Query 007653
Match_columns 594
No_of_seqs 463 out of 2630
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 13:32:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007653.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007653hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0553 TPR repeat-containing 99.8 2.2E-21 4.7E-26 195.3 6.4 122 99-229 77-198 (304)
2 KOG0543 FKBP-type peptidyl-pro 99.6 7.8E-17 1.7E-21 168.4 0.2 134 99-232 204-343 (397)
3 KOG4234 TPR repeat-containing 99.5 8.8E-16 1.9E-20 146.4 0.2 126 99-228 91-216 (271)
4 KOG0548 Molecular co-chaperone 99.5 5.5E-15 1.2E-19 158.3 3.2 133 86-227 341-473 (539)
5 KOG0550 Molecular chaperone (D 99.5 1.7E-14 3.6E-19 150.3 5.0 128 99-232 245-372 (486)
6 KOG0551 Hsp90 co-chaperone CNS 99.5 3.2E-14 6.9E-19 144.8 3.9 161 22-218 31-191 (390)
7 PRK15359 type III secretion sy 99.5 1.3E-14 2.8E-19 135.4 0.9 114 106-228 27-140 (144)
8 KOG0545 Aryl-hydrocarbon recep 99.4 1.9E-14 4.1E-19 141.1 1.0 162 51-229 143-314 (329)
9 KOG4648 Uncharacterized conser 99.4 4.8E-14 1E-18 143.7 1.6 115 101-224 95-209 (536)
10 KOG4626 O-linked N-acetylgluco 99.4 1.1E-13 2.4E-18 149.5 3.2 158 84-251 233-390 (966)
11 PLN03088 SGT1, suppressor of 99.4 6.9E-14 1.5E-18 149.4 1.1 117 105-230 4-120 (356)
12 KOG4626 O-linked N-acetylgluco 99.4 6.4E-14 1.4E-18 151.3 -0.0 128 92-228 377-504 (966)
13 KOG0547 Translocase of outer m 99.4 2E-13 4.4E-18 144.6 3.1 99 99-206 111-209 (606)
14 KOG0548 Molecular co-chaperone 99.4 2.2E-13 4.7E-18 146.2 2.8 112 104-224 3-114 (539)
15 KOG1308 Hsp70-interacting prot 99.3 4.4E-13 9.6E-18 137.3 3.0 241 99-354 110-370 (377)
16 KOG1126 DNA-binding cell divis 99.3 6.3E-13 1.4E-17 145.7 2.7 176 49-236 366-545 (638)
17 TIGR02552 LcrH_SycD type III s 99.3 5.6E-13 1.2E-17 121.4 1.2 126 93-227 7-132 (135)
18 KOG0553 TPR repeat-containing 99.3 1.5E-12 3.3E-17 131.7 4.1 88 151-238 86-173 (304)
19 PRK10370 formate-dependent nit 99.3 1.3E-12 2.7E-17 128.5 2.4 130 83-221 53-185 (198)
20 KOG0624 dsRNA-activated protei 99.2 8.6E-11 1.9E-15 120.3 11.1 114 113-231 279-392 (504)
21 TIGR00990 3a0801s09 mitochondr 99.2 3E-12 6.6E-17 146.2 0.4 146 84-238 346-491 (615)
22 PRK15363 pathogenicity island 99.2 4.6E-12 9.9E-17 118.5 0.6 106 101-215 33-138 (157)
23 KOG0376 Serine-threonine phosp 99.2 1.3E-11 2.9E-16 131.7 4.0 120 103-231 4-123 (476)
24 PRK09782 bacteriophage N4 rece 99.2 8.5E-12 1.8E-16 148.1 1.6 138 84-231 591-728 (987)
25 PRK11189 lipoprotein NlpI; Pro 99.1 1.3E-11 2.9E-16 128.5 2.4 106 101-215 62-167 (296)
26 TIGR00990 3a0801s09 mitochondr 99.1 6.9E-12 1.5E-16 143.3 0.1 144 85-237 310-456 (615)
27 PRK09782 bacteriophage N4 rece 99.1 2E-11 4.4E-16 144.9 4.0 184 48-241 521-704 (987)
28 PRK12370 invasion protein regu 99.1 3.2E-11 6.9E-16 136.3 3.3 139 84-231 319-458 (553)
29 PRK12370 invasion protein regu 99.1 3.5E-11 7.6E-16 135.9 1.1 140 79-227 271-419 (553)
30 KOG1126 DNA-binding cell divis 99.0 6.7E-11 1.5E-15 129.9 2.5 146 82-236 468-613 (638)
31 KOG4642 Chaperone-dependent E3 99.0 6.3E-11 1.4E-15 116.3 1.8 116 102-226 9-129 (284)
32 TIGR02521 type_IV_pilW type IV 99.0 9.3E-11 2E-15 113.7 2.5 180 43-229 38-218 (234)
33 PRK15174 Vi polysaccharide exp 99.0 9.2E-11 2E-15 135.0 1.3 119 107-234 216-338 (656)
34 PRK15174 Vi polysaccharide exp 99.0 1E-10 2.2E-15 134.6 1.3 145 84-237 227-375 (656)
35 PRK15179 Vi polysaccharide bio 99.0 7.1E-11 1.5E-15 135.5 -0.2 143 90-241 73-215 (694)
36 PRK15359 type III secretion sy 99.0 5.4E-11 1.2E-15 110.9 -1.2 108 122-241 12-119 (144)
37 KOG1125 TPR repeat-containing 99.0 1.7E-10 3.7E-15 125.1 1.5 136 85-229 410-557 (579)
38 PRK11189 lipoprotein NlpI; Pro 99.0 2.3E-10 4.9E-15 119.3 2.1 85 87-180 82-166 (296)
39 KOG1125 TPR repeat-containing 98.9 3.4E-10 7.3E-15 122.8 3.0 203 36-238 285-522 (579)
40 TIGR02521 type_IV_pilW type IV 98.9 1.2E-10 2.6E-15 112.9 -0.7 141 84-233 46-188 (234)
41 KOG0550 Molecular chaperone (D 98.9 1.8E-10 4E-15 120.5 -0.7 158 84-241 184-348 (486)
42 COG3063 PilF Tfp pilus assembl 98.9 6.8E-10 1.5E-14 108.9 3.3 165 43-214 42-207 (250)
43 KOG1173 Anaphase-promoting com 98.9 7.2E-10 1.6E-14 119.9 3.7 138 88-227 399-536 (611)
44 PRK10370 formate-dependent nit 98.8 2.3E-10 5.1E-15 112.4 -2.0 120 113-241 49-171 (198)
45 TIGR02795 tol_pal_ybgF tol-pal 98.8 3.9E-10 8.5E-15 99.4 -0.7 111 103-219 2-115 (119)
46 PF13414 TPR_11: TPR repeat; P 98.8 1.4E-10 3E-15 93.5 -3.5 65 147-211 4-69 (69)
47 KOG1155 Anaphase-promoting com 98.8 1.2E-09 2.5E-14 115.9 2.1 141 92-241 353-493 (559)
48 PRK11447 cellulose synthase su 98.8 7.7E-10 1.7E-14 135.1 0.1 116 108-232 356-513 (1157)
49 COG3063 PilF Tfp pilus assembl 98.8 2.6E-09 5.7E-14 104.8 3.7 142 81-231 47-190 (250)
50 PF13429 TPR_15: Tetratricopep 98.8 5.9E-10 1.3E-14 114.7 -0.8 133 100-241 143-275 (280)
51 KOG1155 Anaphase-promoting com 98.8 7.6E-10 1.7E-14 117.3 -0.1 130 103-241 330-459 (559)
52 KOG0624 dsRNA-activated protei 98.8 1.2E-09 2.6E-14 112.1 1.2 119 99-226 34-155 (504)
53 TIGR02917 PEP_TPR_lipo putativ 98.8 1.2E-09 2.6E-14 127.0 1.2 136 86-231 753-888 (899)
54 PRK11447 cellulose synthase su 98.8 1.7E-09 3.8E-14 132.1 2.2 142 84-225 366-540 (1157)
55 KOG0547 Translocase of outer m 98.8 2.3E-09 5E-14 114.3 2.3 207 23-238 346-561 (606)
56 PLN02789 farnesyltranstransfer 98.8 2.4E-09 5.2E-14 112.7 2.4 133 86-227 54-189 (320)
57 cd00189 TPR Tetratricopeptide 98.8 8.5E-10 1.8E-14 90.0 -0.9 99 105-212 2-100 (100)
58 PF12895 Apc3: Anaphase-promot 98.8 5.4E-10 1.2E-14 94.1 -2.4 83 116-206 2-84 (84)
59 PRK02603 photosystem I assembl 98.8 1.2E-09 2.7E-14 104.5 -0.5 109 99-213 31-153 (172)
60 KOG2003 TPR repeat-containing 98.7 5.3E-09 1.1E-13 110.3 3.7 183 40-231 423-609 (840)
61 PF13414 TPR_11: TPR repeat; P 98.7 5.1E-10 1.1E-14 90.2 -3.1 67 102-177 2-69 (69)
62 TIGR02917 PEP_TPR_lipo putativ 98.7 8.6E-09 1.9E-13 119.8 4.6 180 43-231 63-244 (899)
63 PLN02789 farnesyltranstransfer 98.7 5.5E-09 1.2E-13 110.0 1.9 167 51-226 52-229 (320)
64 PRK15179 Vi polysaccharide bio 98.7 9.9E-09 2.1E-13 118.0 4.2 123 85-216 102-224 (694)
65 COG4235 Cytochrome c biogenesi 98.6 1.1E-08 2.3E-13 104.5 2.4 140 78-226 131-273 (287)
66 TIGR02552 LcrH_SycD type III s 98.6 2.4E-09 5.1E-14 97.4 -2.4 104 124-236 4-107 (135)
67 CHL00033 ycf3 photosystem I as 98.6 5.2E-09 1.1E-13 99.7 -0.5 110 99-214 31-154 (168)
68 TIGR03302 OM_YfiO outer membra 98.6 6.9E-09 1.5E-13 103.7 0.1 143 86-234 50-223 (235)
69 PRK11788 tetratricopeptide rep 98.6 9.7E-09 2.1E-13 109.9 1.2 120 104-232 108-232 (389)
70 PF13432 TPR_16: Tetratricopep 98.6 2.2E-09 4.9E-14 85.5 -2.8 64 151-214 2-65 (65)
71 TIGR03302 OM_YfiO outer membra 98.6 9.2E-09 2E-13 102.7 0.6 118 99-222 29-157 (235)
72 PRK10049 pgaA outer membrane p 98.6 3.9E-08 8.4E-13 115.4 5.4 108 103-219 359-466 (765)
73 PRK15331 chaperone protein Sic 98.6 7.8E-09 1.7E-13 97.4 -0.4 121 99-229 33-153 (165)
74 PRK11788 tetratricopeptide rep 98.6 1.6E-08 3.4E-13 108.3 1.3 122 87-212 125-246 (389)
75 PRK10049 pgaA outer membrane p 98.6 2.6E-08 5.7E-13 116.9 3.2 130 88-227 34-163 (765)
76 COG5010 TadD Flp pilus assembl 98.5 2E-08 4.4E-13 100.3 1.2 127 96-231 93-219 (257)
77 PRK15363 pathogenicity island 98.5 1.6E-08 3.4E-13 94.9 -1.9 95 148-242 37-131 (157)
78 PRK10803 tol-pal system protei 98.4 5.1E-08 1.1E-12 100.0 0.6 110 103-218 142-255 (263)
79 PF13371 TPR_9: Tetratricopept 98.4 3.8E-08 8.2E-13 80.0 -0.3 69 153-221 2-70 (73)
80 KOG1129 TPR repeat-containing 98.4 1.2E-07 2.5E-12 97.2 2.6 137 84-229 305-444 (478)
81 KOG2002 TPR-containing nuclear 98.4 1.4E-07 3.1E-12 107.7 3.2 138 85-231 628-767 (1018)
82 PLN03088 SGT1, suppressor of 98.4 5.3E-08 1.1E-12 104.3 -0.5 103 84-195 17-119 (356)
83 PF13432 TPR_16: Tetratricopep 98.3 2.5E-08 5.4E-13 79.4 -3.1 64 108-180 2-65 (65)
84 KOG4555 TPR repeat-containing 98.3 8.5E-08 1.9E-12 86.5 -0.0 102 102-212 42-147 (175)
85 PF14559 TPR_19: Tetratricopep 98.3 9E-08 2E-12 76.7 0.1 66 157-222 2-67 (68)
86 KOG4648 Uncharacterized conser 98.3 6.8E-08 1.5E-12 99.3 -0.9 92 150-241 101-192 (536)
87 KOG0546 HSP90 co-chaperone CPR 98.3 4.3E-07 9.3E-12 94.2 4.0 134 99-232 218-361 (372)
88 PF13429 TPR_15: Tetratricopep 98.3 3.7E-08 8E-13 101.4 -3.9 128 102-236 109-236 (280)
89 PF09976 TPR_21: Tetratricopep 98.3 3.7E-07 8.1E-12 84.9 3.0 99 102-207 47-145 (145)
90 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 1.7E-07 3.7E-12 101.0 0.4 69 141-209 70-141 (453)
91 COG4783 Putative Zn-dependent 98.3 4.9E-07 1.1E-11 97.2 3.3 119 103-230 306-424 (484)
92 COG4783 Putative Zn-dependent 98.2 2.5E-07 5.4E-12 99.4 0.2 133 87-228 324-456 (484)
93 CHL00033 ycf3 photosystem I as 98.2 2E-07 4.3E-12 88.8 -0.6 114 109-229 5-121 (168)
94 TIGR00540 hemY_coli hemY prote 98.2 7.8E-07 1.7E-11 97.0 3.9 132 101-240 261-396 (409)
95 PF13512 TPR_18: Tetratricopep 98.2 2.3E-07 4.9E-12 85.7 -0.8 109 102-216 9-135 (142)
96 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 5.4E-07 1.2E-11 97.1 1.3 102 98-207 70-175 (453)
97 cd05804 StaR_like StaR_like; a 98.2 7.4E-07 1.6E-11 94.2 2.3 107 97-212 108-218 (355)
98 cd00189 TPR Tetratricopeptide 98.2 4.3E-07 9.4E-12 73.7 0.1 84 148-231 2-85 (100)
99 KOG2076 RNA polymerase III tra 98.1 4.8E-07 1E-11 102.8 0.2 117 103-228 139-255 (895)
100 COG1729 Uncharacterized protei 98.1 4.8E-07 1E-11 91.5 0.1 109 104-218 142-253 (262)
101 PF14559 TPR_19: Tetratricopep 98.1 3.1E-07 6.7E-12 73.5 -1.5 67 113-188 1-67 (68)
102 PRK10866 outer membrane biogen 98.1 5.4E-07 1.2E-11 91.5 -0.2 124 102-231 31-178 (243)
103 PRK14574 hmsH outer membrane p 98.1 2.6E-06 5.7E-11 100.0 5.3 178 42-229 40-218 (822)
104 KOG1128 Uncharacterized conser 98.1 5E-07 1.1E-11 100.7 -0.8 124 100-232 482-605 (777)
105 PF13371 TPR_9: Tetratricopept 98.1 4.7E-07 1E-11 73.6 -0.9 69 110-187 2-70 (73)
106 PRK10153 DNA-binding transcrip 98.1 3.9E-06 8.5E-11 94.0 6.2 126 80-215 353-488 (517)
107 COG5010 TadD Flp pilus assembl 98.1 8.6E-07 1.9E-11 88.8 0.6 128 94-231 58-185 (257)
108 KOG4162 Predicted calmodulin-b 98.1 1E-06 2.2E-11 98.9 0.7 110 97-215 678-789 (799)
109 KOG1308 Hsp70-interacting prot 98.1 1.9E-06 4.2E-11 89.1 2.7 77 157-233 125-201 (377)
110 PRK14574 hmsH outer membrane p 98.1 7E-07 1.5E-11 104.7 -0.7 126 82-216 47-172 (822)
111 PF13525 YfiO: Outer membrane 98.1 5.9E-07 1.3E-11 88.6 -1.2 123 102-230 4-143 (203)
112 PRK02603 photosystem I assembl 98.1 6.4E-07 1.4E-11 85.7 -1.0 86 146-231 35-123 (172)
113 KOG3060 Uncharacterized conser 98.0 1.6E-06 3.5E-11 86.4 1.3 120 100-228 83-202 (289)
114 KOG1129 TPR repeat-containing 98.0 3.3E-06 7.2E-11 86.7 3.4 130 88-223 343-472 (478)
115 PF12688 TPR_5: Tetratrico pep 98.0 5.2E-07 1.1E-11 81.6 -2.3 99 104-208 2-103 (120)
116 KOG3060 Uncharacterized conser 98.0 6.5E-06 1.4E-10 82.2 4.9 136 85-229 102-240 (289)
117 COG4785 NlpI Lipoprotein NlpI, 98.0 3.5E-06 7.5E-11 82.3 2.8 108 99-215 61-168 (297)
118 KOG2002 TPR-containing nuclear 98.0 2.8E-06 6E-11 97.4 2.5 138 85-228 252-390 (1018)
119 KOG1840 Kinesin light chain [C 98.0 6.1E-07 1.3E-11 99.3 -3.0 148 98-246 236-399 (508)
120 PF06552 TOM20_plant: Plant sp 97.9 1E-06 2.2E-11 84.1 -1.8 98 119-225 7-125 (186)
121 KOG2076 RNA polymerase III tra 97.9 4.5E-06 9.8E-11 95.1 3.0 119 84-211 154-272 (895)
122 PRK10747 putative protoheme IX 97.9 4.6E-06 9.9E-11 90.7 2.6 128 99-239 259-386 (398)
123 TIGR02795 tol_pal_ybgF tol-pal 97.9 8.1E-07 1.8E-11 78.0 -3.0 86 148-233 4-95 (119)
124 KOG1156 N-terminal acetyltrans 97.9 7.1E-06 1.5E-10 90.7 3.4 147 77-232 15-161 (700)
125 PF13424 TPR_12: Tetratricopep 97.9 3.4E-07 7.3E-12 75.6 -5.8 64 146-209 5-75 (78)
126 KOG1310 WD40 repeat protein [G 97.8 5.1E-06 1.1E-10 89.8 1.0 109 98-215 369-480 (758)
127 KOG1156 N-terminal acetyltrans 97.8 1.4E-05 3.1E-10 88.4 3.9 119 105-232 9-127 (700)
128 cd05804 StaR_like StaR_like; a 97.8 6.7E-06 1.5E-10 86.9 1.1 141 84-231 58-203 (355)
129 PRK14720 transcript cleavage f 97.8 6.2E-06 1.4E-10 96.4 0.8 144 63-209 24-178 (906)
130 PRK11906 transcriptional regul 97.7 1.4E-05 3.1E-10 86.5 2.8 129 77-214 266-406 (458)
131 PF13424 TPR_12: Tetratricopep 97.7 8.5E-07 1.8E-11 73.1 -5.1 74 100-175 2-75 (78)
132 KOG1174 Anaphase-promoting com 97.7 2.6E-05 5.7E-10 82.4 4.6 128 87-223 318-447 (564)
133 KOG1127 TPR repeat-containing 97.7 1.4E-05 3E-10 91.8 2.7 159 83-241 472-657 (1238)
134 KOG4234 TPR repeat-containing 97.7 5.4E-06 1.2E-10 80.1 -0.6 89 153-241 102-195 (271)
135 PRK14720 transcript cleavage f 97.7 6.6E-06 1.4E-10 96.2 -0.3 130 97-227 25-163 (906)
136 KOG1128 Uncharacterized conser 97.7 1.9E-05 4.1E-10 88.4 3.2 119 99-232 453-571 (777)
137 KOG0543 FKBP-type peptidyl-pro 97.7 1.1E-05 2.4E-10 85.5 0.7 98 103-209 257-355 (397)
138 KOG1173 Anaphase-promoting com 97.7 5.7E-06 1.2E-10 90.3 -1.9 242 35-310 242-485 (611)
139 KOG2003 TPR repeat-containing 97.6 2E-05 4.4E-10 83.7 2.0 129 99-227 554-707 (840)
140 PF09976 TPR_21: Tetratricopep 97.6 4.7E-06 1E-10 77.5 -2.5 127 103-236 11-140 (145)
141 KOG4162 Predicted calmodulin-b 97.6 7.5E-06 1.6E-10 92.0 -1.4 127 104-239 651-779 (799)
142 PF12895 Apc3: Anaphase-promot 97.6 6.3E-06 1.4E-10 69.2 -1.7 73 159-232 2-76 (84)
143 COG2956 Predicted N-acetylgluc 97.6 1.1E-05 2.4E-10 83.0 -0.6 126 102-231 140-266 (389)
144 PF13431 TPR_17: Tetratricopep 97.6 1.5E-05 3.3E-10 55.6 0.0 34 168-201 1-34 (34)
145 KOG1840 Kinesin light chain [C 97.6 8.6E-06 1.9E-10 90.4 -1.9 114 96-210 192-313 (508)
146 COG2956 Predicted N-acetylgluc 97.6 0.00016 3.4E-09 74.7 6.9 110 97-215 174-284 (389)
147 PRK10803 tol-pal system protei 97.5 6.9E-06 1.5E-10 84.3 -3.2 95 148-242 144-245 (263)
148 PRK10153 DNA-binding transcrip 97.5 1.7E-05 3.8E-10 88.8 -0.5 126 103-238 339-477 (517)
149 KOG4642 Chaperone-dependent E3 97.5 3E-05 6.5E-10 76.9 0.4 77 152-228 16-92 (284)
150 PF12569 NARP1: NMDA receptor- 97.5 2.4E-05 5.2E-10 87.5 -0.5 76 148-223 196-271 (517)
151 PF00515 TPR_1: Tetratricopept 97.5 3.1E-05 6.8E-10 53.4 0.3 34 180-213 1-34 (34)
152 PF04733 Coatomer_E: Coatomer 97.5 5.9E-05 1.3E-09 78.6 2.3 120 88-216 150-272 (290)
153 TIGR00540 hemY_coli hemY prote 97.4 5.1E-05 1.1E-09 82.7 1.9 122 84-213 99-220 (409)
154 KOG0495 HAT repeat protein [RN 97.4 0.00012 2.6E-09 81.2 3.9 136 84-229 599-734 (913)
155 KOG1130 Predicted G-alpha GTPa 97.4 3.6E-05 7.9E-10 81.3 -0.3 107 100-209 132-264 (639)
156 PF13428 TPR_14: Tetratricopep 97.3 7.5E-05 1.6E-09 55.0 0.9 43 180-222 1-43 (44)
157 PF14938 SNAP: Soluble NSF att 97.3 4.6E-05 1E-09 79.0 -0.7 114 99-215 110-231 (282)
158 PRK10747 putative protoheme IX 97.3 9.4E-05 2E-09 80.5 1.7 103 105-215 120-222 (398)
159 KOG1127 TPR repeat-containing 97.3 0.00019 4.2E-09 82.8 4.0 113 102-223 561-673 (1238)
160 COG4235 Cytochrome c biogenesi 97.3 6.5E-05 1.4E-09 77.1 0.2 108 117-233 136-246 (287)
161 KOG1174 Anaphase-promoting com 97.2 0.00015 3.3E-09 76.8 2.6 162 48-221 244-409 (564)
162 PF09295 ChAPs: ChAPs (Chs5p-A 97.2 0.00011 2.5E-09 79.4 1.6 105 105-218 202-306 (395)
163 PF07719 TPR_2: Tetratricopept 97.2 0.0001 2.3E-09 50.4 0.9 34 180-213 1-34 (34)
164 PF12688 TPR_5: Tetratrico pep 97.2 4.8E-05 1E-09 68.8 -1.6 85 148-232 3-93 (120)
165 KOG1130 Predicted G-alpha GTPa 97.2 4.1E-05 8.8E-10 80.9 -2.5 106 103-211 195-306 (639)
166 PRK11906 transcriptional regul 97.2 7.5E-05 1.6E-09 81.0 -0.6 115 106-229 258-387 (458)
167 PRK15331 chaperone protein Sic 97.1 7.3E-05 1.6E-09 70.8 -1.6 92 150-241 41-132 (165)
168 KOG2376 Signal recognition par 97.0 0.00057 1.2E-08 75.4 3.6 153 43-208 19-203 (652)
169 KOG0551 Hsp90 co-chaperone CNS 96.9 0.00028 6E-09 73.1 1.0 80 150-229 85-168 (390)
170 PF04733 Coatomer_E: Coatomer 96.9 0.00056 1.2E-08 71.3 3.3 132 82-229 115-250 (290)
171 KOG2376 Signal recognition par 96.9 0.0007 1.5E-08 74.7 3.9 122 81-215 24-145 (652)
172 PF09295 ChAPs: ChAPs (Chs5p-A 96.9 0.00023 5.1E-09 77.0 -0.1 108 114-233 180-287 (395)
173 PF12968 DUF3856: Domain of Un 96.9 7E-05 1.5E-09 66.7 -3.4 101 108-208 14-128 (144)
174 PRK10866 outer membrane biogen 96.9 0.00065 1.4E-08 69.1 3.0 122 101-228 67-226 (243)
175 PF14853 Fis1_TPR_C: Fis1 C-te 96.8 0.00074 1.6E-08 52.0 2.3 49 181-229 2-50 (53)
176 PF06552 TOM20_plant: Plant sp 96.8 0.00019 4.2E-09 68.7 -1.1 88 85-181 7-115 (186)
177 KOG2471 TPR repeat-containing 96.8 0.00088 1.9E-08 72.4 3.4 128 98-226 235-381 (696)
178 PF13428 TPR_14: Tetratricopep 96.8 0.00013 2.9E-09 53.7 -2.3 42 148-189 3-44 (44)
179 COG1729 Uncharacterized protei 96.6 0.00021 4.5E-09 72.6 -2.6 95 149-243 144-244 (262)
180 COG4700 Uncharacterized protei 96.6 0.00043 9.4E-09 66.5 -0.3 116 103-228 89-207 (251)
181 COG4105 ComL DNA uptake lipopr 96.6 0.00072 1.6E-08 68.2 0.9 124 102-231 33-170 (254)
182 KOG0495 HAT repeat protein [RN 96.6 0.001 2.2E-08 74.1 2.0 111 103-222 651-761 (913)
183 PF13525 YfiO: Outer membrane 96.6 0.0012 2.6E-08 65.0 2.3 125 99-229 38-193 (203)
184 COG3071 HemY Uncharacterized e 96.5 0.0024 5.3E-08 67.6 4.6 183 36-231 186-378 (400)
185 PF00515 TPR_1: Tetratricopept 96.5 0.0012 2.7E-08 45.2 1.6 34 103-136 1-34 (34)
186 KOG4340 Uncharacterized conser 96.5 0.0028 6.1E-08 65.0 4.5 65 101-174 142-206 (459)
187 KOG2796 Uncharacterized conser 96.5 0.0015 3.2E-08 65.9 2.5 113 99-214 208-320 (366)
188 PF07719 TPR_2: Tetratricopept 96.5 0.0017 3.7E-08 44.2 1.9 34 103-136 1-34 (34)
189 KOG4151 Myosin assembly protei 96.4 0.0016 3.4E-08 74.3 2.3 125 99-228 49-175 (748)
190 KOG0376 Serine-threonine phosp 96.4 0.001 2.3E-08 72.0 0.6 110 82-200 17-128 (476)
191 PF14938 SNAP: Soluble NSF att 96.3 0.00042 9E-09 71.8 -2.8 111 98-212 70-187 (282)
192 PF03704 BTAD: Bacterial trans 96.3 0.00039 8.6E-09 64.3 -2.9 98 109-206 12-122 (146)
193 KOG3785 Uncharacterized conser 96.2 0.0013 2.7E-08 68.8 0.3 104 113-228 32-135 (557)
194 PRK10941 hypothetical protein; 96.2 0.001 2.2E-08 68.5 -0.4 81 142-222 177-257 (269)
195 PF13181 TPR_8: Tetratricopept 96.2 0.0011 2.4E-08 45.4 -0.1 34 180-213 1-34 (34)
196 KOG4555 TPR repeat-containing 96.2 0.00058 1.3E-08 62.1 -2.1 61 153-213 50-110 (175)
197 PF13431 TPR_17: Tetratricopep 96.1 0.00054 1.2E-08 47.8 -2.1 34 125-167 1-34 (34)
198 COG4785 NlpI Lipoprotein NlpI, 96.1 0.0088 1.9E-07 59.0 5.2 87 87-182 83-169 (297)
199 KOG4507 Uncharacterized conser 96.0 0.0019 4.2E-08 71.1 0.3 112 106-225 610-721 (886)
200 COG0457 NrfG FOG: TPR repeat [ 95.9 0.0052 1.1E-07 56.7 2.8 122 98-228 90-216 (291)
201 KOG4340 Uncharacterized conser 95.8 0.0024 5.3E-08 65.4 0.0 116 113-241 20-135 (459)
202 PF15015 NYD-SP12_N: Spermatog 95.7 0.0018 4E-08 68.9 -1.2 103 104-206 177-288 (569)
203 PF12569 NARP1: NMDA receptor- 95.7 0.0032 7E-08 70.6 0.7 128 103-239 194-330 (517)
204 PF13512 TPR_18: Tetratricopep 95.7 0.0054 1.2E-07 56.9 1.9 79 96-180 40-133 (142)
205 KOG3785 Uncharacterized conser 95.6 0.0056 1.2E-07 64.1 1.6 114 106-229 60-200 (557)
206 smart00028 TPR Tetratricopepti 95.5 0.0071 1.5E-07 38.8 1.3 33 181-213 2-34 (34)
207 PF10300 DUF3808: Protein of u 95.4 0.0025 5.4E-08 70.9 -1.9 118 84-206 248-373 (468)
208 COG0457 NrfG FOG: TPR repeat [ 95.3 0.0082 1.8E-07 55.4 1.6 105 112-223 139-245 (291)
209 KOG2610 Uncharacterized conser 94.9 0.061 1.3E-06 56.3 6.8 112 104-224 104-219 (491)
210 PF13174 TPR_6: Tetratricopept 94.7 0.012 2.5E-07 39.7 0.7 33 181-213 1-33 (33)
211 PLN03081 pentatricopeptide (PP 94.7 0.015 3.1E-07 68.0 1.9 89 106-205 465-553 (697)
212 KOG1586 Protein required for f 94.6 0.022 4.7E-07 56.9 2.5 173 40-227 58-244 (288)
213 KOG3364 Membrane protein invol 94.6 0.0087 1.9E-07 54.8 -0.3 83 148-230 34-121 (149)
214 PF13176 TPR_7: Tetratricopept 94.4 0.0061 1.3E-07 42.8 -1.4 29 182-210 1-29 (36)
215 PF04184 ST7: ST7 protein; In 94.3 0.044 9.6E-07 60.1 4.2 133 72-208 173-323 (539)
216 KOG0545 Aryl-hydrocarbon recep 94.0 0.011 2.4E-07 59.3 -0.9 81 148-228 180-278 (329)
217 COG3071 HemY Uncharacterized e 94.0 0.049 1.1E-06 58.0 3.8 127 33-173 259-388 (400)
218 PF13176 TPR_7: Tetratricopept 93.9 0.029 6.2E-07 39.3 1.3 30 105-134 1-30 (36)
219 COG2976 Uncharacterized protei 93.9 0.052 1.1E-06 52.9 3.4 103 102-212 88-191 (207)
220 COG4976 Predicted methyltransf 93.8 0.023 5E-07 56.5 1.0 61 155-215 4-64 (287)
221 PF13181 TPR_8: Tetratricopept 93.8 0.033 7.1E-07 37.9 1.5 33 103-135 1-33 (34)
222 KOG1941 Acetylcholine receptor 93.7 0.011 2.3E-07 62.2 -1.6 104 104-210 123-236 (518)
223 KOG3824 Huntingtin interacting 93.7 0.042 9.1E-07 56.8 2.4 115 103-226 116-235 (472)
224 COG3898 Uncharacterized membra 93.6 0.057 1.2E-06 57.5 3.4 181 34-220 115-302 (531)
225 COG3118 Thioredoxin domain-con 93.0 0.11 2.3E-06 53.8 4.2 56 173-228 229-286 (304)
226 PLN03081 pentatricopeptide (PP 93.0 0.14 3E-06 59.9 5.7 116 105-229 428-543 (697)
227 KOG3824 Huntingtin interacting 92.9 0.051 1.1E-06 56.2 1.8 72 151-222 121-192 (472)
228 KOG2053 Mitochondrial inherita 92.7 0.038 8.2E-07 64.0 0.5 143 79-231 19-162 (932)
229 KOG2053 Mitochondrial inherita 92.6 0.056 1.2E-06 62.7 1.6 98 113-220 19-116 (932)
230 KOG3081 Vesicle coat complex C 92.6 0.19 4.2E-06 51.2 5.2 92 116-216 186-278 (299)
231 KOG2471 TPR repeat-containing 92.2 0.033 7.1E-07 60.7 -0.8 90 103-192 283-381 (696)
232 PLN03077 Protein ECB2; Provisi 92.0 0.074 1.6E-06 63.6 1.8 91 103-204 625-715 (857)
233 PF14561 TPR_20: Tetratricopep 91.9 0.098 2.1E-06 44.9 2.0 65 165-229 7-73 (90)
234 PF05843 Suf: Suppressor of fo 91.9 0.042 9E-07 57.0 -0.4 113 106-227 4-120 (280)
235 PF14853 Fis1_TPR_C: Fis1 C-te 91.6 0.016 3.4E-07 44.8 -2.9 39 148-186 3-41 (53)
236 PF13174 TPR_6: Tetratricopept 91.6 0.1 2.2E-06 34.9 1.5 32 104-135 1-32 (33)
237 PRK04841 transcriptional regul 91.6 0.024 5.2E-07 67.8 -2.9 105 104-211 492-604 (903)
238 KOG4814 Uncharacterized conser 91.5 0.054 1.2E-06 60.7 -0.0 102 104-208 355-456 (872)
239 smart00028 TPR Tetratricopepti 91.3 0.11 2.3E-06 33.0 1.3 32 104-135 2-33 (34)
240 KOG3081 Vesicle coat complex C 90.9 0.082 1.8E-06 53.8 0.5 118 105-229 139-256 (299)
241 COG2912 Uncharacterized conser 90.8 0.044 9.5E-07 56.1 -1.5 74 145-218 180-253 (269)
242 PF04184 ST7: ST7 protein; In 90.7 0.062 1.3E-06 59.0 -0.5 108 103-217 259-383 (539)
243 PRK04841 transcriptional regul 90.6 0.038 8.3E-07 66.1 -2.5 108 103-211 531-643 (903)
244 KOG1070 rRNA processing protei 90.4 0.13 2.8E-06 62.2 1.7 102 120-231 1514-1617(1710)
245 COG4700 Uncharacterized protei 90.1 0.077 1.7E-06 51.4 -0.4 104 118-231 71-177 (251)
246 PF09986 DUF2225: Uncharacteri 89.9 0.083 1.8E-06 52.7 -0.3 97 112-210 86-195 (214)
247 PLN03218 maturation of RBCL 1; 89.7 0.15 3.3E-06 62.2 1.6 92 105-206 616-710 (1060)
248 KOG3364 Membrane protein invol 89.5 0.16 3.5E-06 46.7 1.2 78 100-184 29-109 (149)
249 KOG4507 Uncharacterized conser 89.5 0.11 2.5E-06 57.7 0.3 96 112-214 222-317 (886)
250 KOG1070 rRNA processing protei 89.2 0.34 7.4E-06 58.8 3.9 118 101-227 1528-1647(1710)
251 COG4976 Predicted methyltransf 89.1 0.13 2.8E-06 51.3 0.4 60 112-180 4-63 (287)
252 KOG1915 Cell cycle control pro 88.4 0.86 1.9E-05 50.0 5.9 102 99-210 400-501 (677)
253 COG4105 ComL DNA uptake lipopr 87.9 0.12 2.5E-06 52.6 -0.9 70 148-217 36-108 (254)
254 KOG2396 HAT (Half-A-TPR) repea 87.6 0.16 3.4E-06 55.8 -0.2 94 120-222 88-182 (568)
255 PRK10941 hypothetical protein; 87.5 0.14 3.1E-06 52.8 -0.6 76 103-187 181-256 (269)
256 PF13374 TPR_10: Tetratricopep 87.3 0.2 4.4E-06 35.2 0.3 30 180-209 2-31 (42)
257 PF10602 RPN7: 26S proteasome 87.2 0.16 3.4E-06 49.2 -0.5 104 100-209 33-142 (177)
258 PLN03077 Protein ECB2; Provisi 87.1 0.28 6.1E-06 58.7 1.6 99 102-212 553-656 (857)
259 PF04781 DUF627: Protein of un 87.0 0.22 4.9E-06 44.2 0.5 96 109-210 2-108 (111)
260 PF13374 TPR_10: Tetratricopep 86.7 0.41 8.8E-06 33.6 1.6 33 103-135 2-34 (42)
261 KOG2796 Uncharacterized conser 86.7 0.3 6.4E-06 49.8 1.2 70 102-180 251-320 (366)
262 PLN03218 maturation of RBCL 1; 86.3 0.21 4.6E-06 60.9 -0.1 61 148-208 581-642 (1060)
263 KOG1941 Acetylcholine receptor 86.1 0.051 1.1E-06 57.3 -4.7 107 104-210 163-276 (518)
264 PF05843 Suf: Suppressor of fo 85.6 0.3 6.6E-06 50.6 0.7 128 85-221 17-148 (280)
265 KOG1915 Cell cycle control pro 85.4 0.38 8.3E-06 52.6 1.3 115 90-213 60-174 (677)
266 PF03704 BTAD: Bacterial trans 83.6 0.34 7.3E-06 44.6 -0.1 73 177-249 59-131 (146)
267 KOG2610 Uncharacterized conser 83.0 0.55 1.2E-05 49.4 1.2 108 93-206 127-235 (491)
268 KOG1586 Protein required for f 82.7 0.33 7.2E-06 48.7 -0.5 121 92-216 63-190 (288)
269 smart00727 STI1 Heat shock cha 82.6 2 4.2E-05 30.9 3.7 31 483-515 3-33 (41)
270 KOG1585 Protein required for f 81.9 0.94 2E-05 45.8 2.3 109 99-210 106-220 (308)
271 PF07721 TPR_4: Tetratricopept 81.3 0.87 1.9E-05 29.4 1.3 26 180-205 1-26 (26)
272 COG3914 Spy Predicted O-linked 81.2 1.5 3.2E-05 49.3 3.7 110 109-227 73-189 (620)
273 PF11116 DUF2624: Protein of u 80.8 2.9 6.2E-05 35.5 4.5 43 492-534 3-45 (85)
274 COG2912 Uncharacterized conser 79.9 0.92 2E-05 46.6 1.5 78 102-188 180-257 (269)
275 PF10516 SHNi-TPR: SHNi-TPR; 79.4 0.58 1.3E-05 33.5 -0.1 29 181-209 2-30 (38)
276 PRK13184 pknD serine/threonine 79.3 0.54 1.2E-05 56.4 -0.4 114 109-229 481-601 (932)
277 PF12862 Apc5: Anaphase-promot 77.8 0.16 3.4E-06 43.7 -4.1 66 113-212 8-73 (94)
278 PF02259 FAT: FAT domain; Int 77.6 0.91 2E-05 47.7 0.7 127 99-230 142-308 (352)
279 PF03672 UPF0154: Uncharacteri 76.3 3.6 7.9E-05 32.9 3.6 36 499-534 25-62 (64)
280 PF10300 DUF3808: Protein of u 74.8 1.1 2.5E-05 49.9 0.6 88 116-212 246-337 (468)
281 PF02259 FAT: FAT domain; Int 74.5 0.39 8.5E-06 50.4 -3.0 111 102-212 183-341 (352)
282 KOG1310 WD40 repeat protein [G 73.3 1.8 3.8E-05 48.2 1.5 76 159-234 387-465 (758)
283 PF07079 DUF1347: Protein of u 73.1 1.6 3.4E-05 47.8 1.1 72 153-228 469-544 (549)
284 PRK00523 hypothetical protein; 72.0 8.1 0.00017 31.7 4.6 30 504-533 40-69 (72)
285 PF09613 HrpB1_HrpK: Bacterial 71.1 2.7 5.9E-05 39.9 2.1 75 155-229 19-93 (160)
286 PF10373 EST1_DNA_bind: Est1 D 69.9 2 4.3E-05 43.7 1.0 62 165-226 1-62 (278)
287 KOG1550 Extracellular protein 69.4 1.8 3.9E-05 49.4 0.6 105 106-225 291-407 (552)
288 PHA02537 M terminase endonucle 68.6 5.5 0.00012 40.2 3.7 105 113-228 93-225 (230)
289 PF08631 SPO22: Meiosis protei 68.5 1.5 3.2E-05 45.4 -0.3 112 99-211 31-152 (278)
290 PF12862 Apc5: Anaphase-promot 68.2 1.1 2.3E-05 38.5 -1.2 19 157-175 9-27 (94)
291 COG5191 Uncharacterized conser 66.9 0.76 1.6E-05 47.9 -2.7 88 126-222 96-184 (435)
292 PF09613 HrpB1_HrpK: Bacterial 66.8 2.3 5E-05 40.4 0.6 86 102-196 9-94 (160)
293 PF07720 TPR_3: Tetratricopept 66.5 2.7 5.8E-05 29.7 0.8 33 181-213 2-36 (36)
294 PRK01844 hypothetical protein; 66.1 12 0.00027 30.6 4.6 35 499-533 32-68 (72)
295 KOG0530 Protein farnesyltransf 65.6 1.8 3.8E-05 44.4 -0.4 110 113-231 53-164 (318)
296 PF15015 NYD-SP12_N: Spermatog 65.5 3.6 7.8E-05 44.7 1.8 76 158-233 195-281 (569)
297 PF14561 TPR_20: Tetratricopep 64.4 4.7 0.0001 34.5 2.1 45 92-136 11-55 (90)
298 PF10579 Rapsyn_N: Rapsyn N-te 64.0 1.3 2.8E-05 37.0 -1.4 34 103-136 6-39 (80)
299 KOG0530 Protein farnesyltransf 63.5 7.6 0.00017 39.9 3.6 90 116-231 39-129 (318)
300 COG0790 FOG: TPR repeat, SEL1 63.4 3.4 7.4E-05 42.5 1.2 108 102-221 108-230 (292)
301 KOG0686 COP9 signalosome, subu 63.2 2.4 5.2E-05 45.8 0.0 100 103-208 150-257 (466)
302 COG3898 Uncharacterized membra 62.5 4.5 9.7E-05 43.6 1.9 122 90-226 250-374 (531)
303 KOG4814 Uncharacterized conser 60.9 2.5 5.4E-05 48.0 -0.3 72 148-219 356-433 (872)
304 PF10516 SHNi-TPR: SHNi-TPR; 60.8 4.3 9.3E-05 29.1 1.0 32 104-135 2-33 (38)
305 PF13281 DUF4071: Domain of un 60.4 7.4 0.00016 42.1 3.1 107 104-215 142-261 (374)
306 KOG2300 Uncharacterized conser 59.4 4.1 8.9E-05 45.0 1.0 103 99-210 363-475 (629)
307 KOG2758 Translation initiation 57.5 41 0.0009 35.6 7.7 148 21-173 32-194 (432)
308 KOG3617 WD40 and TPR repeat-co 57.2 22 0.00047 42.0 6.1 83 104-208 913-995 (1416)
309 COG3947 Response regulator con 56.8 2.8 6E-05 43.6 -0.8 52 182-233 281-332 (361)
310 COG3629 DnrI DNA-binding trans 56.7 1.1 2.4E-05 46.4 -3.7 65 144-208 151-215 (280)
311 smart00727 STI1 Heat shock cha 56.5 11 0.00023 27.0 2.5 24 385-410 10-33 (41)
312 COG3914 Spy Predicted O-linked 55.3 6.8 0.00015 44.3 1.8 93 121-220 49-142 (620)
313 PF04910 Tcf25: Transcriptiona 54.8 7 0.00015 42.1 1.8 101 99-215 36-139 (360)
314 cd02682 MIT_AAA_Arch MIT: doma 54.0 9.2 0.0002 31.7 2.0 31 102-132 5-35 (75)
315 PF10255 Paf67: RNA polymerase 53.7 3.1 6.8E-05 45.4 -1.1 101 111-212 130-231 (404)
316 KOG2047 mRNA splicing factor [ 52.6 4.3 9.3E-05 46.3 -0.3 122 85-210 493-616 (835)
317 PF10373 EST1_DNA_bind: Est1 D 52.5 3.2 6.8E-05 42.2 -1.2 62 122-192 1-62 (278)
318 KOG1585 Protein required for f 50.8 14 0.00031 37.6 3.1 149 39-203 93-250 (308)
319 KOG0546 HSP90 co-chaperone CPR 50.7 2.8 6E-05 44.6 -2.0 82 104-194 276-357 (372)
320 KOG1550 Extracellular protein 50.6 10 0.00022 43.3 2.3 115 104-226 245-372 (552)
321 PF07720 TPR_3: Tetratricopept 50.0 12 0.00027 26.3 1.8 32 104-135 2-35 (36)
322 PF04910 Tcf25: Transcriptiona 49.6 3.7 8.1E-05 44.2 -1.3 106 99-212 99-225 (360)
323 PF06957 COPI_C: Coatomer (COP 49.5 2.6 5.7E-05 46.1 -2.5 114 101-215 202-335 (422)
324 KOG0985 Vesicle coat protein c 49.3 47 0.001 40.2 7.3 106 104-226 1195-1325(1666)
325 TIGR02561 HrpB1_HrpK type III 46.1 12 0.00025 35.3 1.5 72 158-229 22-93 (153)
326 PF08631 SPO22: Meiosis protei 45.9 3.7 8E-05 42.4 -2.0 104 113-217 3-124 (278)
327 PF04212 MIT: MIT (microtubule 45.4 13 0.00029 29.7 1.7 30 103-132 5-34 (69)
328 cd02681 MIT_calpain7_1 MIT: do 45.3 14 0.00031 30.6 1.8 31 103-133 6-36 (76)
329 COG4941 Predicted RNA polymera 45.2 19 0.00042 38.2 3.1 98 114-221 307-406 (415)
330 COG5191 Uncharacterized conser 45.0 11 0.00024 39.6 1.4 78 98-184 102-180 (435)
331 PRK15180 Vi polysaccharide bio 44.6 4.7 0.0001 44.4 -1.4 56 157-212 368-423 (831)
332 PRK09687 putative lyase; Provi 44.5 1.4E+02 0.0031 30.9 9.6 38 13-50 42-81 (280)
333 PF14863 Alkyl_sulf_dimr: Alky 43.7 17 0.00036 33.9 2.2 55 178-232 68-122 (141)
334 PF09986 DUF2225: Uncharacteri 43.5 4 8.8E-05 40.7 -2.0 71 102-175 124-194 (214)
335 PF12968 DUF3856: Domain of Un 42.9 2.4 5.2E-05 38.4 -3.3 71 103-173 55-127 (144)
336 cd02683 MIT_1 MIT: domain cont 42.3 16 0.00035 30.3 1.7 30 103-132 6-35 (77)
337 COG2909 MalT ATP-dependent tra 42.2 34 0.00074 40.6 4.8 109 102-210 414-527 (894)
338 COG3763 Uncharacterized protei 41.7 55 0.0012 26.7 4.5 33 493-525 26-60 (71)
339 KOG0529 Protein geranylgeranyl 41.6 8.3 0.00018 41.8 -0.1 103 118-229 90-198 (421)
340 PF08424 NRDE-2: NRDE-2, neces 41.5 7.4 0.00016 41.2 -0.6 61 162-222 47-107 (321)
341 TIGR03504 FimV_Cterm FimV C-te 41.0 16 0.00035 27.0 1.4 25 184-208 3-27 (44)
342 PF13646 HEAT_2: HEAT repeats; 41.0 40 0.00086 27.5 4.0 55 7-61 13-69 (88)
343 KOG2396 HAT (Half-A-TPR) repea 39.9 12 0.00026 41.6 0.7 74 102-184 104-178 (568)
344 KOG3915 Transcription regulato 39.6 76 0.0016 35.0 6.6 28 360-387 68-97 (641)
345 PF10255 Paf67: RNA polymerase 39.5 7.6 0.00017 42.4 -0.8 57 150-207 126-191 (404)
346 TIGR02561 HrpB1_HrpK type III 39.3 20 0.00044 33.8 2.0 83 105-196 12-94 (153)
347 KOG0985 Vesicle coat protein c 39.3 50 0.0011 40.1 5.5 57 147-208 1105-1161(1666)
348 cd02680 MIT_calpain7_2 MIT: do 37.6 22 0.00048 29.5 1.8 31 102-132 5-35 (75)
349 PF11304 DUF3106: Protein of u 36.2 81 0.0017 27.9 5.3 20 14-33 34-53 (107)
350 COG0790 FOG: TPR repeat, SEL1 36.0 19 0.00041 36.9 1.4 92 106-210 44-143 (292)
351 KOG2300 Uncharacterized conser 35.4 19 0.00041 40.0 1.4 124 80-205 20-152 (629)
352 PF11817 Foie-gras_1: Foie gra 35.1 7.5 0.00016 39.5 -1.6 66 103-171 178-243 (247)
353 cd02678 MIT_VPS4 MIT: domain c 35.0 25 0.00053 28.8 1.7 31 102-132 5-35 (75)
354 COG2976 Uncharacterized protei 34.8 7.2 0.00016 38.3 -1.7 90 150-241 93-186 (207)
355 KOG1920 IkappaB kinase complex 33.6 89 0.0019 38.5 6.5 21 187-207 959-979 (1265)
356 TIGR03798 ocin_TIGR03798 bacte 33.2 75 0.0016 25.1 4.2 54 484-543 8-61 (64)
357 KOG4459 Membrane-associated pr 32.9 23 0.0005 39.0 1.5 124 103-231 31-184 (471)
358 PF10579 Rapsyn_N: Rapsyn N-te 32.4 19 0.00041 30.2 0.6 50 156-205 16-68 (80)
359 smart00386 HAT HAT (Half-A-TPR 32.1 27 0.00058 22.4 1.3 29 194-222 1-29 (33)
360 COG4455 ImpE Protein of avirul 32.0 22 0.00048 35.7 1.1 67 156-222 11-77 (273)
361 KOG2047 mRNA splicing factor [ 31.6 10 0.00023 43.3 -1.3 90 114-212 488-582 (835)
362 PRK15180 Vi polysaccharide bio 31.5 24 0.00052 39.2 1.4 95 113-216 299-393 (831)
363 COG3947 Response regulator con 31.1 40 0.00087 35.3 2.8 59 148-206 281-339 (361)
364 cd02684 MIT_2 MIT: domain cont 30.8 31 0.00067 28.4 1.6 31 102-132 5-35 (75)
365 PF11207 DUF2989: Protein of u 30.6 19 0.00041 35.6 0.4 62 98-165 136-197 (203)
366 smart00745 MIT Microtubule Int 30.6 31 0.00068 28.0 1.7 30 103-132 8-37 (77)
367 PF13281 DUF4071: Domain of un 30.5 20 0.00044 38.8 0.6 83 148-230 143-233 (374)
368 KOG2041 WD40 repeat protein [G 30.3 17 0.00037 41.9 0.1 81 102-203 795-875 (1189)
369 cd02656 MIT MIT: domain contai 30.0 33 0.00072 27.9 1.7 30 103-132 6-35 (75)
370 KOG3617 WD40 and TPR repeat-co 30.0 67 0.0015 38.2 4.6 27 180-206 912-938 (1416)
371 KOG0529 Protein geranylgeranyl 29.5 24 0.00053 38.4 1.0 108 114-230 39-161 (421)
372 KOG0010 Ubiquitin-like protein 29.4 1.7E+02 0.0036 32.8 7.3 25 484-511 347-371 (493)
373 KOG1924 RhoA GTPase effector D 29.1 3.2E+02 0.0069 32.6 9.6 16 116-131 378-393 (1102)
374 COG3629 DnrI DNA-binding trans 29.0 28 0.00061 36.2 1.3 62 178-239 151-212 (280)
375 KOG1839 Uncharacterized protei 28.9 11 0.00024 46.3 -1.9 111 99-210 969-1087(1236)
376 COG3118 Thioredoxin domain-con 28.7 31 0.00067 36.1 1.5 56 151-206 139-194 (304)
377 KOG2114 Vacuolar assembly/sort 28.4 33 0.00071 40.5 1.8 50 484-534 699-748 (933)
378 PF11212 DUF2999: Protein of u 28.2 1.2E+02 0.0025 25.0 4.3 27 21-47 41-67 (82)
379 PF07023 DUF1315: Protein of u 27.0 70 0.0015 27.7 3.1 34 498-531 2-42 (93)
380 KOG1538 Uncharacterized conser 26.6 1.7E+02 0.0038 33.9 6.9 84 105-208 749-832 (1081)
381 TIGR03042 PS_II_psbQ_bact phot 26.4 1.4E+02 0.003 27.9 5.3 13 20-32 29-41 (142)
382 PF04781 DUF627: Protein of un 25.8 18 0.00038 32.3 -0.7 63 152-214 2-78 (111)
383 COG4649 Uncharacterized protei 25.0 2.7E+02 0.0058 27.3 7.0 101 103-208 94-195 (221)
384 KOG3616 Selective LIM binding 24.9 56 0.0012 38.2 2.8 59 148-206 767-850 (1636)
385 PF14863 Alkyl_sulf_dimr: Alky 24.6 12 0.00027 34.8 -2.0 49 150-198 74-122 (141)
386 PF07079 DUF1347: Protein of u 24.4 22 0.00048 39.3 -0.4 60 103-172 462-521 (549)
387 PF10345 Cohesin_load: Cohesin 23.9 19 0.00041 41.6 -1.1 122 102-227 58-188 (608)
388 PRK13184 pknD serine/threonine 23.7 48 0.001 40.3 2.1 89 116-216 532-627 (932)
389 cd02677 MIT_SNX15 MIT: domain 23.7 46 0.001 27.5 1.4 30 103-132 6-35 (75)
390 PF04348 LppC: LppC putative l 23.5 27 0.00058 39.8 0.0 102 102-211 23-129 (536)
391 cd02682 MIT_AAA_Arch MIT: doma 23.0 61 0.0013 26.9 2.0 23 196-218 29-51 (75)
392 KOG2581 26S proteasome regulat 22.9 46 0.001 36.3 1.6 64 151-214 214-281 (493)
393 PF10602 RPN7: 26S proteasome 22.3 14 0.00031 35.6 -2.2 63 148-210 38-103 (177)
394 KOG3807 Predicted membrane pro 22.2 28 0.0006 37.0 -0.2 51 149-199 278-330 (556)
395 PF12854 PPR_1: PPR repeat 21.5 56 0.0012 22.3 1.3 27 179-205 6-32 (34)
396 PF08424 NRDE-2: NRDE-2, neces 20.9 24 0.00053 37.3 -1.0 58 119-185 47-104 (321)
397 cd02679 MIT_spastin MIT: domai 20.8 80 0.0017 26.4 2.3 33 102-134 7-39 (79)
398 KOG1463 26S proteasome regulat 20.5 38 0.00083 36.1 0.4 119 107-229 213-333 (411)
399 PRK11619 lytic murein transgly 20.3 2.4E+02 0.0052 33.0 6.9 53 156-208 322-374 (644)
No 1
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=2.2e-21 Score=195.30 Aligned_cols=122 Identities=28% Similarity=0.370 Sum_probs=116.2
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~ 178 (594)
....++.++.+||.+.+.++|.+|+.+|++||+++|.++ .+|.||+++|.++|.|+.|+++|+.||.+||.
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA---------VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ 147 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA---------VYYCNRAAAYSKLGEYEDAVKDCESALSIDPH 147 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc---------hHHHHHHHHHHHhcchHHHHHHHHHHHhcChH
Confidence 445688999999999999999999999999999999994 58999999999999999999999999999999
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
+.++|.|+|.+|+.+|+|++|++.|++||+++|++...+..|+.++.++.+
T Consensus 148 yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 148 YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999888754
No 2
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=7.8e-17 Score=168.43 Aligned_cols=134 Identities=37% Similarity=0.542 Sum_probs=122.0
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccc------cccceeeeeecccCceeeeccccchhhhhhccee
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEV 172 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~------~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~A 172 (594)
....+...+..||.+|+.|+|..|+..|++++........ .....++..||+|++.||+++++|.+|+..|+++
T Consensus 204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv 283 (397)
T KOG0543|consen 204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV 283 (397)
T ss_pred HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 5566788999999999999999999999999987764432 2356677889999999999999999999999999
Q ss_pred eeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007653 173 LAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 232 (594)
Q Consensus 173 L~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~ 232 (594)
|+++|+|++++||||.||..+++|+.|+.+|+++++++|.|..+...|..+..+++.+..
T Consensus 284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~ 343 (397)
T KOG0543|consen 284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEE 343 (397)
T ss_pred HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887653
No 3
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=8.8e-16 Score=146.41 Aligned_cols=126 Identities=24% Similarity=0.350 Sum_probs=114.7
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~ 178 (594)
....+..++..||.+|+.|+|.+|...|.+||+++|..+. +++..||.|+|.|+++++.++.||.+|.++|+|+|.
T Consensus 91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~----e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt 166 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST----EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT 166 (271)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH----HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch
Confidence 4556788999999999999999999999999999998753 456779999999999999999999999999999999
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (594)
Q Consensus 179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~ 228 (594)
+.+++.||+.+|..+.+|++|+.+|.+.++++|....++..+.++-..+.
T Consensus 167 y~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ 216 (271)
T KOG4234|consen 167 YEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKIN 216 (271)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHH
Confidence 99999999999999999999999999999999998887777776655554
No 4
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=5.5e-15 Score=158.29 Aligned_cols=133 Identities=23% Similarity=0.352 Sum_probs=122.3
Q ss_pred HHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhh
Q 007653 86 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 165 (594)
Q Consensus 86 ~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eA 165 (594)
+.+..+.......+++.++..+..||.+|+.|+|..|+.+|+++|..+|.++ .+|.|||.||.+++.|..|
T Consensus 341 Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da---------~lYsNRAac~~kL~~~~~a 411 (539)
T KOG0548|consen 341 EKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA---------RLYSNRAACYLKLGEYPEA 411 (539)
T ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh---------HHHHHHHHHHHHHhhHHHH
Confidence 3444445555556788899999999999999999999999999999999995 4999999999999999999
Q ss_pred hhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653 166 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (594)
Q Consensus 166 i~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l 227 (594)
+.+|..+|+++|++.++|+|.|.|+..+.+|++|++.|++++++||++.++...+.+|...+
T Consensus 412 L~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 412 LKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999998876
No 5
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.7e-14 Score=150.32 Aligned_cols=128 Identities=24% Similarity=0.269 Sum_probs=119.1
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~ 178 (594)
.++..+.++..||.+|+.|+|.+|.++|+++|.++|... ..++.+|.|||.++.++|+.++||.+|+.|++|||.
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~-----~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s 319 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK-----KTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS 319 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc-----chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH
Confidence 566778899999999999999999999999999999874 345779999999999999999999999999999999
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007653 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 232 (594)
Q Consensus 179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~ 232 (594)
+.++|.+||.||..+++|++|++||++|++++-+ .+++..+++++..|++.++
T Consensus 320 yikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkR 372 (486)
T KOG0550|consen 320 YIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKR 372 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999877 8899999999999987664
No 6
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=3.2e-14 Score=144.78 Aligned_cols=161 Identities=17% Similarity=0.194 Sum_probs=126.3
Q ss_pred CcchHHHHHHHHhcChhHHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhhcCChHHHHHHHHhhhhcccccch
Q 007653 22 SPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFN 101 (594)
Q Consensus 22 ~p~~l~r~~~~m~~~p~l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~~~~~~el~aa~~~~~a~~~~~~~ 101 (594)
.+....+|+..|.+.|-+|..+-+--+. ..-....+.|... +.... -.+
T Consensus 31 k~~~~Dew~kEm~k~PfFMt~~p~~gd~---~~~~~~LqslK~d-----------a~E~e-----------------p~E 79 (390)
T KOG0551|consen 31 KGFHEDEWEKEMNKVPFFMTRAPSEGDP---NPDNVCLQSLKAD-----------AEEGE-----------------PHE 79 (390)
T ss_pred CCCCHHHHHHHHhcCcHHHhcCCCCCCC---CccHHHHHHhhhc-----------cccCC-----------------hHH
Confidence 4566788999999999999887663222 1111111111110 00011 123
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchH
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 181 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k 181 (594)
.++.++..||.||+.++|..|+.+|+++|.....+++ +++.+|.||++|.+.+|+|..||.+|.+|+.++|++.+
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~d-----lnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~K 154 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPD-----LNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLK 154 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCcc-----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 5778999999999999999999999999998877764 56889999999999999999999999999999999999
Q ss_pred HHHHhccchhhhhhHHHHhhhcccccccCCCCChHHH
Q 007653 182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD 218 (594)
Q Consensus 182 a~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~ 218 (594)
+|||-+.|++.+.++++|+.+++..+.++-+...+..
T Consensus 155 a~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~ 191 (390)
T KOG0551|consen 155 AYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAIE 191 (390)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 9999999999999999999999999888755444433
No 7
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.45 E-value=1.3e-14 Score=135.36 Aligned_cols=114 Identities=18% Similarity=0.258 Sum_probs=107.9
Q ss_pred HHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHH
Q 007653 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR 185 (594)
Q Consensus 106 l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~ 185 (594)
+...|..++..|+|++|+.+|.+++.++|.+.. +|.++|.++.++|+|++|+..|.++++++|+++.++++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~ 97 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWR---------AHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQ 97 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 556799999999999999999999999999854 89999999999999999999999999999999999999
Q ss_pred hccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653 186 RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (594)
Q Consensus 186 rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~ 228 (594)
+|.+|..+|++++|+..|+++++++|+++..+..++.++..+.
T Consensus 98 lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 98 TGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988877654
No 8
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.9e-14 Score=141.05 Aligned_cols=162 Identities=28% Similarity=0.367 Sum_probs=136.5
Q ss_pred CCchhhhhhhhhcCCChhHHHHHHHHhhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhh
Q 007653 51 RPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAK 130 (594)
Q Consensus 51 ~pe~~~~a~e~l~~~~pee~~~~~~~~~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL 130 (594)
.|..+.++++.++-..|+++... .|+++.++ .......+...||.+|+.|+|++|+.+|.+||
T Consensus 143 nPqpL~FviellqVe~P~qYq~e---~Wqlsdde--------------Kmkav~~l~q~GN~lfk~~~ykEA~~~YreAi 205 (329)
T KOG0545|consen 143 NPQPLVFVIELLQVEAPSQYQRE---TWQLSDDE--------------KMKAVPVLHQEGNRLFKLGRYKEASSKYREAI 205 (329)
T ss_pred CCCceEeehhhhhccCchhhccc---cccCCchH--------------hhhhhHHHHHhhhhhhhhccHHHHHHHHHHHH
Confidence 37778889999999999887764 58877777 66678899999999999999999999999998
Q ss_pred hcccc--------ccc-cccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhh
Q 007653 131 KNLQG--------IHS-SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS 201 (594)
Q Consensus 131 ~l~p~--------~~~-~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~ 201 (594)
-...+ .++ .+......+++.|.+.|++..++|.++++.|..+|+.+|+|.+|||+||.|+...-+.++|..
T Consensus 206 ~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~ 285 (329)
T KOG0545|consen 206 ICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKA 285 (329)
T ss_pred HHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHH
Confidence 75432 221 234555678999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccCCCCC-hHHHHHhHHHHHhhh
Q 007653 202 DLSNAHEVSPDDG-TIADVLRDAKEILMK 229 (594)
Q Consensus 202 ~lekAl~l~P~~~-~a~~~l~~a~~~l~~ 229 (594)
||.++|+++|.-. .+...+..+..++.+
T Consensus 286 D~~~vL~ldpslasvVsrElr~le~r~~e 314 (329)
T KOG0545|consen 286 DLQKVLELDPSLASVVSRELRLLENRMAE 314 (329)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHHH
Confidence 9999999999864 455666666655543
No 9
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.41 E-value=4.8e-14 Score=143.69 Aligned_cols=115 Identities=24% Similarity=0.329 Sum_probs=106.2
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch
Q 007653 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180 (594)
Q Consensus 101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ 180 (594)
.....++.+||.||++|+|++||.||.+++...|.++ ..|.||+.+|+++++|..|..+|+.||.||-.+.
T Consensus 95 ~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~Np---------V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~ 165 (536)
T KOG4648|consen 95 KKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNP---------VYHINRALAYLKQKSFAQAEEDCEAAIALDKLYV 165 (536)
T ss_pred HhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCc---------cchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHH
Confidence 3344589999999999999999999999999999885 4899999999999999999999999999999999
Q ss_pred HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHH
Q 007653 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK 224 (594)
Q Consensus 181 ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~ 224 (594)
++|.||+.+...+|...||.++|+.+|++.|++.++...+..+.
T Consensus 166 KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~ 209 (536)
T KOG4648|consen 166 KAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARIN 209 (536)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence 99999999999999999999999999999999887777666653
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.39 E-value=1.1e-13 Score=149.52 Aligned_cols=158 Identities=19% Similarity=0.121 Sum_probs=137.7
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~ 163 (594)
++-.+...|...+...+.-+.+|.++||+|-..+.|++|+.+|.+|+.+.|.. +.+|-|+|-+|+.+|..+
T Consensus 233 ei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~---------A~a~gNla~iYyeqG~ld 303 (966)
T KOG4626|consen 233 EIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH---------AVAHGNLACIYYEQGLLD 303 (966)
T ss_pred hHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc---------hhhccceEEEEeccccHH
Confidence 34456677888888899999999999999999999999999999999999998 458999999999999999
Q ss_pred hhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchHHH
Q 007653 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEE 243 (594)
Q Consensus 164 eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~iee 243 (594)
-||..|+++|+++|+++.+|.++|.++...|+..||+.+|.+||.+.|+++++..+|+.++...+.-+.+..-+.+.+ +
T Consensus 304 lAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al-~ 382 (966)
T KOG4626|consen 304 LAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKAL-E 382 (966)
T ss_pred HHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHH-h
Confidence 999999999999999999999999999999999999999999999999999999999999888777666554444444 3
Q ss_pred HHHhhccc
Q 007653 244 ITEEVGAV 251 (594)
Q Consensus 244 ~~e~~~~~ 251 (594)
+.++..+.
T Consensus 383 v~p~~aaa 390 (966)
T KOG4626|consen 383 VFPEFAAA 390 (966)
T ss_pred hChhhhhh
Confidence 44444433
No 11
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.39 E-value=6.9e-14 Score=149.40 Aligned_cols=117 Identities=17% Similarity=0.295 Sum_probs=111.6
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHH
Q 007653 105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY 184 (594)
Q Consensus 105 ~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~ 184 (594)
.++..|+.++..|+|.+|+.+|.++|+++|.++. +|+++|.||+++|+|++|+.+|+++|.++|+++.+|+
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~---------a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~ 74 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAE---------LYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYL 74 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHH
Confidence 4788899999999999999999999999999854 8999999999999999999999999999999999999
Q ss_pred HhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007653 185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 230 (594)
Q Consensus 185 ~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~ 230 (594)
++|.+|..+|+|++|+.+|++++.++|++..++..+..|..++...
T Consensus 75 ~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 75 RKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120 (356)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999888653
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.37 E-value=6.4e-14 Score=151.34 Aligned_cols=128 Identities=16% Similarity=0.121 Sum_probs=65.8
Q ss_pred hhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcce
Q 007653 92 IDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE 171 (594)
Q Consensus 92 ~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~ 171 (594)
|.+.++..+.-+.++.++|.+|-++|++++|+.+|+++|++.|.+.+ +|.|+|.+|-.+|+...|+.+|++
T Consensus 377 y~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd---------a~~NmGnt~ke~g~v~~A~q~y~r 447 (966)
T KOG4626|consen 377 YLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD---------ALSNMGNTYKEMGDVSAAIQCYTR 447 (966)
T ss_pred HHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH---------HHHhcchHHHHhhhHHHHHHHHHH
Confidence 33334444444444444444445555555555555555555554422 455555555555555555555555
Q ss_pred eeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653 172 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (594)
Q Consensus 172 AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~ 228 (594)
||.++|..++++.++|.+|...|+..+||..|+.||+++|+.+++..++..+..-+.
T Consensus 448 AI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vc 504 (966)
T KOG4626|consen 448 AIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVC 504 (966)
T ss_pred HHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHh
Confidence 555555555555555555555555555555555555555555555555555544443
No 13
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=2e-13 Score=144.60 Aligned_cols=99 Identities=24% Similarity=0.416 Sum_probs=93.1
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~ 178 (594)
..+.+..++++||.+|+.|+|++||.+|++||+++|+.| ..|.||+.||..+|+|++.+++|+++|+++|+
T Consensus 111 ~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~ep---------iFYsNraAcY~~lgd~~~Vied~TkALEl~P~ 181 (606)
T KOG0547|consen 111 RLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEP---------IFYSNRAACYESLGDWEKVIEDCTKALELNPD 181 (606)
T ss_pred HHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCc---------hhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH
Confidence 356678999999999999999999999999999999975 48999999999999999999999999999999
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccc
Q 007653 179 NVKALYRRGQAYKDIGRLEEAVSDLSNA 206 (594)
Q Consensus 179 ~~ka~~~rg~al~~lg~~~eAi~~lekA 206 (594)
+.++++||+.+|-.+|++++|+.|+.-.
T Consensus 182 Y~KAl~RRA~A~E~lg~~~eal~D~tv~ 209 (606)
T KOG0547|consen 182 YVKALLRRASAHEQLGKFDEALFDVTVL 209 (606)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHhhhHH
Confidence 9999999999999999999999998743
No 14
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=2.2e-13 Score=146.18 Aligned_cols=112 Identities=23% Similarity=0.298 Sum_probs=107.9
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHH
Q 007653 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL 183 (594)
Q Consensus 104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~ 183 (594)
..++.+||.+|..|+|+.|+.+|+++|.++|.+ ..+|.||..||..+++|.+|+.+..+.++++|+++++|
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~n---------hvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy 73 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTN---------HVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGY 73 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCc---------cchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHH
Confidence 467899999999999999999999999999997 45899999999999999999999999999999999999
Q ss_pred HHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHH
Q 007653 184 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK 224 (594)
Q Consensus 184 ~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~ 224 (594)
+++|.++..+|+|++|+..|.+.|+++|+|..+...|..+.
T Consensus 74 ~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 74 SRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 99999999999999999999999999999999999999887
No 15
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.33 E-value=4.4e-13 Score=137.27 Aligned_cols=241 Identities=19% Similarity=0.176 Sum_probs=150.2
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~ 178 (594)
..+.+.-.+..+..++..|.+++||++|..+|.++|.. ..+|.+|+.+|+++++...||.+|..||+++|+
T Consensus 110 ~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~---------a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D 180 (377)
T KOG1308|consen 110 MMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPL---------AILYAKRASVFLKLKKPNAAIRDCDFAIEINPD 180 (377)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCch---------hhhcccccceeeeccCCchhhhhhhhhhccCcc
Confidence 44455667777788899999999999999999999998 458999999999999999999999999999999
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchHHHHH--Hhhcc-cccCC
Q 007653 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEIT--EEVGA-VSSGS 255 (594)
Q Consensus 179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~iee~~--e~~~~-~~~~~ 255 (594)
.++.|-.||.++..+|+|++|..+|+.+++++-+ ..+-..+.++....+..++....+....++.. +..+. .....
T Consensus 181 sa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~er~~~e~~~~~r~er~r~~r~ 259 (377)
T KOG1308|consen 181 SAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD-EANSATLKEVFPNAGKIEEHRRKYERAREEREIKERVERVRYARE 259 (377)
T ss_pred cccccchhhHHHHHhhchHHHHHHHHHHHhcccc-HHHHHHHHHhccchhhhhhchhHHHHHHHHhcccccccccccccc
Confidence 9999999999999999999999999999998754 23333333332222211111000000000000 00000 00000
Q ss_pred cCCc-chhhhhhhcCCCCCcccccCCCCCCCCCCCCC----------CCCCChH------hHHHHHhhhhccCCcchhhc
Q 007653 256 HRSS-GTEYLAREKADPSKSEHSANGRGSSTKPEFLP----------DLKDDPE------SIRSFQNFISNANPDSFAAL 318 (594)
Q Consensus 256 ~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~----------~l~~~Pe------~~~~~~~~i~~~dpe~l~~m 318 (594)
.... ..+... ..........+.++.++..++..+ ....++- .+= +.++++ |||.+++|
T Consensus 260 ~~e~~~~e~~k--~~~~~~~~~~~~g~~p~~M~g~~~~~~~m~~~m~~~~~n~~~~~~p~~~g-i~ki~~--dpev~aAf 334 (377)
T KOG1308|consen 260 PEEMANPEEFK--RMLKNPQYRQFLGGFPGGMPGSFPGDKRMTDGMKGFDGNSPVKQQPNQIG-ISKILS--DPEVAAAF 334 (377)
T ss_pred hhhhcChhhhh--hhhccCCCCcccCCCcccCCCCCCCccccccccccCCCCCccccCCCccc-HhhhcC--chHHHHhh
Confidence 0000 000000 000111112222222222222211 1111111 111 333333 78888888
Q ss_pred cCCccccCCchhhhHHHHhhcCCCHHHHHHHHHHhh
Q 007653 319 SGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIAS 354 (594)
Q Consensus 319 ~~~~~~~~~pdm~K~a~~m~~~mspeel~~m~~~as 354 (594)
+.+...-.-+|.+|...+|+++-+..++-.++.+-+
T Consensus 335 qdp~v~aal~d~~~np~n~~kyq~n~kv~~~i~kl~ 370 (377)
T KOG1308|consen 335 QDPEVQAALMDVSQNPANMMKYQNNPKVMDVISKLS 370 (377)
T ss_pred cChHHHhhhhhcccChHHHHHhccChHHHHHHHHHH
Confidence 777777778899999999999999999999988644
No 16
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=6.3e-13 Score=145.66 Aligned_cols=176 Identities=15% Similarity=0.141 Sum_probs=145.7
Q ss_pred cCCCchhhhhhhhhcCCChhHHHHH---HHHhhcCChHH-HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHH
Q 007653 49 NMRPEDLKCAAEQLTHTPPEEVAEI---GEKLANASPEE-IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQ 124 (594)
Q Consensus 49 ~~~pe~~~~a~e~l~~~~pee~~~~---~~~~~~~~~~e-l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~ 124 (594)
-...++.+.+++.++...|-.++.+ ..-+|.+..+- +..+-+ .-....+..++.|...||++.-+++++.||+
T Consensus 366 l~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq---~Li~~~~~sPesWca~GNcfSLQkdh~~Aik 442 (638)
T KOG1126|consen 366 LIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ---DLIDTDPNSPESWCALGNCFSLQKDHDTAIK 442 (638)
T ss_pred HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH---HHHhhCCCCcHHHHHhcchhhhhhHHHHHHH
Confidence 3445666677777777666544443 33366664432 222223 3334577788899999999999999999999
Q ss_pred HHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcc
Q 007653 125 KYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLS 204 (594)
Q Consensus 125 ~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~le 204 (594)
+|++||+++|++ .++|.-+|.=+....+|+.|..+|+.||.++|++..|||-+|.+|.++++++.|.-+|+
T Consensus 443 ~f~RAiQldp~f---------aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fq 513 (638)
T KOG1126|consen 443 CFKRAIQLDPRF---------AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQ 513 (638)
T ss_pred HHHHhhccCCcc---------chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHH
Confidence 999999999999 67999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCChHHHHHhHHHHHhhhccCCCCC
Q 007653 205 NAHEVSPDDGTIADVLRDAKEILMKEDGHHGP 236 (594)
Q Consensus 205 kAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~ 236 (594)
+|+.++|.+..+...++.++.++++.+.+..-
T Consensus 514 kA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~ 545 (638)
T KOG1126|consen 514 KAVEINPSNSVILCHIGRIQHQLKRKDKALQL 545 (638)
T ss_pred hhhcCCccchhHHhhhhHHHHHhhhhhHHHHH
Confidence 99999999999999999999999877655433
No 17
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.30 E-value=5.6e-13 Score=121.42 Aligned_cols=126 Identities=18% Similarity=0.288 Sum_probs=113.8
Q ss_pred hhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhccee
Q 007653 93 DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEV 172 (594)
Q Consensus 93 ~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~A 172 (594)
+..+...++....+..+|..++..|+|.+|+..|++++.++|.++. +|.++|.||++.++|.+|+..|.++
T Consensus 7 ~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---------~~~~la~~~~~~~~~~~A~~~~~~~ 77 (135)
T TIGR02552 7 KDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSR---------YWLGLAACCQMLKEYEEAIDAYALA 77 (135)
T ss_pred HHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666788999999999999999999999999999998854 8999999999999999999999999
Q ss_pred eeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653 173 LAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (594)
Q Consensus 173 L~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l 227 (594)
++++|+++..++++|.+|...|++++|+..|+++++++|++.........+...+
T Consensus 78 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 78 AALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988777777665554
No 18
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=1.5e-12 Score=131.72 Aligned_cols=88 Identities=25% Similarity=0.275 Sum_probs=77.9
Q ss_pred cCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007653 151 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 230 (594)
Q Consensus 151 N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~ 230 (594)
+-|.-+++-++|.+|+..|++||+++|+|+.+|++|+.||.+||+|+.||++|+.|+.+||.+.++|.+|+.++..++++
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 45556778899999999999999999999999999999999999999999999999999999999999999998877655
Q ss_pred cCCCCCcc
Q 007653 231 DGHHGPRG 238 (594)
Q Consensus 231 ~~a~~~~~ 238 (594)
..+...|+
T Consensus 166 ~~A~~ayk 173 (304)
T KOG0553|consen 166 EEAIEAYK 173 (304)
T ss_pred HHHHHHHH
Confidence 44443333
No 19
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.27 E-value=1.3e-12 Score=128.46 Aligned_cols=130 Identities=12% Similarity=0.048 Sum_probs=116.0
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceee-ecccc
Q 007653 83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY-LKTKQ 161 (594)
Q Consensus 83 ~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~-~klg~ 161 (594)
++.+.+...++..++.+++.++.|..+|..+...|+|++|+.+|.+++++.|+++. ++.++|.|+ +..|+
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~---------~~~~lA~aL~~~~g~ 123 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAE---------LYAALATVLYYQAGQ 123 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHhcCC
Confidence 34556667778888889999999999999999999999999999999999999855 889999985 67787
Q ss_pred --chhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHh
Q 007653 162 --YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 221 (594)
Q Consensus 162 --y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~ 221 (594)
+++|+..++++++++|+++.+++++|.++..+|+|++|+.+|+++++++|.+..-...++
T Consensus 124 ~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~ 185 (198)
T PRK10370 124 HMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVE 185 (198)
T ss_pred CCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 599999999999999999999999999999999999999999999999998765444443
No 20
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.20 E-value=8.6e-11 Score=120.31 Aligned_cols=114 Identities=22% Similarity=0.274 Sum_probs=97.0
Q ss_pred ccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhh
Q 007653 113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD 192 (594)
Q Consensus 113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~ 192 (594)
....++|.++++.++++++.+|..+ .+....+.-++.||..-+++.+||+.|.++|.++|+++.+++.|+.+|..
T Consensus 279 ~ie~~~~t~cle~ge~vlk~ep~~~-----~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLKNEPEET-----MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG 353 (504)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCccc-----ceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 4556666666666666666666643 23445566689999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653 193 IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 231 (594)
Q Consensus 193 lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~ 231 (594)
-..|++||.+|++|++++++|..++..+..++...++..
T Consensus 354 dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~ 392 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSG 392 (504)
T ss_pred hHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999988777654
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.19 E-value=3e-12 Score=146.24 Aligned_cols=146 Identities=9% Similarity=0.001 Sum_probs=114.1
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~ 163 (594)
+++.+...+...+...+.....+..+|.+++..|+|++|+.+|.++++++|.++. +|+++|.+|+.+|+|+
T Consensus 346 ~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~ 416 (615)
T TIGR00990 346 KHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD---------IYYHRAQLHFIKGEFA 416 (615)
T ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHH
Confidence 3445666677777777777778888888888888888888888888888777744 7788888888888888
Q ss_pred hhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCcc
Q 007653 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG 238 (594)
Q Consensus 164 eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~ 238 (594)
+|+.+|+++++++|++..+++.+|.+|..+|++++|+..|++++.+.|+++.++..++.+....++...+...+.
T Consensus 417 ~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~ 491 (615)
T TIGR00990 417 QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFD 491 (615)
T ss_pred HHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888887777666554443333
No 22
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.17 E-value=4.6e-12 Score=118.52 Aligned_cols=106 Identities=12% Similarity=0.108 Sum_probs=98.4
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch
Q 007653 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180 (594)
Q Consensus 101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ 180 (594)
+..+.++..|..++..|+|++|+..|+-...++|.+.. .|+|+|.|+..+|+|.+||..|.+|+.++|+++
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~---------y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp 103 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFD---------YWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP 103 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 44667899999999999999999999999999999954 899999999999999999999999999999999
Q ss_pred HHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215 (594)
Q Consensus 181 ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~ 215 (594)
.++++.|.||+.+|+.+.|++.|+.|+.+.-.+++
T Consensus 104 ~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 104 QAPWAAAECYLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChh
Confidence 99999999999999999999999999998744433
No 23
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.17 E-value=1.3e-11 Score=131.71 Aligned_cols=120 Identities=23% Similarity=0.330 Sum_probs=114.5
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka 182 (594)
++.++++++.+++.+.|+.|+..|.+||+++|+. +..|.||+.+|++.++|..|+.++.+||+++|.+.++
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnc---------a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~ 74 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNC---------AIYFANRALAHLKVESFGGALHDALKAIELDPTYIKA 74 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcc---------eeeechhhhhheeechhhhHHHHHHhhhhcCchhhhe
Confidence 5678999999999999999999999999999998 5589999999999999999999999999999999999
Q ss_pred HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653 183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 231 (594)
Q Consensus 183 ~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~ 231 (594)
|+++|.++..++++.+|+.+|++...+.|+++.+...+.+|...+.+++
T Consensus 75 Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~ 123 (476)
T KOG0376|consen 75 YVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK 123 (476)
T ss_pred eeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988887643
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.15 E-value=8.5e-12 Score=148.06 Aligned_cols=138 Identities=4% Similarity=-0.074 Sum_probs=120.1
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~ 163 (594)
+++.+...++..+...+. +..+.++|.++.+.|++++|+..|.+++.++|.++. ++.|+|.++...|+++
T Consensus 591 r~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~---------a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 591 QPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN---------YQAALGYALWDSGDIA 660 (987)
T ss_pred CHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHH
Confidence 455666777777777776 888999999999999999999999999999999854 8899999999999999
Q ss_pred hhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 231 (594)
Q Consensus 164 eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~ 231 (594)
+|+..|+++++++|+++.+++++|.+|..+|++++|+.+|+++++++|++..+...++.+..+....+
T Consensus 661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~ 728 (987)
T PRK09782 661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFR 728 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888877777665554433
No 25
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=1.3e-11 Score=128.54 Aligned_cols=106 Identities=21% Similarity=0.107 Sum_probs=101.1
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch
Q 007653 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180 (594)
Q Consensus 101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ 180 (594)
..+..+..+|..+...|++.+|+..|+++++++|.++. +|+++|.+|...|+|++|+..|+++|+++|++.
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~ 132 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMAD---------AYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 132 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 44778999999999999999999999999999999854 899999999999999999999999999999999
Q ss_pred HHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215 (594)
Q Consensus 181 ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~ 215 (594)
.+|+++|.+|...|++++|+.+|+++++++|+++.
T Consensus 133 ~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 133 YAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999999999999999873
No 26
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.14 E-value=6.9e-12 Score=143.32 Aligned_cols=144 Identities=13% Similarity=0.046 Sum_probs=126.2
Q ss_pred HHHHHHhhhhcccc---cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecccc
Q 007653 85 IATMRARIDAQMNY---EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ 161 (594)
Q Consensus 85 l~aa~~~~~a~~~~---~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~ 161 (594)
++.+...+...+.. .+..+..+..+|.+++..|+|++|+..|.++++++|.+.. +|+++|.+|..+|+
T Consensus 310 y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~---------~~~~la~~~~~~g~ 380 (615)
T TIGR00990 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQ---------SYIKRASMNLELGD 380 (615)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH---------HHHHHHHHHHHCCC
Confidence 44455555555543 4677889999999999999999999999999999998843 78999999999999
Q ss_pred chhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCc
Q 007653 162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPR 237 (594)
Q Consensus 162 y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~ 237 (594)
|++|+.+|+++|+++|+++.+|+.+|.+|..+|+|++|+.+|++++.++|++..++..++.+...++++..+....
T Consensus 381 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~ 456 (615)
T TIGR00990 381 PDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATF 456 (615)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999888877665544333
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.14 E-value=2e-11 Score=144.85 Aligned_cols=184 Identities=13% Similarity=0.062 Sum_probs=139.6
Q ss_pred ccCCCchhhhhhhhhcCCChhHHHHHHHHhhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHH
Q 007653 48 KNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYL 127 (594)
Q Consensus 48 k~~~pe~~~~a~e~l~~~~pee~~~~~~~~~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~ 127 (594)
...+.++....++.+...+|........-.......++.++...+++.+...+.....+..++..+...|+|++|+..|.
T Consensus 521 ~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~ 600 (987)
T PRK09782 521 QVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLT 600 (987)
T ss_pred HCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 44455555555555544333321111110111223344556666666666666656666666666667799999999999
Q ss_pred HhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhccccc
Q 007653 128 LAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAH 207 (594)
Q Consensus 128 kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl 207 (594)
++++++|. +. +|+++|.++.++|++++|+..|++++.++|+++.+++++|.+|...|++++|+..|++++
T Consensus 601 ~AL~l~P~-~~---------a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 601 RSLNIAPS-AN---------AYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHhCCC-HH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999996 43 789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653 208 EVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (594)
Q Consensus 208 ~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i 241 (594)
+++|+++.++..++.+...+++...+...++..+
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999999888766555444444
No 28
>PRK12370 invasion protein regulator; Provisional
Probab=99.10 E-value=3.2e-11 Score=136.28 Aligned_cols=139 Identities=9% Similarity=-0.037 Sum_probs=98.9
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~ 163 (594)
++..+...+++.+...++.+.++..+|..+...|+|++|+.+|+++++++|+++. +|+++|.+|...|+++
T Consensus 319 ~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~---------a~~~lg~~l~~~G~~~ 389 (553)
T PRK12370 319 AMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISAD---------IKYYYGWNLFMAGQLE 389 (553)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHH
Confidence 4556666667777777777777777777777777777777777777777777643 6677777777777777
Q ss_pred hhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccC-CCCChHHHHHhHHHHHhhhcc
Q 007653 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS-PDDGTIADVLRDAKEILMKED 231 (594)
Q Consensus 164 eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~-P~~~~a~~~l~~a~~~l~~~~ 231 (594)
+|+..|+++++++|.++.+++.++.+++..|+|++|+..+++++... |+++.++..++.+...+++.+
T Consensus 390 eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~ 458 (553)
T PRK12370 390 EALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHE 458 (553)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHH
Confidence 77777777777777777666666666666777777777777777664 566666666776665555444
No 29
>PRK12370 invasion protein regulator; Provisional
Probab=99.06 E-value=3.5e-11 Score=135.92 Aligned_cols=140 Identities=10% Similarity=-0.037 Sum_probs=120.9
Q ss_pred cCChHHHHHHHHhhhhcccccchHHHHHHHhccccc---------ccccchhHHHHHHHhhhccccccccccceeeeeec
Q 007653 79 NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELY---------SEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACS 149 (594)
Q Consensus 79 ~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~---------~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~ 149 (594)
...++.++.+...+.+.+...++.+..+..+|.+++ ..+++.+|+..|+++++++|.++. +|
T Consensus 271 ~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~---------a~ 341 (553)
T PRK12370 271 QYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ---------AL 341 (553)
T ss_pred ccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH---------HH
Confidence 345667778888888899989988888888876554 445689999999999999999965 78
Q ss_pred ccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653 150 LNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (594)
Q Consensus 150 ~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l 227 (594)
..+|.++...|+|++|+..|+++++++|+++.+|+.+|.+|...|++++|+.+|+++++++|.+..+...+..+....
T Consensus 342 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~ 419 (553)
T PRK12370 342 GLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH 419 (553)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999887655544444433
No 30
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.04 E-value=6.7e-11 Score=129.94 Aligned_cols=146 Identities=15% Similarity=0.130 Sum_probs=129.9
Q ss_pred hHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecccc
Q 007653 82 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ 161 (594)
Q Consensus 82 ~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~ 161 (594)
.++++.+...|+.++.-.++...+|+-+|.+|.++++|+.|.-+|++|++++|... ....-+|..|.++|+
T Consensus 468 ~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns---------vi~~~~g~~~~~~k~ 538 (638)
T KOG1126|consen 468 TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS---------VILCHIGRIQHQLKR 538 (638)
T ss_pred hHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccch---------hHHhhhhHHHHHhhh
Confidence 35677888888899998999999999999999999999999999999999999883 355678888999999
Q ss_pred chhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCC
Q 007653 162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGP 236 (594)
Q Consensus 162 y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~ 236 (594)
.++|+..|++|+.+||.++-.-|.+|.++..+++|++|+..||+.-++.|++..++..++++..++++..-+...
T Consensus 539 ~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~ 613 (638)
T KOG1126|consen 539 KDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLH 613 (638)
T ss_pred hhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999998877654433
No 31
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=6.3e-11 Score=116.26 Aligned_cols=116 Identities=29% Similarity=0.326 Sum_probs=102.8
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchH
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 181 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k 181 (594)
.++.++..||.+|..++|..||.+|.++|-++|.. +..|.|++.||+++++|+.+..+|.+||.++|+.++
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~---------~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk 79 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTV---------ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVK 79 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCc---------chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHH
Confidence 46679999999999999999999999999999998 458999999999999999999999999999999999
Q ss_pred HHHHhccchhhhhhHHHHhhhcccccccC---C--CCChHHHHHhHHHHH
Q 007653 182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVS---P--DDGTIADVLRDAKEI 226 (594)
Q Consensus 182 a~~~rg~al~~lg~~~eAi~~lekAl~l~---P--~~~~a~~~l~~a~~~ 226 (594)
++|.+|.++.....|++||..+.+|+.+- | .-..+...|..+++.
T Consensus 80 ~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~ 129 (284)
T KOG4642|consen 80 AHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKK 129 (284)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhC
Confidence 99999999999999999999999995542 1 224577777776443
No 32
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.02 E-value=9.3e-11 Score=113.65 Aligned_cols=180 Identities=16% Similarity=0.134 Sum_probs=128.9
Q ss_pred hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHH-hhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchh
Q 007653 43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN 121 (594)
Q Consensus 43 A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~-~~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~e 121 (594)
+...+...+.++....++......|+........ .......+++.+...+...+...+.....+..+|..++..|+|++
T Consensus 38 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~ 117 (234)
T TIGR02521 38 ALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQ 117 (234)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHH
Confidence 4444555556666555555544445443332222 111122344556666666666677777888889999999999999
Q ss_pred HHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhh
Q 007653 122 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS 201 (594)
Q Consensus 122 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~ 201 (594)
|+..|.+++...+... ....+.++|.||...|++++|+..|.+++.++|+++.+++.+|.++...|++++|+.
T Consensus 118 A~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 118 AMQQFEQAIEDPLYPQ-------PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HHHHHHHHHhcccccc-------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999987532111 133678889999999999999999999999999999999999999999999999999
Q ss_pred hcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 202 DLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 202 ~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
.+++++.+.|.+...+..+..+....++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (234)
T TIGR02521 191 YLERYQQTYNQTAESLWLGIRIARALGD 218 (234)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhh
Confidence 9999998888777766666665555443
No 33
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.00 E-value=9.2e-11 Score=135.05 Aligned_cols=119 Identities=15% Similarity=0.108 Sum_probs=89.1
Q ss_pred HHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh----hhhhcceeeeecccchHH
Q 007653 107 KKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE----CIKVGSEVLAYDAKNVKA 182 (594)
Q Consensus 107 ~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e----Ai~~~~~AL~ldP~~~ka 182 (594)
...+..++..|+|++|+..|.+++++.|.++. +++++|.+|...|+|++ |+..|+++++++|+++.+
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~---------~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a 286 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALARGLDGAA---------LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRI 286 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHH
Confidence 34466677777888888888888777777643 67777888888887775 677788888888888888
Q ss_pred HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCC
Q 007653 183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHH 234 (594)
Q Consensus 183 ~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~ 234 (594)
++.+|.+|...|++++|+..|++++.++|++..++..++.+....+++..+.
T Consensus 287 ~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~ 338 (656)
T PRK15174 287 VTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAAS 338 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 8888888888888888888888888888887777777777776666655443
No 34
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.99 E-value=1e-10 Score=134.61 Aligned_cols=145 Identities=12% Similarity=0.043 Sum_probs=124.8
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchh----HHHHHHHhhhccccccccccceeeeeecccCceeeecc
Q 007653 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN----ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT 159 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~e----Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl 159 (594)
+++.+...+...+...++.+..+..+|..++..|+|++ |+..|+++++++|.++ .++.++|.+|.+.
T Consensus 227 ~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~---------~a~~~lg~~l~~~ 297 (656)
T PRK15174 227 KYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV---------RIVTLYADALIRT 297 (656)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH---------HHHHHHHHHHHHC
Confidence 34456677777777788889999999999999999986 8999999999999884 4889999999999
Q ss_pred ccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCc
Q 007653 160 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPR 237 (594)
Q Consensus 160 g~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~ 237 (594)
|+|++|+..|++++.++|+++.+++++|.+|..+|++++|+..|++++..+|++..+...++.+....++...+...+
T Consensus 298 g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 298 GQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998776666666666666555443333
No 35
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.98 E-value=7.1e-11 Score=135.51 Aligned_cols=143 Identities=6% Similarity=-0.068 Sum_probs=125.7
Q ss_pred HhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhc
Q 007653 90 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 169 (594)
Q Consensus 90 ~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~ 169 (594)
.++.+-.+..+..++.++.+|.+....|+|++|+..|..++++.|++. .++.+++.++.+++++++|+..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~---------~a~~~~a~~L~~~~~~eeA~~~~ 143 (694)
T PRK15179 73 PELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS---------EAFILMLRGVKRQQGIEAGRAEI 143 (694)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH---------HHHHHHHHHHHHhccHHHHHHHH
Confidence 333444444666789999999999999999999999999999999984 48999999999999999999999
Q ss_pred ceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653 170 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (594)
Q Consensus 170 ~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i 241 (594)
++++..+|+++.+++.+|.++..+|+|++|+..|++++..+|+++.++-.++.+.+..++...+...++..+
T Consensus 144 ~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 144 ELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999888888776655555554
No 36
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.98 E-value=5.4e-11 Score=110.91 Aligned_cols=108 Identities=6% Similarity=-0.119 Sum_probs=98.6
Q ss_pred HHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhh
Q 007653 122 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS 201 (594)
Q Consensus 122 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~ 201 (594)
-..+|+++++++|.. ++++|.++...|+|++|+..|++++.++|.+..+|+.+|.++..+|+|++|+.
T Consensus 12 ~~~~~~~al~~~p~~------------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 79 (144)
T PRK15359 12 PEDILKQLLSVDPET------------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAIN 79 (144)
T ss_pred HHHHHHHHHHcCHHH------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 456799999999886 45789999999999999999999999999999999999999999999999999
Q ss_pred hcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653 202 DLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (594)
Q Consensus 202 ~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i 241 (594)
.|++++.++|++..++..++.+...+++..++...+...+
T Consensus 80 ~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al 119 (144)
T PRK15359 80 FYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAI 119 (144)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999988877666655554
No 37
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=1.7e-10 Score=125.07 Aligned_cols=136 Identities=16% Similarity=0.116 Sum_probs=115.4
Q ss_pred HHHHHHhhhhcccccc--hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccc
Q 007653 85 IATMRARIDAQMNYEF--NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162 (594)
Q Consensus 85 l~aa~~~~~a~~~~~~--~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y 162 (594)
+......|.......+ ..++.+..+|.+|+-.|.|++|+.||+.||...|.+ ..+|+.+|+++....++
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd---------~~lWNRLGAtLAN~~~s 480 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPND---------YLLWNRLGATLANGNRS 480 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCch---------HHHHHHhhHHhcCCccc
Confidence 3334444444444444 567889999999999999999999999999999999 45999999999999999
Q ss_pred hhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC----------ChHHHHHhHHHHHhhh
Q 007653 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD----------GTIADVLRDAKEILMK 229 (594)
Q Consensus 163 ~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~----------~~a~~~l~~a~~~l~~ 229 (594)
++||..|.+||.|.|.++.+.||+|.++..+|.|+||+++|-.||.+.+.. ..+|..|+.+.....+
T Consensus 481 ~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~ 557 (579)
T KOG1125|consen 481 EEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNR 557 (579)
T ss_pred HHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999998762 2477777766555443
No 38
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.95 E-value=2.3e-10 Score=119.31 Aligned_cols=85 Identities=13% Similarity=0.049 Sum_probs=43.7
Q ss_pred HHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhh
Q 007653 87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166 (594)
Q Consensus 87 aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi 166 (594)
.+...+...+...++.+..+..+|..+...|+|++|+..|.++++++|.+. .+|.|+|.+|+..|+|++|+
T Consensus 82 ~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~---------~a~~~lg~~l~~~g~~~eA~ 152 (296)
T PRK11189 82 LARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---------YAYLNRGIALYYGGRYELAQ 152 (296)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHCCCHHHHH
Confidence 334444444444555555555555555555555555555555555555542 24555555555555555555
Q ss_pred hhcceeeeecccch
Q 007653 167 KVGSEVLAYDAKNV 180 (594)
Q Consensus 167 ~~~~~AL~ldP~~~ 180 (594)
++|+++++++|+++
T Consensus 153 ~~~~~al~~~P~~~ 166 (296)
T PRK11189 153 DDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHHHHHhCCCCH
Confidence 55555555544443
No 39
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.94 E-value=3.4e-10 Score=122.83 Aligned_cols=203 Identities=14% Similarity=0.055 Sum_probs=165.1
Q ss_pred ChhHHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHH-hhcCChHHHHHHHHhhhhcccccchHHHHHHHhccccc
Q 007653 36 NPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELY 114 (594)
Q Consensus 36 ~p~l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~-~~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~ 114 (594)
+|+-+......|++..-.+..-++|+-....|++++++... +.+..-+.-..+...+++.++..+...+++..++..|.
T Consensus 285 ~pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSyt 364 (579)
T KOG1125|consen 285 HPDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYT 364 (579)
T ss_pred CCChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHh
Confidence 45666778888888888888888999889999999987654 23333333335666788888889999999999999998
Q ss_pred ccccchhHHHHHHHhhhccccccc----------------------------------cccceeeeeecccCceeeeccc
Q 007653 115 SEGRFSNALQKYLLAKKNLQGIHS----------------------------------SEGRTLLLACSLNSMSCYLKTK 160 (594)
Q Consensus 115 ~~g~y~eAi~~Y~kAL~l~p~~~~----------------------------------~e~~~l~~~~~~N~a~~~~klg 160 (594)
.+|.-.+|+.++.+=|...|.... .........++.-||.+|+-.+
T Consensus 365 Neg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 365 NEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 888888888887777665543210 0011234557888999999999
Q ss_pred cchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCcc
Q 007653 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG 238 (594)
Q Consensus 161 ~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~ 238 (594)
+|++|+++|+.||..+|++...|.++|.++..-.+.++||..|.+|++|.|.+..++.+++..+--++-|+++.+..-
T Consensus 445 efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998887655533
No 40
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.93 E-value=1.2e-10 Score=112.89 Aligned_cols=141 Identities=10% Similarity=0.069 Sum_probs=121.3
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~ 163 (594)
+++.+...+...+...+.....+..+|..++..|++++|+..|.+++++.|.++. ++.+++.+|...|+|+
T Consensus 46 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~~~g~~~ 116 (234)
T TIGR02521 46 DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD---------VLNNYGTFLCQQGKYE 116 (234)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---------HHHHHHHHHHHcccHH
Confidence 3445555555556666777889999999999999999999999999999888743 7899999999999999
Q ss_pred hhhhhcceeeeec--ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653 164 ECIKVGSEVLAYD--AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 233 (594)
Q Consensus 164 eAi~~~~~AL~ld--P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a 233 (594)
+|+..|.+++... +.....++.+|.+|...|++++|+..|++++.++|++..++..++.+....++...+
T Consensus 117 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 117 QAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 9999999999754 567789999999999999999999999999999999998888888888777665543
No 41
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.8e-10 Score=120.50 Aligned_cols=158 Identities=17% Similarity=0.114 Sum_probs=133.4
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccc---cceeeeeecccCceeeeccc
Q 007653 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE---GRTLLLACSLNSMSCYLKTK 160 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e---~~~l~~~~~~N~a~~~~klg 160 (594)
+...+..+.+..++.....+++++..|.+++-..+.+.|+.+|.++|.++|...... ...-....+.++|.-.++.|
T Consensus 184 ~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G 263 (486)
T KOG0550|consen 184 DYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNG 263 (486)
T ss_pred cchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhcc
Confidence 344677788888888999999999999999999999999999999999999875311 01111235678888899999
Q ss_pred cchhhhhhcceeeeecccc----hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCC
Q 007653 161 QYDECIKVGSEVLAYDAKN----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGP 236 (594)
Q Consensus 161 ~y~eAi~~~~~AL~ldP~~----~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~ 236 (594)
+|.+|.++|+++|.+||+| ++.|++|+.++.++|+.++|+.+++.|+.|||.+-+++.+.+.|+..+.+.+++.+.
T Consensus 264 ~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d 343 (486)
T KOG0550|consen 264 NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVED 343 (486)
T ss_pred chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999975 778999999999999999999999999999999999999999998888877765544
Q ss_pred ccchH
Q 007653 237 RGLLI 241 (594)
Q Consensus 237 ~~~~i 241 (594)
+..++
T Consensus 344 ~~~a~ 348 (486)
T KOG0550|consen 344 YEKAM 348 (486)
T ss_pred HHHHH
Confidence 44443
No 42
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.90 E-value=6.8e-10 Score=108.89 Aligned_cols=165 Identities=16% Similarity=0.071 Sum_probs=96.2
Q ss_pred hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHH-hhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchh
Q 007653 43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN 121 (594)
Q Consensus 43 A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~-~~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~e 121 (594)
+.+.+.+.+....+.-++.....+|..+.....+ ...+...+.+.+...|++.+...++..+.+.|.|..++.+|+|++
T Consensus 42 al~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 42 ALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHH
Confidence 5555555555555555555555555544443322 111222234455566666666666666666666666666666666
Q ss_pred HHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhh
Q 007653 122 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS 201 (594)
Q Consensus 122 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~ 201 (594)
|...|++|+. +|..+. ....|.|+|.|.++.|+++.|..+|+++|++||+++-+...++..++..|+|..|..
T Consensus 122 A~q~F~~Al~-~P~Y~~------~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 122 AMQQFERALA-DPAYGE------PSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred HHHHHHHHHh-CCCCCC------cchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 6666666665 343332 234566666666666666666666666666666666666666666666666666666
Q ss_pred hcccccccCCCCC
Q 007653 202 DLSNAHEVSPDDG 214 (594)
Q Consensus 202 ~lekAl~l~P~~~ 214 (594)
++++...--+-..
T Consensus 195 ~~~~~~~~~~~~A 207 (250)
T COG3063 195 YLERYQQRGGAQA 207 (250)
T ss_pred HHHHHHhcccccH
Confidence 6666555444333
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=7.2e-10 Score=119.89 Aligned_cols=138 Identities=19% Similarity=0.255 Sum_probs=117.7
Q ss_pred HHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhh
Q 007653 88 MRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK 167 (594)
Q Consensus 88 a~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~ 167 (594)
+..=+..+....|..+-.++.+|.++|..+.|.+|+.+|..++...+..... ...-.+.++|+|.+|+++++|++||.
T Consensus 399 Ae~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e--~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 399 AEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE--KIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc--ccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 3334445555677778899999999999999999999999999655544221 11235578999999999999999999
Q ss_pred hcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653 168 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (594)
Q Consensus 168 ~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l 227 (594)
.|+++|.+.|.++.+|.-.|.+|..+|+++.|+++|.++|.++|++..+...|+.+.+.-
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~~ 536 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIEDS 536 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999888888776553
No 44
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.85 E-value=2.3e-10 Score=112.41 Aligned_cols=120 Identities=11% Similarity=0.010 Sum_probs=108.6
Q ss_pred ccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccch-h
Q 007653 113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY-K 191 (594)
Q Consensus 113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al-~ 191 (594)
+...+++.+++..|.++++.+|.+.. .|.++|.+|...++|++|+..|+++++++|+++..++.+|.++ .
T Consensus 49 ~~~~~~~~~~i~~l~~~L~~~P~~~~---------~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~ 119 (198)
T PRK10370 49 FASQQTPEAQLQALQDKIRANPQNSE---------QWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYY 119 (198)
T ss_pred ccCchhHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33478889999999999999999955 8999999999999999999999999999999999999999986 6
Q ss_pred hhhh--HHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653 192 DIGR--LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (594)
Q Consensus 192 ~lg~--~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i 241 (594)
..|+ +++|+..|+++++++|++..++..++.+....++++.+....+..+
T Consensus 120 ~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 120 QAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7787 5999999999999999999999999999999988887666655555
No 45
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.84 E-value=3.9e-10 Score=99.37 Aligned_cols=111 Identities=15% Similarity=0.165 Sum_probs=98.4
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc---
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN--- 179 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~--- 179 (594)
++.++.+|..+++.|+|.+|+..|.+++...|..+. ...+++++|.+|++.++|++|+..|.+++..+|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 75 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY------APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA 75 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc
Confidence 357889999999999999999999999998876531 13478899999999999999999999999998885
Q ss_pred hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHH
Q 007653 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADV 219 (594)
Q Consensus 180 ~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~ 219 (594)
+.+++.+|.+|..+|++++|+..|++++...|++..+...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 76 PDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred cHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 6789999999999999999999999999999998765543
No 46
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.83 E-value=1.4e-10 Score=93.50 Aligned_cols=65 Identities=29% Similarity=0.504 Sum_probs=62.7
Q ss_pred eecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhh-hHHHHhhhcccccccCC
Q 007653 147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-RLEEAVSDLSNAHEVSP 211 (594)
Q Consensus 147 ~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg-~~~eAi~~lekAl~l~P 211 (594)
.+|.++|.+++..++|++|+.+|+++|+++|+++.+|+++|.+|..+| ++++|+.+|+++++++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 368899999999999999999999999999999999999999999999 89999999999999998
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.2e-09 Score=115.89 Aligned_cols=141 Identities=14% Similarity=0.065 Sum_probs=71.3
Q ss_pred hhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcce
Q 007653 92 IDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE 171 (594)
Q Consensus 92 ~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~ 171 (594)
++.+++.++....+|--.|..+...++...||+.|++|++++|.+ ..+|+.+|++|--++-+.=|+-+|++
T Consensus 353 FkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D---------yRAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 353 FKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD---------YRAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred HHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh---------HHHHhhhhHHHHHhcchHHHHHHHHH
Confidence 333344444444455555555555555555555555555555554 22455555555555555555555555
Q ss_pred eeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653 172 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (594)
Q Consensus 172 AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i 241 (594)
|+++.|.+...|..+|.||..+++.++|+++|.+|+...-.+..++-.|+++.+.+++.+++...+.+.+
T Consensus 424 A~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 424 ALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred HHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555544444555555555555555444444444444
No 48
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.81 E-value=7.7e-10 Score=135.14 Aligned_cols=116 Identities=14% Similarity=0.114 Sum_probs=74.2
Q ss_pred HhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhc
Q 007653 108 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRG 187 (594)
Q Consensus 108 ~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg 187 (594)
.+|..+++.|+|++|+.+|+++++++|.++ .+++++|.+|...|+|++|++.|+++++++|++..+++.++
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~---------~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDS---------YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 345556666666666666666666666553 35666777777777777777777777777777666554443
Q ss_pred cc------------------------------------------hhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007653 188 QA------------------------------------------YKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 225 (594)
Q Consensus 188 ~a------------------------------------------l~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~ 225 (594)
.+ +...|++++|+..|+++++++|+++.++..++.+..
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLR 506 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33 334567777777777777777777766666666665
Q ss_pred HhhhccC
Q 007653 226 ILMKEDG 232 (594)
Q Consensus 226 ~l~~~~~ 232 (594)
..++.+.
T Consensus 507 ~~G~~~~ 513 (1157)
T PRK11447 507 QAGQRSQ 513 (1157)
T ss_pred HcCCHHH
Confidence 5555443
No 49
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.81 E-value=2.6e-09 Score=104.84 Aligned_cols=142 Identities=13% Similarity=-0.005 Sum_probs=124.8
Q ss_pred ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc
Q 007653 81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160 (594)
Q Consensus 81 ~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg 160 (594)
...+...++..+.+.++..++...+|..++..|.+.|..+.|-+.|++|+.+.|+..+ +++|.|..+..+|
T Consensus 47 ~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd---------VLNNYG~FLC~qg 117 (250)
T COG3063 47 QQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD---------VLNNYGAFLCAQG 117 (250)
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc---------hhhhhhHHHHhCC
Confidence 3445667888888999999999999999999999999999999999999999999954 8999999999999
Q ss_pred cchhhhhhcceeeee--cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653 161 QYDECIKVGSEVLAY--DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 231 (594)
Q Consensus 161 ~y~eAi~~~~~AL~l--dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~ 231 (594)
+|++|...|++|+.. -+..++.|-|+|.|-++.|+++.|..+|+++|+++|+++.....+...+..-+++-
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence 999999999999863 23457899999999999999999999999999999999887777776666555544
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.81 E-value=5.9e-10 Score=114.73 Aligned_cols=133 Identities=20% Similarity=0.144 Sum_probs=103.4
Q ss_pred chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc
Q 007653 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 179 (594)
Q Consensus 100 ~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~ 179 (594)
...+..+...|.++.+.|++++|+.+|+++++++|.++. +...++.++...|+++++...+....+..|++
T Consensus 143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~---------~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~ 213 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD---------ARNALAWLLIDMGDYDEAREALKRLLKAAPDD 213 (280)
T ss_dssp -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH---------HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH
Confidence 466788999999999999999999999999999999864 67788999999999999888888888878999
Q ss_pred hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (594)
Q Consensus 180 ~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i 241 (594)
+..+..+|.+|..+|++++|+.+|+++++.+|+|+.+...++.+....++.+.+..-+....
T Consensus 214 ~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 214 PDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999988877665554443
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=7.6e-10 Score=117.27 Aligned_cols=130 Identities=18% Similarity=0.096 Sum_probs=120.4
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka 182 (594)
++...-.||-|.-++++++|+.+|++||+++|.. ..+|.-.|+=|..+++-..||+.|++|++++|.+.++
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~---------~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA 400 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKY---------LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA 400 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcch---------hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH
Confidence 4566778899999999999999999999999998 4589999999999999999999999999999999999
Q ss_pred HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653 183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (594)
Q Consensus 183 ~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i 241 (594)
||-+|++|.-++-+.-|+-+|++|+.+.|+|+.+|..|++|..++.+-..+...+..++
T Consensus 401 WYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai 459 (559)
T KOG1155|consen 401 WYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAI 459 (559)
T ss_pred HhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988777766666555
No 52
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.80 E-value=1.2e-09 Score=112.06 Aligned_cols=119 Identities=22% Similarity=0.268 Sum_probs=107.1
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~ 178 (594)
.+..++.++.+|+.++..|+|.+|+.+|..|++.+|+. ..+++.||.+|+.+|+-..|+.+++++|++.|+
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~---------Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpD 104 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN---------YQAIFRRATVYLAMGKSKAALQDLSRVLELKPD 104 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh---------HHHHHHHHHHHhhhcCCccchhhHHHHHhcCcc
Confidence 44557889999999999999999999999999999998 458999999999999999999999999999999
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCC---hHHHHHhHHHHH
Q 007653 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG---TIADVLRDAKEI 226 (594)
Q Consensus 179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~---~a~~~l~~a~~~ 226 (594)
...+...||.+++..|++++|..+|+..|..+|.+. ++++.+..+.+.
T Consensus 105 F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~ 155 (504)
T KOG0624|consen 105 FMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEH 155 (504)
T ss_pred HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHH
Confidence 999999999999999999999999999999999653 455555555433
No 53
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.80 E-value=1.2e-09 Score=127.00 Aligned_cols=136 Identities=16% Similarity=0.140 Sum_probs=113.6
Q ss_pred HHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhh
Q 007653 86 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 165 (594)
Q Consensus 86 ~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eA 165 (594)
..+...+...+...++....+..+|..+...|++++|+..|+++++..|.++ .++.+++.+|...++ .+|
T Consensus 753 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---------~~~~~l~~~~~~~~~-~~A 822 (899)
T TIGR02917 753 AEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNA---------VVLNNLAWLYLELKD-PRA 822 (899)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHhcCc-HHH
Confidence 3455555555666777788888889889999999999999999998888774 378888888888888 889
Q ss_pred hhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653 166 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 231 (594)
Q Consensus 166 i~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~ 231 (594)
+..+++++.+.|+++..++.+|.+|...|++++|+.+|+++++++|.++.++..+..+..+.++..
T Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 888 (899)
T TIGR02917 823 LEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKA 888 (899)
T ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999999999999999998888888888877766544
No 54
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.79 E-value=1.7e-09 Score=132.10 Aligned_cols=142 Identities=13% Similarity=0.109 Sum_probs=118.2
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccc-----------------------
Q 007653 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE----------------------- 140 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e----------------------- 140 (594)
+++.+...+.+.+...+..+..+..+|.++...|+|++|+.+|+++++++|.+....
T Consensus 366 ~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~ 445 (1157)
T PRK11447 366 NLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLS 445 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCC
Confidence 455677777788888888899999999999999999999999999999998864310
Q ss_pred ----------cceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccC
Q 007653 141 ----------GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 210 (594)
Q Consensus 141 ----------~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~ 210 (594)
...+...++.+++.++...|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++
T Consensus 446 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~ 525 (1157)
T PRK11447 446 ASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK 525 (1157)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 0001122344567778889999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHhHHHH
Q 007653 211 PDDGTIADVLRDAKE 225 (594)
Q Consensus 211 P~~~~a~~~l~~a~~ 225 (594)
|+++.++..+.....
T Consensus 526 P~~~~~~~a~al~l~ 540 (1157)
T PRK11447 526 PNDPEQVYAYGLYLS 540 (1157)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999888776655443
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=2.3e-09 Score=114.27 Aligned_cols=207 Identities=13% Similarity=0.088 Sum_probs=168.9
Q ss_pred cchHHHHHHHHhcChh-HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccc
Q 007653 23 PDDFARIQQQMMANPE-LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEF 100 (594)
Q Consensus 23 p~~l~r~~~~m~~~p~-l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~-~~~~~~el~aa~~~~~a~~~~~~ 100 (594)
.+|+.....---.++. +++.|.-.++..+++.....+......+|+.-...+.|. .....++++.+.+.+++.+...+
T Consensus 346 ~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p 425 (606)
T KOG0547|consen 346 QEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP 425 (606)
T ss_pred hhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 3444443332223445 888888888888888888888777778887766666552 22355678899999999999999
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc--
Q 007653 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK-- 178 (594)
Q Consensus 101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~-- 178 (594)
+.+-.+..++..+|+++++.++...|+++++..|..++ +|.-.|.++..+++|+.|++.|+.||+|.|.
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~E---------vy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~ 496 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPE---------VYNLFAEILTDQQQFDKAVKQYDKAIELEPREH 496 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch---------HHHHHHHHHhhHHhHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999976 8888999999999999999999999999999
Q ss_pred ----chHHHHHhccchhh-hhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCcc
Q 007653 179 ----NVKALYRRGQAYKD-IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG 238 (594)
Q Consensus 179 ----~~ka~~~rg~al~~-lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~ 238 (594)
++..+...|.++.+ .+++..|+..+++|+++||....++.-++.++-+.++-.++.+-++
T Consensus 497 ~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 497 LIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred cccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 88888888877754 4789999999999999999999888888887766665544443333
No 56
>PLN02789 farnesyltranstransferase
Probab=98.77 E-value=2.4e-09 Score=112.72 Aligned_cols=133 Identities=10% Similarity=-0.054 Sum_probs=119.8
Q ss_pred HHHHHhhhhcccccchHHHHHHHhcccccccc-cchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccc--
Q 007653 86 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEG-RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY-- 162 (594)
Q Consensus 86 ~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g-~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y-- 162 (594)
..+...+...+..+++...++..+|.++...+ ++.+++..|.++++.+|.+. .+|.+|+.++.+++++
T Consensus 54 erAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny---------qaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 54 PRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY---------QIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch---------HHhHHHHHHHHHcCchhh
Confidence 35666666777788888999999999999888 68999999999999999984 4899999999888874
Q ss_pred hhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (594)
Q Consensus 163 ~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l 227 (594)
++++.+++++|++||+|..+|+.|+.++..+|+|++|+++++++++++|.|..++..+..+...+
T Consensus 125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 78899999999999999999999999999999999999999999999999999999999887655
No 57
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.77 E-value=8.5e-10 Score=89.96 Aligned_cols=99 Identities=30% Similarity=0.435 Sum_probs=91.5
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHH
Q 007653 105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY 184 (594)
Q Consensus 105 ~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~ 184 (594)
.+..+|..++..|+|.+|+..|.++++..|..+ .++++++.||...+++++|+..|.+++.+.|.+..+++
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 72 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA---------DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYY 72 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHH
Confidence 467888899999999999999999999988774 37889999999999999999999999999999999999
Q ss_pred HhccchhhhhhHHHHhhhcccccccCCC
Q 007653 185 RRGQAYKDIGRLEEAVSDLSNAHEVSPD 212 (594)
Q Consensus 185 ~rg~al~~lg~~~eAi~~lekAl~l~P~ 212 (594)
.+|.++...|++++|..++++++.++|+
T Consensus 73 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 73 NLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999988874
No 58
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.76 E-value=5.4e-10 Score=94.09 Aligned_cols=83 Identities=25% Similarity=0.392 Sum_probs=73.1
Q ss_pred cccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhh
Q 007653 116 EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR 195 (594)
Q Consensus 116 ~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~ 195 (594)
.|+|++|+..|++++...|..+. ..+++++|.||++.|+|++|+..+++ +++++.++..++.+|.||..+|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~-------~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPN-------SAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK 73 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHH-------HHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-
T ss_pred CccHHHHHHHHHHHHHHCCCChh-------HHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC
Confidence 58999999999999999995321 33678899999999999999999999 99999999999999999999999
Q ss_pred HHHHhhhcccc
Q 007653 196 LEEAVSDLSNA 206 (594)
Q Consensus 196 ~~eAi~~lekA 206 (594)
|++|+..|+++
T Consensus 74 y~eAi~~l~~~ 84 (84)
T PF12895_consen 74 YEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999999864
No 59
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.75 E-value=1.2e-09 Score=104.48 Aligned_cols=109 Identities=18% Similarity=0.230 Sum_probs=96.0
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~ 178 (594)
....+..++.+|..+...|+|++|+.+|++++.+.|..+. ...++.++|.+|.++|+|++|+..|.+++.++|.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 104 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND------RSYILYNMGIIYASNGEHDKALEYYHQALELNPK 104 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 4556778999999999999999999999999988765421 1347899999999999999999999999999999
Q ss_pred chHHHHHhccchhhhhh--------------HHHHhhhcccccccCCCC
Q 007653 179 NVKALYRRGQAYKDIGR--------------LEEAVSDLSNAHEVSPDD 213 (594)
Q Consensus 179 ~~ka~~~rg~al~~lg~--------------~~eAi~~lekAl~l~P~~ 213 (594)
+..+++.+|.+|..+|+ +++|++.+++++.++|++
T Consensus 105 ~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 105 QPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred cHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 99999999999999887 677888888888888876
No 60
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=5.3e-09 Score=110.27 Aligned_cols=183 Identities=18% Similarity=0.159 Sum_probs=140.6
Q ss_pred HHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhhc----CChHHHHHHHHhhhhcccccchHHHHHHHhcccccc
Q 007653 40 MRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLAN----ASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYS 115 (594)
Q Consensus 40 ~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~~----~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~ 115 (594)
+..|.+.|++.+.+....+...+...+.....+....+.. +...++..+..-.+..+....-.+.++.++||..|.
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFA 502 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeee
Confidence 3447777777776666666655544433332222222111 112234444444444444444557789999999999
Q ss_pred cccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhh
Q 007653 116 EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR 195 (594)
Q Consensus 116 ~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~ 195 (594)
.|+|++|.+.|+++|..+..+.. +++|+|..+.++|+.++|+++|-+...+--+++..++.++.+|-.+.+
T Consensus 503 ngd~dka~~~ykeal~ndasc~e---------alfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led 573 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTE---------ALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLED 573 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHH---------HHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhC
Confidence 99999999999999998877743 789999999999999999999999888888999999999999999999
Q ss_pred HHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653 196 LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 231 (594)
Q Consensus 196 ~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~ 231 (594)
...|+++|-++..+-|+++.+...|+.+..+-+...
T Consensus 574 ~aqaie~~~q~~slip~dp~ilskl~dlydqegdks 609 (840)
T KOG2003|consen 574 PAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKS 609 (840)
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchh
Confidence 999999999999999999999999999877665533
No 61
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.74 E-value=5.1e-10 Score=90.23 Aligned_cols=67 Identities=19% Similarity=0.244 Sum_probs=63.4
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc-cchhhhhhcceeeeecc
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-QYDECIKVGSEVLAYDA 177 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg-~y~eAi~~~~~AL~ldP 177 (594)
.+..+..+|..++..|+|++|+.+|+++|+++|.++. +|+|+|.||.+++ +|.+|+.+|+++|+++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~---------~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAE---------AYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHH---------HHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4678999999999999999999999999999999854 9999999999999 89999999999999998
No 62
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.71 E-value=8.6e-09 Score=119.83 Aligned_cols=180 Identities=16% Similarity=0.081 Sum_probs=127.0
Q ss_pred hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcc-cccchHHHHHHHhcccccccccch
Q 007653 43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQM-NYEFNAAKMLKKQGNELYSEGRFS 120 (594)
Q Consensus 43 A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~-~~~~~~el~aa~~~~~a~~-~~~~~~a~~l~~~Gn~~~~~g~y~ 120 (594)
+.-.+...+.++....++.+....|.......... +......+..+...+.... ......+..+..+|..++..|+|+
T Consensus 63 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (899)
T TIGR02917 63 GKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLE 142 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHH
Confidence 33334455556665555555544443322211110 0001112233444333332 234556778888999999999999
Q ss_pred hHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHh
Q 007653 121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV 200 (594)
Q Consensus 121 eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi 200 (594)
+|+..|.++++.+|... .+++.++.+++..|+|++|+..++++++.+|.+..+++.+|.++...|++++|+
T Consensus 143 ~A~~~~~~a~~~~~~~~---------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 213 (899)
T TIGR02917 143 LAQKSYEQALAIDPRSL---------YAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELAL 213 (899)
T ss_pred HHHHHHHHHHhcCCCCh---------hhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999888774 378889999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653 201 SDLSNAHEVSPDDGTIADVLRDAKEILMKED 231 (594)
Q Consensus 201 ~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~ 231 (594)
..|++++.++|++..++..+..+....++..
T Consensus 214 ~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~ 244 (899)
T TIGR02917 214 AAYRKAIALRPNNPAVLLALATILIEAGEFE 244 (899)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Confidence 9999999999998888777777665555443
No 63
>PLN02789 farnesyltranstransferase
Probab=98.69 E-value=5.5e-09 Score=110.03 Aligned_cols=167 Identities=10% Similarity=-0.040 Sum_probs=135.1
Q ss_pred CCchhhhhhhhhcCCChhHHHHHHHHh--hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccc--hhHHHHH
Q 007653 51 RPEDLKCAAEQLTHTPPEEVAEIGEKL--ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRF--SNALQKY 126 (594)
Q Consensus 51 ~pe~~~~a~e~l~~~~pee~~~~~~~~--~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y--~eAi~~Y 126 (594)
..++......++....|+.......|. ...-...+..+..-+...+..+++....|..++.++.+.+++ .+++.++
T Consensus 52 ~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~ 131 (320)
T PLN02789 52 RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFT 131 (320)
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHH
Confidence 455666666666677777776655552 211122345666667777778899999999999888777764 7889999
Q ss_pred HHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhh---hhH----HHH
Q 007653 127 LLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI---GRL----EEA 199 (594)
Q Consensus 127 ~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~l---g~~----~eA 199 (594)
.++|+.+|.+. .+|.+|+.++..+++|++++++|+++|++||.|..+|+.|+.++..+ |.+ +++
T Consensus 132 ~kal~~dpkNy---------~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 132 RKILSLDAKNY---------HAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHhCcccH---------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 99999999984 49999999999999999999999999999999999999999998876 333 578
Q ss_pred hhhcccccccCCCCChHHHHHhHHHHH
Q 007653 200 VSDLSNAHEVSPDDGTIADVLRDAKEI 226 (594)
Q Consensus 200 i~~lekAl~l~P~~~~a~~~l~~a~~~ 226 (594)
+.++.+++.++|+|..+|..++-+...
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 999999999999999999999888654
No 64
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.69 E-value=9.9e-09 Score=118.04 Aligned_cols=123 Identities=8% Similarity=-0.108 Sum_probs=113.6
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164 (594)
Q Consensus 85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e 164 (594)
++.+...+...+++.++...++.+.+.++.+.+++++|+..+++++...|+.+. +++++|.|+.++|+|++
T Consensus 102 ~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~---------~~~~~a~~l~~~g~~~~ 172 (694)
T PRK15179 102 SDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR---------EILLEAKSWDEIGQSEQ 172 (694)
T ss_pred cHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH---------HHHHHHHHHHHhcchHH
Confidence 445677778888889999999999999999999999999999999999999954 88999999999999999
Q ss_pred hhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChH
Q 007653 165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 216 (594)
Q Consensus 165 Ai~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a 216 (594)
|+..|++++..+|++++++..+|.+|...|+.++|+..|++|+.+..+..+.
T Consensus 173 A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 173 ADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 9999999999999999999999999999999999999999999987765443
No 65
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.1e-08 Score=104.50 Aligned_cols=140 Identities=18% Similarity=0.164 Sum_probs=119.4
Q ss_pred hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeee
Q 007653 78 ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL 157 (594)
Q Consensus 78 ~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~ 157 (594)
....+++.+.....++.+++.+++.++.|.-+|.+|+..+++..|...|.+|+++.|+.++ .+.-+|.+++
T Consensus 131 ~~~~~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~---------~~~g~aeaL~ 201 (287)
T COG4235 131 QPPAEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE---------ILLGLAEALY 201 (287)
T ss_pred cCCCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH---------HHHHHHHHHH
Confidence 3345666777888889999999999999999999999999999999999999999999976 4455555554
Q ss_pred cc---ccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007653 158 KT---KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (594)
Q Consensus 158 kl---g~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~ 226 (594)
.. ..-.++...++++|++||.++.+.+.+|..++..|+|.+|+..++..+.+.|.+..-...+......
T Consensus 202 ~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~ 273 (287)
T COG4235 202 YQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIAR 273 (287)
T ss_pred HhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 43 3567888999999999999999999999999999999999999999999999887766666554333
No 66
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.63 E-value=2.4e-09 Score=97.44 Aligned_cols=104 Identities=15% Similarity=0.050 Sum_probs=94.4
Q ss_pred HHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhc
Q 007653 124 QKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDL 203 (594)
Q Consensus 124 ~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~l 203 (594)
+.|.+++...|... .+++.++.+++..++|++|+..+++++.++|.++.+++++|.+|...|++++|+.+|
T Consensus 4 ~~~~~~l~~~p~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 74 (135)
T TIGR02552 4 ATLKDLLGLDSEQL---------EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAY 74 (135)
T ss_pred hhHHHHHcCChhhH---------HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999988874 368899999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCChHHHHHhHHHHHhhhccCCCCC
Q 007653 204 SNAHEVSPDDGTIADVLRDAKEILMKEDGHHGP 236 (594)
Q Consensus 204 ekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~ 236 (594)
++++.++|++...+..++.+....++.+.+...
T Consensus 75 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 107 (135)
T TIGR02552 75 ALAAALDPDDPRPYFHAAECLLALGEPESALKA 107 (135)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999999998888776654433
No 67
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.62 E-value=5.2e-09 Score=99.67 Aligned_cols=110 Identities=17% Similarity=0.076 Sum_probs=92.0
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~ 178 (594)
....+..+...|..++..|+|++|+..|.+++.+.++... ...+|.|+|.+|...|++++|+..|.+++.++|.
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD------RSYILYNIGLIHTSNGEHTKALEYYFQALERNPF 104 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 3445778999999999999999999999999988765321 1347899999999999999999999999999999
Q ss_pred chHHHHHhccchh-------hhhhHH-------HHhhhcccccccCCCCC
Q 007653 179 NVKALYRRGQAYK-------DIGRLE-------EAVSDLSNAHEVSPDDG 214 (594)
Q Consensus 179 ~~ka~~~rg~al~-------~lg~~~-------eAi~~lekAl~l~P~~~ 214 (594)
+...++++|.+|. .+|+++ +|+..|++++..+|.+.
T Consensus 105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 9999999999998 666666 56666667777787643
No 68
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.61 E-value=6.9e-09 Score=103.65 Aligned_cols=143 Identities=13% Similarity=-0.009 Sum_probs=113.2
Q ss_pred HHHHHhhhhcccccch---HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecc---
Q 007653 86 ATMRARIDAQMNYEFN---AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT--- 159 (594)
Q Consensus 86 ~aa~~~~~a~~~~~~~---~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl--- 159 (594)
+.+...+...+...+. ....+..+|..++..|+|++|+..|.++++..|+.+.. ..+++++|.||+..
T Consensus 50 ~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------~~a~~~~g~~~~~~~~~ 123 (235)
T TIGR03302 50 TEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA------DYAYYLRGLSNYNQIDR 123 (235)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch------HHHHHHHHHHHHHhccc
Confidence 3444444444444443 34678999999999999999999999999999987531 12567777777765
Q ss_pred -----ccchhhhhhcceeeeecccchHHH-----------------HHhccchhhhhhHHHHhhhcccccccCCCC---C
Q 007653 160 -----KQYDECIKVGSEVLAYDAKNVKAL-----------------YRRGQAYKDIGRLEEAVSDLSNAHEVSPDD---G 214 (594)
Q Consensus 160 -----g~y~eAi~~~~~AL~ldP~~~ka~-----------------~~rg~al~~lg~~~eAi~~lekAl~l~P~~---~ 214 (594)
+++++|++.|+++++.+|++..++ +.+|.+|...|++.+|+..|++++...|++ .
T Consensus 124 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 203 (235)
T TIGR03302 124 VDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATE 203 (235)
T ss_pred ccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchH
Confidence 899999999999999999986542 467888999999999999999999998765 4
Q ss_pred hHHHHHhHHHHHhhhccCCC
Q 007653 215 TIADVLRDAKEILMKEDGHH 234 (594)
Q Consensus 215 ~a~~~l~~a~~~l~~~~~a~ 234 (594)
+++..++.+...++++.++.
T Consensus 204 ~a~~~l~~~~~~lg~~~~A~ 223 (235)
T TIGR03302 204 EALARLVEAYLKLGLKDLAQ 223 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHH
Confidence 78889999988888765443
No 69
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.61 E-value=9.7e-09 Score=109.88 Aligned_cols=120 Identities=15% Similarity=0.134 Sum_probs=75.4
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch---
Q 007653 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV--- 180 (594)
Q Consensus 104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~--- 180 (594)
..+..+|..++..|+|++|+..|.++++..|... .++.+++.+|.+.|+|++|++.+.++++.+|.+.
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~---------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 178 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAE---------GALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE 178 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchH---------HHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH
Confidence 4556666667777777777777777766555442 2556666666666777777766666666655432
Q ss_pred --HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007653 181 --KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 232 (594)
Q Consensus 181 --ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~ 232 (594)
..++.+|.++...|++++|+.+|+++++++|++..++..++.+....++...
T Consensus 179 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 232 (389)
T PRK11788 179 IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAA 232 (389)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHH
Confidence 2445566666666677777777777666666666666666666555554443
No 70
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.61 E-value=2.2e-09 Score=85.53 Aligned_cols=64 Identities=28% Similarity=0.394 Sum_probs=59.1
Q ss_pred cCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007653 151 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214 (594)
Q Consensus 151 N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~ 214 (594)
.+|..|++.|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4577889999999999999999999999999999999999999999999999999999999874
No 71
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.60 E-value=9.2e-09 Score=102.75 Aligned_cols=118 Identities=17% Similarity=0.215 Sum_probs=103.3
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~ 178 (594)
....+..++.+|..++..|+|++|+..|++++...|..+. ...+++++|.+|++.++|++|+..|+++++++|+
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~ 102 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY------AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN 102 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence 3556778999999999999999999999999999987642 1236799999999999999999999999999998
Q ss_pred chH---HHHHhccchhhh--------hhHHHHhhhcccccccCCCCChHHHHHhH
Q 007653 179 NVK---ALYRRGQAYKDI--------GRLEEAVSDLSNAHEVSPDDGTIADVLRD 222 (594)
Q Consensus 179 ~~k---a~~~rg~al~~l--------g~~~eAi~~lekAl~l~P~~~~a~~~l~~ 222 (594)
++. +++.+|.++... |++++|+..|++++..+|++..++..+..
T Consensus 103 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 157 (235)
T TIGR03302 103 HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKR 157 (235)
T ss_pred CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHH
Confidence 887 799999999876 89999999999999999999776654443
No 72
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.59 E-value=3.9e-08 Score=115.42 Aligned_cols=108 Identities=7% Similarity=-0.033 Sum_probs=89.4
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka 182 (594)
...+..++..+...|++++|+..|++++...|.++. +++++|.++...|++++|++.++++++++|++..+
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~---------l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l 429 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG---------LRIDYASVLQARGWPRAAENELKKAEVLEPRNINL 429 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHH
Confidence 456677888888888888888888888888888754 78888888888888888888888888888888888
Q ss_pred HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHH
Q 007653 183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADV 219 (594)
Q Consensus 183 ~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~ 219 (594)
++.+|.++..+|+|++|+..++++++.+|+++.+...
T Consensus 430 ~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~ 466 (765)
T PRK10049 430 EVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRL 466 (765)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 8888888888888888888888888888888765443
No 73
>PRK15331 chaperone protein SicA; Provisional
Probab=98.59 E-value=7.8e-09 Score=97.39 Aligned_cols=121 Identities=12% Similarity=0.093 Sum_probs=106.4
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~ 178 (594)
..+..+.++..|..++..|+|++|...|+-...+++.++. .|..+|.|+..+++|++|+..|..+..++++
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~---------Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~ 103 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPD---------YTMGLAAVCQLKKQFQKACDLYAVAFTLLKN 103 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 4445677888999999999999999999999999888865 7899999999999999999999999999999
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
++..+|+.|.||..+|+.+.|+..|+.++. .|.+..++..-....+.+..
T Consensus 104 dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~ 153 (165)
T PRK15331 104 DYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKT 153 (165)
T ss_pred CCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999998 57777766665555555543
No 74
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.57 E-value=1.6e-08 Score=108.27 Aligned_cols=122 Identities=15% Similarity=0.027 Sum_probs=56.8
Q ss_pred HHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhh
Q 007653 87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166 (594)
Q Consensus 87 aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi 166 (594)
.+...+...+...+.....+..++..+.+.|+|++|+..|.++++..|..... ....+|.+++.+|.+.+++++|+
T Consensus 125 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 125 RAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV----EIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred HHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH----HHHHHHHHHHHHHHhCCCHHHHH
Confidence 33333333333333444445555555555555555555555555444332110 00112344455555555555555
Q ss_pred hhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007653 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212 (594)
Q Consensus 167 ~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~ 212 (594)
..|+++++++|++..+++.+|.+|...|++++|+..|++++..+|.
T Consensus 201 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 246 (389)
T PRK11788 201 ALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE 246 (389)
T ss_pred HHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence 5555555555555555555555555555555555555555544444
No 75
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.57 E-value=2.6e-08 Score=116.87 Aligned_cols=130 Identities=12% Similarity=0.056 Sum_probs=113.9
Q ss_pred HHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhh
Q 007653 88 MRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK 167 (594)
Q Consensus 88 a~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~ 167 (594)
+...+.......+..+..+..+|..+...|++.+|+.+|+++|+++|.++. ++.+++.++...+++++|+.
T Consensus 34 A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~la~~l~~~g~~~eA~~ 104 (765)
T PRK10049 34 VITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD---------YQRGLILTLADAGQYDEALV 104 (765)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHHHHHH
Confidence 334444444445566778999999999999999999999999999999854 77899999999999999999
Q ss_pred hcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653 168 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (594)
Q Consensus 168 ~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l 227 (594)
.++++++.+|+++. ++.+|.+|...|++++|+..|+++++++|++..++..++.+....
T Consensus 105 ~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~ 163 (765)
T PRK10049 105 KAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 99999999999999 999999999999999999999999999999999888887776543
No 76
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.55 E-value=2e-08 Score=100.33 Aligned_cols=127 Identities=15% Similarity=0.041 Sum_probs=116.0
Q ss_pred ccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee
Q 007653 96 MNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY 175 (594)
Q Consensus 96 ~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l 175 (594)
..+.......++.+|...++.|+|.+|+..+.++..+.|++.. +|.-+|.||.+.|++++|...|.+++++
T Consensus 93 ~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~---------~~~~lgaaldq~Gr~~~Ar~ay~qAl~L 163 (257)
T COG5010 93 AIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE---------AWNLLGAALDQLGRFDEARRAYRQALEL 163 (257)
T ss_pred hccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh---------hhhHHHHHHHHccChhHHHHHHHHHHHh
Confidence 3345666677778999999999999999999999999999954 8999999999999999999999999999
Q ss_pred cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653 176 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 231 (594)
Q Consensus 176 dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~ 231 (594)
.|..+.++.|+|..|+-.|+++.|..++..+...-+.+..+..++..+....++..
T Consensus 164 ~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 164 APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChH
Confidence 99999999999999999999999999999999888889999999999877776543
No 77
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.46 E-value=1.6e-08 Score=94.90 Aligned_cols=95 Identities=11% Similarity=0.045 Sum_probs=87.8
Q ss_pred ecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (594)
Q Consensus 148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l 227 (594)
..+.+|..++..|+|++|+..|+.++.+||.++.+||++|.|+..+|+|++|+..|.+|+.++|+|+....+++.|...+
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 44667777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCccchHH
Q 007653 228 MKEDGHHGPRGLLIE 242 (594)
Q Consensus 228 ~~~~~a~~~~~~~ie 242 (594)
++...+....+.+|.
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 988877777776663
No 78
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.43 E-value=5.1e-08 Score=99.98 Aligned_cols=110 Identities=13% Similarity=0.062 Sum_probs=95.3
Q ss_pred HHHHHHhcccc-cccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc---
Q 007653 103 AKMLKKQGNEL-YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--- 178 (594)
Q Consensus 103 a~~l~~~Gn~~-~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~--- 178 (594)
....+..+..+ ++.|+|++|+..|.+.+...|..+. ...+++++|.+|+..|+|++|+..|.++++..|+
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~------a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~ 215 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY------QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK 215 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 35667777765 6679999999999999999998741 1348899999999999999999999999988776
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHH
Q 007653 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD 218 (594)
Q Consensus 179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~ 218 (594)
.+++++.+|.+|..+|++++|+..|+++++..|+...+..
T Consensus 216 ~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 216 AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 5889999999999999999999999999999998765443
No 79
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.43 E-value=3.8e-08 Score=80.05 Aligned_cols=69 Identities=30% Similarity=0.497 Sum_probs=63.7
Q ss_pred ceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHh
Q 007653 153 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 221 (594)
Q Consensus 153 a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~ 221 (594)
..+|++.++|++|++++++++.++|+++..++.+|.+|..+|+|++|+.+|+++++++|++..+.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 456889999999999999999999999999999999999999999999999999999999887665543
No 80
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.41 E-value=1.2e-07 Score=97.22 Aligned_cols=137 Identities=12% Similarity=0.010 Sum_probs=115.6
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~ 163 (594)
+.+.+.+-|...++..+..++++--.|.-||-.++.+-|+.+|++.|+.--..|+ +|.|+|.|.+-.++|+
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe---------Lf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE---------LFCNIGLCCLYAQQID 375 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH---------HHhhHHHHHHhhcchh
Confidence 3445555566666666777777777888889999999999999999987766655 7999999999999999
Q ss_pred hhhhhcceeeeec--c-cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 164 ECIKVGSEVLAYD--A-KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 164 eAi~~~~~AL~ld--P-~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
-++..+.+|+..- | .-++.|||+|.+....|++.-|..+|+-||..||++.+++.+|+.++.+-+.
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~ 444 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGD 444 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc
Confidence 9999999998763 2 4578999999999999999999999999999999999999999987665543
No 81
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.40 E-value=1.4e-07 Score=107.67 Aligned_cols=138 Identities=19% Similarity=0.203 Sum_probs=123.4
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164 (594)
Q Consensus 85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e 164 (594)
+..|.+.|.+.++..+.+..+-.-.|.++...|++.+|+..|.++.+-...+ ..+|+|+|.||+.+|+|..
T Consensus 628 ~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~---------~dv~lNlah~~~e~~qy~~ 698 (1018)
T KOG2002|consen 628 QEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDF---------EDVWLNLAHCYVEQGQYRL 698 (1018)
T ss_pred HHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhC---------CceeeeHHHHHHHHHHHHH
Confidence 4566777888888899999999999999999999999999999998865555 3489999999999999999
Q ss_pred hhhhcceeeeec--ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653 165 CIKVGSEVLAYD--AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 231 (594)
Q Consensus 165 Ai~~~~~AL~ld--P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~ 231 (594)
||+.|+.+++-. .++...+..+|.++++.|.|.+|.+++.+|+.+.|.++.+..+++.+..++...-
T Consensus 699 AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~ 767 (1018)
T KOG2002|consen 699 AIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESI 767 (1018)
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHH
Confidence 999999998653 4678999999999999999999999999999999999999999999988887654
No 82
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.39 E-value=5.3e-08 Score=104.27 Aligned_cols=103 Identities=11% Similarity=0.083 Sum_probs=90.9
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~ 163 (594)
++..+...|...+...+..+..+.++|.+++..|+|.+|+..|.++|+++|.++. +|+++|.+|+.+|+|+
T Consensus 17 ~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~---------a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAK---------AYLRKGTACMKLEEYQ 87 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH---------HHHHHHHHHHHhCCHH
Confidence 3445566666666777778889999999999999999999999999999999854 8999999999999999
Q ss_pred hhhhhcceeeeecccchHHHHHhccchhhhhh
Q 007653 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR 195 (594)
Q Consensus 164 eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~ 195 (594)
+|+.+|+++++++|++..+++.++.|...+..
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999888777743
No 83
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.35 E-value=2.5e-08 Score=79.43 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=58.4
Q ss_pred HhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch
Q 007653 108 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180 (594)
Q Consensus 108 ~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ 180 (594)
.+|..++..|+|++|+.+|+++++..|.++. +++.+|.|++.+|+|++|+..|+++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPE---------AWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHH---------HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5788899999999999999999999999855 899999999999999999999999999999875
No 84
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.35 E-value=8.5e-08 Score=86.49 Aligned_cols=102 Identities=18% Similarity=0.193 Sum_probs=90.5
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc---
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--- 178 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~--- 178 (594)
....+-.+|..+...|+.+.|++.|.++|.+.|..+ ++|+||+.+|+-+|+.++|++++.+|+++.-+
T Consensus 42 ~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~ra---------SayNNRAQa~RLq~~~e~ALdDLn~AleLag~~tr 112 (175)
T KOG4555|consen 42 ASRELELKAIALAEAGDLDGALELFGQALCLAPERA---------SAYNNRAQALRLQGDDEEALDDLNKALELAGDQTR 112 (175)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccch---------HhhccHHHHHHHcCChHHHHHHHHHHHHhcCccch
Confidence 345567788889999999999999999999999985 49999999999999999999999999998654
Q ss_pred -chHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007653 179 -NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212 (594)
Q Consensus 179 -~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~ 212 (594)
-..+|..||..|..+|+.+.|..+|+.|.++-..
T Consensus 113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 3558999999999999999999999999887544
No 85
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.35 E-value=9e-08 Score=76.66 Aligned_cols=66 Identities=27% Similarity=0.361 Sum_probs=60.7
Q ss_pred eccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007653 157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 222 (594)
Q Consensus 157 ~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~ 222 (594)
++.|+|++|+..|++++..+|++..+++.++.||...|++++|...|++++..+|+++.++..+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 467999999999999999999999999999999999999999999999999999998887776654
No 86
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.34 E-value=6.8e-08 Score=99.31 Aligned_cols=92 Identities=18% Similarity=0.106 Sum_probs=84.4
Q ss_pred ccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 150 LNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 150 ~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
.-+|..|+++|+|++||++|.++|.++|.|+..|.+|+.+|+++++|..|..+|+.|+.++-.+.+++.+.+.+++.|+.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCCCCCccchH
Q 007653 230 EDGHHGPRGLLI 241 (594)
Q Consensus 230 ~~~a~~~~~~~i 241 (594)
-.++...++.++
T Consensus 181 ~~EAKkD~E~vL 192 (536)
T KOG4648|consen 181 NMEAKKDCETVL 192 (536)
T ss_pred HHHHHHhHHHHH
Confidence 777666555554
No 87
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=4.3e-07 Score=94.25 Aligned_cols=134 Identities=28% Similarity=0.347 Sum_probs=117.4
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccc----------cccceeeeeecccCceeeeccccchhhhhh
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS----------SEGRTLLLACSLNSMSCYLKTKQYDECIKV 168 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~----------~e~~~l~~~~~~N~a~~~~klg~y~eAi~~ 168 (594)
.....+..++.|+..++.++|..|...|.+++++....+. .....+...++.|++.|-++.+.|..|+..
T Consensus 218 ~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~ 297 (372)
T KOG0546|consen 218 ALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFR 297 (372)
T ss_pred hhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceec
Confidence 4445678889999999999999999999999986652211 124556778999999999999999999999
Q ss_pred cceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007653 169 GSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 232 (594)
Q Consensus 169 ~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~ 232 (594)
+..+++.++...++||+++.++..+.++++|+++++.+....|++..+...+..+...+.++++
T Consensus 298 ~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~ 361 (372)
T KOG0546|consen 298 TNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNR 361 (372)
T ss_pred cccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988888776653
No 88
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.30 E-value=3.7e-08 Score=101.38 Aligned_cols=128 Identities=18% Similarity=0.123 Sum_probs=94.1
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchH
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 181 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k 181 (594)
.+..+......+...++++++...+.++....+...+ ..+|..+|.+|.+.|++++|+.+|+++|+++|++..
T Consensus 109 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~ 181 (280)
T PF13429_consen 109 DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS-------ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD 181 (280)
T ss_dssp ---------H-HHHTT-HHHHHHHHHHHHH-T---T--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH
T ss_pred ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 3455666667788889999999999887754421111 347888999999999999999999999999999999
Q ss_pred HHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCC
Q 007653 182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGP 236 (594)
Q Consensus 182 a~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~ 236 (594)
++..++.++...|+++++...++......|+++.++..++.+...+++.+.+...
T Consensus 182 ~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~ 236 (280)
T PF13429_consen 182 ARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEY 236 (280)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccc
Confidence 9999999999999999988888888888899999999999999998876654433
No 89
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.29 E-value=3.7e-07 Score=84.89 Aligned_cols=99 Identities=22% Similarity=0.201 Sum_probs=84.1
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchH
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 181 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k 181 (594)
...+...++..++..|+|++|+..|.+++...+... +...++++++.|++..|+|++|+..++. +.-.+-.+.
T Consensus 47 a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~------l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~ 119 (145)
T PF09976_consen 47 AALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE------LKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKAL 119 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH------HHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHH
Confidence 366788899999999999999999999999764432 2244788999999999999999999976 444556677
Q ss_pred HHHHhccchhhhhhHHHHhhhccccc
Q 007653 182 ALYRRGQAYKDIGRLEEAVSDLSNAH 207 (594)
Q Consensus 182 a~~~rg~al~~lg~~~eAi~~lekAl 207 (594)
++..+|.+|...|++++|+..|++|+
T Consensus 120 ~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 120 AAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 89999999999999999999999885
No 90
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.28 E-value=1.7e-07 Score=100.95 Aligned_cols=69 Identities=10% Similarity=0.007 Sum_probs=63.8
Q ss_pred cceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH---HHHhccchhhhhhHHHHhhhccccccc
Q 007653 141 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA---LYRRGQAYKDIGRLEEAVSDLSNAHEV 209 (594)
Q Consensus 141 ~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka---~~~rg~al~~lg~~~eAi~~lekAl~l 209 (594)
...-...+|+|+|.+|+++|+|++|+..|++||+++|+++.+ ||++|.||..+|++++|+.+|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344446689999999999999999999999999999999965 999999999999999999999999997
No 91
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.26 E-value=4.9e-07 Score=97.22 Aligned_cols=119 Identities=18% Similarity=0.090 Sum_probs=58.4
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka 182 (594)
...++..+..++..|++++|+..+...+...|+++ .++.-++.++++.+++++|++.+++++.++|+.+..
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~---------~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l 376 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP---------YYLELAGDILLEANKAKEAIERLKKALALDPNSPLL 376 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHH
Confidence 33444444444555555555555555444444442 133334444555555555555555555555555555
Q ss_pred HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007653 183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 230 (594)
Q Consensus 183 ~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~ 230 (594)
.+++|.+|...|++.+|+..+...+.-+|+|+..|..|..++..++..
T Consensus 377 ~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 377 QLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence 555555555555555555555555555555555555555554444443
No 92
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.23 E-value=2.5e-07 Score=99.42 Aligned_cols=133 Identities=16% Similarity=0.115 Sum_probs=117.8
Q ss_pred HHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhh
Q 007653 87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166 (594)
Q Consensus 87 aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi 166 (594)
.+.+.++.-+...++++..+-..+.++++.+++++|++.|++++.++|..+ .+++|+|.+|++.|++.+|+
T Consensus 324 ~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~---------~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 324 EALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP---------LLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc---------HHHHHHHHHHHhcCChHHHH
Confidence 444555555557788899999999999999999999999999999999984 48899999999999999999
Q ss_pred hhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (594)
Q Consensus 167 ~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~ 228 (594)
..+.+.+.-+|+++..|..++.+|..+|+-.+|...+-..+.+.-+...++..+..++++.+
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~ 456 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVK 456 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999888877777777777766653
No 93
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.22 E-value=2e-07 Score=88.75 Aligned_cols=114 Identities=14% Similarity=0.056 Sum_probs=95.8
Q ss_pred hcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc---hHHHHH
Q 007653 109 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VKALYR 185 (594)
Q Consensus 109 ~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~---~ka~~~ 185 (594)
..+.+|-.+.|..+...+.+.++....... ..+|+++|.++...++|++|+..|++++.+.|+. +.+|++
T Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~ 77 (168)
T CHL00033 5 QRNDNFIDKTFTIVADILLRILPTTSGEKE-------AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYN 77 (168)
T ss_pred cccccccccccccchhhhhHhccCCchhHH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHH
Confidence 345677778888888888766655444432 5688999999999999999999999999887763 458999
Q ss_pred hccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 186 RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 186 rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
+|.+|...|++++|+.+|++++.++|.+...+..++.+...+++
T Consensus 78 lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~ 121 (168)
T CHL00033 78 IGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGE 121 (168)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999999888888888875553
No 94
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.22 E-value=7.8e-07 Score=96.97 Aligned_cols=132 Identities=14% Similarity=0.004 Sum_probs=106.3
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch
Q 007653 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180 (594)
Q Consensus 101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ 180 (594)
+.+..+...+..+...|++++|+..+.++++..|++.. .....-+...++..++...+++.++++++.+|+++
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~-------~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~ 333 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRA-------ISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKP 333 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCccc-------chhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCCh
Confidence 46788899999999999999999999999999888742 00012223333445788999999999999999999
Q ss_pred --HHHHHhccchhhhhhHHHHhhhcc--cccccCCCCChHHHHHhHHHHHhhhccCCCCCccch
Q 007653 181 --KALYRRGQAYKDIGRLEEAVSDLS--NAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL 240 (594)
Q Consensus 181 --ka~~~rg~al~~lg~~~eAi~~le--kAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~ 240 (594)
..+..+|.++++.|+|++|.++|+ ++++.+|++.. ...++.+..++++...+...+++.
T Consensus 334 ~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 334 KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888899999999999999999999 68889998766 448899988888766654444443
No 95
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.20 E-value=2.3e-07 Score=85.74 Aligned_cols=109 Identities=17% Similarity=0.251 Sum_probs=92.4
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchH
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 181 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k 181 (594)
.+..++..|...++.|+|.+|++.|+......|..+- -..+.+.++.+|++.++|++|+..+++-|+++|.|++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y------a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY------AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 3557899999999999999999999999888776542 2347789999999999999999999999999998865
Q ss_pred ---HHHHhccchhhhhh---------------HHHHhhhcccccccCCCCChH
Q 007653 182 ---ALYRRGQAYKDIGR---------------LEEAVSDLSNAHEVSPDDGTI 216 (594)
Q Consensus 182 ---a~~~rg~al~~lg~---------------~~eAi~~lekAl~l~P~~~~a 216 (594)
++|.+|.++..+.. ..+|+.+|++.+..-|+..-+
T Consensus 83 vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 83 VDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred ccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 79999999999877 777777777777777776543
No 96
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.17 E-value=5.4e-07 Score=97.14 Aligned_cols=102 Identities=14% Similarity=0.130 Sum_probs=77.1
Q ss_pred ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeee-eecccCceeeeccccchhhhhhcceeeeec
Q 007653 98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLL-ACSLNSMSCYLKTKQYDECIKVGSEVLAYD 176 (594)
Q Consensus 98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~-~~~~N~a~~~~klg~y~eAi~~~~~AL~ld 176 (594)
..++.+..+.++|..|++.|+|++|+.+|+++|+++|++.. . .+|+|+|.||.++|++++|+.++++||++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae-------A~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE-------AQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46778999999999999999999999999999999999853 1 359999999999999999999999999973
Q ss_pred ccchHHHHHhcc---chhhhhhHHHHhhhccccc
Q 007653 177 AKNVKALYRRGQ---AYKDIGRLEEAVSDLSNAH 207 (594)
Q Consensus 177 P~~~ka~~~rg~---al~~lg~~~eAi~~lekAl 207 (594)
+...+ +..... .+....+|++-++.+.++-
T Consensus 143 n~~f~-~i~~DpdL~plR~~pef~eLlee~rk~G 175 (453)
T PLN03098 143 NLKFS-TILNDPDLAPFRASPEFKELQEEARKGG 175 (453)
T ss_pred chhHH-HHHhCcchhhhcccHHHHHHHHHHHHhC
Confidence 22221 222222 2333445555555444443
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.17 E-value=7.4e-07 Score=94.23 Aligned_cols=107 Identities=11% Similarity=-0.042 Sum_probs=93.0
Q ss_pred cccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeec
Q 007653 97 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD 176 (594)
Q Consensus 97 ~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ld 176 (594)
...+.....+..+|..+...|+|++|+..|++++++.|.++ .++..++.+|+..|++++|+..+.+++.+.
T Consensus 108 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~---------~~~~~la~i~~~~g~~~eA~~~l~~~l~~~ 178 (355)
T cd05804 108 PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDA---------WAVHAVAHVLEMQGRFKEGIAFMESWRDTW 178 (355)
T ss_pred cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc---------HHHHHHHHHHHHcCCHHHHHHHHHhhhhcc
Confidence 34566667778889999999999999999999999999984 378899999999999999999999999988
Q ss_pred ccch----HHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007653 177 AKNV----KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212 (594)
Q Consensus 177 P~~~----ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~ 212 (594)
|..+ ..|+.++.+|...|++++|+..|++++...|.
T Consensus 179 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 179 DCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred CCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence 7432 45678999999999999999999999877763
No 98
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.15 E-value=4.3e-07 Score=73.69 Aligned_cols=84 Identities=32% Similarity=0.393 Sum_probs=77.0
Q ss_pred ecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (594)
Q Consensus 148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l 227 (594)
+++++|.+++..++|++|+..+.+++++.|.+..+++.+|.+|...+++++|+.+|++++.+.|.+..++..++.+....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999998888888887777
Q ss_pred hhcc
Q 007653 228 MKED 231 (594)
Q Consensus 228 ~~~~ 231 (594)
++..
T Consensus 82 ~~~~ 85 (100)
T cd00189 82 GKYE 85 (100)
T ss_pred HhHH
Confidence 6543
No 99
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.14 E-value=4.8e-07 Score=102.82 Aligned_cols=117 Identities=12% Similarity=0.086 Sum_probs=67.6
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka 182 (594)
+..+..++|.+|.+|++++|+..+.++|..+|..+. +|+.+|.||..+|+.++|+.....|-.++|.+...
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~---------ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~ 209 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPI---------AYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYEL 209 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchh---------hHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHH
Confidence 556666666666666666666666666666666633 55666666666655555555555555555555555
Q ss_pred HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653 183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (594)
Q Consensus 183 ~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~ 228 (594)
|.+++.....+|.++.|+-+|.+|++.+|.+.+...+...+..+.+
T Consensus 210 W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G 255 (895)
T KOG2076|consen 210 WKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTG 255 (895)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC
Confidence 5555555555555555555555555555555444444444433333
No 100
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.14 E-value=4.8e-07 Score=91.52 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=98.2
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc---h
Q 007653 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---V 180 (594)
Q Consensus 104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~---~ 180 (594)
+.+++.+..+++.|+|.+|+..|...|+..|+.+- ...+++++|.|++.+|+|++|...|..+++-.|++ +
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~------~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KAp 215 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY------TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAP 215 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc------cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCCh
Confidence 45899999999999999999999999999988752 35689999999999999999999999999887765 5
Q ss_pred HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHH
Q 007653 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD 218 (594)
Q Consensus 181 ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~ 218 (594)
++++-+|.++.++|+.++|...|+++++--|+.+.+..
T Consensus 216 dallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 216 DALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 67999999999999999999999999999998876544
No 101
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.11 E-value=3.1e-07 Score=73.53 Aligned_cols=67 Identities=25% Similarity=0.297 Sum_probs=59.3
Q ss_pred ccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhcc
Q 007653 113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQ 188 (594)
Q Consensus 113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~ 188 (594)
+++.|+|++|+..|++++..+|.+.. +++.++.||++.|+|++|...+.+++..+|+++.++.-++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~---------~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPE---------ARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHH---------HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 35789999999999999999999854 88999999999999999999999999999999877766543
No 102
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.11 E-value=5.4e-07 Score=91.48 Aligned_cols=124 Identities=14% Similarity=0.131 Sum_probs=102.6
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc--
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-- 179 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~-- 179 (594)
.++.++..|..++..|+|++|+..|++++...|..+. ...+.+++|.+|++.++|.+|+..+++.|+++|++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~------a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPY------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 4667889999999999999999999999999887753 13356899999999999999999999999999877
Q ss_pred -hHHHHHhccchhhhh------------------hHHHHhhhcccccccCCCC---ChHHHHHhHHHHHhhhcc
Q 007653 180 -VKALYRRGQAYKDIG------------------RLEEAVSDLSNAHEVSPDD---GTIADVLRDAKEILMKED 231 (594)
Q Consensus 180 -~ka~~~rg~al~~lg------------------~~~eAi~~lekAl~l~P~~---~~a~~~l~~a~~~l~~~~ 231 (594)
+.++|.+|.++..++ ...+|+..|++.+...|+. +++...+..++.++.+++
T Consensus 105 ~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e 178 (243)
T PRK10866 105 IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE 178 (243)
T ss_pred hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH
Confidence 457999998865543 2467999999999999986 467777777777776543
No 103
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.10 E-value=2.6e-06 Score=99.99 Aligned_cols=178 Identities=8% Similarity=-0.023 Sum_probs=129.6
Q ss_pred HhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHH-hhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccch
Q 007653 42 IATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFS 120 (594)
Q Consensus 42 ~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~-~~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~ 120 (594)
+++...++.+.+.....++++....|........- .......+...+...+.+.+...+.....+..+|..+...|+|+
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 36666777777777777777777777753211100 00011133344555555555444555667777788999999999
Q ss_pred hHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHh
Q 007653 121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV 200 (594)
Q Consensus 121 eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi 200 (594)
+|++.|+++++.+|.++. ++.-++.+|...+++++|++.+.+++.++|.+... ..++.++...+++.+|+
T Consensus 120 ~Aiely~kaL~~dP~n~~---------~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL 189 (822)
T PRK14574 120 QALALWQSSLKKDPTNPD---------LISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHHHHHHHHHhhCCCCHH---------HHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHH
Confidence 999999999999999965 56677899999999999999999999999985554 44455555577787799
Q ss_pred hhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 201 SDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 201 ~~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
..|+++++++|++.++...+-.+...++-
T Consensus 190 ~~~ekll~~~P~n~e~~~~~~~~l~~~~~ 218 (822)
T PRK14574 190 QASSEAVRLAPTSEEVLKNHLEILQRNRI 218 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999887777766555443
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.09 E-value=5e-07 Score=100.74 Aligned_cols=124 Identities=12% Similarity=0.033 Sum_probs=108.2
Q ss_pred chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc
Q 007653 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 179 (594)
Q Consensus 100 ~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~ 179 (594)
...+.+.+..|+..+.+++|.++..+++..++++|-... .|+++|.|+++++++..|+.+|.+.+.++|++
T Consensus 482 ~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~---------~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~ 552 (777)
T KOG1128|consen 482 YISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG---------TWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN 552 (777)
T ss_pred hhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchh---------HHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc
Confidence 334556777888888899999999999999999888744 89999999999999999999999999999999
Q ss_pred hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007653 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 232 (594)
Q Consensus 180 ~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~ 232 (594)
..+|.|++.+|..+++..+|...+.+|++.+-++..+|.++-.+...++....
T Consensus 553 ~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~ed 605 (777)
T KOG1128|consen 553 AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFED 605 (777)
T ss_pred hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHH
Confidence 99999999999999999999999999999998888888888777666555443
No 105
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.09 E-value=4.7e-07 Score=73.55 Aligned_cols=69 Identities=14% Similarity=0.132 Sum_probs=62.6
Q ss_pred cccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhc
Q 007653 110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRG 187 (594)
Q Consensus 110 Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg 187 (594)
.+.+++.++|++|+.++++++.++|.++ .+|..+|.||+++|+|.+|+.+++++++++|++..+...++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~---------~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDP---------ELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccc---------hhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 4568899999999999999999999985 48999999999999999999999999999999988766554
No 106
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.09 E-value=3.9e-06 Score=93.98 Aligned_cols=126 Identities=10% Similarity=0.029 Sum_probs=96.2
Q ss_pred CChHHHHHHHHhhhhcccccchHHHHHHHhccccccc--------ccchhHHHHHHHhhhc--cccccccccceeeeeec
Q 007653 80 ASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE--------GRFSNALQKYLLAKKN--LQGIHSSEGRTLLLACS 149 (594)
Q Consensus 80 ~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~--------g~y~eAi~~Y~kAL~l--~p~~~~~e~~~l~~~~~ 149 (594)
...+++..+...+++.++..++.+.++-.++..+... .+...+.....+++.+ ++..+ .+|
T Consensus 353 ~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~---------~~~ 423 (517)
T PRK10153 353 GDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLP---------RIY 423 (517)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCCh---------HHH
Confidence 3555666677777777777777666666655544332 2344556666666554 33332 256
Q ss_pred ccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653 150 LNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215 (594)
Q Consensus 150 ~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~ 215 (594)
.-+|..+...|++++|...+++|+.++| ++.+|+.+|.+|...|++++|++.|++|+.++|.++.
T Consensus 424 ~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 424 EILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 6778888888999999999999999999 5889999999999999999999999999999999875
No 107
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.08 E-value=8.6e-07 Score=88.78 Aligned_cols=128 Identities=16% Similarity=0.167 Sum_probs=108.2
Q ss_pred hcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceee
Q 007653 94 AQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL 173 (594)
Q Consensus 94 a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL 173 (594)
+....+++.... .+..+.++..|+-+.++.+..+++...|.+.. +..-++..+++.|+|.+|+..+.++.
T Consensus 58 ~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~---------ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 58 AAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRE---------LLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred HHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHH---------HHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 334445655666 77888889999999988888887777777643 33337888899999999999999999
Q ss_pred eecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653 174 AYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 231 (594)
Q Consensus 174 ~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~ 231 (594)
.++|+++++|.-+|.+|.++|++++|...|.+++++.|.++.+..+++-....-++.+
T Consensus 128 ~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~ 185 (257)
T COG5010 128 RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLE 185 (257)
T ss_pred ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHH
Confidence 9999999999999999999999999999999999999999999999998766665544
No 108
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.06 E-value=1e-06 Score=98.87 Aligned_cols=110 Identities=18% Similarity=0.168 Sum_probs=91.8
Q ss_pred cccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhh--hcceeee
Q 007653 97 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK--VGSEVLA 174 (594)
Q Consensus 97 ~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~--~~~~AL~ 174 (594)
...+-.+..|+..|..+..+|++.+|.+.|..|+.++|+++ .+...+|.||.+.|+..-|.. ....+++
T Consensus 678 ~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv---------~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 678 KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV---------PSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc---------HHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 34456677788888888888888999999999988888884 467788888888887777777 8888888
Q ss_pred ecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653 175 YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215 (594)
Q Consensus 175 ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~ 215 (594)
+||.|.++||.+|.++..+|+.++|.++|..|+.+++.++.
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 89999999999999999999999999999888888887764
No 109
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.06 E-value=1.9e-06 Score=89.07 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=69.1
Q ss_pred eccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653 157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 233 (594)
Q Consensus 157 ~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a 233 (594)
+..|.+++||+.|+.+|+++|..+..|-.|+.+|+.+++...|+.+|..|++++|+...-+...+.++..++....+
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 34577999999999999999999999999999999999999999999999999999988888888887777765543
No 110
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.06 E-value=7e-07 Score=104.70 Aligned_cols=126 Identities=13% Similarity=0.040 Sum_probs=100.7
Q ss_pred hHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecccc
Q 007653 82 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ 161 (594)
Q Consensus 82 ~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~ 161 (594)
..++..|...+.+.++..+..+........++...|++++|+.++++++ +|.... ...+..+|.+|...|+
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~-------~~~llalA~ly~~~gd 117 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNIS-------SRGLASAARAYRNEKR 117 (822)
T ss_pred CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCC-------HHHHHHHHHHHHHcCC
Confidence 3344566677777777777765444466666777799999999999999 343321 2233444779999999
Q ss_pred chhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChH
Q 007653 162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 216 (594)
Q Consensus 162 y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a 216 (594)
|++|++.|+++++++|+++.+++.++.+|...+++++|+..+++++..+|++...
T Consensus 118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~ 172 (822)
T PRK14574 118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY 172 (822)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH
Confidence 9999999999999999999999999999999999999999999999999986543
No 111
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.05 E-value=5.9e-07 Score=88.59 Aligned_cols=123 Identities=16% Similarity=0.213 Sum_probs=97.2
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch-
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV- 180 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~- 180 (594)
.++.++..|..++..|+|.+|+..|++.+...|..+. ...+.+.++.+|++.++|.+|+..+++.|+..|+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY------APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 3568999999999999999999999999999887653 134778999999999999999999999999999865
Q ss_pred --HHHHHhccchhhhh-----------hHHHHhhhcccccccCCCCC---hHHHHHhHHHHHhhhc
Q 007653 181 --KALYRRGQAYKDIG-----------RLEEAVSDLSNAHEVSPDDG---TIADVLRDAKEILMKE 230 (594)
Q Consensus 181 --ka~~~rg~al~~lg-----------~~~eAi~~lekAl~l~P~~~---~a~~~l~~a~~~l~~~ 230 (594)
.++|.+|.+++.+. ...+|+..|+..+...|+.+ .+...+..+...+.++
T Consensus 78 ~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~ 143 (203)
T PF13525_consen 78 ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH 143 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH
Confidence 58999999976654 44589999999999999875 4556666776666543
No 112
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.05 E-value=6.4e-07 Score=85.71 Aligned_cols=86 Identities=15% Similarity=0.148 Sum_probs=77.5
Q ss_pred eeecccCceeeeccccchhhhhhcceeeeecccc---hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007653 146 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 222 (594)
Q Consensus 146 ~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~---~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~ 222 (594)
..+++++|.+|...|+|++|+.+|.+++++.|+. +.+++++|.+|..+|++++|+..|++++.++|++...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 5578999999999999999999999999887763 5799999999999999999999999999999999999888888
Q ss_pred HHHHhhhcc
Q 007653 223 AKEILMKED 231 (594)
Q Consensus 223 a~~~l~~~~ 231 (594)
+...+++..
T Consensus 115 ~~~~~g~~~ 123 (172)
T PRK02603 115 IYHKRGEKA 123 (172)
T ss_pred HHHHcCChH
Confidence 887776543
No 113
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=1.6e-06 Score=86.44 Aligned_cols=120 Identities=15% Similarity=0.051 Sum_probs=77.9
Q ss_pred chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc
Q 007653 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 179 (594)
Q Consensus 100 ~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~ 179 (594)
+......+-.|..+-..|+|++|+++|...|+-+|.+. ..|...-++...+|+-.+||+....-++.-+.+
T Consensus 83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~---------v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D 153 (289)
T KOG3060|consen 83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDT---------VIRKRKLAILKAQGKNLEAIKELNEYLDKFMND 153 (289)
T ss_pred CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchh---------HHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc
Confidence 55556667777788888888888888888888887763 244444444445555556666666666666666
Q ss_pred hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (594)
Q Consensus 180 ~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~ 228 (594)
.++|..++..|...|+|++|.-+|+..+-+.|.++-...+++++..-++
T Consensus 154 ~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 154 QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG 202 (289)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh
Confidence 6666666666666666666666666666666666666666655555444
No 114
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.02 E-value=3.3e-06 Score=86.74 Aligned_cols=130 Identities=14% Similarity=0.028 Sum_probs=112.2
Q ss_pred HHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhh
Q 007653 88 MRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK 167 (594)
Q Consensus 88 a~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~ 167 (594)
+.--|+..++--...++.+.++|.+++-.++|+-++..|.+|+........ ...+|+|++.+..-.|++.-|.+
T Consensus 343 AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~------aaDvWYNlg~vaV~iGD~nlA~r 416 (478)
T KOG1129|consen 343 ALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQ------AADVWYNLGFVAVTIGDFNLAKR 416 (478)
T ss_pred HHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcch------hhhhhhccceeEEeccchHHHHH
Confidence 334455555555666889999999999999999999999999987653321 25699999999999999999999
Q ss_pred hcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007653 168 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 223 (594)
Q Consensus 168 ~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a 223 (594)
+++-+|.-|+++..++.|+|..-.+.|+.++|...|..|-.+.|+-.+...+++.+
T Consensus 417 cfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 417 CFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred HHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence 99999999999999999999999999999999999999999999987777766554
No 115
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.01 E-value=5.2e-07 Score=81.59 Aligned_cols=99 Identities=21% Similarity=0.085 Sum_probs=86.3
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc---ch
Q 007653 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK---NV 180 (594)
Q Consensus 104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~---~~ 180 (594)
+.+++.+..+-..|+.++|+.+|++++......+. ...+++++|.+|..+|++++|+..+++++.-.|+ +.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~------~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~ 75 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGAD------RRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNA 75 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccH
Confidence 46788889999999999999999999996544321 2348899999999999999999999999998888 88
Q ss_pred HHHHHhccchhhhhhHHHHhhhcccccc
Q 007653 181 KALYRRGQAYKDIGRLEEAVSDLSNAHE 208 (594)
Q Consensus 181 ka~~~rg~al~~lg~~~eAi~~lekAl~ 208 (594)
...+.++.++..+|++++|+..+-.++.
T Consensus 76 ~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 76 ALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888999999999999999999987764
No 116
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=6.5e-06 Score=82.22 Aligned_cols=136 Identities=13% Similarity=0.058 Sum_probs=116.6
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164 (594)
Q Consensus 85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e 164 (594)
...|..-|..-+...+...-.++.+--++..+|+-.+||+...+.++.++.+++ +|.-++..|+..++|++
T Consensus 102 ~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~E---------AW~eLaeiY~~~~~f~k 172 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQE---------AWHELAEIYLSEGDFEK 172 (289)
T ss_pred hhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHH---------HHHHHHHHHHhHhHHHH
Confidence 345556666666666766667777777778888889999999999999999976 89999999999999999
Q ss_pred hhhhcceeeeecccchHHHHHhccchhhhh---hHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIG---RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 165 Ai~~~~~AL~ldP~~~ka~~~rg~al~~lg---~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
|+-+|++.+-+.|.++-++-++|.+++.+| +++-|.++|+++++++|.+...+..+-.+...+.+
T Consensus 173 A~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~ 240 (289)
T KOG3060|consen 173 AAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQ 240 (289)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998776 57779999999999999888888888777777653
No 117
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.99 E-value=3.5e-06 Score=82.35 Aligned_cols=108 Identities=20% Similarity=0.096 Sum_probs=101.5
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~ 178 (594)
....+..+++.|+.|-..|-+.-|.-.|++++.+.|..++ +++-+|..+...|+|+.|.+.|+.++++||.
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~---------vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~ 131 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPE---------VFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHH---------HHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence 4456788999999999999999999999999999999976 7888999999999999999999999999999
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215 (594)
Q Consensus 179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~ 215 (594)
+--++.|||.+++..|||.-|.+++.+-..-||+++-
T Consensus 132 y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 132 YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 9999999999999999999999999999999999874
No 118
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.99 E-value=2.8e-06 Score=97.40 Aligned_cols=138 Identities=17% Similarity=0.120 Sum_probs=110.5
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164 (594)
Q Consensus 85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e 164 (594)
+..+...+.+....+...+..+..+++-+|-.|+|..+...+..++....+.+ +..-.|+++|.+|..+|+|++
T Consensus 252 ~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~------~~aes~Y~~gRs~Ha~Gd~ek 325 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKS------IKAESFYQLGRSYHAQGDFEK 325 (1018)
T ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH------HHHHHHHHHHHHHHhhccHHH
Confidence 33444555555666777888888899999999999999999888887653322 223357889999999999999
Q ss_pred hhhhcceeeeecccc-hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653 165 CIKVGSEVLAYDAKN-VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (594)
Q Consensus 165 Ai~~~~~AL~ldP~~-~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~ 228 (594)
|..+|.+++..++++ .-.++.+|+.|...|+++.|+.+|++.++..|++.+....|+.+.....
T Consensus 326 A~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 326 AFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred HHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence 999999999999888 7788889999999999999999999999999999888888888766653
No 119
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.98 E-value=6.1e-07 Score=99.34 Aligned_cols=148 Identities=18% Similarity=0.129 Sum_probs=118.8
Q ss_pred ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee--
Q 007653 98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-- 175 (594)
Q Consensus 98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l-- 175 (594)
..+..+..+...|..|...++|.+|+..|.+|+.+....-. +.++-.+.++.|++.+|++.|+|++|..+|++|++|
T Consensus 236 ~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G-~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~ 314 (508)
T KOG1840|consen 236 KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG-EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYE 314 (508)
T ss_pred cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence 35666677778999999999999999999999987653221 223334668899999999999999999999999876
Q ss_pred ------cccchHHHHHhccchhhhhhHHHHhhhcccccccCC-----CC---ChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653 176 ------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP-----DD---GTIADVLRDAKEILMKEDGHHGPRGLLI 241 (594)
Q Consensus 176 ------dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P-----~~---~~a~~~l~~a~~~l~~~~~a~~~~~~~i 241 (594)
.|.-+..+.+.+.++...++|++|+.+|.+++++.- ++ ..++.+++.+....++++++.+-++..|
T Consensus 315 ~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai 394 (508)
T KOG1840|consen 315 KLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAI 394 (508)
T ss_pred HhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 356677899999999999999999999999988742 23 4677888888888888887766666666
Q ss_pred HHHHH
Q 007653 242 EEITE 246 (594)
Q Consensus 242 ee~~e 246 (594)
+...+
T Consensus 395 ~~~~~ 399 (508)
T KOG1840|consen 395 QILRE 399 (508)
T ss_pred HHHHh
Confidence 54443
No 120
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.94 E-value=1e-06 Score=84.06 Aligned_cols=98 Identities=21% Similarity=0.189 Sum_probs=77.7
Q ss_pred chhHHHHHHHhhhccccccccccceeeeeecccCceeeecc----------ccchhhhhhcceeeeecccchHHHHHhcc
Q 007653 119 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT----------KQYDECIKVGSEVLAYDAKNVKALYRRGQ 188 (594)
Q Consensus 119 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl----------g~y~eAi~~~~~AL~ldP~~~ka~~~rg~ 188 (594)
|+.|.+.|+.....+|.+++ .++|-|.+++.+ .-|++|+.-|++||.|+|+..++++.+|.
T Consensus 7 FE~ark~aea~y~~nP~Dad---------nL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDAD---------NLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HH---------HHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHH---------HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 67788899999999998854 566666666655 34678999999999999999999999999
Q ss_pred chhhhhh-----------HHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007653 189 AYKDIGR-----------LEEAVSDLSNAHEVSPDDGTIADVLRDAKE 225 (594)
Q Consensus 189 al~~lg~-----------~~eAi~~lekAl~l~P~~~~a~~~l~~a~~ 225 (594)
||..++. |++|..+|++|..++|+|...+.-|+.+..
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 9998775 888999999999999999988888877743
No 121
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.94 E-value=4.5e-06 Score=95.08 Aligned_cols=119 Identities=13% Similarity=0.137 Sum_probs=110.4
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~ 163 (594)
+++.|..-+...++..+..+.+|+.+|.+|-.+|+..+++..+..|-.++|.+++ .|..++....++|.+.
T Consensus 154 ~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e---------~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 154 DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE---------LWKRLADLSEQLGNIN 224 (895)
T ss_pred CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH---------HHHHHHHHHHhcccHH
Confidence 4455666666667778888999999999999999999999999999999999965 8999999999999999
Q ss_pred hhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007653 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 211 (594)
Q Consensus 164 eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P 211 (594)
+|+-+|.+||.++|.+.+.++++...|.+.|++..|...|.+.+.++|
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999999999999
No 122
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.92 E-value=4.6e-06 Score=90.69 Aligned_cols=128 Identities=20% Similarity=0.064 Sum_probs=103.4
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~ 178 (594)
.++.+..+...+..+...|++++|.....++++..+ ++. +..-++. +..++++++++.+++.++.+|+
T Consensus 259 ~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~---------l~~l~~~--l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 259 TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DER---------LVLLIPR--LKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHH---------HHHHHhh--ccCCChHHHHHHHHHHHhhCCC
Confidence 345677888889999999999999999999998433 321 1112222 2459999999999999999999
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccc
Q 007653 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGL 239 (594)
Q Consensus 179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~ 239 (594)
++..++.+|.++...++|++|.++|+++++++|++.. +..+..+.++.++.+.+...++.
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999755 45788888888776655444443
No 123
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.90 E-value=8.1e-07 Score=78.03 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=75.0
Q ss_pred ecccCceeeeccccchhhhhhcceeeeecccc---hHHHHHhccchhhhhhHHHHhhhcccccccCCCC---ChHHHHHh
Q 007653 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD---GTIADVLR 221 (594)
Q Consensus 148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~---~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~---~~a~~~l~ 221 (594)
.++++|.++.+.|+|++|+..|.+++..+|++ +.+++.+|.++...|++++|+..|++++..+|++ ..++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 57888999999999999999999999999877 6799999999999999999999999999999986 45677778
Q ss_pred HHHHHhhhccCC
Q 007653 222 DAKEILMKEDGH 233 (594)
Q Consensus 222 ~a~~~l~~~~~a 233 (594)
.+...+++...+
T Consensus 84 ~~~~~~~~~~~A 95 (119)
T TIGR02795 84 MSLQELGDKEKA 95 (119)
T ss_pred HHHHHhCChHHH
Confidence 887776654443
No 124
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.89 E-value=7.1e-06 Score=90.71 Aligned_cols=147 Identities=16% Similarity=0.078 Sum_probs=117.9
Q ss_pred hhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceee
Q 007653 77 LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY 156 (594)
Q Consensus 77 ~~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~ 156 (594)
+......++..-.+-+++.+...++..+.+--+|..+...|+-++|..+...++..++..+ .||--+|.++
T Consensus 15 lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~---------vCwHv~gl~~ 85 (700)
T KOG1156|consen 15 LKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH---------VCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccc---------hhHHHHHHHH
Confidence 3333444445555556666667788888888888888888888888888888888877773 4888888888
Q ss_pred eccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007653 157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 232 (594)
Q Consensus 157 ~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~ 232 (594)
+..++|++||.+|+.||.++|+|...|+-++....++++|+-....-.+.+++.|.+..-|..+..+...++.+..
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888888888887777654
No 125
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.86 E-value=3.4e-07 Score=75.56 Aligned_cols=64 Identities=22% Similarity=0.344 Sum_probs=56.5
Q ss_pred eeecccCceeeeccccchhhhhhcceeeeec-------ccchHHHHHhccchhhhhhHHHHhhhccccccc
Q 007653 146 LACSLNSMSCYLKTKQYDECIKVGSEVLAYD-------AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 209 (594)
Q Consensus 146 ~~~~~N~a~~~~klg~y~eAi~~~~~AL~ld-------P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l 209 (594)
+.+|.|+|.+|+.+|+|++|+.+|++++++. |..+.+++++|.+|..+|++++|+++|++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4578999999999999999999999999762 345889999999999999999999999999865
No 126
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.83 E-value=5.1e-06 Score=89.78 Aligned_cols=109 Identities=20% Similarity=0.152 Sum_probs=98.2
Q ss_pred ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc---cchhhhhhcceeee
Q 007653 98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK---QYDECIKVGSEVLA 174 (594)
Q Consensus 98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg---~y~eAi~~~~~AL~ 174 (594)
..+..++..+..||..+..+....||..|.+++...|.. ..+|.|++.++++.+ +.-.|+.+|..||+
T Consensus 369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~---------~~~l~nraa~lmkRkW~~d~~~AlrDch~Alr 439 (758)
T KOG1310|consen 369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDA---------IYLLENRAAALMKRKWRGDSYLALRDCHVALR 439 (758)
T ss_pred hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccch---------hHHHHhHHHHHHhhhccccHHHHHHhHHhhcc
Confidence 456778899999999999999999999999999988877 569999999998864 67789999999999
Q ss_pred ecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653 175 YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215 (594)
Q Consensus 175 ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~ 215 (594)
+||...++||+++.++..++++.+|+.+...+....|.+..
T Consensus 440 ln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 440 LNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred CChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence 99999999999999999999999999998888878885543
No 127
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.81 E-value=1.4e-05 Score=88.39 Aligned_cols=119 Identities=14% Similarity=0.053 Sum_probs=108.7
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHH
Q 007653 105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY 184 (594)
Q Consensus 105 ~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~ 184 (594)
.++.....+|..++|...+...+..|.-.|..++ ...-.|..+..+|+-++|...+..++..|+.+..+|+
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHge---------slAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwH 79 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGE---------SLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWH 79 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccch---------hHHhccchhhcccchHHHHHHHHHHhccCcccchhHH
Confidence 5666777789999999999999999998888765 4566788888999999999999999999999999999
Q ss_pred HhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007653 185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 232 (594)
Q Consensus 185 ~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~ 232 (594)
.+|..+..-++|++|+++|+.|+.++|+|..++.-+..++.+++++++
T Consensus 80 v~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 80 VLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999988875
No 128
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.79 E-value=6.7e-06 Score=86.94 Aligned_cols=141 Identities=11% Similarity=-0.041 Sum_probs=90.6
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhc-cccccccccceeeeeecccCceeeeccccc
Q 007653 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKN-LQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l-~p~~~~~e~~~l~~~~~~N~a~~~~klg~y 162 (594)
+++.+...+.+.+...+.....+.. +..++..+++..+...+.+++.. .+..+ ....++.+++.++...|+|
T Consensus 58 ~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~a~~~~~~G~~ 130 (355)
T cd05804 58 DLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENP------DYWYLLGMLAFGLEEAGQY 130 (355)
T ss_pred CHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCC------CcHHHHHHHHHHHHHcCCH
Confidence 4445555566666666665555554 44444444444333334343321 11111 1133456778888889999
Q ss_pred hhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChH----HHHHhHHHHHhhhcc
Q 007653 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI----ADVLRDAKEILMKED 231 (594)
Q Consensus 163 ~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a----~~~l~~a~~~l~~~~ 231 (594)
++|+..|+++++++|+++.+++.+|.+|...|++++|+.+|++++.+.|.++.. +..+..+....++..
T Consensus 131 ~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~ 203 (355)
T cd05804 131 DRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYE 203 (355)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999899999999999999999999999999888754332 234555555554433
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.79 E-value=6.2e-06 Score=96.41 Aligned_cols=144 Identities=10% Similarity=0.029 Sum_probs=87.8
Q ss_pred cCCChhHHHHHHHHhhcC-ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccccc
Q 007653 63 THTPPEEVAEIGEKLANA-SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG 141 (594)
Q Consensus 63 ~~~~pee~~~~~~~~~~~-~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~ 141 (594)
.+.+|.......+-+... ...+++.+.......+.+.++....++-.|..++..+++.++... .++...+....-..
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 445555555544444433 334455566556666666777777777777777777777666665 55555554421111
Q ss_pred ceeee----------eecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhccccccc
Q 007653 142 RTLLL----------ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 209 (594)
Q Consensus 142 ~~l~~----------~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l 209 (594)
.+... .+++.+|.||-++|++++|...|+++|++||+|+.++.++|..|... ++++|+.++.+|+..
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 11111 35556677777777777777777777777777777777777777766 777777777777665
No 130
>PRK11906 transcriptional regulator; Provisional
Probab=97.75 E-value=1.4e-05 Score=86.46 Aligned_cols=129 Identities=12% Similarity=-0.055 Sum_probs=107.7
Q ss_pred hhcCChHHHHHHHHhhhhcc---cccchHHHHHHHhcccccc---------cccchhHHHHHHHhhhcccccccccccee
Q 007653 77 LANASPEEIATMRARIDAQM---NYEFNAAKMLKKQGNELYS---------EGRFSNALQKYLLAKKNLQGIHSSEGRTL 144 (594)
Q Consensus 77 ~~~~~~~el~aa~~~~~a~~---~~~~~~a~~l~~~Gn~~~~---------~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l 144 (594)
++...++..+++..-+.+.+ ...+..+.+|.-++.+++. ...-.+|+++-.+|++++|.++.
T Consensus 266 ~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~------ 339 (458)
T PRK11906 266 LYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGK------ 339 (458)
T ss_pred hhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHH------
Confidence 45556667777777777777 6677767666666655432 34456889999999999999964
Q ss_pred eeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007653 145 LLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214 (594)
Q Consensus 145 ~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~ 214 (594)
++..+|.++.-.++++.|+..+++|+.++|+++.+||.+|.++...|+.++|++.+++|++++|...
T Consensus 340 ---a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 340 ---ILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred ---HHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 7888888888889999999999999999999999999999999999999999999999999999753
No 131
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.75 E-value=8.5e-07 Score=73.13 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=60.5
Q ss_pred chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee
Q 007653 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY 175 (594)
Q Consensus 100 ~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l 175 (594)
+..+..+.++|.+++..|+|++|+.+|++++++...... .....+.++.|+|.||..+|+|++|++.+++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--DHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 355778999999999999999999999999987433321 12234678999999999999999999999999865
No 132
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=2.6e-05 Score=82.39 Aligned_cols=128 Identities=14% Similarity=0.101 Sum_probs=90.8
Q ss_pred HHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhh
Q 007653 87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166 (594)
Q Consensus 87 aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi 166 (594)
.+..-..+.++.+++..+++.-+|+.+...++.++|+..|+.|+.+.|+. ..+|--+-.||+..++++||.
T Consensus 318 rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r---------L~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 318 RALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR---------LEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred HHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh---------HHHHHHHHHHHHhhchHHHHH
Confidence 33444444555677788899999999999999999999999999998887 347888888888888888887
Q ss_pred hhcceeeeecccchHHHHHhc-cchh-hhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007653 167 KVGSEVLAYDAKNVKALYRRG-QAYK-DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 223 (594)
Q Consensus 167 ~~~~~AL~ldP~~~ka~~~rg-~al~-~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a 223 (594)
.....+++.-|.+++++-..| .++. .----++|.+.|+++|++.|.+..+...+.++
T Consensus 389 ~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL 447 (564)
T KOG1174|consen 389 ALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAEL 447 (564)
T ss_pred HHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHH
Confidence 777666666666666666665 3332 22334566666677777776665555444444
No 133
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.74 E-value=1.4e-05 Score=91.84 Aligned_cols=159 Identities=14% Similarity=0.027 Sum_probs=125.5
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccc-----------------------
Q 007653 83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS----------------------- 139 (594)
Q Consensus 83 ~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~----------------------- 139 (594)
....-+...+.+.++..+.-+..+--+|..|...-+...|..+|.+|+++++.+...
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 345556666777777777788888888888877778888888888888888766430
Q ss_pred ----ccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653 140 ----EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215 (594)
Q Consensus 140 ----e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~ 215 (594)
.......-.|..||..|++-+++..|+.+++.|++.+|.+..+|.-+|.+|...|+|..|++.|.+|..++|.+.-
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 0011122356679999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHhHHHHHhhhccCCCCCccchH
Q 007653 216 IADVLRDAKEILMKEDGHHGPRGLLI 241 (594)
Q Consensus 216 a~~~l~~a~~~l~~~~~a~~~~~~~i 241 (594)
.+......+...++++++....+.++
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 77777777777777776555544444
No 134
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.73 E-value=5.4e-06 Score=80.11 Aligned_cols=89 Identities=19% Similarity=0.151 Sum_probs=78.0
Q ss_pred ceeeeccccchhhhhhcceeeeecccc-----hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653 153 MSCYLKTKQYDECIKVGSEVLAYDAKN-----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (594)
Q Consensus 153 a~~~~klg~y~eAi~~~~~AL~ldP~~-----~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l 227 (594)
|.-+++-|+|++|...|.+||.+.|.. ...|.+||.|+..++.++.||.+|.+|+++.|.+..+..+...+++++
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 344677899999999999999999864 458999999999999999999999999999999999999999999998
Q ss_pred hhccCCCCCccchH
Q 007653 228 MKEDGHHGPRGLLI 241 (594)
Q Consensus 228 ~~~~~a~~~~~~~i 241 (594)
..+..+...+.+++
T Consensus 182 ek~eealeDyKki~ 195 (271)
T KOG4234|consen 182 EKYEEALEDYKKIL 195 (271)
T ss_pred hhHHHHHHHHHHHH
Confidence 87777776666554
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.72 E-value=6.6e-06 Score=96.20 Aligned_cols=130 Identities=17% Similarity=0.104 Sum_probs=104.7
Q ss_pred cccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccc---------ccceeeeeecccCceeeeccccchhhhh
Q 007653 97 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS---------EGRTLLLACSLNSMSCYLKTKQYDECIK 167 (594)
Q Consensus 97 ~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~---------e~~~l~~~~~~N~a~~~~klg~y~eAi~ 167 (594)
.|.+...+++..+...+...++|++|+..+..+++..|..... ....+.-.+.+++......-.++ .+++
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve 103 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVE 103 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHH
Confidence 4678888999999999999999999999999999999976530 11122223334566666666677 6777
Q ss_pred hcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653 168 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (594)
Q Consensus 168 ~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l 227 (594)
++...+...+.+-.+++.+|.||-.+|++++|...|+++++++|+|+.+..+++......
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE 163 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence 776667668899999999999999999999999999999999999999888887765554
No 136
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.72 E-value=1.9e-05 Score=88.44 Aligned_cols=119 Identities=15% Similarity=0.122 Sum_probs=96.2
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~ 178 (594)
++..+..|..+|.+.....-|++|.++.+..- ..+...+|...+..++|.++..+++..++++|-
T Consensus 453 k~~d~~lyc~LGDv~~d~s~yEkawElsn~~s---------------arA~r~~~~~~~~~~~fs~~~~hle~sl~~npl 517 (777)
T KOG1128|consen 453 KDPDPRLYCLLGDVLHDPSLYEKAWELSNYIS---------------ARAQRSLALLILSNKDFSEADKHLERSLEINPL 517 (777)
T ss_pred CCCcchhHHHhhhhccChHHHHHHHHHhhhhh---------------HHHHHhhccccccchhHHHHHHHHHHHhhcCcc
Confidence 45556666666766666555555555544321 124455666677789999999999999999999
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007653 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 232 (594)
Q Consensus 179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~ 232 (594)
....||++|.|...++++..|+++|.+++.++|++.+.|.++..++-++++.++
T Consensus 518 q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~r 571 (777)
T KOG1128|consen 518 QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKR 571 (777)
T ss_pred chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHH
Confidence 999999999999999999999999999999999999999999999888876543
No 137
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=1.1e-05 Score=85.47 Aligned_cols=98 Identities=11% Similarity=-0.019 Sum_probs=84.1
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka 182 (594)
...+.|++.++.+.++|..|+.++.++|.++|.+ ..+++.+|.||+.+++|+.|+.+|.+|++++|.|-.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N---------~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~ 327 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNN---------VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAA 327 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc---------hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHH
Confidence 4578899999999999999999999999999998 4589999999999999999999999999999999888
Q ss_pred HHHhccchhhhhhHHHH-hhhccccccc
Q 007653 183 LYRRGQAYKDIGRLEEA-VSDLSNAHEV 209 (594)
Q Consensus 183 ~~~rg~al~~lg~~~eA-i~~lekAl~l 209 (594)
..-+..+..+..++.+. .+.|.+.+..
T Consensus 328 ~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 328 RAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 87777777777666554 5555555443
No 138
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=5.7e-06 Score=90.26 Aligned_cols=242 Identities=13% Similarity=-0.011 Sum_probs=170.4
Q ss_pred cChhHHHH-hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhhcC-ChHHHHHHHHhhhhcccccchHHHHHHHhccc
Q 007653 35 ANPELMRI-ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANA-SPEEIATMRARIDAQMNYEFNAAKMLKKQGNE 112 (594)
Q Consensus 35 ~~p~l~r~-A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~~~-~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~ 112 (594)
.|++++.. |-..+..-+-.+...+.+.+-...|-+.....-++..+ ...+-..+..--++-++..|..+-.|+..|..
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 35564433 44445555555555555555555544433332222211 00011122233344455678889999999999
Q ss_pred ccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhh
Q 007653 113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD 192 (594)
Q Consensus 113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~ 192 (594)
|+-.|++.+|..+|.|+..++|.+ ..+|+-.|..|--.++.+.|+..|..|-++-|..-...+.+|.=|.+
T Consensus 322 Yl~i~k~seARry~SKat~lD~~f---------gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTF---------GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR 392 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccc---------cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 999999999999999999999999 56999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchHHHHHHhhcccccCCcCCcchhhhhhhcCCCC
Q 007653 193 IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAVSSGSHRSSGTEYLAREKADPS 272 (594)
Q Consensus 193 lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~iee~~e~~~~~~~~~~s~s~~~~~~~~~~~~~ 272 (594)
.+.++-|.+.|..|+.+.|.++-+...++.+...-+.+.++..-....++.+.+ ....+. .+.
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~-~~~e~~-----~w~----------- 455 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKS-VLNEKI-----FWE----------- 455 (611)
T ss_pred hccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhh-cccccc-----chh-----------
Confidence 999999999999999999999999999999877777666654444444422111 110000 000
Q ss_pred CcccccCCCCCCCCCCCCCCCCCChHhHHHHHhhhhcc
Q 007653 273 KSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFISNA 310 (594)
Q Consensus 273 ~~~~~~~~~~~~~~p~~l~~l~~~Pe~~~~~~~~i~~~ 310 (594)
............++++.|++.-+++.+..-
T Consensus 456 --------p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 456 --------PTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred --------HHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 011223345567788999999999998843
No 139
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.64 E-value=2e-05 Score=83.72 Aligned_cols=129 Identities=15% Similarity=0.104 Sum_probs=87.7
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccc----------cccce---------------eeeeecccCc
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS----------SEGRT---------------LLLACSLNSM 153 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~----------~e~~~---------------l~~~~~~N~a 153 (594)
..+.++.+..++++|-...+...||+.|.++..+.|++|. .++.. ..+...-+++
T Consensus 554 l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ 633 (840)
T KOG2003|consen 554 LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLA 633 (840)
T ss_pred HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHH
Confidence 4445556666666666666666666666666666665542 00000 0022334577
Q ss_pred eeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653 154 SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (594)
Q Consensus 154 ~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l 227 (594)
..|+..+=++++|.++++|--+.|+..+-....+.|+.+.|+|..|++.|+.....-|.+.+..+.|-.+.-.+
T Consensus 634 ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dl 707 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDL 707 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccc
Confidence 77888888888888888888888888888888888888888888888888888888888877766665554333
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.64 E-value=4.7e-06 Score=77.50 Aligned_cols=127 Identities=17% Similarity=0.093 Sum_probs=98.4
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc---
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN--- 179 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~--- 179 (594)
+...+......+..+++..+...+.+.+.-.|..+- -..+++.+|.+++..|+|++|+..|+.++...|+.
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~y------a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~ 84 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPY------AALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELK 84 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHH
Confidence 344555555566788899998889999887777631 13467889999999999999999999999877654
Q ss_pred hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCC
Q 007653 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGP 236 (594)
Q Consensus 180 ~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~ 236 (594)
..+.++++.++...|+|++|+..++.. .-.+-.+.++..++.+..+.++..++...
T Consensus 85 ~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~ 140 (145)
T PF09976_consen 85 PLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAA 140 (145)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 568999999999999999999999763 33334567788888888887776554433
No 141
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.64 E-value=7.5e-06 Score=92.02 Aligned_cols=127 Identities=16% Similarity=-0.011 Sum_probs=110.6
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHH
Q 007653 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL 183 (594)
Q Consensus 104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~ 183 (594)
..|...+..+.+.+..++|..+..++-.++|..+ ..|+-+|.++...|.+.+|.+.|..|+.+||+++...
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~---------~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~ 721 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPLSA---------SVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSM 721 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhH---------HHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHH
Confidence 3444556666777778888889999999988874 4889999999999999999999999999999999999
Q ss_pred HHhccchhhhhhHHHHhh--hcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccc
Q 007653 184 YRRGQAYKDIGRLEEAVS--DLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGL 239 (594)
Q Consensus 184 ~~rg~al~~lg~~~eAi~--~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~ 239 (594)
.-+|.+|...|+-.-|.. .+..++++||.+.++|..++++.+++++.+.+...+..
T Consensus 722 ~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 722 TALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 999999999998888888 99999999999999999999999999887655444443
No 142
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.63 E-value=6.3e-06 Score=69.17 Aligned_cols=73 Identities=27% Similarity=0.359 Sum_probs=64.4
Q ss_pred cccchhhhhhcceeeeeccc--chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007653 159 TKQYDECIKVGSEVLAYDAK--NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 232 (594)
Q Consensus 159 lg~y~eAi~~~~~AL~ldP~--~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~ 232 (594)
.++|+.|+..++++++.+|. +..+++.+|.||+..|+|++|+..+++ +.++|.+..++..++.+...+++++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHH
Confidence 57899999999999999995 577888899999999999999999999 88999888888899999999887654
No 143
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.60 E-value=1.1e-05 Score=82.99 Aligned_cols=126 Identities=17% Similarity=0.097 Sum_probs=98.0
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchH
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 181 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k 181 (594)
...++..+-++|-..++|++||+.-++...+.+..-. -..+.+|.-++..+....+++.|+..+.+|+..||+++.
T Consensus 140 a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~----~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR 215 (389)
T COG2956 140 AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR----VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR 215 (389)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch----hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee
Confidence 4456777777888888888888887777766655421 112335666666667778888999999999999999999
Q ss_pred HHHHhccchhhhhhHHHHhhhcccccccCCCC-ChHHHHHhHHHHHhhhcc
Q 007653 182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-GTIADVLRDAKEILMKED 231 (594)
Q Consensus 182 a~~~rg~al~~lg~~~eAi~~lekAl~l~P~~-~~a~~~l~~a~~~l~~~~ 231 (594)
+-.-+|.++...|+|+.|++.|+.+++.+|++ +++...|.+|+..+++..
T Consensus 216 Asi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 216 ASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred hhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence 99999999999999999999999999999987 677788888887776644
No 144
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.58 E-value=1.5e-05 Score=55.61 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=31.8
Q ss_pred hcceeeeecccchHHHHHhccchhhhhhHHHHhh
Q 007653 168 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS 201 (594)
Q Consensus 168 ~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~ 201 (594)
+|++||+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999974
No 145
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.58 E-value=8.6e-06 Score=90.35 Aligned_cols=114 Identities=17% Similarity=0.137 Sum_probs=93.0
Q ss_pred ccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee
Q 007653 96 MNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY 175 (594)
Q Consensus 96 ~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l 175 (594)
....+.....+..++..|+.+|+|+.|+..|++|+++...... ..+.+...+..++|.+|+.+++|.+|+..|.+||.+
T Consensus 192 ~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G-~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i 270 (508)
T KOG1840|consen 192 GDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSG-LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI 270 (508)
T ss_pred ccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccC-ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3356777778888999999999999999999999998322111 011112334456999999999999999999999976
Q ss_pred --------cccchHHHHHhccchhhhhhHHHHhhhcccccccC
Q 007653 176 --------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 210 (594)
Q Consensus 176 --------dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~ 210 (594)
+|..+..+.+++.+|...|+|++|..+|++|++|-
T Consensus 271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY 313 (508)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 67788899999999999999999999999999874
No 146
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.56 E-value=0.00016 Score=74.73 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=99.5
Q ss_pred cccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeec
Q 007653 97 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD 176 (594)
Q Consensus 97 ~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ld 176 (594)
.+..+.+..+.+++..+....+++.|+..+.+|++-+|.+ +.+-.-+|.++...|+|..|++.++.+++.|
T Consensus 174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c---------vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn 244 (389)
T COG2956 174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKC---------VRASIILGRVELAKGDYQKAVEALERVLEQN 244 (389)
T ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc---------eehhhhhhHHHHhccchHHHHHHHHHHHHhC
Confidence 3678899999999999999999999999999999999998 4467789999999999999999999999999
Q ss_pred ccc-hHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653 177 AKN-VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215 (594)
Q Consensus 177 P~~-~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~ 215 (594)
|++ +...-.+-.||..+|+.++.+..+.++.+..+....
T Consensus 245 ~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 245 PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 987 457778899999999999999999999998876543
No 147
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.54 E-value=6.9e-06 Score=84.30 Aligned_cols=95 Identities=12% Similarity=0.046 Sum_probs=78.0
Q ss_pred ecccCceee-eccccchhhhhhcceeeeecccc---hHHHHHhccchhhhhhHHHHhhhcccccccCCCC---ChHHHHH
Q 007653 148 CSLNSMSCY-LKTKQYDECIKVGSEVLAYDAKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD---GTIADVL 220 (594)
Q Consensus 148 ~~~N~a~~~-~klg~y~eAi~~~~~AL~ldP~~---~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~---~~a~~~l 220 (594)
.+++.+.++ ++.++|++|+..|+..|+..|++ +.++|++|.+|+..|+|++|+.+|++++...|++ ++++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 456666665 56799999999999999999998 5899999999999999999999999999998886 4566667
Q ss_pred hHHHHHhhhccCCCCCccchHH
Q 007653 221 RDAKEILMKEDGHHGPRGLLIE 242 (594)
Q Consensus 221 ~~a~~~l~~~~~a~~~~~~~ie 242 (594)
+.+...+++...+...+..++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777776666555555553
No 148
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.53 E-value=1.7e-05 Score=88.84 Aligned_cols=126 Identities=10% Similarity=-0.058 Sum_probs=95.8
Q ss_pred HHHHHHhccccccc---ccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc--------cchhhhhhcce
Q 007653 103 AKMLKKQGNELYSE---GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK--------QYDECIKVGSE 171 (594)
Q Consensus 103 a~~l~~~Gn~~~~~---g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg--------~y~eAi~~~~~ 171 (594)
+-.++..|..++.. +.+..|+.+|++|++++|++.. +|.-++.||.... +...+.+...+
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~---------a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTY---------AQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 44566667666544 4488999999999999999943 5555566654432 34455666667
Q ss_pred eeee--cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCcc
Q 007653 172 VLAY--DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG 238 (594)
Q Consensus 172 AL~l--dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~ 238 (594)
++.+ +|..+.+|.-+|..+...|++++|...|++|+.++| +..++..++++....++.+++...+.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6664 788889999999999999999999999999999999 47789999999888877665544433
No 149
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=3e-05 Score=76.88 Aligned_cols=77 Identities=14% Similarity=0.075 Sum_probs=69.7
Q ss_pred CceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653 152 SMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (594)
Q Consensus 152 ~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~ 228 (594)
-|.+|+.-++|..||.+|.+||.++|..+.+|-+|+.||+.+.+|+.+..++++|++++|+....+..++.+.-...
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 46677888999999999999999999999999999999999999999999999999999998888888877655443
No 150
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.46 E-value=2.4e-05 Score=87.45 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=69.0
Q ss_pred ecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007653 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 223 (594)
Q Consensus 148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a 223 (594)
+++.+|.+|...|+|++|++++++||+..|..++.|+.+|.+|.+.|++.+|.++++.|-.+|+.|.-+.....+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy 271 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence 5688899999999999999999999999999999999999999999999999999999999999886655544443
No 151
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.46 E-value=3.1e-05 Score=53.38 Aligned_cols=34 Identities=38% Similarity=0.628 Sum_probs=29.9
Q ss_pred hHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007653 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213 (594)
Q Consensus 180 ~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~ 213 (594)
+++|+++|.+|..+|++++|+.+|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
No 152
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.45 E-value=5.9e-05 Score=78.62 Aligned_cols=120 Identities=13% Similarity=0.151 Sum_probs=62.5
Q ss_pred HHHhhhhcccccchHHHHHHHhcccccccc--cchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhh
Q 007653 88 MRARIDAQMNYEFNAAKMLKKQGNELYSEG--RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 165 (594)
Q Consensus 88 a~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g--~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eA 165 (594)
|.+.+....+...+..-.....+.+.+..| +|.+|.-.|++..+..+..+ ..++.++.|++.+|+|++|
T Consensus 150 A~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~---------~~lng~A~~~l~~~~~~eA 220 (290)
T PF04733_consen 150 AEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTP---------KLLNGLAVCHLQLGHYEEA 220 (290)
T ss_dssp HHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SH---------HHHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCH---------HHHHHHHHHHHHhCCHHHH
Confidence 334444444444444444444444443333 46666666666544433332 2345566666666666666
Q ss_pred hhhcceeeeecccchHHHHHhccchhhhhhH-HHHhhhcccccccCCCCChH
Q 007653 166 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRL-EEAVSDLSNAHEVSPDDGTI 216 (594)
Q Consensus 166 i~~~~~AL~ldP~~~ka~~~rg~al~~lg~~-~eAi~~lekAl~l~P~~~~a 216 (594)
...+.+++..+|+++.++.|+..+...+|+. +.+.+++.+....+|+++-+
T Consensus 221 e~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 221 EELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 6666666666666666666666666666665 44445555555566665443
No 153
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.45 E-value=5.1e-05 Score=82.75 Aligned_cols=122 Identities=13% Similarity=0.064 Sum_probs=98.7
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~ 163 (594)
++..+.+.+.+..+..+.....+.-.|..+..+|+++.|..+|.++.+..|... ..+...++.+++..|+|+
T Consensus 99 ~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~--------l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 99 DYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN--------ILVEIARTRILLAQNELH 170 (409)
T ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc--------hHHHHHHHHHHHHCCCHH
Confidence 344455555555555555566777888899999999999999999998777652 113344588888999999
Q ss_pred hhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007653 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213 (594)
Q Consensus 164 eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~ 213 (594)
.|+..+++.++..|+++.+++.++.+|...|+|++|++.+++.++....+
T Consensus 171 ~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~ 220 (409)
T TIGR00540 171 AARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD 220 (409)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999998775443
No 154
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.39 E-value=0.00012 Score=81.19 Aligned_cols=136 Identities=13% Similarity=0.056 Sum_probs=113.3
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~ 163 (594)
++.++..-+...++++++.-+.++..-.+.+....|++|..+|.++....+.. .+|+.-+.....++..+
T Consensus 599 dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe----------Rv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 599 DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE----------RVWMKSANLERYLDNVE 668 (913)
T ss_pred CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc----------hhhHHHhHHHHHhhhHH
Confidence 34455666666677777777777777777777778888888888877655543 36777777888899999
Q ss_pred hhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 164 eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
+|++.|+++|+.-|++.+.|..+|+++-..++.+.|.+.|...++..|+...+|-.|..+.++.++
T Consensus 669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~ 734 (913)
T KOG0495|consen 669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ 734 (913)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999988877653
No 155
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.37 E-value=3.6e-05 Score=81.26 Aligned_cols=107 Identities=17% Similarity=0.159 Sum_probs=84.2
Q ss_pred chHHHHHHHhcccccccccc--------------------hhHHHHHHHhhhccccccccccceeeeeecccCceeeecc
Q 007653 100 FNAAKMLKKQGNELYSEGRF--------------------SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT 159 (594)
Q Consensus 100 ~~~a~~l~~~Gn~~~~~g~y--------------------~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl 159 (594)
.-...+++++||+|...|+. +.|+++|.+-|++.....+ ......||-|+|..|+.+
T Consensus 132 v~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgD---r~aqGRa~GnLGNTyYlL 208 (639)
T KOG1130|consen 132 VLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGD---RLAQGRAYGNLGNTYYLL 208 (639)
T ss_pred HhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhh---HHhhcchhcccCceeeee
Confidence 34567899999999888764 5677778877776554432 222356999999999999
Q ss_pred ccchhhhhhcceeeeeccc------chHHHHHhccchhhhhhHHHHhhhccccccc
Q 007653 160 KQYDECIKVGSEVLAYDAK------NVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 209 (594)
Q Consensus 160 g~y~eAi~~~~~AL~ldP~------~~ka~~~rg~al~~lg~~~eAi~~lekAl~l 209 (594)
|+|+.||..-..-|.|.-. --.+|.++|.||.-+|+++.|+++|++.+.+
T Consensus 209 Gdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 209 GDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 9999999987777766543 3468999999999999999999999987654
No 156
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.31 E-value=7.5e-05 Score=55.00 Aligned_cols=43 Identities=28% Similarity=0.346 Sum_probs=36.8
Q ss_pred hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007653 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 222 (594)
Q Consensus 180 ~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~ 222 (594)
+.+++.+|.+|..+|++++|++.|+++++.+|+|+.++..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3578888999999999999999999999999999888887764
No 157
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.29 E-value=4.6e-05 Score=78.95 Aligned_cols=114 Identities=19% Similarity=0.192 Sum_probs=88.1
Q ss_pred cchHHHHHHHhccccccc-ccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecc
Q 007653 99 EFNAAKMLKKQGNELYSE-GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA 177 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~-g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP 177 (594)
....+..+.+.|..|... +++++|+.+|.+|+++...... ......|+.+++.++.++++|++|++.|++++...-
T Consensus 110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~---~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS---PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 344678899999999999 9999999999999998654431 111244788999999999999999999999875321
Q ss_pred ------cch-HHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653 178 ------KNV-KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215 (594)
Q Consensus 178 ------~~~-ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~ 215 (594)
-++ ..++..+.|++..|++..|...|++...++|....
T Consensus 187 ~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 187 ENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp CHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred cccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 123 35678889999999999999999999999997654
No 158
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.29 E-value=9.4e-05 Score=80.45 Aligned_cols=103 Identities=13% Similarity=0.058 Sum_probs=84.5
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHH
Q 007653 105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY 184 (594)
Q Consensus 105 ~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~ 184 (594)
.+...+....+.|+++.|..+|.++.+..|+... ......+.++...|+|++|+..+++.++.+|+++.++.
T Consensus 120 ~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~--------~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ 191 (398)
T PRK10747 120 NYLLAAEAAQQRGDEARANQHLERAAELADNDQL--------PVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLR 191 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchH--------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 3444455669999999999999999998777631 12224478899999999999999999999999999999
Q ss_pred HhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653 185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215 (594)
Q Consensus 185 ~rg~al~~lg~~~eAi~~lekAl~l~P~~~~ 215 (594)
.++.+|...|+|++|++.+.+..+..+.++.
T Consensus 192 ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~ 222 (398)
T PRK10747 192 LAEQAYIRTGAWSSLLDILPSMAKAHVGDEE 222 (398)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH
Confidence 9999999999999999888877776665443
No 159
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.28 E-value=0.00019 Score=82.76 Aligned_cols=113 Identities=13% Similarity=0.080 Sum_probs=99.5
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchH
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 181 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k 181 (594)
....|..+|..+...+++..|+..|+-+++.+|.+. .+|..+|.+|.+.|+|..|++.+++|..++|.+.-
T Consensus 561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~---------n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDY---------NLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred HHhhhhhccccccCccchhhHHHHHHHHhcCCchhH---------HHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 446677799999999999999999999999999994 49999999999999999999999999999999999
Q ss_pred HHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007653 182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 223 (594)
Q Consensus 182 a~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a 223 (594)
+.|..+.....+|+|.+|+..+...+........++..++++
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~ 673 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAES 673 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 999999999999999999999998877655544444444443
No 160
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=6.5e-05 Score=77.10 Aligned_cols=108 Identities=11% Similarity=-0.032 Sum_probs=95.8
Q ss_pred ccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhh--
Q 007653 117 GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-- 194 (594)
Q Consensus 117 g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg-- 194 (594)
...+.-+...+..|..+|++.+ -|.-+|.+|+.++++..|...|.+|++|.|+|+..+.-+|.+++...
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~e---------gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~ 206 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAE---------GWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQ 206 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCch---------hHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Confidence 3456778889999999999955 79999999999999999999999999999999999999999997653
Q ss_pred -hHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653 195 -RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 233 (594)
Q Consensus 195 -~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a 233 (594)
.-.++...|++++++||.|..+...|+...+..++++.+
T Consensus 207 ~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A 246 (287)
T COG4235 207 QMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEA 246 (287)
T ss_pred cccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHH
Confidence 367899999999999999999999999998888777643
No 161
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00015 Score=76.82 Aligned_cols=162 Identities=9% Similarity=-0.031 Sum_probs=113.9
Q ss_pred ccCCCchhhhhhhhhcCCChhHHHHHHHHhhcC----ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHH
Q 007653 48 KNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANA----SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNAL 123 (594)
Q Consensus 48 k~~~pe~~~~a~e~l~~~~pee~~~~~~~~~~~----~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi 123 (594)
-+.+-.+....+++....+|..+..|....--+ .-++++.+...+ +......+.-|..-|..++..++|..|+
T Consensus 244 ~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~L---f~~~~~ta~~wfV~~~~l~~~K~~~rAL 320 (564)
T KOG1174|consen 244 YNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYL---FAKVKYTASHWFVHAQLLYDEKKFERAL 320 (564)
T ss_pred hhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHH---HhhhhcchhhhhhhhhhhhhhhhHHHHH
Confidence 355556666667777777777776665441111 222222222222 2222234556777778888888888888
Q ss_pred HHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhc
Q 007653 124 QKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDL 203 (594)
Q Consensus 124 ~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~l 203 (594)
.+-.++|+.+|+. +.+|+-.|.+++.+++..+|+-.|+.|+.+.|.....|--+-.+|...|++.||.-..
T Consensus 321 ~~~eK~I~~~~r~---------~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~A 391 (564)
T KOG1174|consen 321 NFVEKCIDSEPRN---------HEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALA 391 (564)
T ss_pred HHHHHHhccCccc---------chHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHH
Confidence 8888888888877 4477888888888888888888888888888888888888888888888888888888
Q ss_pred ccccccCCCCChHHHHHh
Q 007653 204 SNAHEVSPDDGTIADVLR 221 (594)
Q Consensus 204 ekAl~l~P~~~~a~~~l~ 221 (594)
..++..-|.+......++
T Consensus 392 n~~~~~~~~sA~~LtL~g 409 (564)
T KOG1174|consen 392 NWTIRLFQNSARSLTLFG 409 (564)
T ss_pred HHHHHHhhcchhhhhhhc
Confidence 888888787777777775
No 162
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.24 E-value=0.00011 Score=79.36 Aligned_cols=105 Identities=12% Similarity=0.125 Sum_probs=79.0
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHH
Q 007653 105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY 184 (594)
Q Consensus 105 ~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~ 184 (594)
....++..++..++..+|+..+.++|...|.+.. ++.-.+.++++.++|+.|+..+++++.+.|+..+.|+
T Consensus 202 v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~---------LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~ 272 (395)
T PF09295_consen 202 VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSE---------LLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWY 272 (395)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHH
Confidence 3344566666667778888888888887777632 5566777788888888888888888888888888888
Q ss_pred HhccchhhhhhHHHHhhhcccccccCCCCChHHH
Q 007653 185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD 218 (594)
Q Consensus 185 ~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~ 218 (594)
.++.+|..+|+|++|+..+..+--..+.+.....
T Consensus 273 ~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k~~~~ 306 (395)
T PF09295_consen 273 QLAECYIQLGDFENALLALNSCPMLTYKDKYKLK 306 (395)
T ss_pred HHHHHHHhcCCHHHHHHHHhcCcCCCCccchhhh
Confidence 8888888888888888888866555444443333
No 163
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.24 E-value=0.0001 Score=50.43 Aligned_cols=34 Identities=38% Similarity=0.650 Sum_probs=30.6
Q ss_pred hHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007653 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213 (594)
Q Consensus 180 ~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~ 213 (594)
+++++.+|.+|..+|+|++|+.+|++++.++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4789999999999999999999999999999986
No 164
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.19 E-value=4.8e-05 Score=68.81 Aligned_cols=85 Identities=21% Similarity=0.180 Sum_probs=72.8
Q ss_pred ecccCceeeeccccchhhhhhcceeeeeccc---chHHHHHhccchhhhhhHHHHhhhcccccccCCC---CChHHHHHh
Q 007653 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAK---NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD---DGTIADVLR 221 (594)
Q Consensus 148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~---~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~---~~~a~~~l~ 221 (594)
+++++|.+|-.+|+.++|+..|+++|...+. -..++..+|.+|..+|++++|+..+++++.-.|+ +..+...+.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 5688999999999999999999999987543 4679999999999999999999999999999898 667777777
Q ss_pred HHHHHhhhccC
Q 007653 222 DAKEILMKEDG 232 (594)
Q Consensus 222 ~a~~~l~~~~~ 232 (594)
.+...+++.++
T Consensus 83 l~L~~~gr~~e 93 (120)
T PF12688_consen 83 LALYNLGRPKE 93 (120)
T ss_pred HHHHHCCCHHH
Confidence 77777665544
No 165
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.18 E-value=4.1e-05 Score=80.89 Aligned_cols=106 Identities=15% Similarity=0.191 Sum_probs=86.9
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeec------
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD------ 176 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ld------ 176 (594)
-.++-++||.||-.|+|+.||.+-+.-|++...+.+. ...-.+|.|+|.||.-+|+|+.|+++|.+++.+.
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDr---AaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r 271 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDR---AAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR 271 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhH---HHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch
Confidence 3567889999999999999999988888877665431 1113489999999999999999999999876542
Q ss_pred ccchHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007653 177 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 211 (594)
Q Consensus 177 P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P 211 (594)
-..+...|.+|.+|.-+.+|+.||.|+.+-|.|.-
T Consensus 272 ~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 272 TVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22466789999999999999999999999887754
No 166
>PRK11906 transcriptional regulator; Provisional
Probab=97.17 E-value=7.5e-05 Score=80.96 Aligned_cols=115 Identities=11% Similarity=-0.059 Sum_probs=94.0
Q ss_pred HHHhcccccccc---cchhHHHHHHHhh---hccccccccccceeeeeecccCceeeecc---------ccchhhhhhcc
Q 007653 106 LKKQGNELYSEG---RFSNALQKYLLAK---KNLQGIHSSEGRTLLLACSLNSMSCYLKT---------KQYDECIKVGS 170 (594)
Q Consensus 106 l~~~Gn~~~~~g---~y~eAi~~Y~kAL---~l~p~~~~~e~~~l~~~~~~N~a~~~~kl---------g~y~eAi~~~~ 170 (594)
++..|...+.++ ....|+.+|.+++ .++|.+. .+|.-++.||... .+-.+|++..+
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a---------~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~ 328 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKT---------ECYCLLAECHMSLALHGKSELELAAQKALELLD 328 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccH---------HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 355555543333 4467899999999 8888884 4788888888654 24567888999
Q ss_pred eeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 171 EVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 171 ~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
+|+++||.++.+++.+|.++...++++.|+..|++|+.++|+...++...+.+..--++
T Consensus 329 rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~ 387 (458)
T PRK11906 329 YVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK 387 (458)
T ss_pred HHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999888886555444
No 167
>PRK15331 chaperone protein SicA; Provisional
Probab=97.09 E-value=7.3e-05 Score=70.76 Aligned_cols=92 Identities=11% Similarity=-0.019 Sum_probs=82.8
Q ss_pred ccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 150 LNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 150 ~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
+..|.-++..|+|++|...|+-...+||.++++++.+|.|+..+++|++|+..|..|..++++++......+.|.-.+++
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 44555678899999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCCCCCccchH
Q 007653 230 EDGHHGPRGLLI 241 (594)
Q Consensus 230 ~~~a~~~~~~~i 241 (594)
...+......++
T Consensus 121 ~~~A~~~f~~a~ 132 (165)
T PRK15331 121 AAKARQCFELVN 132 (165)
T ss_pred HHHHHHHHHHHH
Confidence 777766665555
No 168
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.00057 Score=75.37 Aligned_cols=153 Identities=14% Similarity=0.139 Sum_probs=95.8
Q ss_pred hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhhcC-ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchh
Q 007653 43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANA-SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN 121 (594)
Q Consensus 43 A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~~~-~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~e 121 (594)
.-...++...+++.+.+.++...-|.+..+.+.++-++ ..+.++.+.+-...... ........+.++.++|+.++.++
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~-~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA-LLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch-hhhcchhhHHHHHHHHHcccHHH
Confidence 33344455556666666666666677777777774444 33444444421111110 01111122577778888888888
Q ss_pred HHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee--------------------------
Q 007653 122 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-------------------------- 175 (594)
Q Consensus 122 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l-------------------------- 175 (594)
|+..|+ .++-.+.. +..-+|.++|++++|++|+..|+..++-
T Consensus 98 alk~~~-~~~~~~~~-----------ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q 165 (652)
T KOG2376|consen 98 ALKTLK-GLDRLDDK-----------LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQ 165 (652)
T ss_pred HHHHHh-cccccchH-----------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHH
Confidence 888887 22222211 3345678888888888888888776422
Q ss_pred ----ccc-chHHHHHhccchhhhhhHHHHhhhcccccc
Q 007653 176 ----DAK-NVKALYRRGQAYKDIGRLEEAVSDLSNAHE 208 (594)
Q Consensus 176 ----dP~-~~ka~~~rg~al~~lg~~~eAi~~lekAl~ 208 (594)
.|. ....+||++.++...|+|.+|++.+++|+.
T Consensus 166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 222 567899999999999999999999999933
No 169
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.00028 Score=73.13 Aligned_cols=80 Identities=20% Similarity=0.160 Sum_probs=69.7
Q ss_pred ccCceeeeccccchhhhhhcceeeeeccc----chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007653 150 LNSMSCYLKTKQYDECIKVGSEVLAYDAK----NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 225 (594)
Q Consensus 150 ~N~a~~~~klg~y~eAi~~~~~AL~ldP~----~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~ 225 (594)
---|.-|++.++|..|+..|+++|+..-. ++..|.||+.|.+.+|+|..|+.|+.+|+.++|.+.+++.+-.+|..
T Consensus 85 KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~ 164 (390)
T KOG0551|consen 85 KEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLL 164 (390)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHH
Confidence 33466689999999999999999987533 67789999999999999999999999999999999988887777777
Q ss_pred Hhhh
Q 007653 226 ILMK 229 (594)
Q Consensus 226 ~l~~ 229 (594)
.|..
T Consensus 165 eLe~ 168 (390)
T KOG0551|consen 165 ELER 168 (390)
T ss_pred HHHH
Confidence 7766
No 170
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.93 E-value=0.00056 Score=71.31 Aligned_cols=132 Identities=16% Similarity=0.072 Sum_probs=96.9
Q ss_pred hHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec--c
Q 007653 82 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK--T 159 (594)
Q Consensus 82 ~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k--l 159 (594)
..+++.+..-++.. ...+...-.-.++++.+|++.|.+.|+...+.+++. ...+++.++.. .
T Consensus 115 ~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~-----------~l~qLa~awv~l~~ 178 (290)
T PF04733_consen 115 EGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDS-----------ILTQLAEAWVNLAT 178 (290)
T ss_dssp CCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCH-----------HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcH-----------HHHHHHHHHHHHHh
Confidence 33444455444432 334555556667889999999999999988876554 33455544433 3
Q ss_pred --ccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 160 --KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 160 --g~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
.+|.+|...|++.....+.++..+...+.|+..+|+|++|...+++|+..+|+++.+..++..+...+++
T Consensus 179 g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 179 GGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp TTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence 3799999999998887788999999999999999999999999999999999999988888877666654
No 171
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.0007 Score=74.69 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=93.9
Q ss_pred ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc
Q 007653 81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160 (594)
Q Consensus 81 ~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg 160 (594)
..++++.+.....+.+...++...+++..-.++.+.++|++|+..-++-..+.-. ....+-.+.|+|+++
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~----------~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI----------NSFFFEKAYCEYRLN 93 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc----------chhhHHHHHHHHHcc
Confidence 3445666666666677777788888999999999999999998443332211111 112257899999999
Q ss_pred cchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215 (594)
Q Consensus 161 ~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~ 215 (594)
+.++|+.+++ .+++...+.+..+|..++++|+|++|++.|+..++.+-++.+
T Consensus 94 k~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d 145 (652)
T KOG2376|consen 94 KLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD 145 (652)
T ss_pred cHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence 9999999999 557888889999999999999999999999999877665533
No 172
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.88 E-value=0.00023 Score=76.98 Aligned_cols=108 Identities=16% Similarity=0.107 Sum_probs=98.2
Q ss_pred cccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhh
Q 007653 114 YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI 193 (594)
Q Consensus 114 ~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~l 193 (594)
...++|+.|+..|++..+.+|.. .+-++.+|+..++..+|++.+.++|+.+|.+...+...+..|...
T Consensus 180 ~~t~~~~~ai~lle~L~~~~pev------------~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRERDPEV------------AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred hhcccHHHHHHHHHHHHhcCCcH------------HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 44678999999999998877654 345788888899999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653 194 GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 233 (594)
Q Consensus 194 g~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a 233 (594)
++|+.|+..+++++.+.|.+.+.|..|.++.-.+++++.+
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~A 287 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENA 287 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999999999999999999999999887754
No 173
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.88 E-value=7e-05 Score=66.71 Aligned_cols=101 Identities=22% Similarity=0.341 Sum_probs=78.9
Q ss_pred HhcccccccccchhHHHHHHHhhhccccccccc---cceeeeeecccCceeeeccccchhhhhhcceeeee-------cc
Q 007653 108 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE---GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-------DA 177 (594)
Q Consensus 108 ~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e---~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l-------dP 177 (594)
..|...+..|-|.+|...|.+|.+.....|..+ +......||..++.++..+|+|++++...+++|.+ +.
T Consensus 14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q 93 (144)
T PF12968_consen 14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ 93 (144)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence 345556778899999999999999887776533 34445678999999999999999999999998854 32
Q ss_pred ----cchHHHHHhccchhhhhhHHHHhhhcccccc
Q 007653 178 ----KNVKALYRRGQAYKDIGRLEEAVSDLSNAHE 208 (594)
Q Consensus 178 ----~~~ka~~~rg~al~~lg~~~eAi~~lekAl~ 208 (594)
-++.+.|+|+.++-.+|+.++|+..|+.+.+
T Consensus 94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 3677899999999999999999999887654
No 174
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.87 E-value=0.00065 Score=69.05 Aligned_cols=122 Identities=9% Similarity=-0.044 Sum_probs=91.2
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc------------------cc
Q 007653 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK------------------QY 162 (594)
Q Consensus 101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg------------------~y 162 (594)
-...+.+.+|..+++.++|.+|+..|++.++..|+++.. ..+++.+|.|+..++ .-
T Consensus 67 ~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~------~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~ 140 (243)
T PRK10866 67 YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI------DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHA 140 (243)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch------HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHH
Confidence 344567899999999999999999999999999998752 446777887764443 13
Q ss_pred hhhhhhcceeeeecccchH---H--------------HHHhccchhhhhhHHHHhhhcccccccCCCCChHH---HHHhH
Q 007653 163 DECIKVGSEVLAYDAKNVK---A--------------LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA---DVLRD 222 (594)
Q Consensus 163 ~eAi~~~~~AL~ldP~~~k---a--------------~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~---~~l~~ 222 (594)
.+|+..+++.|+.-|+..- + -+..|.-|.+.|+|..|+.-++.++.--|+-+... ..+.+
T Consensus 141 ~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ 220 (243)
T PRK10866 141 RAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMEN 220 (243)
T ss_pred HHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 5788999999999887522 2 23356668888999999999999999888765444 44444
Q ss_pred HHHHhh
Q 007653 223 AKEILM 228 (594)
Q Consensus 223 a~~~l~ 228 (594)
+...++
T Consensus 221 ay~~lg 226 (243)
T PRK10866 221 AYRQLQ 226 (243)
T ss_pred HHHHcC
Confidence 444443
No 175
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.83 E-value=0.00074 Score=52.05 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=43.2
Q ss_pred HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 181 ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
+.+|.++.+++++|+|++|..+++.+|+++|+|..+......++.++.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999888887754
No 176
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.83 E-value=0.00019 Score=68.67 Aligned_cols=88 Identities=16% Similarity=0.109 Sum_probs=64.8
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhccccccc----------ccchhHHHHHHHhhhccccccccccceeeeeecccCce
Q 007653 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSE----------GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS 154 (594)
Q Consensus 85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~----------g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~ 154 (594)
++.+.+.+.+....++..++.+.+-|..+... .-+++|+..|++||.++|..++ +++++|.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hd---------Alw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHD---------ALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HH---------HHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHH---------HHHHHHH
Confidence 44555666666667888888888888877544 3457899999999999999965 8899999
Q ss_pred eeecccc-----------chhhhhhcceeeeecccchH
Q 007653 155 CYLKTKQ-----------YDECIKVGSEVLAYDAKNVK 181 (594)
Q Consensus 155 ~~~klg~-----------y~eAi~~~~~AL~ldP~~~k 181 (594)
+|..++. |++|..+|++|..++|+|..
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 9987753 88888999999999998864
No 177
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.80 E-value=0.00088 Score=72.41 Aligned_cols=128 Identities=16% Similarity=0.090 Sum_probs=100.3
Q ss_pred ccchHHHHHHHhcccccccccchhHHHHHHHh-hhccccccccccceeeeeecccCceeeeccccchhhhhhcceeee--
Q 007653 98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLA-KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA-- 174 (594)
Q Consensus 98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kA-L~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~-- 174 (594)
...+.+.++.-+.+.+|..|+|..|.+.+... |.-.+... ....-....+|+|+|-+|++++.|.-++.+|.+||.
T Consensus 235 ~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~-~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~ 313 (696)
T KOG2471|consen 235 IAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGT-ITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNS 313 (696)
T ss_pred hcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCcc-ccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHH
Confidence 34466788889999999999999999987653 12112110 001112356789999999999999999999999985
Q ss_pred -------ec---------ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007653 175 -------YD---------AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (594)
Q Consensus 175 -------ld---------P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~ 226 (594)
+. -.....+|+.|..|...|+.-.|.++|.++..+--.++.+|-++.+|.-.
T Consensus 314 c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 314 CSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 11 23567899999999999999999999999999998999999999988544
No 178
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.76 E-value=0.00013 Score=53.67 Aligned_cols=42 Identities=24% Similarity=0.184 Sum_probs=39.0
Q ss_pred ecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccc
Q 007653 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA 189 (594)
Q Consensus 148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~a 189 (594)
+|+.+|.+|..+|++++|++.|+++|+++|+++.+++.+|.+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 567899999999999999999999999999999999998864
No 179
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.64 E-value=0.00021 Score=72.63 Aligned_cols=95 Identities=16% Similarity=0.092 Sum_probs=79.8
Q ss_pred cccCceeeeccccchhhhhhcceeeeecccc---hHHHHHhccchhhhhhHHHHhhhcccccccCCCCC---hHHHHHhH
Q 007653 149 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG---TIADVLRD 222 (594)
Q Consensus 149 ~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~---~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~---~a~~~l~~ 222 (594)
.||.|.-|++.|+|.+|...|..-|+.-|+. +.++|++|.+++..|+|++|...|..+++-.|+++ +....|+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5888888999999999999999999988875 77999999999999999999999999999988875 56677788
Q ss_pred HHHHhhhccCCCCCccchHHH
Q 007653 223 AKEILMKEDGHHGPRGLLIEE 243 (594)
Q Consensus 223 a~~~l~~~~~a~~~~~~~iee 243 (594)
+...+++...++.-...++.+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 888887776665555555533
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.63 E-value=0.00043 Score=66.55 Aligned_cols=116 Identities=13% Similarity=0.113 Sum_probs=95.0
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhh-ccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc--c
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKK-NLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--N 179 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~-l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~--~ 179 (594)
....+.+|+.+...|+|.+|..+|.+++. +.-.+ ....+.++.+.+..+++..|...+++..+.+|. .
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d---------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~ 159 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHD---------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS 159 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC---------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC
Confidence 55788899999999999999999999986 33333 236788999999999999999999999999985 5
Q ss_pred hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (594)
Q Consensus 180 ~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~ 228 (594)
++.+...|.+|..+|++++|...|+.++...|+- .+...+.+-.-+.+
T Consensus 160 pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qg 207 (251)
T COG4700 160 PDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQG 207 (251)
T ss_pred CCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhc
Confidence 7888889999999999999999999999988763 34444444444444
No 181
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.59 E-value=0.00072 Score=68.23 Aligned_cols=124 Identities=14% Similarity=0.162 Sum_probs=100.8
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchH
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 181 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k 181 (594)
-+..|++.|...++.|+|.+|+.+|++.....|..+. .-.+.+.++.+|++.++|++|+...++-|.+.|.++.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~------~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPY------SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence 4678999999999999999999999999988777653 1346678899999999999999999999999998755
Q ss_pred ---HHHHhccchhh--------hhhHHHHhhhcccccccCCCC---ChHHHHHhHHHHHhhhcc
Q 007653 182 ---ALYRRGQAYKD--------IGRLEEAVSDLSNAHEVSPDD---GTIADVLRDAKEILMKED 231 (594)
Q Consensus 182 ---a~~~rg~al~~--------lg~~~eAi~~lekAl~l~P~~---~~a~~~l~~a~~~l~~~~ 231 (594)
++|.+|.+++. ...-.+|+..|+..+..-|+. +.+...+..+..++..++
T Consensus 107 ~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E 170 (254)
T COG4105 107 ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE 170 (254)
T ss_pred hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 67778887653 344567999999999999986 466677777766665544
No 182
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.57 E-value=0.001 Score=74.07 Aligned_cols=111 Identities=14% Similarity=-0.023 Sum_probs=73.8
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka 182 (594)
...|..-.++....++.++|+.+++++|+..|.++. +|.-+|++|-+.++.+.|.+.|...++..|..+-.
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~K---------l~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipL 721 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHK---------LWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPL 721 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHH---------HHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchH
Confidence 344555555555666667777777777777776643 66677777777777777777777777777777777
Q ss_pred HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007653 183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 222 (594)
Q Consensus 183 ~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~ 222 (594)
|..++..--..|+...|...|+++.-.+|++..+|-..-.
T Consensus 722 WllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir 761 (913)
T KOG0495|consen 722 WLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIR 761 (913)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHH
Confidence 7777766666667777777777777777776655544333
No 183
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.56 E-value=0.0012 Score=65.05 Aligned_cols=125 Identities=16% Similarity=0.070 Sum_probs=92.8
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecc-----------ccchhhhh
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-----------KQYDECIK 167 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl-----------g~y~eAi~ 167 (594)
.+-..+++..+|..+++.|+|.+|+..|++.++..|..+.. ..+++.+|.|++.+ +...+|+.
T Consensus 38 s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~------~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~ 111 (203)
T PF13525_consen 38 SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA------DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIE 111 (203)
T ss_dssp STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH------HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch------hhHHHHHHHHHHHhCccchhcccChHHHHHHHH
Confidence 44556788999999999999999999999999999988641 34677788886554 44568999
Q ss_pred hcceeeeecccchHH-----------------HHHhccchhhhhhHHHHhhhcccccccCCCCCh---HHHHHhHHHHHh
Q 007653 168 VGSEVLAYDAKNVKA-----------------LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT---IADVLRDAKEIL 227 (594)
Q Consensus 168 ~~~~AL~ldP~~~ka-----------------~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~---a~~~l~~a~~~l 227 (594)
.|+..|+.-|++.-+ -+..|.-|.+.|.|..|+..|+.+++.-|+-.. +...+.++..++
T Consensus 112 ~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l 191 (203)
T PF13525_consen 112 EFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKL 191 (203)
T ss_dssp HHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 999999998876322 344688899999999999999999999998754 455555555555
Q ss_pred hh
Q 007653 228 MK 229 (594)
Q Consensus 228 ~~ 229 (594)
+.
T Consensus 192 ~~ 193 (203)
T PF13525_consen 192 GL 193 (203)
T ss_dssp T-
T ss_pred CC
Confidence 43
No 184
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.55 E-value=0.0024 Score=67.65 Aligned_cols=183 Identities=17% Similarity=0.107 Sum_probs=119.8
Q ss_pred ChhHHHHhhhhh-ccCCCchhhhhhhhhc---CCChhHHHHHHHHhhcC------ChHHHHHHHHhhhhcccccchHHHH
Q 007653 36 NPELMRIATENM-KNMRPEDLKCAAEQLT---HTPPEEVAEIGEKLANA------SPEEIATMRARIDAQMNYEFNAAKM 105 (594)
Q Consensus 36 ~p~l~r~A~e~m-k~~~pe~~~~a~e~l~---~~~pee~~~~~~~~~~~------~~~el~aa~~~~~a~~~~~~~~a~~ 105 (594)
+|+.+|.+.+.. +.....++......+. ..+.+++....++++.. +....+.+.....++-......++.
T Consensus 186 ~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l 265 (400)
T COG3071 186 HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPEL 265 (400)
T ss_pred ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhH
Confidence 445555554442 3334444444444443 34556666555544432 1122222223333332333333555
Q ss_pred HHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHH
Q 007653 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR 185 (594)
Q Consensus 106 l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~ 185 (594)
....+..+...|++++|.+...++++..-+.. +-+=.-.++.+++..-++..++.++.+|+++..++.
T Consensus 266 ~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~------------L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~t 333 (400)
T COG3071 266 VVAYAERLIRLGDHDEAQEIIEDALKRQWDPR------------LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLST 333 (400)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccChh------------HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHH
Confidence 55666678899999999999999987543321 111112356789999999999999999999999999
Q ss_pred hccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653 186 RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 231 (594)
Q Consensus 186 rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~ 231 (594)
+|..|++.+.|.+|..+|+.|++..|+.. .+..++.+..++++-.
T Consensus 334 LG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~~~ 378 (400)
T COG3071 334 LGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADALDQLGEPE 378 (400)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCChH
Confidence 99999999999999999999999988643 4577777777776543
No 185
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.55 E-value=0.0012 Score=45.24 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=30.3
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccc
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGI 136 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~ 136 (594)
++.|..+|..++..|+|++|+.+|+++|+++|.+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4679999999999999999999999999999863
No 186
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.0028 Score=65.00 Aligned_cols=65 Identities=26% Similarity=0.270 Sum_probs=56.2
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeee
Q 007653 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA 174 (594)
Q Consensus 101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ 174 (594)
+.+..+.+.|..+|+.|+|++|++.|..|++..-..+. +-+|++.||++.++|..|++...+.|+
T Consensus 142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl---------lAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL---------LAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred CccchhccchheeeccccHHHHHHHHHHHHhhcCCCch---------hHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45678899999999999999999999999997665543 668999999999999999998776653
No 187
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.0015 Score=65.93 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=92.7
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~ 178 (594)
.+..+.....+|....+-|+.+.|..+|+++-+...... .-.....+..|.+.+|+-.++|.+|...|++.+..||.
T Consensus 208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~---~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~ 284 (366)
T KOG2796|consen 208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD---GLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR 284 (366)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh---ccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC
Confidence 366677788889999999999999888885432111110 01112446788999999999999999999999999999
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007653 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214 (594)
Q Consensus 179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~ 214 (594)
++.+..+.+.|+..+|+..+|++.++.++.++|...
T Consensus 285 ~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 285 NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 999999999999999999999999999999999753
No 188
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.46 E-value=0.0017 Score=44.24 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=30.3
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccc
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGI 136 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~ 136 (594)
++.+..+|..++..|+|++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999998864
No 189
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.41 E-value=0.0016 Score=74.26 Aligned_cols=125 Identities=26% Similarity=0.427 Sum_probs=107.6
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec--cccchhhhhhcceeeeec
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK--TKQYDECIKVGSEVLAYD 176 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k--lg~y~eAi~~~~~AL~ld 176 (594)
....+..++..||.+|..++|.+|...|..++.+.|.+.. ....++.|.+.||.. +++|..++..|+-++...
T Consensus 49 ~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~-----~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~ 123 (748)
T KOG4151|consen 49 FLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHH-----VVATLRSNQASCYMQLGLGEYPKAIPECELALESQ 123 (748)
T ss_pred HHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccch-----hhhhHHHHHHHHHhhcCccchhhhcCchhhhhhcc
Confidence 3445667899999999999999999999999999996532 235677888888876 469999999999999999
Q ss_pred ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653 177 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (594)
Q Consensus 177 P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~ 228 (594)
|...+++..|+.+|..+++++-|++++.-....+|.+..+-..+.+.+..+.
T Consensus 124 p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll~ 175 (748)
T KOG4151|consen 124 PRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLLE 175 (748)
T ss_pred chHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999877776666666653
No 190
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.38 E-value=0.001 Score=72.04 Aligned_cols=110 Identities=11% Similarity=0.093 Sum_probs=95.7
Q ss_pred hHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecccc
Q 007653 82 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ 161 (594)
Q Consensus 82 ~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~ 161 (594)
..+++.|..-|.+.++..++.+..+-+++..+++.++|..|+.-..+||+++|.. +.+|+.+|.++.++++
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~---------~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY---------IKAYVRRGTAVMALGE 87 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh---------hheeeeccHHHHhHHH
Confidence 3457778888899999999999999999999999999999999999999999988 5699999999999999
Q ss_pred chhhhhhcceeeeecccchHHHHHhccchhhhh--hHHHHh
Q 007653 162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG--RLEEAV 200 (594)
Q Consensus 162 y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg--~~~eAi 200 (594)
|.+|+.+|+....+.|+.+++.--...|-.... +|+.|+
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai 128 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAI 128 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999998777777665443 344444
No 191
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.31 E-value=0.00042 Score=71.85 Aligned_cols=111 Identities=18% Similarity=0.239 Sum_probs=80.3
Q ss_pred ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecc-ccchhhhhhcceeeeec
Q 007653 98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-KQYDECIKVGSEVLAYD 176 (594)
Q Consensus 98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl-g~y~eAi~~~~~AL~ld 176 (594)
.....+..+.+.++.+ +..++.+|+.+|++|+++.-.... ...-..++.++|.+|... +++++|++.|.+|+++-
T Consensus 70 ~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~---~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y 145 (282)
T PF14938_consen 70 DKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGR---FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELY 145 (282)
T ss_dssp -HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT----HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3444566666666555 445999999999999987543321 011144788999999998 99999999999999873
Q ss_pred c------cchHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007653 177 A------KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212 (594)
Q Consensus 177 P------~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~ 212 (594)
- .....+...|.++..+|+|++|+..|++.....-+
T Consensus 146 ~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 146 EQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 2 23556778999999999999999999998775433
No 192
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.27 E-value=0.00039 Score=64.30 Aligned_cols=98 Identities=19% Similarity=0.151 Sum_probs=63.6
Q ss_pred hcccccccccchhHHHHHHHhhhcccccccc-------------ccceeeeeecccCceeeeccccchhhhhhcceeeee
Q 007653 109 QGNELYSEGRFSNALQKYLLAKKNLQGIHSS-------------EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY 175 (594)
Q Consensus 109 ~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~-------------e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l 175 (594)
.|......++...++..|.+++.+.....-. ........+...++.++...|+|++|+..|.+++.+
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~ 91 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL 91 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 3434444555566666666666654332110 011222335566777788888999999999999999
Q ss_pred cccchHHHHHhccchhhhhhHHHHhhhcccc
Q 007653 176 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNA 206 (594)
Q Consensus 176 dP~~~ka~~~rg~al~~lg~~~eAi~~lekA 206 (594)
+|.+-.+|..+-.+|...|++.+|+..|+++
T Consensus 92 dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 92 DPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 9999999999999999999999988888765
No 193
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.0013 Score=68.80 Aligned_cols=104 Identities=16% Similarity=0.124 Sum_probs=82.4
Q ss_pred ccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhh
Q 007653 113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD 192 (594)
Q Consensus 113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~ 192 (594)
+....+|..|+..++-.+.++.... ..+-.++|.||+++|+|++|+..|+.+..-+..+.+.+.+++.|+..
T Consensus 32 fls~rDytGAislLefk~~~~~EEE--------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy 103 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEE--------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFY 103 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhh--------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHH
Confidence 5667899999999888776554432 23567899999999999999999999998888889999999999999
Q ss_pred hhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653 193 IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (594)
Q Consensus 193 lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~ 228 (594)
+|.|.+|....++| |+.+--...+-.+.-++.
T Consensus 104 Lg~Y~eA~~~~~ka----~k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 104 LGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhC
Confidence 99999999888776 555554444444444443
No 194
>PRK10941 hypothetical protein; Provisional
Probab=96.23 E-value=0.001 Score=68.48 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=71.6
Q ss_pred ceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHh
Q 007653 142 RTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 221 (594)
Q Consensus 142 ~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~ 221 (594)
..+......|+-.+|.+.++|+.|+.+++..+.++|+++.-+.-||.+|.++|++..|+.||+..++..|+++.+.....
T Consensus 177 ~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 177 IEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 33445567899999999999999999999999999999999999999999999999999999999999999987654433
Q ss_pred H
Q 007653 222 D 222 (594)
Q Consensus 222 ~ 222 (594)
.
T Consensus 257 q 257 (269)
T PRK10941 257 Q 257 (269)
T ss_pred H
Confidence 3
No 195
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.23 E-value=0.0011 Score=45.39 Aligned_cols=34 Identities=35% Similarity=0.677 Sum_probs=29.5
Q ss_pred hHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007653 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213 (594)
Q Consensus 180 ~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~ 213 (594)
+++|+.+|.+|..+|++++|+.+|+++++++|+|
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3678999999999999999999999999998853
No 196
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.20 E-value=0.00058 Score=62.13 Aligned_cols=61 Identities=25% Similarity=0.306 Sum_probs=55.8
Q ss_pred ceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007653 153 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213 (594)
Q Consensus 153 a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~ 213 (594)
|.++...|+.+.|++.|.++|.+-|.++.+|.||+.+|.-.|+.++|++++++|+++.-+.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 3445668999999999999999999999999999999999999999999999999997654
No 197
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.14 E-value=0.00054 Score=47.75 Aligned_cols=34 Identities=24% Similarity=0.195 Sum_probs=30.9
Q ss_pred HHHHhhhccccccccccceeeeeecccCceeeeccccchhhhh
Q 007653 125 KYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK 167 (594)
Q Consensus 125 ~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~ 167 (594)
+|+++|+++|+++. +|+|+|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~---------a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAE---------AYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHH---------HHHHHHHHHHHCcCHHhhcC
Confidence 48999999999965 99999999999999999974
No 198
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.09 E-value=0.0088 Score=59.04 Aligned_cols=87 Identities=11% Similarity=0.023 Sum_probs=78.2
Q ss_pred HHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhh
Q 007653 87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166 (594)
Q Consensus 87 aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi 166 (594)
-+...+.+.+..+++.+..+.-+|..+...|+|+.|.+.|.-.++++|.. -+++.|||..++-.|+|.-|.
T Consensus 83 LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y---------~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 83 LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---------NYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred HHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc---------hHHHhccceeeeecCchHhhH
Confidence 44566777888899999999999999999999999999999999999998 458999999999999999999
Q ss_pred hhcceeeeecccchHH
Q 007653 167 KVGSEVLAYDAKNVKA 182 (594)
Q Consensus 167 ~~~~~AL~ldP~~~ka 182 (594)
+++.+--.-||+++--
T Consensus 154 ~d~~~fYQ~D~~DPfR 169 (297)
T COG4785 154 DDLLAFYQDDPNDPFR 169 (297)
T ss_pred HHHHHHHhcCCCChHH
Confidence 9999888888887743
No 199
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.00 E-value=0.0019 Score=71.07 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=99.1
Q ss_pred HHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHH
Q 007653 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR 185 (594)
Q Consensus 106 l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~ 185 (594)
+...|..+...|+...|+.++..|+.+.|.... .-.+|++.+.++-+-...|-..+.++|.++-..+-.+|.
T Consensus 610 ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~--------v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~ 681 (886)
T KOG4507|consen 610 LNEAGLYWRAVGNSTFAIACLQRALNLAPLQQD--------VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLS 681 (886)
T ss_pred eecccceeeecCCcHHHHHHHHHHhccChhhhc--------ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHh
Confidence 444566667889999999999999998887643 346899999999999999999999999999889999999
Q ss_pred hccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007653 186 RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 225 (594)
Q Consensus 186 rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~ 225 (594)
+|.+|+.+.+.+.|++.|+.|+.++|++.++..-|..+..
T Consensus 682 ~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 682 LGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred cchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999999999999999999888877755
No 200
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.92 E-value=0.0052 Score=56.72 Aligned_cols=122 Identities=23% Similarity=0.180 Sum_probs=88.2
Q ss_pred ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCce-eeeccccchhhhhhcceeeeec
Q 007653 98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS-CYLKTKQYDECIKVGSEVLAYD 176 (594)
Q Consensus 98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~-~~~klg~y~eAi~~~~~AL~ld 176 (594)
........+...+..+...++|..++..+.+++...+.... .+..... +|...+++..|+..+.+++.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 160 (291)
T COG0457 90 LLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL---------AEALLALGALYELGDYEEALELYEKALELD 160 (291)
T ss_pred hccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34555667777888888888888888888888876655421 2233333 7888888888888888888777
Q ss_pred c---cchHHHHHhccchhhhhhHHHHhhhcccccccCCC-CChHHHHHhHHHHHhh
Q 007653 177 A---KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD-DGTIADVLRDAKEILM 228 (594)
Q Consensus 177 P---~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~-~~~a~~~l~~a~~~l~ 228 (594)
| .....++.++..+...+++++|+..+.+++...+. ...+...+..+....+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 161 PELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 6 46677777777778888888888888888888887 4666666666555443
No 201
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.79 E-value=0.0024 Score=65.40 Aligned_cols=116 Identities=10% Similarity=0.053 Sum_probs=92.4
Q ss_pred ccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhh
Q 007653 113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD 192 (594)
Q Consensus 113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~ 192 (594)
+.+..+|.+||++..--.+..|.. .....-+|.||+..++|..|..+|++...+.|...++.+..+..++.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~---------rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRS---------RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK 90 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccc---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 467889999999988888877765 23567899999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653 193 IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (594)
Q Consensus 193 lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i 241 (594)
.+.+.+|+..+.... +++.++...-.++..++-.++.....+..+
T Consensus 91 A~i~ADALrV~~~~~----D~~~L~~~~lqLqaAIkYse~Dl~g~rsLv 135 (459)
T KOG4340|consen 91 ACIYADALRVAFLLL----DNPALHSRVLQLQAAIKYSEGDLPGSRSLV 135 (459)
T ss_pred hcccHHHHHHHHHhc----CCHHHHHHHHHHHHHHhcccccCcchHHHH
Confidence 999999998776543 446666666666777765554444433333
No 202
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=95.75 E-value=0.0018 Score=68.91 Aligned_cols=103 Identities=14% Similarity=0.233 Sum_probs=78.1
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhcccccc--------cc-ccceeeeeecccCceeeeccccchhhhhhcceeee
Q 007653 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIH--------SS-EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA 174 (594)
Q Consensus 104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~--------~~-e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ 174 (594)
+.....+..+|++++|..|+..|..+|+++..-. .. +...+...+...+..||+++++.+-|+...-+.|.
T Consensus 177 ~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ 256 (569)
T PF15015_consen 177 QVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN 256 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence 3444556667888888888888888888764321 10 01111122345688999999999999999999999
Q ss_pred ecccchHHHHHhccchhhhhhHHHHhhhcccc
Q 007653 175 YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA 206 (594)
Q Consensus 175 ldP~~~ka~~~rg~al~~lg~~~eAi~~lekA 206 (594)
++|.++.-|.+.+.|+..+.+|.+|.+.+-.|
T Consensus 257 lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 257 LNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998766544
No 203
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.74 E-value=0.0032 Score=70.61 Aligned_cols=128 Identities=13% Similarity=-0.058 Sum_probs=101.0
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka 182 (594)
...++-++..+-..|+|++|+.+..+||++.|..++ +|+..|.+|-+.|++.+|.+..+.|..+|+.+--.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~e---------ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyi 264 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVE---------LYMTKARILKHAGDLKEAAEAMDEARELDLADRYI 264 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHH
Confidence 466788888899999999999999999999999865 89999999999999999999999999999988888
Q ss_pred HHHhccchhhhhhHHHHhhhcccccccC--CCC-----ChHHHH--HhHHHHHhhhccCCCCCccc
Q 007653 183 LYRRGQAYKDIGRLEEAVSDLSNAHEVS--PDD-----GTIADV--LRDAKEILMKEDGHHGPRGL 239 (594)
Q Consensus 183 ~~~rg~al~~lg~~~eAi~~lekAl~l~--P~~-----~~a~~~--l~~a~~~l~~~~~a~~~~~~ 239 (594)
....+..+++.|++++|.+.+..-.+-+ |.. .-+|.. .+.+..+.+.+..+...+..
T Consensus 265 NsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~ 330 (517)
T PF12569_consen 265 NSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHA 330 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8888888899999999999887765544 211 123333 34445555555444444433
No 204
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.69 E-value=0.0054 Score=56.92 Aligned_cols=79 Identities=8% Similarity=0.030 Sum_probs=65.1
Q ss_pred ccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecccc--------------
Q 007653 96 MNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ-------------- 161 (594)
Q Consensus 96 ~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~-------------- 161 (594)
..+.+-..++.+.++..+++.++|.+|+..|++-|++.|..+. ...+++-+|.+++++..
T Consensus 40 yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~------vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~ 113 (142)
T PF13512_consen 40 YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN------VDYAYYMRGLSYYEQDEGSLQSFFRSDRDPT 113 (142)
T ss_pred CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC------ccHHHHHHHHHHHHHhhhHHhhhcccccCcH
Confidence 3344555678899999999999999999999999999999875 25688899999988877
Q ss_pred -chhhhhhcceeeeecccch
Q 007653 162 -YDECIKVGSEVLAYDAKNV 180 (594)
Q Consensus 162 -y~eAi~~~~~AL~ldP~~~ 180 (594)
...|..++.+.|..-|++.
T Consensus 114 ~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 114 PARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHHCcCCh
Confidence 7777888888777777664
No 205
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.58 E-value=0.0056 Score=64.12 Aligned_cols=114 Identities=11% Similarity=0.036 Sum_probs=84.4
Q ss_pred HHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc------
Q 007653 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN------ 179 (594)
Q Consensus 106 l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~------ 179 (594)
-.-.|.++|+.|+|++|+..|+-+.+-+... ..+++|++-|++-+|.|.+|.....++-+- |-.
T Consensus 60 ~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~---------~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~-pL~~RLlfh 129 (557)
T KOG3785|consen 60 QLWIAHCYFHLGDYEEALNVYTFLMNKDDAP---------AELGVNLACCKFYLGQYIEAKSIAEKAPKT-PLCIRLLFH 129 (557)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhccCCCC---------cccchhHHHHHHHHHHHHHHHHHHhhCCCC-hHHHHHHHH
Confidence 3346778999999999999999887744443 448999999999999999999877766421 111
Q ss_pred ---------------------hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 180 ---------------------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 180 ---------------------~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
.+-...++.+++..-+|.+||+.|.+.+.-+|++-.+.-.+..|..++.-
T Consensus 130 lahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDY 200 (557)
T KOG3785|consen 130 LAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDY 200 (557)
T ss_pred HHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcch
Confidence 11222355566666789999999999999888887776677777665543
No 206
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.46 E-value=0.0071 Score=38.84 Aligned_cols=33 Identities=36% Similarity=0.665 Sum_probs=28.9
Q ss_pred HHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007653 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213 (594)
Q Consensus 181 ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~ 213 (594)
.+|+++|.+|...+++++|+.+|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 578899999999999999999999999888753
No 207
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.36 E-value=0.0025 Score=70.94 Aligned_cols=118 Identities=14% Similarity=0.156 Sum_probs=93.0
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~ 163 (594)
.+..+..-+.......|+.+-.+...|..+...|+.++|++.|++++...... .++...|+..++.||.-+.+|+
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~-----~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW-----KQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH-----HhHHHHHHHHHHHHHHHHchHH
Confidence 34455555666666788899999999999999999999999999998543333 3455678999999999999999
Q ss_pred hhhhhcceeeeecc-cchHHHHHhccchhhhhhH-------HHHhhhcccc
Q 007653 164 ECIKVGSEVLAYDA-KNVKALYRRGQAYKDIGRL-------EEAVSDLSNA 206 (594)
Q Consensus 164 eAi~~~~~AL~ldP-~~~ka~~~rg~al~~lg~~-------~eAi~~lekA 206 (594)
+|..++.+.++.+. ..+-++|-.|.||..+++. ++|.+.++++
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 99999999987644 3456777789999999988 5555555544
No 208
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.28 E-value=0.0082 Score=55.36 Aligned_cols=105 Identities=24% Similarity=0.297 Sum_probs=85.5
Q ss_pred cccccccchhHHHHHHHhhhcccc-ccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc-chHHHHHhccc
Q 007653 112 ELYSEGRFSNALQKYLLAKKNLQG-IHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK-NVKALYRRGQA 189 (594)
Q Consensus 112 ~~~~~g~y~eAi~~Y~kAL~l~p~-~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~-~~ka~~~rg~a 189 (594)
.++..+++..|+..|.+++...+. .. ....+..++..+...+++.+++..+.+++...+. ....++.++.+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNE-------LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLL 211 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccc-------hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHH
Confidence 789999999999999999886652 11 1234555565577889999999999999999999 79999999999
Q ss_pred hhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007653 190 YKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 223 (594)
Q Consensus 190 l~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a 223 (594)
+...+++++|+..+..++...|........+..+
T Consensus 212 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 245 (291)
T COG0457 212 YLKLGKYEEALEYYEKALELDPDNAEALYNLALL 245 (291)
T ss_pred HHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHH
Confidence 9999999999999999999999844444444333
No 209
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.93 E-value=0.061 Score=56.26 Aligned_cols=112 Identities=9% Similarity=-0.010 Sum_probs=76.0
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee-cccchHH
Q 007653 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-DAKNVKA 182 (594)
Q Consensus 104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l-dP~~~ka 182 (594)
+.....+.+++.+|++.+|...+.+.|+-.|.+- .++...-.+|+-.|+...-...+++.|-. +++-+-+
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDl---------la~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~ 174 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDL---------LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCY 174 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhh---------hhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHH
Confidence 5566677788999999999999999999888873 23333344455566666666666676654 5555444
Q ss_pred HHH---hccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHH
Q 007653 183 LYR---RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK 224 (594)
Q Consensus 183 ~~~---rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~ 224 (594)
.|. .+.++.+.|-|++|.+..+++++++|.+.=+...+..+.
T Consensus 175 sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVl 219 (491)
T KOG2610|consen 175 SYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVL 219 (491)
T ss_pred HHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHH
Confidence 443 455667778888888888888888887754444444443
No 210
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.74 E-value=0.012 Score=39.67 Aligned_cols=33 Identities=30% Similarity=0.540 Sum_probs=29.4
Q ss_pred HHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007653 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213 (594)
Q Consensus 181 ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~ 213 (594)
.++|++|.+|..+|++++|+..|++.+...|+.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999888863
No 211
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=94.71 E-value=0.015 Score=67.98 Aligned_cols=89 Identities=12% Similarity=0.016 Sum_probs=57.1
Q ss_pred HHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHH
Q 007653 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR 185 (594)
Q Consensus 106 l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~ 185 (594)
|..+...+.+.|++++|.+.|++.- ..|. ...|..+..++...|+++.|...+++.++++|++...|..
T Consensus 465 y~~li~~l~r~G~~~eA~~~~~~~~-~~p~----------~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~ 533 (697)
T PLN03081 465 YACMIELLGREGLLDEAYAMIRRAP-FKPT----------VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVV 533 (697)
T ss_pred hHhHHHHHHhcCCHHHHHHHHHHCC-CCCC----------HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHH
Confidence 4444455666666666666665431 1111 2345666666666777777777777777777777777777
Q ss_pred hccchhhhhhHHHHhhhccc
Q 007653 186 RGQAYKDIGRLEEAVSDLSN 205 (594)
Q Consensus 186 rg~al~~lg~~~eAi~~lek 205 (594)
+..+|...|++++|.+.++.
T Consensus 534 L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 534 LLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHH
Confidence 77777777777777776653
No 212
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.61 E-value=0.022 Score=56.89 Aligned_cols=173 Identities=18% Similarity=0.187 Sum_probs=111.9
Q ss_pred HHHhhhhhccCCCchhh----hhhhhhcCCChhHHHHHHHHhhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccc
Q 007653 40 MRIATENMKNMRPEDLK----CAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYS 115 (594)
Q Consensus 40 ~r~A~e~mk~~~pe~~~----~a~e~l~~~~pee~~~~~~~~~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~ 115 (594)
.+.|-=.++..+..|.. .+....+...|++...- +..+.+-|...+++.. .+..+..+|..|-.
T Consensus 58 lkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~c-----------L~~aieIyt~~Grf~~-aAk~~~~iaEiyEs 125 (288)
T KOG1586|consen 58 LKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNC-----------LEKAIEIYTDMGRFTM-AAKHHIEIAEIYES 125 (288)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHH-----------HHHHHHHHHhhhHHHH-HHhhhhhHHHHHhh
Confidence 33333345555554443 35666666777765552 3334444444444433 25567777777766
Q ss_pred c-ccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc------h-HHHHHhc
Q 007653 116 E-GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN------V-KALYRRG 187 (594)
Q Consensus 116 ~-g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~------~-ka~~~rg 187 (594)
. .+++.||.+|+++-+....... ...--.|++..+..--.+++|.+||..|+++..-.-+| + ..++.-|
T Consensus 126 dl~d~ekaI~~YE~Aae~yk~ees---~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAg 202 (288)
T KOG1586|consen 126 DLQDFEKAIAHYEQAAEYYKGEES---VSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAG 202 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHcchhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHH
Confidence 5 8999999999999987665532 11222356666666677899999999998887554433 2 3566678
Q ss_pred cchhhhhhHHHHhhhcccccccCCCCChH--HHHHhHHHHHh
Q 007653 188 QAYKDIGRLEEAVSDLSNAHEVSPDDGTI--ADVLRDAKEIL 227 (594)
Q Consensus 188 ~al~~lg~~~eAi~~lekAl~l~P~~~~a--~~~l~~a~~~l 227 (594)
.||+...+.-.+...+++...++|..... ...|..+...+
T Consensus 203 LChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~ai 244 (288)
T KOG1586|consen 203 LCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAI 244 (288)
T ss_pred HHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHH
Confidence 89988888888999999999999987543 34445544444
No 213
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.59 E-value=0.0087 Score=54.80 Aligned_cols=83 Identities=12% Similarity=0.213 Sum_probs=67.4
Q ss_pred ecccCceeeeccc---cchhhhhhcceeee-ecc-cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007653 148 CSLNSMSCYLKTK---QYDECIKVGSEVLA-YDA-KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 222 (594)
Q Consensus 148 ~~~N~a~~~~klg---~y~eAi~~~~~AL~-ldP-~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~ 222 (594)
+.+|++.|+.+.. +..+-|..++..++ -+| ..-.++|.++..|+++|+|+.++.+++..++.+|+|..+...-..
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ 113 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKET 113 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 4567777776654 55667777777775 444 357799999999999999999999999999999999999998888
Q ss_pred HHHHhhhc
Q 007653 223 AKEILMKE 230 (594)
Q Consensus 223 a~~~l~~~ 230 (594)
++.++.+.
T Consensus 114 ied~itke 121 (149)
T KOG3364|consen 114 IEDKITKE 121 (149)
T ss_pred HHHHHhhc
Confidence 88888653
No 214
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.39 E-value=0.0061 Score=42.80 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=21.8
Q ss_pred HHHHhccchhhhhhHHHHhhhcccccccC
Q 007653 182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVS 210 (594)
Q Consensus 182 a~~~rg~al~~lg~~~eAi~~lekAl~l~ 210 (594)
+|.++|.+|..+|+|++|+.+|+++|.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46788888888888888888888866543
No 215
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.28 E-value=0.044 Score=60.08 Aligned_cols=133 Identities=14% Similarity=0.052 Sum_probs=91.7
Q ss_pred HHHHHhhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccc-------------
Q 007653 72 EIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------------- 138 (594)
Q Consensus 72 ~~~~~~~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~------------- 138 (594)
....++|.....+ +-.+.++++++.+++.+.+|.-++..... -..+|.++|+++++..+..-.
T Consensus 173 ~IMq~AWRERnp~--aRIkaA~eALei~pdCAdAYILLAEEeA~--Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e 248 (539)
T PF04184_consen 173 EIMQKAWRERNPQ--ARIKAAKEALEINPDCADAYILLAEEEAS--TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWE 248 (539)
T ss_pred HHHHHHHhcCCHH--HHHHHHHHHHHhhhhhhHHHhhccccccc--CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhh
Confidence 3344455443332 23344566677788888888777654322 235677777777664332110
Q ss_pred ---cccceeeeeecccCceeeeccccchhhhhhcceeeeeccc--chHHHHHhccchhhhhhHHHHhhhcccccc
Q 007653 139 ---SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--NVKALYRRGQAYKDIGRLEEAVSDLSNAHE 208 (594)
Q Consensus 139 ---~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~--~~ka~~~rg~al~~lg~~~eAi~~lekAl~ 208 (594)
.........+...+|.|..++|+.+|||+.+...++..|. +...++++-.+|..+++|.++...+.+--.
T Consensus 249 ~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 249 AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 0122334556678899999999999999999999988774 677999999999999999999999887543
No 216
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=0.011 Score=59.31 Aligned_cols=81 Identities=12% Similarity=-0.001 Sum_probs=67.5
Q ss_pred ecccCceeeeccccchhhhhhcceeeee--------cc----------cchHHHHHhccchhhhhhHHHHhhhccccccc
Q 007653 148 CSLNSMSCYLKTKQYDECIKVGSEVLAY--------DA----------KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 209 (594)
Q Consensus 148 ~~~N~a~~~~klg~y~eAi~~~~~AL~l--------dP----------~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l 209 (594)
+....|.-++++|+|.+|+..|..||.. .| .....+.|...|++..|+|-++++.+...|..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 4456777889999999999999999743 22 23447889999999999999999999999999
Q ss_pred CCCCChHHHHHhHHHHHhh
Q 007653 210 SPDDGTIADVLRDAKEILM 228 (594)
Q Consensus 210 ~P~~~~a~~~l~~a~~~l~ 228 (594)
+|.|.+++...+++....=
T Consensus 260 ~~~nvKA~frRakAhaa~W 278 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVW 278 (329)
T ss_pred CCchHHHHHHHHHHHHhhc
Confidence 9999999988888755543
No 217
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=93.99 E-value=0.049 Score=58.04 Aligned_cols=127 Identities=13% Similarity=0.100 Sum_probs=92.1
Q ss_pred HhcChhH-HHHhhhhhccCCCchhhhhhhhh-cC-CChhHHHHHHHHhhcCChHHHHHHHHhhhhcccccchHHHHHHHh
Q 007653 33 MMANPEL-MRIATENMKNMRPEDLKCAAEQL-TH-TPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQ 109 (594)
Q Consensus 33 m~~~p~l-~r~A~e~mk~~~pe~~~~a~e~l-~~-~~pee~~~~~~~~~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~ 109 (594)
+-.+|++ +..|.+.+.-...++.....++. .+ .+++ +. ..+....+.+.....+.++..+...++.+..+..+
T Consensus 259 lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~---~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tL 334 (400)
T COG3071 259 LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LC---RLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTL 334 (400)
T ss_pred hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HH---HHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHH
Confidence 3446884 44455555555556665544443 22 2333 33 33444455555556677777777888889999999
Q ss_pred cccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceee
Q 007653 110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL 173 (594)
Q Consensus 110 Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL 173 (594)
|..+++.+.|.+|-.+|+.+|..-|... .|.-+|.+|.++|+..+|-+.+++++
T Consensus 335 G~L~~k~~~w~kA~~~leaAl~~~~s~~----------~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 335 GRLALKNKLWGKASEALEAALKLRPSAS----------DYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhcCCChh----------hHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 9999999999999999999999887764 57889999999999999998888876
No 218
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.90 E-value=0.029 Score=39.33 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=25.1
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhccc
Q 007653 105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQ 134 (594)
Q Consensus 105 ~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p 134 (594)
+|.++|+.+.+.|+|++|+.+|+++|.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 478899999999999999999999776543
No 219
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.88 E-value=0.052 Score=52.89 Aligned_cols=103 Identities=16% Similarity=0.082 Sum_probs=80.9
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc-h
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-V 180 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~-~ 180 (594)
..-....++..++..+++++|+..++.++..-.+. .+...+-.+++.+.+.+|+|++|+..++..- ++.+ +
T Consensus 88 a~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De------~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~ 159 (207)
T COG2976 88 AVLAALELAKAEVEANNLDKAEAQLKQALAQTKDE------NLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAA 159 (207)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhH------HHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHH
Confidence 34566777888999999999999999998643222 2334466889999999999999999887754 2222 2
Q ss_pred HHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007653 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212 (594)
Q Consensus 181 ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~ 212 (594)
..-..||.+|...|+-++|+..|++++..+++
T Consensus 160 ~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 160 IVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 34667999999999999999999999998743
No 220
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.85 E-value=0.023 Score=56.52 Aligned_cols=61 Identities=13% Similarity=0.268 Sum_probs=56.4
Q ss_pred eeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215 (594)
Q Consensus 155 ~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~ 215 (594)
...+-++++.|.+.|.+++++-|.+...|+++|......|+++.|.+.|++.++++|++--
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 3456789999999999999999999999999999999999999999999999999998643
No 221
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.84 E-value=0.033 Score=37.91 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=29.7
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhcccc
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG 135 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~ 135 (594)
++.+..+|.++...|++++|+.+|+++++++|+
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 357899999999999999999999999999873
No 222
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.73 E-value=0.011 Score=62.25 Aligned_cols=104 Identities=18% Similarity=0.235 Sum_probs=85.8
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc-----
Q 007653 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK----- 178 (594)
Q Consensus 104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~----- 178 (594)
..+.-+|+.+...+.|+++++.|++|+++.....+ .-+...+|+.++..|-++++|++|+-+..+|.++--.
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D---~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d 199 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD---AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKD 199 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC---ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCc
Confidence 45666889999999999999999999987665533 2344668899999999999999999999998876322
Q ss_pred -----chHHHHHhccchhhhhhHHHHhhhcccccccC
Q 007653 179 -----NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 210 (594)
Q Consensus 179 -----~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~ 210 (594)
..-++|+.+.+|..+|++-+|.++++.|.++.
T Consensus 200 ~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 200 WSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 23468889999999999999999999987764
No 223
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=93.66 E-value=0.042 Score=56.79 Aligned_cols=115 Identities=11% Similarity=0.083 Sum_probs=81.6
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka 182 (594)
+....+.+....+.|+.++|...|..|+.+.|.+++ ++...|.....-++.-+|-.+|.+||.++|.|.++
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~---------~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQ---------ILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHH---------HHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 344445556678889999999999999999999976 56677777777788888999999999999999999
Q ss_pred HHHhccchhhhhh----HHHHhhhcccccccCCC-CChHHHHHhHHHHH
Q 007653 183 LYRRGQAYKDIGR----LEEAVSDLSNAHEVSPD-DGTIADVLRDAKEI 226 (594)
Q Consensus 183 ~~~rg~al~~lg~----~~eAi~~lekAl~l~P~-~~~a~~~l~~a~~~ 226 (594)
+.+|+...--... +-+.+......+..-++ |..++...++..+.
T Consensus 187 LvnR~RT~plV~~iD~r~l~svdskrd~~~~i~~sN~ALRR~m~EtYf~ 235 (472)
T KOG3824|consen 187 LVNRARTTPLVSAIDRRMLRSVDSKRDEFNHIQHSNTALRRMMRETYFL 235 (472)
T ss_pred HhhhhccchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 9999877643332 33344444444443343 34455555555443
No 224
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.62 E-value=0.057 Score=57.52 Aligned_cols=181 Identities=13% Similarity=0.062 Sum_probs=115.0
Q ss_pred hcChh-HHHH--hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHH-hhcCChHHHHHHHHhhhhcccccchHHHHHHHh
Q 007653 34 MANPE-LMRI--ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQ 109 (594)
Q Consensus 34 ~~~p~-l~r~--A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~-~~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~ 109 (594)
-+|.+ |++. |.-.+-..+.++.++.++.+..-+.-.+..+... +....-...+++...........+....+....
T Consensus 115 ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~At 194 (531)
T COG3898 115 SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARAT 194 (531)
T ss_pred hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHH
Confidence 34544 7776 4444667888899999998877644333333222 112222223344443333344455555566665
Q ss_pred cccccccccchhHHHHHHHhhhc---cccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHh
Q 007653 110 GNELYSEGRFSNALQKYLLAKKN---LQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRR 186 (594)
Q Consensus 110 Gn~~~~~g~y~eAi~~Y~kAL~l---~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~r 186 (594)
=...+..|+|+.|+++....... .+... ......++.-.+...+ --+...|..+..++++|.|+.+-+-..-
T Consensus 195 Le~r~~~gdWd~AlkLvd~~~~~~vie~~~a----eR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~A 269 (531)
T COG3898 195 LEARCAAGDWDGALKLVDAQRAAKVIEKDVA----ERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVA 269 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHhhchhhH----HHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHH
Confidence 56678999999999998766542 12211 1111112222222222 2357889999999999999999999999
Q ss_pred ccchhhhhhHHHHhhhcccccccCCCCChHHHHH
Q 007653 187 GQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL 220 (594)
Q Consensus 187 g~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l 220 (594)
+.+|++.|+..++-..++.+-+.+|+ +.+...+
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY 302 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPH-PDIALLY 302 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHH
Confidence 99999999999999999999999885 4444433
No 225
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.01 E-value=0.11 Score=53.79 Aligned_cols=56 Identities=25% Similarity=0.244 Sum_probs=43.8
Q ss_pred eeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCC--CChHHHHHhHHHHHhh
Q 007653 173 LAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD--DGTIADVLRDAKEILM 228 (594)
Q Consensus 173 L~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~--~~~a~~~l~~a~~~l~ 228 (594)
+..||++..+-+-++..|...|++++|++.|-..++.+-. +..+++.+-.+.+.++
T Consensus 229 ~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 229 LAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 4458999999999999999999999999988887777653 4566666666666654
No 226
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=92.96 E-value=0.14 Score=59.87 Aligned_cols=116 Identities=9% Similarity=-0.073 Sum_probs=85.9
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHH
Q 007653 105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY 184 (594)
Q Consensus 105 ~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~ 184 (594)
.+..+-..+.+.|++++|..+|.+..+.....|. ...|..+..+|.+.|++++|.+.+++.- ..| +...|.
T Consensus 428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~-------~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~ 498 (697)
T PLN03081 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR-------AMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWA 498 (697)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-------ccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHH
Confidence 3555556677888888888888877653333332 3467778888999999999999887652 334 455688
Q ss_pred HhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 185 ~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
.+..++...|+++.|...+++.++++|++...+..+..+..+.++
T Consensus 499 ~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 499 ALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence 888888899999999999999999999887777777666555544
No 227
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=92.93 E-value=0.051 Score=56.18 Aligned_cols=72 Identities=17% Similarity=0.108 Sum_probs=63.3
Q ss_pred cCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007653 151 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 222 (594)
Q Consensus 151 N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~ 222 (594)
+.+.-.++.|+.++|...+..|++++|+++.++...|...-.-.+.-+|-.+|-+||.++|.|.++.-+...
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 334445678999999999999999999999999999999998899999999999999999999887665544
No 228
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=92.70 E-value=0.038 Score=63.97 Aligned_cols=143 Identities=14% Similarity=0.062 Sum_probs=104.7
Q ss_pred cCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec
Q 007653 79 NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK 158 (594)
Q Consensus 79 ~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k 158 (594)
..+..++..+.+...+-++..++..-+..-.|..+++.|++++|..++ +++...+... ....--+-.||..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~L-e~~~~~~~~D--------~~tLq~l~~~y~d 89 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLL-EALYGLKGTD--------DLTLQFLQNVYRD 89 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHH-hhhccCCCCc--------hHHHHHHHHHHHH
Confidence 345567777888888888888998888888899999999999999554 4444433332 1244567889999
Q ss_pred cccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC-hHHHHHhHHHHHhhhcc
Q 007653 159 TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG-TIADVLRDAKEILMKED 231 (594)
Q Consensus 159 lg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~-~a~~~l~~a~~~l~~~~ 231 (594)
++++++|+..|++++..+|. .+.++.+=.||.+.+.|.+=-+.--+..+..|+++ -.|..+..+...+...+
T Consensus 90 ~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~ 162 (932)
T KOG2053|consen 90 LGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSEN 162 (932)
T ss_pred HhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCc
Confidence 99999999999999999999 88999999999999988763333222333557664 35566665555554443
No 229
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=92.58 E-value=0.056 Score=62.65 Aligned_cols=98 Identities=20% Similarity=0.232 Sum_probs=82.0
Q ss_pred ccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhh
Q 007653 113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD 192 (594)
Q Consensus 113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~ 192 (594)
....++|+.|+....+.++..|+.+ ++..-.|..+.++|++++|..+++..-.+-+++-..+-.+-.||.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~---------~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d 89 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNAL---------YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRD 89 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcH---------HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHH
Confidence 5677899999999999999888874 3555678889999999999977766666677788888899999999
Q ss_pred hhhHHHHhhhcccccccCCCCChHHHHH
Q 007653 193 IGRLEEAVSDLSNAHEVSPDDGTIADVL 220 (594)
Q Consensus 193 lg~~~eAi~~lekAl~l~P~~~~a~~~l 220 (594)
++++++|+..|++++..+|. .+....+
T Consensus 90 ~~~~d~~~~~Ye~~~~~~P~-eell~~l 116 (932)
T KOG2053|consen 90 LGKLDEAVHLYERANQKYPS-EELLYHL 116 (932)
T ss_pred HhhhhHHHHHHHHHHhhCCc-HHHHHHH
Confidence 99999999999999999998 4443333
No 230
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.55 E-value=0.19 Score=51.19 Aligned_cols=92 Identities=16% Similarity=0.143 Sum_probs=71.5
Q ss_pred cccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhh
Q 007653 116 EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR 195 (594)
Q Consensus 116 ~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~ 195 (594)
.+++.+|.-+|++.-+..+..+ ...+-.+.|++.+++|++|...++.+|..+++++..+.|+-.+-..+|.
T Consensus 186 gek~qdAfyifeE~s~k~~~T~---------~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTP---------LLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGK 256 (299)
T ss_pred chhhhhHHHHHHHHhcccCCCh---------HHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence 4458899999998877333332 3567789999999999999999999999999999999999999999998
Q ss_pred HHHHhhhc-ccccccCCCCChH
Q 007653 196 LEEAVSDL-SNAHEVSPDDGTI 216 (594)
Q Consensus 196 ~~eAi~~l-ekAl~l~P~~~~a 216 (594)
-.++...+ .+....+|+++-+
T Consensus 257 d~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 257 DAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred ChHHHHHHHHHHHhcCCcchHH
Confidence 87766544 4445556766543
No 231
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.18 E-value=0.033 Score=60.68 Aligned_cols=90 Identities=13% Similarity=0.099 Sum_probs=71.3
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhcc-c----cccc----cccceeeeeecccCceeeeccccchhhhhhcceee
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNL-Q----GIHS----SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL 173 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~-p----~~~~----~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL 173 (594)
.-.+.++|.++|+.+.|.-++.+|.+||+.. . .... .-...-...+.||+|..|+..|+...|.++|.++.
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av 362 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV 362 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence 3457899999999999999999999999621 1 1000 00111223467999999999999999999999999
Q ss_pred eecccchHHHHHhccchhh
Q 007653 174 AYDAKNVKALYRRGQAYKD 192 (594)
Q Consensus 174 ~ldP~~~ka~~~rg~al~~ 192 (594)
..-..++..|.|++.|...
T Consensus 363 ~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 363 HVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHhcCcHHHHHHHHHHHH
Confidence 9999999999999999864
No 232
>PLN03077 Protein ECB2; Provisional
Probab=91.99 E-value=0.074 Score=63.62 Aligned_cols=91 Identities=12% Similarity=0.023 Sum_probs=70.7
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka 182 (594)
...|..+...+.+.|++++|.+.+++. .+.|+. .+|..+-.++...++.+.+....+++++++|++...
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~----------~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~ 693 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKM-PITPDP----------AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGY 693 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCH----------HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Confidence 456777778888899999999888874 233332 245555455566788888888888889999999999
Q ss_pred HHHhccchhhhhhHHHHhhhcc
Q 007653 183 LYRRGQAYKDIGRLEEAVSDLS 204 (594)
Q Consensus 183 ~~~rg~al~~lg~~~eAi~~le 204 (594)
|..++.+|...|+|++|.+..+
T Consensus 694 y~ll~n~ya~~g~~~~a~~vr~ 715 (857)
T PLN03077 694 YILLCNLYADAGKWDEVARVRK 715 (857)
T ss_pred HHHHHHHHHHCCChHHHHHHHH
Confidence 9999999999999999988765
No 233
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=91.95 E-value=0.098 Score=44.87 Aligned_cols=65 Identities=25% Similarity=0.202 Sum_probs=52.6
Q ss_pred hhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC--ChHHHHHhHHHHHhhh
Q 007653 165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD--GTIADVLRDAKEILMK 229 (594)
Q Consensus 165 Ai~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~--~~a~~~l~~a~~~l~~ 229 (594)
.+..++++++.+|++..+.|.++.+|...|+|++|++.|-..+..++++ ..++..+-.+-..++.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3556778888999999999999999999999999999999999999876 6677777777777654
No 234
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=91.87 E-value=0.042 Score=57.01 Aligned_cols=113 Identities=9% Similarity=-0.042 Sum_probs=79.2
Q ss_pred HHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec-cccchhhhhhcceeeeecccchHHHH
Q 007653 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK-TKQYDECIKVGSEVLAYDAKNVKALY 184 (594)
Q Consensus 106 l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k-lg~y~eAi~~~~~AL~ldP~~~ka~~ 184 (594)
|....+...+.+..+.|-..|.+|++..+.. ..+|...|...++ .++.+.|...|+.+++.-|.+...|.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~---------~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~ 74 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCT---------YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWL 74 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS----------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCC---------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 3444455556666888888899998644433 2367777777555 56666699999999999999999888
Q ss_pred HhccchhhhhhHHHHhhhcccccccCCCCC---hHHHHHhHHHHHh
Q 007653 185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDG---TIADVLRDAKEIL 227 (594)
Q Consensus 185 ~rg~al~~lg~~~eAi~~lekAl~l~P~~~---~a~~~l~~a~~~l 227 (594)
....-+..+++.+.|...|++++..-|... .+|..+-.-+...
T Consensus 75 ~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~ 120 (280)
T PF05843_consen 75 EYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKY 120 (280)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHc
Confidence 888888899999999999999998877654 3555444444433
No 235
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=91.64 E-value=0.016 Score=44.75 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=32.4
Q ss_pred ecccCceeeeccccchhhhhhcceeeeecccchHHHHHh
Q 007653 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRR 186 (594)
Q Consensus 148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~r 186 (594)
|++.+|..|+++|+|.+|..+++.+|+++|+|..+...+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 567788999999999999999999999999998875443
No 236
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.63 E-value=0.1 Score=34.90 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=29.0
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhcccc
Q 007653 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQG 135 (594)
Q Consensus 104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~ 135 (594)
++++.+|.++++.|++++|+..|++++...|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 36888999999999999999999999998775
No 237
>PRK04841 transcriptional regulator MalT; Provisional
Probab=91.58 E-value=0.024 Score=67.82 Aligned_cols=105 Identities=14% Similarity=0.058 Sum_probs=78.7
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc-----
Q 007653 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK----- 178 (594)
Q Consensus 104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~----- 178 (594)
..+..+|..++..|+|++|+..|.+++........ ......++.+++.+++..|++++|...+.+++.+-..
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~---~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 568 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDV---YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ 568 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc---hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 45667788888899999999999999876543321 0011235678899999999999999999998875221
Q ss_pred ---chHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007653 179 ---NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 211 (594)
Q Consensus 179 ---~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P 211 (594)
....+..+|.++...|++++|...+++++.+..
T Consensus 569 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 569 LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 233466788899999999999999999887643
No 238
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.52 E-value=0.054 Score=60.67 Aligned_cols=102 Identities=19% Similarity=0.239 Sum_probs=80.7
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHH
Q 007653 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL 183 (594)
Q Consensus 104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~ 183 (594)
..+.+.+..+|+..+|..+++.|...+...|.+-. ....+....+++.||+++.+.+.|++.+.+|-+.||.++-..
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~---~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q 431 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNY---SDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQ 431 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhh---hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHH
Confidence 46778888999999999999999999998887632 122245667888899999999999999999988888888777
Q ss_pred HHhccchhhhhhHHHHhhhcccccc
Q 007653 184 YRRGQAYKDIGRLEEAVSDLSNAHE 208 (594)
Q Consensus 184 ~~rg~al~~lg~~~eAi~~lekAl~ 208 (594)
+..-.+...-+.-++|+..+.+...
T Consensus 432 ~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 432 LLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHh
Confidence 7777777777777887777665544
No 239
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=91.33 E-value=0.11 Score=33.00 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=28.4
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhcccc
Q 007653 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQG 135 (594)
Q Consensus 104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~ 135 (594)
..+..+|..++..++|++|+..|.+++++.|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 36788999999999999999999999987764
No 240
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.88 E-value=0.082 Score=53.83 Aligned_cols=118 Identities=17% Similarity=0.039 Sum_probs=85.2
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHH
Q 007653 105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY 184 (594)
Q Consensus 105 ~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~ 184 (594)
...-.-+++.+..+++-|....++..+++.+..- .-++.+|++++.- ..++.+|.-.|++.-..-|..+..+.
T Consensus 139 ~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tL----tQLA~awv~la~g---gek~qdAfyifeE~s~k~~~T~~lln 211 (299)
T KOG3081|consen 139 AAALNVQILLKMHRFDLAEKELKKMQQIDEDATL----TQLAQAWVKLATG---GEKIQDAFYIFEELSEKTPPTPLLLN 211 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHH----HHHHHHHHHHhcc---chhhhhHHHHHHHHhcccCCChHHHc
Confidence 3333444566667777777777777766554310 0012234444322 34688999999988887777888999
Q ss_pred HhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 185 ~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
..+.|+..+|+|++|...++.||.-++++++...++-.+-..++.
T Consensus 212 G~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 212 GQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGK 256 (299)
T ss_pred cHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999988888777555543
No 241
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.83 E-value=0.044 Score=56.06 Aligned_cols=74 Identities=24% Similarity=0.328 Sum_probs=67.1
Q ss_pred eeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHH
Q 007653 145 LLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD 218 (594)
Q Consensus 145 ~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~ 218 (594)
......|+-..|.+.++++.|..+..+.|.++|.++..+--||.+|.++|.+.-|+.+++..++..|+++.+..
T Consensus 180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 34456788888999999999999999999999999999999999999999999999999999999999876543
No 242
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.74 E-value=0.062 Score=58.99 Aligned_cols=108 Identities=15% Similarity=0.144 Sum_probs=81.3
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee-cccchH
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-DAKNVK 181 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l-dP~~~k 181 (594)
.-..+.++.++.+.|+.++||+.|.+.++.+|.... ..++.|+-.|++.+++|.++-..+.+-=++ -|+.+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~-------l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAt 331 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN-------LNIRENLIEALLELQAYADVQALLAKYDDISLPKSAT 331 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch-------hhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHH
Confidence 344566888999999999999999999988776432 447899999999999999998887775433 267777
Q ss_pred HHHHhccchhh-hhh---------------HHHHhhhcccccccCCCCChHH
Q 007653 182 ALYRRGQAYKD-IGR---------------LEEAVSDLSNAHEVSPDDGTIA 217 (594)
Q Consensus 182 a~~~rg~al~~-lg~---------------~~eAi~~lekAl~l~P~~~~a~ 217 (594)
..|..+....+ .++ -..|++.+++|++.+|+-++..
T Consensus 332 i~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 332 ICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred HHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 77777665433 221 1347788999999999876543
No 243
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.60 E-value=0.038 Score=66.14 Aligned_cols=108 Identities=14% Similarity=0.051 Sum_probs=82.2
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecc-----
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA----- 177 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP----- 177 (594)
+..+..+|..++..|++.+|..++.+++.+....... .......++.+++.+++..|++++|...+.+++.+..
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 609 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE-QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ 609 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc-cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch
Confidence 3466778889999999999999999999875443110 0011122355778889999999999999999887532
Q ss_pred cchHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007653 178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 211 (594)
Q Consensus 178 ~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P 211 (594)
....++..+|.++...|++++|...+++++.+..
T Consensus 610 ~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 610 QQLQCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 2466777899999999999999999999977643
No 244
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=90.39 E-value=0.13 Score=62.17 Aligned_cols=102 Identities=13% Similarity=0.031 Sum_probs=61.2
Q ss_pred hhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHH
Q 007653 120 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEA 199 (594)
Q Consensus 120 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eA 199 (594)
+...+.|++|-+++... .+|..|.-+|.+..+|.+|.+.++.-++.--...+.|...|..+++..+-++|
T Consensus 1514 esl~kVFeRAcqycd~~----------~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa 1583 (1710)
T KOG1070|consen 1514 ESLKKVFERACQYCDAY----------TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAA 1583 (1710)
T ss_pred HHHHHHHHHHHHhcchH----------HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHH
Confidence 44445566665554332 25556666666666666666666666655555566666666666666666666
Q ss_pred hhhcccccccCCC--CChHHHHHhHHHHHhhhcc
Q 007653 200 VSDLSNAHEVSPD--DGTIADVLRDAKEILMKED 231 (594)
Q Consensus 200 i~~lekAl~l~P~--~~~a~~~l~~a~~~l~~~~ 231 (594)
...+.+|++.-|. |.++......++++.++.+
T Consensus 1584 ~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1584 RELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred HHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence 6666666666665 4555555555555555543
No 245
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=90.13 E-value=0.077 Score=51.44 Aligned_cols=104 Identities=13% Similarity=0.021 Sum_probs=81.4
Q ss_pred cchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeee-ecccchHHHHHhccchhhhhhH
Q 007653 118 RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA-YDAKNVKALYRRGQAYKDIGRL 196 (594)
Q Consensus 118 ~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~-ldP~~~ka~~~rg~al~~lg~~ 196 (594)
+.+..+..-.+.+++.|... -.+.++..+.++|+|.||...|.+++. +--+++..+.-++.+...++++
T Consensus 71 dP~R~~Rea~~~~~~ApTvq----------nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 71 DPERHLREATEELAIAPTVQ----------NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred ChhHHHHHHHHHHhhchhHH----------HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence 44555555556666666654 367889999999999999999999874 4567888999999999999999
Q ss_pred HHHhhhcccccccCCCC--ChHHHHHhHHHHHhhhcc
Q 007653 197 EEAVSDLSNAHEVSPDD--GTIADVLRDAKEILMKED 231 (594)
Q Consensus 197 ~eAi~~lekAl~l~P~~--~~a~~~l~~a~~~l~~~~ 231 (594)
.+|...+++..+.+|.. +.-.-.++.+...++++.
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a 177 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYA 177 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCch
Confidence 99999999999999975 455566666666665544
No 246
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=89.92 E-value=0.083 Score=52.68 Aligned_cols=97 Identities=18% Similarity=0.172 Sum_probs=70.6
Q ss_pred cccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecccc-------chhhhhhcceeeeecc------c
Q 007653 112 ELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ-------YDECIKVGSEVLAYDA------K 178 (594)
Q Consensus 112 ~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~-------y~eAi~~~~~AL~ldP------~ 178 (594)
.+.....+++|+..|.-||-...-.. +.....+.+++.+|.+|+.+++ +..|++.|.+++.... +
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~--~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~ 163 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKK--EKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMD 163 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCch
Confidence 56667788999999998876432111 1111345678889999999988 4455666666654432 3
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccC
Q 007653 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 210 (594)
Q Consensus 179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~ 210 (594)
.....|.+|..+.++|++++|+.+|.+.+..-
T Consensus 164 ~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 164 EATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 46789999999999999999999999998654
No 247
>PLN03218 maturation of RBCL 1; Provisional
Probab=89.71 E-value=0.15 Score=62.15 Aligned_cols=92 Identities=11% Similarity=0.005 Sum_probs=48.6
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhc--cccccccccceeeeeecccCceeeeccccchhhhhhcceeeeec-ccchH
Q 007653 105 MLKKQGNELYSEGRFSNALQKYLLAKKN--LQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD-AKNVK 181 (594)
Q Consensus 105 ~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l--~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ld-P~~~k 181 (594)
.|..+...|.+.|++++|+..|.+..+. .|+ ...|..+..+|.+.|++++|++.+.+.++.. +.+..
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD----------~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD----------EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 3444444555666666666666655542 122 1234445555555556666665555555432 22444
Q ss_pred HHHHhccchhhhhhHHHHhhhcccc
Q 007653 182 ALYRRGQAYKDIGRLEEAVSDLSNA 206 (594)
Q Consensus 182 a~~~rg~al~~lg~~~eAi~~lekA 206 (594)
.|..+..+|.+.|++++|++.|++.
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5555555666666666666665544
No 248
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=89.53 E-value=0.16 Score=46.68 Aligned_cols=78 Identities=12% Similarity=0.028 Sum_probs=58.6
Q ss_pred chHHHHHHHhccccccccc---chhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeec
Q 007653 100 FNAAKMLKKQGNELYSEGR---FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD 176 (594)
Q Consensus 100 ~~~a~~l~~~Gn~~~~~g~---y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ld 176 (594)
.-..+..++++..+.+..+ -.+.|.+++..+...+... .-.|.+-++..|+++++|+.++.+++..|+.+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~-------rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPER-------RRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCccc-------chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 3345677777777766554 4678888988886222221 13477889999999999999999999999999
Q ss_pred ccchHHHH
Q 007653 177 AKNVKALY 184 (594)
Q Consensus 177 P~~~ka~~ 184 (594)
|+|..+.-
T Consensus 102 ~~n~Qa~~ 109 (149)
T KOG3364|consen 102 PNNRQALE 109 (149)
T ss_pred CCcHHHHH
Confidence 99987643
No 249
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=89.51 E-value=0.11 Score=57.71 Aligned_cols=96 Identities=13% Similarity=0.038 Sum_probs=84.2
Q ss_pred cccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchh
Q 007653 112 ELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYK 191 (594)
Q Consensus 112 ~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~ 191 (594)
.+..+|+..+|+.||..++.+.+.... -...+.+|.++.+.|...+|--.+..|+.-.|....-+|.++.+|.
T Consensus 222 YWR~~G~~~~A~~Ca~~a~hf~~~h~k-------di~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~a 294 (886)
T KOG4507|consen 222 YWRIKGEPYQAVECAMRALHFSSRHNK-------DIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYA 294 (886)
T ss_pred HHHHcCChhhhhHHHHHHhhhCCcccc-------cchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHH
Confidence 345678899999999999998887643 4467889999999999999999999999888877778999999999
Q ss_pred hhhhHHHHhhhcccccccCCCCC
Q 007653 192 DIGRLEEAVSDLSNAHEVSPDDG 214 (594)
Q Consensus 192 ~lg~~~eAi~~lekAl~l~P~~~ 214 (594)
.++.|...+.+|..+.+.+|...
T Consensus 295 ml~~~N~S~~~ydha~k~~p~f~ 317 (886)
T KOG4507|consen 295 MLGEYNHSVLCYDHALQARPGFE 317 (886)
T ss_pred HHhhhhhhhhhhhhhhccCcchh
Confidence 99999999999999999999753
No 250
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=89.24 E-value=0.34 Score=58.83 Aligned_cols=118 Identities=13% Similarity=0.008 Sum_probs=102.9
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc--
Q 007653 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK-- 178 (594)
Q Consensus 101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~-- 178 (594)
+....|..+.-+|-+.++|++|.++|+.-++..... ...|...+..+++..+-++|...+.+||+--|.
T Consensus 1528 d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~---------~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1528 DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT---------RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch---------hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 334566777778999999999999999999877644 348999999999999999999999999999998
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (594)
Q Consensus 179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l 227 (594)
|.+...--+..-+..|+-+.+...|+..+.-+|...++|..+-....+.
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~ 1647 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKH 1647 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHcc
Confidence 8888888899999999999999999999999999999999887765553
No 251
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=89.13 E-value=0.13 Score=51.35 Aligned_cols=60 Identities=20% Similarity=0.099 Sum_probs=54.9
Q ss_pred cccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch
Q 007653 112 ELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180 (594)
Q Consensus 112 ~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ 180 (594)
.+.+.++++.|.+.|.+++++.|.. ...|..++....+.|+++.|.+.|++.|++||.+-
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w---------~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEW---------AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchh---------hhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 4678899999999999999999998 45899999999999999999999999999999763
No 252
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.40 E-value=0.86 Score=49.97 Aligned_cols=102 Identities=15% Similarity=0.100 Sum_probs=83.3
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~ 178 (594)
...-++.+...+....++.+...|-..+-.||-.+|.+.. +...-..-+++++++.|...|++-|+..|.
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl----------Fk~YIelElqL~efDRcRkLYEkfle~~Pe 469 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL----------FKGYIELELQLREFDRCRKLYEKFLEFSPE 469 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH----------HHHHHHHHHHHhhHHHHHHHHHHHHhcChH
Confidence 3445677777888888889999999999999998888742 222223346788999999999999999999
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccC
Q 007653 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 210 (594)
Q Consensus 179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~ 210 (594)
+..+|...|..-..+|+.+.|...|+-|+...
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999888653
No 253
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=87.92 E-value=0.12 Score=52.57 Aligned_cols=70 Identities=17% Similarity=0.114 Sum_probs=61.3
Q ss_pred ecccCceeeeccccchhhhhhcceeeeeccc---chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHH
Q 007653 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAK---NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA 217 (594)
Q Consensus 148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~---~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~ 217 (594)
.+++-|...++-|+|.+|+..|+.+....|. ..++...++.++++.++|++|+..+++-+.+.|.++.+.
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence 4566666678899999999999999988775 467999999999999999999999999999999987654
No 254
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=87.61 E-value=0.16 Score=55.79 Aligned_cols=94 Identities=18% Similarity=0.130 Sum_probs=78.8
Q ss_pred hhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhh-HHH
Q 007653 120 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR-LEE 198 (594)
Q Consensus 120 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~-~~e 198 (594)
..-+..|++|+...+.+. .+|.+......+-+.|.+....|.++|.++|+++..|..-+.-.+..+. .+.
T Consensus 88 ~rIv~lyr~at~rf~~D~---------~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~s 158 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDV---------KLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIES 158 (568)
T ss_pred HHHHHHHHHHHHhcCCCH---------HHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHH
Confidence 445667999999888774 3677766555566669999999999999999999999999999988877 899
Q ss_pred HhhhcccccccCCCCChHHHHHhH
Q 007653 199 AVSDLSNAHEVSPDDGTIADVLRD 222 (594)
Q Consensus 199 Ai~~lekAl~l~P~~~~a~~~l~~ 222 (594)
|...+.++|..+|+.+.+|..+=.
T Consensus 159 aRalflrgLR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 159 ARALFLRGLRFNPDSPKLWKEYFR 182 (568)
T ss_pred HHHHHHHHhhcCCCChHHHHHHHH
Confidence 999999999999999998875543
No 255
>PRK10941 hypothetical protein; Provisional
Probab=87.45 E-value=0.14 Score=52.83 Aligned_cols=76 Identities=12% Similarity=-0.081 Sum_probs=65.9
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka 182 (594)
...+.++-..+.+.++|..|+.+.+..+.+.|.++. -+.-||.+|.+++.+..|+.+++.-|+..|+.+.+
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~---------e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPY---------EIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 355667777899999999999999999999999963 46679999999999999999999999999999887
Q ss_pred HHHhc
Q 007653 183 LYRRG 187 (594)
Q Consensus 183 ~~~rg 187 (594)
..-+-
T Consensus 252 ~~ik~ 256 (269)
T PRK10941 252 EMIRA 256 (269)
T ss_pred HHHHH
Confidence 55443
No 256
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.26 E-value=0.2 Score=35.22 Aligned_cols=30 Identities=40% Similarity=0.516 Sum_probs=24.2
Q ss_pred hHHHHHhccchhhhhhHHHHhhhccccccc
Q 007653 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEV 209 (594)
Q Consensus 180 ~ka~~~rg~al~~lg~~~eAi~~lekAl~l 209 (594)
+.++.++|.+|...|+|++|+.++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357788999999999999999999888764
No 257
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.18 E-value=0.16 Score=49.16 Aligned_cols=104 Identities=13% Similarity=0.060 Sum_probs=77.2
Q ss_pred chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecc--
Q 007653 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA-- 177 (594)
Q Consensus 100 ~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP-- 177 (594)
...-..+..+|..|++.|++++|++.|.++.+..-... ..+..++++-.+.+..++|..+..+..++-.+--
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~------~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~ 106 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPG------HKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG 106 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence 34557899999999999999999999999888654332 1244667777777888999999888888755422
Q ss_pred cc----hHHHHHhccchhhhhhHHHHhhhccccccc
Q 007653 178 KN----VKALYRRGQAYKDIGRLEEAVSDLSNAHEV 209 (594)
Q Consensus 178 ~~----~ka~~~rg~al~~lg~~~eAi~~lekAl~l 209 (594)
.+ .+.....|.++...++|.+|...|-.++.-
T Consensus 107 ~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 107 GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 22 223445677888889999999988776543
No 258
>PLN03077 Protein ECB2; Provisional
Probab=87.12 E-value=0.28 Score=58.68 Aligned_cols=99 Identities=11% Similarity=0.055 Sum_probs=67.4
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhc--cccccccccceeeeeecccCceeeeccccchhhhhhcceeeee---c
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKN--LQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY---D 176 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l--~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l---d 176 (594)
....|..+...|.+.|++++|+..|++.++. .|+. ..|..+-.+|.+.|++++|.+.++...+. .
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~----------~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~ 622 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE----------VTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc----------ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC
Confidence 4556788888888889999999998887653 3333 23455555666777788888877776532 3
Q ss_pred ccchHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007653 177 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212 (594)
Q Consensus 177 P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~ 212 (594)
| +...|..+..+|.+.|++++|.+.+++. .+.|+
T Consensus 623 P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd 656 (857)
T PLN03077 623 P-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD 656 (857)
T ss_pred C-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence 3 3456677777777778888887777764 24454
No 259
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=87.03 E-value=0.22 Score=44.23 Aligned_cols=96 Identities=11% Similarity=0.103 Sum_probs=72.7
Q ss_pred hcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecc-----------ccchhhhhhcceeeeecc
Q 007653 109 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-----------KQYDECIKVGSEVLAYDA 177 (594)
Q Consensus 109 ~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl-----------g~y~eAi~~~~~AL~ldP 177 (594)
++..++.+|++-+|++..++.+...++.... ...+.-.|.+++++ .-...++++|.++..+.|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~------~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESS------WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCch------HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccCh
Confidence 3456889999999999999999877666421 01222334444332 235678899999999999
Q ss_pred cchHHHHHhccchhhhhhHHHHhhhcccccccC
Q 007653 178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 210 (594)
Q Consensus 178 ~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~ 210 (594)
..+..+|.+|.=+-....|++++.-++++|.+.
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 999999999999888889999999999988764
No 260
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.66 E-value=0.41 Score=33.60 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=27.1
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhcccc
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG 135 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~ 135 (594)
+..+.++|..+...|+|++|+.+|.+++.+...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 457889999999999999999999999986443
No 261
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.66 E-value=0.3 Score=49.82 Aligned_cols=70 Identities=11% Similarity=0.102 Sum_probs=62.2
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ 180 (594)
..-.+++.+.++...++|.+|...|.+.+..++.++ .+-+|.|.|++-+|+..+|++..+.++.++|...
T Consensus 251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~---------~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNA---------VANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hHHHHhhhhhheecccchHHHHHHHhhccccCCCch---------hhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 345677888899999999999999999999999985 4778999999999999999999999999999753
No 262
>PLN03218 maturation of RBCL 1; Provisional
Probab=86.32 E-value=0.21 Score=60.92 Aligned_cols=61 Identities=13% Similarity=0.066 Sum_probs=33.5
Q ss_pred ecccCceeeeccccchhhhhhcceeeeec-ccchHHHHHhccchhhhhhHHHHhhhcccccc
Q 007653 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYD-AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE 208 (594)
Q Consensus 148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ld-P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~ 208 (594)
.|..+-.+|.+.|++++|++.|++..+.+ +.+...|..+..+|.+.|++++|+..|++..+
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34445555555566666666655555444 23445555555556666666666666655443
No 263
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=86.09 E-value=0.051 Score=57.35 Aligned_cols=107 Identities=12% Similarity=0.067 Sum_probs=85.9
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhcccccc-ccccceeeeeecccCceeeeccccchhhhhhcceeeeec------
Q 007653 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIH-SSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD------ 176 (594)
Q Consensus 104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~-~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ld------ 176 (594)
+.+..+|..+-+.++|++|+.+..+|.++..... .......+....+..+.+|+.+|+.-.|.++|+++-++.
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 4566778888899999999999999998876654 222333445566788889999999999999999997764
Q ss_pred ccchHHHHHhccchhhhhhHHHHhhhcccccccC
Q 007653 177 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 210 (594)
Q Consensus 177 P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~ 210 (594)
+.++....-.|.+|...|+.+.|..-|+.|..+-
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 4566777778999999999999999999887653
No 264
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=85.62 E-value=0.3 Score=50.61 Aligned_cols=128 Identities=13% Similarity=0.038 Sum_probs=85.9
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccc-cccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYS-EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (594)
Q Consensus 85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~-~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~ 163 (594)
++++..-+........-....|...+..-++ .++.+.|...|+.+++..|.+.. +|+.....+.++++.+
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~---------~~~~Y~~~l~~~~d~~ 87 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD---------FWLEYLDFLIKLNDIN 87 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH---------HHHHHHHHHHHTT-HH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHhCcHH
Confidence 4444444444444444445566677766445 67777799999999999998854 5666667788899999
Q ss_pred hhhhhcceeeeecccch--H-HHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHh
Q 007653 164 ECIKVGSEVLAYDAKNV--K-ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 221 (594)
Q Consensus 164 eAi~~~~~AL~ldP~~~--k-a~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~ 221 (594)
.|...|++++..-|... + .|-....--...|+++...+.++++.++-|++..+.....
T Consensus 88 ~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 88 NARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSD 148 (280)
T ss_dssp HHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHC
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999998766554 3 3444444446778888888888888888888665544333
No 265
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=85.41 E-value=0.38 Score=52.56 Aligned_cols=115 Identities=14% Similarity=0.037 Sum_probs=93.6
Q ss_pred HhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhc
Q 007653 90 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 169 (594)
Q Consensus 90 ~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~ 169 (594)
+++..+++.+.-....+...|.--..++++..|-..|++||..+-.+ +++|+..+.|-++-+....|...+
T Consensus 60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~---------itLWlkYae~Emknk~vNhARNv~ 130 (677)
T KOG1915|consen 60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRN---------ITLWLKYAEFEMKNKQVNHARNVW 130 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccc---------chHHHHHHHHHHhhhhHhHHHHHH
Confidence 44444555555556677777777788899999999999999987666 668999999999999999999999
Q ss_pred ceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007653 170 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213 (594)
Q Consensus 170 ~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~ 213 (594)
++|+.+-|.--+.||..-..--.+|+..-|...|++=+...|+.
T Consensus 131 dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e 174 (677)
T KOG1915|consen 131 DRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE 174 (677)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH
Confidence 99999999988888887777777888888888888888887763
No 266
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=83.55 E-value=0.34 Score=44.55 Aligned_cols=73 Identities=23% Similarity=0.194 Sum_probs=57.0
Q ss_pred ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchHHHHHHhhc
Q 007653 177 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVG 249 (594)
Q Consensus 177 P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~iee~~e~~~ 249 (594)
.....++..++.++...|++++|+..+++++.++|-+..++..+-.+....++...+...+........++-.
T Consensus 59 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg 131 (146)
T PF03704_consen 59 ELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELG 131 (146)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhC
Confidence 3456677888899999999999999999999999999999999999999988877766666665555554443
No 267
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.99 E-value=0.55 Score=49.43 Aligned_cols=108 Identities=10% Similarity=-0.023 Sum_probs=81.3
Q ss_pred hhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhc-cccccccccceeeeeecccCceeeeccccchhhhhhcce
Q 007653 93 DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKN-LQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE 171 (594)
Q Consensus 93 ~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l-~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~ 171 (594)
++-++..|...-+++---..+|-.|+...-...+++.|-. +++.|- ..++.--++.|+...|-|++|.+..++
T Consensus 127 dklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~------~sYv~GmyaFgL~E~g~y~dAEk~A~r 200 (491)
T KOG2610|consen 127 DKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPC------YSYVHGMYAFGLEECGIYDDAEKQADR 200 (491)
T ss_pred HHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcH------HHHHHHHHHhhHHHhccchhHHHHHHh
Confidence 3344445555556666666777778777777778887755 444431 122223468899999999999999999
Q ss_pred eeeecccchHHHHHhccchhhhhhHHHHhhhcccc
Q 007653 172 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA 206 (594)
Q Consensus 172 AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekA 206 (594)
++.||+.+.-+.+..+-++...+++.++++...+-
T Consensus 201 alqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 201 ALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 99999999999999999999999999999887654
No 268
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.67 E-value=0.33 Score=48.70 Aligned_cols=121 Identities=13% Similarity=0.140 Sum_probs=77.1
Q ss_pred hhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec-cccchhhhhhcc
Q 007653 92 IDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK-TKQYDECIKVGS 170 (594)
Q Consensus 92 ~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k-lg~y~eAi~~~~ 170 (594)
+|.......+.+..+..-++ .|+..+..+|+.++.++|++..+.... ..-+..+.-+|..|-. +.+++.||.+|+
T Consensus 63 ~h~k~~skhDaat~YveA~~-cykk~~~~eAv~cL~~aieIyt~~Grf---~~aAk~~~~iaEiyEsdl~d~ekaI~~YE 138 (288)
T KOG1586|consen 63 LHLKAGSKHDAATTYVEAAN-CYKKVDPEEAVNCLEKAIEIYTDMGRF---TMAAKHHIEIAEIYESDLQDFEKAIAHYE 138 (288)
T ss_pred HHHhcCCchhHHHHHHHHHH-HhhccChHHHHHHHHHHHHHHHhhhHH---HHHHhhhhhHHHHHhhhHHHHHHHHHHHH
Confidence 34333444555555555555 456669999999999999987654320 0001123345555543 378899999998
Q ss_pred eeeeec------ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChH
Q 007653 171 EVLAYD------AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 216 (594)
Q Consensus 171 ~AL~ld------P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a 216 (594)
.+-+.- ..--+++...+..-..+++|.+|+..|++.....-+|..+
T Consensus 139 ~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 139 QAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred HHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 876442 1223445555555678999999999999988776666543
No 269
>smart00727 STI1 Heat shock chaperonin-binding motif.
Probab=82.60 E-value=2 Score=30.92 Aligned_cols=31 Identities=26% Similarity=0.645 Sum_probs=26.9
Q ss_pred HHHHhcCcHHHHHHHHHHhhcCCHHHHhhhhhh
Q 007653 483 QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQ 515 (594)
Q Consensus 483 ~m~~~m~~p~m~~m~~~mmk~m~p~~~~~m~~~ 515 (594)
.+..+|+||.+++++..|+.| |+.+..|.++
T Consensus 3 ~~~~~l~~P~~~~~l~~~~~n--P~~~~~~~~~ 33 (41)
T smart00727 3 EMALRLQNPQVQSLLQDMQQN--PDMLAQMLQE 33 (41)
T ss_pred HHHHHHcCHHHHHHHHHHHHC--HHHHHHHHHh
Confidence 577888999999999999999 9988887764
No 270
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.89 E-value=0.94 Score=45.84 Aligned_cols=109 Identities=12% Similarity=0.047 Sum_probs=79.1
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee---
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--- 175 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l--- 175 (594)
.++.+..-..++-......+.++|+.+|++++.+...... ...-...|...+.+|.++.+|.+|...+.+-..+
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr---~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~ 182 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDR---DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADK 182 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccch---HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHH
Confidence 4555566666777788888999999999999998765532 1111235677888999999999998776664332
Q ss_pred -c--ccchHHHHHhccchhhhhhHHHHhhhcccccccC
Q 007653 176 -D--AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 210 (594)
Q Consensus 176 -d--P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~ 210 (594)
+ ++..+++.-.-.+|+...+|..|...|+....+.
T Consensus 183 ~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 183 CDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred HhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 2 4445566666677777889999999999987764
No 271
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.33 E-value=0.87 Score=29.41 Aligned_cols=26 Identities=23% Similarity=0.119 Sum_probs=21.6
Q ss_pred hHHHHHhccchhhhhhHHHHhhhccc
Q 007653 180 VKALYRRGQAYKDIGRLEEAVSDLSN 205 (594)
Q Consensus 180 ~ka~~~rg~al~~lg~~~eAi~~lek 205 (594)
+.+++.+|.+|...|++++|...+++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 35788899999999999999988763
No 272
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=81.23 E-value=1.5 Score=49.34 Aligned_cols=110 Identities=15% Similarity=-0.019 Sum_probs=87.9
Q ss_pred hcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhh-cceeeeecccchHHHHHh-
Q 007653 109 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKV-GSEVLAYDAKNVKALYRR- 186 (594)
Q Consensus 109 ~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~-~~~AL~ldP~~~ka~~~r- 186 (594)
+...+...++...++.....++..+|.+ +.++.|++.+....|....++.. +..+..+.|++..+...+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 143 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPEN---------CPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLI 143 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCccc---------chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHH
Confidence 4666677788888899999999999888 55899999888777766665555 455889999998887777
Q ss_pred -----ccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653 187 -----GQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (594)
Q Consensus 187 -----g~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l 227 (594)
+..+..+|+..++..+++++..+.|+++.+...+-.+.+..
T Consensus 144 ~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~ 189 (620)
T COG3914 144 RFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQ 189 (620)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHh
Confidence 88888999999999999999999999977666555553333
No 273
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=80.84 E-value=2.9 Score=35.46 Aligned_cols=43 Identities=14% Similarity=0.425 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhcCCHHHHhhhhhhhccccchhhHHHHHHhhhc
Q 007653 492 AMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSS 534 (594)
Q Consensus 492 ~m~~m~~~mmk~m~p~~~~~m~~~~g~~~~~~~a~~~~~~~~~ 534 (594)
=++++...=++++|++.+-.-|+|+|+.++++||++-.+-|+.
T Consensus 3 i~qqiVn~Kln~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~ 45 (85)
T PF11116_consen 3 IIQQIVNQKLNNITAKELLKYSKQYNISITKKQAEQIANILRG 45 (85)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Confidence 3567777778999999999999999999999999999998874
No 274
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=79.87 E-value=0.92 Score=46.59 Aligned_cols=78 Identities=14% Similarity=-0.029 Sum_probs=65.8
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchH
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 181 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k 181 (594)
....+.++-..+...+++..|..+-.+.+.++|.++. -+.-+|.+|.++|.|..|+++++..++..|+.+.
T Consensus 180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~---------eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPY---------EIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChh---------hccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 3455666666788999999999999999999999963 4678999999999999999999999999999887
Q ss_pred HHHHhcc
Q 007653 182 ALYRRGQ 188 (594)
Q Consensus 182 a~~~rg~ 188 (594)
+-.-+..
T Consensus 251 a~~ir~~ 257 (269)
T COG2912 251 AEMIRAQ 257 (269)
T ss_pred HHHHHHH
Confidence 6555443
No 275
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=79.39 E-value=0.58 Score=33.50 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=25.8
Q ss_pred HHHHHhccchhhhhhHHHHhhhccccccc
Q 007653 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEV 209 (594)
Q Consensus 181 ka~~~rg~al~~lg~~~eAi~~lekAl~l 209 (594)
+.|..+|.+-...++|++|+.+|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 56788899999999999999999999875
No 276
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=79.31 E-value=0.54 Score=56.40 Aligned_cols=114 Identities=13% Similarity=0.157 Sum_probs=84.0
Q ss_pred hcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecc-------ccchhhhhhcceeeeecccchH
Q 007653 109 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-------KQYDECIKVGSEVLAYDAKNVK 181 (594)
Q Consensus 109 ~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl-------g~y~eAi~~~~~AL~ldP~~~k 181 (594)
..+.++..+.|+.|+..|++.-...|.-.+ + .-+....|.+++.. ..|.+|+..|++.. --|.-+-
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 553 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKE--G----YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPL 553 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCccc--c----hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCch
Confidence 334567888999999999999888776542 1 12344555555432 35677777776643 2466777
Q ss_pred HHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 182 a~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
-|.-.+.+|.++|+|+|-+++|.-|++.-|+++.+-.....+..++-+
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (932)
T PRK13184 554 EYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHE 601 (932)
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 888899999999999999999999999999999887777666666543
No 277
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=77.78 E-value=0.16 Score=43.69 Aligned_cols=66 Identities=21% Similarity=0.230 Sum_probs=44.1
Q ss_pred ccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhh
Q 007653 113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD 192 (594)
Q Consensus 113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~ 192 (594)
..+.++|.+|++.+.+.+++....... .. .-....++.+++.++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~-------------~~---------------------~~~~~~all~lA~~~~~ 53 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNS-------------SS---------------------NSGLAYALLNLAELHRR 53 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccc-------------hh---------------------hHHHHHHHHHHHHHHHH
Confidence 467899999999999988764443210 00 12234456677777777
Q ss_pred hhhHHHHhhhcccccccCCC
Q 007653 193 IGRLEEAVSDLSNAHEVSPD 212 (594)
Q Consensus 193 lg~~~eAi~~lekAl~l~P~ 212 (594)
.|++++|+..+++|+.+...
T Consensus 54 ~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 54 FGHYEEALQALEEAIRLARE 73 (94)
T ss_pred hCCHHHHHHHHHHHHHHHHH
Confidence 77777777777777776543
No 278
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=77.63 E-value=0.91 Score=47.66 Aligned_cols=127 Identities=16% Similarity=0.069 Sum_probs=93.4
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee---
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--- 175 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l--- 175 (594)
....+..+...+..+.+.|+|..|...+.++..+.+.... ....+.+-.+..+...|+..+|+..+...+..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~-----~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES-----LLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC-----CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 4566778899999999999999999999998876533211 01223444566666777777777766555540
Q ss_pred -------------------------------cccchHHHHHhccchhhh------hhHHHHhhhcccccccCCCCChHHH
Q 007653 176 -------------------------------DAKNVKALYRRGQAYKDI------GRLEEAVSDLSNAHEVSPDDGTIAD 218 (594)
Q Consensus 176 -------------------------------dP~~~ka~~~rg~al~~l------g~~~eAi~~lekAl~l~P~~~~a~~ 218 (594)
....+++++.+|.-...+ +.+++++..|++++.++|...+++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~ 296 (352)
T PF02259_consen 217 KNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWH 296 (352)
T ss_pred hccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHH
Confidence 012356777788877777 8899999999999999999999999
Q ss_pred HHhHHHHHhhhc
Q 007653 219 VLRDAKEILMKE 230 (594)
Q Consensus 219 ~l~~a~~~l~~~ 230 (594)
.++.....+-..
T Consensus 297 ~~a~~~~~~~~~ 308 (352)
T PF02259_consen 297 SWALFNDKLLES 308 (352)
T ss_pred HHHHHHHHHHHh
Confidence 888887777543
No 279
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=76.34 E-value=3.6 Score=32.92 Aligned_cols=36 Identities=22% Similarity=0.393 Sum_probs=29.0
Q ss_pred HHhhc--CCHHHHhhhhhhhccccchhhHHHHHHhhhc
Q 007653 499 SMVKN--MSPEMMANMSEQFGIKLSREDTEKFQQTMSS 534 (594)
Q Consensus 499 ~mmk~--m~p~~~~~m~~~~g~~~~~~~a~~~~~~~~~ 534 (594)
.+.+| ++++|+..|..|+|.|.|..+-.+..++|++
T Consensus 25 ~l~~NPpine~mir~M~~QMG~kpSekqi~Q~m~~mk~ 62 (64)
T PF03672_consen 25 QLKENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMKN 62 (64)
T ss_pred HHHHCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHh
Confidence 44455 6679999999999999999988877777654
No 280
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=74.83 E-value=1.1 Score=49.87 Aligned_cols=88 Identities=9% Similarity=-0.098 Sum_probs=72.0
Q ss_pred cccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc----chHHHHHhccchh
Q 007653 116 EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK----NVKALYRRGQAYK 191 (594)
Q Consensus 116 ~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~----~~ka~~~rg~al~ 191 (594)
......|.....+.....|+.. ...+..|.++...|+.++|++.+++++..... ..-.+|.++.+|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~---------lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~ 316 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSA---------LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM 316 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcH---------HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH
Confidence 4455678888888888888763 36688899999999999999999999864433 3347899999999
Q ss_pred hhhhHHHHhhhcccccccCCC
Q 007653 192 DIGRLEEAVSDLSNAHEVSPD 212 (594)
Q Consensus 192 ~lg~~~eAi~~lekAl~l~P~ 212 (594)
-+.+|++|..++.+.++.+.-
T Consensus 317 ~~~~w~~A~~~f~~L~~~s~W 337 (468)
T PF10300_consen 317 FQHDWEEAAEYFLRLLKESKW 337 (468)
T ss_pred HHchHHHHHHHHHHHHhcccc
Confidence 999999999999999886543
No 281
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=74.49 E-value=0.39 Score=50.42 Aligned_cols=111 Identities=17% Similarity=0.111 Sum_probs=74.7
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhh-cccccc------------------------ccccceeeeeecccCceee
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKK-NLQGIH------------------------SSEGRTLLLACSLNSMSCY 156 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~-l~p~~~------------------------~~e~~~l~~~~~~N~a~~~ 156 (594)
.+......+..+...|+..+|+..+...+. ...... ..+.......+++-+|...
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 455666677778888899999999888887 221110 0111222333444445444
Q ss_pred ecc------ccchhhhhhcceeeeecccchHHHHHhccchhhhhhHH-----------------HHhhhcccccccCCC
Q 007653 157 LKT------KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLE-----------------EAVSDLSNAHEVSPD 212 (594)
Q Consensus 157 ~kl------g~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~-----------------eAi~~lekAl~l~P~ 212 (594)
... +.+++++..|.++++++|.+.++|+..|..+..+-+.+ .|+..|-+++.+.++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 445 78888999999999999999999999988887653322 366666666666655
No 282
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=73.28 E-value=1.8 Score=48.16 Aligned_cols=76 Identities=18% Similarity=0.052 Sum_probs=66.4
Q ss_pred cccchhhhhhcceeeeecccchHHHHHhccchhhh---hhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCC
Q 007653 159 TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI---GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHH 234 (594)
Q Consensus 159 lg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~l---g~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~ 234 (594)
......+|.+|.+++..-|.....|.+|+.+|.+. |+.-.|+.++..|++++|-..+++..+.++...+.++..+.
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal 465 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEAL 465 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhh
Confidence 45677889999999999999999999999999865 45667999999999999999999999999999998877543
No 283
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=73.08 E-value=1.6 Score=47.81 Aligned_cols=72 Identities=18% Similarity=0.208 Sum_probs=59.0
Q ss_pred ceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCC----CChHHHHHhHHHHHhh
Q 007653 153 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD----DGTIADVLRDAKEILM 228 (594)
Q Consensus 153 a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~----~~~a~~~l~~a~~~l~ 228 (594)
|..++..|+|.+|.-++.=..+++| ++.+|..+|.|++..++|++|..++...- |+ +..+++.+..|++.+.
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP---~n~~~~dskvqKAl~lCqKh~~ 544 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP---PNERMRDSKVQKALALCQKHLP 544 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC---CchhhHHHHHHHHHHHHHHhhh
Confidence 4456778999999999999999999 99999999999999999999999987543 32 3556677777766654
No 284
>PRK00523 hypothetical protein; Provisional
Probab=72.00 E-value=8.1 Score=31.65 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=26.1
Q ss_pred CCHHHHhhhhhhhccccchhhHHHHHHhhh
Q 007653 504 MSPEMMANMSEQFGIKLSREDTEKFQQTMS 533 (594)
Q Consensus 504 m~p~~~~~m~~~~g~~~~~~~a~~~~~~~~ 533 (594)
.+++|+..|..|+|.|.|..+-.+.-++|+
T Consensus 40 ine~mir~M~~QMGqKPSekki~Q~m~~mk 69 (72)
T PRK00523 40 ITENMIRAMYMQMGRKPSESQIKQVMRSVK 69 (72)
T ss_pred CCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 789999999999999999988777776664
No 285
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=71.09 E-value=2.7 Score=39.94 Aligned_cols=75 Identities=13% Similarity=-0.010 Sum_probs=65.5
Q ss_pred eeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 155 ~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
+-.+.++.+++...+...--+.|.++.....-|..+...|+|.+|+..|+....-.|..+-+...+..|...+++
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 334556888888888888888999999999999999999999999999999999999999888899998877754
No 286
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=69.94 E-value=2 Score=43.67 Aligned_cols=62 Identities=11% Similarity=-0.083 Sum_probs=52.8
Q ss_pred hhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007653 165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (594)
Q Consensus 165 Ai~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~ 226 (594)
|+.+|.+|+.+.|++...|+.+|..+...|++-+|+=+|-+++...--.+.+..+|...-++
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999998766678888888887666
No 287
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.39 E-value=1.8 Score=49.37 Aligned_cols=105 Identities=20% Similarity=0.120 Sum_probs=78.5
Q ss_pred HHHhccccccc----c-cchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc---cchhhhhhcceeeeecc
Q 007653 106 LKKQGNELYSE----G-RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK---QYDECIKVGSEVLAYDA 177 (594)
Q Consensus 106 l~~~Gn~~~~~----g-~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg---~y~eAi~~~~~AL~ldP 177 (594)
...+|..|++. . ++..|+.+|.++-++...+ +.+++|.||.... ++..|.++|..|. .-
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~-----------a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa--~~ 357 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPD-----------AQYLLGVLYETGTKERDYRRAFEYYSLAA--KA 357 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCch-----------HHHHHHHHHHcCCccccHHHHHHHHHHHH--Hc
Confidence 44555555552 2 7889999999999876655 5688888887765 6789999999887 45
Q ss_pred cchHHHHHhccchhh----hhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007653 178 KNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 225 (594)
Q Consensus 178 ~~~ka~~~rg~al~~----lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~ 225 (594)
.+..++|+++.||.. .-+.+.|+.+|.++.+.. ++.+...++...+
T Consensus 358 G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~ 407 (552)
T KOG1550|consen 358 GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYE 407 (552)
T ss_pred CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHH
Confidence 789999999999963 246889999999999886 4444555554433
No 288
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=68.56 E-value=5.5 Score=40.21 Aligned_cols=105 Identities=13% Similarity=0.100 Sum_probs=62.7
Q ss_pred ccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeee-------------cccc-ch----hhhhhcceeee
Q 007653 113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL-------------KTKQ-YD----ECIKVGSEVLA 174 (594)
Q Consensus 113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~-------------klg~-y~----eAi~~~~~AL~ 174 (594)
+|..|+|+.|++...-||+..-..|+. +++-...+ ..|+ ++ ..+.....-..
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~----------f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~d 162 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQ----------FRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWD 162 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCcc----------ccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCC
Confidence 478999999999999999987666541 22211111 1111 00 00111111011
Q ss_pred e-cccchHHHHHhccch---------hhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653 175 Y-DAKNVKALYRRGQAY---------KDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (594)
Q Consensus 175 l-dP~~~ka~~~rg~al---------~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~ 228 (594)
+ +.-.++.|--.|.++ ...++...|+.+|++|+.++|+ .-+...+..+..+|+
T Consensus 163 mpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr 225 (230)
T PHA02537 163 MPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLK 225 (230)
T ss_pred CChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHh
Confidence 1 122355666667777 3567889999999999999975 445666777766665
No 289
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=68.55 E-value=1.5 Score=45.36 Aligned_cols=112 Identities=17% Similarity=0.102 Sum_probs=81.0
Q ss_pred cchHHHHHHHhcccccccc-cchhHHHHHHHhhhcccc----cc-ccccceeeeeecccCceeeeccccchhhhhhccee
Q 007653 99 EFNAAKMLKKQGNELYSEG-RFSNALQKYLLAKKNLQG----IH-SSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEV 172 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g-~y~eAi~~Y~kAL~l~p~----~~-~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~A 172 (594)
....+..+++.|..++..+ +|.+|+..+++++++... .. ..+..+++..++..++.+|+..+.++...+ |.++
T Consensus 31 ~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~ 109 (278)
T PF08631_consen 31 AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALNA 109 (278)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHH
Confidence 3455778999999999999 999999999999998533 11 234556778888899999999887754433 3333
Q ss_pred e----eecccchHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007653 173 L----AYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 211 (594)
Q Consensus 173 L----~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P 211 (594)
+ .--|+.+..++..=.++...++.+++.+.+.+.+.--+
T Consensus 110 l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 110 LRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 3 33477777775555555557788888888888776543
No 290
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=68.21 E-value=1.1 Score=38.48 Aligned_cols=19 Identities=21% Similarity=0.492 Sum_probs=11.5
Q ss_pred eccccchhhhhhcceeeee
Q 007653 157 LKTKQYDECIKVGSEVLAY 175 (594)
Q Consensus 157 ~klg~y~eAi~~~~~AL~l 175 (594)
.+.++|.+|++.+.+.+..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~ 27 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDY 27 (94)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 3456777776666665543
No 291
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=66.93 E-value=0.76 Score=47.91 Aligned_cols=88 Identities=13% Similarity=0.030 Sum_probs=70.6
Q ss_pred HHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHH-hccchhhhhhHHHHhhhcc
Q 007653 126 YLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR-RGQAYKDIGRLEEAVSDLS 204 (594)
Q Consensus 126 Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~-rg~al~~lg~~~eAi~~le 204 (594)
|.++....+.++. .|.-.+....+.+-|.+--..|.+++..+|.|++.|.. .+.-|...++++.+...+.
T Consensus 96 ~~R~tnkff~D~k---------~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~ 166 (435)
T COG5191 96 LYRSTNKFFNDPK---------IWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFL 166 (435)
T ss_pred eehhhhcCCCCcH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHH
Confidence 5555555666643 56666666667788999999999999999999999877 5556678899999999999
Q ss_pred cccccCCCCChHHHHHhH
Q 007653 205 NAHEVSPDDGTIADVLRD 222 (594)
Q Consensus 205 kAl~l~P~~~~a~~~l~~ 222 (594)
+++.++|+++.+|..+-.
T Consensus 167 ~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 167 KGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred hhhccCCCCchHHHHHHH
Confidence 999999999998875544
No 292
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=66.80 E-value=2.3 Score=40.41 Aligned_cols=86 Identities=9% Similarity=-0.101 Sum_probs=68.3
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchH
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 181 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k 181 (594)
....+........+.++..++...+...-.+.|..+. +-.--+..|...|+|.+|+..++.+..-.|..+-
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e---------~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~ 79 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPE---------LDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY 79 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchH---------HHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH
Confidence 3456777777778888889988888887778888864 4456677888899999999999998888888887
Q ss_pred HHHHhccchhhhhhH
Q 007653 182 ALYRRGQAYKDIGRL 196 (594)
Q Consensus 182 a~~~rg~al~~lg~~ 196 (594)
+---++.||+.+++.
T Consensus 80 ~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 80 AKALLALCLYALGDP 94 (160)
T ss_pred HHHHHHHHHHHcCCh
Confidence 777778888877764
No 293
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=66.51 E-value=2.7 Score=29.69 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=24.9
Q ss_pred HHHHHhccchhhhhhHHHHhhh--cccccccCCCC
Q 007653 181 KALYRRGQAYKDIGRLEEAVSD--LSNAHEVSPDD 213 (594)
Q Consensus 181 ka~~~rg~al~~lg~~~eAi~~--lekAl~l~P~~ 213 (594)
+.++.+|..+...|+|++|+.. |+-+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 5678889999999999999999 54777777654
No 294
>PRK01844 hypothetical protein; Provisional
Probab=66.12 E-value=12 Score=30.57 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=28.1
Q ss_pred HHhhc--CCHHHHhhhhhhhccccchhhHHHHHHhhh
Q 007653 499 SMVKN--MSPEMMANMSEQFGIKLSREDTEKFQQTMS 533 (594)
Q Consensus 499 ~mmk~--m~p~~~~~m~~~~g~~~~~~~a~~~~~~~~ 533 (594)
.+-+| .+++|+..|..|+|.|.|..+-.+.-++|+
T Consensus 32 ~lk~NPpine~mir~Mm~QMGqkPSekki~Q~m~~mk 68 (72)
T PRK01844 32 YLQKNPPINEQMLKMMMMQMGQKPSQKKINQMMSAMN 68 (72)
T ss_pred HHHHCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 34444 789999999999999999988777666664
No 295
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=65.56 E-value=1.8 Score=44.36 Aligned_cols=110 Identities=8% Similarity=-0.063 Sum_probs=83.5
Q ss_pred ccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc-cchhhhhhcceeeeecccchHHHHHhccchh
Q 007653 113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-QYDECIKVGSEVLAYDAKNVKALYRRGQAYK 191 (594)
Q Consensus 113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg-~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~ 191 (594)
+.+..+-..|+.+-..+|.++|.+ ..+|.-|-.|+..++ +..+-++++++.++-+|+|...|+.|-.+..
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAn---------YTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive 123 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPAN---------YTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVE 123 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCccc---------chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHH
Confidence 445556677888888888888887 456777777776665 5666777888888888999988888888888
Q ss_pred hhhhHH-HHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653 192 DIGRLE-EAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 231 (594)
Q Consensus 192 ~lg~~~-eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~ 231 (594)
.+|++. .-++.++..+..|.+|-.+|....-+....+.++
T Consensus 124 ~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~ 164 (318)
T KOG0530|consen 124 LLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYE 164 (318)
T ss_pred HhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHH
Confidence 888877 7788888888888888777777666655554443
No 296
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=65.53 E-value=3.6 Score=44.67 Aligned_cols=76 Identities=8% Similarity=-0.006 Sum_probs=56.3
Q ss_pred ccccchhhhhhcceeeeecc-cch---H-------HHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007653 158 KTKQYDECIKVGSEVLAYDA-KNV---K-------ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (594)
Q Consensus 158 klg~y~eAi~~~~~AL~ldP-~~~---k-------a~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~ 226 (594)
..++|..|++.|.+.-.+.- ..+ + .--.+..||+++++.+.|+....+.+.++|.+..-+-+...+-..
T Consensus 195 Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~ 274 (569)
T PF15015_consen 195 AAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRR 274 (569)
T ss_pred HHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHH
Confidence 35667777777777654432 111 1 123478899999999999999999999999998877777778888
Q ss_pred hhhccCC
Q 007653 227 LMKEDGH 233 (594)
Q Consensus 227 l~~~~~a 233 (594)
|.++.++
T Consensus 275 LeRy~eA 281 (569)
T PF15015_consen 275 LERYSEA 281 (569)
T ss_pred HHHHHHH
Confidence 8877654
No 297
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=64.43 E-value=4.7 Score=34.47 Aligned_cols=45 Identities=13% Similarity=0.199 Sum_probs=36.2
Q ss_pred hhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccc
Q 007653 92 IDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGI 136 (594)
Q Consensus 92 ~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~ 136 (594)
+.+.+..+++...+.+.++..++..|+|++|++.+.++++.++.+
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 444555688889999999999999999999999999999987765
No 298
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=64.01 E-value=1.3 Score=37.01 Aligned_cols=34 Identities=29% Similarity=0.355 Sum_probs=28.6
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccc
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGI 136 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~ 136 (594)
+......|..+|...+..+|+..++++++..++.
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~ 39 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDR 39 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCCh
Confidence 4567788888999999999999999999876554
No 299
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=63.49 E-value=7.6 Score=39.88 Aligned_cols=90 Identities=11% Similarity=0.139 Sum_probs=72.6
Q ss_pred cccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhh-
Q 007653 116 EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG- 194 (594)
Q Consensus 116 ~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg- 194 (594)
..+|.++..+|+..+..+.. -..|++....+|.++|.|...|..|-.++..++
T Consensus 39 te~fr~~m~YfRAI~~~~E~--------------------------S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~ 92 (318)
T KOG0530|consen 39 TEDFRDVMDYFRAIIAKNEK--------------------------SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMS 92 (318)
T ss_pred chhHHHHHHHHHHHHhcccc--------------------------CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHH
Confidence 35677777777666554333 357888899999999999999998888888775
Q ss_pred hHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653 195 RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 231 (594)
Q Consensus 195 ~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~ 231 (594)
++.+-+++++..++-+|+|-.+|...+.+.+.++...
T Consensus 93 dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s 129 (318)
T KOG0530|consen 93 DLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPS 129 (318)
T ss_pred HHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcc
Confidence 5788899999999999999999999999888887443
No 300
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=63.40 E-value=3.4 Score=42.48 Aligned_cols=108 Identities=19% Similarity=0.067 Sum_probs=75.3
Q ss_pred HHHHHHHhcccccc----cccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc-------cchhhhhhcc
Q 007653 102 AAKMLKKQGNELYS----EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-------QYDECIKVGS 170 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~----~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg-------~y~eAi~~~~ 170 (594)
.+....++|..+.. ..++.+|..+|.++.+..-... ..+.++++.+|..-. ++..|+..|.
T Consensus 108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a--------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~ 179 (292)
T COG0790 108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA--------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYR 179 (292)
T ss_pred cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH--------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHH
Confidence 34566667776655 5589999999999988633321 012566776666542 3347888888
Q ss_pred eeeeecccchHHHHHhccchhh----hhhHHHHhhhcccccccCCCCChHHHHHh
Q 007653 171 EVLAYDAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLR 221 (594)
Q Consensus 171 ~AL~ldP~~~ka~~~rg~al~~----lg~~~eAi~~lekAl~l~P~~~~a~~~l~ 221 (594)
++.... ++.+.+++|.+|.. -.++++|+.+|++|.+... ......++
T Consensus 180 ~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 180 KAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 877554 88899999988853 3478999999999998765 55555555
No 301
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.21 E-value=2.4 Score=45.75 Aligned_cols=100 Identities=16% Similarity=0.147 Sum_probs=73.1
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeec------
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD------ 176 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ld------ 176 (594)
-.++..+|..|...|+++.|+++|.++-.++..... .+..|.|+-.+-..+++|-....+..+|...-
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh------vInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~ 223 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH------VINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENL 223 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH------HHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhH
Confidence 356888899999999999999999997665443321 13356666666666788887777777765431
Q ss_pred --ccchHHHHHhccchhhhhhHHHHhhhcccccc
Q 007653 177 --AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE 208 (594)
Q Consensus 177 --P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~ 208 (594)
--.++..+.-|.+++.+++|..|.++|-.+..
T Consensus 224 ~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 224 AQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 12356778889999999999999999876644
No 302
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=62.47 E-value=4.5 Score=43.64 Aligned_cols=122 Identities=13% Similarity=0.102 Sum_probs=87.9
Q ss_pred HhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhc
Q 007653 90 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 169 (594)
Q Consensus 90 ~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~ 169 (594)
.......+..++.+-.-..-+..+|+.|+..++-..++.+.+..|+-. ++.+|...+--+.++.-+
T Consensus 250 ~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--------------ia~lY~~ar~gdta~dRl 315 (531)
T COG3898 250 DDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--------------IALLYVRARSGDTALDRL 315 (531)
T ss_pred HHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--------------HHHHHHHhcCCCcHHHHH
Confidence 333444455566666666667788999999999999999998877652 344454444445555544
Q ss_pred cee---eeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007653 170 SEV---LAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (594)
Q Consensus 170 ~~A---L~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~ 226 (594)
.++ -.+.|+|....+.++.+-+.-|+|..|....+.+..++|... ++-.+..+++.
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdIeeA 374 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES-AYLLLADIEEA 374 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHHHhh
Confidence 444 356799999999999999999999999999999999998743 44555555443
No 303
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.94 E-value=2.5 Score=47.97 Aligned_cols=72 Identities=18% Similarity=0.109 Sum_probs=60.9
Q ss_pred ecccCceeeeccccchhhhhhcceeeeecc------cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHH
Q 007653 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDA------KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADV 219 (594)
Q Consensus 148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP------~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~ 219 (594)
+.-|-|.-+++.++|..+++.|...+..-| +.+|...++..||..+.++|.|+++++.|-+.+|.++-.+..
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~ 433 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL 433 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 345678888999999999999998886544 468889999999999999999999999999999987654433
No 304
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=60.79 E-value=4.3 Score=29.07 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=27.4
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhcccc
Q 007653 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQG 135 (594)
Q Consensus 104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~ 135 (594)
+.+..+|.+.+..++|.+|+..|.++|++...
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~ 33 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEE 33 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45778899999999999999999999987543
No 305
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=60.43 E-value=7.4 Score=42.08 Aligned_cols=107 Identities=10% Similarity=0.102 Sum_probs=72.1
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec---cccchhhhhhcce-eeeecccc
Q 007653 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK---TKQYDECIKVGSE-VLAYDAKN 179 (594)
Q Consensus 104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k---lg~y~eAi~~~~~-AL~ldP~~ 179 (594)
....++=..|...++|+.=|.+++. ++..|.+... . ...+..-+|.++.+ .|+.++|+..+.. .....+.+
T Consensus 142 div~~lllSyRdiqdydamI~Lve~-l~~~p~~~~~--~--~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~ 216 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVET-LEALPTCDVA--N--QHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPD 216 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHH-hhccCccchh--c--chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCC
Confidence 3444444456667777766665544 4444433210 0 11123345666666 8999999999998 55667788
Q ss_pred hHHHHHhccchhhh---------hhHHHHhhhcccccccCCCCCh
Q 007653 180 VKALYRRGQAYKDI---------GRLEEAVSDLSNAHEVSPDDGT 215 (594)
Q Consensus 180 ~ka~~~rg~al~~l---------g~~~eAi~~lekAl~l~P~~~~ 215 (594)
++.+..+|.+|.++ ..+++|+.+|.++.+++|+.-.
T Consensus 217 ~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~ 261 (374)
T PF13281_consen 217 PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS 261 (374)
T ss_pred hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc
Confidence 99999999988653 3578899999999999987543
No 306
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.44 E-value=4.1 Score=44.99 Aligned_cols=103 Identities=21% Similarity=0.172 Sum_probs=78.2
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~ 178 (594)
..-.+..+.-+|.....-+.|+.|..+|..|.++.... .+.+.|-.|+|..|++.++-+.--+..+. +.|.
T Consensus 363 r~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~------dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~ 433 (629)
T KOG2300|consen 363 RAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI------DLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPL 433 (629)
T ss_pred HHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH------HHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCC
Confidence 33456778889999999999999999999998865443 23456778999999998765443333322 2333
Q ss_pred ----------chHHHHHhccchhhhhhHHHHhhhcccccccC
Q 007653 179 ----------NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 210 (594)
Q Consensus 179 ----------~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~ 210 (594)
-..++|..|.-.+..+++.||...+++.++..
T Consensus 434 nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 434 NTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 24578888999999999999999999999886
No 307
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=57.50 E-value=41 Score=35.60 Aligned_cols=148 Identities=16% Similarity=0.227 Sum_probs=79.4
Q ss_pred CCcchHHHHHHHHhcChhHHHHhhhhhccC-CCchhhhhhhhhcCCChhHHHHHHHHh-----hcCChHHHHHHH-----
Q 007653 21 MSPDDFARIQQQMMANPELMRIATENMKNM-RPEDLKCAAEQLTHTPPEEVAEIGEKL-----ANASPEEIATMR----- 89 (594)
Q Consensus 21 m~p~~l~r~~~~m~~~p~l~r~A~e~mk~~-~pe~~~~a~e~l~~~~pee~~~~~~~~-----~~~~~~el~aa~----- 89 (594)
+.+..+.+.--+++++.+++.-++...++. ..+++..++.+-+..-..++....+.+ .-..|+-++...
T Consensus 32 y~~keLle~k~~ll~~TNMiDy~md~~k~l~~sed~p~a~~ekr~~Vla~lkeLe~ev~piv~~le~Pd~~~~~~~~k~~ 111 (432)
T KOG2758|consen 32 YDEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSEDMPNALVEKRTEVLAELKELEEEVAPIVKVLENPDLIAALRSDKDR 111 (432)
T ss_pred CCHHHHHHHHHHHHcccchHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHhhhhH
Confidence 477778888888999999999999988877 344444332221111111111111111 111233222221
Q ss_pred ----HhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhh
Q 007653 90 ----ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 165 (594)
Q Consensus 90 ----~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eA 165 (594)
+.++..-.+.++..+.++..+...|..|+|..|..++--...+.+.... ..+...|-.+| .-.-+.+|+.|
T Consensus 112 ~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~----n~lsalwGKlA-SEIL~qnWd~A 186 (432)
T KOG2758|consen 112 VQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDR----NYLSALWGKLA-SEILTQNWDGA 186 (432)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcch----hhHHHHHHHHH-HHHHHhhHHHH
Confidence 3334444467888899999999999999999988874333322222110 00011122221 11235677777
Q ss_pred hhhcceee
Q 007653 166 IKVGSEVL 173 (594)
Q Consensus 166 i~~~~~AL 173 (594)
.+++.+.-
T Consensus 187 ~edL~rLr 194 (432)
T KOG2758|consen 187 LEDLTRLR 194 (432)
T ss_pred HHHHHHHH
Confidence 77776653
No 308
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=57.20 E-value=22 Score=41.96 Aligned_cols=83 Identities=22% Similarity=0.266 Sum_probs=64.5
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHH
Q 007653 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL 183 (594)
Q Consensus 104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~ 183 (594)
..|+--|..+-..|+.+.|+.+|..|-.+ +.+-.++.-+|+..+|....++ ..+-.+.
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~-----------------fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAc 970 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKDY-----------------FSMVRIKCIQGKTDKAARIAEE-----SGDKAAC 970 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhh-----------------hhheeeEeeccCchHHHHHHHh-----cccHHHH
Confidence 34555666777899999999999998653 3333334448999998886655 4688899
Q ss_pred HHhccchhhhhhHHHHhhhcccccc
Q 007653 184 YRRGQAYKDIGRLEEAVSDLSNAHE 208 (594)
Q Consensus 184 ~~rg~al~~lg~~~eAi~~lekAl~ 208 (594)
|.+|.-|-..|++.+|+..|.+|-.
T Consensus 971 YhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 971 YHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999988754
No 309
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=56.82 E-value=2.8 Score=43.56 Aligned_cols=52 Identities=21% Similarity=0.151 Sum_probs=26.0
Q ss_pred HHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653 182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 233 (594)
Q Consensus 182 a~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a 233 (594)
.+...+..|...|.+.+|+...++++.++|=+...++.+-.+...+++.-.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~ 332 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISA 332 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhh
Confidence 3333444455555555555555555555555555555555544444443333
No 310
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=56.68 E-value=1.1 Score=46.45 Aligned_cols=65 Identities=17% Similarity=0.192 Sum_probs=57.6
Q ss_pred eeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccc
Q 007653 144 LLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE 208 (594)
Q Consensus 144 l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~ 208 (594)
+.+.++.-++..+...++++.++..+++.+.++|-+-.+|+++=.+|+..|+...|+..|++.-.
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34557778888888999999999999999999999999999999999999999999999987655
No 311
>smart00727 STI1 Heat shock chaperonin-binding motif.
Probab=56.53 E-value=11 Score=27.03 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=22.2
Q ss_pred ChhhhchhHHHhhhcChHHHHHHHHH
Q 007653 385 RPDMLKTASDVMSKMSSEDLQKMFEM 410 (594)
Q Consensus 385 ~P~m~~~a~~mm~nm~pe~l~~m~~m 410 (594)
||.+..+.++|++| |+.+..|++.
T Consensus 10 ~P~~~~~l~~~~~n--P~~~~~~~~~ 33 (41)
T smart00727 10 NPQVQSLLQDMQQN--PDMLAQMLQE 33 (41)
T ss_pred CHHHHHHHHHHHHC--HHHHHHHHHh
Confidence 89999999999999 9999998864
No 312
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=55.32 E-value=6.8 Score=44.27 Aligned_cols=93 Identities=19% Similarity=0.085 Sum_probs=70.5
Q ss_pred hHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHh
Q 007653 121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV 200 (594)
Q Consensus 121 eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi 200 (594)
-++..|...+.+++..+. +...+. +...+..++....++.....+|..||.++.++.+++.++...|....++
T Consensus 49 ~~~~a~~~~~~~~~~~~~------llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~ 121 (620)
T COG3914 49 LAIYALLLGIAINDVNPE------LLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLAL 121 (620)
T ss_pred HHHHHHHccCccCCCCHH------HHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHH
Confidence 366667666666666653 111222 6777778888888999999999999999999999999998887766665
Q ss_pred hhccc-ccccCCCCChHHHHH
Q 007653 201 SDLSN-AHEVSPDDGTIADVL 220 (594)
Q Consensus 201 ~~lek-Al~l~P~~~~a~~~l 220 (594)
..+.. +..+.|++..+...+
T Consensus 122 ~~~~~~a~~~~~~~~~~~~~~ 142 (620)
T COG3914 122 ADISEIAEWLSPDNAEFLGHL 142 (620)
T ss_pred HHHHHHHHhcCcchHHHHhhH
Confidence 55554 999999998776666
No 313
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=54.83 E-value=7 Score=42.15 Aligned_cols=101 Identities=17% Similarity=0.098 Sum_probs=64.9
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeee--cccCceeeeccccchhhhhhcceeeeec
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLAC--SLNSMSCYLKTKQYDECIKVGSEVLAYD 176 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~--~~N~a~~~~klg~y~eAi~~~~~AL~ld 176 (594)
++-.+..+..++.++..+|++..|.+..++||-.....-.... ..+ -...|.|.+.-.+++ |
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F----~~~~~~~~~g~~rL~~~~~e------------N 99 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSF----SPFRSNLTSGNCRLDYRRPE------------N 99 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHh----hhhhcccccCccccCCcccc------------c
Confidence 4555778999999999999999999999999865443210000 000 111222322211111 3
Q ss_pred ccchHHHHHhccchhhhhhHHHHhhhcccccccCCC-CCh
Q 007653 177 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD-DGT 215 (594)
Q Consensus 177 P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~-~~~ 215 (594)
-....++++....+.+.|.|.-|+++++-.+.+||. |+-
T Consensus 100 R~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~ 139 (360)
T PF04910_consen 100 RQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPL 139 (360)
T ss_pred hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc
Confidence 345667888888888888888888888888888887 543
No 314
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=54.02 E-value=9.2 Score=31.72 Aligned_cols=31 Identities=19% Similarity=0.178 Sum_probs=24.7
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhc
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (594)
.+..+...+..+=+.|+|.+|+.+|+++|++
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3556777777888899999999999888774
No 315
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=53.68 E-value=3.1 Score=45.37 Aligned_cols=101 Identities=15% Similarity=0.121 Sum_probs=62.2
Q ss_pred ccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccch
Q 007653 111 NELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY 190 (594)
Q Consensus 111 n~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al 190 (594)
.++.-.|+|..|++..+- |++....--...-..++.+++..|.||+-+++|.+|++.+...|-.--..-..++.+..-|
T Consensus 130 Rvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q~ 208 (404)
T PF10255_consen 130 RVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSYQY 208 (404)
T ss_pred HHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchh
Confidence 356778999999987543 3332221112233445778999999999999999999999887632221111222222222
Q ss_pred hh-hhhHHHHhhhcccccccCCC
Q 007653 191 KD-IGRLEEAVSDLSNAHEVSPD 212 (594)
Q Consensus 191 ~~-lg~~~eAi~~lekAl~l~P~ 212 (594)
-. .+..|.....+--++.+.|.
T Consensus 209 d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 209 DQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred hHHHhHHHHHHHHHHHHHHhCCC
Confidence 21 35566666677777778885
No 316
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=52.56 E-value=4.3 Score=46.26 Aligned_cols=122 Identities=11% Similarity=0.073 Sum_probs=83.5
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164 (594)
Q Consensus 85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e 164 (594)
++..++-|...+...+..++...|.|+.+-...-|.++.+.|++.|.+.+--.. -.....|+-....-+...+.+.
T Consensus 493 festk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v----~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV----YDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH----HHHHHHHHHHHHHHhcCCCHHH
Confidence 334556677777778888888999999998888899999999999988764321 0011234444444455667888
Q ss_pred hhhhcceeeeecc-cchHHHHHhccch-hhhhhHHHHhhhcccccccC
Q 007653 165 CIKVGSEVLAYDA-KNVKALYRRGQAY-KDIGRLEEAVSDLSNAHEVS 210 (594)
Q Consensus 165 Ai~~~~~AL~ldP-~~~ka~~~rg~al-~~lg~~~eAi~~lekAl~l~ 210 (594)
|...|++||+..| .+++.+|.+-.-+ -+-|--..|+..|++|..--
T Consensus 569 aRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v 616 (835)
T KOG2047|consen 569 ARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAV 616 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 9999999998775 4566555443322 34566777888888876543
No 317
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=52.47 E-value=3.2 Score=42.17 Aligned_cols=62 Identities=11% Similarity=-0.134 Sum_probs=51.1
Q ss_pred HHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhh
Q 007653 122 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD 192 (594)
Q Consensus 122 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~ 192 (594)
|+.+|.+|+.+.|.... .|+.+|.++...+++-.|+-+|-+++...-.++.+.-++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~---------p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGN---------PYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSH---------HHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCC---------cccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78899999999999954 899999999999999999999999998776678888888777776
No 318
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.82 E-value=14 Score=37.61 Aligned_cols=149 Identities=18% Similarity=0.213 Sum_probs=91.7
Q ss_pred HHHHhhhh-hccCCCchhh----hhhhhhcCCChhHHHHHHHHhhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccc
Q 007653 39 LMRIATEN-MKNMRPEDLK----CAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNEL 113 (594)
Q Consensus 39 l~r~A~e~-mk~~~pe~~~----~a~e~l~~~~pee~~~~~~~~~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~ 113 (594)
+.+.|... ..+.+|+... +++..+.+..|++.-..+++..+.--++ .......+.+...++.+
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~------------dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED------------DRDQMAFELYGKCSRVL 160 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc------------chHHHHHHHHHHhhhHh
Confidence 77778776 4577786654 5777778889998888777654432111 01112345677888999
Q ss_pred cccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee----cccchHHHHHhccc
Q 007653 114 YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY----DAKNVKALYRRGQA 189 (594)
Q Consensus 114 ~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l----dP~~~ka~~~rg~a 189 (594)
.+..+|.+|...+.+-..+...+.. .......|+..-.+|+-..+|..|..+|+....+ .|+....+-++-.+
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~---y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDA---YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhh---cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 9999999998887776554333211 0000112444445666777999999999886554 34555555555444
Q ss_pred hhhhhhHHHHhhhc
Q 007653 190 YKDIGRLEEAVSDL 203 (594)
Q Consensus 190 l~~lg~~~eAi~~l 203 (594)
| ..|+.++..+.+
T Consensus 238 y-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 238 Y-DEGDIEEIKKVL 250 (308)
T ss_pred h-ccCCHHHHHHHH
Confidence 3 344555555444
No 319
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=50.74 E-value=2.8 Score=44.57 Aligned_cols=82 Identities=9% Similarity=-0.051 Sum_probs=63.9
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHH
Q 007653 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL 183 (594)
Q Consensus 104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~ 183 (594)
...++.+.+.++.+.|..|+..-..+++.++.. ..+|+.++..|+.+.+|++|++++..+....|++....
T Consensus 276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~---------tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~ 346 (372)
T KOG0546|consen 276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSK---------TKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIE 346 (372)
T ss_pred ccccchHHhcccccCCCcceeccccccccChhh---------CcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHH
Confidence 344556667788888999988888888865555 56899999999999999999999999999999987755
Q ss_pred HHhccchhhhh
Q 007653 184 YRRGQAYKDIG 194 (594)
Q Consensus 184 ~~rg~al~~lg 194 (594)
..+..+-....
T Consensus 347 ~~~~~~~~~~~ 357 (372)
T KOG0546|consen 347 EELENVRQKKK 357 (372)
T ss_pred HHHHHhhhHHH
Confidence 54444444333
No 320
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.58 E-value=10 Score=43.33 Aligned_cols=115 Identities=17% Similarity=0.102 Sum_probs=78.8
Q ss_pred HHHHHhccccc-----ccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc-----cchhhhhhcceee
Q 007653 104 KMLKKQGNELY-----SEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-----QYDECIKVGSEVL 173 (594)
Q Consensus 104 ~~l~~~Gn~~~-----~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg-----~y~eAi~~~~~AL 173 (594)
.+....|.+++ ..++.+.|+.+|..+..-..... ...+..+.+.+|.||.+.. ++..|+..|.++-
T Consensus 245 ~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a----~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA 320 (552)
T KOG1550|consen 245 EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA----TKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAA 320 (552)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH----hhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHH
Confidence 34444454443 45788999999999976100000 0001336778888888753 6788999998887
Q ss_pred eecccchHHHHHhccchhhhh---hHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007653 174 AYDAKNVKALYRRGQAYKDIG---RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (594)
Q Consensus 174 ~ldP~~~ka~~~rg~al~~lg---~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~ 226 (594)
. -.++.+.|++|.+|..-- ++..|..+|..|... .+..+..+++.+...
T Consensus 321 ~--~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 321 E--LGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL 372 (552)
T ss_pred h--cCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh
Confidence 4 478889999999997544 578999999998754 566777777776544
No 321
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=50.05 E-value=12 Score=26.31 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=24.2
Q ss_pred HHHHHhcccccccccchhHHHH--HHHhhhcccc
Q 007653 104 KMLKKQGNELYSEGRFSNALQK--YLLAKKNLQG 135 (594)
Q Consensus 104 ~~l~~~Gn~~~~~g~y~eAi~~--Y~kAL~l~p~ 135 (594)
+.+...|..++..|+|++|+.. |.-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4677888999999999999999 5466665543
No 322
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=49.58 E-value=3.7 Score=44.23 Aligned_cols=106 Identities=19% Similarity=0.014 Sum_probs=79.6
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhcccc-ccccccceeeeeecccCceeeeccccchhhhhhcceeeeecc
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG-IHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA 177 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~-~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP 177 (594)
+..--.++......+.++|.|..|++..+-.+.++|. +|- -+.+-+=...++.++|+--++.++.......
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~--------g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~ 170 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPL--------GVLLFIDYYALRSRQYQWLIDFSESPLAKCY 170 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc--------hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhh
Confidence 4445566777777889999999999999999999999 652 2334444455677888888888877654212
Q ss_pred c-----chHHHHHhccchhhhhhH---------------HHHhhhcccccccCCC
Q 007653 178 K-----NVKALYRRGQAYKDIGRL---------------EEAVSDLSNAHEVSPD 212 (594)
Q Consensus 178 ~-----~~ka~~~rg~al~~lg~~---------------~eAi~~lekAl~l~P~ 212 (594)
. -+..-|.++.|+..+++- ++|...+.+|+...|.
T Consensus 171 ~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 171 RNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 1 235678889999999888 8899999999887774
No 323
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=49.46 E-value=2.6 Score=46.15 Aligned_cols=114 Identities=13% Similarity=0.160 Sum_probs=65.1
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccc------cccceeeeeecccCceeeeccc--c-----------
Q 007653 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLLLACSLNSMSCYLKTK--Q----------- 161 (594)
Q Consensus 101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~------~e~~~l~~~~~~N~a~~~~klg--~----------- 161 (594)
.......+.|..++..|+|.+|+..|+..|...|-..- .+..++...|.-.+-.+-+.+. .
T Consensus 202 ~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR 281 (422)
T PF06957_consen 202 SSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKR 281 (422)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHH
Confidence 34455667888999999999999999999987664321 1122222222111111111111 1
Q ss_pred chhhhhhcceeeeecccchHHHHHhccch-hhhhhHHHHhhhcccccccCCCCCh
Q 007653 162 YDECIKVGSEVLAYDAKNVKALYRRGQAY-KDIGRLEEAVSDLSNAHEVSPDDGT 215 (594)
Q Consensus 162 y~eAi~~~~~AL~ldP~~~ka~~~rg~al-~~lg~~~eAi~~lekAl~l~P~~~~ 215 (594)
--|-. .|-.-.+|.|.|...-.+.|... ++.++|.-|....++.|++.|....
T Consensus 282 ~lELA-AYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~ 335 (422)
T PF06957_consen 282 NLELA-AYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV 335 (422)
T ss_dssp HHHHH-HHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred HHHHH-HHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence 11222 23333567777777667777665 5899999999999999999997643
No 324
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.26 E-value=47 Score=40.23 Aligned_cols=106 Identities=14% Similarity=0.113 Sum_probs=74.3
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecc------
Q 007653 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA------ 177 (594)
Q Consensus 104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP------ 177 (594)
..+...|+.+|..+.|+.|.-+|...- -|..++..+..+|+|..|++..++|-...-
T Consensus 1195 A~i~~vGdrcf~~~~y~aAkl~y~~vS-----------------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vcf 1257 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYSNVS-----------------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCF 1257 (1666)
T ss_pred hhHHHHhHHHhhhhhhHHHHHHHHHhh-----------------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHH
Confidence 456778999999999999999997653 356788888999999999998888743210
Q ss_pred -------------------cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007653 178 -------------------KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (594)
Q Consensus 178 -------------------~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~ 226 (594)
-+++-+-.+-.-|...|.|+|-+..++.++.+.-.+--....|+.+..+
T Consensus 1258 aCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1258 ACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 0122222334445667888888888888888876665555555554333
No 325
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=46.11 E-value=12 Score=35.35 Aligned_cols=72 Identities=8% Similarity=-0.088 Sum_probs=61.1
Q ss_pred ccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 158 klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
...++.++...+...--+.|+.+.....-|..+...|+|++|+..|+....-.+..+-....+..|...+++
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 367777777777777778999999999999999999999999999999988877777777888888777754
No 326
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=45.90 E-value=3.7 Score=42.44 Aligned_cols=104 Identities=18% Similarity=0.152 Sum_probs=70.4
Q ss_pred ccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc-cchhhhhhcceeeeec-------cc------
Q 007653 113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-QYDECIKVGSEVLAYD-------AK------ 178 (594)
Q Consensus 113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg-~y~eAi~~~~~AL~ld-------P~------ 178 (594)
..++|+++.|..+|.|+-...+ .........+...++|.|...+..+ +|++|+..+++++++- ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 4678999999999999977653 1112223345567899999999999 9999999999998772 11
Q ss_pred -chHHHHHhccchhhhhhHH---HHhhhcccccccCCCCChHH
Q 007653 179 -NVKALYRRGQAYKDIGRLE---EAVSDLSNAHEVSPDDGTIA 217 (594)
Q Consensus 179 -~~ka~~~rg~al~~lg~~~---eAi~~lekAl~l~P~~~~a~ 217 (594)
....+..++.+|...+.++ +|+..++.+-.-.|+.+.+.
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 2445666788887766654 34444444444445555544
No 327
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=45.36 E-value=13 Score=29.68 Aligned_cols=30 Identities=30% Similarity=0.280 Sum_probs=24.3
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhc
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (594)
+..+...|..+=..|+|.+|+.+|.+++++
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 445667777777889999999999999875
No 328
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=45.32 E-value=14 Score=30.64 Aligned_cols=31 Identities=29% Similarity=0.298 Sum_probs=25.8
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhcc
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNL 133 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~ 133 (594)
+..+..++..+=+.|+|.+|+.+|.++|++.
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l 36 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQLL 36 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 4556777778888999999999999999853
No 329
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=45.21 E-value=19 Score=38.24 Aligned_cols=98 Identities=13% Similarity=0.057 Sum_probs=67.1
Q ss_pred cccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee--cccchHHHHHhccchh
Q 007653 114 YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--DAKNVKALYRRGQAYK 191 (594)
Q Consensus 114 ~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l--dP~~~ka~~~rg~al~ 191 (594)
-..-+|..-..+|.-...+-|.- .+-+|++.+.-+..=...++...+....- -..+-.+|.-||-.+.
T Consensus 307 aedtDW~~I~aLYdaL~~~apSP----------vV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~ 376 (415)
T COG4941 307 AEDTDWPAIDALYDALEQAAPSP----------VVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLA 376 (415)
T ss_pred cCCCChHHHHHHHHHHHHhCCCC----------eEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHH
Confidence 34445665555666555554443 25689998887666666666655544432 2345667788999999
Q ss_pred hhhhHHHHhhhcccccccCCCCChHHHHHh
Q 007653 192 DIGRLEEAVSDLSNAHEVSPDDGTIADVLR 221 (594)
Q Consensus 192 ~lg~~~eAi~~lekAl~l~P~~~~a~~~l~ 221 (594)
++|+.++|...|++|+.+.++..+....+.
T Consensus 377 rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 377 RLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred HhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 999999999999999999887665444433
No 330
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=44.98 E-value=11 Score=39.59 Aligned_cols=78 Identities=5% Similarity=-0.031 Sum_probs=63.0
Q ss_pred ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccc-Cceeeeccccchhhhhhcceeeeec
Q 007653 98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLN-SMSCYLKTKQYDECIKVGSEVLAYD 176 (594)
Q Consensus 98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N-~a~~~~klg~y~eAi~~~~~AL~ld 176 (594)
+.+..+..|....+...+.|-|.+--..|.+++...|.+.+ +|.- .+.-|...++++.|...+.++|+++
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvd---------lWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVD---------LWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCce---------eeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 45566777888887778888999999999999999998854 5554 3444566789999999999999999
Q ss_pred ccchHHHH
Q 007653 177 AKNVKALY 184 (594)
Q Consensus 177 P~~~ka~~ 184 (594)
|++++.|+
T Consensus 173 ~~~p~iw~ 180 (435)
T COG5191 173 SRSPRIWI 180 (435)
T ss_pred CCCchHHH
Confidence 99988765
No 331
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=44.57 E-value=4.7 Score=44.43 Aligned_cols=56 Identities=7% Similarity=0.151 Sum_probs=26.6
Q ss_pred eccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007653 157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212 (594)
Q Consensus 157 ~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~ 212 (594)
.+++++++|.....-.|.-.-..++.+.--+-.-..+|-++++.-++++.+.++|.
T Consensus 368 ~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred hchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 34555555555444444333333333333333344455555555555555555553
No 332
>PRK09687 putative lyase; Provisional
Probab=44.47 E-value=1.4e+02 Score=30.88 Aligned_cols=38 Identities=8% Similarity=0.162 Sum_probs=18.3
Q ss_pred HHHHHhhcCCcchHHHHHHHHhcChh-HHHH-hhhhhccC
Q 007653 13 LAQEQMNRMSPDDFARIQQQMMANPE-LMRI-ATENMKNM 50 (594)
Q Consensus 13 ~A~e~m~~m~p~~l~r~~~~m~~~p~-l~r~-A~e~mk~~ 50 (594)
.|+..+.....++.......++.+++ .+|. |+..+..+
T Consensus 42 ~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~l 81 (280)
T PRK09687 42 SSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQL 81 (280)
T ss_pred HHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 55555665544433333344555555 5555 44444333
No 333
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=43.69 E-value=17 Score=33.94 Aligned_cols=55 Identities=22% Similarity=0.165 Sum_probs=43.2
Q ss_pred cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007653 178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 232 (594)
Q Consensus 178 ~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~ 232 (594)
.-.+....++...+..|+|.-|...++.++..+|+|..++..+..+.++++....
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 3456667778888889999999999999999999999999999999988877554
No 334
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=43.47 E-value=4 Score=40.69 Aligned_cols=71 Identities=18% Similarity=0.020 Sum_probs=46.8
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY 175 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l 175 (594)
.+..+..+++......-+..|+..|.++++....-.. ... ...+.+-+|.+++++|++++|+..+.++|..
T Consensus 124 lAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~-~~~--~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 124 LAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIE-GMD--EATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCC-Cch--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3444444444444444467888888888875543110 000 1236677999999999999999999999864
No 335
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=42.91 E-value=2.4 Score=38.39 Aligned_cols=71 Identities=15% Similarity=0.062 Sum_probs=49.5
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccc--cccceeeeeecccCceeeeccccchhhhhhcceee
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS--SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL 173 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~--~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL 173 (594)
+-.+-.+.-.+...|+|++++..-.++|.+...-.+ .+.-.+-+.+.++++.++-.+|+.++|+..|+.+-
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 445556667788899999999888888887654321 11223345567889999999999999999988764
No 336
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=42.34 E-value=16 Score=30.30 Aligned_cols=30 Identities=40% Similarity=0.398 Sum_probs=24.7
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhc
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (594)
+..+...|..+=+.|+|.+|+.+|.++|++
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 455677778888899999999999999874
No 337
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=42.15 E-value=34 Score=40.63 Aligned_cols=109 Identities=18% Similarity=0.126 Sum_probs=79.2
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc--
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-- 179 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~-- 179 (594)
.+......+..+....+|.+|..+..++....+.-.......+++..-.-++.+....+++++|++.++.++..-|.+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 344556667777888899999888777766554421111122223333446667777899999999999999877654
Q ss_pred ---hHHHHHhccchhhhhhHHHHhhhcccccccC
Q 007653 180 ---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 210 (594)
Q Consensus 180 ---~ka~~~rg~al~~lg~~~eAi~~lekAl~l~ 210 (594)
..++...|.+..-.|+|++|..+...+.++.
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 5678889999999999999999998887774
No 338
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.67 E-value=55 Score=26.72 Aligned_cols=33 Identities=33% Similarity=0.384 Sum_probs=26.2
Q ss_pred HHHHHHHHhhc--CCHHHHhhhhhhhccccchhhH
Q 007653 493 MKQMFSSMVKN--MSPEMMANMSEQFGIKLSREDT 525 (594)
Q Consensus 493 m~~m~~~mmk~--m~p~~~~~m~~~~g~~~~~~~a 525 (594)
.++|...+.+| .++|++.-|..|+|.|-|..+-
T Consensus 26 rk~~~k~lk~NPpine~~iR~M~~qmGqKpSe~kI 60 (71)
T COG3763 26 RKQMKKQLKDNPPINEEMIRMMMAQMGQKPSEKKI 60 (71)
T ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCchHHHH
Confidence 35556666777 8899999999999999997653
No 339
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=41.64 E-value=8.3 Score=41.82 Aligned_cols=103 Identities=12% Similarity=-0.018 Sum_probs=81.9
Q ss_pred cchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc--cchhhhhhcceeeeecccchHHHHHhccchhhhhh
Q 007653 118 RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK--QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR 195 (594)
Q Consensus 118 ~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg--~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~ 195 (594)
-.++-+.+...+|+.+|.. ..+|+-|..++.+.. ++..=++.|.++|++||.|..+|..|=.++.....
T Consensus 90 ~ld~eL~~~~~~L~~npks---------Y~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~ 160 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKS---------YGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAER 160 (421)
T ss_pred hhHHHHHHHHHHHHhCchh---------HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhc
Confidence 5677788888899999988 448888888887655 36788899999999999999998887666654433
Q ss_pred ----HHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 196 ----LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 196 ----~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
..+-++++.+++.-++.|-.+|.....+...+-.
T Consensus 161 ~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~ 198 (421)
T KOG0529|consen 161 SRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHP 198 (421)
T ss_pred ccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhcc
Confidence 5778888899998899998888888877665543
No 340
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=41.46 E-value=7.4 Score=41.19 Aligned_cols=61 Identities=8% Similarity=0.009 Sum_probs=52.1
Q ss_pred chhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007653 162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 222 (594)
Q Consensus 162 y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~ 222 (594)
.+.-+..|++||+.+|++.+.+..+=.+..++..-++..+-+++++..+|++..+|..+-.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~ 107 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLD 107 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 4667788999999999999998888888888888888899999999999998887765544
No 341
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=41.01 E-value=16 Score=26.98 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=20.2
Q ss_pred HHhccchhhhhhHHHHhhhcccccc
Q 007653 184 YRRGQAYKDIGRLEEAVSDLSNAHE 208 (594)
Q Consensus 184 ~~rg~al~~lg~~~eAi~~lekAl~ 208 (594)
+.++.+|...|+++.|...++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678888888888888888888774
No 342
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=40.99 E-value=40 Score=27.46 Aligned_cols=55 Identities=11% Similarity=0.194 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHhhcCCcchHHHHHHHHhcChh-HHHH-hhhhhccCCCchhhhhhhh
Q 007653 7 DPEMIRLAQEQMNRMSPDDFARIQQQMMANPE-LMRI-ATENMKNMRPEDLKCAAEQ 61 (594)
Q Consensus 7 ~P~~~r~A~e~m~~m~p~~l~r~~~~m~~~p~-l~r~-A~e~mk~~~pe~~~~a~e~ 61 (594)
+|.+...|...+.++...+.......++.|++ .+|. |+..+..+..++.......
T Consensus 13 ~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~~~~~~L~~ 69 (88)
T PF13646_consen 13 DPQVRAEAARALGELGDPEAIPALIELLKDEDPMVRRAAARALGRIGDPEAIPALIK 69 (88)
T ss_dssp SHHHHHHHHHHHHCCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 56777799999999966665555556778877 6666 7777777655555444444
No 343
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=39.89 E-value=12 Score=41.63 Aligned_cols=74 Identities=4% Similarity=-0.067 Sum_probs=59.0
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecccc-chhhhhhcceeeeecccch
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ-YDECIKVGSEVLAYDAKNV 180 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~-y~eAi~~~~~AL~ldP~~~ 180 (594)
.+..|.......-+.+.|.+--..|.++|.+.|..++ +|.-.|.-.+..+. .+.|...+.++|..+|+++
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~d---------LWI~aA~wefe~n~ni~saRalflrgLR~npdsp 174 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPD---------LWIYAAKWEFEINLNIESARALFLRGLRFNPDSP 174 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCch---------hHHhhhhhHHhhccchHHHHHHHHHHhhcCCCCh
Confidence 4555666665566666699999999999999999976 77777777777666 8889999999999999998
Q ss_pred HHHH
Q 007653 181 KALY 184 (594)
Q Consensus 181 ka~~ 184 (594)
+.|+
T Consensus 175 ~Lw~ 178 (568)
T KOG2396|consen 175 KLWK 178 (568)
T ss_pred HHHH
Confidence 8654
No 344
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=39.56 E-value=76 Score=35.00 Aligned_cols=28 Identities=18% Similarity=0.153 Sum_probs=14.3
Q ss_pred CCCCCCCccccccCccCCCCCCCC--CChh
Q 007653 360 NPHANGDSIETNFNGFRPGSTPPN--MRPD 387 (594)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~g~~~~~--~~P~ 387 (594)
++++.++++..+.+|+++|++.++ .||.
T Consensus 68 ~g~~s~~g~~s~~~gg~~~~~g~gsscnP~ 97 (641)
T KOG3915|consen 68 GGGGSGGGGGSSGNGGGGGGGGGGSSCNPN 97 (641)
T ss_pred CCCCCCCCccccCCCCCCCCCCCccccCCc
Confidence 333444555555666665444433 3776
No 345
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=39.48 E-value=7.6 Score=42.43 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=44.7
Q ss_pred ccCceeeeccccchhhhhhcceeeee---------cccchHHHHHhccchhhhhhHHHHhhhccccc
Q 007653 150 LNSMSCYLKTKQYDECIKVGSEVLAY---------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAH 207 (594)
Q Consensus 150 ~N~a~~~~klg~y~eAi~~~~~AL~l---------dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl 207 (594)
+-+..+|.-+|+|..|++..+-. ++ -+-+...+|..|.||.-++||.+|++.|...|
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666799999999876542 22 24577889999999999999999999998665
No 346
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=39.34 E-value=20 Score=33.76 Aligned_cols=83 Identities=10% Similarity=-0.059 Sum_probs=56.9
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHH
Q 007653 105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY 184 (594)
Q Consensus 105 ~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~ 184 (594)
.+...........++.++.......--+.|+.+. +-.--+..|...|+|.+|+..++...+-.+..+-+--
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e---------~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kA 82 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKE---------LDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKA 82 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccc---------cchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHH
Confidence 3334444444477777777777666667777754 4455677788888999999988888777666665555
Q ss_pred HhccchhhhhhH
Q 007653 185 RRGQAYKDIGRL 196 (594)
Q Consensus 185 ~rg~al~~lg~~ 196 (594)
-++.|++.+|+.
T Consensus 83 L~A~CL~al~Dp 94 (153)
T TIGR02561 83 LLALCLNAKGDA 94 (153)
T ss_pred HHHHHHHhcCCh
Confidence 667777777663
No 347
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.26 E-value=50 Score=40.06 Aligned_cols=57 Identities=14% Similarity=0.057 Sum_probs=44.4
Q ss_pred eecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccc
Q 007653 147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE 208 (594)
Q Consensus 147 ~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~ 208 (594)
.+|..+|.+.++.+...+||+.|-+| +++..|...-.+-.+.|.|++-++++.-|-+
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 37888888888888888999888776 5666677777777788888888888876644
No 348
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=37.64 E-value=22 Score=29.49 Aligned_cols=31 Identities=23% Similarity=0.197 Sum_probs=26.0
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhc
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (594)
.+..+..+|...=..|+|++|+.+|..+|++
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 3556777778888899999999999999985
No 349
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=36.24 E-value=81 Score=27.89 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=13.2
Q ss_pred HHHHhhcCCcchHHHHHHHH
Q 007653 14 AQEQMNRMSPDDFARIQQQM 33 (594)
Q Consensus 14 A~e~m~~m~p~~l~r~~~~m 33 (594)
..+....|+|++-.++...|
T Consensus 34 ~a~r~~~mspeqq~r~~~rm 53 (107)
T PF11304_consen 34 IAERWPSMSPEQQQRLRERM 53 (107)
T ss_pred HHHHHhcCCHHHHHHHHHHH
Confidence 45566777888777766633
No 350
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=36.03 E-value=19 Score=36.94 Aligned_cols=92 Identities=15% Similarity=0.053 Sum_probs=66.3
Q ss_pred HHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecc----ccchhhhhhcceeeeecccchH
Q 007653 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT----KQYDECIKVGSEVLAYDAKNVK 181 (594)
Q Consensus 106 l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl----g~y~eAi~~~~~AL~ldP~~~k 181 (594)
....+...+..++|..|+..|.++-..... ....+++.+|... +++.+|+..|..+ .+..++.
T Consensus 44 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-----------~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~ 110 (292)
T COG0790 44 ALLNGAGSAYPPDYAKALKSYEKAAELGDA-----------AALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAE 110 (292)
T ss_pred cccccccccccccHHHHHHHHHHhhhcCCh-----------HHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHH
Confidence 344445567788899999999888652211 1345566666543 3578899988844 4677888
Q ss_pred HHHHhccchhh----hhhHHHHhhhcccccccC
Q 007653 182 ALYRRGQAYKD----IGRLEEAVSDLSNAHEVS 210 (594)
Q Consensus 182 a~~~rg~al~~----lg~~~eAi~~lekAl~l~ 210 (594)
+.+++|..|.. ..++.+|+.+|++|....
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG 143 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC
Confidence 99999999986 458999999999998763
No 351
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.39 E-value=19 Score=40.03 Aligned_cols=124 Identities=12% Similarity=0.013 Sum_probs=87.6
Q ss_pred CChHHHHHHHHhhhhcccccc---hHHHHHHHhcccc-cccccchhHHHHHHHhhhccccccccccceeeeeecccCcee
Q 007653 80 ASPEEIATMRARIDAQMNYEF---NAAKMLKKQGNEL-YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSC 155 (594)
Q Consensus 80 ~~~~el~aa~~~~~a~~~~~~---~~a~~l~~~Gn~~-~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~ 155 (594)
..|.++....+.+++...+.+ -.+..+..+|..+ +..++++.|..+++++..+....|.. ..+...++.-++.|
T Consensus 20 ~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f--ydvKf~a~SlLa~l 97 (629)
T KOG2300|consen 20 SGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF--YDVKFQAASLLAHL 97 (629)
T ss_pred cCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH--HhhhhHHHHHHHHH
Confidence 344444445555555544332 2355677777765 55778899999999999877666542 24445677788999
Q ss_pred eeccc-cchhhhhhcceeeeecccch----HHHHHhccchhhhhhHHHHhhhccc
Q 007653 156 YLKTK-QYDECIKVGSEVLAYDAKNV----KALYRRGQAYKDIGRLEEAVSDLSN 205 (594)
Q Consensus 156 ~~klg-~y~eAi~~~~~AL~ldP~~~----ka~~~rg~al~~lg~~~eAi~~lek 205 (594)
|.... .+..+...++++|++...++ +..+.+++.+.-.++|..|++.+.-
T Consensus 98 h~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLav 152 (629)
T KOG2300|consen 98 HHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAV 152 (629)
T ss_pred HHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhc
Confidence 98887 78888889999999876554 4566778888888889888887653
No 352
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.09 E-value=7.5 Score=39.46 Aligned_cols=66 Identities=14% Similarity=0.186 Sum_probs=44.7
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcce
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE 171 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~ 171 (594)
......+|..|+..|+|++|+.+|+.+......... ..+...+...+..|+.++|+.+..+..+-+
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW---~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGW---WSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 445668899999999999999999999655433321 122233556667777777777776665543
No 353
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=34.98 E-value=25 Score=28.84 Aligned_cols=31 Identities=29% Similarity=0.268 Sum_probs=25.3
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhc
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (594)
.+..+...|...=..|+|++|+.+|.++++.
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3556777778888899999999999998874
No 354
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.79 E-value=7.2 Score=38.34 Aligned_cols=90 Identities=13% Similarity=0.081 Sum_probs=65.0
Q ss_pred ccCceeeeccccchhhhhhcceeeeeccc-c--hHHHHHhccchhhhhhHHHHhhhcccccccCCCC-ChHHHHHhHHHH
Q 007653 150 LNSMSCYLKTKQYDECIKVGSEVLAYDAK-N--VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-GTIADVLRDAKE 225 (594)
Q Consensus 150 ~N~a~~~~klg~y~eAi~~~~~AL~ldP~-~--~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~-~~a~~~l~~a~~ 225 (594)
+-++..+...+++++|+..+..++..--+ + .-+-.|++.++..+|++++|+..++.... +.. ..+....+.+.-
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill 170 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHH
Confidence 45677788899999999999988854332 2 44678899999999999999999886532 222 334566677777
Q ss_pred HhhhccCCCCCccchH
Q 007653 226 ILMKEDGHHGPRGLLI 241 (594)
Q Consensus 226 ~l~~~~~a~~~~~~~i 241 (594)
.+++..+++.++++.+
T Consensus 171 ~kg~k~~Ar~ay~kAl 186 (207)
T COG2976 171 AKGDKQEARAAYEKAL 186 (207)
T ss_pred HcCchHHHHHHHHHHH
Confidence 7777666666665544
No 355
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=33.63 E-value=89 Score=38.48 Aligned_cols=21 Identities=24% Similarity=0.446 Sum_probs=14.4
Q ss_pred ccchhhhhhHHHHhhhccccc
Q 007653 187 GQAYKDIGRLEEAVSDLSNAH 207 (594)
Q Consensus 187 g~al~~lg~~~eAi~~lekAl 207 (594)
+.+|...|+.++|++.|+.+.
T Consensus 959 al~Ye~~GklekAl~a~~~~~ 979 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALKAYKECG 979 (1265)
T ss_pred HHHHHHhccHHHHHHHHHHhc
Confidence 556667777777777776554
No 356
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=33.16 E-value=75 Score=25.15 Aligned_cols=54 Identities=19% Similarity=0.372 Sum_probs=43.6
Q ss_pred HHHhcCcHHHHHHHHHHhhcCCHHHHhhhhhhhccccchhhHHHHHHhhhcccccchhhH
Q 007653 484 MRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRM 543 (594)
Q Consensus 484 m~~~m~~p~m~~m~~~mmk~m~p~~~~~m~~~~g~~~~~~~a~~~~~~~~~~~~~~l~~~ 543 (594)
+..+-+||.+++-... --+|+.+-.+....|...|.++-.++ -..||++.|+..
T Consensus 8 l~~~~~d~~L~~~l~~---~~~~e~~~~lA~~~Gf~ft~~el~~~---~~elsd~eL~~v 61 (64)
T TIGR03798 8 LEKVKTDPDLREKLKA---AEDPEDRVAIAKEAGFEFTGEDLKEA---GEELSDEELEAV 61 (64)
T ss_pred HHHHHcCHHHHHHHHH---cCCHHHHHHHHHHcCCCCCHHHHHHH---HhhCCHHHHHhh
Confidence 4556789999864444 46799999999999999999998874 668999888753
No 357
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=32.94 E-value=23 Score=38.96 Aligned_cols=124 Identities=23% Similarity=0.268 Sum_probs=81.1
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCc----------------eeee----ccccc
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM----------------SCYL----KTKQY 162 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a----------------~~~~----klg~y 162 (594)
....+.-|...+..++|.+++.++.++|+..-.....+ +.|+.+.. .||. ..=+.
T Consensus 31 ~~~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~-----~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~ 105 (471)
T KOG4459|consen 31 HELAYSHGLESYEEENWPEAVRFLERALRLFRALRDSE-----AFCRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLER 105 (471)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhH-----HHHHhhccCcccCCCchhcccccchhHHHHHHHHHHH
Confidence 45677888889999999999999999988643322100 01222221 0110 01122
Q ss_pred hhhhhhcceeeeecccc----------hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653 163 DECIKVGSEVLAYDAKN----------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 231 (594)
Q Consensus 163 ~eAi~~~~~AL~ldP~~----------~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~ 231 (594)
..++.-|...+.-.|.. ...|.++-.||++.|++..|++.....+--+|++..+...+..-+..++...
T Consensus 106 a~Cl~rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~s~ 184 (471)
T KOG4459|consen 106 AACLRRCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGVSE 184 (471)
T ss_pred HHHHHHHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccCCCc
Confidence 33444444444333332 3577888999999999999999999999999999999888887765555443
No 358
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=32.45 E-value=19 Score=30.24 Aligned_cols=50 Identities=12% Similarity=0.032 Sum_probs=36.0
Q ss_pred eeccccchhhhhhcceeeeecccchH---HHHHhccchhhhhhHHHHhhhccc
Q 007653 156 YLKTKQYDECIKVGSEVLAYDAKNVK---ALYRRGQAYKDIGRLEEAVSDLSN 205 (594)
Q Consensus 156 ~~klg~y~eAi~~~~~AL~ldP~~~k---a~~~rg~al~~lg~~~eAi~~lek 205 (594)
++...+..+|+...+++|+..++... ++-.+..||...|+|.+.+++.-+
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888887666554 444456778888999888876543
No 359
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=32.11 E-value=27 Score=22.38 Aligned_cols=29 Identities=21% Similarity=0.125 Sum_probs=19.9
Q ss_pred hhHHHHhhhcccccccCCCCChHHHHHhH
Q 007653 194 GRLEEAVSDLSNAHEVSPDDGTIADVLRD 222 (594)
Q Consensus 194 g~~~eAi~~lekAl~l~P~~~~a~~~l~~ 222 (594)
|.++.|...|++++...|.+..++..+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 34667777777777777777776665544
No 360
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=31.97 E-value=22 Score=35.72 Aligned_cols=67 Identities=19% Similarity=0.196 Sum_probs=57.4
Q ss_pred eeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007653 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 222 (594)
Q Consensus 156 ~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~ 222 (594)
+++-+...++|.....-++-+|.+....+.+=..|+-.|+|++|..-++-+..++|++..-...+..
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~ 77 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRH 77 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHH
Confidence 4556778899999999999999999999999999999999999999999999999998654444443
No 361
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=31.63 E-value=10 Score=43.29 Aligned_cols=90 Identities=14% Similarity=0.029 Sum_probs=65.9
Q ss_pred cccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecc--cchH---HHHHhcc
Q 007653 114 YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA--KNVK---ALYRRGQ 188 (594)
Q Consensus 114 ~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP--~~~k---a~~~rg~ 188 (594)
-..|=++.....|.+.|++.-..|. ...|.|..+-...-|+++.+.|++.|.|-+ .-.+ .|.....
T Consensus 488 Es~gtfestk~vYdriidLriaTPq---------ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 488 ESLGTFESTKAVYDRIIDLRIATPQ---------IIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI 558 (835)
T ss_pred HHhccHHHHHHHHHHHHHHhcCCHH---------HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence 3445566677778888887655543 567899999899999999999999999864 2222 3333344
Q ss_pred chhhhhhHHHHhhhcccccccCCC
Q 007653 189 AYKDIGRLEEAVSDLSNAHEVSPD 212 (594)
Q Consensus 189 al~~lg~~~eAi~~lekAl~l~P~ 212 (594)
.-+.--+.+.|...|++||+..|.
T Consensus 559 ~rygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 559 KRYGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred HHhcCCCHHHHHHHHHHHHhcCCH
Confidence 444455789999999999999984
No 362
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=31.52 E-value=24 Score=39.19 Aligned_cols=95 Identities=17% Similarity=0.100 Sum_probs=68.4
Q ss_pred ccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhh
Q 007653 113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD 192 (594)
Q Consensus 113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~ 192 (594)
....|+...|-.....+|+..|.+|. ...-++.++-.+|.|+.+..++.-+-.+--.-.++.--+-..+..
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~---------~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~ 369 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPV---------LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHG 369 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCch---------hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhc
Confidence 34567777777778888888888764 334466777889999999988877665555556666666677888
Q ss_pred hhhHHHHhhhcccccccCCCCChH
Q 007653 193 IGRLEEAVSDLSNAHEVSPDDGTI 216 (594)
Q Consensus 193 lg~~~eAi~~lekAl~l~P~~~~a 216 (594)
+|+|++|....+-.+.-+-+++++
T Consensus 370 l~r~~~a~s~a~~~l~~eie~~ei 393 (831)
T PRK15180 370 LARWREALSTAEMMLSNEIEDEEV 393 (831)
T ss_pred hhhHHHHHHHHHHHhccccCChhh
Confidence 999999988877766554444443
No 363
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=31.09 E-value=40 Score=35.32 Aligned_cols=59 Identities=14% Similarity=0.113 Sum_probs=52.5
Q ss_pred ecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccc
Q 007653 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA 206 (594)
Q Consensus 148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekA 206 (594)
+..-.+..|...|.|.+|++.+++++.+||-+-..+.-+-..|..+|+--++++.|++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34445778889999999999999999999999999999999999999999999888754
No 364
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=30.81 E-value=31 Score=28.44 Aligned_cols=31 Identities=26% Similarity=0.127 Sum_probs=25.4
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhc
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (594)
.+..+..+|...=..|+|++|+.+|..+|++
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3556777778888889999999999999875
No 365
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=30.61 E-value=19 Score=35.62 Aligned_cols=62 Identities=16% Similarity=0.068 Sum_probs=42.3
Q ss_pred ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhh
Q 007653 98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 165 (594)
Q Consensus 98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eA 165 (594)
...+.++....+|..|. ..+..+++..|.++|++...... +....+..++.+|+++++|+.|
T Consensus 136 ~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~-----~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 136 PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDN-----FNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHHHhcchhhh
Confidence 45677888888887666 57889999999999998766521 1233455556666666665554
No 366
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=30.58 E-value=31 Score=28.04 Aligned_cols=30 Identities=27% Similarity=0.271 Sum_probs=22.8
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhc
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (594)
+..+...|..+=..|+|++|+.+|.++++.
T Consensus 8 A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 8 AKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445566666677788999999999888874
No 367
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=30.47 E-value=20 Score=38.83 Aligned_cols=83 Identities=20% Similarity=0.174 Sum_probs=67.9
Q ss_pred ecccCceeeeccccchhhhhhcceeeee----cccchHHHHHhccchhh---hhhHHHHhhhccc-ccccCCCCChHHHH
Q 007653 148 CSLNSMSCYLKTKQYDECIKVGSEVLAY----DAKNVKALYRRGQAYKD---IGRLEEAVSDLSN-AHEVSPDDGTIADV 219 (594)
Q Consensus 148 ~~~N~a~~~~klg~y~eAi~~~~~AL~l----dP~~~ka~~~rg~al~~---lg~~~eAi~~lek-Al~l~P~~~~a~~~ 219 (594)
...|+-.+|+..++|+.-|+..+..-.+ -++.....+.+|.|+.+ -|+.++|+..+.. ...-.+.+++.+..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 5568888999999999999988876655 45567777888999988 9999999999999 55556677899999
Q ss_pred HhHHHHHhhhc
Q 007653 220 LRDAKEILMKE 230 (594)
Q Consensus 220 l~~a~~~l~~~ 230 (594)
++.+.+.+-..
T Consensus 223 ~GRIyKD~~~~ 233 (374)
T PF13281_consen 223 LGRIYKDLFLE 233 (374)
T ss_pred HHHHHHHHHHH
Confidence 99998887554
No 368
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=30.32 E-value=17 Score=41.95 Aligned_cols=81 Identities=12% Similarity=0.264 Sum_probs=54.8
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchH
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 181 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k 181 (594)
.-.++++.|..+.....|.+|.++|.+.-. .-|...||+++..|.+-..+.... |++.+
T Consensus 795 ~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----------------~e~~~ecly~le~f~~LE~la~~L----pe~s~ 853 (1189)
T KOG2041|consen 795 KEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----------------TENQIECLYRLELFGELEVLARTL----PEDSE 853 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------------hHhHHHHHHHHHhhhhHHHHHHhc----Ccccc
Confidence 346788888888899999999999987632 257788999999888866655443 44444
Q ss_pred HHHHhccchhhhhhHHHHhhhc
Q 007653 182 ALYRRGQAYKDIGRLEEAVSDL 203 (594)
Q Consensus 182 a~~~rg~al~~lg~~~eAi~~l 203 (594)
.+-.+|..+...|--++|++.|
T Consensus 854 llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 854 LLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred hHHHHHHHHHhhchHHHHHHHH
Confidence 4444555555555555555444
No 369
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=30.00 E-value=33 Score=27.87 Aligned_cols=30 Identities=33% Similarity=0.330 Sum_probs=22.8
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhc
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (594)
+..+...|...=..|+|++|+.+|..+++.
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344556666677779999999999998874
No 370
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=29.98 E-value=67 Score=38.17 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=16.8
Q ss_pred hHHHHHhccchhhhhhHHHHhhhcccc
Q 007653 180 VKALYRRGQAYKDIGRLEEAVSDLSNA 206 (594)
Q Consensus 180 ~ka~~~rg~al~~lg~~~eAi~~lekA 206 (594)
.+.|.+-|.-+-..|+.+.|+.+|+.|
T Consensus 912 ~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 912 ESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 344555566666667777777766655
No 371
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=29.53 E-value=24 Score=38.38 Aligned_cols=108 Identities=12% Similarity=-0.035 Sum_probs=76.5
Q ss_pred cccccch-hHHHHHHHhhhccccccccccceeeeeecccCceee------------eccccchhhhhhcceeeeecccch
Q 007653 114 YSEGRFS-NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY------------LKTKQYDECIKVGSEVLAYDAKNV 180 (594)
Q Consensus 114 ~~~g~y~-eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~------------~klg~y~eAi~~~~~AL~ldP~~~ 180 (594)
.+.|.|+ +++.+=.+.+..+|... .+|+-+-.++ .+..-.++-+.....+|+.+|+..
T Consensus 39 r~~~~yd~e~l~lt~~ll~~npe~~---------t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY 109 (421)
T KOG0529|consen 39 REAKEYDEEHLELTSELLEKNPEFY---------TVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSY 109 (421)
T ss_pred HhccccchHHHHHHHHHHhhCchhh---------hhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhH
Confidence 3444443 46666666666666652 2333332222 222345666777788899999999
Q ss_pred HHHHHhccchhhhhh--HHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007653 181 KALYRRGQAYKDIGR--LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 230 (594)
Q Consensus 181 ka~~~rg~al~~lg~--~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~ 230 (594)
-+|+.|..++.+.+. +..-++.+++++++||.|-.+|...+.+.......
T Consensus 110 ~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 110 GAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS 161 (421)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence 999999999987654 68899999999999999999999888887666543
No 372
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=29.37 E-value=1.7e+02 Score=32.80 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=17.2
Q ss_pred HHHhcCcHHHHHHHHHHhhcCCHHHHhh
Q 007653 484 MRNQMNDPAMKQMFSSMVKNMSPEMMAN 511 (594)
Q Consensus 484 m~~~m~~p~m~~m~~~mmk~m~p~~~~~ 511 (594)
|.++.+ |.++.|+.++-.+ |...+.
T Consensus 347 ~~~l~s-~~~~~m~~~~s~~--P~~a~~ 371 (493)
T KOG0010|consen 347 LQQLLS-PYIRSMFQSASQN--PLQAAQ 371 (493)
T ss_pred hhhccc-hhhHHHHhhhccC--chhhhc
Confidence 455555 7888888888777 666555
No 373
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=29.06 E-value=3.2e+02 Score=32.56 Aligned_cols=16 Identities=13% Similarity=0.221 Sum_probs=8.1
Q ss_pred cccchhHHHHHHHhhh
Q 007653 116 EGRFSNALQKYLLAKK 131 (594)
Q Consensus 116 ~g~y~eAi~~Y~kAL~ 131 (594)
++.|+++-.+|.-...
T Consensus 378 r~emDd~~~~f~lL~n 393 (1102)
T KOG1924|consen 378 RAEMDDANEVFELLAN 393 (1102)
T ss_pred hhhhccHHHHHHHHHH
Confidence 3445555555554443
No 374
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=29.03 E-value=28 Score=36.21 Aligned_cols=62 Identities=19% Similarity=0.147 Sum_probs=52.2
Q ss_pred cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccc
Q 007653 178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGL 239 (594)
Q Consensus 178 ~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~ 239 (594)
.+.++|.-++.++...|+++.++..+++.+.++|.+..++..+-.+..+-+.+..+...++.
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~ 212 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQ 212 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 45778888999999999999999999999999999999999998887777666555444443
No 375
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=28.87 E-value=11 Score=46.30 Aligned_cols=111 Identities=10% Similarity=-0.027 Sum_probs=83.3
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee---
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--- 175 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l--- 175 (594)
.++.+..+..++..+++.+++++|+..-.++.-+....-. ....-....|.|++...+..+....|+..+.+++.+
T Consensus 969 h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g-~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen 969 HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG-KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc-CCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence 5677888999999999999999999997776654433211 001111346788888888888888888887777654
Q ss_pred -----cccchHHHHHhccchhhhhhHHHHhhhcccccccC
Q 007653 176 -----DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 210 (594)
Q Consensus 176 -----dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~ 210 (594)
.|.-+....+++..+..+++++-|+.+++.|+++.
T Consensus 1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 45556667788899999999999999999998854
No 376
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=28.70 E-value=31 Score=36.10 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=49.6
Q ss_pred cCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccc
Q 007653 151 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA 206 (594)
Q Consensus 151 N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekA 206 (594)
--+.-....+++.+|...+..++..+|++.++...++.||...|+.++|...|...
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 34455677899999999999999999999999999999999999999998887654
No 377
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.44 E-value=33 Score=40.52 Aligned_cols=50 Identities=10% Similarity=0.054 Sum_probs=36.1
Q ss_pred HHHhcCcHHHHHHHHHHhhcCCHHHHhhhhhhhccccchhhHHHHHHhhhc
Q 007653 484 MRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSS 534 (594)
Q Consensus 484 m~~~m~~p~m~~m~~~mmk~m~p~~~~~m~~~~g~~~~~~~a~~~~~~~~~ 534 (594)
.-..+++-.-++.+...|++=+||..-.+.+..|-- +|+....|-+=+.+
T Consensus 699 ly~~~k~k~~~dl~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~ 748 (933)
T KOG2114|consen 699 LYSYEKLKEGQDLMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVS 748 (933)
T ss_pred HHHHhhccchHHHHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhh
Confidence 445667777778888899999999999999988765 55555554444433
No 378
>PF11212 DUF2999: Protein of unknown function (DUF2999); InterPro: IPR021376 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=28.15 E-value=1.2e+02 Score=25.00 Aligned_cols=27 Identities=26% Similarity=0.578 Sum_probs=22.4
Q ss_pred CCcchHHHHHHHHhcChhHHHHhhhhh
Q 007653 21 MSPDDFARIQQQMMANPELMRIATENM 47 (594)
Q Consensus 21 m~p~~l~r~~~~m~~~p~l~r~A~e~m 47 (594)
++|+-|..+..+.+.||.++++|++-+
T Consensus 41 ip~eKLQ~lm~~VMqnP~LikeAv~EL 67 (82)
T PF11212_consen 41 IPQEKLQQLMAQVMQNPALIKEAVEEL 67 (82)
T ss_pred CCHHHHHHHHHHHhcChHHHHHHHHHh
Confidence 588888888888888999999988854
No 379
>PF07023 DUF1315: Protein of unknown function (DUF1315); InterPro: IPR009749 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=26.96 E-value=70 Score=27.67 Aligned_cols=34 Identities=24% Similarity=0.479 Sum_probs=28.9
Q ss_pred HHHhhcCCHHHHhhhhhhh-------ccccchhhHHHHHHh
Q 007653 498 SSMVKNMSPEMMANMSEQF-------GIKLSREDTEKFQQT 531 (594)
Q Consensus 498 ~~mmk~m~p~~~~~m~~~~-------g~~~~~~~a~~~~~~ 531 (594)
..|+.+|+||--.++-..- |..||+||=+...|+
T Consensus 2 ~~li~~mtPevY~rL~~AVElGKWpDG~~LT~eQre~~mQa 42 (93)
T PF07023_consen 2 EQLIDSMTPEVYERLKQAVELGKWPDGRALTPEQRESCMQA 42 (93)
T ss_pred hHHHHhCCHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHH
Confidence 4689999999999998877 899999998876554
No 380
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=26.58 E-value=1.7e+02 Score=33.94 Aligned_cols=84 Identities=15% Similarity=0.101 Sum_probs=51.3
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHH
Q 007653 105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY 184 (594)
Q Consensus 105 ~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~ 184 (594)
.++..+..+.+...+.-|.+.|.+.-. ...+-..|...++|.+|....++--++- ...|+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD-----------------~ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~ 808 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD-----------------LKSLVQLHVETQRWDEAFALAEKHPEFK---DDVYM 808 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc-----------------HHHHhhheeecccchHhHhhhhhCcccc---ccccc
Confidence 344444444555556666666665422 1234455677778888777766643332 34667
Q ss_pred HhccchhhhhhHHHHhhhcccccc
Q 007653 185 RRGQAYKDIGRLEEAVSDLSNAHE 208 (594)
Q Consensus 185 ~rg~al~~lg~~~eAi~~lekAl~ 208 (594)
..|.-+.+..+|+||.+.|.+|-+
T Consensus 809 pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 809 PYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred hHHHHhhhhhhHHHHHHHHHHhcc
Confidence 777777777788888877777754
No 381
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=26.37 E-value=1.4e+02 Score=27.91 Aligned_cols=13 Identities=46% Similarity=0.687 Sum_probs=10.6
Q ss_pred cCCcchHHHHHHH
Q 007653 20 RMSPDDFARIQQQ 32 (594)
Q Consensus 20 ~m~p~~l~r~~~~ 32 (594)
.|+|+++.+++.+
T Consensus 29 tysp~~l~~i~~~ 41 (142)
T TIGR03042 29 TYSPAQLAQIQRQ 41 (142)
T ss_pred CCCHHHHHHHHHH
Confidence 5789999998874
No 382
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=25.78 E-value=18 Score=32.35 Aligned_cols=63 Identities=16% Similarity=0.255 Sum_probs=48.7
Q ss_pred Cceeeeccccchhhhhhcceeeeecccch---HHHHHhccchhhhhh-----------HHHHhhhcccccccCCCCC
Q 007653 152 SMSCYLKTKQYDECIKVGSEVLAYDAKNV---KALYRRGQAYKDIGR-----------LEEAVSDLSNAHEVSPDDG 214 (594)
Q Consensus 152 ~a~~~~klg~y~eAi~~~~~AL~ldP~~~---ka~~~rg~al~~lg~-----------~~eAi~~lekAl~l~P~~~ 214 (594)
++.-+++.|++-+|++..+..|..++++. -.++.-|..+..+.. +-.+++.|.++..+.|...
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A 78 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSA 78 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHH
Confidence 34557788999999999999998887766 556667877766543 3458999999999999873
No 383
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.03 E-value=2.7e+02 Score=27.34 Aligned_cols=101 Identities=12% Similarity=-0.011 Sum_probs=71.3
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhccee-eeecccchH
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEV-LAYDAKNVK 181 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~A-L~ldP~~~k 181 (594)
.-+....+.++...|+...|+..|.++-...+- |. ..+-.+.+.-+.++...|-|+....-.+.. -.-+|-...
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~----~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~s 168 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQ----IGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHS 168 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cc----hhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHH
Confidence 445677788889999999999999997654332 21 011224455666777888898877665543 233454555
Q ss_pred HHHHhccchhhhhhHHHHhhhcccccc
Q 007653 182 ALYRRGQAYKDIGRLEEAVSDLSNAHE 208 (594)
Q Consensus 182 a~~~rg~al~~lg~~~eAi~~lekAl~ 208 (594)
+.--+|.+-++.|+|..|..+|.....
T Consensus 169 ArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 169 AREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 666788899999999999999998765
No 384
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=24.88 E-value=56 Score=38.19 Aligned_cols=59 Identities=8% Similarity=0.121 Sum_probs=34.5
Q ss_pred ecccCceeeeccccchhhhhhcceeeee------------------------cccc-hHHHHHhccchhhhhhHHHHhhh
Q 007653 148 CSLNSMSCYLKTKQYDECIKVGSEVLAY------------------------DAKN-VKALYRRGQAYKDIGRLEEAVSD 202 (594)
Q Consensus 148 ~~~N~a~~~~klg~y~eAi~~~~~AL~l------------------------dP~~-~ka~~~rg~al~~lg~~~eAi~~ 202 (594)
.|--++.-|...|+|+-|.+.|.++=.. .|.. ...|...+.-+-..|+|.+|...
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeql 846 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQL 846 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhhe
Confidence 4455566666667777666666554211 1211 22344556666778888888887
Q ss_pred cccc
Q 007653 203 LSNA 206 (594)
Q Consensus 203 lekA 206 (594)
|-..
T Consensus 847 yiti 850 (1636)
T KOG3616|consen 847 YITI 850 (1636)
T ss_pred eEEc
Confidence 7544
No 385
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=24.60 E-value=12 Score=34.78 Aligned_cols=49 Identities=18% Similarity=0.223 Sum_probs=38.6
Q ss_pred ccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHH
Q 007653 150 LNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEE 198 (594)
Q Consensus 150 ~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~e 198 (594)
+.++..++..|+|.-|++.++.++..+|+|..+...++.+|..+|.-.+
T Consensus 74 l~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 74 LERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 3455556678999999999999999999999999999999999987544
No 386
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=24.43 E-value=22 Score=39.25 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=50.2
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhccee
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEV 172 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~A 172 (594)
.......+..+|.+|+|.++..+-.-..++.| .+ .+|.-+|.|++..++|.+|..++...
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~---------~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SP---------QAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cH---------HHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 44566667778999999999999999999988 43 37888999999999999999988654
No 387
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=23.88 E-value=19 Score=41.55 Aligned_cols=122 Identities=12% Similarity=0.074 Sum_probs=82.5
Q ss_pred HHHHHHHhccccc-ccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc--
Q 007653 102 AAKMLKKQGNELY-SEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK-- 178 (594)
Q Consensus 102 ~a~~l~~~Gn~~~-~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~-- 178 (594)
.+...+.+|.+++ ...++++|..+..+++.+.... ...++...+.+-++.+|.+.+... |+..+++.|+.--.
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~---~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~ 133 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERH---RLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYG 133 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc---chHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccC
Confidence 5677888898887 7789999999999998877552 122333445555678888877766 88888888866444
Q ss_pred --chHHHHHhccc-hh-hhhhHHHHhhhcccccccC--CCCChHHHHHhHHHHHh
Q 007653 179 --NVKALYRRGQA-YK-DIGRLEEAVSDLSNAHEVS--PDDGTIADVLRDAKEIL 227 (594)
Q Consensus 179 --~~ka~~~rg~a-l~-~lg~~~eAi~~lekAl~l~--P~~~~a~~~l~~a~~~l 227 (594)
.+..+|++-.+ +. ..+++..|+..++....+. ..++.+.-.+...+..+
T Consensus 134 ~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l 188 (608)
T PF10345_consen 134 HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALL 188 (608)
T ss_pred chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Confidence 45555555423 22 2268999999999887776 35555544444444444
No 388
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=23.69 E-value=48 Score=40.30 Aligned_cols=89 Identities=19% Similarity=0.157 Sum_probs=61.4
Q ss_pred cccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH-------HHHhcc
Q 007653 116 EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA-------LYRRGQ 188 (594)
Q Consensus 116 ~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka-------~~~rg~ 188 (594)
...|.+|+..|++.-. -+.-|. -|+-.|.+|.++++|+|-+++|.-|++.-|.++.. .||+-.
T Consensus 532 ~~~~~~~~~~~~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (932)
T PRK13184 532 PRDFTQALSEFSYLHG-GVGAPL---------EYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHE 601 (932)
T ss_pred hHHHHHHHHHHHHhcC-CCCCch---------HHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 3567888888877433 333332 48889999999999999999999999998888764 344444
Q ss_pred chhhhhhHHHHhhhcccccccCCCCChH
Q 007653 189 AYKDIGRLEEAVSDLSNAHEVSPDDGTI 216 (594)
Q Consensus 189 al~~lg~~~eAi~~lekAl~l~P~~~~a 216 (594)
+++.. ...|....--++.+.|.....
T Consensus 602 ~~~~~--~~~~~~~~~~~~~~~~~~~~~ 627 (932)
T PRK13184 602 SLYKH--RREALVFMLLALWIAPEKISS 627 (932)
T ss_pred HHHHH--HHHHHHHHHHHHHhCcccccc
Confidence 44332 344555555667777875443
No 389
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=23.66 E-value=46 Score=27.47 Aligned_cols=30 Identities=23% Similarity=0.201 Sum_probs=23.4
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhc
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (594)
+..+..++...-..|+|.+|..+|..+|++
T Consensus 6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 6 AAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 445666666777779999999999999875
No 390
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=23.49 E-value=27 Score=39.81 Aligned_cols=102 Identities=15% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhh--hccccccccccceeeeeecccCceeeeccccchhhhhhcce--eeeecc
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAK--KNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE--VLAYDA 177 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL--~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~--AL~ldP 177 (594)
....+..-+..++..|++..|...+.+.- .+.+.. .....+-.+.+.+..+++.+|+..+.. ...+.+
T Consensus 23 ~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q--------~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~ 94 (536)
T PF04348_consen 23 RAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQ--------QARYQLLRARLALAQGDPEQALSLLNAQDLWQLPP 94 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHH--------HHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCH
Confidence 34556666777888999999998887654 222222 233556778888899999999998874 122222
Q ss_pred -cchHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007653 178 -KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 211 (594)
Q Consensus 178 -~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P 211 (594)
....+|..++.+|...|++-+|+..+-..-.+-+
T Consensus 95 ~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~lL~ 129 (536)
T PF04348_consen 95 EQQARYHQLRAQAYEQQGDPLAAARERIALDPLLP 129 (536)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcC
Confidence 2345666678899999999888887665554443
No 391
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=22.96 E-value=61 Score=26.92 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=12.5
Q ss_pred HHHHhhhcccccccCCCCChHHH
Q 007653 196 LEEAVSDLSNAHEVSPDDGTIAD 218 (594)
Q Consensus 196 ~~eAi~~lekAl~l~P~~~~a~~ 218 (594)
|.+|++.|.+++...|+++.-..
T Consensus 29 Y~~aIe~L~q~~~~~pD~~~k~~ 51 (75)
T cd02682 29 YKKAIEVLSQIVKNYPDSPTRLI 51 (75)
T ss_pred HHHHHHHHHHHHHhCCChHHHHH
Confidence 34444445555666777765333
No 392
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=22.92 E-value=46 Score=36.31 Aligned_cols=64 Identities=22% Similarity=0.221 Sum_probs=52.5
Q ss_pred cCceeeeccccchhhhhhcceee----eecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007653 151 NSMSCYLKTKQYDECIKVGSEVL----AYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214 (594)
Q Consensus 151 N~a~~~~klg~y~eAi~~~~~AL----~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~ 214 (594)
.+=.+|+.-+.|+.|-....++. .-+..++.++|.+|.+..-.++|..|.+++-.|+...|.+.
T Consensus 214 ~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 214 LLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 34556777788999888777664 22336789999999999999999999999999999999854
No 393
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=22.31 E-value=14 Score=35.59 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=50.9
Q ss_pred ecccCceeeeccccchhhhhhcceeeeeccc---chHHHHHhccchhhhhhHHHHhhhcccccccC
Q 007653 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAK---NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 210 (594)
Q Consensus 148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~---~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~ 210 (594)
++..+|..|.+.|++++|++.|.++...... -.+.+++.-.+....++|.....++.++-.+-
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 5678888999999999999999998766432 35677778888888899999988888886653
No 394
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=22.19 E-value=28 Score=37.01 Aligned_cols=51 Identities=10% Similarity=0.056 Sum_probs=26.9
Q ss_pred cccCceeeeccccchhhhhhcceeeeeccc--chHHHHHhccchhhhhhHHHH
Q 007653 149 SLNSMSCYLKTKQYDECIKVGSEVLAYDAK--NVKALYRRGQAYKDIGRLEEA 199 (594)
Q Consensus 149 ~~N~a~~~~klg~y~eAi~~~~~AL~ldP~--~~ka~~~rg~al~~lg~~~eA 199 (594)
-..++.|.+++|+..+|++.++...+--|- -...+-|+-.++.++.-|.+.
T Consensus 278 KRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADv 330 (556)
T KOG3807|consen 278 KRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADV 330 (556)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777666655444331 122344444455554444443
No 395
>PF12854 PPR_1: PPR repeat
Probab=21.47 E-value=56 Score=22.27 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=21.8
Q ss_pred chHHHHHhccchhhhhhHHHHhhhccc
Q 007653 179 NVKALYRRGQAYKDIGRLEEAVSDLSN 205 (594)
Q Consensus 179 ~~ka~~~rg~al~~lg~~~eAi~~lek 205 (594)
+...|..+-.+|.+.|++++|++.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 456677788889999999999988764
No 396
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=20.86 E-value=24 Score=37.27 Aligned_cols=58 Identities=14% Similarity=-0.064 Sum_probs=39.9
Q ss_pred chhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHH
Q 007653 119 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR 185 (594)
Q Consensus 119 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~ 185 (594)
.+.-+..|++||+.+|.... +++-+-.++.+.-+-++..+.+++++..+|+++..|..
T Consensus 47 ~E~klsilerAL~~np~~~~---------L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~ 104 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSER---------LLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWRE 104 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence 45667789999999886643 22333333445556777788889999999988776544
No 397
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=20.81 E-value=80 Score=26.44 Aligned_cols=33 Identities=18% Similarity=0.056 Sum_probs=24.5
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccc
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ 134 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p 134 (594)
.+..+.++|..+=..|+.++|+.+|+++++...
T Consensus 7 ~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~ 39 (79)
T cd02679 7 QAFEEISKALRADEWGDKEQALAHYRKGLRELE 39 (79)
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHH
Confidence 355566777777777888889999988887543
No 398
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=20.52 E-value=38 Score=36.12 Aligned_cols=119 Identities=13% Similarity=0.195 Sum_probs=76.8
Q ss_pred HHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHh
Q 007653 107 KKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRR 186 (594)
Q Consensus 107 ~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~r 186 (594)
..-|..+...++|..|-.+|-+|++-....... ...+...=|.-++.+.+.+-+--.++-....+++++.....+..-.
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEgf~s~~~~-v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amkav 291 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDD-VKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAV 291 (411)
T ss_pred HhccceeecccccchHHHHHHHHHccccccCCc-HHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHH
Confidence 345667788899999999999998854433210 0011111122333333333344444555566777788888888888
Q ss_pred ccchh--hhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 187 GQAYK--DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 187 g~al~--~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
+.++. .+.+|+.|+.+|+.-+.-|| .++..+..+...+-+
T Consensus 292 AeA~~nRSLkdF~~AL~~yk~eL~~D~---ivr~Hl~~Lyd~lLE 333 (411)
T KOG1463|consen 292 AEAFGNRSLKDFEKALADYKKELAEDP---IVRSHLQSLYDNLLE 333 (411)
T ss_pred HHHhcCCcHHHHHHHHHHhHHHHhcCh---HHHHHHHHHHHHHHH
Confidence 88884 68999999999998887554 566666666555543
No 399
>PRK11619 lytic murein transglycosylase; Provisional
Probab=20.32 E-value=2.4e+02 Score=32.99 Aligned_cols=53 Identities=15% Similarity=0.004 Sum_probs=40.1
Q ss_pred eeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccc
Q 007653 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE 208 (594)
Q Consensus 156 ~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~ 208 (594)
.++.++++.+...+...-.-.-.....+|.+|.++..+|+.++|...|+++..
T Consensus 322 Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 322 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 34677777766666554332335678999999999999999999999999854
Done!