Q 007651 34 QIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIH 113 (594)
Q Consensus 34 kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~k~Ak~Le 113 (594)
+|+.++.+++|.+|||+..+||||+||++||||+||++||+++.|.++++|..||+|||.||++||++++.+|++|..|+
T Consensus 41 kl~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~ 120 (158)
T 3uv4_A 41 KMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIV 120 (158)
T ss_dssp TTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 36778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCC
Q 007651 114 ELAKKNFENLRQDS 127 (594)
Q Consensus 114 ~lfek~~~~L~~d~ 127 (594)
+.|++.++++....
T Consensus 121 ~~~~~~l~e~~~~l 134 (158)
T 3uv4_A 121 NVCYQTLTEYDEHL 134 (158)
T ss_dssp HHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998876543
No 27
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.89 E-value=1.8e-23 Score=194.11 Aligned_cols=103 Identities=23% Similarity=0.321 Sum_probs=93.2
Q ss_pred chHHHHHHHHhCCC-------CCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhc
Q 007651 27 WDPQRLYQIKSYCC-------SSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYN 99 (594)
Q Consensus 27 wc~qIL~kLk~~~~-------A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN 99 (594)
.|..+|..|.++.. +.+|..||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||
T Consensus 28 ~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 107 (150)
T 3tlp_A 28 RMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYN 107 (150)
T ss_dssp HHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 45577777776654 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 007651 100 APDTIYFRQARSIHELAKKNFENLRQDSDD 129 (594)
Q Consensus 100 ~pdS~i~k~Ak~Le~lfek~~~~L~~d~e~ 129 (594)
++++.+|++|..|++.|++.++++....++
T Consensus 108 ~~~s~i~~~A~~L~~~f~~~~~~l~~~pd~ 137 (150)
T 3tlp_A 108 EEGSQVYNDAHILEKLLKEKRKELGPLPDD 137 (150)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHccCCCCh
Confidence 999999999999999999999998755443
No 28
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.89 E-value=7.7e-23 Score=186.06 Aligned_cols=94 Identities=28% Similarity=0.409 Sum_probs=88.3
Q ss_pred hHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHH--
Q 007651 28 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIY-- 105 (594)
Q Consensus 28 c~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i-- 105 (594)
|..+|..|..++.+++|.+|||+..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.+
T Consensus 15 l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~ 94 (130)
T 3dai_A 15 LRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDRDPGDR 94 (130)
T ss_dssp HHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHCCSSSHHHH
T ss_pred HHHHHHHHHcCCccHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCChhHH
Confidence 456789999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred --HHHHHHHHHHHHHHHH
Q 007651 106 --FRQARSIHELAKKNFE 121 (594)
Q Consensus 106 --~k~Ak~Le~lfek~~~ 121 (594)
+..|..|++.+...++
T Consensus 95 ~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 95 LIRHRACALRDTAYAIIK 112 (130)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 7888999999888885
No 29
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.88 E-value=1.2e-22 Score=193.74 Aligned_cols=97 Identities=24% Similarity=0.378 Sum_probs=92.3
Q ss_pred cchHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhC--CCCCCHHHHHHHHHHHHHHhhhhcCCCC
Q 007651 26 NWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLAN--GAYATLEQFEKDVFLICSNAMQYNAPDT 103 (594)
Q Consensus 26 ~wc~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~--g~Y~SieEF~~DVrLIf~NA~~YN~pdS 103 (594)
..|..||..|.+++.+++|.+||+.. +|+||+||++||||+||++||++ +.|.++++|.+||+|||.||++||++++
T Consensus 84 ~~c~~il~~l~~~~~s~~F~~Pv~~~-~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s 162 (184)
T 3o36_A 84 RKCERLLLFLYCHEMSLAFQDPVPLT-VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDS 162 (184)
T ss_dssp HHHHHHHHHHHHSTTCHHHHSCCCTT-STTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHhchhhhhhccccccC-CCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 34678999999999999999999964 89999999999999999999998 7999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 007651 104 IYFRQARSIHELAKKNFENL 123 (594)
Q Consensus 104 ~i~k~Ak~Le~lfek~~~~L 123 (594)
.++++|+.|++.|++.++++
T Consensus 163 ~v~~~a~~L~~~f~~~~~~~ 182 (184)
T 3o36_A 163 EVANAGIKLENYFEELLKNL 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999876
No 30
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=3.7e-22 Score=182.61 Aligned_cols=93 Identities=29% Similarity=0.401 Sum_probs=85.6
Q ss_pred chHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCH--
Q 007651 27 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI-- 104 (594)
Q Consensus 27 wc~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~-- 104 (594)
+|..||..|..++.+++|.+| +||||+||++||||+||++||+++.|.++++|..||+|||.||+.||++++.
T Consensus 16 ~~~~il~~l~~~~~~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~~~ 90 (131)
T 2dkw_A 16 FLRDVTKRLATDKRFNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPDKDPGD 90 (131)
T ss_dssp HHHHHHHHHHHSGGGCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHSCCCSSTTH
T ss_pred HHHHHHHHHHhCccchhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCChhH
Confidence 466788999999999999998 8999999999999999999999999999999999999999999999999984
Q ss_pred --HHHHHHHHHHHHHHHHH-hhh
Q 007651 105 --YFRQARSIHELAKKNFE-NLR 124 (594)
Q Consensus 105 --i~k~Ak~Le~lfek~~~-~L~ 124 (594)
++.+|..|++.|...+. ++.
T Consensus 91 ~~i~~~A~~L~~~~~~~l~~~l~ 113 (131)
T 2dkw_A 91 KIIRHRACTLKDTAHAIIAAELD 113 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999988884 443
No 31
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.86 E-value=9.1e-22 Score=197.88 Aligned_cols=99 Identities=19% Similarity=0.380 Sum_probs=95.2
Q ss_pred chHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHH
Q 007651 27 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF 106 (594)
Q Consensus 27 wc~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~ 106 (594)
.|..||..|++++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|..||+|||+||+.||++++.++
T Consensus 18 ~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~ 97 (265)
T 3uv5_A 18 ILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLT 97 (265)
T ss_dssp HHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHcCCCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCCCCChHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 007651 107 RQARSIHELAKKNFENLRQ 125 (594)
Q Consensus 107 k~Ak~Le~lfek~~~~L~~ 125 (594)
++|+.|++.|++.++++..
T Consensus 98 ~~A~~l~~~~~~~~~~~~~ 116 (265)
T 3uv5_A 98 QISQSMLDLCDEKLKEKED 116 (265)
T ss_dssp HHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999987753
No 32
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.85 E-value=5.3e-22 Score=191.32 Aligned_cols=97 Identities=10% Similarity=0.116 Sum_probs=91.1
Q ss_pred cchHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccC--CccCHHHHHHHHhCC---CCCCHHHHHHHHHHHHHHhhhhcC
Q 007651 26 NWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIE--HPMDFGTVRNKLANG---AYATLEQFEKDVFLICSNAMQYNA 100 (594)
Q Consensus 26 ~wc~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK--~PMDLsTIkkKL~~g---~Y~SieEF~~DVrLIf~NA~~YN~ 100 (594)
.+|..||.+|+.++.+++|.+||+ |+||+||+ +||||+||++||+++ .|.++++|++||+|||+||++||
T Consensus 79 ~~c~~iL~~l~~~~~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~~~yN- 153 (189)
T 2ro1_A 79 RKCERVLLALFCHEPCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLT- 153 (189)
T ss_dssp HHHHHHHHHHHHSTTHHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhcccCccchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHC-
Confidence 467899999999999999999998 68999998 899999999999999 99999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhcCC
Q 007651 101 PDTIYFRQARSIHELAKKNFENLRQDS 127 (594)
Q Consensus 101 pdS~i~k~Ak~Le~lfek~~~~L~~d~ 127 (594)
+++.++++|+.|++.|++.|+++..+.
T Consensus 154 ~~s~~~~~a~~L~~~Fe~~~~~~~~~~ 180 (189)
T 2ro1_A 154 EDKADVQSIIGLQRFFETRMNEAFGDT 180 (189)
T ss_dssp CSSCSSHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 588889999999999999999997654
No 33
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.85 E-value=1.2e-21 Score=190.37 Aligned_cols=101 Identities=22% Similarity=0.339 Sum_probs=95.4
Q ss_pred ccchHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhC---CCCCCHHHHHHHHHHHHHHhhhhcC-
Q 007651 25 WNWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLAN---GAYATLEQFEKDVFLICSNAMQYNA- 100 (594)
Q Consensus 25 ~~wc~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~---g~Y~SieEF~~DVrLIf~NA~~YN~- 100 (594)
...|.+||..|.+++.+++|.+||+. .+|+||+||++||||+||++||++ +.|.++++|..||+|||+||++||.
T Consensus 83 ~~~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 161 (207)
T 3u5n_A 83 QRKCERLLLYLYCHELSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEM 161 (207)
T ss_dssp HHHHHHHHHHHHTSTTCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHHHHHCCC
Confidence 34577999999999999999999987 799999999999999999999997 7999999999999999999999999
Q ss_pred ----------------CCCHHHHHHHHHHHHHHHHHHhhhcC
Q 007651 101 ----------------PDTIYFRQARSIHELAKKNFENLRQD 126 (594)
Q Consensus 101 ----------------pdS~i~k~Ak~Le~lfek~~~~L~~d 126 (594)
+++.++++|++|+..|++.++++..+
T Consensus 162 ~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~ 203 (207)
T 3u5n_A 162 MKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSD 203 (207)
T ss_dssp HHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred cchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999998654
No 34
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.84 E-value=2.6e-21 Score=194.55 Aligned_cols=93 Identities=27% Similarity=0.498 Sum_probs=88.9
Q ss_pred HHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHH
Q 007651 34 QIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIH 113 (594)
Q Consensus 34 kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~k~Ak~Le 113 (594)
+++.++.+++|.+|||...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.+|++|..|+
T Consensus 148 ~l~~~~~~~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~s~~~~~A~~l~ 227 (265)
T 3uv5_A 148 KMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIV 227 (265)
T ss_dssp TTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred HHHhhhhhHHHhCCCChhHhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcC
Q 007651 114 ELAKKNFENLRQD 126 (594)
Q Consensus 114 ~lfek~~~~L~~d 126 (594)
..|++.++++.+.
T Consensus 228 ~~~~~~~~~~~~~ 240 (265)
T 3uv5_A 228 NVCYQTLTEYDEH 240 (265)
T ss_dssp HHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887644
No 35
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.83 E-value=2.2e-21 Score=197.93 Aligned_cols=99 Identities=19% Similarity=0.380 Sum_probs=94.3
Q ss_pred cchHHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHH
Q 007651 26 NWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIY 105 (594)
Q Consensus 26 ~wc~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i 105 (594)
..|..||.+|++++.+++|.+|||+..+||||+||++||||+||++||+++.|.++++|..||+|||+||+.||++++.+
T Consensus 50 ~~~~~il~~l~~~~~a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i 129 (292)
T 3aad_A 50 SILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSL 129 (292)
T ss_dssp HHHHHHHHHHSSSTTCGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCSSSHH
T ss_pred HHHHHHHHHHHhCCcchhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 35779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 007651 106 FRQARSIHELAKKNFENLR 124 (594)
Q Consensus 106 ~k~Ak~Le~lfek~~~~L~ 124 (594)
+++|..|++.|++.++++.
T Consensus 130 ~~~A~~L~~~~~~~~~~~~ 148 (292)
T 3aad_A 130 TQISQSMLDLCDEKLKEKE 148 (292)
T ss_dssp HHHHTHHHHTTTTTGGGSH
T ss_pred HHHHHHHHHHHHhhhhcch
Confidence 9999999999988887653
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.83 E-value=7.8e-21 Score=193.91 Aligned_cols=92 Identities=27% Similarity=0.502 Sum_probs=88.5
Q ss_pred HHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHH
Q 007651 34 QIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIH 113 (594)
Q Consensus 34 kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~k~Ak~Le 113 (594)
+|++++.+++|.+|||...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.+|++|..|+
T Consensus 181 ~l~~~~~s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~L~ 260 (292)
T 3aad_A 181 KMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIV 260 (292)
T ss_dssp TGGGSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHH
T ss_pred hhhcCcchhHHHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhc
Q 007651 114 ELAKKNFENLRQ 125 (594)
Q Consensus 114 ~lfek~~~~L~~ 125 (594)
+.|++.++++..
T Consensus 261 ~~~~~~~~~~~~ 272 (292)
T 3aad_A 261 NVCYQTLTEYDE 272 (292)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 37
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.82 E-value=1.5e-20 Score=193.72 Aligned_cols=86 Identities=24% Similarity=0.469 Sum_probs=83.3
Q ss_pred CCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHH
Q 007651 38 YCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAK 117 (594)
Q Consensus 38 ~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~k~Ak~Le~lfe 117 (594)
+..+++|++|||+..+||||+||++||||+||++||+++.|.++++|.+||+|||.||++||.+++.+|++|..|++.|+
T Consensus 178 ~~~s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~ 257 (311)
T 2r0y_A 178 VKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFN 257 (311)
T ss_dssp SCTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CccHHHHhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 007651 118 KNFENL 123 (594)
Q Consensus 118 k~~~~L 123 (594)
+.+++.
T Consensus 258 ~~~~~~ 263 (311)
T 2r0y_A 258 YLIQKE 263 (311)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999873
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.81 E-value=2.2e-20 Score=195.67 Aligned_cols=86 Identities=24% Similarity=0.469 Sum_probs=83.4
Q ss_pred CCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHH
Q 007651 38 YCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAK 117 (594)
Q Consensus 38 ~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~k~Ak~Le~lfe 117 (594)
+..+++|++|||...+||||+||++||||+||++||+++.|.++++|+.||+|||.||+.||.+++.||++|..|++.|+
T Consensus 228 ~~~s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~ 307 (361)
T 2r10_A 228 VKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFN 307 (361)
T ss_dssp SCTTGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CcchhcccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 007651 118 KNFENL 123 (594)
Q Consensus 118 k~~~~L 123 (594)
+.+++.
T Consensus 308 ~~~~~~ 313 (361)
T 2r10_A 308 YLIQKE 313 (361)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999873
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.75 E-value=6.7e-19 Score=184.49 Aligned_cols=97 Identities=16% Similarity=0.172 Sum_probs=86.3
Q ss_pred cchHHHHHHHHhC--CCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCC-CHHHHHHHHHHHHHHhhhhcCCC
Q 007651 26 NWDPQRLYQIKSY--CCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYA-TLEQFEKDVFLICSNAMQYNAPD 102 (594)
Q Consensus 26 ~wc~qIL~kLk~~--~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~-SieEF~~DVrLIf~NA~~YN~pd 102 (594)
.+|..+|..+.+. ..+++|++||+...+||||+||++||||+||++|| +.|. ++++|+.||+|||+||+.||.++
T Consensus 81 ~~~~~~l~~l~~~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~yN~~~ 158 (361)
T 2r10_A 81 RFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEYD 158 (361)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHHBCSS
T ss_pred HHHHHHHHHHHHcCCcccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhcCCCC
Confidence 4566777777543 34799999999999999999999999999999998 4555 89999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhh
Q 007651 103 TIYFRQARSIHELAKKNFENLR 124 (594)
Q Consensus 103 S~i~k~Ak~Le~lfek~~~~L~ 124 (594)
+.||++|..|+++|++.|.+.+
T Consensus 159 s~i~~~a~~l~~~~~~~~~k~k 180 (361)
T 2r10_A 159 SLIVKNSMQVVMLIEFEVLKAK 180 (361)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999888653
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.74 E-value=1.2e-18 Score=179.53 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=82.5
Q ss_pred HHHHHHHhC--CCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCC-CHHHHHHHHHHHHHHhhhhcCCCCHHH
Q 007651 30 QRLYQIKSY--CCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYA-TLEQFEKDVFLICSNAMQYNAPDTIYF 106 (594)
Q Consensus 30 qIL~kLk~~--~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~-SieEF~~DVrLIf~NA~~YN~pdS~i~ 106 (594)
.+|+.+.+. ..+++|++||+...+||||+||++||||+||++|| ..|. ++++|..||+|||+||++||.+++.||
T Consensus 35 ~~L~~~~~~~r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~yN~~~s~i~ 112 (311)
T 2r0y_A 35 FTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEYDSLIV 112 (311)
T ss_dssp HHHHHHHHHSHHHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHHHSCTTSHHH
T ss_pred HHHHHHHHcCCchhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHHHccCCCCHHH
Confidence 445544442 35899999999999999999999999999999998 5555 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 007651 107 RQARSIHELAKKNFENLR 124 (594)
Q Consensus 107 k~Ak~Le~lfek~~~~L~ 124 (594)
++|+.|+++|++.|.+.+
T Consensus 113 ~~A~~l~~~~~~~~~k~k 130 (311)
T 2r0y_A 113 KNSMQVVMLIEFEVLKAK 130 (311)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 999999999999988763
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.64 E-value=7.5e-16 Score=143.89 Aligned_cols=95 Identities=19% Similarity=0.345 Sum_probs=85.1
Q ss_pred HHHHHHHhCCC------CCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCC
Q 007651 30 QRLYQIKSYCC------SSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 103 (594)
Q Consensus 30 qIL~kLk~~~~------A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS 103 (594)
.++..+.++.+ +.+|++.++.. |+||. ++||+|.+|++||+++.|+++++|..||.|||.||++||.++|
T Consensus 14 ~l~~~v~~~~De~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~NAr~yN~e~S 89 (147)
T 3iu6_A 14 NLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERARRMNRTDS 89 (147)
T ss_dssp HHHHHHHTCBCTTSCBGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHhhcCCCCCcchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 44566666543 78899998877 89998 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCC
Q 007651 104 IYFRQARSIHELAKKNFENLRQDSD 128 (594)
Q Consensus 104 ~i~k~Ak~Le~lfek~~~~L~~d~e 128 (594)
.||.+|..|+..|.+.+.++-.+.+
T Consensus 90 ~IyeDAv~Lq~~f~~~r~eL~~~g~ 114 (147)
T 3iu6_A 90 EIYEDAVELQQFFIKIRDELCKNGE 114 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999876543
No 42
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.38 E-value=4.3e-13 Score=129.30 Aligned_cols=88 Identities=16% Similarity=0.217 Sum_probs=78.9
Q ss_pred HHHHHHHHhCCCCCCCcCCCCCCCCCCcccccCCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhcCCCCHHHHH
Q 007651 29 PQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 108 (594)
Q Consensus 29 ~qIL~kLk~~~~A~~F~ePVD~~e~PDY~dIIK~PMDLsTIkkKL~~g~Y~SieEF~~DVrLIf~NA~~YN~pdS~i~k~ 108 (594)
.+||..|..++.+++|++. .++.||||.||++||+.+.|.++++|..||.|||+||..||.+++++.++
T Consensus 81 ~~vl~~L~~~~~s~~~~~y-----------~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~~~~e~~~a 149 (183)
T 3lqh_A 81 KQVLTALLNSRTTSHLLRY-----------RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQPEIKKA 149 (183)
T ss_dssp HHHHHHHHTCHHHHHHHTC-----------CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhccccHhhhhh-----------hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCChhhhhh
Confidence 3788899999999999873 25999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCC
Q 007651 109 ARSIHELAKKNFENLRQDS 127 (594)
Q Consensus 109 Ak~Le~lfek~~~~L~~d~ 127 (594)
+..|+.+|++.++++-.-.
T Consensus 150 g~~l~~~f~~~l~~vfpwf 168 (183)
T 3lqh_A 150 NSMVKSFFIRQMERVFPWF 168 (183)
T ss_dssp HHHHHHHHHHHHHHHCTTS
T ss_pred hhHHHHHHHHHHHHHCCCC
Confidence 9999999999999886543
No 43
>1dum_A Magainin 2; antibiotic, dimer, amphipathic helix, membrane, vesicle, bilayer, antimicrobial protein; NMR {Synthetic} SCOP: j.4.1.1 PDB: 2mag_A
Probab=47.60 E-value=0.9 Score=30.24 Aligned_cols=17 Identities=35% Similarity=0.601 Sum_probs=12.3
Q ss_pred hCCCCCccCCcccccCC
Q 007651 310 CLPAGVRFGPGWVVEND 326 (594)
Q Consensus 310 ~Lp~g~~FG~GWVge~e 326 (594)
-|-.--|||..||||-.
T Consensus 5 ylhsakkfgkawvgeim 21 (26)
T 1dum_A 5 YLHSAKKFGKAWVGEIM 21 (26)
T ss_dssp TTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHH
Confidence 34445689999999853
No 44
>3fke_A Polymerase cofactor VP35; RNA binding domain, coiled coil, interferon antiviral system evasion, RNA replication, RNA-binding; 1.40A {Zaire ebolavirus - mayinga} PDB: 3l25_A 3l26_A 3l28_A 3l27_A 3l29_A 3l2a_A
Probab=26.72 E-value=17 Score=32.82 Aligned_cols=17 Identities=29% Similarity=0.628 Sum_probs=14.9
Q ss_pred hhCCCCCccCCcccccC
Q 007651 309 RCLPAGVRFGPGWVVEN 325 (594)
Q Consensus 309 ~~Lp~g~~FG~GWVge~ 325 (594)
|.+|||-|.|+|||--|
T Consensus 101 R~vPp~Pki~rGWVciy 117 (129)
T 3fke_A 101 RPVPPSPKIDRGWVCVF 117 (129)
T ss_dssp ECCCSSCCGGGTEEEEE
T ss_pred CCCCCCCccCcceEEEE
Confidence 78899999999999655
No 45
>3ks4_A Polymerase cofactor VP35; RNA-binding protein, protein-RNA complex, interferon, HOST cytoplasm, interferon antiviral system evasion; 2.40A {Reston ebolavirus} PDB: 3ks8_A
Probab=23.25 E-value=20 Score=33.94 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=16.9
Q ss_pred HHhhhhCCCCCccCCcccccC
Q 007651 305 RRIERCLPAGVRFGPGWVVEN 325 (594)
Q Consensus 305 ~rI~~~Lp~g~~FG~GWVge~ 325 (594)
++=-|.+|||-|.|||||--|
T Consensus 152 qksLR~vPp~PKidrGWVciy 172 (184)
T 3ks4_A 152 QKSLRPAPPSPKIDRGWVCLF 172 (184)
T ss_dssp HTTEEECCSSCCGGGTEEEEE
T ss_pred hhccCCCCCCCccCcceEEEE
Confidence 344478999999999999755
Done!