Query 007652
Match_columns 594
No_of_seqs 192 out of 821
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 07:08:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007652.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007652hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 95.8 0.27 9.4E-06 52.2 17.4 98 19-123 130-237 (511)
2 3gia_A Uncharacterized protein 95.8 0.045 1.5E-06 57.2 11.0 78 20-109 126-208 (444)
3 3l1l_A Arginine/agmatine antip 95.0 0.17 6E-06 52.6 12.6 82 20-109 126-211 (445)
4 2bm3_A Type 2 cohesin, scaffol 29.6 15 0.0005 34.7 0.7 12 66-77 44-55 (166)
5 2l6p_A PHAC1, PHAC2 and PHAD g 26.6 24 0.00084 31.4 1.7 22 564-587 30-51 (124)
6 2jln_A MHP1; hydantoin, transp 22.5 2.4E+02 0.0083 30.2 8.9 48 92-139 207-272 (501)
7 3luu_A Uncharacterized protein 22.4 27 0.00092 29.7 1.0 18 562-579 33-50 (101)
8 1nrp_R Receptor based peptide 21.7 30 0.001 22.5 0.9 17 140-156 4-20 (26)
9 2l6n_A Uncharacterized protein 20.6 37 0.0013 30.7 1.6 16 563-578 36-51 (132)
10 2rdd_B UPF0092 membrane protei 19.3 1.4E+02 0.0047 21.1 4.1 36 299-334 1-36 (37)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=95.78 E-value=0.27 Score=52.18 Aligned_cols=98 Identities=21% Similarity=0.165 Sum_probs=54.3
Q ss_pred ehhhHHHHHHHHHhhccccccccccchhhH----HHHHHHHHHHhhhhhhcccCccee----eecChHHHHHHHHhcCcc
Q 007652 19 LVIVSIIILVALFSIQRFGTGKVGFMFAPV----LALWFFSLGSIGLYNLVKYDISVV----RAFNPIYIYLFFKKNGKD 90 (594)
Q Consensus 19 vv~is~~ILv~LF~~Q~~GT~kvg~~F~Pi----m~~Wf~~i~~~Giyni~~~~p~Vl----~A~nP~y~~~f~~~~~~~ 90 (594)
...+++++++++..+--+|....+++..-. +++-++.+.++|++.+...+|.-+ ..+.|.. .+..
T Consensus 130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 202 (511)
T 4djk_A 130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDF-------SKVG 202 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCT-------TSTT
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCc-------ccch
Confidence 456788888888899999988777654322 222344555667766554333221 1222211 1234
Q ss_pred hhhhcccchhhhcchhHhhhccCCCc--ccceeeh
Q 007652 91 AWSALGGCVLCITGAEAMFADLGHFS--VKAIQIA 123 (594)
Q Consensus 91 g~~~LG~v~L~iTG~EAlyADlGHF~--~~~I~~a 123 (594)
+|..+..++.+.+|-|+.-.=-+-.- +|.+..|
T Consensus 203 ~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~a 237 (511)
T 4djk_A 203 TLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLA 237 (511)
T ss_dssp TTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHH
Confidence 67777888999999998644333332 3444444
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=95.76 E-value=0.045 Score=57.16 Aligned_cols=78 Identities=22% Similarity=0.167 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHHhhcccccccccc---chhhHHHHHHHHHHHhhhhhhcccCcceeee-cChHHHHHHHHhcCcch-hhh
Q 007652 20 VIVSIIILVALFSIQRFGTGKVGF---MFAPVLALWFFSLGSIGLYNLVKYDISVVRA-FNPIYIYLFFKKNGKDA-WSA 94 (594)
Q Consensus 20 v~is~~ILv~LF~~Q~~GT~kvg~---~F~Pim~~Wf~~i~~~Giyni~~~~p~Vl~A-~nP~y~~~f~~~~~~~g-~~~ 94 (594)
..+++++++++..+.-+|+...++ .+..+.++=++.+.+.|+... +|+-+.. ++|. +..+ +..
T Consensus 126 ~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~~~~~~~~~~~~---------g~~~~~~~ 193 (444)
T 3gia_A 126 AITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---HPSYVIPDLAPS---------AVSGMIFA 193 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CGGGTSCCCSHH---------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ChhhcCCCCCCc---------chHHHHHH
Confidence 456788888888888889876654 444544444444445555543 4443222 2221 1112 233
Q ss_pred cccchhhhcchhHhh
Q 007652 95 LGGCVLCITGAEAMF 109 (594)
Q Consensus 95 LG~v~L~iTG~EAly 109 (594)
+...+.+.+|-|+.-
T Consensus 194 ~~~~~~a~~G~e~~~ 208 (444)
T 3gia_A 194 SAIFFLSYMGFGVIT 208 (444)
T ss_dssp HHHGGGGGTHHHHHH
T ss_pred HHHHHHHHHhHHHHH
Confidence 444568889999763
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=95.05 E-value=0.17 Score=52.60 Aligned_cols=82 Identities=12% Similarity=0.099 Sum_probs=40.9
Q ss_pred hhhHHHHHHHHHhhccccccccccc---hhhHHHHHHHHHHHhhhhhhcccCccee-eecChHHHHHHHHhcCcchhhhc
Q 007652 20 VIVSIIILVALFSIQRFGTGKVGFM---FAPVLALWFFSLGSIGLYNLVKYDISVV-RAFNPIYIYLFFKKNGKDAWSAL 95 (594)
Q Consensus 20 v~is~~ILv~LF~~Q~~GT~kvg~~---F~Pim~~Wf~~i~~~Giyni~~~~p~Vl-~A~nP~y~~~f~~~~~~~g~~~L 95 (594)
..+++++++++..+--+|.+..+++ +.++.++=++.+.+.|+ ...+|+.+ ..++|.-.- ....-+..+
T Consensus 126 ~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~---~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 197 (445)
T 3l1l_A 126 TITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGW---FWFRGETYMAAWNVSGLG-----TFGAIQSTL 197 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTS---TTCCCCCCCCC----------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhChhhcccccCccCCc-----cHHHHHHHH
Confidence 3467777777778888888776655 44444333333333443 33355543 344442110 011223344
Q ss_pred ccchhhhcchhHhh
Q 007652 96 GGCVLCITGAEAMF 109 (594)
Q Consensus 96 G~v~L~iTG~EAly 109 (594)
...+.+.+|-|+.-
T Consensus 198 ~~~~~af~G~e~~~ 211 (445)
T 3l1l_A 198 NVTLWSFIGVESAS 211 (445)
T ss_dssp HHHHHTTTTTTHHH
T ss_pred HHHHHHHHhHHHHH
Confidence 55677888988753
No 4
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=29.57 E-value=15 Score=34.69 Aligned_cols=12 Identities=42% Similarity=0.670 Sum_probs=5.8
Q ss_pred ccCcceeeecCh
Q 007652 66 KYDISVVRAFNP 77 (594)
Q Consensus 66 ~~~p~Vl~A~nP 77 (594)
+|||+||+|.||
T Consensus 44 KYDP~VLqaVn~ 55 (166)
T 2bm3_A 44 VYDPKVLMAVDP 55 (166)
T ss_dssp ECCTTTEEEECT
T ss_pred EECccceEeecC
Confidence 345555555544
No 5
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=26.62 E-value=24 Score=31.44 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=15.5
Q ss_pred HHHHhhhccCCCccccCCCCCeEE
Q 007652 564 YAFLRRNCRAGAANMSVPHMNILQ 587 (594)
Q Consensus 564 Y~FLRkNcR~~~~~L~IPh~~LlE 587 (594)
|.|||.||+++...-. .+++++
T Consensus 30 ~~wLRd~Cpcaec~~~--~qr~l~ 51 (124)
T 2l6p_A 30 AEFLRVHSPSAEVQGH--GNPVLQ 51 (124)
T ss_dssp HHHHHHTCCCSSCCSC--CCCCCC
T ss_pred HHHHHhcCCCcccCCC--Cccccc
Confidence 5899999999865543 555543
No 6
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=22.54 E-value=2.4e+02 Score=30.20 Aligned_cols=48 Identities=8% Similarity=0.101 Sum_probs=26.3
Q ss_pred hhhcccchhhhcchh---HhhhccCCCccccee------------e---hhhhhHhHHHHHHhccc
Q 007652 92 WSALGGCVLCITGAE---AMFADLGHFSVKAIQ------------I---AFTLVVFPCLLLAYMGQ 139 (594)
Q Consensus 92 ~~~LG~v~L~iTG~E---AlyADlGHF~~~~I~------------~---aw~~~V~P~L~l~Y~GQ 139 (594)
|-.+.++.+++...= ..-+|..-+.|++-. . +++....|..++.-+|=
T Consensus 207 ~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~ 272 (501)
T 2jln_A 207 MPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGA 272 (501)
T ss_dssp SCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccccCCCCccccccchhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433322 447999999876644 2 33445566665555553
No 7
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=22.40 E-value=27 Score=29.74 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=10.8
Q ss_pred HHHHHHhhhccCCCcccc
Q 007652 562 YFYAFLRRNCRAGAANMS 579 (594)
Q Consensus 562 ~~Y~FLRkNcR~~~~~L~ 579 (594)
+=|.|||.||+.+...-.
T Consensus 33 ~~~~wLRd~c~ca~c~~~ 50 (101)
T 3luu_A 33 LTFEHLRVECPCAECKGH 50 (101)
T ss_dssp EEHHHHHHTCCCC-----
T ss_pred ECHHHHHhhCCChhhcCc
Confidence 347899999997765443
No 8
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=21.68 E-value=30 Score=22.52 Aligned_cols=17 Identities=18% Similarity=0.663 Sum_probs=14.7
Q ss_pred hhhhccCCCcccCcccc
Q 007652 140 AAYLMKYPDSANRIFYD 156 (594)
Q Consensus 140 ~A~l~~~p~~~~npFy~ 156 (594)
-+||++||++.-.||+.
T Consensus 4 rsfllrnpndkyepfwe 20 (26)
T 1nrp_R 4 RSFLLRNPNDKYEPFWE 20 (26)
T ss_pred hhhhhcCCCcccCcccc
Confidence 36899999999999985
No 9
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=20.57 E-value=37 Score=30.67 Aligned_cols=16 Identities=13% Similarity=0.056 Sum_probs=12.5
Q ss_pred HHHHHhhhccCCCccc
Q 007652 563 FYAFLRRNCRAGAANM 578 (594)
Q Consensus 563 ~Y~FLRkNcR~~~~~L 578 (594)
=|.|||.||+.+...-
T Consensus 36 ~~~wLRd~Cpcaec~~ 51 (132)
T 2l6n_A 36 SCELLRVYSPSAEVHG 51 (132)
T ss_dssp EHHHHHHSCSCSSSSS
T ss_pred CHHHHHhcCCCcccCC
Confidence 3689999999876553
No 10
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=19.29 E-value=1.4e+02 Score=21.06 Aligned_cols=36 Identities=14% Similarity=0.119 Sum_probs=0.0
Q ss_pred CccHHHHHHHHHHHHHHHhhHhHHHHHHHHHhcCCC
Q 007652 299 GGWLPLAFASVFLCVMYIWNYGSVLKYRSEVREKIS 334 (594)
Q Consensus 299 GGW~pl~ia~~~~~iM~~W~~G~~~~~~~~~~~~~~ 334 (594)
|||..++.-++++.+||..-.-..+|.+.+.++-.+
T Consensus 1 ~~~~~~l~~v~~~~ifYFl~iRPQ~Kr~K~~~~m~~ 36 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYFMILRPQQKRTKEHKKLMD 36 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTGGG
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Done!