Query 007652
Match_columns 594
No_of_seqs 192 out of 821
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 07:08:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007652.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007652hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 24.6 13 0.00096 32.9 1.7 120 129-261 11-132 (173)
2 d2h8pc1 f.14.1.1 (C:22-78) Pot 20.4 15 0.0011 27.0 1.0 39 131-171 16-54 (57)
3 d2e74h1 f.23.27.1 (H:3-29) Pet 18.5 34 0.0025 21.0 2.2 20 300-319 5-24 (27)
4 d1or7a2 a.177.1.1 (A:-1-111) S 13.1 48 0.0035 25.8 2.5 24 552-575 73-96 (113)
5 d1f2qa2 b.1.1.4 (A:86-174) IgE 7.3 1E+02 0.0073 22.8 2.3 31 396-426 46-76 (89)
6 d1ug8a_ d.68.7.1 (A:) Poly(A)- 7.3 83 0.0061 24.7 1.7 20 430-449 9-28 (87)
7 d1iray2 b.1.1.4 (Y:102-204) Ty 7.0 1E+02 0.0076 23.7 2.3 26 398-423 57-82 (103)
8 d2a65a1 f.54.1.1 (A:5-513) Na( 6.6 3.3E+02 0.024 26.5 6.5 85 246-330 347-434 (509)
9 d1jl0a_ d.156.1.1 (A:) S-adeno 5.7 1E+02 0.0075 29.5 1.8 32 512-543 116-147 (325)
10 d1jb0i_ f.23.17.1 (I:) Subunit 5.7 22 0.0016 23.9 -2.3 26 214-239 13-38 (38)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=24.55 E-value=13 Score=32.92 Aligned_cols=120 Identities=11% Similarity=0.108 Sum_probs=68.3
Q ss_pred hHHHHHHhccc--hhhhccCCCcccCcccccccCcchHHHHHHHHHHHHHhhhheeechhhHHHHHHHhCCCCceeEeeC
Q 007652 129 FPCLLLAYMGQ--AAYLMKYPDSANRIFYDSVPDSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFPRLKIIHT 206 (594)
Q Consensus 129 ~P~L~l~Y~GQ--~A~l~~~p~~~~npFy~~~P~~~~~p~~ilAtlAaIIASQA~Isg~FSi~~Qa~~Lg~fPr~ki~hT 206 (594)
.|-|+++.+|+ +|+++.+-|+.-+-+-. =..+.|+ ++-++.-++||+. +++-+++++|..-+-. .
T Consensus 11 lpWL~i~l~~~~~~a~ii~~Fe~~l~~~~~---La~fiPl--i~~~gGN~G~Qs~-----ti~iR~La~g~i~~~~---~ 77 (173)
T d2yvxa3 11 VRWLVILILTGMVTSSILQGFESVLEAVTA---LAFYVPV--LLGTGGNTGNQSA-----TLIIRALATRDLDLRD---W 77 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTTTTTTS---CCCCSHH--HHHHHHHHHHHHH-----HHHHHHHHTTCSCSSS---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HhcCCchHHHHHH-----HHHHHHHhcccccchh---H
Confidence 35555555555 46677655543332211 2356666 6778888999986 4889999999643211 1
Q ss_pred CCccCCccccchHHHHHHHHhheeeEEeCCchhHHhhhhchhhhHHHHHHHHHHH
Q 007652 207 SRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTI 261 (594)
Q Consensus 207 S~~~~GQIYiP~vNw~Lmi~~l~v~~~F~~s~~l~~AYGiaV~~~m~iTT~L~~~ 261 (594)
-+...-++.+-.+|=+.+-..+.....+++...++-+=|++...+|.+.+++=++
T Consensus 78 ~~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G~~ 132 (173)
T d2yvxa3 78 RRVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAM 132 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222345666667766555544444445555555555555555555555554443
No 2
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=20.42 E-value=15 Score=26.97 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=25.1
Q ss_pred HHHHHhccchhhhccCCCcccCcccccccCcchHHHHHHHH
Q 007652 131 CLLLAYMGQAAYLMKYPDSANRIFYDSVPDSLFWPVFVLAA 171 (594)
Q Consensus 131 ~L~l~Y~GQ~A~l~~~p~~~~npFy~~~P~~~~~p~~ilAt 171 (594)
++++--++=+.|+.++.. ++.-|.++|+.++|-++-+.|
T Consensus 16 ~i~i~~~s~~~y~~E~~~--~~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 16 VIVLLAGSYLAVLAERGA--PGAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHTTS--TTCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCC--CCccccccchhhhhheeeeec
Confidence 334434455667776643 334599999999997775544
No 3
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=18.55 E-value=34 Score=20.99 Aligned_cols=20 Identities=25% Similarity=0.712 Sum_probs=15.5
Q ss_pred ccHHHHHHHHHHHHHHHhhH
Q 007652 300 GWLPLAFASVFLCVMYIWNY 319 (594)
Q Consensus 300 GW~pl~ia~~~~~iM~~W~~ 319 (594)
||+.|+.-+.-..-|..|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 78888887777778888854
No 4
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=13.10 E-value=48 Score=25.84 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=20.9
Q ss_pred CChhHHHHHHHHHHHHhhhccCCC
Q 007652 552 SFFLKKLVINYFYAFLRRNCRAGA 575 (594)
Q Consensus 552 Ss~lKk~vIn~~Y~FLRkNcR~~~ 575 (594)
.+|+.+++-|.++.++|++-|.+.
T Consensus 73 ~~wl~~I~~n~~~d~~R~~~r~~~ 96 (113)
T d1or7a2 73 YTWLYRIAVNTAKNYLVAQGRRPP 96 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 467999999999999999998654
No 5
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.34 E-value=1e+02 Score=22.75 Aligned_cols=31 Identities=10% Similarity=0.085 Sum_probs=23.9
Q ss_pred CCCceEEEEEecCCCCcEEEEEEEEeecccc
Q 007652 396 RLEERFLFRRVGPKDYHMFRCVTRYGYKDVR 426 (594)
Q Consensus 396 ~~~eR~~v~~~~~~~~~~yr~vvryGY~d~~ 426 (594)
....++.+..+...+.|.|+|.++.|+.+..
T Consensus 46 ~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~ 76 (89)
T d1f2qa2 46 YENHNISITNATVEDSGTYYCTGKVWQLDYE 76 (89)
T ss_dssp CCSSEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred cccceEEEeeeeeecCcEEEEEEEeCCCCeE
Confidence 3455788888887778999999998876543
No 6
>d1ug8a_ d.68.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.28 E-value=83 Score=24.74 Aligned_cols=20 Identities=25% Similarity=0.531 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHHHHhh
Q 007652 430 HHVFEQLLVASLEKFLRKEA 449 (594)
Q Consensus 430 ~~~f~~~lv~~L~~FI~~e~ 449 (594)
..+|.++++++|.+|+..|.
T Consensus 9 ~k~fI~~v~erIe~fL~see 28 (87)
T d1ug8a_ 9 QKKFIDQVIEKIEDFLQSEE 28 (87)
T ss_dssp HHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHcCcc
Confidence 68999999999999998754
No 7
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.97 E-value=1e+02 Score=23.68 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=20.7
Q ss_pred CceEEEEEecCCCCcEEEEEEEEeec
Q 007652 398 EERFLFRRVGPKDYHMFRCVTRYGYK 423 (594)
Q Consensus 398 ~eR~~v~~~~~~~~~~yr~vvryGY~ 423 (594)
+..+.+..+...+.|.|+|++++.|.
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~n~~~ 82 (103)
T d1iray2 57 KDRLIVMNVAEKHRGNYTCHASYTYL 82 (103)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred CCEEEEcccccccCcEEEEEEEECcC
Confidence 34567778877788999999988765
No 8
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=6.64 E-value=3.3e+02 Score=26.46 Aligned_cols=85 Identities=12% Similarity=0.212 Sum_probs=0.0
Q ss_pred chhhhHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHHHhHhcccC--CccHHHHHHHHHHHHHHHhhHhHH
Q 007652 246 IAEVGVMLVSSTLVTIVML-LIWQTNLLLVLCFPLVFGSVELLYMSAVLSKIAE--GGWLPLAFASVFLCVMYIWNYGSV 322 (594)
Q Consensus 246 iaV~~~m~iTT~L~~~v~~-~~w~~~~~~~~~~~~~f~~ie~~f~sa~l~Ki~~--GGW~pl~ia~~~~~iM~~W~~G~~ 322 (594)
.+.+....+.-..++.+.- .-|+++....+...+.+...=+.+++.......| .+=+.+.+.+.+-++...|.||.+
T Consensus 347 ~gl~s~i~~~e~~v~~l~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~l~e~i~v~w~yg~~ 426 (509)
T d2a65a1 347 AGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGAD 426 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHBTTHHHHHHHHTTTHHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHhccccchhHHHHHhcCCchhhhhhheeEEEEhhhhHHHHhcchHHHHHHHHHHHHHHHHHHHHHheeeeEecHH
Q ss_pred HHHHHHHh
Q 007652 323 LKYRSEVR 330 (594)
Q Consensus 323 ~~~~~~~~ 330 (594)
+..+.-.+
T Consensus 427 r~~~di~~ 434 (509)
T d2a65a1 427 KAWEEINR 434 (509)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
No 9
>d1jl0a_ d.156.1.1 (A:) S-adenosylmethionine decarboxylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.74 E-value=1e+02 Score=29.53 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=0.0
Q ss_pred CCcCCCCCccHHHHHHHHHHHHhCCcEEEeee
Q 007652 512 SVMALDEDPSLEYELSALREAIDSGFTYLLAH 543 (594)
Q Consensus 512 ~~~~~~~~~~v~~El~~L~~A~eaGVvYIlG~ 543 (594)
+..++....+.++|.+.|++....|..|++|+
T Consensus 116 P~~Q~~pH~sf~~Ev~~L~~~f~~G~aY~~G~ 147 (325)
T d1jl0a_ 116 PSHQGYPHRNFQEEIEFLNAIFPNGAGYCMGR 147 (325)
T ss_dssp GGGCCTTCSSHHHHHHHHHTTCSSEEEEEESC
T ss_pred cccCCcccCCHHHHHHHHHHhCCCCceEEecC
No 10
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=5.68 E-value=22 Score=23.89 Aligned_cols=26 Identities=19% Similarity=0.600 Sum_probs=0.0
Q ss_pred cccchHHHHHHHHhheeeEEeCCchh
Q 007652 214 IYIPVINWFLMIMCVVVVSIFQSTTD 239 (594)
Q Consensus 214 IYiP~vNw~Lmi~~l~v~~~F~~s~~ 239 (594)
|.||.+-|++-+.++.+...+-.|++
T Consensus 13 I~iPvv~wl~p~vvMglLFiyIEsea 38 (38)
T d1jb0i_ 13 IFIPVVCWLMPTVVMGLLFLYIEGEA 38 (38)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHCBC
T ss_pred hHHHHHHHHHHHHHHHHHheeeeccC
Done!