Query 007653
Match_columns 594
No_of_seqs 463 out of 2630
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 07:10:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gco_A Protein STI-1; structur 99.7 1E-19 3.6E-24 163.1 -0.3 117 98-223 8-124 (126)
2 2hr2_A Hypothetical protein; a 99.7 5.5E-19 1.9E-23 165.7 -4.2 127 102-230 10-152 (159)
3 3rkv_A Putative peptidylprolyl 99.7 4.9E-18 1.7E-22 156.9 -0.8 135 99-233 7-151 (162)
4 4ga2_A E3 SUMO-protein ligase 99.6 2.1E-17 7.1E-22 152.1 -1.8 138 81-227 9-147 (150)
5 2pl2_A Hypothetical conserved 99.6 4E-17 1.4E-21 159.0 -0.7 190 39-238 8-209 (217)
6 3gyz_A Chaperone protein IPGC; 99.6 6.4E-17 2.2E-21 150.4 -0.2 116 90-214 23-138 (151)
7 3upv_A Heat shock protein STI1 99.6 5.5E-17 1.9E-21 143.0 -1.2 118 101-227 2-125 (126)
8 4gcn_A Protein STI-1; structur 99.6 8.6E-17 2.9E-21 143.9 -0.9 114 100-223 5-125 (127)
9 2vgx_A Chaperone SYCD; alterna 99.6 2E-16 6.9E-21 145.4 0.0 131 92-231 10-140 (148)
10 4gyw_A UDP-N-acetylglucosamine 99.6 2.1E-16 7.1E-21 181.8 -0.8 155 83-246 23-177 (723)
11 3sz7_A HSC70 cochaperone (SGT) 99.6 2.8E-16 9.5E-21 145.3 -0.1 122 99-229 7-130 (164)
12 2xcb_A PCRH, regulatory protei 99.5 3.2E-16 1.1E-20 141.9 -0.7 129 92-229 7-135 (142)
13 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 9.2E-16 3.1E-20 167.0 -0.6 140 92-231 257-402 (457)
14 1p5q_A FKBP52, FK506-binding p 99.5 5.3E-16 1.8E-20 162.0 -2.9 155 89-243 133-294 (336)
15 2fbn_A 70 kDa peptidylprolyl i 99.5 1.3E-15 4.5E-20 145.2 -0.8 137 97-233 32-175 (198)
16 4i17_A Hypothetical protein; T 99.5 2.2E-15 7.7E-20 145.9 -0.2 190 36-227 6-227 (228)
17 4gyw_A UDP-N-acetylglucosamine 99.5 1.5E-15 5E-20 174.7 -2.6 134 99-241 5-138 (723)
18 2if4_A ATFKBP42; FKBP-like, al 99.5 2.8E-15 9.4E-20 156.8 -0.7 132 98-229 174-313 (338)
19 2pl2_A Hypothetical conserved 99.5 1.8E-15 6.2E-20 147.2 -2.9 148 84-241 20-178 (217)
20 2h6f_A Protein farnesyltransfe 99.5 3.2E-15 1.1E-19 159.5 -1.8 156 64-228 91-248 (382)
21 4ga2_A E3 SUMO-protein ligase 99.4 3.9E-15 1.3E-19 136.8 -1.5 116 108-232 2-117 (150)
22 3q49_B STIP1 homology and U bo 99.4 4.1E-15 1.4E-19 131.7 -2.2 122 99-229 5-131 (137)
23 2h6f_A Protein farnesyltransfe 99.4 5.5E-15 1.9E-19 157.7 -2.8 139 94-241 88-227 (382)
24 3vtx_A MAMA; tetratricopeptide 99.4 5.5E-15 1.9E-19 138.1 -3.8 148 85-241 21-168 (184)
25 2lni_A Stress-induced-phosphop 99.4 2.3E-14 7.9E-19 125.0 0.4 121 99-228 12-132 (133)
26 1ihg_A Cyclophilin 40; ppiase 99.4 1.5E-14 5.3E-19 153.4 -1.1 133 99-231 219-358 (370)
27 3vtx_A MAMA; tetratricopeptide 99.4 8.3E-15 2.8E-19 136.9 -3.0 167 39-214 8-175 (184)
28 2pzi_A Probable serine/threoni 99.4 2.7E-14 9.2E-19 163.1 0.2 170 47-226 402-580 (681)
29 3urz_A Uncharacterized protein 99.4 2.1E-14 7.1E-19 138.7 -0.9 117 103-228 4-136 (208)
30 1elw_A TPR1-domain of HOP; HOP 99.4 3.6E-14 1.2E-18 120.6 0.2 115 102-225 3-117 (118)
31 1hxi_A PEX5, peroxisome target 99.4 2.1E-14 7.1E-19 127.3 -1.6 102 105-215 19-120 (121)
32 4abn_A Tetratricopeptide repea 99.4 2.4E-14 8.2E-19 156.3 -1.8 181 43-233 109-311 (474)
33 3urz_A Uncharacterized protein 99.4 9.2E-14 3.2E-18 134.2 1.9 149 39-213 7-190 (208)
34 2vyi_A SGTA protein; chaperone 99.4 5.6E-14 1.9E-18 121.4 0.3 123 99-230 8-130 (131)
35 2dba_A Smooth muscle cell asso 99.4 5.1E-14 1.7E-18 125.3 -0.3 120 99-224 24-143 (148)
36 4i17_A Hypothetical protein; T 99.3 8.3E-14 2.8E-18 134.8 0.2 137 84-229 22-168 (228)
37 1elr_A TPR2A-domain of HOP; HO 99.3 1.2E-13 4E-18 119.6 -0.3 120 101-230 2-128 (131)
38 1zu2_A Mitochondrial import re 99.3 7E-14 2.4E-18 130.8 -1.9 106 113-227 12-138 (158)
39 4abn_A Tetratricopeptide repea 99.3 4.9E-14 1.7E-18 153.9 -3.6 170 61-240 93-284 (474)
40 3qky_A Outer membrane assembly 99.3 3.2E-13 1.1E-17 133.8 2.1 189 39-233 18-251 (261)
41 3u4t_A TPR repeat-containing p 99.3 1.1E-13 3.9E-18 136.2 -1.4 118 103-229 74-191 (272)
42 1w3b_A UDP-N-acetylglucosamine 99.3 4.1E-13 1.4E-17 140.1 2.1 177 47-232 180-357 (388)
43 1w3b_A UDP-N-acetylglucosamine 99.3 1.6E-13 5.6E-18 143.2 -1.0 142 84-234 150-291 (388)
44 2e2e_A Formate-dependent nitri 99.3 1.7E-13 5.9E-18 127.4 -0.7 132 85-225 26-160 (177)
45 4eqf_A PEX5-related protein; a 99.3 1.2E-13 4.2E-18 142.6 -2.1 201 39-239 68-272 (365)
46 4eqf_A PEX5-related protein; a 99.3 1E-13 3.4E-18 143.3 -3.1 192 43-241 106-308 (365)
47 1a17_A Serine/threonine protei 99.3 3.2E-13 1.1E-17 122.5 0.5 116 100-224 10-125 (166)
48 2q7f_A YRRB protein; TPR, prot 99.3 1.2E-13 4.1E-18 133.2 -2.7 190 39-237 26-216 (243)
49 2xev_A YBGF; tetratricopeptide 99.3 1.7E-13 5.8E-18 119.9 -1.5 116 105-226 4-122 (129)
50 1fch_A Peroxisomal targeting s 99.3 1.2E-13 4.1E-18 142.0 -3.1 150 84-242 196-358 (368)
51 1wao_1 Serine/threonine protei 99.3 3E-13 1E-17 148.1 -0.1 127 101-236 4-132 (477)
52 3hym_B Cell division cycle pro 99.3 1.2E-13 4.2E-18 138.9 -4.4 195 33-236 18-215 (330)
53 3cv0_A Peroxisome targeting si 99.3 2.4E-13 8.3E-18 136.5 -2.3 153 80-241 149-313 (327)
54 2pzi_A Probable serine/threoni 99.3 7.6E-14 2.6E-18 159.4 -7.0 142 82-233 404-553 (681)
55 3hym_B Cell division cycle pro 99.3 5.3E-13 1.8E-17 134.2 -0.0 143 85-227 175-317 (330)
56 3gyz_A Chaperone protein IPGC; 99.3 2.9E-14 9.9E-19 132.4 -8.8 109 124-241 23-131 (151)
57 2c2l_A CHIP, carboxy terminus 99.2 3.9E-13 1.3E-17 136.4 -1.5 103 102-213 3-105 (281)
58 3uq3_A Heat shock protein STI1 99.2 4.3E-13 1.5E-17 130.0 -1.3 116 98-222 134-255 (258)
59 3ieg_A DNAJ homolog subfamily 99.2 1.1E-12 3.7E-17 133.0 1.5 180 47-231 165-357 (359)
60 3k9i_A BH0479 protein; putativ 99.2 2.4E-13 8.2E-18 118.7 -3.2 101 115-224 2-105 (117)
61 2vsy_A XCC0866; transferase, g 99.2 3.1E-13 1.1E-17 149.9 -3.2 133 86-227 6-138 (568)
62 1na0_A Designed protein CTPR3; 99.2 8.9E-13 3.1E-17 112.8 0.2 116 103-227 9-124 (125)
63 3uq3_A Heat shock protein STI1 99.2 1.9E-13 6.5E-18 132.5 -5.0 157 85-241 54-234 (258)
64 2kck_A TPR repeat; tetratricop 99.2 4.4E-13 1.5E-17 112.9 -2.6 105 101-214 4-111 (112)
65 2q7f_A YRRB protein; TPR, prot 99.2 5.7E-13 2E-17 128.3 -2.2 175 43-226 64-239 (243)
66 3as5_A MAMA; tetratricopeptide 99.2 5.9E-13 2E-17 121.8 -2.1 143 85-236 24-166 (186)
67 2ho1_A Type 4 fimbrial biogene 99.2 7.3E-13 2.5E-17 129.0 -1.7 182 43-233 44-228 (252)
68 1fch_A Peroxisomal targeting s 99.2 8.9E-13 3.1E-17 135.4 -1.9 202 40-241 68-312 (368)
69 2l6j_A TPR repeat-containing p 99.2 8.6E-13 3E-17 112.0 -2.0 97 102-207 3-105 (111)
70 3qky_A Outer membrane assembly 99.2 6.4E-13 2.2E-17 131.6 -3.4 139 84-228 30-199 (261)
71 4gco_A Protein STI-1; structur 99.2 1.5E-12 5E-17 116.3 -0.8 120 62-190 5-125 (126)
72 3ieg_A DNAJ homolog subfamily 99.2 6.8E-13 2.3E-17 134.5 -3.4 186 39-233 6-207 (359)
73 2vq2_A PILW, putative fimbrial 99.2 1.7E-12 5.7E-17 123.0 -1.5 137 84-229 57-197 (225)
74 1hh8_A P67PHOX, NCF-2, neutrop 99.2 9.7E-13 3.3E-17 125.2 -3.2 119 103-233 6-140 (213)
75 1xnf_A Lipoprotein NLPI; TPR, 99.2 4.5E-12 1.5E-16 124.4 1.3 131 84-223 20-154 (275)
76 3qou_A Protein YBBN; thioredox 99.2 1.8E-12 6.1E-17 131.8 -1.7 142 83-233 131-274 (287)
77 3u4t_A TPR repeat-containing p 99.2 5.3E-12 1.8E-16 124.1 1.5 135 85-225 19-154 (272)
78 2y4t_A DNAJ homolog subfamily 99.1 5.4E-12 1.8E-16 133.4 1.4 180 47-231 188-380 (450)
79 2r5s_A Uncharacterized protein 99.1 2.1E-12 7E-17 120.8 -2.0 140 85-234 22-164 (176)
80 1hh8_A P67PHOX, NCF-2, neutrop 99.1 8.2E-12 2.8E-16 118.7 1.7 105 102-215 36-156 (213)
81 3mkr_A Coatomer subunit epsilo 99.1 9E-12 3.1E-16 127.2 2.0 120 100-230 127-250 (291)
82 3as5_A MAMA; tetratricopeptide 99.1 1.9E-12 6.5E-17 118.4 -2.9 163 46-217 18-181 (186)
83 3cv0_A Peroxisome targeting si 99.1 3.9E-12 1.3E-16 127.6 -1.2 186 39-233 24-225 (327)
84 2vq2_A PILW, putative fimbrial 99.1 2.7E-12 9.4E-17 121.6 -2.3 142 85-235 24-168 (225)
85 3mkr_A Coatomer subunit epsilo 99.1 6.7E-12 2.3E-16 128.1 0.4 128 84-220 145-275 (291)
86 2vgx_A Chaperone SYCD; alterna 99.1 8.4E-13 2.9E-17 121.1 -6.7 110 123-241 7-116 (148)
87 2ho1_A Type 4 fimbrial biogene 99.1 5.2E-12 1.8E-16 123.0 -1.8 139 85-232 53-193 (252)
88 2vsy_A XCC0866; transferase, g 99.1 8.4E-12 2.9E-16 138.3 -0.7 130 83-221 37-169 (568)
89 2y4t_A DNAJ homolog subfamily 99.1 2.6E-12 8.8E-17 135.9 -5.6 206 28-233 14-230 (450)
90 2e2e_A Formate-dependent nitri 99.1 2E-12 6.9E-17 120.1 -6.1 119 106-233 13-134 (177)
91 2fo7_A Synthetic consensus TPR 99.1 3.7E-12 1.3E-16 109.8 -4.1 118 104-230 2-119 (136)
92 1xnf_A Lipoprotein NLPI; TPR, 99.0 2.4E-11 8.2E-16 119.1 0.4 123 85-216 59-251 (275)
93 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.1E-11 3.6E-16 120.8 -2.7 110 103-218 4-134 (225)
94 3fp2_A TPR repeat-containing p 99.0 2.2E-11 7.6E-16 131.5 -0.6 147 85-241 259-405 (537)
95 2fo7_A Synthetic consensus TPR 99.0 1.9E-11 6.7E-16 105.2 -1.1 117 87-212 19-135 (136)
96 2gw1_A Mitochondrial precursor 99.0 1.3E-11 4.4E-16 132.2 -2.8 141 86-235 321-470 (514)
97 2xcb_A PCRH, regulatory protei 99.0 6.1E-12 2.1E-16 113.6 -5.0 109 124-241 5-113 (142)
98 2xpi_A Anaphase-promoting comp 99.0 3E-11 1E-15 132.8 -0.5 138 84-223 456-593 (597)
99 2kat_A Uncharacterized protein 99.0 2.2E-11 7.6E-16 105.3 -1.5 100 120-228 2-103 (115)
100 3qou_A Protein YBBN; thioredox 99.0 3.3E-11 1.1E-15 122.4 -0.7 176 24-208 103-283 (287)
101 1qqe_A Vesicular transport pro 99.0 7.8E-12 2.7E-16 127.0 -5.6 130 101-233 75-218 (292)
102 2xpi_A Anaphase-promoting comp 99.0 2.3E-11 7.9E-16 133.6 -2.4 147 84-239 422-575 (597)
103 3sz7_A HSC70 cochaperone (SGT) 99.0 2.1E-11 7.1E-16 112.3 -2.4 87 146-232 11-97 (164)
104 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.3E-11 4.5E-16 120.1 -4.1 142 87-234 22-204 (225)
105 2gw1_A Mitochondrial precursor 99.0 5.3E-11 1.8E-15 127.4 0.3 140 83-225 352-494 (514)
106 1p5q_A FKBP52, FK506-binding p 99.0 2.8E-11 9.5E-16 126.1 -2.7 116 83-207 161-292 (336)
107 1qqe_A Vesicular transport pro 99.0 8E-11 2.7E-15 119.5 0.7 129 85-216 93-235 (292)
108 3fp2_A TPR repeat-containing p 98.9 1.9E-11 6.4E-16 132.2 -5.0 140 86-234 327-482 (537)
109 2hr2_A Hypothetical protein; a 98.9 1.8E-11 6.1E-16 114.6 -4.7 96 148-243 13-131 (159)
110 4g1t_A Interferon-induced prot 98.9 6.1E-11 2.1E-15 126.5 -1.3 132 102-233 50-191 (472)
111 3edt_B KLC 2, kinesin light ch 98.9 2.3E-11 8E-16 118.8 -4.7 142 99-241 39-196 (283)
112 2l6j_A TPR repeat-containing p 98.9 1.3E-10 4.5E-15 98.3 0.3 90 148-237 6-101 (111)
113 2r5s_A Uncharacterized protein 98.9 1.8E-11 6.2E-16 114.4 -5.6 125 103-237 6-131 (176)
114 4gcn_A Protein STI-1; structur 98.9 3.2E-11 1.1E-15 107.4 -3.8 88 147-234 9-103 (127)
115 1wao_1 Serine/threonine protei 98.9 6.8E-11 2.3E-15 129.4 -2.4 121 84-213 21-154 (477)
116 2if4_A ATFKBP42; FKBP-like, al 98.9 1.7E-10 5.7E-15 120.4 -0.0 103 104-215 231-334 (338)
117 1a17_A Serine/threonine protei 98.9 1.3E-10 4.3E-15 105.2 -1.3 115 85-208 29-145 (166)
118 3edt_B KLC 2, kinesin light ch 98.9 3.4E-11 1.2E-15 117.6 -5.7 110 99-209 81-198 (283)
119 2kc7_A BFR218_protein; tetratr 98.9 8.6E-11 2.9E-15 98.4 -3.0 91 107-214 4-95 (99)
120 1dce_A Protein (RAB geranylger 98.9 2.4E-10 8.2E-15 127.9 -0.5 169 53-230 46-242 (567)
121 3upv_A Heat shock protein STI1 98.8 6E-11 2E-15 103.9 -4.4 94 148-241 6-99 (126)
122 3nf1_A KLC 1, kinesin light ch 98.8 8.4E-11 2.9E-15 117.0 -4.2 142 99-241 65-222 (311)
123 1kt0_A FKBP51, 51 kDa FK506-bi 98.8 1.5E-10 5.2E-15 125.7 -2.7 111 83-202 282-407 (457)
124 2ond_A Cleavage stimulation fa 98.8 1.1E-10 3.8E-15 119.1 -3.7 133 88-228 83-217 (308)
125 1dce_A Protein (RAB geranylger 98.8 9.7E-10 3.3E-14 123.0 3.2 135 87-230 47-194 (567)
126 3nf1_A KLC 1, kinesin light ch 98.8 9.3E-11 3.2E-15 116.6 -5.0 110 99-209 107-224 (311)
127 2c2l_A CHIP, carboxy terminus 98.8 5.9E-10 2E-14 112.8 0.7 134 84-226 19-181 (281)
128 2ond_A Cleavage stimulation fa 98.8 3.5E-10 1.2E-14 115.3 -1.5 129 86-223 33-177 (308)
129 1hxi_A PEX5, peroxisome target 98.8 1.7E-10 5.8E-15 101.9 -4.0 91 148-238 19-109 (121)
130 3ulq_A Response regulator aspa 98.8 2.2E-10 7.6E-15 119.7 -4.1 155 85-241 119-291 (383)
131 3dra_A Protein farnesyltransfe 98.8 9E-10 3.1E-14 113.9 0.4 169 52-229 49-235 (306)
132 1na3_A Designed protein CTPR2; 98.8 6.1E-10 2.1E-14 90.8 -1.2 76 149-224 12-87 (91)
133 1zu2_A Mitochondrial import re 98.7 4.8E-10 1.6E-14 104.7 -2.1 89 84-181 17-126 (158)
134 2ifu_A Gamma-SNAP; membrane fu 98.7 1.2E-10 4E-15 119.1 -7.6 127 100-230 73-211 (307)
135 3rkv_A Putative peptidylprolyl 98.7 8.2E-10 2.8E-14 101.3 -1.2 92 99-199 59-151 (162)
136 2lni_A Stress-induced-phosphop 98.7 9.1E-10 3.1E-14 95.4 -0.9 102 85-195 32-133 (133)
137 1na3_A Designed protein CTPR2; 98.7 7.5E-10 2.6E-14 90.2 -1.5 62 178-239 7-68 (91)
138 3ulq_A Response regulator aspa 98.7 5E-10 1.7E-14 117.1 -3.4 111 99-212 180-296 (383)
139 2vyi_A SGTA protein; chaperone 98.7 8.7E-10 3E-14 94.7 -1.7 103 85-196 28-130 (131)
140 4f3v_A ESX-1 secretion system 98.7 1.3E-09 4.6E-14 111.2 -1.3 130 84-222 117-249 (282)
141 2fbn_A 70 kDa peptidylprolyl i 98.7 1.2E-09 4.2E-14 103.5 -1.5 96 103-207 88-184 (198)
142 3u3w_A Transcriptional activat 98.7 4.5E-10 1.5E-14 113.5 -4.9 136 103-241 115-264 (293)
143 2ifu_A Gamma-SNAP; membrane fu 98.7 1.8E-09 6.2E-14 110.2 -0.7 111 101-216 114-230 (307)
144 2kck_A TPR repeat; tetratricop 98.7 1.8E-09 6.1E-14 90.4 -0.7 85 147-231 7-94 (112)
145 3k9i_A BH0479 protein; putativ 98.7 6.7E-10 2.3E-14 96.6 -3.8 102 86-207 7-111 (117)
146 4a1s_A PINS, partner of inscut 98.7 2.3E-10 7.9E-15 119.5 -8.1 197 39-238 51-287 (411)
147 3ro3_A PINS homolog, G-protein 98.7 1.7E-10 5.7E-15 102.6 -8.1 128 101-231 7-146 (164)
148 4g1t_A Interferon-induced prot 98.7 3.4E-09 1.2E-13 112.9 0.7 135 84-227 153-294 (472)
149 1ihg_A Cyclophilin 40; ppiase 98.6 3.6E-09 1.2E-13 112.0 0.7 97 98-203 268-364 (370)
150 3gw4_A Uncharacterized protein 98.6 6.1E-10 2.1E-14 104.3 -5.0 130 101-233 24-166 (203)
151 3q49_B STIP1 homology and U bo 98.6 9.4E-10 3.2E-14 96.8 -3.8 96 146-241 9-104 (137)
152 2kc7_A BFR218_protein; tetratr 98.6 2.6E-09 8.9E-14 89.2 -0.9 79 149-227 3-84 (99)
153 3ma5_A Tetratricopeptide repea 98.6 7.3E-10 2.5E-14 94.2 -4.4 71 146-216 7-77 (100)
154 3q15_A PSP28, response regulat 98.6 7.5E-10 2.6E-14 115.8 -5.4 149 85-235 117-282 (378)
155 3dra_A Protein farnesyltransfe 98.6 3.5E-09 1.2E-13 109.5 -0.3 134 87-229 51-195 (306)
156 3sf4_A G-protein-signaling mod 98.6 8.8E-10 3E-14 113.9 -4.8 140 99-241 183-334 (406)
157 3u3w_A Transcriptional activat 98.6 1.4E-09 4.8E-14 109.9 -3.2 107 102-210 154-267 (293)
158 3q15_A PSP28, response regulat 98.6 3.6E-09 1.2E-13 110.5 -0.4 111 99-212 178-293 (378)
159 3sf4_A G-protein-signaling mod 98.6 3.4E-10 1.2E-14 117.0 -8.5 138 99-239 83-252 (406)
160 4a1s_A PINS, partner of inscut 98.6 9.1E-10 3.1E-14 115.0 -5.5 125 100-229 45-181 (411)
161 3q7a_A Farnesyltransferase alp 98.6 4.2E-09 1.4E-13 110.7 -1.1 169 52-229 70-257 (349)
162 1ouv_A Conserved hypothetical 98.6 2.1E-09 7.1E-14 106.6 -3.3 110 102-226 73-194 (273)
163 3rjv_A Putative SEL1 repeat pr 98.6 2.3E-08 7.9E-13 96.6 3.6 113 101-226 48-174 (212)
164 3dss_A Geranylgeranyl transfer 98.6 1.1E-08 3.8E-13 106.9 1.0 165 52-225 46-238 (331)
165 2qfc_A PLCR protein; TPR, HTH, 98.5 3.7E-09 1.3E-13 106.8 -2.9 107 102-210 154-267 (293)
166 3ro2_A PINS homolog, G-protein 98.5 6.7E-10 2.3E-14 110.6 -8.6 133 99-234 79-243 (338)
167 1ouv_A Conserved hypothetical 98.5 6.3E-09 2.2E-13 103.0 -2.0 125 85-226 94-230 (273)
168 2qfc_A PLCR protein; TPR, HTH, 98.5 3.8E-09 1.3E-13 106.6 -3.6 128 103-233 115-255 (293)
169 3ro2_A PINS homolog, G-protein 98.5 1.6E-09 5.6E-14 107.7 -6.3 132 99-233 179-322 (338)
170 1na0_A Designed protein CTPR3; 98.5 9.3E-09 3.2E-13 87.4 -1.0 99 87-194 27-125 (125)
171 2kat_A Uncharacterized protein 98.5 6E-09 2.1E-13 89.8 -2.5 99 89-196 5-105 (115)
172 2xev_A YBGF; tetratricopeptide 98.5 2.8E-09 9.7E-14 92.7 -4.7 93 148-240 4-102 (129)
173 1pc2_A Mitochondria fission pr 98.5 1.3E-08 4.5E-13 94.2 -0.7 107 114-229 9-120 (152)
174 1elw_A TPR1-domain of HOP; HOP 98.5 1.1E-08 3.9E-13 86.1 -1.1 97 85-190 20-116 (118)
175 3q7a_A Farnesyltransferase alp 98.5 1.4E-08 4.6E-13 106.8 -0.8 134 87-229 72-216 (349)
176 4f3v_A ESX-1 secretion system 98.5 9.4E-09 3.2E-13 104.9 -2.1 147 82-238 19-195 (282)
177 3ro3_A PINS homolog, G-protein 98.5 3.3E-09 1.1E-13 94.0 -4.8 107 102-211 48-160 (164)
178 3dss_A Geranylgeranyl transfer 98.5 2.1E-08 7.2E-13 104.7 0.2 132 88-228 49-193 (331)
179 2dba_A Smooth muscle cell asso 98.4 1.7E-08 6E-13 89.1 -0.6 99 84-191 43-144 (148)
180 3rjv_A Putative SEL1 repeat pr 98.4 2.3E-08 8E-13 96.5 -0.3 112 101-226 16-137 (212)
181 3gw4_A Uncharacterized protein 98.4 7E-09 2.4E-13 97.0 -3.9 113 98-212 61-179 (203)
182 3ma5_A Tetratricopeptide repea 98.4 1.9E-08 6.6E-13 85.2 -1.9 73 99-180 3-75 (100)
183 2ooe_A Cleavage stimulation fa 98.4 7.4E-08 2.5E-12 105.5 1.3 136 84-228 336-477 (530)
184 2ooe_A Cleavage stimulation fa 98.3 1.7E-08 5.8E-13 110.6 -4.4 136 87-230 304-441 (530)
185 3n71_A Histone lysine methyltr 98.3 2.4E-08 8.3E-13 109.7 -3.9 128 103-231 309-452 (490)
186 1elr_A TPR2A-domain of HOP; HO 98.3 4.1E-08 1.4E-12 84.2 -2.2 109 85-196 20-128 (131)
187 3qww_A SET and MYND domain-con 98.2 1.4E-07 4.7E-12 102.1 -2.0 112 109-221 304-428 (433)
188 1klx_A Cysteine rich protein B 98.1 2.9E-07 9.8E-12 83.1 -0.3 98 109-221 31-136 (138)
189 1hz4_A MALT regulatory protein 98.1 1.2E-07 4.1E-12 98.1 -3.3 126 103-231 53-191 (373)
190 3qwp_A SET and MYND domain-con 98.1 1.6E-07 5.5E-12 101.5 -3.1 115 105-220 289-416 (429)
191 3bee_A Putative YFRE protein; 98.1 4.3E-07 1.5E-11 77.0 -0.1 68 148-215 8-78 (93)
192 3e4b_A ALGK; tetratricopeptide 98.0 1.5E-06 5.3E-11 93.8 3.1 126 83-226 193-330 (452)
193 2v5f_A Prolyl 4-hydroxylase su 98.0 4.9E-07 1.7E-11 77.6 -1.2 82 148-229 7-95 (104)
194 3n71_A Histone lysine methyltr 98.0 4.8E-07 1.6E-11 99.4 -1.9 110 98-208 346-463 (490)
195 2v5f_A Prolyl 4-hydroxylase su 98.0 4.3E-07 1.5E-11 78.0 -1.9 83 103-187 5-87 (104)
196 1pc2_A Mitochondria fission pr 98.0 7.4E-07 2.5E-11 82.5 -0.9 101 81-189 10-114 (152)
197 3e4b_A ALGK; tetratricopeptide 97.8 5.2E-06 1.8E-10 89.6 2.8 111 107-233 7-125 (452)
198 1hz4_A MALT regulatory protein 97.8 5.4E-07 1.8E-11 93.1 -6.2 126 103-232 14-153 (373)
199 2xm6_A Protein corresponding t 97.7 4E-06 1.4E-10 90.7 -0.0 73 148-224 330-409 (490)
200 1nzn_A CGI-135 protein, fissio 97.7 4.6E-06 1.6E-10 74.6 0.2 101 120-229 18-123 (126)
201 2xm6_A Protein corresponding t 97.7 6.1E-06 2.1E-10 89.2 0.7 107 103-224 111-229 (490)
202 1xi4_A Clathrin heavy chain; a 97.7 1.9E-05 6.6E-10 94.8 4.9 107 104-227 1196-1327(1630)
203 4b4t_Q 26S proteasome regulato 97.7 6.7E-06 2.3E-10 86.2 0.5 125 104-231 96-226 (434)
204 1xi4_A Clathrin heavy chain; a 97.7 4.3E-05 1.5E-09 91.9 7.3 60 147-211 1106-1165(1630)
205 3mv2_B Coatomer subunit epsilo 97.7 7.3E-06 2.5E-10 84.6 0.3 124 86-221 153-294 (310)
206 1b89_A Protein (clathrin heavy 97.6 1.1E-05 3.8E-10 87.0 1.1 105 104-227 123-254 (449)
207 3u64_A Protein TP_0956; tetrat 97.6 1.6E-05 5.5E-10 80.9 1.6 90 117-213 177-273 (301)
208 1klx_A Cysteine rich protein B 97.6 1.4E-05 4.8E-10 71.9 0.9 94 116-226 8-105 (138)
209 3ly7_A Transcriptional activat 97.5 3E-05 1E-09 81.7 3.0 126 79-214 209-344 (372)
210 4b4t_Q 26S proteasome regulato 97.4 5.9E-06 2E-10 86.6 -4.9 128 103-233 55-194 (434)
211 3bee_A Putative YFRE protein; 97.3 1.8E-05 6.2E-10 66.8 -2.1 71 100-179 3-76 (93)
212 3mv2_B Coatomer subunit epsilo 97.1 6.2E-05 2.1E-09 77.6 -0.5 133 83-228 114-269 (310)
213 3ly7_A Transcriptional activat 97.0 0.00021 7.1E-09 75.3 2.3 169 25-203 182-368 (372)
214 1nzn_A CGI-135 protein, fissio 97.0 8.5E-05 2.9E-09 66.4 -0.9 100 81-188 13-116 (126)
215 3o48_A Mitochondria fission 1 96.9 0.00011 3.6E-09 66.1 -0.5 81 149-229 43-127 (134)
216 3qwp_A SET and MYND domain-con 96.9 7.9E-05 2.7E-09 80.3 -2.3 94 98-192 324-425 (429)
217 1y8m_A FIS1; mitochondria, unk 96.7 0.0003 1E-08 64.0 0.2 82 148-229 41-126 (144)
218 1b89_A Protein (clathrin heavy 96.7 0.00034 1.2E-08 75.4 0.6 109 101-233 59-167 (449)
219 3qww_A SET and MYND domain-con 96.6 0.00011 3.7E-09 79.3 -3.5 77 98-175 335-411 (433)
220 3o48_A Mitochondria fission 1 96.3 0.00066 2.3E-08 61.0 0.2 101 81-190 19-122 (134)
221 3ffl_A Anaphase-promoting comp 96.1 0.00026 8.8E-09 66.0 -3.5 103 104-206 21-148 (167)
222 1y8m_A FIS1; mitochondria, unk 96.0 0.0013 4.4E-08 59.8 0.2 98 81-187 18-118 (144)
223 3u64_A Protein TP_0956; tetrat 95.7 0.0021 7.2E-08 65.4 0.4 134 57-204 139-293 (301)
224 4h7y_A Dual specificity protei 94.5 0.0028 9.5E-08 58.2 -2.4 112 102-215 12-129 (161)
225 4e6h_A MRNA 3'-END-processing 93.9 0.0085 2.9E-07 68.2 -0.7 128 90-226 330-481 (679)
226 3ffl_A Anaphase-promoting comp 93.3 0.013 4.5E-07 54.5 -0.4 88 102-190 62-165 (167)
227 2ff4_A Probable regulatory pro 92.4 0.011 3.6E-07 62.7 -2.7 102 105-206 117-231 (388)
228 4e6h_A MRNA 3'-END-processing 91.9 0.026 8.8E-07 64.2 -0.5 118 102-227 433-554 (679)
229 1ya0_A SMG-7 transcript varian 85.8 0.11 3.8E-06 56.8 -1.1 80 148-227 154-233 (497)
230 2uy1_A Cleavage stimulation fa 82.7 0.12 4.2E-06 56.1 -2.4 127 90-218 200-358 (493)
231 4b4t_R RPN7, 26S proteasome re 79.6 0.2 6.9E-06 53.5 -2.1 103 101-209 129-237 (429)
232 2lnm_A Protein TIC 40, chlorop 78.1 2 6.7E-05 33.0 3.8 19 484-502 37-55 (62)
233 4gns_B Protein CSD3, chitin bi 78.1 0.33 1.1E-05 55.6 -1.0 56 152-207 343-398 (754)
234 4b4t_S RPN3, 26S proteasome re 76.0 1 3.5E-05 49.2 2.1 56 160-215 245-305 (523)
235 2llw_A Heat shock protein STI1 74.3 4.5 0.00015 32.0 4.9 40 483-530 21-60 (71)
236 1zbp_A Hypothetical protein VP 74.2 0.81 2.8E-05 45.8 0.7 68 156-223 7-74 (273)
237 4gns_B Protein CSD3, chitin bi 72.2 0.63 2.2E-05 53.3 -0.7 60 103-171 337-396 (754)
238 2llw_A Heat shock protein STI1 70.4 3.3 0.00011 32.8 3.3 30 385-416 28-63 (71)
239 1ya0_A SMG-7 transcript varian 69.5 0.72 2.4E-05 50.3 -1.0 80 104-192 153-232 (497)
240 3kae_A CDC27, possible protein 68.1 0.3 1E-05 45.6 -3.7 100 104-217 34-151 (242)
241 3lvg_A Clathrin heavy chain 1; 67.6 0.6 2E-05 50.8 -2.0 102 106-226 147-275 (624)
242 3txn_A 26S proteasome regulato 65.4 0.34 1.1E-05 51.3 -4.5 98 108-208 104-209 (394)
243 2uy1_A Cleavage stimulation fa 62.2 1.7 5.8E-05 47.0 0.2 111 104-228 287-398 (493)
244 1qsa_A Protein (soluble lytic 59.9 5.3 0.00018 44.6 3.7 95 104-208 253-347 (618)
245 2lnm_A Protein TIC 40, chlorop 56.9 11 0.00039 28.7 4.0 25 483-509 13-37 (62)
246 4g26_A Pentatricopeptide repea 55.0 1.9 6.4E-05 46.9 -1.0 100 103-213 105-210 (501)
247 2crb_A Nuclear receptor bindin 49.2 3.6 0.00012 34.2 0.0 30 178-207 13-42 (97)
248 4fhn_B Nucleoporin NUP120; pro 46.1 1.6 5.4E-05 52.4 -3.7 104 101-204 840-962 (1139)
249 1zbp_A Hypothetical protein VP 45.3 4.3 0.00015 40.5 -0.1 115 85-212 13-132 (273)
250 2ff4_A Probable regulatory pro 44.4 4.8 0.00016 42.1 0.0 70 179-248 170-239 (388)
251 3mkq_A Coatomer beta'-subunit; 42.9 4 0.00014 45.7 -0.9 31 101-131 679-709 (814)
252 2w2u_A Hypothetical P60 katani 42.0 9.6 0.00033 31.0 1.5 32 101-132 17-48 (83)
253 2v6y_A AAA family ATPase, P60 41.0 10 0.00034 30.7 1.5 31 102-132 10-40 (83)
254 2llv_A Heat shock protein STI1 40.4 15 0.0005 28.9 2.3 38 483-520 24-70 (71)
255 3ls0_A SLL1638 protein, PSBQ; 35.2 52 0.0018 29.1 5.2 36 100-135 96-131 (133)
256 3mkq_B Coatomer subunit alpha; 34.7 4.1 0.00014 38.1 -2.1 86 101-208 32-117 (177)
257 4a5x_A MITD1, MIT domain-conta 33.9 16 0.00054 29.8 1.6 30 103-132 16-45 (86)
258 2cpt_A SKD1 protein, vacuolar 33.6 14 0.00047 32.0 1.3 30 103-132 18-47 (117)
259 3dm5_A SRP54, signal recogniti 33.3 40 0.0014 35.9 5.0 24 383-406 366-389 (443)
260 2v6x_A Vacuolar protein sortin 32.2 17 0.00058 29.3 1.5 31 102-132 12-42 (85)
261 1wfd_A Hypothetical protein 15 31.9 17 0.00058 30.0 1.5 31 102-132 14-44 (93)
262 4h7y_A Dual specificity protei 29.0 7.8 0.00027 35.4 -1.2 68 103-180 61-128 (161)
263 2crb_A Nuclear receptor bindin 28.9 23 0.00077 29.5 1.7 30 103-132 15-44 (97)
264 3mv2_A Coatomer subunit alpha; 27.9 33 0.0011 35.0 3.1 111 103-214 114-241 (325)
265 4g26_A Pentatricopeptide repea 26.3 9.8 0.00033 41.1 -1.3 91 113-213 80-175 (501)
266 3ax2_A Mitochondrial import re 25.1 24 0.00084 27.9 1.2 31 106-136 20-50 (73)
267 4b4t_S RPN3, 26S proteasome re 24.5 17 0.00057 39.7 0.2 112 100-216 267-380 (523)
268 3txn_A 26S proteasome regulato 24.1 6.7 0.00023 41.3 -3.0 73 151-223 104-185 (394)
269 3ax2_A Mitochondrial import re 23.7 26 0.00089 27.8 1.1 39 184-222 21-59 (73)
270 2dl1_A Spartin; SPG20, MIT, st 23.2 28 0.00095 30.1 1.3 60 160-227 17-80 (116)
271 3t5v_B Nuclear mRNA export pro 22.8 7 0.00024 42.0 -3.2 99 115-213 138-254 (455)
272 3mkq_B Coatomer subunit alpha; 22.5 23 0.00078 33.0 0.7 47 157-208 16-62 (177)
273 3zsu_A TLL2057 protein, cyanoq 21.2 52 0.0018 29.0 2.6 33 103-135 96-128 (130)
274 3t5x_A PCI domain-containing p 20.7 37 0.0013 32.0 1.7 37 178-214 12-48 (203)
275 2wb7_A PT26-6P; extra chromoso 20.6 49 0.0017 35.6 2.8 51 85-135 411-464 (526)
276 4b4t_P 26S proteasome regulato 20.5 7.6 0.00026 41.4 -3.5 106 101-209 135-247 (445)
277 4b4t_R RPN7, 26S proteasome re 20.3 31 0.0011 36.3 1.2 79 146-224 131-214 (429)
278 1oyz_A Hypothetical protein YI 20.2 2.9E+02 0.01 25.9 8.4 14 8-21 105-118 (280)
No 1
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.74 E-value=1e-19 Score=163.10 Aligned_cols=117 Identities=19% Similarity=0.291 Sum_probs=111.7
Q ss_pred ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecc
Q 007653 98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA 177 (594)
Q Consensus 98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP 177 (594)
.+|+.++.++++|+.+++.|+|++|+.+|+++|+++|.++. +|+++|.||+++|+|++|+.+|+++|+++|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 78 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAI---------LYSNRAACLTKLMEFQRALDDCDTCIRLDS 78 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHhhHHHhhccHHHHHHHHHHHHHhhh
Confidence 46677899999999999999999999999999999999854 899999999999999999999999999999
Q ss_pred cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007653 178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 223 (594)
Q Consensus 178 ~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a 223 (594)
+++.+|+++|.+|..+|+|++|+.+|+++++++|++..++..|+.+
T Consensus 79 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 79 KFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999888876
No 2
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.68 E-value=5.5e-19 Score=165.66 Aligned_cols=127 Identities=16% Similarity=0.225 Sum_probs=114.4
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceee-----eeecccCceeeeccccchhhhhhcceeeee-
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLL-----LACSLNSMSCYLKTKQYDECIKVGSEVLAY- 175 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~-----~~~~~N~a~~~~klg~y~eAi~~~~~AL~l- 175 (594)
.+..++++|+.+++.|+|++|+.+|+++|+++|.++..+ .+. ..+|+|+|.|+.++|+|++|+.+|++||++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~--a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE--AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS--CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh--hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 467899999999999999999999999999999965422 111 239999999999999999999999999999
Q ss_pred ------cccchHHH----HHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007653 176 ------DAKNVKAL----YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 230 (594)
Q Consensus 176 ------dP~~~ka~----~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~ 230 (594)
+|+++++| |++|.+|..+|+|++|+.+|++|++++|++..+...+..++..+..+
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~ 152 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDR 152 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999999999999998888888887777543
No 3
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.66 E-value=4.9e-18 Score=156.87 Aligned_cols=135 Identities=25% Similarity=0.341 Sum_probs=116.2
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccc---------cccceeeeeecccCceeeeccccchhhhhhc
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS---------SEGRTLLLACSLNSMSCYLKTKQYDECIKVG 169 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~---------~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~ 169 (594)
..+.+..++.+|+.+++.|+|.+|+.+|.++|.+.+.... .........+|+|+|.||+++|+|++|+.+|
T Consensus 7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~ 86 (162)
T 3rkv_A 7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS 86 (162)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4566889999999999999999999999999998222100 0001122558999999999999999999999
Q ss_pred ceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC-hHHHHHhHHHHHhhhccCC
Q 007653 170 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG-TIADVLRDAKEILMKEDGH 233 (594)
Q Consensus 170 ~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~-~a~~~l~~a~~~l~~~~~a 233 (594)
+++|+++|+++++|+++|.+|..+|+|++|+.+|++++.++|++. .+...+..+...+.++...
T Consensus 87 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~ 151 (162)
T 3rkv_A 87 SEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKAD 151 (162)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 8899999999888776543
No 4
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.61 E-value=2.1e-17 Score=152.12 Aligned_cols=138 Identities=6% Similarity=-0.038 Sum_probs=125.8
Q ss_pred ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc
Q 007653 81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160 (594)
Q Consensus 81 ~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg 160 (594)
...+++.+...+.......++.+..++.+|.+|++.|+|++|+.+|+++|+++|.++. +|+++|.||.++|
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~---------a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK---------AHRFLGLLYELEE 79 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTT
T ss_pred HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcC
Confidence 4456777888888888888999999999999999999999999999999999999954 8999999999999
Q ss_pred cchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhh-cccccccCCCCChHHHHHhHHHHHh
Q 007653 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSD-LSNAHEVSPDDGTIADVLRDAKEIL 227 (594)
Q Consensus 161 ~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~-lekAl~l~P~~~~a~~~l~~a~~~l 227 (594)
+|++|+.+|+++|+++|+++.+|+++|.+|..+|++++|+.. +++|++++|+++.++..+..+....
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887765 5999999999999988887765544
No 5
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.61 E-value=4e-17 Score=159.03 Aligned_cols=190 Identities=13% Similarity=0.042 Sum_probs=153.7
Q ss_pred HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhhc-CChHHHHHHHHhhhhcccccchHHHHHHHhccccccc-
Q 007653 39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLAN-ASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE- 116 (594)
Q Consensus 39 l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~~-~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~- 116 (594)
+...+...++..+.++....++......|............ ....+++.+...+.+.+...++.+..+..+|.++...
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 87 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALY 87 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh
Confidence 34445555666777777777777777777766655444221 2233466788888888888999999999999999999
Q ss_pred ----------ccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHh
Q 007653 117 ----------GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRR 186 (594)
Q Consensus 117 ----------g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~r 186 (594)
|++++|+..|.++++++|.++. +|+++|.+|..+|+|++|+..|+++++++ +++.+++++
T Consensus 88 ~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~l 157 (217)
T 2pl2_A 88 RQAEDRERGKGYLEQALSVLKDAERVNPRYAP---------LHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSAL 157 (217)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHH
T ss_pred hhhhhhcccccCHHHHHHHHHHHHHhCcccHH---------HHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHH
Confidence 9999999999999999999854 89999999999999999999999999999 999999999
Q ss_pred ccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCcc
Q 007653 187 GQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG 238 (594)
Q Consensus 187 g~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~ 238 (594)
|.+|..+|++++|+.+|+++++++|++..++..++.+...+++...+....+
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999999999999999999999999999999888888776655443
No 6
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.60 E-value=6.4e-17 Score=150.40 Aligned_cols=116 Identities=11% Similarity=0.079 Sum_probs=109.5
Q ss_pred HhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhc
Q 007653 90 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 169 (594)
Q Consensus 90 ~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~ 169 (594)
..+...+...++.+..++.+|..+++.|+|++|+.+|++++.++|.++. +|+++|.||..+|+|++|+.+|
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~---------~~~~lg~~~~~~g~~~~Ai~~~ 93 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD---------YIMGLAAIYQIKEQFQQAADLY 93 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHccHHHHHHHH
Confidence 4566667778889999999999999999999999999999999999965 8999999999999999999999
Q ss_pred ceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007653 170 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214 (594)
Q Consensus 170 ~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~ 214 (594)
+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|+.+
T Consensus 94 ~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 94 AVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999999999999999864
No 7
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=5.5e-17 Score=142.98 Aligned_cols=118 Identities=18% Similarity=0.205 Sum_probs=111.7
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch
Q 007653 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180 (594)
Q Consensus 101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ 180 (594)
..++.++.+|+.+++.|+|++|+.+|+++++++|.++. +|+++|.||+++|+|++|+.+|+++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 72 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR---------GYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV 72 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Confidence 35778999999999999999999999999999999854 899999999999999999999999999999999
Q ss_pred HHHHHhccchhhhhhHHHHhhhcccccccC------CCCChHHHHHhHHHHHh
Q 007653 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVS------PDDGTIADVLRDAKEIL 227 (594)
Q Consensus 181 ka~~~rg~al~~lg~~~eAi~~lekAl~l~------P~~~~a~~~l~~a~~~l 227 (594)
.+|+++|.+|..+|++++|+.+|+++++++ |++..++..+..+..++
T Consensus 73 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 73 RAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999 99999999999887664
No 8
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.58 E-value=8.6e-17 Score=143.93 Aligned_cols=114 Identities=21% Similarity=0.274 Sum_probs=101.8
Q ss_pred chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc
Q 007653 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 179 (594)
Q Consensus 100 ~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~ 179 (594)
.+.+.+++++|+.+++.|+|++|+.+|+++|+++|.++ .+|+|+|.||+++|+|++|+.+|+++|+++|++
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~---------~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~ 75 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI---------TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence 45677899999999999999999999999999999984 489999999999999999999999999999976
Q ss_pred -------hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007653 180 -------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 223 (594)
Q Consensus 180 -------~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a 223 (594)
+++|+++|.+|..+|+|++|+.+|++++.++|+ +++...+..+
T Consensus 76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l 125 (127)
T 4gcn_A 76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL 125 (127)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence 468999999999999999999999999999885 4454444443
No 9
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.57 E-value=2e-16 Score=145.45 Aligned_cols=131 Identities=17% Similarity=0.112 Sum_probs=117.7
Q ss_pred hhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcce
Q 007653 92 IDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE 171 (594)
Q Consensus 92 ~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~ 171 (594)
+...+...++.+..++.+|..++..|+|++|+..|.+++.++|.++. +|+++|.||..+|+|++|+.+|++
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSR---------FFLGLGACRQAMGQYDLAIHSYSY 80 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHH---------HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34445556777889999999999999999999999999999999854 899999999999999999999999
Q ss_pred eeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653 172 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 231 (594)
Q Consensus 172 AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~ 231 (594)
++.++|+++.+++++|.+|..+|++++|+.+|+++++++|+++........+...+....
T Consensus 81 al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~ 140 (148)
T 2vgx_A 81 GAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIK 140 (148)
T ss_dssp HHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC-
T ss_pred HHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888777777766665433
No 10
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.56 E-value=2.1e-16 Score=181.81 Aligned_cols=155 Identities=14% Similarity=0.091 Sum_probs=142.7
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccc
Q 007653 83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162 (594)
Q Consensus 83 ~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y 162 (594)
.++++|...|++.++..++.+.++.++|+++.+.|+|++|+.+|+++|+++|.+.. +|+|+|.+|..+|+|
T Consensus 23 G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~---------a~~nLg~~l~~~g~~ 93 (723)
T 4gyw_A 23 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD---------AYSNMGNTLKEMQDV 93 (723)
T ss_dssp TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCH
Confidence 35667888888888889999999999999999999999999999999999999854 899999999999999
Q ss_pred hhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchHH
Q 007653 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIE 242 (594)
Q Consensus 163 ~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~ie 242 (594)
++|+++|++||+++|+++.+|+++|.+|..+|++++|+.+|++|++++|++..++..++.+...+++..++.+.+++.++
T Consensus 94 ~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 94 QGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998887777666664
Q ss_pred HHHH
Q 007653 243 EITE 246 (594)
Q Consensus 243 e~~e 246 (594)
-..+
T Consensus 174 l~~~ 177 (723)
T 4gyw_A 174 IVAD 177 (723)
T ss_dssp HHHH
T ss_pred hChh
Confidence 4333
No 11
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.56 E-value=2.8e-16 Score=145.31 Aligned_cols=122 Identities=20% Similarity=0.190 Sum_probs=110.8
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~ 178 (594)
....+..++.+|+.++..|+|++|+.+|.++++++|.++ .+|+++|.||+++|+|++|+.+|+++|+++|+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 77 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP---------IYLSNRAAAYSASGQHEKAAEDAELATVVDPK 77 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH---------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 456688999999999999999999999999999999985 48999999999999999999999999999999
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh--HHHHHhHHHHHhhh
Q 007653 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT--IADVLRDAKEILMK 229 (594)
Q Consensus 179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~--a~~~l~~a~~~l~~ 229 (594)
++.+|+++|.+|..+|+|++|+.+|+++++++|++.. +...+..++.++.+
T Consensus 78 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~ 130 (164)
T 3sz7_A 78 YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEE 130 (164)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 44555555555543
No 12
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.55 E-value=3.2e-16 Score=141.94 Aligned_cols=129 Identities=13% Similarity=0.120 Sum_probs=116.7
Q ss_pred hhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcce
Q 007653 92 IDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE 171 (594)
Q Consensus 92 ~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~ 171 (594)
+...+...++....++.+|..++..|+|++|+.+|.+++.++|.++. +|+++|.||..+|+|++|+.+|++
T Consensus 7 l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~ 77 (142)
T 2xcb_A 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDAR---------YFLGLGACRQSLGLYEQALQSYSY 77 (142)
T ss_dssp --CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHH---------HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44555667777889999999999999999999999999999999854 899999999999999999999999
Q ss_pred eeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 172 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 172 AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
++.++|+++.+++++|.+|..+|++++|+.+|++++.++|+++........+...+..
T Consensus 78 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~ 135 (142)
T 2xcb_A 78 GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135 (142)
T ss_dssp HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888777777666643
No 13
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.51 E-value=9.2e-16 Score=167.01 Aligned_cols=140 Identities=24% Similarity=0.389 Sum_probs=119.1
Q ss_pred hhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccc------cccceeeeeecccCceeeeccccchhh
Q 007653 92 IDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLLLACSLNSMSCYLKTKQYDEC 165 (594)
Q Consensus 92 ~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~------~e~~~l~~~~~~N~a~~~~klg~y~eA 165 (594)
+.......+..+..++++|+.+++.|+|.+|+.+|.++|+++|.++. .+...+...+|+|+|.||+++++|++|
T Consensus 257 ~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A 336 (457)
T 1kt0_A 257 WEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKA 336 (457)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 34444456778899999999999999999999999999999998731 001112235899999999999999999
Q ss_pred hhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653 166 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 231 (594)
Q Consensus 166 i~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~ 231 (594)
+.+|+++|+++|+++++||++|.+|..+|+|++|+.+|+++++++|++..++..++.+...++++.
T Consensus 337 ~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 337 VECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998887765
No 14
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.51 E-value=5.3e-16 Score=161.98 Aligned_cols=155 Identities=21% Similarity=0.328 Sum_probs=129.8
Q ss_pred HHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccc------ccceeeeeecccCceeeeccccc
Q 007653 89 RARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS------EGRTLLLACSLNSMSCYLKTKQY 162 (594)
Q Consensus 89 ~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~------e~~~l~~~~~~N~a~~~~klg~y 162 (594)
...+.......+..+..++.+|+.+++.|+|++|+.+|.+++.+.|.+... +...+...+|+|+|.||+++|+|
T Consensus 133 ~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~ 212 (336)
T 1p5q_A 133 KESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF 212 (336)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred cchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 333444455577788999999999999999999999999999999987310 01111235899999999999999
Q ss_pred hhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC-CCCccchH
Q 007653 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH-HGPRGLLI 241 (594)
Q Consensus 163 ~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a-~~~~~~~i 241 (594)
++|+.+|+++|+++|+++++|+++|.+|..+|+|++|+.+|+++++++|++..++..++.+...++++..+ ...+...+
T Consensus 213 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 213 SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998887654 22334444
Q ss_pred HH
Q 007653 242 EE 243 (594)
Q Consensus 242 ee 243 (594)
..
T Consensus 293 ~~ 294 (336)
T 1p5q_A 293 ER 294 (336)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 15
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.50 E-value=1.3e-15 Score=145.17 Aligned_cols=137 Identities=29% Similarity=0.432 Sum_probs=120.1
Q ss_pred cccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccccc-------ceeeeeecccCceeeeccccchhhhhhc
Q 007653 97 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG-------RTLLLACSLNSMSCYLKTKQYDECIKVG 169 (594)
Q Consensus 97 ~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~-------~~l~~~~~~N~a~~~~klg~y~eAi~~~ 169 (594)
...+..+..++.+|+.++..|+|.+|+.+|.+++.+.|..+.... ..+...+|+++|.||+++++|++|+.+|
T Consensus 32 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 111 (198)
T 2fbn_A 32 EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA 111 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 345667889999999999999999999999999999888752000 0001258999999999999999999999
Q ss_pred ceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653 170 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 233 (594)
Q Consensus 170 ~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a 233 (594)
+++++++|+++.+++++|.+|..+|+|++|+.+|++++.++|++..++..++.+...+++....
T Consensus 112 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 112 SKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988776544
No 16
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.49 E-value=2.2e-15 Score=145.93 Aligned_cols=190 Identities=12% Similarity=0.114 Sum_probs=147.7
Q ss_pred Chh-HHHHhhhhhccCCCchhhhhhhhhcCCCh-hHHHHHHHH-hhcCChHHHHHHHHhhhhcccccchHHHHHHHhccc
Q 007653 36 NPE-LMRIATENMKNMRPEDLKCAAEQLTHTPP-EEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNE 112 (594)
Q Consensus 36 ~p~-l~r~A~e~mk~~~pe~~~~a~e~l~~~~p-ee~~~~~~~-~~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~ 112 (594)
||+ +...+...+...+.++....++......| ......... .......+++.+...+...+...+..+..+..+|.+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 344 44556666666666666665555544333 222222222 111123345678888888888899999999999999
Q ss_pred ccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc--chHHHHHhccch
Q 007653 113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--NVKALYRRGQAY 190 (594)
Q Consensus 113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~--~~ka~~~rg~al 190 (594)
++..|+|++|+..|++++++.|.++. .......+|+++|.++..+|+|++|+..|+++|+++|+ ++.+++++|.+|
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNAT--IEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHH--HHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 99999999999999999999998752 00011146999999999999999999999999999999 999999999999
Q ss_pred hhhhhH---------------------------HHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653 191 KDIGRL---------------------------EEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (594)
Q Consensus 191 ~~lg~~---------------------------~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l 227 (594)
...|+. ++|+.+|+++++++|++..+...+..++..+
T Consensus 164 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~~ 227 (228)
T 4i17_A 164 YNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMI 227 (228)
T ss_dssp HHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhh
Confidence 999999 9999999999999999999998888876543
No 17
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.48 E-value=1.5e-15 Score=174.75 Aligned_cols=134 Identities=13% Similarity=0.089 Sum_probs=124.1
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~ 178 (594)
.++.+++|.++|+++.+.|+|++|+.+|+++|+++|.+.. +|+|+|.+|.++|+|++|+.+|++||+++|+
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~---------a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~ 75 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA---------AHSNLASVLQQQGKLQEALMHYKEAIRISPT 75 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 5677899999999999999999999999999999999854 8999999999999999999999999999999
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (594)
Q Consensus 179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i 241 (594)
++.+|+++|.+|..+|++++|+++|++|++++|++..++..++.+...+++.+++...+++.+
T Consensus 76 ~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al 138 (723)
T 4gyw_A 76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTAL 138 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888776655544444
No 18
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.47 E-value=2.8e-15 Score=156.76 Aligned_cols=132 Identities=33% Similarity=0.472 Sum_probs=97.8
Q ss_pred ccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccc--------ccceeeeeecccCceeeeccccchhhhhhc
Q 007653 98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS--------EGRTLLLACSLNSMSCYLKTKQYDECIKVG 169 (594)
Q Consensus 98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~--------e~~~l~~~~~~N~a~~~~klg~y~eAi~~~ 169 (594)
..++.+..++.+|+.+++.|+|.+|+.+|.+++.+.|.+... ....+...+|+|+|.||+++++|++|+.+|
T Consensus 174 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~ 253 (338)
T 2if4_A 174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHC 253 (338)
T ss_dssp HHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 356678899999999999999999999999999998876310 000111138999999999999999999999
Q ss_pred ceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 170 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 170 ~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
+++|+++|+++++||++|.+|..+|+|++|+.+|+++++++|++..++..+..+......
T Consensus 254 ~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~ 313 (338)
T 2if4_A 254 NIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA 313 (338)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888655443
No 19
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.46 E-value=1.8e-15 Score=147.24 Aligned_cols=148 Identities=11% Similarity=0.077 Sum_probs=134.1
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecc----
Q 007653 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT---- 159 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl---- 159 (594)
+++.+...+.+.+...++.+..+..+|.+++..|+|++|+..|+++++++|.++. +|+++|.+|...
T Consensus 20 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~lg~~~~~~~~~~ 90 (217)
T 2pl2_A 20 RYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG---------GYMVLSEAYVALYRQA 90 (217)
T ss_dssp CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHhhhhh
Confidence 3556777778888888889999999999999999999999999999999999854 899999999999
Q ss_pred -------ccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007653 160 -------KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 232 (594)
Q Consensus 160 -------g~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~ 232 (594)
|++++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++ +++.++..++.+...+++...
T Consensus 91 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~ 169 (217)
T 2pl2_A 91 EDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDE 169 (217)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHH
T ss_pred hhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999999 999999999999999887766
Q ss_pred CCCCccchH
Q 007653 233 HHGPRGLLI 241 (594)
Q Consensus 233 a~~~~~~~i 241 (594)
+...++..+
T Consensus 170 A~~~~~~al 178 (217)
T 2pl2_A 170 ALAQYAKAL 178 (217)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 544444443
No 20
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.46 E-value=3.2e-15 Score=159.55 Aligned_cols=156 Identities=7% Similarity=-0.089 Sum_probs=135.0
Q ss_pred CCChhHHHHHHHHhhcC-ChHHHHHHHHhhhhcccccchHHHHHHHhccccccccc-chhHHHHHHHhhhcccccccccc
Q 007653 64 HTPPEEVAEIGEKLANA-SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR-FSNALQKYLLAKKNLQGIHSSEG 141 (594)
Q Consensus 64 ~~~pee~~~~~~~~~~~-~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~-y~eAi~~Y~kAL~l~p~~~~~e~ 141 (594)
...|+............ ....+..+...+.+.+..+++.+.+|..+|.++...|+ |++|+.+|.++|.++|.+..
T Consensus 91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~--- 167 (382)
T 2h6f_A 91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ--- 167 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH---
T ss_pred hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH---
Confidence 34555555443332111 12235567888888888999999999999999999997 99999999999999999854
Q ss_pred ceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHh
Q 007653 142 RTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 221 (594)
Q Consensus 142 ~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~ 221 (594)
+|+++|.||..+|+|++|+.+|+++|+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..++..++
T Consensus 168 ------a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg 241 (382)
T 2h6f_A 168 ------VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRY 241 (382)
T ss_dssp ------HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ------HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 007653 222 DAKEILM 228 (594)
Q Consensus 222 ~a~~~l~ 228 (594)
.+...+.
T Consensus 242 ~~l~~l~ 248 (382)
T 2h6f_A 242 FVISNTT 248 (382)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 9988743
No 21
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.45 E-value=3.9e-15 Score=136.84 Aligned_cols=116 Identities=15% Similarity=0.082 Sum_probs=105.3
Q ss_pred HhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhc
Q 007653 108 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRG 187 (594)
Q Consensus 108 ~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg 187 (594)
.+|..+..+|++++|+..|.+++...|..+. .++++|.||++.|+|++|+.+|+++|+++|+++.+|+++|
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~---------~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg 72 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSI---------KGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLG 72 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHT---------THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4789999999999999999999999998854 7899999999999999999999999999999999999999
Q ss_pred cchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007653 188 QAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 232 (594)
Q Consensus 188 ~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~ 232 (594)
.+|..+|++++|+.+|+++++++|++..++..++.+....++...
T Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 73 LLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Confidence 999999999999999999999999999999999999888876543
No 22
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.44 E-value=4.1e-15 Score=131.74 Aligned_cols=122 Identities=26% Similarity=0.344 Sum_probs=112.4
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~ 178 (594)
.+..+..++.+|..++..|+|++|+.+|.+++.++|.++ .+|+++|.||+.+|+|++|+.+|+++++++|+
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 75 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA---------VYYTNRALCYLKMQQPEQALADCRRALELDGQ 75 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH---------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch
Confidence 344578899999999999999999999999999999884 48999999999999999999999999999999
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCC-----CChHHHHHhHHHHHhhh
Q 007653 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD-----DGTIADVLRDAKEILMK 229 (594)
Q Consensus 179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~-----~~~a~~~l~~a~~~l~~ 229 (594)
++.+++++|.+|..+|++++|+.+|++++.++|+ +..+...+..++.+...
T Consensus 76 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 76 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 78888888888776644
No 23
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.42 E-value=5.5e-15 Score=157.70 Aligned_cols=139 Identities=9% Similarity=-0.074 Sum_probs=129.0
Q ss_pred hcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecccc-chhhhhhccee
Q 007653 94 AQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ-YDECIKVGSEV 172 (594)
Q Consensus 94 a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~-y~eAi~~~~~A 172 (594)
..+.+.++.+..+..+|.++...|+|++|+.+|.++|.++|.+. .+|+++|.+|..+|+ |++|+.+|+++
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~---------~a~~~~g~~l~~~g~d~~eAl~~~~~a 158 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY---------TVWHFRRVLLKSLQKDLHEEMNYITAI 158 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH---------HHHHHHHHHHHHcccCHHHHHHHHHHH
Confidence 34567888899999999999999999999999999999999985 489999999999997 99999999999
Q ss_pred eeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653 173 LAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (594)
Q Consensus 173 L~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i 241 (594)
|+++|+++.+|++||.+|..+|+|++|+.+|+++++++|++..++..++.+...++++..+...+...|
T Consensus 159 l~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al 227 (382)
T 2h6f_A 159 IEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLL 227 (382)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998877665555555
No 24
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.41 E-value=5.5e-15 Score=138.12 Aligned_cols=148 Identities=13% Similarity=0.042 Sum_probs=92.1
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164 (594)
Q Consensus 85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e 164 (594)
++.|...+.+.++..++.+..+..+|.+++..|++++|+..|.+++...|..+. ++.+++.++...++++.
T Consensus 21 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 91 (184)
T 3vtx_A 21 FDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAE---------AYYILGSANFMIDEKQA 91 (184)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHH---------HHHHHHHHHHHcCCHHH
Confidence 444555555555556666666666666666666666666666666666665532 55666666666666666
Q ss_pred hhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653 165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (594)
Q Consensus 165 Ai~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i 241 (594)
|+..+.+++.++|.+..+++.+|.+|..+|+|++|+.+|+++++++|++..++..++.+...+++.+.+...+...+
T Consensus 92 a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 168 (184)
T 3vtx_A 92 AIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKAL 168 (184)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666555544444444
No 25
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.41 E-value=2.3e-14 Score=124.96 Aligned_cols=121 Identities=20% Similarity=0.271 Sum_probs=113.2
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~ 178 (594)
.+..+..++.+|..++..|+|++|+.+|.++++..|.+. .+++++|.||...++|++|+..|+++++++|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~---------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 82 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA---------KLYSNRAACYTKLLEFQLALKDCEECIQLEPT 82 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH---------HHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 456688999999999999999999999999999998874 48999999999999999999999999999999
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (594)
Q Consensus 179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~ 228 (594)
++.+++++|.+|..+|++++|+.+|++++.++|++..++..++.+....+
T Consensus 83 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 83 FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999988876553
No 26
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.40 E-value=1.5e-14 Score=153.37 Aligned_cols=133 Identities=27% Similarity=0.482 Sum_probs=115.0
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccc-------cccceeeeeecccCceeeeccccchhhhhhcce
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS-------SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE 171 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~-------~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~ 171 (594)
..+.+..++.+|+.+++.|+|++|+.+|+++|++.+..+. .........+|+|+|.||+++++|++|+.+|++
T Consensus 219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 298 (370)
T 1ihg_A 219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 4556788999999999999999999999999994333100 001112255899999999999999999999999
Q ss_pred eeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653 172 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 231 (594)
Q Consensus 172 AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~ 231 (594)
+|+++|+++++|+++|.+|..+|+|++|+.+|++|++++|++..++..+..++..+++++
T Consensus 299 al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 299 ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988887654
No 27
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.40 E-value=8.3e-15 Score=136.87 Aligned_cols=167 Identities=13% Similarity=0.059 Sum_probs=139.6
Q ss_pred HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhhc-CChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc
Q 007653 39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLAN-ASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG 117 (594)
Q Consensus 39 l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~~-~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g 117 (594)
....+.-..+..+.++....+++.....|............ ....+++.+...+.......+..+..+...|..+...+
T Consensus 8 y~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (184)
T 3vtx_A 8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMID 87 (184)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcC
Confidence 33444444556677888888888777778777665544221 12334556777777777788888999999999999999
Q ss_pred cchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHH
Q 007653 118 RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLE 197 (594)
Q Consensus 118 ~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~ 197 (594)
++..|+..|.+++.+.|.+.. ++.++|.+|.++|+|++|+..|+++++++|.++.+|+++|.+|..+|+++
T Consensus 88 ~~~~a~~~~~~a~~~~~~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 88 EKQAAIDALQRAIALNTVYAD---------AYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp CHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHhCccchH---------HHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 999999999999999999854 78999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccccCCCCC
Q 007653 198 EAVSDLSNAHEVSPDDG 214 (594)
Q Consensus 198 eAi~~lekAl~l~P~~~ 214 (594)
+|+.+|++|++++|+++
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 99999999999999763
No 28
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.39 E-value=2.7e-14 Score=163.09 Aligned_cols=170 Identities=13% Similarity=-0.013 Sum_probs=138.4
Q ss_pred hccCCCchhhhhhhhhc--------CCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc
Q 007653 47 MKNMRPEDLKCAAEQLT--------HTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG 117 (594)
Q Consensus 47 mk~~~pe~~~~a~e~l~--------~~~pee~~~~~~~~-~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g 117 (594)
+...++++....+++.. ...|+.......+. ......+++.|...+.+.++..++.+..++.+|..++..|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 33444455555454444 44454444333331 1122334567788888888889999999999999999999
Q ss_pred cchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHH
Q 007653 118 RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLE 197 (594)
Q Consensus 118 ~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~ 197 (594)
+|++|+..|+++++++|.++. +|+|+|.||.++|+|++ +.+|+++|+++|+++.+|+++|.+|..+|+++
T Consensus 482 ~~~~A~~~~~~al~l~P~~~~---------~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~ 551 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTFPGELA---------PKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRV 551 (681)
T ss_dssp CHHHHHHHHHHHHHHSTTCSH---------HHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999854 89999999999999999 99999999999999999999999999999999
Q ss_pred HHhhhcccccccCCCCChHHHHHhHHHHH
Q 007653 198 EAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (594)
Q Consensus 198 eAi~~lekAl~l~P~~~~a~~~l~~a~~~ 226 (594)
+|+.+|+++++++|++..++..++.+...
T Consensus 552 ~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 552 GAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 99999999999999999999888887533
No 29
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.39 E-value=2.1e-14 Score=138.74 Aligned_cols=117 Identities=13% Similarity=0.066 Sum_probs=109.9
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccc----------------Cceeeeccccchhhh
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLN----------------SMSCYLKTKQYDECI 166 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N----------------~a~~~~klg~y~eAi 166 (594)
++.+..+|..++..|+|++|+.+|.++++++|.++. +|++ +|.||.+.|+|++|+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 74 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTE---------MYYWTNVDKNSEISSKLATELALAYKKNRNYDKAY 74 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHH---------HHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH---------HHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHH
Confidence 567889999999999999999999999999998854 6777 999999999999999
Q ss_pred hhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (594)
Q Consensus 167 ~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~ 228 (594)
..|+++|+++|+++.+++++|.+|..+|++++|+.+|+++++++|++..++..++.+....+
T Consensus 75 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 75 LFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998876554
No 30
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.38 E-value=3.6e-14 Score=120.55 Aligned_cols=115 Identities=23% Similarity=0.278 Sum_probs=108.1
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchH
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 181 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k 181 (594)
.+..+..+|..++..|+|++|+.+|.+++...|.++ .++.++|.||...++|++|+..+.++++++|+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 73 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH---------VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK 73 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH---------HHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHH
Confidence 467899999999999999999999999999999874 38899999999999999999999999999999999
Q ss_pred HHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007653 182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 225 (594)
Q Consensus 182 a~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~ 225 (594)
+++++|.+|..+|++++|+.+|+++++++|++..++..++.+..
T Consensus 74 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 74 GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999888887753
No 31
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.38 E-value=2.1e-14 Score=127.34 Aligned_cols=102 Identities=8% Similarity=-0.037 Sum_probs=91.6
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHH
Q 007653 105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY 184 (594)
Q Consensus 105 ~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~ 184 (594)
.++.+|..+++.|+|++|+..|+++++++|.++. +|+++|.||...|++++|+..|+++++++|+++.+++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 89 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREE---------AWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA 89 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 4778899999999999999999999999999854 8999999999999999999999999999999999999
Q ss_pred HhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653 185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215 (594)
Q Consensus 185 ~rg~al~~lg~~~eAi~~lekAl~l~P~~~~ 215 (594)
++|.+|..+|++++|+..|+++++++|++..
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 90 ALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999999999998754
No 32
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=2.4e-14 Score=156.33 Aligned_cols=181 Identities=12% Similarity=0.000 Sum_probs=146.5
Q ss_pred hhhhhccCCC-chhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhccccccc----
Q 007653 43 ATENMKNMRP-EDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE---- 116 (594)
Q Consensus 43 A~e~mk~~~p-e~~~~a~e~l~~~~pee~~~~~~~~~-~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~---- 116 (594)
+.-.....+. ++....+++.....|........... .....+++.|...+.+.+...++ +..+..+|.+++..
T Consensus 109 g~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~ 187 (474)
T 4abn_A 109 GKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDS 187 (474)
T ss_dssp HHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSC
T ss_pred HHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCC
Confidence 3333444445 55555555554445554443333211 11223456777888888888888 69999999999999
Q ss_pred -----ccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecc--------ccchhhhhhcceeeeecc---cch
Q 007653 117 -----GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT--------KQYDECIKVGSEVLAYDA---KNV 180 (594)
Q Consensus 117 -----g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl--------g~y~eAi~~~~~AL~ldP---~~~ 180 (594)
|+|++|+.+|+++++++|.++. +|+++|.+|..+ ++|++|+..|+++++++| .++
T Consensus 188 ~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 258 (474)
T 4abn_A 188 GDEHSRHVMDSVRQAKLAVQMDVLDGR---------SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNP 258 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCH
T ss_pred hhhhhhhHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCH
Confidence 9999999999999999999854 899999999999 999999999999999999 999
Q ss_pred HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 233 (594)
Q Consensus 181 ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a 233 (594)
.+|+++|.+|..+|+|++|+.+|+++++++|++..++..++.+...+++...+
T Consensus 259 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 259 DLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888776543
No 33
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.37 E-value=9.2e-14 Score=134.17 Aligned_cols=149 Identities=11% Similarity=0.045 Sum_probs=108.0
Q ss_pred HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhhcCChHHHHHHHHhhhhcccccchHHHHHHHhccccccccc
Q 007653 39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR 118 (594)
Q Consensus 39 l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~ 118 (594)
++..+...+...+.++....+++.....|+.......... .......+....++|.++++.|+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-----------------~~~~~~~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV-----------------DKNSEISSKLATELALAYKKNRN 69 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHS-----------------CTTSHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhh-----------------cchhhhhHHHHHHHHHHHHHCCC
Confidence 4555666565655665555555555555544433221100 00011123344559999999999
Q ss_pred chhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhh----
Q 007653 119 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG---- 194 (594)
Q Consensus 119 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg---- 194 (594)
|++|+..|+++++++|.++. +|+++|.||..+|+|++|+.+|+++|+++|+++.+|+++|.+|+..|
T Consensus 70 ~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPNNVD---------CLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999854 89999999999999999999999999999999999999888875443
Q ss_pred -------------------------------hHHHHhhhcccccccCCCC
Q 007653 195 -------------------------------RLEEAVSDLSNAHEVSPDD 213 (594)
Q Consensus 195 -------------------------------~~~eAi~~lekAl~l~P~~ 213 (594)
+|++|+.+|++|++++|+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 141 KKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 4667777777777777753
No 34
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.37 E-value=5.6e-14 Score=121.37 Aligned_cols=123 Identities=25% Similarity=0.247 Sum_probs=114.8
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~ 178 (594)
.+..+..+..+|..++..|+|++|+.+|.+++...|.++ .++.++|.||...++|++|+..|.+++.++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 78 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA---------VYFCNRAAAYSKLGNYAGAVQDCERAICIDPA 78 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH---------HHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc
Confidence 455678999999999999999999999999999998874 38899999999999999999999999999999
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007653 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 230 (594)
Q Consensus 179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~ 230 (594)
++.+++.+|.+|..+|++++|+.+|++++.++|++..++..++.+...++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 79 YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999998877654
No 35
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=5.1e-14 Score=125.35 Aligned_cols=120 Identities=32% Similarity=0.489 Sum_probs=109.4
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~ 178 (594)
.+..+..++.+|..++..|+|.+|+.+|++++++.|..+. ...+|+++|.||+..++|++|+.+|+++++++|+
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 97 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD------QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG 97 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchH------HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc
Confidence 4556788999999999999999999999999999887511 1237899999999999999999999999999999
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHH
Q 007653 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK 224 (594)
Q Consensus 179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~ 224 (594)
++.+++++|.+|..+|++++|+.+|++++.++|++..++..+..+.
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888887764
No 36
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.35 E-value=8.3e-14 Score=134.81 Aligned_cols=137 Identities=14% Similarity=0.097 Sum_probs=121.4
Q ss_pred HHHHHHHhhhhcccccc-hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccc
Q 007653 84 EIATMRARIDAQMNYEF-NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~-~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y 162 (594)
++..+...+...+...+ .....+..+|.+++..|+|++|+.+|.++++++|.+. .+|+++|.||..+|+|
T Consensus 22 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---------~~~~~l~~~~~~~~~~ 92 (228)
T 4i17_A 22 NYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA---------NAYIGKSAAYRDMKNN 92 (228)
T ss_dssp CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH---------HHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH---------HHHHHHHHHHHHcccH
Confidence 34556666666666665 5667888899999999999999999999999999984 4899999999999999
Q ss_pred hhhhhhcceeeeecccch-------HHHHHhccchhhhhhHHHHhhhcccccccCCC--CChHHHHHhHHHHHhhh
Q 007653 163 DECIKVGSEVLAYDAKNV-------KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD--DGTIADVLRDAKEILMK 229 (594)
Q Consensus 163 ~eAi~~~~~AL~ldP~~~-------ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~--~~~a~~~l~~a~~~l~~ 229 (594)
++|+..|+++++++|+++ .+|+++|.++..+|++++|+.+|+++++++|+ +..++..++.+....+.
T Consensus 93 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~ 168 (228)
T 4i17_A 93 QEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGA 168 (228)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH
Confidence 999999999999999998 77999999999999999999999999999999 88999999998776654
No 37
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.32 E-value=1.2e-13 Score=119.62 Aligned_cols=120 Identities=21% Similarity=0.302 Sum_probs=110.6
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc-
Q 007653 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN- 179 (594)
Q Consensus 101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~- 179 (594)
+.+..+..+|..++..|+|++|+.+|.+++.+.|.++ .+++++|.+|...|+|++|+..|.+++.++|.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 72 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM---------TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR 72 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH---------HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc
Confidence 3467899999999999999999999999999998874 488999999999999999999999999999988
Q ss_pred ------hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007653 180 ------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 230 (594)
Q Consensus 180 ------~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~ 230 (594)
+.+++++|.+|..+|++++|+.+|++++.+.| +..++..+..+...+++.
T Consensus 73 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999 688888888888877654
No 38
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.32 E-value=7e-14 Score=130.76 Aligned_cols=106 Identities=19% Similarity=0.111 Sum_probs=95.6
Q ss_pred ccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch----------hhhhhcceeeeecccchHH
Q 007653 113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD----------ECIKVGSEVLAYDAKNVKA 182 (594)
Q Consensus 113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~----------eAi~~~~~AL~ldP~~~ka 182 (594)
.-+.++|++|+..|.++++++|.++. +|+|+|.|+..+++|+ +||..|++||+++|++..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~ae---------a~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A 82 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDAD---------NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEA 82 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHH
Confidence 44667899999999999999999965 8999999999998865 9999999999999999999
Q ss_pred HHHhccchhhhh-----------hHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653 183 LYRRGQAYKDIG-----------RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (594)
Q Consensus 183 ~~~rg~al~~lg-----------~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l 227 (594)
||++|.+|..+| +|++|+.+|++|++++|++...+..+..+....
T Consensus 83 ~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~ 138 (158)
T 1zu2_A 83 VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP 138 (158)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCH
Confidence 999999999885 899999999999999999988877777664443
No 39
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.32 E-value=4.9e-14 Score=153.89 Aligned_cols=170 Identities=11% Similarity=0.068 Sum_probs=142.4
Q ss_pred hhcCCChhHHHHHHHH-hhcCChHHH-HHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccc
Q 007653 61 QLTHTPPEEVAEIGEK-LANASPEEI-ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS 138 (594)
Q Consensus 61 ~l~~~~pee~~~~~~~-~~~~~~~el-~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~ 138 (594)
.+....|......... .......++ +.|...+.+.++..+..+..+..+|.+++..|+|++|+.+|+++++++|.. .
T Consensus 93 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~ 171 (474)
T 4abn_A 93 EVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNK-V 171 (474)
T ss_dssp HHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCH-H
T ss_pred HHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCH-H
Confidence 3334444444443333 112233455 678888888888899999999999999999999999999999999998873 3
Q ss_pred cccceeeeeecccCceeeecc---------ccchhhhhhcceeeeecccchHHHHHhccchhhh--------hhHHHHhh
Q 007653 139 SEGRTLLLACSLNSMSCYLKT---------KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI--------GRLEEAVS 201 (594)
Q Consensus 139 ~e~~~l~~~~~~N~a~~~~kl---------g~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~l--------g~~~eAi~ 201 (594)
+|.++|.+|..+ |+|++|+..|+++++++|+++.+|+++|.+|..+ |+|++|+.
T Consensus 172 ---------~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~ 242 (474)
T 4abn_A 172 ---------SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS 242 (474)
T ss_dssp ---------HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 789999999999 9999999999999999999999999999999999 99999999
Q ss_pred hcccccccCC---CCChHHHHHhHHHHHhhhccCCCCCccch
Q 007653 202 DLSNAHEVSP---DDGTIADVLRDAKEILMKEDGHHGPRGLL 240 (594)
Q Consensus 202 ~lekAl~l~P---~~~~a~~~l~~a~~~l~~~~~a~~~~~~~ 240 (594)
+|+++++++| ++..++..++.+...++++..+...+...
T Consensus 243 ~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 284 (474)
T 4abn_A 243 AYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284 (474)
T ss_dssp HHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999 99999999999999988776554444433
No 40
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.31 E-value=3.2e-13 Score=133.76 Aligned_cols=189 Identities=12% Similarity=0.048 Sum_probs=146.7
Q ss_pred HHHHhhhhhccCCCchhhhhhhhhcCCChhH---HHHHHHH-hhcCChHHHHHHHHhhhhcccccc---hHHHHHHHhcc
Q 007653 39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEE---VAEIGEK-LANASPEEIATMRARIDAQMNYEF---NAAKMLKKQGN 111 (594)
Q Consensus 39 l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee---~~~~~~~-~~~~~~~el~aa~~~~~a~~~~~~---~~a~~l~~~Gn 111 (594)
+...+...++..+.++....++.+....|.. ....... .......++..+...+...+...+ ....+++.+|.
T Consensus 18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~ 97 (261)
T 3qky_A 18 AFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAM 97 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHH
Confidence 6666777788888888888888887665554 3333222 111223345567777777776544 56789999999
Q ss_pred cccc--------cccchhHHHHHHHhhhccccccccccceeeeeec--------------ccCceeeeccccchhhhhhc
Q 007653 112 ELYS--------EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACS--------------LNSMSCYLKTKQYDECIKVG 169 (594)
Q Consensus 112 ~~~~--------~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~--------------~N~a~~~~klg~y~eAi~~~ 169 (594)
+++. .|+|++|+..|+++++..|..+.. ..++ +++|.||++.|+|++|+..|
T Consensus 98 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 98 CYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELV------DDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTH------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhcccccccchhHHHHHHHHHHHHHHCcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999 999999999999999999987531 1111 78999999999999999999
Q ss_pred ceeeeeccc---chHHHHHhccchhhh----------hhHHHHhhhcccccccCCCCCh---HHHHHhHHHHHhhhccCC
Q 007653 170 SEVLAYDAK---NVKALYRRGQAYKDI----------GRLEEAVSDLSNAHEVSPDDGT---IADVLRDAKEILMKEDGH 233 (594)
Q Consensus 170 ~~AL~ldP~---~~ka~~~rg~al~~l----------g~~~eAi~~lekAl~l~P~~~~---a~~~l~~a~~~l~~~~~a 233 (594)
+++++.+|+ .+.+++++|.+|..+ |++++|+..|+++++.+|+++. +...+..+...+++.++.
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999998 678999999999988 9999999999999999999964 555666666666665443
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.31 E-value=1.1e-13 Score=136.18 Aligned_cols=118 Identities=18% Similarity=0.078 Sum_probs=107.9
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka 182 (594)
+..+..+|.++...|+|++|+.+|.+++++.|..+. +|.++|.+|...|+|++|+..|+++++++|.++.+
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 144 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLD---------MYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKV 144 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH---------HHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHH---------HHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHH
Confidence 566899999999999999999999999999998854 89999999999999999999999999999999999
Q ss_pred HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 183 ~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
++++|..++..+++++|+.+|+++++++|++..++..++.+...+++
T Consensus 145 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~ 191 (272)
T 3u4t_A 145 FYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP 191 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc
Confidence 99999444444599999999999999999999999999999888866
No 42
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.30 E-value=4.1e-13 Score=140.09 Aligned_cols=177 Identities=14% Similarity=0.011 Sum_probs=103.7
Q ss_pred hccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHH
Q 007653 47 MKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQK 125 (594)
Q Consensus 47 mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~-~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~ 125 (594)
....+.++....++......|.......... ......+++.+...+.+.+...++.+..+..+|..++..|++++|+..
T Consensus 180 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 259 (388)
T 1w3b_A 180 NAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDT 259 (388)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3344444554444444444444433322221 111222333455555555555666666666666666666666666666
Q ss_pred HHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhccc
Q 007653 126 YLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSN 205 (594)
Q Consensus 126 Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lek 205 (594)
|++++++.|.++. +|.+++.+|.+.|++++|+..|+++++++|+++.+++++|.+|...|++++|+..|++
T Consensus 260 ~~~al~~~p~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (388)
T 1w3b_A 260 YRRAIELQPHFPD---------AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp HHHHHHTCSSCHH---------HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHhhCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666666533 5666666666666666666666666666666666666666666666666666666666
Q ss_pred ccccCCCCChHHHHHhHHHHHhhhccC
Q 007653 206 AHEVSPDDGTIADVLRDAKEILMKEDG 232 (594)
Q Consensus 206 Al~l~P~~~~a~~~l~~a~~~l~~~~~ 232 (594)
+++++|++..++..++.+....++...
T Consensus 331 al~~~p~~~~~~~~l~~~~~~~g~~~~ 357 (388)
T 1w3b_A 331 ALEVFPEFAAAHSNLASVLQQQGKLQE 357 (388)
T ss_dssp HTTSCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666666555555443
No 43
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.30 E-value=1.6e-13 Score=143.16 Aligned_cols=142 Identities=13% Similarity=0.067 Sum_probs=117.6
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~ 163 (594)
+++.+...+...+...+..+..+..+|..+...|++++|+..|+++++++|.+. .+|.++|.+|...++|+
T Consensus 150 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~lg~~~~~~~~~~ 220 (388)
T 1w3b_A 150 RLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL---------DAYINLGNVLKEARIFD 220 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHTTTCTT
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---------HHHHHHHHHHHHcCCHH
Confidence 344566666666667777788888888888888999999999999988888874 37888888998999999
Q ss_pred hhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCC
Q 007653 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHH 234 (594)
Q Consensus 164 eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~ 234 (594)
+|+..|.+++.++|+++.+++++|.+|...|++++|+..|+++++++|+++.++..++.+....++...+.
T Consensus 221 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 291 (388)
T 1w3b_A 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE 291 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999998899888899999999999999999999999999999988888888888877776655433
No 44
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.30 E-value=1.7e-13 Score=127.41 Aligned_cols=132 Identities=11% Similarity=0.059 Sum_probs=115.1
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCcee-eeccccc-
Q 007653 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSC-YLKTKQY- 162 (594)
Q Consensus 85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~-~~klg~y- 162 (594)
++.+...+...+...+..+..+..+|..++..|+|++|+.+|.+++.+.|.++. ++.++|.+ |+..++|
T Consensus 26 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE---------LYAALATVLYYQASQHM 96 (177)
T ss_dssp -CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHH---------HHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHhcCCcc
Confidence 334444555555567777889999999999999999999999999999998853 88999999 8899999
Q ss_pred -hhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007653 163 -DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 225 (594)
Q Consensus 163 -~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~ 225 (594)
++|+..|+++++++|+++.+++.+|.+|...|++++|+.+|++++.++|++......+..+..
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~ 160 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINM 160 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999876665555443
No 45
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.30 E-value=1.2e-13 Score=142.64 Aligned_cols=201 Identities=9% Similarity=-0.033 Sum_probs=143.8
Q ss_pred HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhhc-CChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc
Q 007653 39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLAN-ASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG 117 (594)
Q Consensus 39 l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~~-~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g 117 (594)
++..+...++..+.++....++.+....|............ ....++..+...+...+...+..+..+..+|..+...|
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 147 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS 147 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccc
Confidence 44555555556666666666666655555544443333111 12234556777788888888888999999999999999
Q ss_pred cchhHHHHHHHhhhccccccccccce-eeeeecccCceeeeccccchhhhhhcceeeeeccc--chHHHHHhccchhhhh
Q 007653 118 RFSNALQKYLLAKKNLQGIHSSEGRT-LLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--NVKALYRRGQAYKDIG 194 (594)
Q Consensus 118 ~y~eAi~~Y~kAL~l~p~~~~~e~~~-l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~--~~ka~~~rg~al~~lg 194 (594)
+|++|+.+|.+++++.|......... ....++.+++.+|...|+|++|+..|+++++++|+ ++.+++++|.+|..+|
T Consensus 148 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g 227 (365)
T 4eqf_A 148 HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG 227 (365)
T ss_dssp CHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC
Confidence 99999999999999998875410000 11234455699999999999999999999999999 8999999999999999
Q ss_pred hHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccc
Q 007653 195 RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGL 239 (594)
Q Consensus 195 ~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~ 239 (594)
++++|+..|+++++++|++..++..++.+....++...+...+..
T Consensus 228 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 228 EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTR 272 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999999999998888776655444433
No 46
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.29 E-value=1e-13 Score=143.29 Aligned_cols=192 Identities=11% Similarity=0.031 Sum_probs=138.5
Q ss_pred hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHH----------Hhcc
Q 007653 43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLK----------KQGN 111 (594)
Q Consensus 43 A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~-~~~~~el~aa~~~~~a~~~~~~~~a~~l~----------~~Gn 111 (594)
+.-.....+.++....++......|........... .....+++.+...+...+...++....+. .+|.
T Consensus 106 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~ 185 (365)
T 4eqf_A 106 GITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSK 185 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC----------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHH
Confidence 333344555566666555555444544333322211 11222344566666666655555444444 4499
Q ss_pred cccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchh
Q 007653 112 ELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYK 191 (594)
Q Consensus 112 ~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~ 191 (594)
.+...|+|++|+.+|.+++++.|.... ..+|+++|.+|...|+|++|+..|+++++++|+++.+|+++|.+|.
T Consensus 186 ~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 258 (365)
T 4eqf_A 186 SPVDSSVLEGVKELYLEAAHQNGDMID-------PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLA 258 (365)
T ss_dssp ---CCHHHHHHHHHHHHHHHHSCSSCC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHhCcCccC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999999999998321 3478999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653 192 DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (594)
Q Consensus 192 ~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i 241 (594)
.+|++++|+.+|+++++++|++..++..++.+...++++..+...+...+
T Consensus 259 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 259 NGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTAL 308 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988776555554444
No 47
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.29 E-value=3.2e-13 Score=122.46 Aligned_cols=116 Identities=22% Similarity=0.341 Sum_probs=108.0
Q ss_pred chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc
Q 007653 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 179 (594)
Q Consensus 100 ~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~ 179 (594)
.+.+..+..+|..++..|+|++|+.+|.+++.+.|.+. .+|+++|.||...|+|++|+..|.++++++|.+
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 80 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA---------IYYGNRSLAYLRTECYGYALGDATRAIELDKKY 80 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 34577899999999999999999999999999999874 489999999999999999999999999999999
Q ss_pred hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHH
Q 007653 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK 224 (594)
Q Consensus 180 ~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~ 224 (594)
+.+++++|.+|..+|++++|+.+|++++.++|++..++..+..+.
T Consensus 81 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 125 (166)
T 1a17_A 81 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 125 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999998887776663
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.29 E-value=1.2e-13 Score=133.16 Aligned_cols=190 Identities=13% Similarity=0.015 Sum_probs=141.4
Q ss_pred HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc
Q 007653 39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG 117 (594)
Q Consensus 39 l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~-~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g 117 (594)
+...+...+...+.++....++......|........... .....++..+...+...+...+.....+..+|..++..|
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 105 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKE 105 (243)
T ss_dssp ----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhc
Confidence 3344555555666677777677666666655444333311 112234556777777777777778899999999999999
Q ss_pred cchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHH
Q 007653 118 RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLE 197 (594)
Q Consensus 118 ~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~ 197 (594)
+|++|+.+|.+++++.|..+. ++.+++.+|...|+|++|+..|+++++++|+++.+++.+|.+|...|+++
T Consensus 106 ~~~~A~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 106 MYKEAKDMFEKALRAGMENGD---------LFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp CHHHHHHHHHHHHHHTCCSHH---------HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred cHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 999999999999999888743 78999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCc
Q 007653 198 EAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPR 237 (594)
Q Consensus 198 eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~ 237 (594)
+|+..|++++.++|++..++..++.+....++...+....
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 216 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEML 216 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999999999999999999999999988887665443333
No 49
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.28 E-value=1.7e-13 Score=119.87 Aligned_cols=116 Identities=12% Similarity=0.077 Sum_probs=103.4
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc---hH
Q 007653 105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VK 181 (594)
Q Consensus 105 ~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~---~k 181 (594)
.++.+|..++..|+|++|+..|.++++..|..+. ...+++++|.||++.|+|++|+..|++++.++|++ +.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 77 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY------TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAG 77 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHH
Confidence 5778899999999999999999999999998751 01378999999999999999999999999999999 89
Q ss_pred HHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007653 182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (594)
Q Consensus 182 a~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~ 226 (594)
+++++|.+|..+|++++|+..|++++...|++..+...+..+...
T Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 78 GLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999998776666555443
No 50
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.28 E-value=1.2e-13 Score=141.96 Aligned_cols=150 Identities=14% Similarity=0.105 Sum_probs=129.7
Q ss_pred HHHHHHHhhhhcccccch--HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecccc
Q 007653 84 EIATMRARIDAQMNYEFN--AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ 161 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~~--~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~ 161 (594)
++..+...+...+...+. .+..+..+|..++..|+|++|+.+|.+++.+.|.++ .+|+++|.+|...|+
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---------~~~~~l~~~~~~~g~ 266 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY---------LLWNKLGATLANGNQ 266 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH---------HHHHHHHHHHHHcCC
Confidence 445566666666666777 788999999999999999999999999999998874 388999999999999
Q ss_pred chhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC-----------ChHHHHHhHHHHHhhhc
Q 007653 162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-----------GTIADVLRDAKEILMKE 230 (594)
Q Consensus 162 y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~-----------~~a~~~l~~a~~~l~~~ 230 (594)
|++|+..|+++++++|+++.+++++|.+|..+|++++|+.+|++++.++|++ ..++..++.+...+++.
T Consensus 267 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 267 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 9999999999999999999999999999999999999999999999999988 78999999999998877
Q ss_pred cCCCCCccchHH
Q 007653 231 DGHHGPRGLLIE 242 (594)
Q Consensus 231 ~~a~~~~~~~ie 242 (594)
..+.......++
T Consensus 347 ~~A~~~~~~~l~ 358 (368)
T 1fch_A 347 DAYGAADARDLS 358 (368)
T ss_dssp GGHHHHHTTCHH
T ss_pred HhHHHhHHHHHH
Confidence 655444434443
No 51
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.28 E-value=3e-13 Score=148.12 Aligned_cols=127 Identities=20% Similarity=0.263 Sum_probs=114.5
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch
Q 007653 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180 (594)
Q Consensus 101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ 180 (594)
+.+..++.+|+.+++.|+|++|+.+|++++++.|... .+|+++|.||.++|+|++|+.+|+++++++|+++
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~---------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 74 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA---------IYYGNRSLAYLRTECYGYALGDATRAIELDKKYI 74 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH---------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence 4466789999999999999999999999999999884 4899999999999999999999999999999999
Q ss_pred HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH--HHHhhhccCCCCC
Q 007653 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA--KEILMKEDGHHGP 236 (594)
Q Consensus 181 ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a--~~~l~~~~~a~~~ 236 (594)
.+|+++|.+|..+|+|++|+.+|+++++++|++..++..++.+ ....++++++...
T Consensus 75 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~ 132 (477)
T 1wao_1 75 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 132 (477)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999988 5555666655444
No 52
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.26 E-value=1.2e-13 Score=138.88 Aligned_cols=195 Identities=8% Similarity=-0.057 Sum_probs=154.7
Q ss_pred HhcChh-HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhc
Q 007653 33 MMANPE-LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQG 110 (594)
Q Consensus 33 m~~~p~-l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~-~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~G 110 (594)
+-.+++ ++..+...+...+.++....++.+....|.........+. .....++..+...+...+...+..+..+..+|
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 344555 5555666666777777777666665555544322221110 11222455666777777777888899999999
Q ss_pred ccccccc-cchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccc
Q 007653 111 NELYSEG-RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA 189 (594)
Q Consensus 111 n~~~~~g-~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~a 189 (594)
..++..| ++++|+.+|.+++.+.|.++. +|.++|.+|...|+|++|+..|.++++++|++..+++.+|.+
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 168 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGP---------AWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLE 168 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHH---------HHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 9999999 999999999999999998854 799999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCC
Q 007653 190 YKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGP 236 (594)
Q Consensus 190 l~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~ 236 (594)
|...|++++|+..|++++.++|++..++..++.+....++...+...
T Consensus 169 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHH
Confidence 99999999999999999999999999999999998888766544333
No 53
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.26 E-value=2.4e-13 Score=136.48 Aligned_cols=153 Identities=14% Similarity=0.123 Sum_probs=131.0
Q ss_pred CChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecc
Q 007653 80 ASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT 159 (594)
Q Consensus 80 ~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl 159 (594)
....++..+...+...+...+..+..+..+|..++..|+|++|+.+|.+++++.|.++. +|.++|.+|...
T Consensus 149 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~ 219 (327)
T 3cv0_A 149 AAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQ---------LWNKLGATLANG 219 (327)
T ss_dssp TSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHT
T ss_pred HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHc
Confidence 34455666777777777777778899999999999999999999999999999888743 789999999999
Q ss_pred ccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCC------------CChHHHHHhHHHHHh
Q 007653 160 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD------------DGTIADVLRDAKEIL 227 (594)
Q Consensus 160 g~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~------------~~~a~~~l~~a~~~l 227 (594)
|+|++|+..|+++++++|++..+++.+|.+|..+|++++|+.+|++++.++|+ +..++..++.+...+
T Consensus 220 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (327)
T 3cv0_A 220 NRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM 299 (327)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999 788888889888888
Q ss_pred hhccCCCCCccchH
Q 007653 228 MKEDGHHGPRGLLI 241 (594)
Q Consensus 228 ~~~~~a~~~~~~~i 241 (594)
++...+.......+
T Consensus 300 g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 300 NRPDLVELTYAQNV 313 (327)
T ss_dssp TCHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHHHH
Confidence 77655443333333
No 54
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.25 E-value=7.6e-14 Score=159.37 Aligned_cols=142 Identities=13% Similarity=-0.030 Sum_probs=128.6
Q ss_pred hHHHHHHHHhhhhcc--------cccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCc
Q 007653 82 PEEIATMRARIDAQM--------NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM 153 (594)
Q Consensus 82 ~~el~aa~~~~~a~~--------~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a 153 (594)
..+++.+...+.+.+ ...++.+..+..+|..++..|+|++|+..|+++++++|.+.. +|+++|
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---------a~~~lg 474 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWR---------LVWYRA 474 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH---------HHHHHH
T ss_pred ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHH---------HHHHHH
Confidence 334556666676666 677888999999999999999999999999999999999854 899999
Q ss_pred eeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653 154 SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 233 (594)
Q Consensus 154 ~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a 233 (594)
.+|+.+|+|++|+.+|+++|+++|+++.+|+++|.+|..+|+|++ +.+|+++++++|++..++..++.+...+++++++
T Consensus 475 ~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 475 VAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999888876544
No 55
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.25 E-value=5.3e-13 Score=134.16 Aligned_cols=143 Identities=16% Similarity=0.147 Sum_probs=122.4
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164 (594)
Q Consensus 85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e 164 (594)
++.+...+...+...+..+..+..+|..++..|+|++|+.+|++++.+.+.............+|.++|.+|...|+|++
T Consensus 175 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 44566667777777788889999999999999999999999999999875433211112224588999999999999999
Q ss_pred hhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653 165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (594)
Q Consensus 165 Ai~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l 227 (594)
|+..|+++++++|+++.+++.+|.+|..+|++++|+.+|+++++++|++..++..++.+....
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 317 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMY 317 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876443
No 56
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.25 E-value=2.9e-14 Score=132.38 Aligned_cols=109 Identities=12% Similarity=-0.023 Sum_probs=100.8
Q ss_pred HHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhc
Q 007653 124 QKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDL 203 (594)
Q Consensus 124 ~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~l 203 (594)
..|.+++.++|.+.. +++++|.+|++.|+|++|+..|++++.++|+++.+|+++|.+|..+|+|++|+.+|
T Consensus 23 ~~l~~al~l~p~~~~---------~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~ 93 (151)
T 3gyz_A 23 ATLKDINAIPDDMMD---------DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLY 93 (151)
T ss_dssp CCTGGGCCSCHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHhCCCHHHHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHH
Confidence 457888999998854 89999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653 204 SNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (594)
Q Consensus 204 ekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i 241 (594)
+++++++|+++.++..++.+...+++...+...+...+
T Consensus 94 ~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 94 AVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVI 131 (151)
T ss_dssp HHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999998887766666555
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.25 E-value=3.9e-13 Score=136.39 Aligned_cols=103 Identities=26% Similarity=0.378 Sum_probs=98.6
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchH
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 181 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k 181 (594)
.+..++.+|+.++..|+|++|+.+|.+++.++|.++ .+|+|+|.||+++|+|++|+.+|+++++++|++++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 73 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA---------VYYTNRALCYLKMQQPEQALADCRRALELDGQSVK 73 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH---------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Confidence 467899999999999999999999999999999884 48999999999999999999999999999999999
Q ss_pred HHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007653 182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213 (594)
Q Consensus 182 a~~~rg~al~~lg~~~eAi~~lekAl~l~P~~ 213 (594)
+++++|.+|..+|+|++|+.+|+++++++|++
T Consensus 74 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 74 AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999976
No 58
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.24 E-value=4.3e-13 Score=129.95 Aligned_cols=116 Identities=17% Similarity=0.204 Sum_probs=65.1
Q ss_pred ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecc
Q 007653 98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA 177 (594)
Q Consensus 98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP 177 (594)
..+..+..+..+|..++..|+|++|+.+|.+++.+.|.++ .+|+++|.+|...|+|++|+..|+++++++|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA---------RGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccH---------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 4445555555555555555555555555555555555542 2455555555555555555555555555555
Q ss_pred cchHHHHHhccchhhhhhHHHHhhhcccccccC------CCCChHHHHHhH
Q 007653 178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS------PDDGTIADVLRD 222 (594)
Q Consensus 178 ~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~------P~~~~a~~~l~~ 222 (594)
+++.+++.+|.+|..+|++++|+.+|+++++++ |++..++..+..
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 555555555555555555555555555555555 555444444433
No 59
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.24 E-value=1.1e-12 Score=132.99 Aligned_cols=180 Identities=20% Similarity=0.281 Sum_probs=133.7
Q ss_pred hccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHH------------HHHhcccc
Q 007653 47 MKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKM------------LKKQGNEL 113 (594)
Q Consensus 47 mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~-~~~~~el~aa~~~~~a~~~~~~~~a~~------------l~~~Gn~~ 113 (594)
+...+.++....++......|........... .....+++.+...+...+...++.... ....|..+
T Consensus 165 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 244 (359)
T 3ieg_A 165 IKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL 244 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555545544333222211 111223344555555555544443332 34558889
Q ss_pred cccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhh
Q 007653 114 YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI 193 (594)
Q Consensus 114 ~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~l 193 (594)
+..|+|++|+..|.+++...|.++. ....++.++|.||.+.|+|++|+..|+++++++|+++.+++.+|.+|..+
T Consensus 245 ~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (359)
T 3ieg_A 245 IRDGRYTDATSKYESVMKTEPSVAE-----YTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIE 319 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCSSHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCchH-----HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 9999999999999999999888642 11235778999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653 194 GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 231 (594)
Q Consensus 194 g~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~ 231 (594)
|++++|+.+|+++++++|++..++..+..++..+++.+
T Consensus 320 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 357 (359)
T 3ieg_A 320 EMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ 357 (359)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999988887643
No 60
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.24 E-value=2.4e-13 Score=118.71 Aligned_cols=101 Identities=18% Similarity=0.118 Sum_probs=88.2
Q ss_pred ccccchhHHHHHHHhhhc---cccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchh
Q 007653 115 SEGRFSNALQKYLLAKKN---LQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYK 191 (594)
Q Consensus 115 ~~g~y~eAi~~Y~kAL~l---~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~ 191 (594)
..|+|++|+.+|++++++ +|.++ .+|+++|.||+.+|+|++|+..|+++++++|+++.+++++|.+|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~---------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 72 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLA---------ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY 72 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 468999999999999999 57663 489999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHhhhcccccccCCCCChHHHHHhHHH
Q 007653 192 DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK 224 (594)
Q Consensus 192 ~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~ 224 (594)
.+|++++|+..|++++.++|+++.+......+.
T Consensus 73 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~ 105 (117)
T 3k9i_A 73 NLGRYEQGVELLLKIIAETSDDETIQSYKQAIL 105 (117)
T ss_dssp HHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 999999999999999999999988766554443
No 61
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.23 E-value=3.1e-13 Score=149.91 Aligned_cols=133 Identities=12% Similarity=0.047 Sum_probs=93.6
Q ss_pred HHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhh
Q 007653 86 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 165 (594)
Q Consensus 86 ~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eA 165 (594)
+.+...+.+.+...+..+..+..+|..++..|+|++|+.+|+++++++|.+.. +|+++|.+|..+|+|++|
T Consensus 6 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 6 PRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPE---------AVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ---------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHH---------HHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHHHH
Confidence 34445555555566666777888888888888888888888888887777643 677888888888888888
Q ss_pred hhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653 166 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (594)
Q Consensus 166 i~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l 227 (594)
+..|+++++++|+++.+++++|.+|..+|++++|+.+|+++++++|++..++..++.+...+
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL 138 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888777777777777766
No 62
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.23 E-value=8.9e-13 Score=112.75 Aligned_cols=116 Identities=28% Similarity=0.392 Sum_probs=108.0
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka 182 (594)
+..+..+|..++..|+|++|+..|.+++...|... .++.+++.+|...|+|++|+..+.+++.++|.+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 79 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---------EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH---------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHH
Confidence 66889999999999999999999999999988774 378999999999999999999999999999999999
Q ss_pred HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653 183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (594)
Q Consensus 183 ~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l 227 (594)
++.+|.+|...|++++|+.+|++++.++|++..++..++.+....
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 80 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998888876543
No 63
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.22 E-value=1.9e-13 Score=132.46 Aligned_cols=157 Identities=11% Similarity=0.080 Sum_probs=124.8
Q ss_pred HHHHHHhhhhcccccchH-------HHHHHHhcccccccccchhHHHHHHHhhhccccccc-----------------cc
Q 007653 85 IATMRARIDAQMNYEFNA-------AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS-----------------SE 140 (594)
Q Consensus 85 l~aa~~~~~a~~~~~~~~-------a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~-----------------~e 140 (594)
+..+...+...+...+.. +..+..+|..+...|+|++|+.+|.+++.+.|.... ..
T Consensus 54 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 133 (258)
T 3uq3_A 54 YETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAY 133 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHH
Confidence 334444455544444433 788999999999999999999999999994432000 00
Q ss_pred cceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHH
Q 007653 141 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL 220 (594)
Q Consensus 141 ~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l 220 (594)
..+....+|.++|.+|...|+|++|+..|+++++++|.++.+++++|.+|..+|++++|+.+|+++++++|++..++..+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 213 (258)
T 3uq3_A 134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK 213 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 00111447899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhccCCCCCccchH
Q 007653 221 RDAKEILMKEDGHHGPRGLLI 241 (594)
Q Consensus 221 ~~a~~~l~~~~~a~~~~~~~i 241 (594)
+.+...+++...+.......+
T Consensus 214 ~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 214 ATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHH
Confidence 999999887766555544444
No 64
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.21 E-value=4.4e-13 Score=112.92 Aligned_cols=105 Identities=14% Similarity=0.116 Sum_probs=97.9
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc--
Q 007653 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK-- 178 (594)
Q Consensus 101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~-- 178 (594)
..+..+..+|..++..|+|++|+.+|.+++++.|... .+|+++|.+|+.+|+|++|+..|+++++++|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~ 74 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEES---------KYWLMKGKALYNLERYEEAVDCYNYVINVIEDEY 74 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTT
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH---------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccc
Confidence 3456788899999999999999999999999998874 37899999999999999999999999999999
Q ss_pred chHHHHHhccchhhh-hhHHHHhhhcccccccCCCCC
Q 007653 179 NVKALYRRGQAYKDI-GRLEEAVSDLSNAHEVSPDDG 214 (594)
Q Consensus 179 ~~ka~~~rg~al~~l-g~~~eAi~~lekAl~l~P~~~ 214 (594)
+..+++.+|.+|..+ |++++|+++|++++..+|.++
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 75 NKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp CHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 999999999999999 999999999999999999764
No 65
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.21 E-value=5.7e-13 Score=128.34 Aligned_cols=175 Identities=13% Similarity=0.048 Sum_probs=136.2
Q ss_pred hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchh
Q 007653 43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN 121 (594)
Q Consensus 43 A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~-~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~e 121 (594)
+.-.....+.++....++......|........... .....+++.+...+...+...+.....+..+|..++..|+|++
T Consensus 64 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 64 ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 333344555566655555554444443333222211 1122345566666777777777788899999999999999999
Q ss_pred HHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhh
Q 007653 122 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS 201 (594)
Q Consensus 122 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~ 201 (594)
|+..|.+++++.|.+. .++.++|.+|.+.|+|++|+..+.+++.++|+++.+++.+|.+|..+|++++|+.
T Consensus 144 A~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 214 (243)
T 2q7f_A 144 ALPYLQRAVELNENDT---------EARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALE 214 (243)
T ss_dssp HHHHHHHHHHHCTTCH---------HHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHH
T ss_pred HHHHHHHHHHhCCccH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHH
Confidence 9999999999998874 3789999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccCCCCChHHHHHhHHHHH
Q 007653 202 DLSNAHEVSPDDGTIADVLRDAKEI 226 (594)
Q Consensus 202 ~lekAl~l~P~~~~a~~~l~~a~~~ 226 (594)
+|+++++++|++..++..+..+...
T Consensus 215 ~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 215 MLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHTC----
T ss_pred HHHHHHccCcchHHHHHHHHHHHhh
Confidence 9999999999999998888776543
No 66
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.21 E-value=5.9e-13 Score=121.79 Aligned_cols=143 Identities=13% Similarity=0.172 Sum_probs=124.2
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164 (594)
Q Consensus 85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e 164 (594)
+..+...+...+...+..+..+..+|..++..|++++|+.+|.++++..|... .++.+++.+|...+++++
T Consensus 24 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~~a~~~~~~~~~~~ 94 (186)
T 3as5_A 24 YSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV---------KVATVLGLTYVQVQKYDL 94 (186)
T ss_dssp HHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---------HHHHHHHHHHHHhcCHHH
Confidence 44555666666666667788899999999999999999999999999988774 378999999999999999
Q ss_pred hhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCC
Q 007653 165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGP 236 (594)
Q Consensus 165 Ai~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~ 236 (594)
|+..+++++.++|.++.+++.+|.+|...|++++|+..|++++.++|++..++..++.+....++...+...
T Consensus 95 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 95 AVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988887765544333
No 67
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.21 E-value=7.3e-13 Score=129.03 Aligned_cols=182 Identities=11% Similarity=0.025 Sum_probs=142.1
Q ss_pred hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchh
Q 007653 43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN 121 (594)
Q Consensus 43 A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~-~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~e 121 (594)
+...+...+.++....++......|........... .....+++.+...+...+...+.....+..+|..++..|+|++
T Consensus 44 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 123 (252)
T 2ho1_A 44 GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEE 123 (252)
T ss_dssp HHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHH
Confidence 444455566666666666555444544333222211 1122345566666777777777778899999999999999999
Q ss_pred HHHHHHHhhh--ccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHH
Q 007653 122 ALQKYLLAKK--NLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEA 199 (594)
Q Consensus 122 Ai~~Y~kAL~--l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eA 199 (594)
|+.+|.+++. ..|.. ..+++++|.+|...|++++|+..|.++++++|.++.+++.+|.+|..+|++++|
T Consensus 124 A~~~~~~~~~~~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 124 AYQRLLEASQDTLYPER---------SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHHHHHHHTTCTTCTTH---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCccCccc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999 55555 347899999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653 200 VSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 233 (594)
Q Consensus 200 i~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a 233 (594)
+..|++++.++|++..++..+..+....++...+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 228 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTA 228 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHH
Confidence 9999999999999998888888887777655433
No 68
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.20 E-value=8.9e-13 Score=135.37 Aligned_cols=202 Identities=10% Similarity=-0.043 Sum_probs=142.2
Q ss_pred HHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhccccccccc
Q 007653 40 MRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR 118 (594)
Q Consensus 40 ~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~-~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~ 118 (594)
+..+...+...+.++....++.+....|........... .....++..+...+...+...+..+..+..+|..+...|+
T Consensus 68 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 147 (368)
T 1fch_A 68 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL 147 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Confidence 333444444555555555555555445544433332211 1122234456666777777777788889999999999999
Q ss_pred chhHHHHHHHhhhccccccccccc----------------------------------------ee--eeeecccCceee
Q 007653 119 FSNALQKYLLAKKNLQGIHSSEGR----------------------------------------TL--LLACSLNSMSCY 156 (594)
Q Consensus 119 y~eAi~~Y~kAL~l~p~~~~~e~~----------------------------------------~l--~~~~~~N~a~~~ 156 (594)
+++|+..|.+++.+.|........ +. ...++.++|.+|
T Consensus 148 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~ 227 (368)
T 1fch_A 148 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 227 (368)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHH
Confidence 999999998888887765431100 00 245677888888
Q ss_pred eccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCC
Q 007653 157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGP 236 (594)
Q Consensus 157 ~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~ 236 (594)
...|+|++|+..|++++.++|+++.+++++|.+|..+|++++|+.+|++++.++|++..++..++.+...+++...+...
T Consensus 228 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 307 (368)
T 1fch_A 228 NLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 307 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88999999999999999989998899999999999999999999999999999998888888888888888776655444
Q ss_pred ccchH
Q 007653 237 RGLLI 241 (594)
Q Consensus 237 ~~~~i 241 (594)
....+
T Consensus 308 ~~~al 312 (368)
T 1fch_A 308 FLEAL 312 (368)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 69
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.19 E-value=8.6e-13 Score=112.00 Aligned_cols=97 Identities=21% Similarity=0.272 Sum_probs=89.2
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc--
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-- 179 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~-- 179 (594)
.+..+..+|..++..|+|++|+.+|++++++.|.++. +|+|+|.||+++|+|++|+.+|+++++++|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 73 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPV---------GYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEH 73 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccH
Confidence 4678999999999999999999999999999998854 88999999999999999999999999999999
Q ss_pred ----hHHHHHhccchhhhhhHHHHhhhccccc
Q 007653 180 ----VKALYRRGQAYKDIGRLEEAVSDLSNAH 207 (594)
Q Consensus 180 ----~ka~~~rg~al~~lg~~~eAi~~lekAl 207 (594)
..+++++|.++..+|++++|+..|++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 74 VAIRSKLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 9999999999999999999999888754
No 70
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.19 E-value=6.4e-13 Score=131.61 Aligned_cols=139 Identities=13% Similarity=0.062 Sum_probs=119.3
Q ss_pred HHHHHHHhhhhcccccchH---HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec--
Q 007653 84 EIATMRARIDAQMNYEFNA---AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK-- 158 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~~~---a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k-- 158 (594)
++..+...+...+...+.. +.+++.+|.++++.|+|++|+..|++++++.|..+. ...+++++|.||+.
T Consensus 30 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~a~~~lg~~~~~~~ 103 (261)
T 3qky_A 30 KYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR------VPQAEYERAMCYYKLS 103 (261)
T ss_dssp CHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT------HHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch------hHHHHHHHHHHHHHhc
Confidence 3445666666666665555 889999999999999999999999999999886643 13478999999999
Q ss_pred ------cccchhhhhhcceeeeecccchHHH-----------------HHhccchhhhhhHHHHhhhcccccccCCCC--
Q 007653 159 ------TKQYDECIKVGSEVLAYDAKNVKAL-----------------YRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-- 213 (594)
Q Consensus 159 ------lg~y~eAi~~~~~AL~ldP~~~ka~-----------------~~rg~al~~lg~~~eAi~~lekAl~l~P~~-- 213 (594)
.|+|++|+..|+++++++|++..++ +.+|.+|...|+|++|+..|+++++..|++
T Consensus 104 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 183 (261)
T 3qky_A 104 PPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPW 183 (261)
T ss_dssp CCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT
T ss_pred ccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCch
Confidence 9999999999999999999987666 999999999999999999999999999985
Q ss_pred -ChHHHHHhHHHHHhh
Q 007653 214 -GTIADVLRDAKEILM 228 (594)
Q Consensus 214 -~~a~~~l~~a~~~l~ 228 (594)
..++..++.+...++
T Consensus 184 ~~~a~~~l~~~~~~~g 199 (261)
T 3qky_A 184 ADDALVGAMRAYIAYA 199 (261)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 457888888887774
No 71
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.18 E-value=1.5e-12 Score=116.27 Aligned_cols=120 Identities=13% Similarity=0.107 Sum_probs=101.8
Q ss_pred hcCCChhHHHHHHHH-hhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccc
Q 007653 62 LTHTPPEEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE 140 (594)
Q Consensus 62 l~~~~pee~~~~~~~-~~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e 140 (594)
+....|+..+...++ .......++..|...+...+...+..+..+.++|.++++.|+|++|+..|+++|+++|.+..
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-- 82 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK-- 82 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH--
Confidence 344567666665544 12223345667888888889999999999999999999999999999999999999999854
Q ss_pred cceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccch
Q 007653 141 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY 190 (594)
Q Consensus 141 ~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al 190 (594)
+|+++|.||..+|+|++|+.+|+++|+++|++..++..++.|+
T Consensus 83 -------a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 83 -------GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp -------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred -------HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 8999999999999999999999999999999999999998876
No 72
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.18 E-value=6.8e-13 Score=134.48 Aligned_cols=186 Identities=10% Similarity=0.082 Sum_probs=147.8
Q ss_pred HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc
Q 007653 39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG 117 (594)
Q Consensus 39 l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~-~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g 117 (594)
++..+...+...+.++....++.+....|........... .....++..+...+...+...+.....+..+|..++..|
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC
Confidence 3444555555666666666666555555554443333311 112334556777777777778888899999999999999
Q ss_pred cchhHHHHHHHhhhccc---cccccccceeeeeecccC------------ceeeeccccchhhhhhcceeeeecccchHH
Q 007653 118 RFSNALQKYLLAKKNLQ---GIHSSEGRTLLLACSLNS------------MSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (594)
Q Consensus 118 ~y~eAi~~Y~kAL~l~p---~~~~~e~~~l~~~~~~N~------------a~~~~klg~y~eAi~~~~~AL~ldP~~~ka 182 (594)
+|++|+..|.+++++.| ..+. ++.++ +.+|...|+|++|+..++++++++|.++.+
T Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 156 (359)
T 3ieg_A 86 KLDEAEDDFKKVLKSNPSEQEEKE---------AESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL 156 (359)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ChHHHHHHHHHHHhcCCcccChHH---------HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHH
Confidence 99999999999999999 6643 44444 799999999999999999999999999999
Q ss_pred HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653 183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 233 (594)
Q Consensus 183 ~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a 233 (594)
++.+|.+|..+|++++|+..|++++.++|++..++..++.+....++...+
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999999999999998888765543
No 73
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.16 E-value=1.7e-12 Score=123.05 Aligned_cols=137 Identities=12% Similarity=0.016 Sum_probs=116.5
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhccccccc-ccchhHHHHHHHhhh--ccccccccccceeeeeecccCceeeeccc
Q 007653 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSE-GRFSNALQKYLLAKK--NLQGIHSSEGRTLLLACSLNSMSCYLKTK 160 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~-g~y~eAi~~Y~kAL~--l~p~~~~~e~~~l~~~~~~N~a~~~~klg 160 (594)
++..+...+...+...+.....+..+|..++.. |+|++|+.+|.++++ ..|.. ..+++++|.+|...|
T Consensus 57 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~ 127 (225)
T 2vq2_A 57 VNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTP---------YIANLNKGICSAKQG 127 (225)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCH---------HHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcch---------HHHHHHHHHHHHHcC
Confidence 344566666666666777788999999999999 999999999999998 33333 347899999999999
Q ss_pred cchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCC-CCChHHHHHhHHHHHhhh
Q 007653 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP-DDGTIADVLRDAKEILMK 229 (594)
Q Consensus 161 ~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P-~~~~a~~~l~~a~~~l~~ 229 (594)
++++|+..|.++++++|.++.+++.+|.+|...|++++|+..|++++.++| ++..++..+..+....+.
T Consensus 128 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (225)
T 2vq2_A 128 QFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGN 197 (225)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999999 888887777666555544
No 74
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.16 E-value=9.7e-13 Score=125.24 Aligned_cols=119 Identities=16% Similarity=0.097 Sum_probs=107.4
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka 182 (594)
+..++.+|..++..|+|++|+.+|.+++. + . ..+|+++|.||...|+|++|+..|.+++.++|+++.+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~--~-~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 73 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQD--P-H---------SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA 73 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSS--C-C---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcC--C-C---------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHH
Confidence 55688999999999999999999999963 2 2 3479999999999999999999999999999999999
Q ss_pred HHHhccchhhhhhHHHHhhhcccccccCCCCC----------------hHHHHHhHHHHHhhhccCC
Q 007653 183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG----------------TIADVLRDAKEILMKEDGH 233 (594)
Q Consensus 183 ~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~----------------~a~~~l~~a~~~l~~~~~a 233 (594)
++++|.+|..+|+|++|+.+|++++.+.|++. .++..++.+...+++...+
T Consensus 74 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 140 (213)
T 1hh8_A 74 YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA 140 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH
Confidence 99999999999999999999999999999887 8889999988888766544
No 75
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.16 E-value=4.5e-12 Score=124.40 Aligned_cols=131 Identities=20% Similarity=0.080 Sum_probs=113.2
Q ss_pred HHHHHHHhhhhcccc----cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecc
Q 007653 84 EIATMRARIDAQMNY----EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT 159 (594)
Q Consensus 84 el~aa~~~~~a~~~~----~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl 159 (594)
+++.+...+...+.. .+..+..+..+|..++..|+|++|+.+|.+++++.|.++. +|.++|.+|...
T Consensus 20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~la~~~~~~ 90 (275)
T 1xnf_A 20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE---------VFNYLGIYLTQA 90 (275)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH---------HHHHHHHHHHHc
Confidence 344444444444443 4567889999999999999999999999999999998743 899999999999
Q ss_pred ccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007653 160 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 223 (594)
Q Consensus 160 g~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a 223 (594)
|+|++|+..|+++++++|.++.+++.+|.+|..+|++++|+..|++++.++|++......+..+
T Consensus 91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA 154 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987655544433
No 76
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.16 E-value=1.8e-12 Score=131.81 Aligned_cols=142 Identities=12% Similarity=0.024 Sum_probs=125.1
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccc
Q 007653 83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162 (594)
Q Consensus 83 ~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y 162 (594)
.+++.|...+++.+...++.+.++..+|.++...|++++|+..|++++...|... ..+.+.+..+...+++
T Consensus 131 g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~---------~~~~~~~~~l~~~~~~ 201 (287)
T 3qou_A 131 SNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR---------YQGLVAQIELLXQAAD 201 (287)
T ss_dssp TCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH---------HHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH---------HHHHHHHHHHHhhccc
Confidence 3455677788888888899999999999999999999999999999999988552 3566777778889999
Q ss_pred hhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC--ChHHHHHhHHHHHhhhccCC
Q 007653 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD--GTIADVLRDAKEILMKEDGH 233 (594)
Q Consensus 163 ~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~--~~a~~~l~~a~~~l~~~~~a 233 (594)
.+|+..|++++.++|+++.+++++|.+|...|++++|+..|+++++++|++ ..++..+..+...+++...+
T Consensus 202 ~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 202 TPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred CccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 999999999999999999999999999999999999999999999999998 88999999998888765543
No 77
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.15 E-value=5.3e-12 Score=124.10 Aligned_cols=135 Identities=10% Similarity=0.011 Sum_probs=114.9
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164 (594)
Q Consensus 85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e 164 (594)
++.+...+...+...+..+..+..+|.+++..|+|++|+.+|.++++ .+.++. ....+|.++|.||...|+|++
T Consensus 19 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~-----~~~~~~~~lg~~~~~~~~~~~ 92 (272)
T 3u4t_A 19 YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATK-----AKSADFEYYGKILMKKGQDSL 92 (272)
T ss_dssp HHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTT-----CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchh-----HHHHHHHHHHHHHHHcccHHH
Confidence 33444445555555666677899999999999999999999999999 554432 123358999999999999999
Q ss_pred hhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHh-HHHH
Q 007653 165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR-DAKE 225 (594)
Q Consensus 165 Ai~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~-~a~~ 225 (594)
|+..|.++++++|.++.+++.+|.+|..+|++++|+.+|+++++++|.+..++..++ .+..
T Consensus 93 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 93 AIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998 5443
No 78
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.15 E-value=5.4e-12 Score=133.44 Aligned_cols=180 Identities=21% Similarity=0.280 Sum_probs=133.3
Q ss_pred hccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHH------------hcccc
Q 007653 47 MKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKK------------QGNEL 113 (594)
Q Consensus 47 mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~-~~~~~el~aa~~~~~a~~~~~~~~a~~l~~------------~Gn~~ 113 (594)
.+..+.++....++.+....|........... .....+++.+...+...+...++....+.. +|..+
T Consensus 188 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (450)
T 2y4t_A 188 IKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL 267 (450)
T ss_dssp HHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544333333222222111 011223445555555555555555544433 49999
Q ss_pred cccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhh
Q 007653 114 YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI 193 (594)
Q Consensus 114 ~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~l 193 (594)
+..|+|++|+.+|.+++++.|.++. ....+|.+++.+|.+.|+|++|+..|+++++++|+++.+|+.+|.+|..+
T Consensus 268 ~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 342 (450)
T 2y4t_A 268 IRDGRYTDATSKYESVMKTEPSIAE-----YTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIE 342 (450)
T ss_dssp HHHTCHHHHHHHHHHHHHHCCSSHH-----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhcCCcchH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 9999999999999999999888632 11236889999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653 194 GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 231 (594)
Q Consensus 194 g~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~ 231 (594)
|++++|+.+|+++++++|++..++..++.+...+++..
T Consensus 343 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 380 (450)
T 2y4t_A 343 EMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQ 380 (450)
T ss_dssp TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999888776543
No 79
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.14 E-value=2.1e-12 Score=120.85 Aligned_cols=140 Identities=16% Similarity=0.078 Sum_probs=115.0
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCcee-eeccccch
Q 007653 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSC-YLKTKQYD 163 (594)
Q Consensus 85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~-~~klg~y~ 163 (594)
++.+...+...+...++.+..+..+|.++...|++++|+..|++++...| ++. .+..++.+ +...++..
T Consensus 22 ~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~---------~~~~~~~~~~~~~~~~~ 91 (176)
T 2r5s_A 22 HAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS---------YKSLIAKLELHQQAAES 91 (176)
T ss_dssp HHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH---------HHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH---------HHHHHHHHHHHhhcccc
Confidence 44566667777777888899999999999999999999999999999988 542 22223322 22334556
Q ss_pred hhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC--ChHHHHHhHHHHHhhhccCCC
Q 007653 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD--GTIADVLRDAKEILMKEDGHH 234 (594)
Q Consensus 164 eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~--~~a~~~l~~a~~~l~~~~~a~ 234 (594)
+|+..++++++++|+++.+++++|.+|...|++++|+..|+++++++|++ ..++..++.+...+++...+.
T Consensus 92 ~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 92 PELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 68999999999999999999999999999999999999999999999986 558999999988887655433
No 80
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.13 E-value=8.2e-12 Score=118.74 Aligned_cols=105 Identities=16% Similarity=0.145 Sum_probs=97.3
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch-
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV- 180 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~- 180 (594)
.+..+.++|.+++..|+|++|+.+|.+++.++|.+. .+|+++|.||..+|+|++|+.+|++++++.|.+.
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 106 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA---------VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQL 106 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSE
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch---------HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccH
Confidence 467899999999999999999999999999999884 4899999999999999999999999999776655
Q ss_pred ---------------HHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653 181 ---------------KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215 (594)
Q Consensus 181 ---------------ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~ 215 (594)
.+++++|.+|..+|++++|+.+|+++++++|++..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 107 IDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp EECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 99999999999999999999999999999998644
No 81
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.13 E-value=9e-12 Score=127.17 Aligned_cols=120 Identities=12% Similarity=-0.008 Sum_probs=103.5
Q ss_pred chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCcee----eeccccchhhhhhcceeeee
Q 007653 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSC----YLKTKQYDECIKVGSEVLAY 175 (594)
Q Consensus 100 ~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~----~~klg~y~eAi~~~~~AL~l 175 (594)
+...+.+..+|.++.+.|++++|+..|+++++..|... +.+++.+ +...|+|++|+..|+++++.
T Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-----------~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~ 195 (291)
T 3mkr_A 127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT-----------LTQLATAWVSLAAGGEKLQDAYYIFQEMADK 195 (291)
T ss_dssp CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----------HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH-----------HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 56678899999999999999999999999999987762 2344333 23458999999999999999
Q ss_pred cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007653 176 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 230 (594)
Q Consensus 176 dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~ 230 (594)
+|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.++.+++.+...+++.
T Consensus 196 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~ 250 (291)
T 3mkr_A 196 CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKP 250 (291)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999887776543
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.13 E-value=1.9e-12 Score=118.40 Aligned_cols=163 Identities=13% Similarity=0.061 Sum_probs=127.3
Q ss_pred hhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHH
Q 007653 46 NMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQ 124 (594)
Q Consensus 46 ~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~-~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~ 124 (594)
.....+.++....++.+....|+.......... .....+++.+...+...+...+.....+..+|..++..|+|++|+.
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 97 (186)
T 3as5_A 18 HAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVP 97 (186)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH
Confidence 334444555555555554444443333222211 1122344556666666666677778899999999999999999999
Q ss_pred HHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcc
Q 007653 125 KYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLS 204 (594)
Q Consensus 125 ~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~le 204 (594)
+|.+++...|..+ .++.++|.+|...|+|++|+..+.++++++|.++.+++.+|.+|...|++++|+.+|+
T Consensus 98 ~~~~~~~~~~~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 98 LLIKVAEANPINF---------NVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcCcHhH---------HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999988874 3789999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCChHH
Q 007653 205 NAHEVSPDDGTIA 217 (594)
Q Consensus 205 kAl~l~P~~~~a~ 217 (594)
+++.++|++....
T Consensus 169 ~~~~~~~~~~~~~ 181 (186)
T 3as5_A 169 KANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHCCCGGG
T ss_pred HHHHcCCCchhhH
Confidence 9999999876543
No 83
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.12 E-value=3.9e-12 Score=127.62 Aligned_cols=186 Identities=13% Similarity=0.079 Sum_probs=142.1
Q ss_pred HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc
Q 007653 39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG 117 (594)
Q Consensus 39 l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~-~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g 117 (594)
++..+...+...+.++....++.+....|........... .....++..+...+...+...+.....+..+|..+...|
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence 4555555566666666666666655555554443332211 112234556677777777777888899999999999999
Q ss_pred cchhHHHHHHHhhhccccccccccceeeeeecccC--------------ce-eeeccccchhhhhhcceeeeecccchHH
Q 007653 118 RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNS--------------MS-CYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (594)
Q Consensus 118 ~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~--------------a~-~~~klg~y~eAi~~~~~AL~ldP~~~ka 182 (594)
+|++|+..|.+++...|.... ++..+ +. ++...|++++|+..++++++++|.++.+
T Consensus 104 ~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 174 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQYEQ---------LGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL 174 (327)
T ss_dssp CHHHHHHHHHHHHHTSTTTTT---------C--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred CHHHHHHHHHHHHHhCCccHH---------HHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Confidence 999999999999999988754 34444 55 7889999999999999999999999999
Q ss_pred HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653 183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 233 (594)
Q Consensus 183 ~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a 233 (594)
++.+|.+|...|++++|+..|++++.++|++..++..++.+....++...+
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999999999999888887665543
No 84
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.12 E-value=2.7e-12 Score=121.55 Aligned_cols=142 Identities=11% Similarity=-0.043 Sum_probs=124.0
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecc-ccch
Q 007653 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-KQYD 163 (594)
Q Consensus 85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl-g~y~ 163 (594)
++.+...+...+...+..+..+..+|..+...|+|++|+.+|.+++++.|... .++.+++.+|... |+|+
T Consensus 24 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~l~~~~~~~~~~~~ 94 (225)
T 2vq2_A 24 YRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA---------EINNNYGWFLCGRLNRPA 94 (225)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHTTTCCHH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh---------HHHHHHHHHHHHhcCcHH
Confidence 34455555555555666688999999999999999999999999999998874 3789999999999 9999
Q ss_pred hhhhhcceeee--ecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCC
Q 007653 164 ECIKVGSEVLA--YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHG 235 (594)
Q Consensus 164 eAi~~~~~AL~--ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~ 235 (594)
+|+..++++++ .+|.+..+++.+|.+|...|++++|+..|+++++++|++..++..++.+....++...+..
T Consensus 95 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 95 ESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp HHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999 7788899999999999999999999999999999999999999999999888876654433
No 85
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.12 E-value=6.7e-12 Score=128.14 Aligned_cols=128 Identities=11% Similarity=0.081 Sum_probs=105.2
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhc--ccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecccc
Q 007653 84 EIATMRARIDAQMNYEFNAAKMLKKQG--NELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ 161 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~~~a~~l~~~G--n~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~ 161 (594)
+++.+...+...+...++........+ +.+...|+|++|+.+|+++++..|.++ .+|+++|.||.++|+
T Consensus 145 ~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~---------~~~~~la~~~~~~g~ 215 (291)
T 3mkr_A 145 RLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTL---------LLLNGQAACHMAQGR 215 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCH---------HHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcH---------HHHHHHHHHHHHcCC
Confidence 344566666666665555443332222 444567999999999999999999874 489999999999999
Q ss_pred chhhhhhcceeeeecccchHHHHHhccchhhhhhHHH-HhhhcccccccCCCCChHHHHH
Q 007653 162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEE-AVSDLSNAHEVSPDDGTIADVL 220 (594)
Q Consensus 162 y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~e-Ai~~lekAl~l~P~~~~a~~~l 220 (594)
|++|+..|+++|+++|+++.+++++|.++..+|++++ +..+++++++++|+++.+....
T Consensus 216 ~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~ 275 (291)
T 3mkr_A 216 WEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYR 275 (291)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 9999999999999999999999999999999999987 5689999999999999876643
No 86
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.10 E-value=8.4e-13 Score=121.10 Aligned_cols=110 Identities=7% Similarity=-0.036 Sum_probs=99.5
Q ss_pred HHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhh
Q 007653 123 LQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSD 202 (594)
Q Consensus 123 i~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~ 202 (594)
-..|++++.++|.+.. +++++|.+++..|+|++|+..|++++.++|+++.+|+.+|.+|..+|+|++|+.+
T Consensus 7 ~~~~~~al~~~p~~~~---------~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 77 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLE---------QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHS 77 (148)
T ss_dssp CCSHHHHTTCCHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhHHHHHcCCHhhHH---------HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3468899999998843 7899999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653 203 LSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (594)
Q Consensus 203 lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i 241 (594)
|++++.++|+++.++..++.+...+++...+...+...+
T Consensus 78 ~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 78 YSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999988776655554444
No 87
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.09 E-value=5.2e-12 Score=122.98 Aligned_cols=139 Identities=10% Similarity=-0.004 Sum_probs=123.5
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164 (594)
Q Consensus 85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e 164 (594)
++.+...+...+...+..+..+..+|..++..|+|++|+.+|.+++++.|... .++.+++.+|...|+|++
T Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~la~~~~~~g~~~~ 123 (252)
T 2ho1_A 53 TEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA---------RVLNNYGGFLYEQKRYEE 123 (252)
T ss_dssp TGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH---------HHHHHHHHHHHHHhHHHH
Confidence 34455556666666677788999999999999999999999999999988874 378999999999999999
Q ss_pred hhhhcceeee--ecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007653 165 CIKVGSEVLA--YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 232 (594)
Q Consensus 165 Ai~~~~~AL~--ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~ 232 (594)
|+..|++++. .+|.++.+++.+|.+|...|++++|+.+|++++.++|.+..++..++.+....++...
T Consensus 124 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 124 AYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999 8899999999999999999999999999999999999999999999998887765543
No 88
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.08 E-value=8.4e-12 Score=138.35 Aligned_cols=130 Identities=7% Similarity=-0.040 Sum_probs=118.3
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccc
Q 007653 83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162 (594)
Q Consensus 83 ~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y 162 (594)
.+++.+...+.+.+...++.+..+..+|..++..|+|++|+.+|+++++++|.++. +|+++|.||.++|+|
T Consensus 37 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~la~~~~~~g~~ 107 (568)
T 2vsy_A 37 GDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPG---------IALWLGHALEDAGQA 107 (568)
T ss_dssp TCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHcCCH
Confidence 34567778888888888888999999999999999999999999999999998854 899999999999999
Q ss_pred hhhhhhcceeeeecccchHHHHHhccchhhh---hhHHHHhhhcccccccCCCCChHHHHHh
Q 007653 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDI---GRLEEAVSDLSNAHEVSPDDGTIADVLR 221 (594)
Q Consensus 163 ~eAi~~~~~AL~ldP~~~ka~~~rg~al~~l---g~~~eAi~~lekAl~l~P~~~~a~~~l~ 221 (594)
++|+..|+++++++|++..+++++|.+|..+ |++++|+..|+++++++|++...+..+.
T Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 108 EAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 9999999999999999999999999999999 9999999999999999998765554433
No 89
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.07 E-value=2.6e-12 Score=135.91 Aligned_cols=206 Identities=9% Similarity=0.079 Sum_probs=148.4
Q ss_pred HHHHHHhcChh----HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhhc-CChHHHHHHHHhhhhcccccchH
Q 007653 28 RIQQQMMANPE----LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLAN-ASPEEIATMRARIDAQMNYEFNA 102 (594)
Q Consensus 28 r~~~~m~~~p~----l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~~-~~~~el~aa~~~~~a~~~~~~~~ 102 (594)
.+...+..+|+ +...+...++..+.++....++.+....|............ ....++..+...+...+...+..
T Consensus 14 ~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 93 (450)
T 2y4t_A 14 GTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF 93 (450)
T ss_dssp ---------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 33344444553 34445566667777777777777665556554444333111 12234566777788888888888
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhcccccc---cccc---ceeeeeecccCceeeeccccchhhhhhcceeeeec
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIH---SSEG---RTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD 176 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~---~~e~---~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ld 176 (594)
+..+..+|..+...|+|++|+..|.+++++.|... .... .......++++|.+|...|+|++|+..|+++++++
T Consensus 94 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 173 (450)
T 2y4t_A 94 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC 173 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999988764 2000 00000013455778999999999999999999999
Q ss_pred ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653 177 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 233 (594)
Q Consensus 177 P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a 233 (594)
|.++.+++.+|.+|..+|++++|+..|++++.++|++..++..++.+....++...+
T Consensus 174 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 174 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999999999999998888888877665543
No 90
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.06 E-value=2e-12 Score=120.12 Aligned_cols=119 Identities=10% Similarity=0.018 Sum_probs=104.4
Q ss_pred HHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHH
Q 007653 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR 185 (594)
Q Consensus 106 l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~ 185 (594)
+...+..++..|+|++|+..|.+++..+|.++. +|+++|.+|+..|+|++|+..|.++++++|+++.+++.
T Consensus 13 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 83 (177)
T 2e2e_A 13 QRDPLHQFASQQNPEAQLQALQDKIRANPQNSE---------QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAA 83 (177)
T ss_dssp SSTTTCCCC-----CCCCHHHHHHHHHCCSCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHH
T ss_pred HhhhhhhhhhccCHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 445667789999999999999999999998854 89999999999999999999999999999999999999
Q ss_pred hccc-hhhhhhH--HHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653 186 RGQA-YKDIGRL--EEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 233 (594)
Q Consensus 186 rg~a-l~~lg~~--~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a 233 (594)
+|.+ |...|++ ++|+.+|++++.++|++..++..++.+....+++..+
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 134 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQA 134 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHH
Confidence 9999 8899999 9999999999999999999999999998888766543
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.06 E-value=3.7e-12 Score=109.79 Aligned_cols=118 Identities=25% Similarity=0.300 Sum_probs=92.5
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHH
Q 007653 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL 183 (594)
Q Consensus 104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~ 183 (594)
..+..+|..++..|++++|+..|.++++..|... .++.+++.+|...+++++|+..+.+++.++|.+..++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 72 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA---------EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW 72 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch---------hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHH
Confidence 3566777788888888888888888888777653 3677788888888888888888888888888888888
Q ss_pred HHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007653 184 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 230 (594)
Q Consensus 184 ~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~ 230 (594)
+.+|.++...|++++|+..|++++.+.|.+..++..++.+....++.
T Consensus 73 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 119 (136)
T 2fo7_A 73 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 119 (136)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccH
Confidence 88888888888888888888888888888777777777776655443
No 92
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.04 E-value=2.4e-11 Score=119.13 Aligned_cols=123 Identities=13% Similarity=0.063 Sum_probs=85.0
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164 (594)
Q Consensus 85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e 164 (594)
+..+...+...+...+..+..+..+|..++..|+|++|+.+|.+++++.|.++ .+|+++|.||...|+|++
T Consensus 59 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---------~~~~~la~~~~~~g~~~~ 129 (275)
T 1xnf_A 59 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---------YAHLNRGIALYYGGRDKL 129 (275)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---------HHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc---------HHHHHHHHHHHHhccHHH
Confidence 34455555555555566666667777777777777777777777777666653 256666777777777777
Q ss_pred hhhhcceeeeecccc-----------------------------------------------------------------
Q 007653 165 CIKVGSEVLAYDAKN----------------------------------------------------------------- 179 (594)
Q Consensus 165 Ai~~~~~AL~ldP~~----------------------------------------------------------------- 179 (594)
|+..|+++++++|++
T Consensus 130 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 209 (275)
T 1xnf_A 130 AQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTS 209 (275)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhccccc
Confidence 776666666666554
Q ss_pred -----hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChH
Q 007653 180 -----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 216 (594)
Q Consensus 180 -----~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a 216 (594)
+.+++.+|.+|..+|++++|+.+|++++.++|++...
T Consensus 210 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 210 LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 4677788888888888888888888888888876553
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.03 E-value=1.1e-11 Score=120.82 Aligned_cols=110 Identities=13% Similarity=0.141 Sum_probs=98.0
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchH-
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK- 181 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k- 181 (594)
+..++.+|..++..|+|++|+..|++++...|..+. ...+++++|.||++.|+|++|+..|+++++++|++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~ 77 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI 77 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH
Confidence 467899999999999999999999999999887642 1237899999999999999999999999999999875
Q ss_pred --HHHHhccchhh------------------hhhHHHHhhhcccccccCCCCChHHH
Q 007653 182 --ALYRRGQAYKD------------------IGRLEEAVSDLSNAHEVSPDDGTIAD 218 (594)
Q Consensus 182 --a~~~rg~al~~------------------lg~~~eAi~~lekAl~l~P~~~~a~~ 218 (594)
++|.+|.+|.. .|++++|+..|+++++..|++..+..
T Consensus 78 ~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~ 134 (225)
T 2yhc_A 78 DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTD 134 (225)
T ss_dssp HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 89999999876 68999999999999999999986654
No 94
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.02 E-value=2.2e-11 Score=131.54 Aligned_cols=147 Identities=7% Similarity=-0.006 Sum_probs=129.8
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164 (594)
Q Consensus 85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e 164 (594)
+..+...+...+...+. ...+..+|..++..|+|++|+.+|.+++++.|.++. +|.++|.+|...|+|++
T Consensus 259 ~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 259 LLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPP---------TYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH---------HHHHHHHHHHhcCCHHH
Confidence 34566666666667777 889999999999999999999999999999998854 89999999999999999
Q ss_pred hhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653 165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (594)
Q Consensus 165 Ai~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i 241 (594)
|+..|+++++++|+++.+++.+|.+|...|++++|+..|+++++++|++..++..++.+....++...+...+...+
T Consensus 329 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 329 AKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888877665544444433
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.02 E-value=1.9e-11 Score=105.18 Aligned_cols=117 Identities=24% Similarity=0.348 Sum_probs=102.8
Q ss_pred HHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhh
Q 007653 87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166 (594)
Q Consensus 87 aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi 166 (594)
.+...+...+...+.....+..+|..++..|++++|+.+|.+++...|... .++.+++.+|...|+|++|+
T Consensus 19 ~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~ 89 (136)
T 2fo7_A 19 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA---------EAWYNLGNAYYKQGDYDEAI 89 (136)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch---------HHHHHHHHHHHHhcCHHHHH
Confidence 344444444444555677889999999999999999999999999988774 37889999999999999999
Q ss_pred hhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007653 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212 (594)
Q Consensus 167 ~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~ 212 (594)
..+.+++.++|.+..+++.+|.+|...|++++|+..|++++.++|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 90 EYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999999999999999886
No 96
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.02 E-value=1.3e-11 Score=132.22 Aligned_cols=141 Identities=13% Similarity=0.078 Sum_probs=109.1
Q ss_pred HHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhh
Q 007653 86 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 165 (594)
Q Consensus 86 ~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eA 165 (594)
+.+...+...+...+.....+..+|..++..|+|++|+..|.++++..|.++. +|+++|.+|.+.|+|++|
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPE---------VPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSH---------HHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHH---------HHHHHHHHHHHCCCHHHH
Confidence 34555555555566666777888888888888888888888888888777643 678888888888888888
Q ss_pred hhhcceeeeecccchH------HHHHhccchhh---hhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCC
Q 007653 166 IKVGSEVLAYDAKNVK------ALYRRGQAYKD---IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHG 235 (594)
Q Consensus 166 i~~~~~AL~ldP~~~k------a~~~rg~al~~---lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~ 235 (594)
+..|.++++++|++.. +++.+|.+|.. .|++++|+.+|++++.++|++..++..++.+....++...+..
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHH
Confidence 8888888888887754 88888888888 8888888888888888888888888888888777766554433
No 97
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.01 E-value=6.1e-12 Score=113.55 Aligned_cols=109 Identities=10% Similarity=0.026 Sum_probs=95.9
Q ss_pred HHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhc
Q 007653 124 QKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDL 203 (594)
Q Consensus 124 ~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~l 203 (594)
..|.+++.++|.+.. .++++|.++++.|+|++|+..|++++.++|+++.+|+.+|.+|..+|+|++|+.+|
T Consensus 5 ~~l~~al~~~p~~~~---------~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 75 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLE---------QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSY 75 (142)
T ss_dssp ----CCTTCCHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHcCCHHHHH---------HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 568889999888743 78999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653 204 SNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (594)
Q Consensus 204 ekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i 241 (594)
++++.++|+++.++..++.+...+++...+...+...+
T Consensus 76 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 76 SYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999988776655555444
No 98
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.01 E-value=3e-11 Score=132.79 Aligned_cols=138 Identities=17% Similarity=0.170 Sum_probs=116.8
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~ 163 (594)
+++.+...+...+...+..+..+..+|..+++.|++++|+..|++++++.|..+.. ......+|.+++.+|.+.|+++
T Consensus 456 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--p~~~~~~~~~l~~~~~~~g~~~ 533 (597)
T 2xpi_A 456 NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN--EKPWAATWANLGHAYRKLKMYD 533 (597)
T ss_dssp CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--SGGGHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc--hhhHHHHHHHHHHHHHHhcCHH
Confidence 34456666666666677778899999999999999999999999999985431100 0001347899999999999999
Q ss_pred hhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007653 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 223 (594)
Q Consensus 164 eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a 223 (594)
+|+..|+++++++|+++.+|+.+|.+|...|++++|+.+|+++++++|++..++..++.+
T Consensus 534 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 534 AAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998888765
No 99
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.00 E-value=2.2e-11 Score=105.27 Aligned_cols=100 Identities=12% Similarity=0.079 Sum_probs=87.6
Q ss_pred hhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHH
Q 007653 120 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEA 199 (594)
Q Consensus 120 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eA 199 (594)
.+|+..|.++++.+|.++. +|+++|.+|+..|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|
T Consensus 2 ~~a~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 72 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNML---------LRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGA 72 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 5789999999999998854 8999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccCCCCC--hHHHHHhHHHHHhh
Q 007653 200 VSDLSNAHEVSPDDG--TIADVLRDAKEILM 228 (594)
Q Consensus 200 i~~lekAl~l~P~~~--~a~~~l~~a~~~l~ 228 (594)
+.+|++++.++|.+. .+...+..+...++
T Consensus 73 ~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 73 RQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHhc
Confidence 999999999998643 44445555444443
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.99 E-value=3.3e-11 Score=122.35 Aligned_cols=176 Identities=7% Similarity=-0.069 Sum_probs=142.7
Q ss_pred chHHHHHHHHhcC-hh-HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccc
Q 007653 24 DDFARIQQQMMAN-PE-LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEF 100 (594)
Q Consensus 24 ~~l~r~~~~m~~~-p~-l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~-~~~~~~el~aa~~~~~a~~~~~~ 100 (594)
+.+..+....+-+ ++ ++..|...+...+.++....++.+....|+......... ......+++.|...+.......+
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p 182 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ 182 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc
Confidence 3444444444332 23 666677778888888888888888777777665544332 11233455678888888888888
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc-
Q 007653 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN- 179 (594)
Q Consensus 101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~- 179 (594)
+....+...+..+...+++.+|+..|++++..+|.++. +++++|.+|...|+|++|+..|.++++++|++
T Consensus 183 ~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~---------~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~ 253 (287)
T 3qou_A 183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAA---------LATQLALQLHQVGRNEEALELLFGHLRXDLTAA 253 (287)
T ss_dssp SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG
T ss_pred chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHH---------HHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 87888888888899999999999999999999999854 89999999999999999999999999999999
Q ss_pred -hHHHHHhccchhhhhhHHHHhhhcccccc
Q 007653 180 -VKALYRRGQAYKDIGRLEEAVSDLSNAHE 208 (594)
Q Consensus 180 -~ka~~~rg~al~~lg~~~eAi~~lekAl~ 208 (594)
..++.+++.+|..+|++++|+..|++++.
T Consensus 254 ~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 254 DGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp GGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999999999998864
No 101
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.99 E-value=7.8e-12 Score=126.96 Aligned_cols=130 Identities=12% Similarity=-0.067 Sum_probs=108.4
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecc-ccchhhhhhcceeeeecccc
Q 007653 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-KQYDECIKVGSEVLAYDAKN 179 (594)
Q Consensus 101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl-g~y~eAi~~~~~AL~ldP~~ 179 (594)
..+..+.++|+++...|+|++|+.+|.+++++.+.... ......+|.|+|.+|... |+|++|+.+|++||++.|.+
T Consensus 75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~---~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~ 151 (292)
T 1qqe_A 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ---FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD 151 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC
Confidence 45789999999999999999999999999999876421 001134789999999995 99999999999999999865
Q ss_pred ------hHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh-------HHHHHhHHHHHhhhccCC
Q 007653 180 ------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT-------IADVLRDAKEILMKEDGH 233 (594)
Q Consensus 180 ------~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~-------a~~~l~~a~~~l~~~~~a 233 (594)
..+++++|.+|..+|+|++|+.+|++++.+.|++.. ++..++.+...+++...+
T Consensus 152 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 218 (292)
T 1qqe_A 152 QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAA 218 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHH
Confidence 678999999999999999999999999999998754 456677777766655433
No 102
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.99 E-value=2.3e-11 Score=133.63 Aligned_cols=147 Identities=10% Similarity=-0.051 Sum_probs=125.8
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~ 163 (594)
+++.+...+...+...+.....+..+|..+.+.|++++|+.+|.+++++.|.++ .+|.+++.+|.+.|+++
T Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~ 492 (597)
T 2xpi_A 422 EHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDP---------LLLNELGVVAFNKSDMQ 492 (597)
T ss_dssp CHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCH---------HHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---------HHHHHHHHHHHHhCCHH
Confidence 344566666666666677788899999999999999999999999999888874 37999999999999999
Q ss_pred hhhhhcceeeee------cccc-hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCC
Q 007653 164 ECIKVGSEVLAY------DAKN-VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGP 236 (594)
Q Consensus 164 eAi~~~~~AL~l------dP~~-~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~ 236 (594)
+|+..|++++++ +|++ ..+|+.+|.+|...|++++|+..|+++++++|++..++..++.+....++.+.+...
T Consensus 493 ~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 572 (597)
T 2xpi_A 493 TAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITH 572 (597)
T ss_dssp HHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999988 6665 789999999999999999999999999999999999999999999888776654444
Q ss_pred ccc
Q 007653 237 RGL 239 (594)
Q Consensus 237 ~~~ 239 (594)
++.
T Consensus 573 ~~~ 575 (597)
T 2xpi_A 573 LHE 575 (597)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 103
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.98 E-value=2.1e-11 Score=112.28 Aligned_cols=87 Identities=22% Similarity=0.190 Sum_probs=81.3
Q ss_pred eeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007653 146 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 225 (594)
Q Consensus 146 ~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~ 225 (594)
...|+++|.+|++.|+|++|+..|+++|+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..++..++.+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44788999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhhhccC
Q 007653 226 ILMKEDG 232 (594)
Q Consensus 226 ~l~~~~~ 232 (594)
.++++..
T Consensus 91 ~~g~~~~ 97 (164)
T 3sz7_A 91 DMADYKG 97 (164)
T ss_dssp HTTCHHH
T ss_pred HccCHHH
Confidence 8765543
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.98 E-value=1.3e-11 Score=120.15 Aligned_cols=142 Identities=9% Similarity=-0.027 Sum_probs=113.4
Q ss_pred HHHHhhhhccccc---chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeee------
Q 007653 87 TMRARIDAQMNYE---FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL------ 157 (594)
Q Consensus 87 aa~~~~~a~~~~~---~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~------ 157 (594)
.+...+...+... +....++..+|.++++.|+|++|+..|+++++..|..+.. ..+++++|.||.
T Consensus 22 ~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~------~~a~~~~g~~~~~~~~~~ 95 (225)
T 2yhc_A 22 QAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI------DYVMYMRGLTNMALDDSA 95 (225)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH------HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH------HHHHHHHHHHHHhhhhhh
Confidence 3444444444333 2345789999999999999999999999999999987531 124566666665
Q ss_pred ------------ccccchhhhhhcceeeeecccchHHH-----------------HHhccchhhhhhHHHHhhhcccccc
Q 007653 158 ------------KTKQYDECIKVGSEVLAYDAKNVKAL-----------------YRRGQAYKDIGRLEEAVSDLSNAHE 208 (594)
Q Consensus 158 ------------klg~y~eAi~~~~~AL~ldP~~~ka~-----------------~~rg~al~~lg~~~eAi~~lekAl~ 208 (594)
..|++++|+..|+++|+.+|++..++ +.+|.+|...|+|++|+..|+++++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 175 (225)
T 2yhc_A 96 LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLR 175 (225)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 47899999999999999999987654 6789999999999999999999999
Q ss_pred cCCCCC---hHHHHHhHHHHHhhhccCCC
Q 007653 209 VSPDDG---TIADVLRDAKEILMKEDGHH 234 (594)
Q Consensus 209 l~P~~~---~a~~~l~~a~~~l~~~~~a~ 234 (594)
..|+++ +++..++.+...+++...+.
T Consensus 176 ~~p~~~~~~~a~~~l~~~~~~~g~~~~A~ 204 (225)
T 2yhc_A 176 DYPDTQATRDALPLMENAYRQMQMNAQAE 204 (225)
T ss_dssp HSTTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HCcCCCccHHHHHHHHHHHHHcCCcHHHH
Confidence 999986 67888898888887765443
No 105
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.98 E-value=5.3e-11 Score=127.36 Aligned_cols=140 Identities=11% Similarity=0.084 Sum_probs=121.3
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec---c
Q 007653 83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK---T 159 (594)
Q Consensus 83 ~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k---l 159 (594)
.++..+...+...+...+..+..+..+|..++..|+|++|+.+|.+++.+.|..+.. .....+|+++|.+|.. .
T Consensus 352 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 428 (514)
T 2gw1_A 352 NKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI---YVGIAPLVGKATLLTRNPTV 428 (514)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSC---SSCSHHHHHHHHHHHTSCCT
T ss_pred CCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchH---HHHHHHHHHHHHHHhhhhhc
Confidence 345566666777777777788899999999999999999999999999998887421 0112278999999999 9
Q ss_pred ccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007653 160 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 225 (594)
Q Consensus 160 g~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~ 225 (594)
|+|++|+..|++++.++|+++.+++.+|.+|...|++++|+.+|+++++++|++..++..+.....
T Consensus 429 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 494 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEA 494 (514)
T ss_dssp THHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998887766544
No 106
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.96 E-value=2.8e-11 Score=126.10 Aligned_cols=116 Identities=10% Similarity=-0.079 Sum_probs=103.0
Q ss_pred HHHHHHHHhhhhcccccchH---------------HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeee
Q 007653 83 EEIATMRARIDAQMNYEFNA---------------AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLA 147 (594)
Q Consensus 83 ~el~aa~~~~~a~~~~~~~~---------------a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~ 147 (594)
.++..|...|.+.+...+.. +..+.++|.++++.|+|++|+.+|.++|+++|.++ .
T Consensus 161 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~---------~ 231 (336)
T 1p5q_A 161 GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE---------K 231 (336)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------H
T ss_pred CCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---------H
Confidence 35667777777777777666 68999999999999999999999999999999984 4
Q ss_pred ecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHh-hhccccc
Q 007653 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV-SDLSNAH 207 (594)
Q Consensus 148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi-~~lekAl 207 (594)
+|+++|.||+.+|+|++|+.+|+++|+++|++..+++.++.++..+|++++|. ..|++.+
T Consensus 232 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 232 GLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999994 4554443
No 107
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.96 E-value=8e-11 Score=119.47 Aligned_cols=129 Identities=15% Similarity=0.128 Sum_probs=99.0
Q ss_pred HHHHHHhhhhcccccc------hHHHHHHHhccccccc-ccchhHHHHHHHhhhccccccccccceeeeeecccCceeee
Q 007653 85 IATMRARIDAQMNYEF------NAAKMLKKQGNELYSE-GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL 157 (594)
Q Consensus 85 l~aa~~~~~a~~~~~~------~~a~~l~~~Gn~~~~~-g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~ 157 (594)
++.+...+.+.+...+ ..+..+.++|.++... |+|++|+.+|++++++.|.... ......+|.++|.+|.
T Consensus 93 ~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~---~~~~~~~~~~lg~~~~ 169 (292)
T 1qqe_A 93 SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS---VALSNKCFIKCADLKA 169 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHHHH
Confidence 3345444555444332 2467899999999996 9999999999999999886521 0011347899999999
Q ss_pred ccccchhhhhhcceeeeecccchH-------HHHHhccchhhhhhHHHHhhhcccccccCCCCChH
Q 007653 158 KTKQYDECIKVGSEVLAYDAKNVK-------ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 216 (594)
Q Consensus 158 klg~y~eAi~~~~~AL~ldP~~~k-------a~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a 216 (594)
++|+|++|+.+|+++++++|++.. +|+++|.+|..+|++++|+.+|++++.++|++...
T Consensus 170 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 170 LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 999999999999999999987643 68999999999999999999999999999987654
No 108
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.95 E-value=1.9e-11 Score=132.15 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=88.2
Q ss_pred HHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhh
Q 007653 86 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 165 (594)
Q Consensus 86 ~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eA 165 (594)
..+...+...+...+.....+..+|.+++..|+|++|+..|.+++++.|.++. +|.++|.+|...|+|++|
T Consensus 327 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~g~~~~A 397 (537)
T 3fp2_A 327 KNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPE---------VPTFFAEILTDRGDFDTA 397 (537)
T ss_dssp HHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH---------HHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHhCCHHHH
Confidence 34444455555555555566666666666666666666666666666666532 566666666666666666
Q ss_pred hhhcceeeeecccchHH------HHHhccchhhh----------hhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 166 IKVGSEVLAYDAKNVKA------LYRRGQAYKDI----------GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 166 i~~~~~AL~ldP~~~ka------~~~rg~al~~l----------g~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
+..|+++++++|++... ++.+|.+|... |++++|+.+|+++++++|++..++..++.+....++
T Consensus 398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 398 IKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEK 477 (537)
T ss_dssp HHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence 66666666666654433 34445666666 777777777777777777777777777777666665
Q ss_pred ccCCC
Q 007653 230 EDGHH 234 (594)
Q Consensus 230 ~~~a~ 234 (594)
...+.
T Consensus 478 ~~~A~ 482 (537)
T 3fp2_A 478 IDEAI 482 (537)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
No 109
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.94 E-value=1.8e-11 Score=114.63 Aligned_cols=96 Identities=15% Similarity=0.100 Sum_probs=89.0
Q ss_pred ecccCceeeeccccchhhhhhcceeeeeccc-------chH-----HHHHhccchhhhhhHHHHhhhccccccc------
Q 007653 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAK-------NVK-----ALYRRGQAYKDIGRLEEAVSDLSNAHEV------ 209 (594)
Q Consensus 148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~-------~~k-----a~~~rg~al~~lg~~~eAi~~lekAl~l------ 209 (594)
.+.++|.++++.|+|++|+..|++||+++|+ +.. +|+++|.|+..+|+|++|+.+|++||++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 5688999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred -CCCCChHH----HHHhHHHHHhhhccCCCCCccchHHH
Q 007653 210 -SPDDGTIA----DVLRDAKEILMKEDGHHGPRGLLIEE 243 (594)
Q Consensus 210 -~P~~~~a~----~~l~~a~~~l~~~~~a~~~~~~~iee 243 (594)
+|++..+| .+++.+...++++.++...+.+.++-
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999 99999999999999888888877743
No 110
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.94 E-value=6.1e-11 Score=126.49 Aligned_cols=132 Identities=16% Similarity=0.011 Sum_probs=109.2
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecc----
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA---- 177 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP---- 177 (594)
.+..+..+|.+++..|+|++|+.+|++|+++.+.............+|.|+|.+|..+|+|++|+.+|++++++.+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3567888999999999999999999999998654332222222345789999999999999999999999998744
Q ss_pred ----cchHHHHHhccchhhh--hhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653 178 ----KNVKALYRRGQAYKDI--GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 233 (594)
Q Consensus 178 ----~~~ka~~~rg~al~~l--g~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a 233 (594)
..+..+.++|.++..+ ++|++|+.+|++|++++|+++.++..++.+...+......
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~ 191 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPS 191 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHH
Confidence 5678899999888765 5799999999999999999999999999988777665443
No 111
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.93 E-value=2.3e-11 Score=118.80 Aligned_cols=142 Identities=15% Similarity=0.072 Sum_probs=117.8
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee---
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--- 175 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l--- 175 (594)
.+..+..+..+|..++..|+|++|+.+|.+++++...... ........++.++|.+|...|+|++|+..|.+++.+
T Consensus 39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 117 (283)
T 3edt_B 39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLG-KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 117 (283)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3667889999999999999999999999999987511100 000112458999999999999999999999999998
Q ss_pred -----cccchHHHHHhccchhhhhhHHHHhhhccccccc--------CCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653 176 -----DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV--------SPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (594)
Q Consensus 176 -----dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l--------~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i 241 (594)
+|....+++++|.+|..+|++++|+.+|++++.+ +|....++..++.+....++...+.......+
T Consensus 118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5889999999999999999999999999999998 67777888899999888887766555554444
No 112
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.92 E-value=1.3e-10 Score=98.29 Aligned_cols=90 Identities=10% Similarity=0.061 Sum_probs=82.6
Q ss_pred ecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC------ChHHHHHh
Q 007653 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLR 221 (594)
Q Consensus 148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~------~~a~~~l~ 221 (594)
+|+++|.+|+..|+|++|+..|+++++++|+++.+++++|.+|..+|+|++|+.+|+++++++|++ ..++..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 85 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLE 85 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999999999998 78888889
Q ss_pred HHHHHhhhccCCCCCc
Q 007653 222 DAKEILMKEDGHHGPR 237 (594)
Q Consensus 222 ~a~~~l~~~~~a~~~~ 237 (594)
.+...++....+....
T Consensus 86 ~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 86 LAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHCCCCCSSSS
T ss_pred HHHHHHHhHhhhHhHH
Confidence 9988888766555443
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.92 E-value=1.8e-11 Score=114.36 Aligned_cols=125 Identities=17% Similarity=0.125 Sum_probs=106.2
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka 182 (594)
.+.+..+|..++..|+|++|+..|+++++.+|.++. +++++|.+|...|++++|+..|++++.++| ++..
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~ 75 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGD---------VKLAKADCLLETKQFELAQELLATIPLEYQ-DNSY 75 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH---------HHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH---------HHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHH
Confidence 345778899999999999999999999999999854 899999999999999999999999999999 8877
Q ss_pred HHHhccchh-hhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCc
Q 007653 183 LYRRGQAYK-DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPR 237 (594)
Q Consensus 183 ~~~rg~al~-~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~ 237 (594)
+..++.+.. ..++..+|+..|+++++++|++..++..++.+....++...+...+
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 76 KSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 766664433 3344556899999999999999999999999998887766544333
No 114
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.92 E-value=3.2e-11 Score=107.44 Aligned_cols=88 Identities=13% Similarity=0.066 Sum_probs=75.1
Q ss_pred eecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChH-------HHH
Q 007653 147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI-------ADV 219 (594)
Q Consensus 147 ~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a-------~~~ 219 (594)
.++.|+|.+|++.|+|++|+.+|++||+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++... +..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999999999999999999999999987654 444
Q ss_pred HhHHHHHhhhccCCC
Q 007653 220 LRDAKEILMKEDGHH 234 (594)
Q Consensus 220 l~~a~~~l~~~~~a~ 234 (594)
++.+...++++..+.
T Consensus 89 lg~~~~~~~~~~~A~ 103 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAV 103 (127)
T ss_dssp HHHHHHHTTCHHHHH
T ss_pred HHHHHHHcCCHHHHH
Confidence 555555555444333
No 115
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.91 E-value=6.8e-11 Score=129.42 Aligned_cols=121 Identities=7% Similarity=0.011 Sum_probs=106.0
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~ 163 (594)
+++.|...+.+.++..+..+..+.++|..+++.|+|++|+.+|+++++++|.++ .+|+++|.+|..+|+|+
T Consensus 21 ~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---------~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 21 DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI---------KGYYRRAASNMALGKFR 91 (477)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH---------HHHHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHcCCHH
Confidence 455666667777777888899999999999999999999999999999999885 48999999999999999
Q ss_pred hhhhhcceeeeecccchHHHHHhccc--hhhhhhHHHHhhhcc-----------cccccCCCC
Q 007653 164 ECIKVGSEVLAYDAKNVKALYRRGQA--YKDIGRLEEAVSDLS-----------NAHEVSPDD 213 (594)
Q Consensus 164 eAi~~~~~AL~ldP~~~ka~~~rg~a--l~~lg~~~eAi~~le-----------kAl~l~P~~ 213 (594)
+|+..|+++++++|++..+++.++.+ +...|+|++|++.++ +++.++|++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 99999999999999999999999999 889999999999999 999999876
No 116
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.89 E-value=1.7e-10 Score=120.37 Aligned_cols=103 Identities=7% Similarity=-0.027 Sum_probs=59.0
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHH
Q 007653 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL 183 (594)
Q Consensus 104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~ 183 (594)
..+.++|.++++.|+|.+|+.+|.++|+++|.+. .+|+++|.||+.+|+|++|+.+|+++++++|++..++
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~---------~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~ 301 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP---------KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIR 301 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHTTTCHHHHHHHHHHTTC---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Confidence 4899999999999999999999999999999884 4899999999999999999999999999999999999
Q ss_pred HHhccch-hhhhhHHHHhhhcccccccCCCCCh
Q 007653 184 YRRGQAY-KDIGRLEEAVSDLSNAHEVSPDDGT 215 (594)
Q Consensus 184 ~~rg~al-~~lg~~~eAi~~lekAl~l~P~~~~ 215 (594)
+.++.+. ...++++++...|.+++.+.|+++.
T Consensus 302 ~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 302 RELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 9999995 4567788899999999999998764
No 117
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.88 E-value=1.3e-10 Score=105.20 Aligned_cols=115 Identities=7% Similarity=-0.000 Sum_probs=98.9
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164 (594)
Q Consensus 85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e 164 (594)
+..+...+...+...+..+..+..+|.+++..|+|++|+.+|.+++.+.|..+ .+|+++|.||..+|+|++
T Consensus 29 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~~a~~~~~~~~~~~ 99 (166)
T 1a17_A 29 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI---------KGYYRRAASNMALGKFRA 99 (166)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---------HHHHHHHHHHHHhccHHH
Confidence 44555556666666777788999999999999999999999999999999874 389999999999999999
Q ss_pred hhhhcceeeeecccchHHHHHhccc--hhhhhhHHHHhhhcccccc
Q 007653 165 CIKVGSEVLAYDAKNVKALYRRGQA--YKDIGRLEEAVSDLSNAHE 208 (594)
Q Consensus 165 Ai~~~~~AL~ldP~~~ka~~~rg~a--l~~lg~~~eAi~~lekAl~ 208 (594)
|+..|.++++++|.+..++..++.+ +...|++++|+..++++..
T Consensus 100 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 100 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999988555555 8889999999999886543
No 118
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.87 E-value=3.4e-11 Score=117.65 Aligned_cols=110 Identities=12% Similarity=-0.011 Sum_probs=94.3
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee---
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--- 175 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l--- 175 (594)
.+..+..+..+|.+++..|+|++|+.+|.+++.+...... ........+|.++|.+|..+|+|++|+..|++++++
T Consensus 81 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 159 (283)
T 3edt_B 81 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG-KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4667889999999999999999999999999998411100 000112458999999999999999999999999999
Q ss_pred -----cccchHHHHHhccchhhhhhHHHHhhhccccccc
Q 007653 176 -----DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 209 (594)
Q Consensus 176 -----dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l 209 (594)
+|....+++++|.+|...|++++|+..|++++.+
T Consensus 160 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999986
No 119
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.86 E-value=8.6e-11 Score=98.41 Aligned_cols=91 Identities=12% Similarity=0.024 Sum_probs=62.6
Q ss_pred HHhcccccccccchhHHHHHHHhhhccccccccccceeeee-ecccCceeeeccccchhhhhhcceeeeecccchHHHHH
Q 007653 107 KKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLA-CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR 185 (594)
Q Consensus 107 ~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~-~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~ 185 (594)
.++|..++..|+|++|+..|+++++..|.+ .. +|+++|.||+.+|+|++|+..|+++++++|++..++++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVG---------KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSST---------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 345666667777777777777777776665 33 56777777777777777777777777777777766654
Q ss_pred hccchhhhhhHHHHhhhcccccccCCCCC
Q 007653 186 RGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214 (594)
Q Consensus 186 rg~al~~lg~~~eAi~~lekAl~l~P~~~ 214 (594)
+.+.+++..|++++.++|++.
T Consensus 75 --------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 --------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp --------HHHHHHHHHHCCTTHHHHCCS
T ss_pred --------HHHHHHHHHHHHHhccCcccc
Confidence 566777777777777666654
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.85 E-value=2.4e-10 Score=127.91 Aligned_cols=169 Identities=9% Similarity=-0.033 Sum_probs=138.0
Q ss_pred chhhhhhhhhcCCChhHHHHHHHHhhcCC-----------hHHHHHHHHhhhhcccccchHHHHHHHhcccccccc--cc
Q 007653 53 EDLKCAAEQLTHTPPEEVAEIGEKLANAS-----------PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG--RF 119 (594)
Q Consensus 53 e~~~~a~e~l~~~~pee~~~~~~~~~~~~-----------~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g--~y 119 (594)
+++....+.+....|+.+.....|..... ...+..+..-+...+..+++...+|..++.++.+.+ +|
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 44444555555556665555444411110 011556667777778889999999999999999999 66
Q ss_pred hhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc-cchhhhhhcceeeeecccchHHHHHhccchhhh-----
Q 007653 120 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI----- 193 (594)
Q Consensus 120 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg-~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~l----- 193 (594)
++++.+|.++|+++|.+ ..+|.+|+.++.+++ .|++++++++++|+++|.|..+|++|+.++..+
T Consensus 126 ~~el~~~~k~l~~d~~N---------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 126 ARELELCARFLEADERN---------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHhhcccc---------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 99999999999999998 459999999999999 999999999999999999999999999999886
Q ss_pred ---------hhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007653 194 ---------GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 230 (594)
Q Consensus 194 ---------g~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~ 230 (594)
+++++|++++++|+.++|+|..+|..++.+....+++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCc
Confidence 7899999999999999999999999999887776553
No 121
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.85 E-value=6e-11 Score=103.93 Aligned_cols=94 Identities=13% Similarity=0.082 Sum_probs=86.4
Q ss_pred ecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (594)
Q Consensus 148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l 227 (594)
.|.++|.++++.|+|++|+..|+++|+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..++..++.+...+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCccchH
Q 007653 228 MKEDGHHGPRGLLI 241 (594)
Q Consensus 228 ~~~~~a~~~~~~~i 241 (594)
+++..+.......+
T Consensus 86 ~~~~~A~~~~~~al 99 (126)
T 3upv_A 86 KEYASALETLDAAR 99 (126)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHH
Confidence 88776655555444
No 122
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.84 E-value=8.4e-11 Score=116.95 Aligned_cols=142 Identities=15% Similarity=0.070 Sum_probs=116.4
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeec--
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD-- 176 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ld-- 176 (594)
.+..+..+..+|..++..|+|++|+.+|.+++.+...... ........++.++|.+|...|+|++|+..|.+++++.
T Consensus 65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 143 (311)
T 3nf1_A 65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG-KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143 (311)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 5667889999999999999999999999999987521100 0001124588999999999999999999999999884
Q ss_pred ------ccchHHHHHhccchhhhhhHHHHhhhccccccc--------CCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653 177 ------AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV--------SPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 241 (594)
Q Consensus 177 ------P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l--------~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i 241 (594)
|....+++++|.+|...|++++|+.+|++++.+ +|....++..++.+....++...+.......+
T Consensus 144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 788999999999999999999999999999998 66667788888888888887766555544444
No 123
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.84 E-value=1.5e-10 Score=125.71 Aligned_cols=111 Identities=8% Similarity=-0.061 Sum_probs=96.2
Q ss_pred HHHHHHHHhhhhcccccchH---------------HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeee
Q 007653 83 EEIATMRARIDAQMNYEFNA---------------AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLA 147 (594)
Q Consensus 83 ~el~aa~~~~~a~~~~~~~~---------------a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~ 147 (594)
.++..|...|.+.+...+.. +..+.++|.++++.|+|++|+.+|.++|+++|.+. .
T Consensus 282 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~---------~ 352 (457)
T 1kt0_A 282 GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE---------K 352 (457)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------H
T ss_pred CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH---------H
Confidence 34566777777777766665 78999999999999999999999999999999984 4
Q ss_pred ecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhh
Q 007653 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSD 202 (594)
Q Consensus 148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~ 202 (594)
+|+++|.||+.+++|++|+.+|+++|+++|++..+++.++.++..++++++|...
T Consensus 353 a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 353 GLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999988754
No 124
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.84 E-value=1.1e-10 Score=119.09 Aligned_cols=133 Identities=5% Similarity=-0.175 Sum_probs=70.3
Q ss_pred HHHhhhhccc-ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhh
Q 007653 88 MRARIDAQMN-YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166 (594)
Q Consensus 88 a~~~~~a~~~-~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi 166 (594)
+...+.+.+. ..++....|...|..+...|++++|+..|+++|++.|.++. .+|.+++.++.+.|++++|+
T Consensus 83 A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--------~~~~~~~~~~~~~~~~~~A~ 154 (308)
T 2ond_A 83 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--------LVYIQYMKFARRAEGIKSGR 154 (308)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH--------HHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc--------HHHHHHHHHHHHhcCHHHHH
Confidence 4444444444 34455555555555555555566666666666555554421 14555555555555555555
Q ss_pred hhcceeeeecccchHHHHHhccchh-hhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653 167 KVGSEVLAYDAKNVKALYRRGQAYK-DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (594)
Q Consensus 167 ~~~~~AL~ldP~~~ka~~~rg~al~-~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~ 228 (594)
..|+++++++|.+..+|...+.... ..|++++|+..|+++++++|++..++..+..+...++
T Consensus 155 ~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 217 (308)
T 2ond_A 155 MIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN 217 (308)
T ss_dssp HHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 5555555555555555543333322 2455555555555555555555555555555444433
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.82 E-value=9.7e-10 Score=122.99 Aligned_cols=135 Identities=7% Similarity=-0.092 Sum_probs=124.8
Q ss_pred HHHHhhhhcccccchHHHHHHHhccccccccc----------chhHHHHHHHhhhccccccccccceeeeeecccCceee
Q 007653 87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGR----------FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY 156 (594)
Q Consensus 87 aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~----------y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~ 156 (594)
++...+...+..+++...+|..++.++...++ |++++..|.++|+.+|.+. .+|++|+.++
T Consensus 47 eal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y---------~aW~hR~w~l 117 (567)
T 1dce_A 47 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY---------GTWHHRCWLL 117 (567)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHH
Confidence 45666777788899999999999999999888 9999999999999999985 4999999999
Q ss_pred eccc--cchhhhhhcceeeeecccchHHHHHhccchhhhh-hHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007653 157 LKTK--QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 230 (594)
Q Consensus 157 ~klg--~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg-~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~ 230 (594)
.+++ +|++++++|+++|++||.|..+|+.|+.++..+| .+++++++++++++++|.|..+|..++.+...+...
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccc
Confidence 9999 6699999999999999999999999999999999 999999999999999999999999999998887544
No 126
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.81 E-value=9.3e-11 Score=116.62 Aligned_cols=110 Identities=13% Similarity=0.038 Sum_probs=93.5
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee---
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--- 175 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l--- 175 (594)
.+..+..+..+|..++..|+|++|+.+|.+++++...... ........++.++|.+|...|+|++|+..|++++++
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG-KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3667889999999999999999999999999987511100 000012457899999999999999999999999998
Q ss_pred -----cccchHHHHHhccchhhhhhHHHHhhhccccccc
Q 007653 176 -----DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 209 (594)
Q Consensus 176 -----dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l 209 (594)
+|....+++.+|.+|..+|++++|+.+|++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999974
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.81 E-value=5.9e-10 Score=112.84 Aligned_cols=134 Identities=14% Similarity=0.034 Sum_probs=107.3
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~ 163 (594)
++..|...+...+...+..+..+.++|.++++.|+|++|+..|+++++++|.+. .+|+++|.+|..+|+|+
T Consensus 19 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---------~~~~~lg~~~~~~g~~~ 89 (281)
T 2c2l_A 19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV---------KAHFFLGQCQLEMESYD 89 (281)
T ss_dssp CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH---------HHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHcCCHH
Confidence 345566667777777888899999999999999999999999999999999884 48999999999999999
Q ss_pred hhhhhcceeeeecccchHH-------HHHhc----------------------cchhhhhhHHHHhhhcccccccCCCCC
Q 007653 164 ECIKVGSEVLAYDAKNVKA-------LYRRG----------------------QAYKDIGRLEEAVSDLSNAHEVSPDDG 214 (594)
Q Consensus 164 eAi~~~~~AL~ldP~~~ka-------~~~rg----------------------~al~~lg~~~eAi~~lekAl~l~P~~~ 214 (594)
+|+.+|+++++++|++... ..+++ ...+..|++++|++.|+++++++|++.
T Consensus 90 ~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~A~~~~~~al~~~p~~~ 169 (281)
T 2c2l_A 90 EAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDG 169 (281)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHTTTSGGGTTTSCHH
T ss_pred HHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchh
Confidence 9999999999999976211 11111 011236899999999999999999987
Q ss_pred hHHHHHhHHHHH
Q 007653 215 TIADVLRDAKEI 226 (594)
Q Consensus 215 ~a~~~l~~a~~~ 226 (594)
.+...+..+...
T Consensus 170 ~~~~~l~~~~~~ 181 (281)
T 2c2l_A 170 HIRAQQACIEAK 181 (281)
T ss_dssp HHTHHHHHHHHH
T ss_pred hhhhHHHHHHHH
Confidence 766666554433
No 128
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.80 E-value=3.5e-10 Score=115.34 Aligned_cols=129 Identities=9% Similarity=-0.016 Sum_probs=111.6
Q ss_pred HHHHHhhhhcccccchHHHHHHHhcccccc-------cccc-------hhHHHHHHHhhh-ccccccccccceeeeeecc
Q 007653 86 ATMRARIDAQMNYEFNAAKMLKKQGNELYS-------EGRF-------SNALQKYLLAKK-NLQGIHSSEGRTLLLACSL 150 (594)
Q Consensus 86 ~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~-------~g~y-------~eAi~~Y~kAL~-l~p~~~~~e~~~l~~~~~~ 150 (594)
..+...+.+.+...+..+..|...|..+.. .|++ ++|+..|++++. +.|.+. .+|.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~---------~~~~ 103 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM---------LLYF 103 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCH---------HHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccH---------HHHH
Confidence 345556677777788888899999988763 4776 999999999999 688874 4899
Q ss_pred cCceeeeccccchhhhhhcceeeeecccchH-HHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007653 151 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVK-ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 223 (594)
Q Consensus 151 N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k-a~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a 223 (594)
+++.++.+.|++++|+..|+++|+++|.++. +|+.+|.++.+.|++++|+..|++|++++|.+..++.....+
T Consensus 104 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 177 (308)
T 2ond_A 104 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999997 999999999999999999999999999999887776544444
No 129
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.78 E-value=1.7e-10 Score=101.88 Aligned_cols=91 Identities=13% Similarity=0.058 Sum_probs=83.4
Q ss_pred ecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (594)
Q Consensus 148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l 227 (594)
.++++|.++++.|+|++|+..|+++++++|+++.+|+.+|.+|..+|++++|+.+|+++++++|++..++..++.+...+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhccCCCCCcc
Q 007653 228 MKEDGHHGPRG 238 (594)
Q Consensus 228 ~~~~~a~~~~~ 238 (594)
++...+.....
T Consensus 99 g~~~~A~~~~~ 109 (121)
T 1hxi_A 99 HNANAALASLR 109 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 87765443333
No 130
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.77 E-value=2.2e-10 Score=119.75 Aligned_cols=155 Identities=15% Similarity=0.097 Sum_probs=123.7
Q ss_pred HHHHHHhhhhcccc------cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec
Q 007653 85 IATMRARIDAQMNY------EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK 158 (594)
Q Consensus 85 l~aa~~~~~a~~~~------~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k 158 (594)
+..+...+...+.. ....+..+..+|..++..|+|.+|+.+|.+++++.+.... .......++.++|.||..
T Consensus 119 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~lg~~~~~ 196 (383)
T 3ulq_A 119 YLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA--YNIRLLQCHSLFATNFLD 196 (383)
T ss_dssp HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST--THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHHHHH
Confidence 44455555555443 4457889999999999999999999999999998776532 011224589999999999
Q ss_pred cccchhhhhhcceeeeecccc------hHHHHHhccchhhhhhHHHHhhhcccccc-----cC-CCCChHHHHHhHHHHH
Q 007653 159 TKQYDECIKVGSEVLAYDAKN------VKALYRRGQAYKDIGRLEEAVSDLSNAHE-----VS-PDDGTIADVLRDAKEI 226 (594)
Q Consensus 159 lg~y~eAi~~~~~AL~ldP~~------~ka~~~rg~al~~lg~~~eAi~~lekAl~-----l~-P~~~~a~~~l~~a~~~ 226 (594)
+|+|++|+..|.+++++.+.. +.+++++|.+|..+|++++|+.+|++++. .+ |....++..++.+...
T Consensus 197 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (383)
T 3ulq_A 197 LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK 276 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence 999999999999999886544 36999999999999999999999999999 46 7777888999999888
Q ss_pred hhhccCCCCCccchH
Q 007653 227 LMKEDGHHGPRGLLI 241 (594)
Q Consensus 227 l~~~~~a~~~~~~~i 241 (594)
+++...+.......+
T Consensus 277 ~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 277 LGKIDKAHEYHSKGM 291 (383)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 887765554444444
No 131
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.77 E-value=9e-10 Score=113.94 Aligned_cols=169 Identities=8% Similarity=-0.086 Sum_probs=139.9
Q ss_pred CchhhhhhhhhcCCChhHHHHHHHH--hhcCCh-HHHHHHHHhhhhcccccchHHHHHHHhcccc----ccc---ccchh
Q 007653 52 PEDLKCAAEQLTHTPPEEVAEIGEK--LANASP-EEIATMRARIDAQMNYEFNAAKMLKKQGNEL----YSE---GRFSN 121 (594)
Q Consensus 52 pe~~~~a~e~l~~~~pee~~~~~~~--~~~~~~-~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~----~~~---g~y~e 121 (594)
.++.....+.+....|+.......| +...-. ..+..+..-+...+..+++...++..++.++ ... +++.+
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 3455556666666666666555444 111111 2455566667777778899899999999888 555 78999
Q ss_pred HHHHHHHhhhccccccccccceeeeeecccCceeeeccccch--hhhhhcceeeeecccchHHHHHhccchhhhhh----
Q 007653 122 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD--ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR---- 195 (594)
Q Consensus 122 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~--eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~---- 195 (594)
++.+|.++|+.+|.+. .+|.+|+.++.++++|+ ++++.|+++|++||.|..+|+.|+.++..+++
T Consensus 129 EL~~~~~~l~~~pkny---------~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 129 EFDILEAMLSSDPKNH---------HVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp HHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred HHHHHHHHHHhCCCCH---------HHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchh
Confidence 9999999999999984 49999999999999999 99999999999999999999999999999998
Q ss_pred --HHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 196 --LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 196 --~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
++++++++++++.++|+|..++..++.+...+++
T Consensus 200 ~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC
Confidence 9999999999999999999999999998887764
No 132
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.75 E-value=6.1e-10 Score=90.80 Aligned_cols=76 Identities=32% Similarity=0.463 Sum_probs=35.9
Q ss_pred cccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHH
Q 007653 149 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK 224 (594)
Q Consensus 149 ~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~ 224 (594)
++++|.+|...++|++|+..|+++++++|+++.+++++|.+|...|++++|+.+|++++.++|++..++..++.+.
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444555555555555555555555555454444444444443
No 133
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.75 E-value=4.8e-10 Score=104.74 Aligned_cols=89 Identities=13% Similarity=0.094 Sum_probs=81.1
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccch----------hHHHHHHHhhhccccccccccceeeeeecccCc
Q 007653 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFS----------NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM 153 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~----------eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a 153 (594)
.++.+...+...+..+++.++.|.++|.++...++|+ +|+.+|++||+++|.... +|+|+|
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~---------A~~~LG 87 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE---------AVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHH---------HHHHHH
Confidence 4677888889999999999999999999999998865 999999999999999954 899999
Q ss_pred eeeeccc-----------cchhhhhhcceeeeecccchH
Q 007653 154 SCYLKTK-----------QYDECIKVGSEVLAYDAKNVK 181 (594)
Q Consensus 154 ~~~~klg-----------~y~eAi~~~~~AL~ldP~~~k 181 (594)
.+|..+| +|++|+.+|++||+++|++..
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 9999885 899999999999999999853
No 134
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.73 E-value=1.2e-10 Score=119.14 Aligned_cols=127 Identities=11% Similarity=0.003 Sum_probs=100.4
Q ss_pred chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc
Q 007653 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 179 (594)
Q Consensus 100 ~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~ 179 (594)
...+..+.++|.++...|+|++|+.+|.+++++.+.... ......+|.|+|.+|.. |+|++|+.+|+++|++.+..
T Consensus 73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~---~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~ 148 (307)
T 2ifu_A 73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT---PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE 148 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC
Confidence 345778999999999999999999999999998654321 00123578899999999 99999999999999998754
Q ss_pred ------hHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh------HHHHHhHHHHHhhhc
Q 007653 180 ------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT------IADVLRDAKEILMKE 230 (594)
Q Consensus 180 ------~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~------a~~~l~~a~~~l~~~ 230 (594)
..+++++|.+|..+|+|++|+.+|++++.+.|++.. ++..++.+...++++
T Consensus 149 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 211 (307)
T 2ifu_A 149 ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADY 211 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCH
Confidence 678999999999999999999999999998776542 334444444444443
No 135
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.73 E-value=8.2e-10 Score=101.25 Aligned_cols=92 Identities=7% Similarity=-0.050 Sum_probs=81.1
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~ 178 (594)
.+..+..+.++|.++++.|+|.+|+..|.++|+++|.++ .+|+++|.||..+|+|++|+.+|.++++++|+
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~---------~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNE---------KALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcch---------HHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 566778999999999999999999999999999999985 48999999999999999999999999999999
Q ss_pred ch-HHHHHhccchhhhhhHHHH
Q 007653 179 NV-KALYRRGQAYKDIGRLEEA 199 (594)
Q Consensus 179 ~~-ka~~~rg~al~~lg~~~eA 199 (594)
+. .+...++.+...++++.+.
T Consensus 130 ~~~~~~~~l~~~~~~~~~~~~~ 151 (162)
T 3rkv_A 130 AASVVAREMKIVTERRAEKKAD 151 (162)
T ss_dssp GHHHHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 98 6666777777666655443
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.73 E-value=9.1e-10 Score=95.42 Aligned_cols=102 Identities=11% Similarity=-0.001 Sum_probs=89.5
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164 (594)
Q Consensus 85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e 164 (594)
+..+...+...+...+.....+..+|.+++..|+|++|+.+|.+++++.|.++ .+++++|.+|..+|+|++
T Consensus 32 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~la~~~~~~~~~~~ 102 (133)
T 2lni_A 32 YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI---------KGYTRKAAALEAMKDYTK 102 (133)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch---------HHHHHHHHHHHHHhhHHH
Confidence 33455555566666666788999999999999999999999999999999874 389999999999999999
Q ss_pred hhhhcceeeeecccchHHHHHhccchhhhhh
Q 007653 165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGR 195 (594)
Q Consensus 165 Ai~~~~~AL~ldP~~~ka~~~rg~al~~lg~ 195 (594)
|+..|.++++++|.+..+++.++.++..+|+
T Consensus 103 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 103 AMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999987764
No 137
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.72 E-value=7.5e-10 Score=90.24 Aligned_cols=62 Identities=23% Similarity=0.195 Sum_probs=46.3
Q ss_pred cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccc
Q 007653 178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGL 239 (594)
Q Consensus 178 ~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~ 239 (594)
.++.+++.+|.+|...|+|++|+.+|++++.++|++..++..++.+....++...+......
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 68 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 46777888888888888888888888888888888888888888777777666554443333
No 138
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.72 E-value=5e-10 Score=117.07 Aligned_cols=111 Identities=14% Similarity=0.119 Sum_probs=97.8
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeee----
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA---- 174 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~---- 174 (594)
....+..+..+|.++...|+|++|+.+|.+++++.+.... ......++.|+|.||..+|+|++|+.+|.++++
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ---PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 5667789999999999999999999999999998775532 122345899999999999999999999999999
Q ss_pred -ec-ccchHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007653 175 -YD-AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212 (594)
Q Consensus 175 -ld-P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~ 212 (594)
.+ |..+.+++++|.+|..+|++++|+.+|++++.+.+.
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 257 SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp TTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 46 889999999999999999999999999999998543
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.70 E-value=8.7e-10 Score=94.68 Aligned_cols=103 Identities=10% Similarity=-0.059 Sum_probs=90.6
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164 (594)
Q Consensus 85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e 164 (594)
+..+...+...+...+..+..+..+|..++..|+|++|+.+|.+++.+.|.++ .+++++|.+|...++|++
T Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 98 (131)
T 2vyi_A 28 FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS---------KAYGRMGLALSSLNKHVE 98 (131)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH---------HHHHHHHHHHHHhCCHHH
Confidence 33455555555555666788999999999999999999999999999998874 388999999999999999
Q ss_pred hhhhcceeeeecccchHHHHHhccchhhhhhH
Q 007653 165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRL 196 (594)
Q Consensus 165 Ai~~~~~AL~ldP~~~ka~~~rg~al~~lg~~ 196 (594)
|+..+.++++++|++..+++.++.++..+|++
T Consensus 99 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 99 AVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999876
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.68 E-value=1.3e-09 Score=111.17 Aligned_cols=130 Identities=13% Similarity=0.042 Sum_probs=109.5
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~ 163 (594)
+++.+...+.......+... .++.+|..+++.++|.+|+.+|++++...+... ...+++++|.++..+|+++
T Consensus 117 ~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~-------~~~a~~~LG~al~~LG~~~ 188 (282)
T 4f3v_A 117 NYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL-------AGAAGVAHGVAAANLALFT 188 (282)
T ss_dssp CHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH-------HHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc-------HHHHHHHHHHHHHHCCCHH
Confidence 45567777777777778778 999999999999999999999998877532210 0237899999999999999
Q ss_pred hhhhhcceeeeec--cc-chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007653 164 ECIKVGSEVLAYD--AK-NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 222 (594)
Q Consensus 164 eAi~~~~~AL~ld--P~-~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~ 222 (594)
+|+..|++++.-. |. .+.+++++|.|+..+|+.++|+..|++++.++|+ ..++..|..
T Consensus 189 eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 189 EAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 9999999998554 65 7789999999999999999999999999999998 776666654
No 141
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.68 E-value=1.2e-09 Score=103.49 Aligned_cols=96 Identities=4% Similarity=-0.095 Sum_probs=83.0
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka 182 (594)
...+.++|.+++..|+|++|+.+|.++++++|.+. .+|+++|.||..+|+|++|+.+|.++++++|++..+
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 158 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV---------KALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccH---------HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence 37899999999999999999999999999999884 489999999999999999999999999999999999
Q ss_pred HHHhccchhhhhhHHHHh-hhccccc
Q 007653 183 LYRRGQAYKDIGRLEEAV-SDLSNAH 207 (594)
Q Consensus 183 ~~~rg~al~~lg~~~eAi-~~lekAl 207 (594)
+..++.++..++++.++. ..|.+.+
T Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 159 RNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999887 4444443
No 142
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.68 E-value=4.5e-10 Score=113.55 Aligned_cols=136 Identities=13% Similarity=0.006 Sum_probs=108.2
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceee-------ee
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL-------AY 175 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL-------~l 175 (594)
...++.+|..++..++|++|+.+|.+++.+.+..... ...+.+|.++|.+|..+|+|++|+.+|.+++ ..
T Consensus 115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~---~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 191 (293)
T 3u3w_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN 191 (293)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT---THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc
Confidence 3456678999999999999999999999976554321 1123378999999999999999999999999 44
Q ss_pred cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC------ChHHHHHhHHHHHhhhc-cCCCCCccchH
Q 007653 176 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEILMKE-DGHHGPRGLLI 241 (594)
Q Consensus 176 dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~------~~a~~~l~~a~~~l~~~-~~a~~~~~~~i 241 (594)
.+..+.+++++|.+|..+|+|++|+.+|++++.+.+.. ..++..++.+...+++. +.+...+...+
T Consensus 192 ~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 56677899999999999999999999999999987654 56788889988888743 44444444333
No 143
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.67 E-value=1.8e-09 Score=110.20 Aligned_cols=111 Identities=12% Similarity=0.012 Sum_probs=95.1
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc-
Q 007653 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN- 179 (594)
Q Consensus 101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~- 179 (594)
..+..+.++|.++.. |+|++|+.+|++++++.+.... ......++.|+|.+|.++|+|++|+.+|++++++.|.+
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 189 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER---LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME 189 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 356889999999999 9999999999999998876421 11124578999999999999999999999999987754
Q ss_pred -----hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChH
Q 007653 180 -----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 216 (594)
Q Consensus 180 -----~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a 216 (594)
..+++.+|.+|..+|++++|+.+|++++ ++|.+...
T Consensus 190 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~ 230 (307)
T 2ifu_A 190 NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGS 230 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC
Confidence 4588999999999999999999999999 99987653
No 144
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.67 E-value=1.8e-09 Score=90.41 Aligned_cols=85 Identities=21% Similarity=0.185 Sum_probs=79.5
Q ss_pred eecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCC--CChHHHHHhHHH
Q 007653 147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD--DGTIADVLRDAK 224 (594)
Q Consensus 147 ~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~--~~~a~~~l~~a~ 224 (594)
.+++++|.+|+..|+|++|+..|+++++++|.+..+++++|.+|..+|++++|+.+|+++++++|+ +..++..++.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 378999999999999999999999999999999999999999999999999999999999999999 999999999887
Q ss_pred HHh-hhcc
Q 007653 225 EIL-MKED 231 (594)
Q Consensus 225 ~~l-~~~~ 231 (594)
..+ ++.+
T Consensus 87 ~~~~~~~~ 94 (112)
T 2kck_A 87 RYIEGKEV 94 (112)
T ss_dssp TTCSSCSH
T ss_pred HHHhCCHH
Confidence 777 6544
No 145
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.66 E-value=6.7e-10 Score=96.55 Aligned_cols=102 Identities=9% Similarity=0.080 Sum_probs=85.7
Q ss_pred HHHHHhhhhcccc---cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccc
Q 007653 86 ATMRARIDAQMNY---EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162 (594)
Q Consensus 86 ~aa~~~~~a~~~~---~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y 162 (594)
+.+...+.+.+.. .+..+..+..+|.+++..|+|++|+.+|+++++++|.++. +++++|.||..+|+|
T Consensus 7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~g~~ 77 (117)
T 3k9i_A 7 AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA---------LRVFYAMVLYNLGRY 77 (117)
T ss_dssp CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH---------HHHHHHHHHHHcCCH
Confidence 3444555555555 5778899999999999999999999999999999999854 899999999999999
Q ss_pred hhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhccccc
Q 007653 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAH 207 (594)
Q Consensus 163 ~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl 207 (594)
++|+..|.+++.++|+++... .|..|+..|.+.+
T Consensus 78 ~~A~~~~~~al~~~p~~~~~~-----------~~~~ai~~~~~~l 111 (117)
T 3k9i_A 78 EQGVELLLKIIAETSDDETIQ-----------SYKQAILFYADKL 111 (117)
T ss_dssp HHHHHHHHHHHHHHCCCHHHH-----------HTHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhCCCcHHHH-----------HHHHHHHHHHHHH
Confidence 999999999999999998653 4666776666554
No 146
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.66 E-value=2.3e-10 Score=119.51 Aligned_cols=197 Identities=13% Similarity=0.040 Sum_probs=137.0
Q ss_pred HHHHhhhhhccCCCchhhhhhhhhcCCChhHHH---HHHHH--hhcCChHHHHHHHHhhhhcccc------cchHHHHHH
Q 007653 39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVA---EIGEK--LANASPEEIATMRARIDAQMNY------EFNAAKMLK 107 (594)
Q Consensus 39 l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~---~~~~~--~~~~~~~el~aa~~~~~a~~~~------~~~~a~~l~ 107 (594)
+...+...+...+.++....++......|++.. ..... .......+++.+...+...+.. .+..+..+.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 334455555566666666655555443443221 11111 0111122344455555544443 567788999
Q ss_pred HhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecccc-----------------chhhhhhcc
Q 007653 108 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ-----------------YDECIKVGS 170 (594)
Q Consensus 108 ~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~-----------------y~eAi~~~~ 170 (594)
.+|..++..|+|++|+.+|.+++++.+.... ......+|.++|.+|...|+ |++|+..|.
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGD---RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc---hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999998543211 11124588999999999999 999999999
Q ss_pred eeeeec------ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh------HHHHHhHHHHHhhhccCCCCCcc
Q 007653 171 EVLAYD------AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT------IADVLRDAKEILMKEDGHHGPRG 238 (594)
Q Consensus 171 ~AL~ld------P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~------a~~~l~~a~~~l~~~~~a~~~~~ 238 (594)
+++++. +..+.+++++|.+|...|+|++|+.+|++++.+.|.+.. ++..++.+....+++..+.....
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 998874 456779999999999999999999999999999887655 77777777777766554443333
No 147
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.66 E-value=1.7e-10 Score=102.61 Aligned_cols=128 Identities=15% Similarity=0.146 Sum_probs=102.3
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc-
Q 007653 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN- 179 (594)
Q Consensus 101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~- 179 (594)
..+..+..+|..++..|+|++|+.+|.+++++.+.... ......++.++|.+|...|+|++|+..+.+++.+.+..
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 83 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 83 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 34668899999999999999999999999998775432 11223478999999999999999999999999887653
Q ss_pred -----hHHHHHhccchhhhhhHHHHhhhcccccccCCCC------ChHHHHHhHHHHHhhhcc
Q 007653 180 -----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEILMKED 231 (594)
Q Consensus 180 -----~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~------~~a~~~l~~a~~~l~~~~ 231 (594)
..+++++|.+|..+|++++|+.+|++++.+.+.. ..++..++.+....++..
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 146 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD 146 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHH
Confidence 7789999999999999999999999999875432 345566666666665544
No 148
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.65 E-value=3.4e-09 Score=112.89 Aligned_cols=135 Identities=11% Similarity=0.017 Sum_probs=111.0
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHhcccccc---cccchhHHHHHHHhhhccccccccccceeeeeecccCce----ee
Q 007653 84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYS---EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS----CY 156 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~---~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~----~~ 156 (594)
+++.|...+.+.+...++.++.+..+|..++. .+++.+|+..|+++++++|.++. ++.+++. ++
T Consensus 153 ~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~---------~~~~l~~~~~~~~ 223 (472)
T 4g1t_A 153 QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY---------LKVLLALKLHKMR 223 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH---------HHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH---------HHHHHHHHHHHHH
Confidence 45677778888888888888888888888654 45668899999999999988753 5666654 45
Q ss_pred eccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653 157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (594)
Q Consensus 157 ~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l 227 (594)
...+++++|+..+++++.++|.++.+++++|.+|...|++++|+..|+++++++|++..++..++.+....
T Consensus 224 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~ 294 (472)
T 4g1t_A 224 EEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAK 294 (472)
T ss_dssp ------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999998876544
No 149
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.65 E-value=3.6e-09 Score=111.95 Aligned_cols=97 Identities=9% Similarity=-0.003 Sum_probs=90.8
Q ss_pred ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecc
Q 007653 98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA 177 (594)
Q Consensus 98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP 177 (594)
..+..+..+.++|.++++.|+|++|+.+|+++|+++|.++ .+|+++|.||+.+++|++|+.+|+++++++|
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~---------~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT---------KALYRRAQGWQGLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhH---------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 5667789999999999999999999999999999999884 4899999999999999999999999999999
Q ss_pred cchHHHHHhccchhhhhhHHHHhhhc
Q 007653 178 KNVKALYRRGQAYKDIGRLEEAVSDL 203 (594)
Q Consensus 178 ~~~ka~~~rg~al~~lg~~~eAi~~l 203 (594)
++..++..++.++..+++++++.+.+
T Consensus 339 ~~~~~~~~l~~~~~~~~~~~~a~k~~ 364 (370)
T 1ihg_A 339 EDKAIQAELLKVKQKIKAQKDKEKAA 364 (370)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987654
No 150
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.64 E-value=6.1e-10 Score=104.29 Aligned_cols=130 Identities=12% Similarity=-0.015 Sum_probs=99.4
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee-----
Q 007653 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY----- 175 (594)
Q Consensus 101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l----- 175 (594)
..+..+..+|..++..|+|++|+.+|.+++.+...... ......++.++|.+|...|+|++|+..|.+++.+
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 100 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP 100 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 45778899999999999999999999999985443211 1122457889999999999999999999999988
Q ss_pred -cc-cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC------hHHHHHhHHHHHhhhccCC
Q 007653 176 -DA-KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG------TIADVLRDAKEILMKEDGH 233 (594)
Q Consensus 176 -dP-~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~------~a~~~l~~a~~~l~~~~~a 233 (594)
++ ....+++++|.+|..+|++++|+.+|++++.+.+... .++..++.+....++...+
T Consensus 101 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 166 (203)
T 3gw4_A 101 EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA 166 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHH
Confidence 33 4567899999999999999999999999987654322 2335666666666655443
No 151
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.63 E-value=9.4e-10 Score=96.80 Aligned_cols=96 Identities=11% Similarity=0.024 Sum_probs=86.9
Q ss_pred eeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007653 146 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 225 (594)
Q Consensus 146 ~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~ 225 (594)
...|+++|.+|+..|+|++|+..|.+++.++|+++.+++++|.+|..+|+|++|+.+|++++.++|++..++..++.+..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCCCccchH
Q 007653 226 ILMKEDGHHGPRGLLI 241 (594)
Q Consensus 226 ~l~~~~~a~~~~~~~i 241 (594)
.++++..+.......+
T Consensus 89 ~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 89 EMESYDEAIANLQRAY 104 (137)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 9887765554444444
No 152
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.63 E-value=2.6e-09 Score=89.21 Aligned_cols=79 Identities=19% Similarity=0.392 Sum_probs=70.9
Q ss_pred cccCceeeeccccchhhhhhcceeeeecccchH-HHHHhccchhhhhhHHHHhhhcccccccCCCCChHH--HHHhHHHH
Q 007653 149 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK-ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA--DVLRDAKE 225 (594)
Q Consensus 149 ~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k-a~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~--~~l~~a~~ 225 (594)
.+++|.+|++.|+|++|+..|+++++++|+++. +++++|.+|..+|++++|+.+|+++++++|++..++ ..+..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~ 82 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILN 82 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 467888999999999999999999999999999 999999999999999999999999999999999987 55555444
Q ss_pred Hh
Q 007653 226 IL 227 (594)
Q Consensus 226 ~l 227 (594)
..
T Consensus 83 ~~ 84 (99)
T 2kc7_A 83 FY 84 (99)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 153
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.63 E-value=7.3e-10 Score=94.16 Aligned_cols=71 Identities=20% Similarity=0.306 Sum_probs=66.1
Q ss_pred eeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChH
Q 007653 146 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 216 (594)
Q Consensus 146 ~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a 216 (594)
..+|+++|.+|+..|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+.+|++++++.|.+...
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 77 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch
Confidence 34789999999999999999999999999999999999999999999999999999999999998865443
No 154
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.63 E-value=7.5e-10 Score=115.81 Aligned_cols=149 Identities=13% Similarity=0.004 Sum_probs=119.5
Q ss_pred HHHHHHhhhhcccc------cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec
Q 007653 85 IATMRARIDAQMNY------EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK 158 (594)
Q Consensus 85 l~aa~~~~~a~~~~------~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k 158 (594)
+..+...+...+.. .+..+..+..+|.+++..|+|.+|+.+|.+++++.+..... ....+.++.++|.||..
T Consensus 117 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~lg~~y~~ 194 (378)
T 3q15_A 117 YVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY--SIRTIQSLFVIAGNYDD 194 (378)
T ss_dssp HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--hhhHHHHHHHHHHHHHH
Confidence 34455444444332 45578899999999999999999999999999987754320 11235588999999999
Q ss_pred cccchhhhhhcceeeeecc------cchHHHHHhccchhhhhhHHHHhhhcccccc-----cCCCCChHHHHHhHHHHHh
Q 007653 159 TKQYDECIKVGSEVLAYDA------KNVKALYRRGQAYKDIGRLEEAVSDLSNAHE-----VSPDDGTIADVLRDAKEIL 227 (594)
Q Consensus 159 lg~y~eAi~~~~~AL~ldP------~~~ka~~~rg~al~~lg~~~eAi~~lekAl~-----l~P~~~~a~~~l~~a~~~l 227 (594)
+|+|++|+..|.+++++.+ ....+++++|.+|..+|++++|+.+|++++. .+|....++..++.+...+
T Consensus 195 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 274 (378)
T 3q15_A 195 FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKA 274 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHC
Confidence 9999999999999998743 3467899999999999999999999999999 7887788888999998888
Q ss_pred hhccCCCC
Q 007653 228 MKEDGHHG 235 (594)
Q Consensus 228 ~~~~~a~~ 235 (594)
++...+..
T Consensus 275 g~~~~A~~ 282 (378)
T 3q15_A 275 GQTQKAFQ 282 (378)
T ss_dssp TCHHHHHH
T ss_pred CCHHHHHH
Confidence 77654433
No 155
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.63 E-value=3.5e-09 Score=109.49 Aligned_cols=134 Identities=7% Similarity=-0.167 Sum_probs=122.0
Q ss_pred HHHHhhhhcccccchHHHHHHHhcccccccc--cchhHHHHHHHhhhccccccccccceeeeeecccCceee----ecc-
Q 007653 87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEG--RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY----LKT- 159 (594)
Q Consensus 87 aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g--~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~----~kl- 159 (594)
.+...+...+..+++...++..++.++...+ +|.+++..+.++|..+|.+. .+|+.|+.++ ..+
T Consensus 51 ~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y---------~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 51 RALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY---------QIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC---------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH---------HHHHHHHHHHHHHHHhcc
Confidence 3555666777788898999999999999988 99999999999999999994 4899999999 667
Q ss_pred --ccchhhhhhcceeeeecccchHHHHHhccchhhhhhHH--HHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 160 --KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLE--EAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 160 --g~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~--eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
+++++++..|+++|+++|+|..+|+.|+.++..+++++ ++++.++++++++|.|..++...+.+...++.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 78999999999999999999999999999999999999 99999999999999999999999888777654
No 156
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.62 E-value=8.8e-10 Score=113.85 Aligned_cols=140 Identities=14% Similarity=0.104 Sum_probs=115.2
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~ 178 (594)
.+..+..+..+|..++..|+|++|+.+|.+++++.+.... ......+|.++|.+|...|+|++|+..|++++.+.+.
T Consensus 183 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 259 (406)
T 3sf4_A 183 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 259 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 4556778999999999999999999999999998776532 1122347899999999999999999999999999887
Q ss_pred c------hHHHHHhccchhhhhhHHHHhhhcccccccCCCC------ChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653 179 N------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEILMKEDGHHGPRGLLI 241 (594)
Q Consensus 179 ~------~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~------~~a~~~l~~a~~~l~~~~~a~~~~~~~i 241 (594)
. ..+++.+|.+|...|++++|+.+|++++.+.+.. ..++..++.+....++...+.......+
T Consensus 260 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 260 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6 8899999999999999999999999999986654 4567778888777777665544444433
No 157
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.62 E-value=1.4e-09 Score=109.90 Aligned_cols=107 Identities=12% Similarity=0.184 Sum_probs=90.7
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc--
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-- 179 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~-- 179 (594)
.+..+.++|.+++..|+|++|+.+|.+++++....+. .......+|+|+|.+|.++|+|++|+.+|.++|++.+..
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~ 231 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD--NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc
Confidence 3567999999999999999999999999975443311 122235589999999999999999999999999988665
Q ss_pred ----hHHHHHhccchhhhhh-HHHHhhhcccccccC
Q 007653 180 ----VKALYRRGQAYKDIGR-LEEAVSDLSNAHEVS 210 (594)
Q Consensus 180 ----~ka~~~rg~al~~lg~-~~eAi~~lekAl~l~ 210 (594)
+.+|+++|.+|..+|+ +++|+.+|++|+.+.
T Consensus 232 ~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 8899999999999995 699999999998764
No 158
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.62 E-value=3.6e-09 Score=110.55 Aligned_cols=111 Identities=11% Similarity=0.056 Sum_probs=98.0
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeee----
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA---- 174 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~---- 174 (594)
....+..+..+|.++...|+|++|+.+|.+++++.+.... ......++.|+|.||..+|+|++|+..|.+++.
T Consensus 178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN---DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 4457889999999999999999999999999998654321 112345889999999999999999999999999
Q ss_pred -ecccchHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007653 175 -YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212 (594)
Q Consensus 175 -ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~ 212 (594)
.+|..+.+++++|.+|..+|++++|+.+|++++++.+.
T Consensus 255 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 255 KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred hCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999998765
No 159
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.61 E-value=3.4e-10 Score=116.99 Aligned_cols=138 Identities=16% Similarity=0.092 Sum_probs=114.5
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecccc-----------------
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ----------------- 161 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~----------------- 161 (594)
.+..+..+..+|..++..|+|++|+.+|.+++++.+.... ......++.++|.+|...|+
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a 159 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND---KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV 159 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc---ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhH
Confidence 4566889999999999999999999999999998876532 11224478999999999999
Q ss_pred ---chhhhhhcceeeee------cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh------HHHHHhHHHHH
Q 007653 162 ---YDECIKVGSEVLAY------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT------IADVLRDAKEI 226 (594)
Q Consensus 162 ---y~eAi~~~~~AL~l------dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~------a~~~l~~a~~~ 226 (594)
|++|+..|.+++.+ .|....+++++|.+|..+|++++|+.+|++++.+.|.... ++..++.+...
T Consensus 160 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 239 (406)
T 3sf4_A 160 RDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 239 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 99999999999987 5667889999999999999999999999999999887655 77788888777
Q ss_pred hhhccCCCCCccc
Q 007653 227 LMKEDGHHGPRGL 239 (594)
Q Consensus 227 l~~~~~a~~~~~~ 239 (594)
.++...+......
T Consensus 240 ~g~~~~A~~~~~~ 252 (406)
T 3sf4_A 240 LGEFETASEYYKK 252 (406)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCChHHHHHHHHH
Confidence 7766554443333
No 160
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.60 E-value=9.1e-10 Score=114.97 Aligned_cols=125 Identities=16% Similarity=0.116 Sum_probs=109.8
Q ss_pred chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee----
Q 007653 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY---- 175 (594)
Q Consensus 100 ~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l---- 175 (594)
...+..+..+|..++..|+|++|+.+|++++++.|.++. ....+|+++|.+|+..|+|++|+..|++++++
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 119 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLR-----TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM 119 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH-----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChh-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 455778889999999999999999999999999887642 11247899999999999999999999999998
Q ss_pred --cccchHHHHHhccchhhhhhHHHHhhhccccccc------CCCCChHHHHHhHHHHHhhh
Q 007653 176 --DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV------SPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 176 --dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l------~P~~~~a~~~l~~a~~~l~~ 229 (594)
+|..+.+++.+|.+|..+|++++|+.+|++++.+ .|....++..++.+...+++
T Consensus 120 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 120 NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 7889999999999999999999999999999998 45556688888888888877
No 161
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.58 E-value=4.2e-09 Score=110.66 Aligned_cols=169 Identities=9% Similarity=-0.062 Sum_probs=136.8
Q ss_pred CchhhhhhhhhcCCChhHHHHHHHHhhcC--ChHHHHHHHHhhhhcccccchHHHHHHHhccccccc-c-cchhHHHHHH
Q 007653 52 PEDLKCAAEQLTHTPPEEVAEIGEKLANA--SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE-G-RFSNALQKYL 127 (594)
Q Consensus 52 pe~~~~a~e~l~~~~pee~~~~~~~~~~~--~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~-g-~y~eAi~~Y~ 127 (594)
.++.....+.+....|+.......|...+ -...+.....-+...+..+++...++..++.++... + ++.+++.+|.
T Consensus 70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 70 SERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 34455556666666666655544441111 111244555666667778999999999999998887 7 8999999999
Q ss_pred HhhhccccccccccceeeeeecccCceeeeccccch--------hhhhhcceeeeecccchHHHHHhccchhhhhh----
Q 007653 128 LAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD--------ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR---- 195 (594)
Q Consensus 128 kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~--------eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~---- 195 (594)
++|+.+|.+. .+|.+|+.++.++++++ +++++++++|+++|.|..+|+.|+.++..+++
T Consensus 150 k~L~~dpkNy---------~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 150 GSLLPDPKNY---------HTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHTSSCTTCH---------HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHhCCCCH---------HHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccc
Confidence 9999999984 49999999999999999 99999999999999999999999999999987
Q ss_pred ---HHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 196 ---LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 196 ---~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
++++++++++++.++|+|..++..+.-+....+.
T Consensus 221 ~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 7999999999999999999999998887666543
No 162
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.58 E-value=2.1e-09 Score=106.55 Aligned_cols=110 Identities=15% Similarity=0.109 Sum_probs=84.9
Q ss_pred HHHHHHHhcccccc----cccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec----cccchhhhhhcceee
Q 007653 102 AAKMLKKQGNELYS----EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----TKQYDECIKVGSEVL 173 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~----~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k----lg~y~eAi~~~~~AL 173 (594)
.+..+..+|..+.. .+++++|+.+|+++++.. + ..+++++|.+|.. .+++++|+.+|++++
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~---------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y---------AEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC 141 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--C---------ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 46677888888888 888888888888888763 2 2367888888888 888888888888888
Q ss_pred eecccchHHHHHhccchhh----hhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007653 174 AYDAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (594)
Q Consensus 174 ~ldP~~~ka~~~rg~al~~----lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~ 226 (594)
+++ ++.+++++|.+|.. .+++++|+.+|+++++. ++..++..++.+...
T Consensus 142 ~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~ 194 (273)
T 1ouv_A 142 DLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHH 194 (273)
T ss_dssp HTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred hcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence 765 67788888888887 88888888888888776 345666777776655
No 163
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.56 E-value=2.3e-08 Score=96.56 Aligned_cols=113 Identities=11% Similarity=-0.005 Sum_probs=98.8
Q ss_pred hHHHHHHHhcccccccc----cchhHHHHHHHhhhccccccccccceeeeeecccCceeeec----cccchhhhhhccee
Q 007653 101 NAAKMLKKQGNELYSEG----RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----TKQYDECIKVGSEV 172 (594)
Q Consensus 101 ~~a~~l~~~Gn~~~~~g----~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k----lg~y~eAi~~~~~A 172 (594)
..+.++.++|..+.. + ++++|+.+|+++++. .+ ..+++++|.+|.. .+++++|+..|+++
T Consensus 48 g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--g~---------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 115 (212)
T 3rjv_A 48 GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--GS---------KSGEIVLARVLVNRQAGATDVAHAITLLQDA 115 (212)
T ss_dssp TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--TC---------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--CC---------HHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Confidence 356789999999988 7 899999999999764 34 2378999999998 88999999999999
Q ss_pred eeecc--cchHHHHHhccchhh----hhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007653 173 LAYDA--KNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (594)
Q Consensus 173 L~ldP--~~~ka~~~rg~al~~----lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~ 226 (594)
+++.| .++.+++++|.+|.. .+++++|+.+|++++++ |.++.+...|+.+...
T Consensus 116 ~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 116 ARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ 174 (212)
T ss_dssp TSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred HHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence 99988 579999999999998 88999999999999998 7788888888887654
No 164
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.55 E-value=1.1e-08 Score=106.85 Aligned_cols=165 Identities=11% Similarity=-0.000 Sum_probs=134.5
Q ss_pred CchhhhhhhhhcCCChhHHHHHHHHhhcC-------ChH----HHHHHHHhhhhcccccchHHHHHHHhccccccccc--
Q 007653 52 PEDLKCAAEQLTHTPPEEVAEIGEKLANA-------SPE----EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR-- 118 (594)
Q Consensus 52 pe~~~~a~e~l~~~~pee~~~~~~~~~~~-------~~~----el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~-- 118 (594)
.+++......+....|+.......|...+ .++ .+.....-+...+..+++...+|..++.++...++
T Consensus 46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 34556677777777787766655541111 111 13445555666677899999999999999988884
Q ss_pred chhHHHHHHHhhhccccccccccceeeeeecccCceeeecccc-chhhhhhcceeeeecccchHHHHHhccchhhh----
Q 007653 119 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ-YDECIKVGSEVLAYDAKNVKALYRRGQAYKDI---- 193 (594)
Q Consensus 119 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~-y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~l---- 193 (594)
|.+++.+|.++|+.+|.+ ..+|.+|+.++..++. +++++++++++|+++|.|..+|++|+.++..+
T Consensus 126 ~~~EL~~~~k~l~~dprN---------y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 126 WARELELCARFLEADERN---------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 899999999999999998 4599999999999999 59999999999999999999999999999988
Q ss_pred ----------hhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007653 194 ----------GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 225 (594)
Q Consensus 194 ----------g~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~ 225 (594)
+.++++++++.+++.++|+|..+|..+.-+..
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 238 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 78999999999999999999999986655543
No 165
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.54 E-value=3.7e-09 Score=106.75 Aligned_cols=107 Identities=12% Similarity=0.188 Sum_probs=89.3
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc---
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--- 178 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~--- 178 (594)
.+..+..+|..++..|+|++|+.+|.+++++....+.. ..+...+|+|+|.+|..+|+|++|+.+|++++++.+.
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~--~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc--ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 46789999999999999999999999999654332210 0011258999999999999999999999999998754
Q ss_pred ---chHHHHHhccchhhhhhHHHH-hhhcccccccC
Q 007653 179 ---NVKALYRRGQAYKDIGRLEEA-VSDLSNAHEVS 210 (594)
Q Consensus 179 ---~~ka~~~rg~al~~lg~~~eA-i~~lekAl~l~ 210 (594)
.+.+|+++|.+|..+|++++| ..+|++|+.+.
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 378999999999999999999 77899998764
No 166
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.53 E-value=6.7e-10 Score=110.59 Aligned_cols=133 Identities=17% Similarity=0.122 Sum_probs=109.6
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecccc-----------------
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ----------------- 161 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~----------------- 161 (594)
.+..+..+..+|..++..|+|++|+.+|.+++++.+.... ......++.++|.+|...|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a 155 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND---KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV 155 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence 4556788999999999999999999999999998776532 11224478999999999999
Q ss_pred ---chhhhhhcceeeee------cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh------HHHHHhHHHHH
Q 007653 162 ---YDECIKVGSEVLAY------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT------IADVLRDAKEI 226 (594)
Q Consensus 162 ---y~eAi~~~~~AL~l------dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~------a~~~l~~a~~~ 226 (594)
|++|+..+.+++.+ .+....+++.+|.+|...|++++|+.+|++++.+.+.... ++..++.+...
T Consensus 156 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 235 (338)
T 3ro2_A 156 RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 235 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 99999999999877 4566789999999999999999999999999998776544 67777777777
Q ss_pred hhhccCCC
Q 007653 227 LMKEDGHH 234 (594)
Q Consensus 227 l~~~~~a~ 234 (594)
.++...+.
T Consensus 236 ~g~~~~A~ 243 (338)
T 3ro2_A 236 LGEFETAS 243 (338)
T ss_dssp HTCHHHHH
T ss_pred cCCHHHHH
Confidence 76655443
No 167
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.51 E-value=6.3e-09 Score=103.04 Aligned_cols=125 Identities=15% Similarity=0.092 Sum_probs=105.5
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccc----cccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec--
Q 007653 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYS----EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK-- 158 (594)
Q Consensus 85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~----~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k-- 158 (594)
+..+...+...... ..+..+..+|..+.. .+++++|+.+|+++++..+.. +++++|.+|..
T Consensus 94 ~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----------a~~~lg~~~~~~~ 160 (273)
T 1ouv_A 94 TNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGD-----------GCTILGSLYDAGR 160 (273)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHH-----------HHHHHHHHHHcCC
Confidence 34455555544443 367889999999999 999999999999999976333 78999999998
Q ss_pred --cccchhhhhhcceeeeecccchHHHHHhccchhh----hhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007653 159 --TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (594)
Q Consensus 159 --lg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~----lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~ 226 (594)
.+++++|+..|++++++ .++.+++++|.+|.. .+++++|+.+|++++++.| ..++..++.+...
T Consensus 161 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 161 GTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYN 230 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHc
Confidence 99999999999999976 568999999999999 9999999999999999866 6778888888776
No 168
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.51 E-value=3.8e-09 Score=106.65 Aligned_cols=128 Identities=14% Similarity=0.036 Sum_probs=102.6
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee---cccc
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY---DAKN 179 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l---dP~~ 179 (594)
...+...|..+...|+|++|+.+|.+++.+.+..... .....+|.++|.+|..+|+|++|+..|.+++++ .|++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~ 191 (293)
T 2qfc_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN 191 (293)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT---THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc
Confidence 3556778888999999999999999999876554221 112448899999999999999999999999944 4442
Q ss_pred ----hHHHHHhccchhhhhhHHHHhhhcccccccCCCC------ChHHHHHhHHHHHhhhccCC
Q 007653 180 ----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEILMKEDGH 233 (594)
Q Consensus 180 ----~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~------~~a~~~l~~a~~~l~~~~~a 233 (594)
+.+++++|.+|..+|+|++|+.+|++++.+.++. ..++..++.+...+++.+.+
T Consensus 192 ~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 3799999999999999999999999999886431 45677888888888766544
No 169
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.51 E-value=1.6e-09 Score=107.74 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=109.0
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~ 178 (594)
....+..+..+|..++..|+|++|+.+|.+++++.+.... ......++.++|.+|...|+|++|+..+++++.+.+.
T Consensus 179 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 255 (338)
T 3ro2_A 179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 255 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 4445678999999999999999999999999998766432 1112347899999999999999999999999998877
Q ss_pred c------hHHHHHhccchhhhhhHHHHhhhcccccccCCCCC------hHHHHHhHHHHHhhhccCC
Q 007653 179 N------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG------TIADVLRDAKEILMKEDGH 233 (594)
Q Consensus 179 ~------~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~------~a~~~l~~a~~~l~~~~~a 233 (594)
. ..+++.+|.+|...|++++|+.+|++++.+.+... .++..++.+....++...+
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 256 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 6 88999999999999999999999999999876543 3666777777777665443
No 170
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.50 E-value=9.3e-09 Score=87.36 Aligned_cols=99 Identities=23% Similarity=0.286 Sum_probs=84.6
Q ss_pred HHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhh
Q 007653 87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166 (594)
Q Consensus 87 aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi 166 (594)
.+...+...+...+.....+..+|..++..|+|++|+..|.+++.+.|..+ .++++++.+|...+++++|+
T Consensus 27 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~la~~~~~~~~~~~A~ 97 (125)
T 1na0_A 27 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---------EAWYNLGNAYYKQGDYDEAI 97 (125)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH---------HHHHHHHHHHHHhcCHHHHH
Confidence 344444444444556677899999999999999999999999999988874 37899999999999999999
Q ss_pred hhcceeeeecccchHHHHHhccchhhhh
Q 007653 167 KVGSEVLAYDAKNVKALYRRGQAYKDIG 194 (594)
Q Consensus 167 ~~~~~AL~ldP~~~ka~~~rg~al~~lg 194 (594)
..|++++.++|++..+++.++.++...|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 98 EYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999999887654
No 171
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.49 E-value=6e-09 Score=89.75 Aligned_cols=99 Identities=10% Similarity=-0.031 Sum_probs=81.2
Q ss_pred HHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhh
Q 007653 89 RARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKV 168 (594)
Q Consensus 89 ~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~ 168 (594)
...+...+...++.+..+..+|..++..|+|++|+.+|.++++++|.+. .+|+++|.||..+|++++|+..
T Consensus 5 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~la~~~~~~g~~~~A~~~ 75 (115)
T 2kat_A 5 TERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS---------VAWKWLGKTLQGQGDRAGARQA 75 (115)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH---------HHHHHHHHHHHHcCCHHHHHHH
Confidence 3345555566777788999999999999999999999999999999884 3899999999999999999999
Q ss_pred cceeeeecccc--hHHHHHhccchhhhhhH
Q 007653 169 GSEVLAYDAKN--VKALYRRGQAYKDIGRL 196 (594)
Q Consensus 169 ~~~AL~ldP~~--~ka~~~rg~al~~lg~~ 196 (594)
|+++++++|.+ ..++..+...+..+++.
T Consensus 76 ~~~al~~~~~~~~~~~~~~l~~~l~~l~~~ 105 (115)
T 2kat_A 76 WESGLAAAQSRGDQQVVKELQVFLRRLARE 105 (115)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHhccc
Confidence 99999999864 44555555555555544
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.49 E-value=2.8e-09 Score=92.65 Aligned_cols=93 Identities=17% Similarity=0.103 Sum_probs=82.4
Q ss_pred ecccCceeeeccccchhhhhhcceeeeecccch---HHHHHhccchhhhhhHHHHhhhcccccccCCCC---ChHHHHHh
Q 007653 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV---KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD---GTIADVLR 221 (594)
Q Consensus 148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~---ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~---~~a~~~l~ 221 (594)
+++++|.+++..|+|++|+..|+++++.+|++. .+++.+|.+|...|+|++|+.+|++++.++|++ ..++..++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 578899999999999999999999999999998 899999999999999999999999999999999 77789999
Q ss_pred HHHHHhhhccCCCCCccch
Q 007653 222 DAKEILMKEDGHHGPRGLL 240 (594)
Q Consensus 222 ~a~~~l~~~~~a~~~~~~~ 240 (594)
.+...+++...+.......
T Consensus 84 ~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 9988887766544443333
No 173
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.48 E-value=1.3e-08 Score=94.23 Aligned_cols=107 Identities=12% Similarity=0.131 Sum_probs=93.6
Q ss_pred cccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc---cchhhhhhcceeeeec-c-cchHHHHHhcc
Q 007653 114 YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK---QYDECIKVGSEVLAYD-A-KNVKALYRRGQ 188 (594)
Q Consensus 114 ~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg---~y~eAi~~~~~AL~ld-P-~~~ka~~~rg~ 188 (594)
........+.+.|.+.+...+... .+.+++|.|+.+.+ +++++|..++.+++.+ | ++.+++|++|.
T Consensus 9 l~~~~l~~~~~~y~~e~~~~~~~~---------~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv 79 (152)
T 1pc2_A 9 VSVEDLLKFEKKFQSEKAAGSVSK---------STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 79 (152)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCH---------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCCCcH---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHH
Confidence 344556778888998888666553 37899999999988 8889999999999999 8 68999999999
Q ss_pred chhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 189 AYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 189 al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
+|+++|+|++|+++++++|+++|+|..+......+..++.+
T Consensus 80 ~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~k 120 (152)
T 1pc2_A 80 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 120 (152)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888754
No 174
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.48 E-value=1.1e-08 Score=86.09 Aligned_cols=97 Identities=8% Similarity=0.003 Sum_probs=83.6
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164 (594)
Q Consensus 85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e 164 (594)
+..+...+...+...+..+..+..+|..++..|+|++|+..|.+++++.|..+ .++.++|.+|..+|+|++
T Consensus 20 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~~a~~~~~~~~~~~ 90 (118)
T 1elw_A 20 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG---------KGYSRKAAALEFLNRFEE 90 (118)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH---------HHHHHHHHHHHHHhhHHH
Confidence 33444555555555666788999999999999999999999999999999874 388999999999999999
Q ss_pred hhhhcceeeeecccchHHHHHhccch
Q 007653 165 CIKVGSEVLAYDAKNVKALYRRGQAY 190 (594)
Q Consensus 165 Ai~~~~~AL~ldP~~~ka~~~rg~al 190 (594)
|+..+.++++++|++..+++.++.+.
T Consensus 91 A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 91 AKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999998887764
No 175
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.47 E-value=1.4e-08 Score=106.80 Aligned_cols=134 Identities=8% Similarity=-0.124 Sum_probs=122.5
Q ss_pred HHHHhhhhcccccchHHHHHHHhcccccccc-cchhHHHHHHHhhhccccccccccceeeeeecccCceeeecc-c-cch
Q 007653 87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEG-RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-K-QYD 163 (594)
Q Consensus 87 aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g-~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl-g-~y~ 163 (594)
.+...+...+..+++...++..++.++...+ ++++++..+.++|..+|.+. .+|+.|+.|+..+ + +++
T Consensus 72 ~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny---------~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 72 RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY---------QVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH---------HHHHHHHHHHHHHCCSCCH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH---------HHHHHHHHHHHHhcCCChH
Confidence 3556667777889999999999999998888 59999999999999999984 4899999999998 7 999
Q ss_pred hhhhhcceeeeecccchHHHHHhccchhhhhhHH--------HHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLE--------EAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 164 eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~--------eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
+++..|+++|+++|+|..+|+.|+.++..+++++ +++++++++++++|.|..++..++.+...++.
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999998 99999999999999999999999998777654
No 176
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.47 E-value=9.4e-09 Score=104.91 Aligned_cols=147 Identities=10% Similarity=0.049 Sum_probs=122.8
Q ss_pred hHHHHHHHHhhhhcccccchHHHHHHHh-------cccccccccchhHHHHHHHhhhccccccccccceeeeeeccc---
Q 007653 82 PEEIATMRARIDAQMNYEFNAAKMLKKQ-------GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLN--- 151 (594)
Q Consensus 82 ~~el~aa~~~~~a~~~~~~~~a~~l~~~-------Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N--- 151 (594)
+.+...+...+.+.....+..+.+|..+ +.++...+++.+++..|.+++.+.|..-. ++++
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~---------a~~~~~g 89 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLN---------ARIAIGG 89 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGC---------CEEECCT
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhh---------hhhccCC
Confidence 4455667777777888889999999999 89999999999999999999999998743 4455
Q ss_pred ------------------CceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCC-
Q 007653 152 ------------------SMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD- 212 (594)
Q Consensus 152 ------------------~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~- 212 (594)
++.+|...|+|++|++.|+.++..+|++. ++|.+|.++...++|++|+.+|++++...+.
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~ 168 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF 168 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc
Confidence 55778899999999999999999999999 9999999999999999999999988876322
Q ss_pred C-ChHHHHHhHHHHHhhhccCCCCCcc
Q 007653 213 D-GTIADVLRDAKEILMKEDGHHGPRG 238 (594)
Q Consensus 213 ~-~~a~~~l~~a~~~l~~~~~a~~~~~ 238 (594)
+ ..++..++.+...+++..++...+.
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~ 195 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLT 195 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 1 3488899999888887665544433
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.47 E-value=3.3e-09 Score=94.03 Aligned_cols=107 Identities=19% Similarity=0.224 Sum_probs=90.8
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecc----
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA---- 177 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP---- 177 (594)
.+..+..+|..++..|+|++|+.+|.+++.+.+.... ......++.++|.+|...|+|++|+..+.+++.+.+
T Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 124 (164)
T 3ro3_A 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 124 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc
Confidence 3568999999999999999999999999998765422 112245789999999999999999999999998743
Q ss_pred --cchHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007653 178 --KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 211 (594)
Q Consensus 178 --~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P 211 (594)
....+++.+|.+|..+|++++|+.+|++++++..
T Consensus 125 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 125 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 3477899999999999999999999999987643
No 178
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.46 E-value=2.1e-08 Score=104.73 Aligned_cols=132 Identities=7% Similarity=-0.101 Sum_probs=117.7
Q ss_pred HHHhhhhcccccchHHHHHHHhccccccccc----------chhHHHHHHHhhhccccccccccceeeeeecccCceeee
Q 007653 88 MRARIDAQMNYEFNAAKMLKKQGNELYSEGR----------FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL 157 (594)
Q Consensus 88 a~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~----------y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~ 157 (594)
+...+...+..+++...++..++.++...++ +.+++.++.++|..+|.+. .+|++|+.++.
T Consensus 49 aL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny---------~aW~hR~wlL~ 119 (331)
T 3dss_A 49 VLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY---------GTWHHRCWLLS 119 (331)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHh
Confidence 4455566667788888888888888877665 7899999999999999985 48999999999
Q ss_pred cccc--chhhhhhcceeeeecccchHHHHHhccchhhhhh-HHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653 158 KTKQ--YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR-LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (594)
Q Consensus 158 klg~--y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~-~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~ 228 (594)
.+++ |++++.+|+++|++||.|..+|+.|+.++..+|. ++++++++++++.++|.|..+|..+..+...+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 193 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHS
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhh
Confidence 9994 8999999999999999999999999999999999 699999999999999999999999999888774
No 179
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=1.7e-08 Score=89.06 Aligned_cols=99 Identities=9% Similarity=-0.015 Sum_probs=85.4
Q ss_pred HHHHHHHhhhhcccccchH---HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc
Q 007653 84 EIATMRARIDAQMNYEFNA---AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~~~---a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg 160 (594)
++..+...+...+...++. ...+..+|..++..|+|++|+.+|.+++++.|.++ .+|+++|.||..++
T Consensus 43 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~~a~~~~~~~ 113 (148)
T 2dba_A 43 DYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV---------KALYRRSQALEKLG 113 (148)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCH---------HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCH---------HHHHHHHHHHHHcC
Confidence 4455666666666666665 88999999999999999999999999999998874 48899999999999
Q ss_pred cchhhhhhcceeeeecccchHHHHHhccchh
Q 007653 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYK 191 (594)
Q Consensus 161 ~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~ 191 (594)
+|++|+..|.++++++|++..++..++.+..
T Consensus 114 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 114 RLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 9999999999999999999998887776654
No 180
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.43 E-value=2.3e-08 Score=96.49 Aligned_cols=112 Identities=10% Similarity=-0.013 Sum_probs=99.0
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc----cchhhhhhcceeeeec
Q 007653 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK----QYDECIKVGSEVLAYD 176 (594)
Q Consensus 101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg----~y~eAi~~~~~AL~ld 176 (594)
..+.++..+|..++..+++++|+.+|+++++.. + ..+++++|.+|.. + ++++|+.+|++++ +
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~---------~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~--~ 81 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--D---------GDALALLAQLKIR-NPQQADYPQARQLAEKAV--E 81 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--C---------HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH--H
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--C---------HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH--H
Confidence 457789999999999999999999999998853 3 2378999999998 7 9999999999995 6
Q ss_pred ccchHHHHHhccchhh----hhhHHHHhhhcccccccCCC--CChHHHHHhHHHHH
Q 007653 177 AKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPD--DGTIADVLRDAKEI 226 (594)
Q Consensus 177 P~~~ka~~~rg~al~~----lg~~~eAi~~lekAl~l~P~--~~~a~~~l~~a~~~ 226 (594)
+.++.+++++|.+|.. .+++++|+.+|+++++..|. ++.++..|+.+...
T Consensus 82 ~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~ 137 (212)
T 3rjv_A 82 AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS 137 (212)
T ss_dssp TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence 7899999999999998 88999999999999999883 57888888888665
No 181
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.43 E-value=7e-09 Score=96.97 Aligned_cols=113 Identities=14% Similarity=0.097 Sum_probs=92.2
Q ss_pred ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecc
Q 007653 98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA 177 (594)
Q Consensus 98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP 177 (594)
..+..+..+..+|..+...|+|++|+.+|.+++.+....+.. ......++.++|.+|..+|+|++|+..+++++.+.+
T Consensus 61 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 138 (203)
T 3gw4_A 61 DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED--PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ 138 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 455667889999999999999999999999999984432210 001245789999999999999999999999997643
Q ss_pred c------chHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007653 178 K------NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212 (594)
Q Consensus 178 ~------~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~ 212 (594)
. ...+++++|.+|..+|++++|+.+|++++.+...
T Consensus 139 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 139 QADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 2 2446789999999999999999999999987544
No 182
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.39 E-value=1.9e-08 Score=85.23 Aligned_cols=73 Identities=10% Similarity=-0.018 Sum_probs=65.9
Q ss_pred cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653 99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178 (594)
Q Consensus 99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~ 178 (594)
.++.+..+..+|.+++..|+|++|+.+|+++++++|.++. +|+++|.||..+|+|++|+..|++++++.|.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG---------TYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 4566789999999999999999999999999999999854 8999999999999999999999999999876
Q ss_pred ch
Q 007653 179 NV 180 (594)
Q Consensus 179 ~~ 180 (594)
+.
T Consensus 74 ~~ 75 (100)
T 3ma5_A 74 EG 75 (100)
T ss_dssp HS
T ss_pred CC
Confidence 53
No 183
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.35 E-value=7.4e-08 Score=105.51 Aligned_cols=136 Identities=6% Similarity=-0.081 Sum_probs=98.8
Q ss_pred HHHHHHHhhhhcccccchH-HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCcee-eecccc
Q 007653 84 EIATMRARIDAQMNYEFNA-AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSC-YLKTKQ 161 (594)
Q Consensus 84 el~aa~~~~~a~~~~~~~~-a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~-~~klg~ 161 (594)
+++.+...+.+.+...+.. ...|...|..+.+.|++++|+..|.++++..|.... +|...+.+ |...|+
T Consensus 336 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~---------~~~~~a~~~~~~~~~ 406 (530)
T 2ooe_A 336 KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH---------VYVTAALMEYYCSKD 406 (530)
T ss_dssp CHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH---------HHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchH---------HHHHHHHHHHHHcCC
Confidence 3445666666666666554 357888888888888888888888888887665421 33333322 346888
Q ss_pred chhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh----HHHHHhHHHHHhh
Q 007653 162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT----IADVLRDAKEILM 228 (594)
Q Consensus 162 y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~----a~~~l~~a~~~l~ 228 (594)
+++|+..|+++|+++|+++.+|..++..+..+|++++|...|++++...|.++. ++..+...+...+
T Consensus 407 ~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 407 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 899999999999999999999999999888899999999999999888776654 5555444444443
No 184
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.34 E-value=1.7e-08 Score=110.61 Aligned_cols=136 Identities=6% Similarity=-0.143 Sum_probs=115.9
Q ss_pred HHHHhhhhccc-ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhh
Q 007653 87 TMRARIDAQMN-YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 165 (594)
Q Consensus 87 aa~~~~~a~~~-~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eA 165 (594)
.+...+...+. ..++....+...+..+.+.|++++|+..|++++++.|.++ ..+|++++.++.+.|++++|
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~--------~~~~~~~~~~~~~~~~~~~A 375 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP--------TLVYIQYMKFARRAEGIKSG 375 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc--------hHHHHHHHHHHHHhcCHHHH
Confidence 45566666665 5788899999999999999999999999999999988763 13789999999999999999
Q ss_pred hhhcceeeeecccchHHHHHhccc-hhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007653 166 IKVGSEVLAYDAKNVKALYRRGQA-YKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 230 (594)
Q Consensus 166 i~~~~~AL~ldP~~~ka~~~rg~a-l~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~ 230 (594)
+..|.+|++..|.+...++..+.. +...|++++|+..|+++++++|+++.++..+..+...+++.
T Consensus 376 ~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~ 441 (530)
T 2ooe_A 376 RMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED 441 (530)
T ss_dssp HHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCH
T ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCH
Confidence 999999999999888888776655 34689999999999999999999999998888876655443
No 185
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.31 E-value=2.4e-08 Score=109.70 Aligned_cols=128 Identities=13% Similarity=0.095 Sum_probs=99.6
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee-------
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY------- 175 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l------- 175 (594)
+..+.+.+..+..+|+|++|+..|+++|++....-. ..+...+..+.|+|.+|..+|+|++|+..|.++|++
T Consensus 309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg-~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~ 387 (490)
T 3n71_A 309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFA-DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH 387 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBC-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC
Confidence 334455566677899999999999999987544321 122334668899999999999999999999999976
Q ss_pred -cccchHHHHHhccchhhhhhHHHHhhhccccccc-----CCCCChHH---HHHhHHHHHhhhcc
Q 007653 176 -DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV-----SPDDGTIA---DVLRDAKEILMKED 231 (594)
Q Consensus 176 -dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l-----~P~~~~a~---~~l~~a~~~l~~~~ 231 (594)
+|+-+..++++|.+|..+|+|++|+..|++|+++ -|+++.+. ..+..++..++.++
T Consensus 388 ~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~ 452 (490)
T 3n71_A 388 NNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFR 452 (490)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 4667889999999999999999999999999985 46665544 45666665555544
No 186
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.28 E-value=4.1e-08 Score=84.18 Aligned_cols=109 Identities=14% Similarity=0.120 Sum_probs=86.2
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164 (594)
Q Consensus 85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e 164 (594)
+..+...+...+...+..+..+..+|..++..|+|++|+.+|.+++.+.|..+. .......+|+++|.+|...|+|++
T Consensus 20 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~ 97 (131)
T 1elr_A 20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE--DYRQIAKAYARIGNSYFKEEKYKD 97 (131)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccch--hHHHHHHHHHHHHHHHHHhccHHH
Confidence 344555555555556667889999999999999999999999999999886521 000113378999999999999999
Q ss_pred hhhhcceeeeecccchHHHHHhccchhhhhhH
Q 007653 165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRL 196 (594)
Q Consensus 165 Ai~~~~~AL~ldP~~~ka~~~rg~al~~lg~~ 196 (594)
|+..|.++++++| +...+..++.++..+++.
T Consensus 98 A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 98 AIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 9999999999998 688888888887776654
No 187
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.16 E-value=1.4e-07 Score=102.13 Aligned_cols=112 Identities=13% Similarity=0.213 Sum_probs=88.7
Q ss_pred hcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee--------cccch
Q 007653 109 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--------DAKNV 180 (594)
Q Consensus 109 ~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l--------dP~~~ 180 (594)
.+......|+|++|+..|+++|++....-. ..+...+..+.|+|.+|..+|+|++|+..|+++|++ +|+-+
T Consensus 304 ~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg-~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 382 (433)
T 3qww_A 304 EFRRAKHYKSPSELLEICELSQEKMSSVFE-DSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVA 382 (433)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHHTTTBC-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHhhhccCHHHHHHHHHHHHHHhhCccC-hhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 333445678999999999999986543211 122334568899999999999999999999999976 57778
Q ss_pred HHHHHhccchhhhhhHHHHhhhccccccc-----CCCCChHHHHHh
Q 007653 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEV-----SPDDGTIADVLR 221 (594)
Q Consensus 181 ka~~~rg~al~~lg~~~eAi~~lekAl~l-----~P~~~~a~~~l~ 221 (594)
..|+++|.+|..+|+|++|+..|++|+++ -|+++.+.....
T Consensus 383 ~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~ 428 (433)
T 3qww_A 383 SMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQ 428 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 89999999999999999999999999886 467766555443
No 188
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.13 E-value=2.9e-07 Score=83.13 Aligned_cols=98 Identities=11% Similarity=-0.038 Sum_probs=83.8
Q ss_pred hcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec----cccchhhhhhcceeeeecccchHHHH
Q 007653 109 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----TKQYDECIKVGSEVLAYDAKNVKALY 184 (594)
Q Consensus 109 ~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k----lg~y~eAi~~~~~AL~ldP~~~ka~~ 184 (594)
+|..+...+.+++|+.+|+++.+.. + ..+++++|.+|.. .+++++|+.+|+++.+. .++.+++
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g--~---------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~ 97 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN--S---------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCL 97 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT--C---------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC--C---------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHH
Confidence 8989998889999999999999863 3 2378999999998 89999999999999865 7899999
Q ss_pred Hhccchhh----hhhHHHHhhhcccccccCCCCChHHHHHh
Q 007653 185 RRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLR 221 (594)
Q Consensus 185 ~rg~al~~----lg~~~eAi~~lekAl~l~P~~~~a~~~l~ 221 (594)
++|.+|.. .+++++|+.+|++|.+. .++.+...|+
T Consensus 98 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 98 ILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred HHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 99999999 89999999999999887 3445544443
No 189
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.13 E-value=1.2e-07 Score=98.06 Aligned_cols=126 Identities=12% Similarity=0.018 Sum_probs=97.6
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeec------
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD------ 176 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ld------ 176 (594)
+..+..+|..++..|+|++|+.+|.+++.+.+..... .....++.++|.+|...|+|++|+..|++++++.
T Consensus 53 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 129 (373)
T 1hz4_A 53 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW---HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE 129 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc
Confidence 4567888999999999999999999999987765320 0113356889999999999999999999999876
Q ss_pred --ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC-----hHHHHHhHHHHHhhhcc
Q 007653 177 --AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG-----TIADVLRDAKEILMKED 231 (594)
Q Consensus 177 --P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~-----~a~~~l~~a~~~l~~~~ 231 (594)
|....+++++|.+|...|++++|+.+|++++.+.+... .++..++.+....++..
T Consensus 130 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 191 (373)
T 1hz4_A 130 QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLD 191 (373)
T ss_dssp TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHH
Confidence 44567888899999999999999999999998887632 24455555555554443
No 190
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.10 E-value=1.6e-07 Score=101.47 Aligned_cols=115 Identities=13% Similarity=0.124 Sum_probs=90.8
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee--------c
Q 007653 105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--------D 176 (594)
Q Consensus 105 ~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l--------d 176 (594)
.+...-..+..+|+|++|+..|+++|++....- ...+...+..+.|++.+|..+|+|++|+..|.++|.+ +
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~l-g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H 367 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERL-PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH 367 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCC-CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcC-CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence 334444456778999999999999998654321 1123334668899999999999999999999999966 4
Q ss_pred ccchHHHHHhccchhhhhhHHHHhhhccccccc-----CCCCChHHHHH
Q 007653 177 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV-----SPDDGTIADVL 220 (594)
Q Consensus 177 P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l-----~P~~~~a~~~l 220 (594)
|.-+..++++|.+|..+|+|++|+..|++|+++ -|+++.+...+
T Consensus 368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 667889999999999999999999999999885 46776555443
No 191
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.08 E-value=4.3e-07 Score=76.98 Aligned_cols=68 Identities=13% Similarity=-0.022 Sum_probs=60.7
Q ss_pred ecccCceeeecccc---chhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653 148 CSLNSMSCYLKTKQ---YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215 (594)
Q Consensus 148 ~~~N~a~~~~klg~---y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~ 215 (594)
++..+|.+++..++ ..+|...++++|++||+++.+++.+|.+++..|+|++|+.+|+++++.+|.++.
T Consensus 8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 56667777765544 799999999999999999999999999999999999999999999999999544
No 192
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.03 E-value=1.5e-06 Score=93.77 Aligned_cols=126 Identities=13% Similarity=0.049 Sum_probs=105.4
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHhccccccc----ccchhHHHHHHHhhhccccccccccceeeeeecccCcee-e-
Q 007653 83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE----GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSC-Y- 156 (594)
Q Consensus 83 ~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~----g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~-~- 156 (594)
.+...+...+.+........+..+.++|..|... +++++|+.+|++++ |.++. +++++|.+ |
T Consensus 193 ~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~---------a~~~Lg~~~~~ 260 (452)
T 3e4b_A 193 EQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPA---------SWVSLAQLLYD 260 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTH---------HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHH---------HHHHHHHHHHh
Confidence 3566677777777777777777778899888665 79999999999998 66643 78999998 4
Q ss_pred -eccccchhhhhhcceeeeecccchHHHHHhccchhhhh-----hHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007653 157 -LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-----RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (594)
Q Consensus 157 -~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg-----~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~ 226 (594)
...+++++|+.+|++++ ++.++.+++++|.+|. .| ++++|+.+|++|+ |.++.+...|+.+...
T Consensus 261 ~~~~~d~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 261 FPELGDVEQMMKYLDNGR--AADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRR 330 (452)
T ss_dssp SGGGCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence 57899999999999998 4569999999999998 66 9999999999999 8899999999987654
No 193
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.01 E-value=4.9e-07 Score=77.61 Aligned_cols=82 Identities=16% Similarity=0.063 Sum_probs=72.5
Q ss_pred ecccCceeeeccccchhhhhhcceeeeec-------ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHH
Q 007653 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYD-------AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL 220 (594)
Q Consensus 148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ld-------P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l 220 (594)
.++.+|..++..++|..|+..|++|+++. +..+..++.+|.||..+|++++|+..++++++++|++..+..++
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 35788999999999999999999999864 35688999999999999999999999999999999999998888
Q ss_pred hHHHHHhhh
Q 007653 221 RDAKEILMK 229 (594)
Q Consensus 221 ~~a~~~l~~ 229 (594)
...+..+..
T Consensus 87 ~~~~~~~~~ 95 (104)
T 2v5f_A 87 KYFEYIMAK 95 (104)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 876665543
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.99 E-value=4.8e-07 Score=99.42 Aligned_cols=110 Identities=7% Similarity=-0.055 Sum_probs=92.0
Q ss_pred ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee--
Q 007653 98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-- 175 (594)
Q Consensus 98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l-- 175 (594)
.++..+..+.++|..|..+|+|++|+.+|+++|++....-. +.+...+..++|+|.+|..+|+|++|+..|.+|+++
T Consensus 346 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG-~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~ 424 (490)
T 3n71_A 346 TNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH-HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL 424 (490)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 57788999999999999999999999999999986532211 122334668999999999999999999999999976
Q ss_pred ------cccchHHHHHhccchhhhhhHHHHhhhcccccc
Q 007653 176 ------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE 208 (594)
Q Consensus 176 ------dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~ 208 (594)
+|.-.+.+-.++.++..++.|.+|...|.++.+
T Consensus 425 ~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 425 VTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788999999999999999999987643
No 195
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.99 E-value=4.3e-07 Score=77.99 Aligned_cols=83 Identities=12% Similarity=0.032 Sum_probs=70.0
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 182 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka 182 (594)
+..++.+|..++..++|..|+..|++|++..+.... .......++.++|.||+++|++++|+..+.++++++|++..+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~--~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI--STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC--CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC--CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 456889999999999999999999999987643311 011224578999999999999999999999999999999999
Q ss_pred HHHhc
Q 007653 183 LYRRG 187 (594)
Q Consensus 183 ~~~rg 187 (594)
+.+++
T Consensus 83 ~~n~~ 87 (104)
T 2v5f_A 83 NGNLK 87 (104)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 88887
No 196
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.97 E-value=7.4e-07 Score=82.45 Aligned_cols=101 Identities=9% Similarity=-0.006 Sum_probs=83.2
Q ss_pred ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc---cchhHHHHHHHhhhcc-ccccccccceeeeeecccCceee
Q 007653 81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG---RFSNALQKYLLAKKNL-QGIHSSEGRTLLLACSLNSMSCY 156 (594)
Q Consensus 81 ~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g---~y~eAi~~Y~kAL~l~-p~~~~~e~~~l~~~~~~N~a~~~ 156 (594)
.++++..+..+|...+.......+..++.|..+.+.+ ++.++|..+++.++.+ |... ..|++++|..|
T Consensus 10 ~~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~--------rd~lY~LAv~~ 81 (152)
T 1pc2_A 10 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQ--------RDYVFYLAVGN 81 (152)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHH--------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccch--------HHHHHHHHHHH
Confidence 4555666777777776666677899999999999988 7889999999999987 5221 23899999999
Q ss_pred eccccchhhhhhcceeeeecccchHHHHHhccc
Q 007653 157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA 189 (594)
Q Consensus 157 ~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~a 189 (594)
+++++|.+|+++|+++|+++|+|..+..-+-.+
T Consensus 82 ~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 82 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 999999999999999999999998876655443
No 197
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.84 E-value=5.2e-06 Score=89.61 Aligned_cols=111 Identities=16% Similarity=0.061 Sum_probs=69.2
Q ss_pred HHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccc---hhhhhhcceeeeecccchHHH
Q 007653 107 KKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY---DECIKVGSEVLAYDAKNVKAL 183 (594)
Q Consensus 107 ~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y---~eAi~~~~~AL~ldP~~~ka~ 183 (594)
..+|..+++.|+|++|+..|+++++. .++ .+++++|.+|+..|++ ++|+..|+++++. ++.++
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~---------~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~ 72 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYS---------EAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQ 72 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCC---------TGGGTCC-------------------------------CH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCH---------HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHH
Confidence 34678889999999999999999875 332 3789999999999999 9999999999976 88999
Q ss_pred HHhccchhhhh-----hHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653 184 YRRGQAYKDIG-----RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 233 (594)
Q Consensus 184 ~~rg~al~~lg-----~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a 233 (594)
+++|.++...+ ++++|+.+|++++. +.++.++..|+.+..........
T Consensus 73 ~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~~~~~~~~ 125 (452)
T 3e4b_A 73 ARLGRLLAAKPGATEAEHHEAESLLKKAFA--NGEGNTLIPLAMLYLQYPHSFPN 125 (452)
T ss_dssp HHHHHHHHTC--CCHHHHHHHHHHHHHHHH--TTCSSCHHHHHHHHHHCGGGCTT
T ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhCCCCCCC
Confidence 99999776655 89999999999987 55667888999888776654443
No 198
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.76 E-value=5.4e-07 Score=93.11 Aligned_cols=126 Identities=10% Similarity=-0.014 Sum_probs=99.1
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc---
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN--- 179 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~--- 179 (594)
.+.+...|..++..|++++|+.+|.+++...|.... .....++.+++.+|...|+|++|+..+.+++.+.|..
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF----YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 89 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCch----hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence 456778888999999999999999999998765421 1123367899999999999999999999999987654
Q ss_pred ---hHHHHHhccchhhhhhHHHHhhhcccccccCC--------CCChHHHHHhHHHHHhhhccC
Q 007653 180 ---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP--------DDGTIADVLRDAKEILMKEDG 232 (594)
Q Consensus 180 ---~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P--------~~~~a~~~l~~a~~~l~~~~~ 232 (594)
..+++++|.+|...|+|++|+.+|++++.+.+ ....++..++.+....++...
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 153 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 153 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHH
Confidence 34578999999999999999999999998763 223455566776666655443
No 199
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.74 E-value=4e-06 Score=90.72 Aligned_cols=73 Identities=14% Similarity=0.051 Sum_probs=34.4
Q ss_pred ecccCceeeeccc---cchhhhhhcceeeeecccchHHHHHhccchhh----hhhHHHHhhhcccccccCCCCChHHHHH
Q 007653 148 CSLNSMSCYLKTK---QYDECIKVGSEVLAYDAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVL 220 (594)
Q Consensus 148 ~~~N~a~~~~klg---~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~----lg~~~eAi~~lekAl~l~P~~~~a~~~l 220 (594)
+++++|.+|...+ ++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++++. .++.++..+
T Consensus 330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L 405 (490)
T 2xm6_A 330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQL 405 (490)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHH
Confidence 3444555444433 445555555555433 344555555555544 44555555555555443 234444444
Q ss_pred hHHH
Q 007653 221 RDAK 224 (594)
Q Consensus 221 ~~a~ 224 (594)
+.+.
T Consensus 406 g~~y 409 (490)
T 2xm6_A 406 GEIY 409 (490)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 200
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.73 E-value=4.6e-06 Score=74.58 Aligned_cols=101 Identities=13% Similarity=0.142 Sum_probs=82.5
Q ss_pred hhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh---hhhhcceeeeec-c-cchHHHHHhccchhhhh
Q 007653 120 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE---CIKVGSEVLAYD-A-KNVKALYRRGQAYKDIG 194 (594)
Q Consensus 120 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e---Ai~~~~~AL~ld-P-~~~ka~~~rg~al~~lg 194 (594)
..+...|.+.+...+.. ..+.+++|.|+.+...... +|..++..++.+ | ..-+++|.+|.+++++|
T Consensus 18 ~~~~~~y~~e~~~~~~s---------~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVS---------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHSCCC---------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCCCc---------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh
Confidence 44556676666544433 2366788888888776665 999999988887 6 68899999999999999
Q ss_pred hHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653 195 RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229 (594)
Q Consensus 195 ~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~ 229 (594)
+|++|+.+++..|+++|+|..+......++.++.+
T Consensus 89 ~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k 123 (126)
T 1nzn_A 89 EYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 123 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988887754
No 201
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.70 E-value=6.1e-06 Score=89.24 Aligned_cols=107 Identities=13% Similarity=0.005 Sum_probs=52.5
Q ss_pred HHHHHHhcccccc----cccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec----cccchhhhhhcceeee
Q 007653 103 AKMLKKQGNELYS----EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----TKQYDECIKVGSEVLA 174 (594)
Q Consensus 103 a~~l~~~Gn~~~~----~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k----lg~y~eAi~~~~~AL~ 174 (594)
+.++..+|..+.. .+++++|+.+|+++++.. + ..+++++|.+|.. .+++++|+..|+++++
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~---------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--R---------DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--C---------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 3444555555544 455555555555554432 1 1144555555554 4455555555555543
Q ss_pred ecccchHHHHHhccchhh----hhhHHHHhhhcccccccCCCCChHHHHHhHHH
Q 007653 175 YDAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK 224 (594)
Q Consensus 175 ldP~~~ka~~~rg~al~~----lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~ 224 (594)
. .++.+++++|.+|.. .+++++|+.+|+++++. .++.++..++.+.
T Consensus 180 ~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y 229 (490)
T 2xm6_A 180 Q--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMY 229 (490)
T ss_dssp T--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred C--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence 3 345555555555554 55555555555555443 2344444444443
No 202
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.70 E-value=1.9e-05 Score=94.82 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=91.2
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecc------
Q 007653 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA------ 177 (594)
Q Consensus 104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP------ 177 (594)
..+...|..++..|+|++|+.+|.++- .|..++.||.++|+|++|++.+.+|...++
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA~-----------------ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~ 1258 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNVS-----------------NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCF 1258 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhh-----------------HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHH
Confidence 456689999999999999999999972 478999999999999999999999965544
Q ss_pred -------------------cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653 178 -------------------KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (594)
Q Consensus 178 -------------------~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l 227 (594)
.+++.+..++..|...|+|++|+..|++++.++|.+...+..++.+..+.
T Consensus 1259 acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 24556667788889999999999999999999999998888888775543
No 203
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=6.7e-06 Score=86.23 Aligned_cols=125 Identities=9% Similarity=0.021 Sum_probs=96.1
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee------cc
Q 007653 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY------DA 177 (594)
Q Consensus 104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l------dP 177 (594)
..+..+|.++...|++++|+.+|.+++.+.+.... ..+...++.++|.+|...|+|.+|+..+.+++.. .+
T Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR---VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC---CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc---cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 44566788888999999999999999887655422 2233557889999999999999999999988765 45
Q ss_pred cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653 178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 231 (594)
Q Consensus 178 ~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~ 231 (594)
..+.++...|.+|..+|+|++|...|++++.+.+.........+.+...++...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~ 226 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILH 226 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Confidence 668899999999999999999999999999886654433334444444444433
No 204
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.68 E-value=4.3e-05 Score=91.87 Aligned_cols=60 Identities=20% Similarity=0.093 Sum_probs=47.8
Q ss_pred eecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007653 147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 211 (594)
Q Consensus 147 ~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P 211 (594)
.+|+++|.++...|+|++|+..|.++ +++.+|++.+.++.++|+|++|+++|..|.+..+
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~ 1165 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR 1165 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Confidence 47788888888888888888888665 7778888888888888888888888888777763
No 205
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.65 E-value=7.3e-06 Score=84.61 Aligned_cols=124 Identities=10% Similarity=-0.018 Sum_probs=94.1
Q ss_pred HHHHHhhhhcccccc------hHHHHHHHhcccccccc--cchhHHHHHHHhhhccccccccccceeeeeecccCceeee
Q 007653 86 ATMRARIDAQMNYEF------NAAKMLKKQGNELYSEG--RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL 157 (594)
Q Consensus 86 ~aa~~~~~a~~~~~~------~~a~~l~~~Gn~~~~~g--~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~ 157 (594)
+.|.+.+.+-.+..+ +........+.+.+..| +|.+|...|++..+..|.... ...++| |+.
T Consensus 153 d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~-------~~lLln---~~~ 222 (310)
T 3mv2_B 153 STASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKT-------QLGLLN---LHL 222 (310)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHH-------HHHHHH---HHH
T ss_pred HHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCccc-------HHHHHH---HHH
Confidence 345555554444444 44455555565555555 999999999999888775211 124455 899
Q ss_pred ccccchhhhhhcceeeee----------cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHh
Q 007653 158 KTKQYDECIKVGSEVLAY----------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 221 (594)
Q Consensus 158 klg~y~eAi~~~~~AL~l----------dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~ 221 (594)
++|+|++|..+++.++++ +|+++.++.++..+...+|+ +|.++++++..++|+++-+.....
T Consensus 223 ~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~ 294 (310)
T 3mv2_B 223 QQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQE 294 (310)
T ss_dssp HHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHH
Confidence 999999999999988887 58899999999999999997 899999999999999987765443
No 206
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.62 E-value=1.1e-05 Score=87.03 Aligned_cols=105 Identities=15% Similarity=0.113 Sum_probs=73.6
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch---
Q 007653 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV--- 180 (594)
Q Consensus 104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~--- 180 (594)
..+...|+.++..|+|++|+.+|.++ ..|.+++.|+.++|+|++|++.|.++. +|.-.
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a-----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v 183 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV-----------------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEV 183 (449)
T ss_dssp --------------CTTTHHHHHHHT-----------------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-----------------hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHH
Confidence 48999999999999999999999987 147899999999999999999999994 34211
Q ss_pred -HHHHH-----------------------hccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653 181 -KALYR-----------------------RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (594)
Q Consensus 181 -ka~~~-----------------------rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l 227 (594)
.++.. +...|...|++++|+..|++++.+++.+..++..++.+..+.
T Consensus 184 ~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 184 CFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence 22222 336788999999999999999999999998888888775544
No 207
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.58 E-value=1.6e-05 Score=80.94 Aligned_cols=90 Identities=10% Similarity=-0.040 Sum_probs=80.4
Q ss_pred ccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecc-----ccchhhhhhcceeeeecccc-hHHHHHhccch
Q 007653 117 GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-----KQYDECIKVGSEVLAYDAKN-VKALYRRGQAY 190 (594)
Q Consensus 117 g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl-----g~y~eAi~~~~~AL~ldP~~-~ka~~~rg~al 190 (594)
+....|...++++|+++|.... ..+|..+|..|.+. |+.++|.++|++||+++|+. +..++..|..|
T Consensus 177 ~~l~~A~a~lerAleLDP~~~~-------GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l 249 (301)
T 3u64_A 177 DTVHAAVMMLERACDLWPSYQE-------GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADAL 249 (301)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHH-------HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHhCCCccc-------CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 3457899999999999999533 45899999999995 99999999999999999975 99999999999
Q ss_pred hhh-hhHHHHhhhcccccccCCCC
Q 007653 191 KDI-GRLEEAVSDLSNAHEVSPDD 213 (594)
Q Consensus 191 ~~l-g~~~eAi~~lekAl~l~P~~ 213 (594)
+.. |++++|..++++|+.++|..
T Consensus 250 ~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 250 CIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp TTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCC
Confidence 885 99999999999999998874
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.57 E-value=1.4e-05 Score=71.86 Aligned_cols=94 Identities=14% Similarity=0.028 Sum_probs=82.2
Q ss_pred cccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhh---
Q 007653 116 EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD--- 192 (594)
Q Consensus 116 ~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~--- 192 (594)
.+++++|+.+|+++.+..... ++ +|.+|...+.+++|+.+|+++++. .++.+++++|.+|..
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~-----------a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 72 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMF-----------GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKY 72 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTT-----------HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSS
T ss_pred ccCHHHHHHHHHHHHcCCCHh-----------hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCC
Confidence 468999999999999875333 33 999999999999999999999865 789999999999998
Q ss_pred -hhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007653 193 -IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (594)
Q Consensus 193 -lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~ 226 (594)
.+++++|+.+|++|.+. .++.+...|+.+...
T Consensus 73 ~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 73 VKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA 105 (138)
T ss_dssp SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence 89999999999999886 678888888887654
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.54 E-value=3e-05 Score=81.72 Aligned_cols=126 Identities=10% Similarity=0.027 Sum_probs=91.5
Q ss_pred cCChHHHHHHHHhhhhcccccchHHHHHHHhccccccccc-------chhHHH-HHH--Hhhhccccccccccceeeeee
Q 007653 79 NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR-------FSNALQ-KYL--LAKKNLQGIHSSEGRTLLLAC 148 (594)
Q Consensus 79 ~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~-------y~eAi~-~Y~--kAL~l~p~~~~~e~~~l~~~~ 148 (594)
...++.+..+...+.+.++..|+.+.++-.++.+++.... ...++. .+. .++..+|..+ .+
T Consensus 209 ~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a---------~~ 279 (372)
T 3ly7_A 209 HGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLS---------II 279 (372)
T ss_dssp HCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCH---------HH
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCH---------HH
Confidence 3456677777777888888777777666666655532111 111111 122 2234445553 36
Q ss_pred cccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007653 149 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214 (594)
Q Consensus 149 ~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~ 214 (594)
|.-++.++...|++++|+..+++||.++|+ +.+|..+|.++...|++++|++.|++|+.++|..+
T Consensus 280 ~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 280 YQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 666777777789999999999999999975 67889999999999999999999999999999875
No 210
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.37 E-value=5.9e-06 Score=86.63 Aligned_cols=128 Identities=5% Similarity=-0.067 Sum_probs=99.5
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecc-----
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA----- 177 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP----- 177 (594)
..++.++|..|+..|+|++|+.+|.+++.+.+..... .....++.+++.++...+++++|+..|.+++.+.+
T Consensus 55 ~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 131 (434)
T 4b4t_Q 55 ETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS---KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV 131 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH---HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch---HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence 4578999999999999999999999999987765321 01123566788999999999999999999987643
Q ss_pred -cchHHHHHhccchhhhhhHHHHhhhcccccccCCC------CChHHHHHhHHHHHhhhccCC
Q 007653 178 -KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD------DGTIADVLRDAKEILMKEDGH 233 (594)
Q Consensus 178 -~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~------~~~a~~~l~~a~~~l~~~~~a 233 (594)
..+..+.++|.+|...|+|++|+..+++++..... ..+++..++.+...++++..+
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 194 (434)
T 4b4t_Q 132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKS 194 (434)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHH
Confidence 45789999999999999999999999988765322 234666666666666655443
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.27 E-value=1.8e-05 Score=66.81 Aligned_cols=71 Identities=13% Similarity=-0.032 Sum_probs=61.7
Q ss_pred chHHHHHHHhccccccccc---chhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeec
Q 007653 100 FNAAKMLKKQGNELYSEGR---FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD 176 (594)
Q Consensus 100 ~~~a~~l~~~Gn~~~~~g~---y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ld 176 (594)
++.++.+..+|..++..++ ..+|..+|.++|.++|.++. +++.+|..+++.|+|++|+..++++++.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~r---------A~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEA---------ALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4557788888888865554 79999999999999999954 88899999999999999999999999999
Q ss_pred ccc
Q 007653 177 AKN 179 (594)
Q Consensus 177 P~~ 179 (594)
|..
T Consensus 74 p~~ 76 (93)
T 3bee_A 74 DPN 76 (93)
T ss_dssp CTT
T ss_pred CCC
Confidence 874
No 212
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.12 E-value=6.2e-05 Score=77.65 Aligned_cols=133 Identities=8% Similarity=-0.094 Sum_probs=103.0
Q ss_pred HHHHHHHHhhhhcccccc--hHHHHHHHhcccccccccchhHHHHHHHhhhcccc-----ccccccceeeeeecccCcee
Q 007653 83 EEIATMRARIDAQMNYEF--NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG-----IHSSEGRTLLLACSLNSMSC 155 (594)
Q Consensus 83 ~el~aa~~~~~a~~~~~~--~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~-----~~~~e~~~l~~~~~~N~a~~ 155 (594)
.+++.|...+++.+...+ ...+.+...+.++++.|+++.|.+.+++..+.+|+ +. ..++++.+
T Consensus 114 g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~----------~l~~Laea 183 (310)
T 3mv2_B 114 GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNE----------MILNLAES 183 (310)
T ss_dssp TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHH----------HHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchH----------HHHHHHHH
Confidence 345567676666656554 78888999999999999999999999999888872 32 34555544
Q ss_pred --eeccc--cchhhhhhcceeeeeccc--chHHHHHhccchhhhhhHHHHhhhccccccc----------CCCCChHHHH
Q 007653 156 --YLKTK--QYDECIKVGSEVLAYDAK--NVKALYRRGQAYKDIGRLEEAVSDLSNAHEV----------SPDDGTIADV 219 (594)
Q Consensus 156 --~~klg--~y~eAi~~~~~AL~ldP~--~~ka~~~rg~al~~lg~~~eAi~~lekAl~l----------~P~~~~a~~~ 219 (594)
.+..| +|.+|+..|++++...|+ ....+++ ++..+|+|++|...++..+++ +|+++.+..+
T Consensus 184 ~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN 260 (310)
T 3mv2_B 184 YIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLAN 260 (310)
T ss_dssp HHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHH
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHH
Confidence 44445 999999999999888887 4556666 899999999999999988877 5888888877
Q ss_pred HhHHHHHhh
Q 007653 220 LRDAKEILM 228 (594)
Q Consensus 220 l~~a~~~l~ 228 (594)
+..+...++
T Consensus 261 ~i~l~~~lg 269 (310)
T 3mv2_B 261 QITLALMQG 269 (310)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 766655554
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.01 E-value=0.00021 Score=75.30 Aligned_cols=169 Identities=10% Similarity=0.043 Sum_probs=108.0
Q ss_pred hHHHHHHHHhcChh---HHHHhhhhhccCCCchhhhhhhh---hcCCChhHHHHHHHHhhc---------CChHHHHHHH
Q 007653 25 DFARIQQQMMANPE---LMRIATENMKNMRPEDLKCAAEQ---LTHTPPEEVAEIGEKLAN---------ASPEEIATMR 89 (594)
Q Consensus 25 ~l~r~~~~m~~~p~---l~r~A~e~mk~~~pe~~~~a~e~---l~~~~pee~~~~~~~~~~---------~~~~el~aa~ 89 (594)
+..+..+..-.|++ +.-++...+...+++++.++.+. ....+|+.........+. ........+.
T Consensus 182 e~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~ 261 (372)
T 3ly7_A 182 MQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALN 261 (372)
T ss_dssp HHHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHH
Confidence 34444444444554 33335555666677666654433 345566644433322111 1111222221
Q ss_pred Hhhh--hcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhh
Q 007653 90 ARID--AQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK 167 (594)
Q Consensus 90 ~~~~--a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~ 167 (594)
..+. ..+...+..+..+..++..++..|++++|+..+++|+.++|.. ..|.-+|.++.-.|++++|++
T Consensus 262 ~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~----------~a~~llG~~~~~~G~~~eA~e 331 (372)
T 3ly7_A 262 TEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSW----------LNYVLLGKVYEMKGMNREAAD 331 (372)
T ss_dssp HHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH----------HHHHHHHHHHHHCCCHHHHHH
Confidence 1121 2334456778888888888888999999999999999998643 367788999999999999999
Q ss_pred hcceeeeecccchHHHHHhccchh-hhhhHHHHhhhc
Q 007653 168 VGSEVLAYDAKNVKALYRRGQAYK-DIGRLEEAVSDL 203 (594)
Q Consensus 168 ~~~~AL~ldP~~~ka~~~rg~al~-~lg~~~eAi~~l 203 (594)
.|.+|+.++|.....++....+++ .+...+-++..|
T Consensus 332 ~~~~AlrL~P~~~t~~~~~~l~F~sn~~~i~~~~~~~ 368 (372)
T 3ly7_A 332 AYLTAFNLRPGANTLYWIENGIFQTSVPYVVPYLDKF 368 (372)
T ss_dssp HHHHHHHHSCSHHHHHHHHHSSSCCCHHHHCHHHHHH
T ss_pred HHHHHHhcCCCcChHHHHhCceeecchhhhHHHHHhc
Confidence 999999999998776666655553 555555555444
No 214
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.97 E-value=8.5e-05 Score=66.36 Aligned_cols=100 Identities=9% Similarity=-0.015 Sum_probs=79.7
Q ss_pred ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchh---HHHHHHHhhhcc-ccccccccceeeeeecccCceee
Q 007653 81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN---ALQKYLLAKKNL-QGIHSSEGRTLLLACSLNSMSCY 156 (594)
Q Consensus 81 ~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~e---Ai~~Y~kAL~l~-p~~~~~e~~~l~~~~~~N~a~~~ 156 (594)
.++++..+..+|...+.......+..++.+..+.+..+..+ +|..++..+... |... -.|.+.+|..|
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~--------Rd~lY~LAvg~ 84 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ--------RDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH--------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchH--------HHHHHHHHHHH
Confidence 34556667777777766556778889999999988877766 999999998875 4221 34889999999
Q ss_pred eccccchhhhhhcceeeeecccchHHHHHhcc
Q 007653 157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQ 188 (594)
Q Consensus 157 ~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~ 188 (594)
+++|+|.+|+.+++..|+++|+|..+...+..
T Consensus 85 yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQTEPQNNQAKELERL 116 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999999999887655443
No 215
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.95 E-value=0.00011 Score=66.13 Aligned_cols=81 Identities=11% Similarity=0.131 Sum_probs=67.7
Q ss_pred cccCceeeeccc---cchhhhhhcceeeeecc-cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHH
Q 007653 149 SLNSMSCYLKTK---QYDECIKVGSEVLAYDA-KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK 224 (594)
Q Consensus 149 ~~N~a~~~~klg---~y~eAi~~~~~AL~ldP-~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~ 224 (594)
.+|.|.|+.+.. +..++|..++..++.+| ..-+++|.+|.+++++|+|++|+.+++.+|+++|+|..+......++
T Consensus 43 ~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie 122 (134)
T 3o48_A 43 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE 122 (134)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 344444444443 55678888888888888 46889999999999999999999999999999999999999999988
Q ss_pred HHhhh
Q 007653 225 EILMK 229 (594)
Q Consensus 225 ~~l~~ 229 (594)
.++.+
T Consensus 123 ~ki~k 127 (134)
T 3o48_A 123 DKIQK 127 (134)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88754
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.88 E-value=7.9e-05 Score=80.31 Aligned_cols=94 Identities=7% Similarity=-0.039 Sum_probs=71.5
Q ss_pred ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeec-
Q 007653 98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD- 176 (594)
Q Consensus 98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ld- 176 (594)
.++..+..+.++|..|..+|+|++|+.+|+++|.+....- .+.+...+..++|+|.+|..+|+|++|+..|.+|+++-
T Consensus 324 ~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~l-g~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~ 402 (429)
T 3qwp_A 324 INIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF-PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR 402 (429)
T ss_dssp TSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHS-CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHc-CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999999998653221 11223346689999999999999999999999999762
Q ss_pred ----ccc---hHHHHHhccchhh
Q 007653 177 ----AKN---VKALYRRGQAYKD 192 (594)
Q Consensus 177 ----P~~---~ka~~~rg~al~~ 192 (594)
|++ .+.+.+++.++..
T Consensus 403 ~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 403 VTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHHHHH
Confidence 333 4444445555443
No 217
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.67 E-value=0.0003 Score=63.96 Aligned_cols=82 Identities=11% Similarity=0.130 Sum_probs=69.7
Q ss_pred ecccCceeeeccc---cchhhhhhcceeeeecc-cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007653 148 CSLNSMSCYLKTK---QYDECIKVGSEVLAYDA-KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 223 (594)
Q Consensus 148 ~~~N~a~~~~klg---~y~eAi~~~~~AL~ldP-~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a 223 (594)
+.+|.|.|+.+.. +-.++|..++..++.+| ..-+++|.+|.+++++|+|++|+.+++..|+++|+|..+......+
T Consensus 41 t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 120 (144)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 4566666666655 44578888888888777 5788999999999999999999999999999999999999999998
Q ss_pred HHHhhh
Q 007653 224 KEILMK 229 (594)
Q Consensus 224 ~~~l~~ 229 (594)
+.++.+
T Consensus 121 e~~i~k 126 (144)
T 1y8m_A 121 EDKIQK 126 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888754
No 218
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.66 E-value=0.00034 Score=75.44 Aligned_cols=109 Identities=12% Similarity=0.047 Sum_probs=29.2
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch
Q 007653 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180 (594)
Q Consensus 101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ 180 (594)
+....+...+..+...|+|++|+.+|..+++..+. + .+...++.||.++|++.++.+.+.. | +.
T Consensus 59 ~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~---------~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~ 122 (449)
T 1b89_A 59 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-S---------YVETELIFALAKTNRLAELEEFING-----P-NN 122 (449)
T ss_dssp ------------------------------------------------------------CHHHHTTTTTC-----C---
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-c---------hhHHHHHHHHHHhCCHHHHHHHHcC-----C-cH
Confidence 34556777777777777777777777777664322 1 2456777788888888887777753 3 33
Q ss_pred HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 233 (594)
Q Consensus 181 ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a 233 (594)
.+|..+|.++...|+|++|+.+|.++ ..+..++.+...+++++++
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~A 167 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAA 167 (449)
T ss_dssp --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHH
Confidence 47888888888888888888888766 3566666666666665543
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.63 E-value=0.00011 Score=79.35 Aligned_cols=77 Identities=10% Similarity=-0.083 Sum_probs=64.2
Q ss_pred ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee
Q 007653 98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY 175 (594)
Q Consensus 98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l 175 (594)
.++..+..+.++|.+|..+|+|++|+.+|+++|++....-. ..+...+..|+|+|.+|..+|+|++|+..|++|+++
T Consensus 335 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG-~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 335 SNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYP-VYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC-SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 57788999999999999999999999999999986532211 112234668999999999999999999999999976
No 220
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.32 E-value=0.00066 Score=60.96 Aligned_cols=101 Identities=8% Similarity=-0.005 Sum_probs=75.6
Q ss_pred ChHHHHHHHHhhhhcccccchHHHHHHHhccccccccc---chhHHHHHHHhhhccccccccccceeeeeecccCceeee
Q 007653 81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR---FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL 157 (594)
Q Consensus 81 ~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~---y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~ 157 (594)
.++++..+.++|+..+ ...-.++..++.+..+.+..+ ..++|..++..++..|... -.|++.+|..|+
T Consensus 19 ~~eeL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~--------Rd~LYyLAvg~y 89 (134)
T 3o48_A 19 YPQQLEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR--------RECLYYLTIGCY 89 (134)
T ss_dssp CHHHHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH--------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchh--------HHHHHHHHHHHH
Confidence 4455555666666665 333346777788877766554 4679999999988776432 348899999999
Q ss_pred ccccchhhhhhcceeeeecccchHHHHHhccch
Q 007653 158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY 190 (594)
Q Consensus 158 klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al 190 (594)
++|+|.+|..+++..|+++|+|..+...+..+-
T Consensus 90 klgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie 122 (134)
T 3o48_A 90 KLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE 122 (134)
T ss_dssp HHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 999999999999999999999998766554443
No 221
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.15 E-value=0.00026 Score=66.04 Aligned_cols=103 Identities=12% Similarity=0.095 Sum_probs=78.6
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeec---cc--
Q 007653 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD---AK-- 178 (594)
Q Consensus 104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ld---P~-- 178 (594)
..++.....++..+.|+.|+-.+..++.+...+++.-.-...+.+++.+|.+++..++|..|+..|++||.+. ++
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3466677778899999999999999887765543211112223467889999999999999999999986442 11
Q ss_pred --------------------chHHHHHhccchhhhhhHHHHhhhcccc
Q 007653 179 --------------------NVKALYRRGQAYKDIGRLEEAVSDLSNA 206 (594)
Q Consensus 179 --------------------~~ka~~~rg~al~~lg~~~eAi~~lekA 206 (594)
..+..|..+.||..++++++|+..++..
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1267899999999999999999998864
No 222
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.97 E-value=0.0013 Score=59.80 Aligned_cols=98 Identities=8% Similarity=0.035 Sum_probs=73.6
Q ss_pred ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccc---hhHHHHHHHhhhccccccccccceeeeeecccCceeee
Q 007653 81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRF---SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL 157 (594)
Q Consensus 81 ~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y---~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~ 157 (594)
.++++..+..+|..... .....+..++.+..+.+..+. .++|..++..+...|... -.|.+.+|..|+
T Consensus 18 ~~eeL~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~--------RdcLYyLAvg~y 88 (144)
T 1y8m_A 18 YPQQLEILRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR--------RECLYYLTIGCY 88 (144)
T ss_dssp CHHHHHHHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTH--------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccch--------hHHHHHHHHHHH
Confidence 44445555566665522 245577888888888776654 579999999988766432 348899999999
Q ss_pred ccccchhhhhhcceeeeecccchHHHHHhc
Q 007653 158 KTKQYDECIKVGSEVLAYDAKNVKALYRRG 187 (594)
Q Consensus 158 klg~y~eAi~~~~~AL~ldP~~~ka~~~rg 187 (594)
++|+|.+|..+++..|+++|+|..+...+.
T Consensus 89 kl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~ 118 (144)
T 1y8m_A 89 KLGEYSMAKRYVDTLFEHERNNKQVGALKS 118 (144)
T ss_dssp TTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 999999999999999999999988755443
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.67 E-value=0.0021 Score=65.40 Aligned_cols=134 Identities=8% Similarity=-0.041 Sum_probs=93.3
Q ss_pred hhhhhhcCCChhHHHHHHHH-----hh-cC------ChHHHHHHHHhhhhcccccch--HHHHHHHhccccccc-----c
Q 007653 57 CAAEQLTHTPPEEVAEIGEK-----LA-NA------SPEEIATMRARIDAQMNYEFN--AAKMLKKQGNELYSE-----G 117 (594)
Q Consensus 57 ~a~e~l~~~~pee~~~~~~~-----~~-~~------~~~el~aa~~~~~a~~~~~~~--~a~~l~~~Gn~~~~~-----g 117 (594)
...+.+.+..++..+.++=. -| .. ....+..+...+.+.++..++ ...+|.-+|..|.+. |
T Consensus 139 ~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gG 218 (301)
T 3u64_A 139 RLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGG 218 (301)
T ss_dssp HHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTC
T ss_pred hHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCC
Confidence 34555666667766654322 11 11 222344566777777777777 556999999999885 9
Q ss_pred cchhHHHHHHHhhhccccccccccceeeeeecccCceeeec-cccchhhhhhcceeeeecccc-hHHHHHhccchhhhhh
Q 007653 118 RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK-TKQYDECIKVGSEVLAYDAKN-VKALYRRGQAYKDIGR 195 (594)
Q Consensus 118 ~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k-lg~y~eAi~~~~~AL~ldP~~-~ka~~~rg~al~~lg~ 195 (594)
+.++|..+|++||+++|+.. +..++..|..|.. .++++++...+++||.++|.. + +..+...++
T Consensus 219 d~ekA~~~ferAL~LnP~~~--------id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P------~~~lan~~~ 284 (301)
T 3u64_A 219 GMEKAHTAFEHLTRYCSAHD--------PDHHITYADALCIPLNNRAGFDEALDRALAIDPESVP------HNKLLVILS 284 (301)
T ss_dssp CHHHHHHHHHHHHHHCCTTC--------SHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCS------SCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCC--------chHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCC------ChhHHHHHH
Confidence 99999999999999999641 2367888888877 499999999999999998874 3 233444445
Q ss_pred HHHHhhhcc
Q 007653 196 LEEAVSDLS 204 (594)
Q Consensus 196 ~~eAi~~le 204 (594)
-.+|...+.
T Consensus 285 q~eA~~LL~ 293 (301)
T 3u64_A 285 QKRARWLKA 293 (301)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.53 E-value=0.0028 Score=58.17 Aligned_cols=112 Identities=11% Similarity=-0.095 Sum_probs=86.3
Q ss_pred HHHHHHHhcccccccccc------hhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee
Q 007653 102 AAKMLKKQGNELYSEGRF------SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY 175 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y------~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l 175 (594)
..+.|...-..+-+.|+. ++-++.|++|+...|... ...-.-.+.+|++.|.. ...++.++|.+.|..++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k-~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK-YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG-GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc-cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH
Confidence 344454444444444665 788899999999888764 23334445566666644 6779999999999999998
Q ss_pred cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653 176 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215 (594)
Q Consensus 176 dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~ 215 (594)
+...++.|...|.--.+.|+...|.+.+.+|+.+.|...+
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 8889999999999889999999999999999999987543
No 225
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=93.90 E-value=0.0085 Score=68.16 Aligned_cols=128 Identities=9% Similarity=-0.102 Sum_probs=100.3
Q ss_pred HhhhhcccccchHHHHHHHhcccccccccchhHH-HHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhh
Q 007653 90 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNAL-QKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKV 168 (594)
Q Consensus 90 ~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi-~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~ 168 (594)
..|.+.+...+..++.|...+..+...|+..+|+ ..|.+|+..+|... .+|+..+.++.+.+++++|...
T Consensus 330 ~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~---------~Lwl~~a~~ee~~~~~e~aR~i 400 (679)
T 4e6h_A 330 YVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSA---------VLAFSLSEQYELNTKIPEIETT 400 (679)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHhCCHHHHHHH
Confidence 4455666667777889999999998999999998 99999999998773 4678888899999999999999
Q ss_pred cceeeeec-----------c-----------cchHHHHHhccchhhhhhHHHHhhhccccccc-CCCCChHHHHHhHHHH
Q 007653 169 GSEVLAYD-----------A-----------KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV-SPDDGTIADVLRDAKE 225 (594)
Q Consensus 169 ~~~AL~ld-----------P-----------~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l-~P~~~~a~~~l~~a~~ 225 (594)
|+++|..- | +....|...+....+.|..+.|...|.+|++. .+....++.....++.
T Consensus 401 yek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~ 480 (679)
T 4e6h_A 401 ILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY 480 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 99999752 4 24557788888888899999999999999887 3333455544444443
Q ss_pred H
Q 007653 226 I 226 (594)
Q Consensus 226 ~ 226 (594)
.
T Consensus 481 ~ 481 (679)
T 4e6h_A 481 H 481 (679)
T ss_dssp T
T ss_pred H
Confidence 3
No 226
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.31 E-value=0.013 Score=54.53 Aligned_cols=88 Identities=16% Similarity=0.270 Sum_probs=62.5
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhcccccccccc----------------ceeeeeecccCceeeeccccchhh
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG----------------RTLLLACSLNSMSCYLKTKQYDEC 165 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~----------------~~l~~~~~~N~a~~~~klg~y~eA 165 (594)
.++.+...|+.+|.+++|..|+..|++||++....+.... ......+.+.++.||.+++++++|
T Consensus 62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A 141 (167)
T 3ffl_A 62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA 141 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence 4678899999999999999999999999886653321100 000113668899999999999999
Q ss_pred hhhcceeeeecccchHHHHHhccch
Q 007653 166 IKVGSEVLAYDAKNVKALYRRGQAY 190 (594)
Q Consensus 166 i~~~~~AL~ldP~~~ka~~~rg~al 190 (594)
|..++. |-..-..++...-+|..|
T Consensus 142 i~~Le~-Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 142 IAILDG-IPSRQRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHT-SCGGGCCHHHHHHHHHHC
T ss_pred HHHHhc-CCchhcCHHHHHHHHHHh
Confidence 998765 333345666666666655
No 227
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.41 E-value=0.011 Score=62.67 Aligned_cols=102 Identities=13% Similarity=0.023 Sum_probs=73.0
Q ss_pred HHHHhcccccccccchhHHHHHHHhhhccccccccc-------------cceeeeeecccCceeeeccccchhhhhhcce
Q 007653 105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE-------------GRTLLLACSLNSMSCYLKTKQYDECIKVGSE 171 (594)
Q Consensus 105 ~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e-------------~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~ 171 (594)
.+...|......|+...|+..|.+|+.+.....-.. ..+....+...++.+++..|+|.+++..+.+
T Consensus 117 ~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~ 196 (388)
T 2ff4_A 117 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA 196 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344444445556778888888888887754332100 1122233444566777888999999999999
Q ss_pred eeeecccchHHHHHhccchhhhhhHHHHhhhcccc
Q 007653 172 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA 206 (594)
Q Consensus 172 AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekA 206 (594)
++..+|-+-.+|..+-.+|+..|+..+|+..|+++
T Consensus 197 ~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 197 LTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999889999999999999999998888775
No 228
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=91.95 E-value=0.026 Score=64.22 Aligned_cols=118 Identities=8% Similarity=-0.077 Sum_probs=88.8
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc-cchhhhhhcceeeeecccch
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-QYDECIKVGSEVLAYDAKNV 180 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg-~y~eAi~~~~~AL~ldP~~~ 180 (594)
....|....+...+.+..+.|...|.+|++..|... ..+|...+....+.+ +++.|...|+++|+..|+++
T Consensus 433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~--------~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~ 504 (679)
T 4e6h_A 433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT--------PDIYLENAYIEYHISKDTKTACKVLELGLKYFATDG 504 (679)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC--------THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC--------hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCch
Confidence 344677777777788889999999999998733221 124555555555554 59999999999999999999
Q ss_pred HHHHHhccchhhhhhHHHHhhhcccccccCCC---CChHHHHHhHHHHHh
Q 007653 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD---DGTIADVLRDAKEIL 227 (594)
Q Consensus 181 ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~---~~~a~~~l~~a~~~l 227 (594)
..+...+..+...|+.+.|...|++|+...|+ ...++..+...+...
T Consensus 505 ~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~ 554 (679)
T 4e6h_A 505 EYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKV 554 (679)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Confidence 98888888888899999999999999999884 344555554444443
No 229
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=85.78 E-value=0.11 Score=56.77 Aligned_cols=80 Identities=9% Similarity=-0.080 Sum_probs=71.6
Q ss_pred ecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227 (594)
Q Consensus 148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l 227 (594)
|..++|.+.+....+..|..+|.+|+.++|++...|..+|......|++-+|+-+|-+++.....++.++.+|..+..+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence 45667777777778899999999999999999999999999999999999999999999998888899999998876665
No 230
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=82.74 E-value=0.12 Score=56.15 Aligned_cols=127 Identities=10% Similarity=-0.024 Sum_probs=73.4
Q ss_pred HhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccc--------cccee-----------------
Q 007653 90 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS--------EGRTL----------------- 144 (594)
Q Consensus 90 ~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~--------e~~~l----------------- 144 (594)
..|.+.+...+..+..|...+..+...|+.++|...|.+|+.. |..... +...+
T Consensus 200 ~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~ 278 (493)
T 2uy1_A 200 FIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAE 278 (493)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC--------
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhh
Confidence 3444445455666788888888889999999999999999999 775320 00000
Q ss_pred ------eeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhh-hHHHHhhhcccccccCCCCChHH
Q 007653 145 ------LLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-RLEEAVSDLSNAHEVSPDDGTIA 217 (594)
Q Consensus 145 ------~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg-~~~eAi~~lekAl~l~P~~~~a~ 217 (594)
...+|...+..+.+.+.++.|...|.+| ...+...+.|...+.....++ +++.|...|+.+++..|+.+..+
T Consensus 279 ~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~ 357 (493)
T 2uy1_A 279 KVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLK 357 (493)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHH
Confidence 0011222222233445566666666666 222223344444444444445 36677777777777666665543
Q ss_pred H
Q 007653 218 D 218 (594)
Q Consensus 218 ~ 218 (594)
.
T Consensus 358 ~ 358 (493)
T 2uy1_A 358 E 358 (493)
T ss_dssp H
T ss_pred H
Confidence 3
No 231
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.57 E-value=0.2 Score=53.48 Aligned_cols=103 Identities=11% Similarity=-0.073 Sum_probs=79.5
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeec----
Q 007653 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD---- 176 (594)
Q Consensus 101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ld---- 176 (594)
.....+..+|..+++.|+|.+|+++|.++......... .+.++.+.-.+++..++|..+...+.++..+-
T Consensus 129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~------kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~ 202 (429)
T 4b4t_R 129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA------KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGG 202 (429)
T ss_dssp CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCC
Confidence 34557888999999999999999999999876544321 24567778888888999999999999986542
Q ss_pred -cc-chHHHHHhccchhhhhhHHHHhhhccccccc
Q 007653 177 -AK-NVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 209 (594)
Q Consensus 177 -P~-~~ka~~~rg~al~~lg~~~eAi~~lekAl~l 209 (594)
|. ..+.....|..+...++|.+|..+|-.++.-
T Consensus 203 d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 203 DWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp CTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11 1345666788889999999999998877654
No 232
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=78.15 E-value=2 Score=33.02 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=14.9
Q ss_pred HHHhcCcHHHHHHHHHHhh
Q 007653 484 MRNQMNDPAMKQMFSSMVK 502 (594)
Q Consensus 484 m~~~m~~p~m~~m~~~mmk 502 (594)
+.+.|+||.+++.+..+++
T Consensus 37 ~~~~~~dP~v~~~~~~L~~ 55 (62)
T 2lnm_A 37 IMKYQNDKEVMDVFNKISQ 55 (62)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHHH
Confidence 6678888888888877764
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=78.14 E-value=0.33 Score=55.63 Aligned_cols=56 Identities=11% Similarity=0.173 Sum_probs=50.7
Q ss_pred CceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhccccc
Q 007653 152 SMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAH 207 (594)
Q Consensus 152 ~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl 207 (594)
.+..++..++|+-|+....+|+.+-|...+.|+.++.||..+|+|+.|+-.+..+-
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34555677999999999999999999999999999999999999999999888774
No 234
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.96 E-value=1 Score=49.22 Aligned_cols=56 Identities=9% Similarity=-0.007 Sum_probs=41.6
Q ss_pred ccchhhhhhcceeeee-----cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653 160 KQYDECIKVGSEVLAY-----DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215 (594)
Q Consensus 160 g~y~eAi~~~~~AL~l-----dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~ 215 (594)
+.|+.|.....++.-. +...+.++|..|.++.-.++|.+|.++|..|+...|.+..
T Consensus 245 ~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 245 GEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp SCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred CcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 3455555555554311 1233788999999999999999999999999999987653
No 235
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=74.29 E-value=4.5 Score=32.01 Aligned_cols=40 Identities=23% Similarity=0.396 Sum_probs=28.9
Q ss_pred HHHHhcCcHHHHHHHHHHhhcCCHHHHhhhhhhhccccchhhHHHHHH
Q 007653 483 QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQ 530 (594)
Q Consensus 483 ~m~~~m~~p~m~~m~~~mmk~m~p~~~~~m~~~~g~~~~~~~a~~~~~ 530 (594)
.+..+|+||.|+..+.+++.| |..+..... +|+-+.+.++
T Consensus 21 Ei~~im~DP~~~~~lq~~~~N--P~~~~k~~~------nP~v~~~i~k 60 (71)
T 2llw_A 21 EVAAIMQDPVMQSILQQAQQN--PAALQEHMK------NPEVFKKIQT 60 (71)
T ss_dssp HHHHHHTCTHHHHHHHHHHHC--HHHHHHHHH------SHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHC--HHHHHHHHh------CHHHHHHHHH
Confidence 677899999999999999998 877655332 4555544444
No 236
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=74.17 E-value=0.81 Score=45.78 Aligned_cols=68 Identities=18% Similarity=0.084 Sum_probs=60.5
Q ss_pred eeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007653 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 223 (594)
Q Consensus 156 ~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a 223 (594)
+++.+...+|+..+...|+-+|.+++....+-..|+-.|+|+.|.+-++.+.+++|+....-..+..+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l 74 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL 74 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999986655444333
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=72.18 E-value=0.63 Score=53.30 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=52.6
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcce
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE 171 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~ 171 (594)
...+..++..+..+|+|+-|+.+-++|+...|.. ..+|+.|+.||.++|+|+.|+-.+.-
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPse---------F~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDS---------FESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC---------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchh---------hHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 4567778888999999999999999999999988 55999999999999999999865433
No 238
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=70.43 E-value=3.3 Score=32.82 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=24.8
Q ss_pred ChhhhchhHHHhhhcChHHHHHHH------HHHHhhhh
Q 007653 385 RPDMLKTASDVMSKMSSEDLQKMF------EMESTLKN 416 (594)
Q Consensus 385 ~P~m~~~a~~mm~nm~pe~l~~m~------~ma~~~~~ 416 (594)
||+|+.+++++++| |..+++.+ .+...+..
T Consensus 28 DP~~~~~lq~~~~N--P~~~~k~~~nP~v~~~i~kl~~ 63 (71)
T 2llw_A 28 DPVMQSILQQAQQN--PAALQEHMKNPEVFKKIQTLIA 63 (71)
T ss_dssp CTHHHHHHHHHHHC--HHHHHHHHHSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHC--HHHHHHHHhCHHHHHHHHHHHH
Confidence 99999999999999 99998865 55555543
No 239
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=69.52 E-value=0.72 Score=50.33 Aligned_cols=80 Identities=13% Similarity=-0.115 Sum_probs=70.2
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHH
Q 007653 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL 183 (594)
Q Consensus 104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~ 183 (594)
..+..+|........+..|..+|.+|+.+.|... ..|+-+|.++...+++-+|+-+|.++|.....++.+.
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G---------~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~ 223 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG---------QPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAS 223 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS---------HHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCC---------chHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHH
Confidence 4567788888888889999999999999999985 4899999999999999999999999998888889988
Q ss_pred HHhccchhh
Q 007653 184 YRRGQAYKD 192 (594)
Q Consensus 184 ~~rg~al~~ 192 (594)
-++...+..
T Consensus 224 ~nL~~~f~~ 232 (497)
T 1ya0_A 224 TNLQKALSK 232 (497)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777654
No 240
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=68.11 E-value=0.3 Score=45.65 Aligned_cols=100 Identities=19% Similarity=0.180 Sum_probs=70.6
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceee--ee------
Q 007653 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL--AY------ 175 (594)
Q Consensus 104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL--~l------ 175 (594)
+...-.+..++-.|.|..++-++... +. +...+-.+.||.++++|..|+..++..| ++
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~l---NT-----------~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~ 99 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHKL---NT-----------CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDV 99 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHTC---CB-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCC
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHhc---ch-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccc
Confidence 44455666677778888777665432 11 1233456778889999999988888777 22
Q ss_pred ---------cccchHHHHH-hccchhhhhhHHHHhhhcccccccCCCCChHH
Q 007653 176 ---------DAKNVKALYR-RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA 217 (594)
Q Consensus 176 ---------dP~~~ka~~~-rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~ 217 (594)
||.+-+.+++ +|..+..+|..+||+.++.....++|-.+.+.
T Consensus 100 d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE 151 (242)
T 3kae_A 100 DARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE 151 (242)
T ss_dssp CHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred ccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence 3555555544 58888899999999999999999888766554
No 241
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=67.62 E-value=0.6 Score=50.76 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=76.4
Q ss_pred HHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHH-
Q 007653 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY- 184 (594)
Q Consensus 106 l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~- 184 (594)
+...|..+|..|.|+.|.-+|... .-|..++.|+.++++|..|++..++|- ++.-+|-.+
T Consensus 147 iq~VGDrcf~e~lYeAAKilys~i-----------------sN~akLAstLV~L~~yq~AVdaArKAn--s~ktWKeV~~ 207 (624)
T 3lvg_A 147 IQQVGDRCYDEKMYDAAKLLYNNV-----------------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCF 207 (624)
T ss_dssp THHHHHHHHHSCCSTTSSTTGGGS-----------------CCCTTTSSSSSSCSGGGSSTTTTTTCC--SSCSHHHHTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHhC-----------------ccHHHHHHHHHHHHHHHHHHHHHHhcC--ChhHHHHHHH
Confidence 556788899999999998888653 237889999999999999999999985 222222111
Q ss_pred --------------------------HhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007653 185 --------------------------RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226 (594)
Q Consensus 185 --------------------------~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~ 226 (594)
-+-.-|-..|.|+|-+..++.++.++-.+--+-..|+.+..+
T Consensus 208 ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 208 ACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred HHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh
Confidence 133446668889999999999998887777777777776443
No 242
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=65.38 E-value=0.34 Score=51.34 Aligned_cols=98 Identities=13% Similarity=0.088 Sum_probs=77.0
Q ss_pred HhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeec------c-cch
Q 007653 108 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD------A-KNV 180 (594)
Q Consensus 108 ~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ld------P-~~~ 180 (594)
.+|..|+..|+|.+|+..|.+.++......+ ..++..+|.....+|..++++.++...|++|.... | -.+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd---~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDD---KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC---THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhcccc---chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 6888999999999999999999886655321 33445577888888999999999999998886543 2 134
Q ss_pred HHHHHhccchh-hhhhHHHHhhhcccccc
Q 007653 181 KALYRRGQAYK-DIGRLEEAVSDLSNAHE 208 (594)
Q Consensus 181 ka~~~rg~al~-~lg~~~eAi~~lekAl~ 208 (594)
.....-|..|. ..++|..|..+|-.+++
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 45666788899 89999999999988763
No 243
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=62.18 E-value=1.7 Score=47.00 Aligned_cols=111 Identities=8% Similarity=-0.079 Sum_probs=79.2
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc-cchhhhhhcceeeeecccchHH
Q 007653 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-QYDECIKVGSEVLAYDAKNVKA 182 (594)
Q Consensus 104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg-~y~eAi~~~~~AL~ldP~~~ka 182 (594)
..+........+.+..+.|...|.+| . .|... ..+|...+...+..+ +++.|...|+.+++..|+.++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~--------~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~ 356 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVG--------PHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLL 356 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCC--------HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCC--------hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHH
Confidence 44555666666678889999999999 3 33221 224555555555556 6999999999999988988887
Q ss_pred HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653 183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 228 (594)
Q Consensus 183 ~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~ 228 (594)
+...+.-+..+|+.+.|...|+++. ....++......+...+
T Consensus 357 ~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G 398 (493)
T 2uy1_A 357 KEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVG 398 (493)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC
Confidence 7777777778899999999999983 34556665555554443
No 244
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=59.95 E-value=5.3 Score=44.63 Aligned_cols=95 Identities=12% Similarity=-0.073 Sum_probs=66.9
Q ss_pred HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHH
Q 007653 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL 183 (594)
Q Consensus 104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~ 183 (594)
.....++..++..+...++...+.+++.....+. ..-.++...++.+++..|...+.+.-.-........
T Consensus 253 ~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~ 322 (618)
T 1qsa_A 253 ELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS----------LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWR 322 (618)
T ss_dssp HHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH----------HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHhccccCCChH----------HHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHH
Confidence 3444556666776756677777777654322221 111222234567999999999987665445678899
Q ss_pred HHhccchhhhhhHHHHhhhcccccc
Q 007653 184 YRRGQAYKDIGRLEEAVSDLSNAHE 208 (594)
Q Consensus 184 ~~rg~al~~lg~~~eAi~~lekAl~ 208 (594)
|.+|.++..+|+.++|...|+++..
T Consensus 323 YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 323 YWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999999999999999999875
No 245
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=56.91 E-value=11 Score=28.66 Aligned_cols=25 Identities=12% Similarity=0.308 Sum_probs=21.1
Q ss_pred HHHHhcCcHHHHHHHHHHhhcCCHHHH
Q 007653 483 QMRNQMNDPAMKQMFSSMVKNMSPEMM 509 (594)
Q Consensus 483 ~m~~~m~~p~m~~m~~~mmk~m~p~~~ 509 (594)
.....|+||.++++++++++| |..+
T Consensus 13 e~~~~m~dP~~~~~lq~i~~N--P~~~ 37 (62)
T 2lnm_A 13 DVAMAFQNPRVQAALMECSEN--PMNI 37 (62)
T ss_dssp HHHHHTTSHHHHHHHHHHTTC--GGGH
T ss_pred HHHHHcCCHHHHHHHHHHHHC--HHHH
Confidence 588999999999999999988 6544
No 246
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=54.97 E-value=1.9 Score=46.85 Aligned_cols=100 Identities=8% Similarity=-0.001 Sum_probs=75.7
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhc--cccccccccceeeeeecccCceeeeccccchhhhhhcceeeee--ccc
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKN--LQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--DAK 178 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l--~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l--dP~ 178 (594)
...+..+-..+.+.|++++|+..|.+..+. .|+ ...|..+-.+|.+.|++++|.+.+++.++. .|
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P- 173 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR----------LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP- 173 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC-
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc----------cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-
Confidence 345666667788999999999999987653 233 336777778888999999999999887643 33
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccc--cCCCC
Q 007653 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHE--VSPDD 213 (594)
Q Consensus 179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~--l~P~~ 213 (594)
+...|..+-.+|.+.|++++|.+.|++--+ +.|+.
T Consensus 174 d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~ 210 (501)
T 4g26_A 174 EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSK 210 (501)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCH
T ss_pred CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCH
Confidence 556777888899999999999999987533 45543
No 247
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=49.19 E-value=3.6 Score=34.18 Aligned_cols=30 Identities=27% Similarity=0.264 Sum_probs=24.8
Q ss_pred cchHHHHHhccchhhhhhHHHHhhhccccc
Q 007653 178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAH 207 (594)
Q Consensus 178 ~~~ka~~~rg~al~~lg~~~eAi~~lekAl 207 (594)
+.+..+-+++..+...|+|++||++.++|.
T Consensus 13 n~AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 13 NLAHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 357788899999999999999988777664
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=46.11 E-value=1.6 Score=52.39 Aligned_cols=104 Identities=10% Similarity=0.008 Sum_probs=70.4
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhcccccc-c-------------cccceeeeeecccCceeeeccccchhhh
Q 007653 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIH-S-------------SEGRTLLLACSLNSMSCYLKTKQYDECI 166 (594)
Q Consensus 101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~-~-------------~e~~~l~~~~~~N~a~~~~klg~y~eAi 166 (594)
..+...+-+|.+++..|+|++|..+|.++-.-..... . ......+...|+.+...+.+.+.|+.++
T Consensus 840 ~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi 919 (1139)
T 4fhn_B 840 SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDAL 919 (1139)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHH
T ss_pred CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHH
Confidence 3344568899999999999999999999854221110 0 0011222234556666777778899999
Q ss_pred hhcceeeeecccch-----HHHHHhccchhhhhhHHHHhhhcc
Q 007653 167 KVGSEVLAYDAKNV-----KALYRRGQAYKDIGRLEEAVSDLS 204 (594)
Q Consensus 167 ~~~~~AL~ldP~~~-----ka~~~rg~al~~lg~~~eAi~~le 204 (594)
+....||...+.+. ..|.+.=.++..+++|++|...+-
T Consensus 920 ~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 920 EFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 88888886543221 257777788889999999877764
No 249
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=45.29 E-value=4.3 Score=40.49 Aligned_cols=115 Identities=10% Similarity=0.001 Sum_probs=65.6
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec---ccc
Q 007653 85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK---TKQ 161 (594)
Q Consensus 85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k---lg~ 161 (594)
+..+...+..+++.+|..+.....+-..++-.|+|+.|+..+.-..+++|.... .+..|.. ...
T Consensus 13 L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~-------------~a~~yr~lI~aE~ 79 (273)
T 1zbp_A 13 LQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP-------------GASQLRHLVKAAQ 79 (273)
T ss_dssp HHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH-------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH-------------HHHHHHHHHHHHH
Confidence 444555566666667777777777777777778888888887777777776531 1111111 112
Q ss_pred chhhhhhccee--eeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007653 162 YDECIKVGSEV--LAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212 (594)
Q Consensus 162 y~eAi~~~~~A--L~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~ 212 (594)
+.+.+-.-.+. +--.|.........+......|++++|.....+|++..|.
T Consensus 80 ~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 80 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 22222111111 1113444555555666666677777777777777666554
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=44.39 E-value=4.8 Score=42.09 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=56.0
Q ss_pred chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchHHHHHHhh
Q 007653 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEV 248 (594)
Q Consensus 179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~iee~~e~~ 248 (594)
...++..++.++..+|++++|+..+++++..+|-+..++..+-.+....++...+...|...-....++-
T Consensus 170 ~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eL 239 (388)
T 2ff4_A 170 KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDL 239 (388)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 4456777888999999999999999999999999999999999998888877666655555544444433
No 251
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=42.88 E-value=4 Score=45.67 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=26.1
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhh
Q 007653 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKK 131 (594)
Q Consensus 101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~ 131 (594)
+....|+.+|..+.+.++++.|+.+|.++-+
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 3456889999999999999999999998743
No 252
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=41.99 E-value=9.6 Score=30.95 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=26.1
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhc
Q 007653 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (594)
Q Consensus 101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (594)
+.+..+..+|..+=+.|+|.+|+.+|.++|++
T Consensus 17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 17 EMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34556777778888999999999999999885
No 253
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=41.04 E-value=10 Score=30.74 Aligned_cols=31 Identities=19% Similarity=0.173 Sum_probs=25.0
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhc
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (594)
.+..+..+|..+=+.|+|.+|+.+|.++|++
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3555777777888899999999999998875
No 254
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=40.36 E-value=15 Score=28.86 Aligned_cols=38 Identities=24% Similarity=0.471 Sum_probs=26.1
Q ss_pred HHHHhcCcHHHHHHHHHHhhc---------CCHHHHhhhhhhhcccc
Q 007653 483 QMRNQMNDPAMKQMFSSMVKN---------MSPEMMANMSEQFGIKL 520 (594)
Q Consensus 483 ~m~~~m~~p~m~~m~~~mmk~---------m~p~~~~~m~~~~g~~~ 520 (594)
..+..|+||++++++..+.+| -+|..+..|+.-+|+.+
T Consensus 24 ~t~~~~~DP~~~~~lq~i~~NP~~i~~~~~~dPrv~~~l~~L~g~~~ 70 (71)
T 2llv_A 24 KTSEMMKDPQLVAKLIGYKQNPQAIGQDLFTDPRLMTIMATLMGVDL 70 (71)
T ss_dssp TTHHHHHSCTHHHHHHHHHHSCTTHHHHTTTCHHHHHHHHHHHTTTT
T ss_pred HHHHHhcCHHHHHHHHHHHHCHHHHHHHHhhCcHHHHHHHHHHcCCC
Confidence 467789999999999888766 24555555555555543
No 255
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=35.16 E-value=52 Score=29.10 Aligned_cols=36 Identities=14% Similarity=0.086 Sum_probs=24.2
Q ss_pred chHHHHHHHhcccccccccchhHHHHHHHhhhcccc
Q 007653 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG 135 (594)
Q Consensus 100 ~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~ 135 (594)
.......-.+.|.......|.+|+..|...+.+.|.
T Consensus 96 L~~LD~AA~~~n~~~a~k~Y~~a~adfdafl~liP~ 131 (133)
T 3ls0_A 96 LERLDAAAKDRNGSQAKIQYQEALADFDSFLNLLPQ 131 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 333444455566666677788888888888888775
No 256
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=34.66 E-value=4.1 Score=38.13 Aligned_cols=86 Identities=14% Similarity=-0.027 Sum_probs=53.1
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch
Q 007653 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180 (594)
Q Consensus 101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ 180 (594)
+....|+.+|......|++.-|+.+|.++-.+ ..+...|.-.|+-+.-....+.+....
T Consensus 32 ~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~-----------------~~L~~Ly~~tg~~e~L~kla~iA~~~g---- 90 (177)
T 3mkq_B 32 NDSITWERLIQEALAQGNASLAEMIYQTQHSF-----------------DKLSFLYLVTGDVNKLSKMQNIAQTRE---- 90 (177)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH-----------------HHHHHHHHHHTCHHHHHHHHHHHHHTT----
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH-----------------HHHHHHHHHhCCHHHHHHHHHHHHHCc----
Confidence 34668999999999999999999999998543 223334444454444333332222111
Q ss_pred HHHHHhccchhhhhhHHHHhhhcccccc
Q 007653 181 KALYRRGQAYKDIGRLEEAVSDLSNAHE 208 (594)
Q Consensus 181 ka~~~rg~al~~lg~~~eAi~~lekAl~ 208 (594)
-+.....++..+|+++++++.|.+.-.
T Consensus 91 -~~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 91 -DFGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred -cHHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 112224456678888888887766543
No 257
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=33.90 E-value=16 Score=29.82 Aligned_cols=30 Identities=33% Similarity=0.306 Sum_probs=23.9
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhc
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (594)
+..+...+..+-..|+|.+|+.+|..+|++
T Consensus 16 A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 16 AATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445666777778889999999999999875
No 258
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=33.64 E-value=14 Score=32.02 Aligned_cols=30 Identities=27% Similarity=0.269 Sum_probs=22.1
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhc
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (594)
+..+..++...-..|+|.+|+.+|..++++
T Consensus 18 Ai~lv~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 18 AIDLASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445666666667778888888888888764
No 259
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=33.28 E-value=40 Score=35.95 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.5
Q ss_pred CCChhhhchhHHHhhhcChHHHHH
Q 007653 383 NMRPDMLKTASDVMSKMSSEDLQK 406 (594)
Q Consensus 383 ~~~P~m~~~a~~mm~nm~pe~l~~ 406 (594)
..+..-++..--+|..|||+++.+
T Consensus 366 ~~~~~~~~~~~~ii~smt~~e~~~ 389 (443)
T 3dm5_A 366 SIGEERLKKFKVIMDSMTEEELLN 389 (443)
T ss_dssp CCCHHHHHHHHHHHTTSCHHHHHC
T ss_pred hhhHHHHHHHHHHHHcCCHHHhcC
Confidence 347888899999999999999975
No 260
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=32.16 E-value=17 Score=29.32 Aligned_cols=31 Identities=13% Similarity=0.166 Sum_probs=24.0
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhc
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (594)
.+..+...+...-..|+|.+|+.+|..++++
T Consensus 12 ~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 12 KGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445666677777889999999999998874
No 261
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=31.92 E-value=17 Score=30.02 Aligned_cols=31 Identities=32% Similarity=0.302 Sum_probs=24.1
Q ss_pred HHHHHHHhcccccccccchhHHHHHHHhhhc
Q 007653 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (594)
Q Consensus 102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (594)
.+..+...+..+-..|+|.+|+.+|..++++
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555677777778888999999998888874
No 262
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=29.02 E-value=7.8 Score=35.45 Aligned_cols=68 Identities=9% Similarity=0.046 Sum_probs=52.1
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ 180 (594)
+..|...+.. ...++.++|-..|..++.+...+ +.+|...|....++|+...|...+.+||.+.|...
T Consensus 61 I~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkF---------AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 61 ARIQVRFAEL-KAIQEPDDARDYFQMARANCKKF---------AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTB---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHH---------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 3344444432 44489999999999999875554 45788888888999999999999999998777543
No 263
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=28.91 E-value=23 Score=29.45 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=24.5
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhc
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKN 132 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l 132 (594)
+-.+-.++..+.+.|+|++||+++.++..+
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~y 44 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATTY 44 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 445666777889999999999999998764
No 264
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=27.94 E-value=33 Score=35.01 Aligned_cols=111 Identities=5% Similarity=-0.075 Sum_probs=65.0
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhccccccc------cccceeeeeecccCceeeeccc----------cchhhh
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLLLACSLNSMSCYLKTK----------QYDECI 166 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~------~e~~~l~~~~~~N~a~~~~klg----------~y~eAi 166 (594)
.....+.|..++..|+|.+|+..|+.+|...+-..- .+..++...|.--+-.+-+.+. |--|-.
T Consensus 114 L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELA 193 (325)
T 3mv2_A 114 VNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELA 193 (325)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 344566888999999999999999999987653310 0111111111111000011110 111111
Q ss_pred hhcceeeeecccchHHHHHhccch-hhhhhHHHHhhhcccccccCCCCC
Q 007653 167 KVGSEVLAYDAKNVKALYRRGQAY-KDIGRLEEAVSDLSNAHEVSPDDG 214 (594)
Q Consensus 167 ~~~~~AL~ldP~~~ka~~~rg~al-~~lg~~~eAi~~lekAl~l~P~~~ 214 (594)
. |-.-.+|.|.+-..-.+.|... ++.++|.-|....++.|++.|...
T Consensus 194 A-YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 241 (325)
T 3mv2_A 194 A-YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP 241 (325)
T ss_dssp H-HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred H-HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 1 2222455666666556666555 578999999999999999998643
No 265
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=26.25 E-value=9.8 Score=41.13 Aligned_cols=91 Identities=10% Similarity=0.080 Sum_probs=69.3
Q ss_pred ccccccchhHHHHHHHhhhc--cccccccccceeeeeecccCceeeeccccchhhhhhcceeeeec-ccchHHHHHhccc
Q 007653 113 LYSEGRFSNALQKYLLAKKN--LQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD-AKNVKALYRRGQA 189 (594)
Q Consensus 113 ~~~~g~y~eAi~~Y~kAL~l--~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ld-P~~~ka~~~rg~a 189 (594)
..+.+.+++|...|.+-... .|+ ...|..+-.+|.+.|++++|++.+.+..+.. ..+...|..+-.+
T Consensus 80 ~~~~~~l~~A~~lf~~M~~~G~~Pd----------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~ 149 (501)
T 4g26_A 80 SSPNPGLSRGFDIFKQMIVDKVVPN----------EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFG 149 (501)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCCCC----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHHHHhCCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHH
Confidence 34567788999999887653 232 3467888889999999999999998876542 2256778888889
Q ss_pred hhhhhhHHHHhhhcccccc--cCCCC
Q 007653 190 YKDIGRLEEAVSDLSNAHE--VSPDD 213 (594)
Q Consensus 190 l~~lg~~~eAi~~lekAl~--l~P~~ 213 (594)
|.+.|++++|.+.|++-.+ +.|+.
T Consensus 150 ~~~~g~~~~A~~l~~~M~~~G~~Pd~ 175 (501)
T 4g26_A 150 FCRKGDADKAYEVDAHMVESEVVPEE 175 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCCH
Confidence 9999999999999987644 45553
No 266
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=25.12 E-value=24 Score=27.92 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=25.7
Q ss_pred HHHhcccccccccchhHHHHHHHhhhccccc
Q 007653 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGI 136 (594)
Q Consensus 106 l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~ 136 (594)
...+|..+..+|++++|+.+|.+||...|.-
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 3457778888899999999999999987654
No 267
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.52 E-value=17 Score=39.65 Aligned_cols=112 Identities=12% Similarity=-0.001 Sum_probs=68.0
Q ss_pred chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc
Q 007653 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 179 (594)
Q Consensus 100 ~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~ 179 (594)
...+.+++-.|.++.-+++|.+|.+++..|++..|..... ......++..+-.|.+-+|++.+--..-...++ ..
T Consensus 267 ~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a--~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~---~~ 341 (523)
T 4b4t_S 267 SLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKS--LGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQ---KS 341 (523)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSC--SHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCH---HH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhh--hhHHHHHHHHHHhHHhhcCCCCChHHhhchhHH---HH
Confidence 3457888899999999999999999999999988765320 001111222222233335655432222111111 12
Q ss_pred hHHHHHhccchh--hhhhHHHHhhhcccccccCCCCChH
Q 007653 180 VKALYRRGQAYK--DIGRLEEAVSDLSNAHEVSPDDGTI 216 (594)
Q Consensus 180 ~ka~~~rg~al~--~lg~~~eAi~~lekAl~l~P~~~~a 216 (594)
...|+.+..|+. .+..|+.++..++..+..|-.+.-+
T Consensus 342 L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI 380 (523)
T 4b4t_S 342 LLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQLC 380 (523)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChhHHH
Confidence 345777777764 5667888888888888877555433
No 268
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=24.09 E-value=6.7 Score=41.32 Aligned_cols=73 Identities=19% Similarity=0.295 Sum_probs=50.7
Q ss_pred cCceeeeccccchhhhhhcceeeee----c--ccchHHHHHhccchhhhhhHHHHhhhcccccccC---CCCChHHHHHh
Q 007653 151 NSMSCYLKTKQYDECIKVGSEVLAY----D--AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS---PDDGTIADVLR 221 (594)
Q Consensus 151 N~a~~~~klg~y~eAi~~~~~AL~l----d--P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~---P~~~~a~~~l~ 221 (594)
+++..|+..|+|.+|+..+.+.++- | ..-.+.|......|..++++.++...|.+|..+. +.++.+...+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 7788899999999998877776542 2 1234567777888888899999998888876543 23444544444
Q ss_pred HH
Q 007653 222 DA 223 (594)
Q Consensus 222 ~a 223 (594)
.+
T Consensus 184 ~~ 185 (394)
T 3txn_A 184 LQ 185 (394)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 269
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=23.68 E-value=26 Score=27.76 Aligned_cols=39 Identities=26% Similarity=0.355 Sum_probs=31.3
Q ss_pred HHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007653 184 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 222 (594)
Q Consensus 184 ~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~ 222 (594)
..+|..+...|++++|+.+|-+|+.+.|.=..+...+..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q~ 59 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQ 59 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 347999999999999999999999999876555554443
No 270
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.17 E-value=28 Score=30.10 Aligned_cols=60 Identities=15% Similarity=0.215 Sum_probs=35.2
Q ss_pred ccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC----ChHHHHHhHHHHHh
Q 007653 160 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD----GTIADVLRDAKEIL 227 (594)
Q Consensus 160 g~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~----~~a~~~l~~a~~~l 227 (594)
..|++|..+..+||++|-. |.-...+..|.+.|..|++++.+..+. ...|......+.++
T Consensus 17 ~~h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM 80 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKM 80 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 3466777777777766541 444444555666777777777777642 34455444444444
No 271
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=22.81 E-value=7 Score=42.00 Aligned_cols=99 Identities=11% Similarity=0.083 Sum_probs=68.8
Q ss_pred ccccchhHHHHHHHhhhccccccccc-------cceeeeeecccCceeeeccccchhhhhhccee--------eeecc--
Q 007653 115 SEGRFSNALQKYLLAKKNLQGIHSSE-------GRTLLLACSLNSMSCYLKTKQYDECIKVGSEV--------LAYDA-- 177 (594)
Q Consensus 115 ~~g~y~eAi~~Y~kAL~l~p~~~~~e-------~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~A--------L~ldP-- 177 (594)
+....++|.....+++.+.-.+.... .+........++..+|+++++..-|...+... +..-|
T Consensus 138 ~~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~ 217 (455)
T 3t5v_B 138 SHQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLD 217 (455)
T ss_dssp TTHHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHH
T ss_pred chhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCcc
Confidence 45567788888888888755443211 11112223456778899999888887766432 11112
Q ss_pred cchHHHHHhccchhhhhhHHHHhhhccccccc-CCCC
Q 007653 178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV-SPDD 213 (594)
Q Consensus 178 ~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l-~P~~ 213 (594)
..+.++|.+|..+...++|.+|.++|..|+.. .|..
T Consensus 218 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 218 QQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 34779999999999999999999999999998 7765
No 272
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=22.47 E-value=23 Score=32.98 Aligned_cols=47 Identities=15% Similarity=0.070 Sum_probs=40.1
Q ss_pred eccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccc
Q 007653 157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE 208 (594)
Q Consensus 157 ~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~ 208 (594)
+.+|+++.|.+.+... ++...|.++|.+....|+++-|..+|.++-.
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 4678899998887654 6788999999999999999999999998753
No 273
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=21.17 E-value=52 Score=28.99 Aligned_cols=33 Identities=9% Similarity=0.006 Sum_probs=23.0
Q ss_pred HHHHHHhcccccccccchhHHHHHHHhhhcccc
Q 007653 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG 135 (594)
Q Consensus 103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~ 135 (594)
....-.+.|.......|.+|+..|...+.+.|.
T Consensus 96 LD~AA~~~n~~~a~k~Y~~a~adfdafl~liP~ 128 (130)
T 3zsu_A 96 IDQGADLDSVTVAQEGFREAEADFKAYLNSLPE 128 (130)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhccC
Confidence 344444556666667788888888888888775
No 274
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=20.73 E-value=37 Score=32.05 Aligned_cols=37 Identities=22% Similarity=0.095 Sum_probs=33.1
Q ss_pred cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007653 178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214 (594)
Q Consensus 178 ~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~ 214 (594)
..+.++|.+|..+...++|.+|.++|..|+...|...
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 3577899999999999999999999999999988764
No 275
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=20.62 E-value=49 Score=35.62 Aligned_cols=51 Identities=16% Similarity=0.235 Sum_probs=27.1
Q ss_pred HHHHHHhhhhcccccchHHHHHHHhcccc--cccccc-hhHHHHHHHhhhcccc
Q 007653 85 IATMRARIDAQMNYEFNAAKMLKKQGNEL--YSEGRF-SNALQKYLLAKKNLQG 135 (594)
Q Consensus 85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~--~~~g~y-~eAi~~Y~kAL~l~p~ 135 (594)
+.+........++.....++.++.++... -+.-+| +.|+.+|++||+....
T Consensus 411 ik~i~~s~i~sL~eKi~~AE~~~~k~e~~~n~~a~~yA~kAi~~Y~~Ai~~L~k 464 (526)
T 2wb7_A 411 INATTKAMINSLQEKIDEAEQLLAKAKGMNNENAIEYAQGAIDEYKAAINDLQK 464 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333444444566677777766332 222222 5677788887775443
No 276
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.47 E-value=7.6 Score=41.41 Aligned_cols=106 Identities=11% Similarity=0.062 Sum_probs=75.4
Q ss_pred hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeee-e--cc
Q 007653 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA-Y--DA 177 (594)
Q Consensus 101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~-l--dP 177 (594)
..+.....++..+...|+|.+|...+.....-.-.. .....+..+|+-....|+..++|..|...++++.. . .+
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~---~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~ 211 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS---MEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP 211 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS---SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC
Confidence 356667788999999999999999988764311110 01122344666777888899999999999888632 1 11
Q ss_pred --c--chHHHHHhccchhhhhhHHHHhhhccccccc
Q 007653 178 --K--NVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 209 (594)
Q Consensus 178 --~--~~ka~~~rg~al~~lg~~~eAi~~lekAl~l 209 (594)
. ...++...|..|...++|.+|..+|..++..
T Consensus 212 ~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 212 KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 1 2456667788888999999999999988754
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.32 E-value=31 Score=36.33 Aligned_cols=79 Identities=9% Similarity=-0.031 Sum_probs=59.8
Q ss_pred eeecccCceeeeccccchhhhhhcceeeeecc---cchHHHHHhccchhhhhhHHHHhhhcccccccCC--CCChHHHHH
Q 007653 146 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDA---KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP--DDGTIADVL 220 (594)
Q Consensus 146 ~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP---~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P--~~~~a~~~l 220 (594)
..++..+|..|++.|+|.+|++.|.++..... .-...++..-.++...++|..+..+++++..+-. .+...+..+
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 34778899999999999999999999875432 3467788888888999999999999999866532 344444444
Q ss_pred hHHH
Q 007653 221 RDAK 224 (594)
Q Consensus 221 ~~a~ 224 (594)
..+.
T Consensus 211 k~~~ 214 (429)
T 4b4t_R 211 KTYY 214 (429)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 278
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=20.21 E-value=2.9e+02 Score=25.92 Aligned_cols=14 Identities=14% Similarity=-0.050 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhhcC
Q 007653 8 PEMIRLAQEQMNRM 21 (594)
Q Consensus 8 P~~~r~A~e~m~~m 21 (594)
|.+++.|...+.++
T Consensus 105 ~~vr~~a~~aL~~l 118 (280)
T 1oyz_A 105 ACVRATAIESTAQR 118 (280)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
Done!