Query 007654
Match_columns 594
No_of_seqs 153 out of 734
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 07:11:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007654.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007654hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 99.9 1.1E-21 3.8E-26 208.7 23.6 368 13-517 22-409 (438)
2 1pw4_A Glycerol-3-phosphate tr 99.9 7.3E-22 2.5E-26 210.6 22.1 406 11-579 22-439 (451)
3 2gfp_A EMRD, multidrug resista 99.7 4.4E-17 1.5E-21 170.3 11.7 329 32-517 16-354 (375)
4 4aps_A DI-OR tripeptide H+ sym 99.7 1.4E-15 4.7E-20 164.7 21.8 420 37-580 35-478 (491)
5 2cfq_A Lactose permease; trans 99.7 2.6E-16 8.9E-21 168.3 11.4 179 354-574 213-400 (417)
6 4gc0_A D-xylose-proton symport 99.5 3E-12 1E-16 138.2 26.0 129 33-161 26-178 (491)
7 2xut_A Proton/peptide symporte 99.5 1E-12 3.6E-17 143.4 20.0 141 13-161 12-164 (524)
8 4aps_A DI-OR tripeptide H+ sym 99.0 5.8E-09 2E-13 112.5 15.1 175 361-576 13-199 (491)
9 1pw4_A Glycerol-3-phosphate tr 98.8 2.3E-08 8E-13 105.9 12.6 175 359-574 26-207 (451)
10 2gfp_A EMRD, multidrug resista 98.8 9E-09 3.1E-13 107.0 8.7 165 365-570 4-171 (375)
11 3o7q_A L-fucose-proton symport 98.7 5.7E-08 2E-12 102.6 12.7 124 384-514 49-178 (438)
12 2xut_A Proton/peptide symporte 98.6 1.2E-07 4.1E-12 103.1 11.8 172 360-572 11-197 (524)
13 2cfq_A Lactose permease; trans 98.1 1.1E-06 3.9E-11 93.3 3.2 153 357-514 3-163 (417)
14 4gc0_A D-xylose-proton symport 97.9 5.1E-05 1.7E-09 81.3 12.1 109 399-514 60-187 (491)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.88 E-value=1.1e-21 Score=208.71 Aligned_cols=368 Identities=12% Similarity=0.098 Sum_probs=242.9
Q ss_pred chhHHHHHHHHHHHHhcCcc-cccccccHHHHhhhCCChhhHHHHHHHHhhhhh-cccchhhhhchhhhHHHHHHHHHHH
Q 007654 13 NNRWLVFVAAMWIQSCAGIG-YLFGSISPVIKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQN 90 (594)
Q Consensus 13 ~~Rw~~l~a~~~i~l~~Gt~-Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~~G~~-~gi~~G~l~D~~gp~~~l~iG~~~~ 90 (594)
+++|..++.........|.. +.++.+-|.+++++|+|.+|+.++.....++.. ..++.|.+.||+|+|.++.+|.+..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 44555555555555555443 688888999999999999999998777777764 5889999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHhhccccchhhhhHHHHHHHhcC-CCCCceehhhHhhhhhhHHHHHHHHHHhc
Q 007654 91 FIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIH 169 (594)
Q Consensus 91 ~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~G~~~~~taal~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f 169 (594)
.++..+.+... .. +++|.+.+.-++.|.|.+..+++......+++| ++||.+.|+.-...++|..+-..+...+.
T Consensus 102 ~~~~~~~~~~~--~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 102 ALGAALFWPAA--EI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHH--HT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHhcc--cc--ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888765432 12 257877777788888999999999999999998 56899999999999999877765554332
Q ss_pred -CCCh------------HHHHHHHHHHHHHHHHhhheeecccCCCCcCCCCCCCchhHHHHHHHHHHHHHHHHHHhhhcc
Q 007654 170 -APDH------------ANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLV 236 (594)
Q Consensus 170 -~~~~------------~~fll~la~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~ 236 (594)
+... +.+--.- . .+.......+.+. +
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~---~----------------------~~~~~w~~~~~~~--------~-------- 216 (438)
T 3o7q_A 178 LSNVPHQSQDVLDKMSPEQLSAYK---H----------------------SLVLSVQTPYMII--------V-------- 216 (438)
T ss_dssp HTSSCCCCHHHHHHSCHHHHHHHH---H----------------------HHHHHHHHHHHHH--------H--------
T ss_pred hcccccccccccccCCcchhhhhh---h----------------------hhhhhHHHHHHHH--------H--------
Confidence 1100 0000000 0 0000011111000 0
Q ss_pred ccchhHHHHHHHHHHHHhhhcchhhhhhcccccCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchh
Q 007654 237 DLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPAS 316 (594)
Q Consensus 237 ~~s~~~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (594)
....+..++.. +.. .++. +++.+ ++++.
T Consensus 217 --------~~~~~~~~~~~----------~~~-~p~~-----------~~~~~-------------~~~~~--------- 244 (438)
T 3o7q_A 217 --------AIVLLVALLIM----------LTK-FPAL-----------QSDNH-------------SDAKQ--------- 244 (438)
T ss_dssp --------HHHHHHHHHHH----------HCC-CCCC-----------TTTCC-------------CCSST---------
T ss_pred --------HHHHHHHHHHH----------HHc-CCcc-----------ccccc-------------ccccc---------
Confidence 00000000000 000 0000 00000 00000
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhccCCCCCCCCCCHHHHhhcHHHHHHHHHHHhhhcchhheecchHHH-HHHh-CCC
Q 007654 317 ERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQM-SQSL-GYD 394 (594)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~d~t~~e~l~t~~Fwll~~~~~~~~g~Gl~vi~n~~~i-~~~~-g~~ 394 (594)
+ ....++++.+|++++|.+.+..++..+....+.+...+. .++. |.+
T Consensus 245 -----------------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 293 (438)
T 3o7q_A 245 -----------------------------G--SFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMT 293 (438)
T ss_dssp -----------------------------T--SHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred -----------------------------c--chhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcc
Confidence 0 001234678899999999999998888777777888888 7775 887
Q ss_pred cch--hHHHHHHHhhhhhcccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhhhccch
Q 007654 395 NTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAI 472 (594)
Q Consensus 395 ~~~--~~Vsl~si~n~~GRl~~G~lsD~l~r~~~~~r~~~l~~~~~~~~~~~ll~~~~~~~~l~~~~~liG~~~G~~~~l 472 (594)
... ...++..+.+.+||++.|+++||++||+. +....++..++.+++...+.....+...++|++++..+..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 367 (438)
T 3o7q_A 294 AGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV------LAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPT 367 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH------HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 653 37788899999999999999999987532 2333444455544444444334455668889999999999
Q ss_pred hHHHHHHhhccCchhhhhhHHHhhhhHHHHHHHHHHHHHHHHhhh
Q 007654 473 VPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEA 517 (594)
Q Consensus 473 ~p~i~s~~FG~k~~g~nyg~~~~a~~~g~~~~~~~l~G~iyd~~~ 517 (594)
...++.|.++.+ -++.-++...+ .+|.. ++|.+.|.++|+.+
T Consensus 368 ~~~~~~~~~~~~-~~~~~~~~~~~-~~g~~-~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 368 IFSLGIKNLGQD-TKYGSSFIVMT-IIGGG-IVTPVMGFVSDAAG 409 (438)
T ss_dssp HHHHHHSSCGGG-HHHHHHHHHHT-THHHH-HHHHHHHHHHHHHT
T ss_pred HHHHHHhhcccc-ccchhhHHHHH-HHHHH-HHHHHHHHHHHHhc
Confidence 999999999855 66666666644 46766 58999999999886
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.88 E-value=7.3e-22 Score=210.64 Aligned_cols=406 Identities=14% Similarity=0.147 Sum_probs=265.4
Q ss_pred hcchhHHHHHHHHHHHHhcC-cccccccccHHHHhhhCCChhhHHHHHHHHhhhhhc-ccchhhhhchhhhHHHHHHHHH
Q 007654 11 FFNNRWLVFVAAMWIQSCAG-IGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGAL 88 (594)
Q Consensus 11 ~~~~Rw~~l~a~~~i~l~~G-t~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~~G~~~-gi~~G~l~D~~gp~~~l~iG~~ 88 (594)
..+.||..+....+.....+ ..+.++.+-+.+.+++ +|.+|+.++.....++..+ .++.|.+.||+|+|.++.+|.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 100 (451)
T 1pw4_A 22 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence 34556766666666555555 4477888899999999 9999999987777777755 8899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhccccchhhhhHHHHHHHhcC-CCCCceehhhHhhhhhhHHHHHHHHHH
Q 007654 89 QNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTM 167 (594)
Q Consensus 89 ~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~G~~~~~taal~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~~~ 167 (594)
...++..+....... . .++|.+.+.-++.|.|.+..+.+......++|| ++||++.|+.-...++|..+-..+...
T Consensus 101 ~~~~~~~~~~~~~~~-~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 177 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWA-T--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL 177 (451)
T ss_dssp HHHHHHHHHHHCHHH-H--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHhhhhc-c--ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888776541100 1 135566666777788888888999999999998 569999999988888887665544321
Q ss_pred hcCCChHHHHHHHHHHHHHHHHhhheeecccCCCCcCCCCCCCchhHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHH
Q 007654 168 IHAPDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFT 247 (594)
Q Consensus 168 ~f~~~~~~fll~la~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~~~~~ 247 (594)
+. ...+.. +..|.... ...
T Consensus 178 l~--------------------------~~~g~w-------~~~f~~~~----------------------------~~~ 196 (451)
T 1pw4_A 178 GM--------------------------AWFNDW-------HAALYMPA----------------------------FCA 196 (451)
T ss_dssp HH--------------------------HHTCCS-------TTCTHHHH----------------------------HHH
T ss_pred HH--------------------------HHhccH-------HHHHHHHH----------------------------HHH
Confidence 10 000100 00011100 000
Q ss_pred HHHHHHhhhcchhhhhhcccccCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhHHHHHHHHHHH
Q 007654 248 VILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQA 327 (594)
Q Consensus 248 ~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (594)
++..++... +.++++++. +.+ ++++. +++..++. + .
T Consensus 197 ~~~~~~~~~---------~~~~~~~~~-----~~~--~~~~~-------------~~~~~~~~------~-~-------- 232 (451)
T 1pw4_A 197 ILVALFAFA---------MMRDTPQSC-----GLP--PIEEY-------------KNDYPDDY------N-E-------- 232 (451)
T ss_dssp HHHHHHHHH---------HCCCSSTTT-----CCC--SCTTT-------------CCC----------------------
T ss_pred HHHHHHHHh---------hccCCHhhc-----CCC--Chhhh-------------cccccccc------h-h--------
Confidence 111100000 111111100 000 00000 00000000 0 0
Q ss_pred HHHhhhhhhhhhhhccCCCCCCCCCCHHHHhhcHHHHHHHHHHHhhhcchhheecchHHHHHH-hCCCcch--hHHHHHH
Q 007654 328 RLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMIS 404 (594)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~p~~~~d~t~~e~l~t~~Fwll~~~~~~~~g~Gl~vi~n~~~i~~~-~g~~~~~--~~Vsl~s 404 (594)
+ +++ +....+...++.+|++++|.+.+..++......++......+.++ .|.+... ...++.+
T Consensus 233 ---------~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 298 (451)
T 1pw4_A 233 ---------K---AEQ--ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYE 298 (451)
T ss_dssp --------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHH
T ss_pred ---------h---hhc--ccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 0 000 000112235788999999999998888777666666677777776 6777653 4788899
Q ss_pred Hhhhhhcccccchhhhh--hhccCCchhHHHHHHHHHHHHHHHHHhcc---CchhHHHHHHHHHhhhhhccchhHHHHHH
Q 007654 405 IWNFLGRVGGGYFSEII--VRDYAYPRPVAMAVAQFVMAIGHIFLGMG---WPGAMYVGTLLIGLGYGAHWAIVPAAASE 479 (594)
Q Consensus 405 i~n~~GRl~~G~lsD~l--~r~~~~~r~~~l~~~~~~~~~~~ll~~~~---~~~~l~~~~~liG~~~G~~~~l~p~i~s~ 479 (594)
+++.+|++++|+++||+ +||+ ..+....+...++++++... +...+.+...+.|++++..+.....++.|
T Consensus 299 ~~~~~~~~~~g~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 373 (451)
T 1pw4_A 299 YAGIPGTLLCGWMSDKVFRGNRG-----ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALE 373 (451)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCHH-----HHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCch-----hHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 99999999999999998 6532 22222222222444444332 33456677788899999999999999999
Q ss_pred hhccCchhhhhhHHHhhhhH-HHHHHHHHHHHHHHHhhhhcccCcccccccccccccCCCCCCCCCccccCcccHHHHHH
Q 007654 480 LFGLKKFGALYNFLTLANPA-GSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMI 558 (594)
Q Consensus 480 ~FG~k~~g~nyg~~~~a~~~-g~~~~~~~l~G~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i 558 (594)
.+..++.|+.+|+......+ |.. ++|.+.|.++|..+ |+..|.+
T Consensus 374 ~~~~~~~g~~~~~~~~~~~~~g~~-~~~~~~g~l~~~~g----------------------------------~~~~~~~ 418 (451)
T 1pw4_A 374 LAPKKAAGTAAGFTGLFGYLGGSV-AASAIVGYTVDFFG----------------------------------WDGGFMV 418 (451)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSC----------------------------------SHHHHHH
T ss_pred HhchhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcC----------------------------------cHHHHHH
Confidence 99999999999999988888 887 58999999999653 8899999
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 007654 559 MSGLCIVAVILSMILVHRTTN 579 (594)
Q Consensus 559 ~~~~~~~a~~ls~~l~~r~r~ 579 (594)
.+++++++.++.+++.++.++
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~ 439 (451)
T 1pw4_A 419 MIGGSILAVILLIVVMIGEKR 439 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 999999988888776655444
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.69 E-value=4.4e-17 Score=170.28 Aligned_cols=329 Identities=11% Similarity=0.024 Sum_probs=218.9
Q ss_pred ccccccccHHHHhhhCCChhhHHHHHHHHhhhhh-cccchhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCChhH
Q 007654 32 GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPL 110 (594)
Q Consensus 32 ~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~~G~~-~gi~~G~l~D~~gp~~~l~iG~~~~~~Gy~~~~l~~~g~i~~~s~ 110 (594)
.+.++.+-+.+++++|+|.+|...+.....++.. ..++.|.+.||+|+|.++.++.+...++..+.... +++
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~ 88 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------SSL 88 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-------HHH
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------ccH
Confidence 3455566677899999999999998777777764 48899999999999999999999888888766543 257
Q ss_pred HHHHHHHHhhccccchhhhhHHHHHHHhcC-CCCCceehhhHhhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 007654 111 WAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVI 189 (594)
Q Consensus 111 ~~l~~~~~l~g~G~~~~~taal~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~~~v~l 189 (594)
|.+....++.|.+.+..+++......+++| ++|+++.|+.-...+++..+-..+...+.+ ..
T Consensus 89 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~---------------- 151 (375)
T 2gfp_A 89 TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-MW---------------- 151 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC-HH----------------
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-hc----------------
Confidence 777777777888888888888888999997 679999999988888887665544421110 00
Q ss_pred hhheeecccCCCCcCCCCCCCchhHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHhhhcchhhhhhccccc
Q 007654 190 ALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLE 269 (594)
Q Consensus 190 ~~~~~ir~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~~~~~~i~~~ll~~~~~~~~~~~~~~~ 269 (594)
+....+ ...+++.++.... . +..
T Consensus 152 -----------------------------------------------~~~~~~-~~~~~~~~~~~~~-----~---~~~- 174 (375)
T 2gfp_A 152 -----------------------------------------------NWRACY-LFLLVLCAGVTFS-----M---ARW- 174 (375)
T ss_dssp -----------------------------------------------HHHHHH-HHHHHHHHHHHCC-----C---CCS-
T ss_pred -----------------------------------------------cHHHHH-HHHHHHHHHHHHH-----H---HHH-
Confidence 000000 0011111100000 0 000
Q ss_pred CCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhccCCCCCC
Q 007654 270 RTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRG 349 (594)
Q Consensus 270 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 349 (594)
.+|+++++ ++++ .
T Consensus 175 ---------~~~~~~~~-----------------~~~~-----------------------------------------~ 187 (375)
T 2gfp_A 175 ---------MPETRPVD-----------------APRT-----------------------------------------R 187 (375)
T ss_dssp ---------SCCCSTTT-----------------CCCC-----------------------------------------C
T ss_pred ---------CcccCCCC-----------------cccc-----------------------------------------c
Confidence 00000000 0000 0
Q ss_pred CCCCHHHHhhcHHHHHHHHHHHhhhcchhheecchHHHHHH-hCCCcch--hHHHHHHHhhhhhcccccchhhhhhhccC
Q 007654 350 EDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYA 426 (594)
Q Consensus 350 ~d~t~~e~l~t~~Fwll~~~~~~~~g~Gl~vi~n~~~i~~~-~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~r~~~ 426 (594)
...+.++.+|++++|.+.+..++.......+......+.++ .|.++.. ...++.+++..+|++..|.++||.++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~--- 264 (375)
T 2gfp_A 188 LLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST--- 264 (375)
T ss_dssp TTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH---
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 01123578899999999988887766655555555556555 5665543 36778889999999999999998866
Q ss_pred CchhHHHHHHHHHHHHHHH--HHhc---cCchhHHHHHHHHHhhhhhccchhHHHHHHhhccCchhhhhhHHHhhhhHHH
Q 007654 427 YPRPVAMAVAQFVMAIGHI--FLGM---GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGS 501 (594)
Q Consensus 427 ~~r~~~l~~~~~~~~~~~l--l~~~---~~~~~l~~~~~liG~~~G~~~~l~p~i~s~~FG~k~~g~nyg~~~~a~~~g~ 501 (594)
+... .... ....+.+ .+.. .+...+++...+.|+++|..+......+.|.+. ++.|+.+|+......+|.
T Consensus 265 --~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~ 339 (375)
T 2gfp_A 265 --LMWQ-SVIC-CLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGS 339 (375)
T ss_dssp --HHHH-HHHH-HHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHH
T ss_pred --HHHH-HHHH-HHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHH
Confidence 1111 1111 0111211 1111 123345677888999999999999999999998 899999999999888888
Q ss_pred HHHHHHHHHHHHHhhh
Q 007654 502 LVFSGLIASYIYDHEA 517 (594)
Q Consensus 502 ~~~~~~l~G~iyd~~~ 517 (594)
. ++|.+.|.++|..+
T Consensus 340 ~-~~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 340 G-VLASLSAMLPQTGQ 354 (375)
T ss_dssp H-CCSTTCTHHHHHHH
T ss_pred H-HHHHHHHHHhcCCc
Confidence 8 58899999988654
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.68 E-value=1.4e-15 Score=164.68 Aligned_cols=420 Identities=11% Similarity=0.032 Sum_probs=228.4
Q ss_pred cccHHHHhh-----hCCChhhHHHHHHHHhhhhhc-ccchhhhhch-hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCChh
Q 007654 37 SISPVIKSS-----LNYNQKQIARLGVAKDLGDSV-GFLAGSLCEV-LPIWGALLVGALQNFIGYGWVWLIVTGRAPVLP 109 (594)
Q Consensus 37 ~ys~~Lk~~-----lg~sq~~l~~i~~a~~~G~~~-gi~~G~l~D~-~gp~~~l~iG~~~~~~Gy~~~~l~~~g~i~~~s 109 (594)
...+.++++ +|+|.++..++.....++..+ .++.|.+.|| +|+|.++.+|.++..++..+.. + .+ +
T Consensus 35 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~--~---~~--~ 107 (491)
T 4aps_A 35 ILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLA--L---PF--G 107 (491)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH--S---CC--S
T ss_pred HHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH--H---hh--h
Confidence 344556666 999999999987777777654 7889999999 8999999999998888877543 2 22 4
Q ss_pred HHHHHHHHHhhccccchhhhhHHHHHHHhcC-CC--CCceehhhHhhhhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 007654 110 LWAMCILIFVGNNGETYFNTAALVSCVQNFP-KS--RGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAM 186 (594)
Q Consensus 110 ~~~l~~~~~l~g~G~~~~~taal~t~~k~FP-~~--RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~~~ 186 (594)
+|.+.+.-++.|.|.+..+++......++|| ++ ||.+.++.-....+|..+-..+...+.+.......+.+.....+
T Consensus 108 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~ 187 (491)
T 4aps_A 108 ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMF 187 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5666666677788888888888888899997 45 56677776677777776655555443321222233333333334
Q ss_pred HHHhhheeecccCC-CCcCCCCCCCchhHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHhhhcchhhhhhc
Q 007654 187 VVIALMFIIRPVGG-HRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILS 265 (594)
Q Consensus 187 v~l~~~~~ir~~~~-~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~~~~~~i~~~ll~~~~~~~~~~~ 265 (594)
++++...+.++... ++.++++++..-.-.-. ..+..+.. .+...+.. +.. ..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~g~~-----l~~~~~~~-~~~----~~--- 240 (491)
T 4aps_A 188 IGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKP--------------LLVKVSLA-----VAGFIAII-VVM----NL--- 240 (491)
T ss_dssp HHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHH--------------HHHHCCCC-----CHHHHHHH-HHH----HH---
T ss_pred HHHHHHHHhCcccccccccCCCCccccchhHH--------------HHHHHHHH-----HHHHHHHH-HHH----Hh---
Confidence 44444333332211 11111111110000000 00000000 00000000 000 00
Q ss_pred ccccCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhccCC
Q 007654 266 FFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRG 345 (594)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (594)
.+..+. ++.... ...... ... ... ..+..++
T Consensus 241 --~~~~~~-------------------~~~~~~-----------------~~~~~~-~~~------~~~--~~~~~~~-- 271 (491)
T 4aps_A 241 --VGWNSL-------------------PAYINL-----------------LTIVAI-AIP------VFY--FAWMISS-- 271 (491)
T ss_dssp --HSSCCT-------------------THHHHH-----------------HHHHHH-HHH------HHH--HHHHC----
T ss_pred --ccCccc-------------------ccchhh-----------------hhHHHH-HHH------HHH--HHHHhhc--
Confidence 000000 000000 000000 000 000 0000000
Q ss_pred CCCCCCCCHHHHhhcHHHHHHHHHHHhhhcchhheecchHHHHHH-hCCC--cchhHHHHHHHhhhhhcccccchhhhhh
Q 007654 346 PHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYD--NTHIFVSMISIWNFLGRVGGGYFSEIIV 422 (594)
Q Consensus 346 p~~~~d~t~~e~l~t~~Fwll~~~~~~~~g~Gl~vi~n~~~i~~~-~g~~--~~~~~Vsl~si~n~~GRl~~G~lsD~l~ 422 (594)
+ ..+..+..+...+|.+++..++....-....+......++ .+.+ ......++.++...++.++.|+++||++
T Consensus 272 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~ 347 (491)
T 4aps_A 272 V----KVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWK 347 (491)
T ss_dssp --------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred c----cccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHh
Confidence 0 0001111233445555544444433333334444445554 3444 2344677888889999999999999999
Q ss_pred hccCCchhHHHHHHHHHHHHHHHHHhc----------cCchhHHHHHHHHHhhhhhccchhHHHHHHhhccCchhhhhhH
Q 007654 423 RDYAYPRPVAMAVAQFVMAIGHIFLGM----------GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNF 492 (594)
Q Consensus 423 r~~~~~r~~~l~~~~~~~~~~~ll~~~----------~~~~~l~~~~~liG~~~G~~~~l~p~i~s~~FG~k~~g~nyg~ 492 (594)
||+... ...+.....+..++++++.. .+...+.+..++.|++.+........++.|.+..++-|+..|+
T Consensus 348 ~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~ 426 (491)
T 4aps_A 348 KNQPSS-PTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSM 426 (491)
T ss_dssp TC---C-HHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHH
T ss_pred ccCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHH
Confidence 876432 23333444444555433221 1334567788889999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHhhhhcccCcccccccccccccCCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHH
Q 007654 493 LTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 572 (594)
Q Consensus 493 ~~~a~~~g~~~~~~~l~G~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~a~~ls~~ 572 (594)
..+...+|.. ++|.+.|.+.|. -|...|.+.+++++++.++.++
T Consensus 427 ~~~~~~~g~~-i~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 427 WFLSSSVGSA-LNAQLVTLYNAK-----------------------------------SEVAYFSYFGLGSVVLGIVLVF 470 (491)
T ss_dssp HHHHHHHHHH-HHHHHGGGGGGS-----------------------------------STTHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHhcc-----------------------------------cHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888887 488777766542 2667888888888888777777
Q ss_pred HHhhhhhh
Q 007654 573 LVHRTTNV 580 (594)
Q Consensus 573 l~~r~r~~ 580 (594)
+.++.|+.
T Consensus 471 ~~~~~~~~ 478 (491)
T 4aps_A 471 LSKRIQGL 478 (491)
T ss_dssp C-------
T ss_pred HHHHHHHH
Confidence 66555543
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.65 E-value=2.6e-16 Score=168.33 Aligned_cols=179 Identities=11% Similarity=0.090 Sum_probs=120.5
Q ss_pred HHHHhhcHHHHHHHHHHHhhhcchhheec-chHHHHHHh-CCC---cc--hhHHHHHHHhhhhhcccccchhhhhhhccC
Q 007654 354 LTQALIKADFWLIFFSLLLGSGSGLTVID-NLGQMSQSL-GYD---NT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYA 426 (594)
Q Consensus 354 ~~e~l~t~~Fwll~~~~~~~~g~Gl~vi~-n~~~i~~~~-g~~---~~--~~~Vsl~si~n~~GRl~~G~lsD~l~r~~~ 426 (594)
.++.+|++++|.+++..++.. ....... ......++. +.. .. ....++..+++.+|++..|+++||++||+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~ 291 (417)
T 2cfq_A 213 ALELFRQPKLWFLSLYVIGVS-CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA 291 (417)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHhcCCchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH
Confidence 457889999998776544332 2222222 222233332 211 11 124567778899999999999999988542
Q ss_pred CchhHHHHHHHHHHHHHHHHHhcc-CchhHHHHHHHHHhhhhhccchhHHHHHHhhccCchhhhhhHH-HhhhhHHHHHH
Q 007654 427 YPRPVAMAVAQFVMAIGHIFLGMG-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL-TLANPAGSLVF 504 (594)
Q Consensus 427 ~~r~~~l~~~~~~~~~~~ll~~~~-~~~~l~~~~~liG~~~G~~~~l~p~i~s~~FG~k~~g~nyg~~-~~a~~~g~~~~ 504 (594)
+.....+..++.+++... +...+.+...+.+++++........+++|.+..+.-|+.+|+. ..+..+|+. +
T Consensus 292 ------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~-~ 364 (417)
T 2cfq_A 292 ------LLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI-F 364 (417)
T ss_dssp ------HHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHH-H
T ss_pred ------HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHH-H
Confidence 223334444444444332 3334555666678888777777788999999999999999995 667778887 5
Q ss_pred HHHHHHHHHHhhhhcccCcccccccccccccCCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHH
Q 007654 505 SGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 574 (594)
Q Consensus 505 ~~~l~G~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~a~~ls~~l~ 574 (594)
+|.+.|.++|..+ |+..|.+.+++++++.++.+++.
T Consensus 365 gp~l~G~l~~~~g----------------------------------~~~~f~~~~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 365 MSVLAGNMYESIG----------------------------------FQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HTHHHHTHHHHSH----------------------------------HHHHHHHHHHHHHHHHHHHTTSS
T ss_pred hhhhHHHHHHhcC----------------------------------cHHHHHHHHHHHHHHHHHHHhhh
Confidence 8999999999654 78889999988888877765543
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.50 E-value=3e-12 Score=138.21 Aligned_cols=129 Identities=16% Similarity=0.070 Sum_probs=88.8
Q ss_pred ccccccc---HHHHhhhCCC----h----hhHHHHHHHHhhhhhc-ccchhhhhchhhhHHHHHHHHHHHHHHHHHHHHH
Q 007654 33 YLFGSIS---PVIKSSLNYN----Q----KQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLI 100 (594)
Q Consensus 33 Y~fS~ys---~~Lk~~lg~s----q----~~l~~i~~a~~~G~~~-gi~~G~l~D~~gp~~~l~iG~~~~~~Gy~~~~l~ 100 (594)
|..++++ +.+++.++.+ . ++..++..+..+|..+ +++.|.+.||+|+|.++.++.++..+|-.+....
T Consensus 26 yd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~ 105 (491)
T 4gc0_A 26 YDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWP 105 (491)
T ss_dssp HHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3334554 4556665432 2 3344555666777766 5789999999999999999999887776654321
Q ss_pred HhcCC-----------CChhHHHHHHHHHhhccccchhhhhHHHHHHHhcC-CCCCceehhhHhhhhhhHHHH
Q 007654 101 VTGRA-----------PVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAIL 161 (594)
Q Consensus 101 ~~g~i-----------~~~s~~~l~~~~~l~g~G~~~~~taal~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~ 161 (594)
..+.. -+.+++++.+.=++.|.|.+..++.+......+.| ++||...++...+..++..+-
T Consensus 106 ~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~ 178 (491)
T 4gc0_A 106 ELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLV 178 (491)
T ss_dssp TTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhh
Confidence 11110 02367888888888889999888888888889998 569998888776666665443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.48 E-value=1e-12 Score=143.41 Aligned_cols=141 Identities=9% Similarity=0.020 Sum_probs=97.7
Q ss_pred chhHHHHHHHHHHHHhcCcccccccccHHHHhhhC------CChhhHHHHHHHHhhhhhc-ccchhhhhchh-hhHHHHH
Q 007654 13 NNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLN------YNQKQIARLGVAKDLGDSV-GFLAGSLCEVL-PIWGALL 84 (594)
Q Consensus 13 ~~Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~Lk~~lg------~sq~~l~~i~~a~~~G~~~-gi~~G~l~D~~-gp~~~l~ 84 (594)
++-|..++...+...+.... .+.....+++++| +|..+..++.....++..+ .+++|.+.||+ |+|.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~--~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGM--RNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL 89 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHH--HHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 34355555444444433222 2334455788899 9999999986666666654 77899999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhccccchhhhhHHHHHHHhcCC-CCCceehh---hHhhhhhhHHH
Q 007654 85 VGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGI---LKGFAGLGGAI 160 (594)
Q Consensus 85 iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~G~~~~~taal~t~~k~FP~-~RG~~~Gl---~~a~~GLSa~i 160 (594)
++.+...+++.++.++ . .++|.+.+..++.|.|.+..+++......++||+ +||++.++ ......+|+.+
T Consensus 90 ~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~ 163 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIF--E----HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFF 163 (524)
T ss_dssp HHHHHHHHHHHHHHHT--S----SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--c----ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999888887765432 1 1456666666677788888888888888999985 58877666 55555555544
Q ss_pred H
Q 007654 161 L 161 (594)
Q Consensus 161 ~ 161 (594)
-
T Consensus 164 g 164 (524)
T 2xut_A 164 A 164 (524)
T ss_dssp H
T ss_pred H
Confidence 3
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.96 E-value=5.8e-09 Score=112.53 Aligned_cols=175 Identities=14% Similarity=0.155 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHhhhcchhheecchHHHHHH------hCCCcch--hHHHHHHHhhhhhcccccchhhh-hhhccCCchhH
Q 007654 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQS------LGYDNTH--IFVSMISIWNFLGRVGGGYFSEI-IVRDYAYPRPV 431 (594)
Q Consensus 361 ~~Fwll~~~~~~~~g~Gl~vi~n~~~i~~~------~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~-l~r~~~~~r~~ 431 (594)
+.+|.+++..++....-..+...+.+..++ +|.+..+ ...++..+.+.++++.+|+++|| ++||+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~----- 87 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPA----- 87 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHH-----
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHH-----
Confidence 567888877776665555555666666654 6877654 37899999999999999999999 888543
Q ss_pred HHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHhhhhhccchhHHHHHHhhccCc--hhhhhhHHHhhhhHHHHHHHHHH
Q 007654 432 AMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKK--FGALYNFLTLANPAGSLVFSGLI 508 (594)
Q Consensus 432 ~l~~~~~~~~~~~ll~~~-~~~~~l~~~~~liG~~~G~~~~l~p~i~s~~FG~k~--~g~nyg~~~~a~~~g~~~~~~~l 508 (594)
+....++..++.++... .+...++++-++.|++.|......+.+++|.|..++ -+..+++...+..+|.. ++|.+
T Consensus 88 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~ 165 (491)
T 4aps_A 88 -VFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAF-IAPLI 165 (491)
T ss_dssp -HHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred -HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHH-HHHHH
Confidence 24445555556555444 345578888999999999999999999999999888 77788888888889887 59999
Q ss_pred HHHHHHhhhhcccCcccccccccccccCCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhh
Q 007654 509 ASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHR 576 (594)
Q Consensus 509 ~G~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~a~~ls~~l~~r 576 (594)
.|.+.|..+ ++..|.+.+..+++++++..+...+
T Consensus 166 ~~~l~~~~g----------------------------------~~~~f~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 166 VGAAQEAAG----------------------------------YHVAFSLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp HHHHHHHSC----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhh----------------------------------HHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 999988653 8999999888887777776655443
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.80 E-value=2.3e-08 Score=105.89 Aligned_cols=175 Identities=14% Similarity=0.094 Sum_probs=127.2
Q ss_pred hcHHHHHHHHHHHhhhcchhheecchHHHHHHhCCCcch--hHHHHHHHhhhhhcccccchhhhhhhccCCchhHHHHHH
Q 007654 359 IKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVA 436 (594)
Q Consensus 359 ~t~~Fwll~~~~~~~~g~Gl~vi~n~~~i~~~~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~r~~~~~r~~~l~~~ 436 (594)
+.+.++.+++..++....-.++..-+..+.+++ .+..+ ...++..+...++.+.+|+++||++||+ .+.+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~------~l~~~ 98 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV------FLPAG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchH------HHHHH
Confidence 344555555555444333223333445555667 66543 4789999999999999999999999854 23444
Q ss_pred HHHHHHHHHHHhc-----cCchhHHHHHHHHHhhhhhccchhHHHHHHhhccCchhhhhhHHHhhhhHHHHHHHHHHHHH
Q 007654 437 QFVMAIGHIFLGM-----GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASY 511 (594)
Q Consensus 437 ~~~~~~~~ll~~~-----~~~~~l~~~~~liG~~~G~~~~l~p~i~s~~FG~k~~g~nyg~~~~a~~~g~~~~~~~l~G~ 511 (594)
.++.+++.++... .+...+++.-++.|++.|..+....++++|+|..|+-++..|+...+..+|.. ++|.+.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~ 177 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG-IPPLLFLL 177 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHT-SHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 5555555544433 34557888899999999999999999999999999999999999999999987 58999999
Q ss_pred HHHhhhhcccCcccccccccccccCCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHH
Q 007654 512 IYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 574 (594)
Q Consensus 512 iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~a~~ls~~l~ 574 (594)
+.+..+ .++.+|.+.+.++++..++..+..
T Consensus 178 l~~~~g---------------------------------~w~~~f~~~~~~~~~~~~~~~~~~ 207 (451)
T 1pw4_A 178 GMAWFN---------------------------------DWHAALYMPAFCAILVALFAFAMM 207 (451)
T ss_dssp HHHHTC---------------------------------CSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhc---------------------------------cHHHHHHHHHHHHHHHHHHHHhhc
Confidence 886543 277788888887777666655443
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.78 E-value=9e-09 Score=106.98 Aligned_cols=165 Identities=11% Similarity=0.147 Sum_probs=123.0
Q ss_pred HHHHHHHhhhcchhheecchHHHHHHhCCCcchh--HHHHHHHhhhhhcccccchhhhhhhccCCchhHHHHHHHHHHHH
Q 007654 365 LIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAI 442 (594)
Q Consensus 365 ll~~~~~~~~g~Gl~vi~n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~l~r~~~~~r~~~l~~~~~~~~~ 442 (594)
++++..++....-.++.....++.+++|.+..+. ..++..+.+.++.+.+|+++||++||+.. .....+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~ 77 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI------LVGMSIFML 77 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH------HHHHHHHHH
Confidence 3444444443333334445566777788887643 78999999999999999999999997765 233333444
Q ss_pred HHHHHhc-cCchhHHHHHHHHHhhhhhccchhHHHHHHhhccCchhhhhhHHHhhhhHHHHHHHHHHHHHHHHhhhhccc
Q 007654 443 GHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQH 521 (594)
Q Consensus 443 ~~ll~~~-~~~~~l~~~~~liG~~~G~~~~l~p~i~s~~FG~k~~g~nyg~~~~a~~~g~~~~~~~l~G~iyd~~~~~~~ 521 (594)
+.++... .+...+++..++.|++.|........+++|.+..|+.++..++...+..+|.. ++|.+.+.+.|..+
T Consensus 78 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~---- 152 (375)
T 2gfp_A 78 ATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPL-LAPLIGGLLDTMWN---- 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHH-HHHHHHHHSSCHHH----
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhcc----
Confidence 4433332 33456777889999999999999999999999999999999999999999987 58999998887654
Q ss_pred CcccccccccccccCCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHH
Q 007654 522 QPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILS 570 (594)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~a~~ls 570 (594)
++..|.+.+..+++..++.
T Consensus 153 ------------------------------~~~~~~~~~~~~~~~~~~~ 171 (375)
T 2gfp_A 153 ------------------------------WRACYLFLLVLCAGVTFSM 171 (375)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHCCC
T ss_pred ------------------------------HHHHHHHHHHHHHHHHHHH
Confidence 8888988877776655533
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.72 E-value=5.7e-08 Score=102.61 Aligned_cols=124 Identities=15% Similarity=0.130 Sum_probs=100.0
Q ss_pred hHHHHHHhCCCcchh--HHHHHHHhhhhhcccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHH---hc-cCchhHHH
Q 007654 384 LGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFL---GM-GWPGAMYV 457 (594)
Q Consensus 384 ~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~l~r~~~~~r~~~l~~~~~~~~~~~ll~---~~-~~~~~l~~ 457 (594)
..++.+++|.+..+. ..++..+...++.+.+|.++||++||+. +.+..++.+++.++. .. .+...+++
T Consensus 49 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~------l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (438)
T 3o7q_A 49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG------IITGLFLYALGAALFWPAAEIMNYTLFLV 122 (438)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHH------HHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHH------HHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 444556788887643 7899999999999999999999998553 244445555555444 33 34556888
Q ss_pred HHHHHHhhhhhccchhHHHHHHhhccCchhhhhhHHHhhhhHHHHHHHHHHHHHHHH
Q 007654 458 GTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYD 514 (594)
Q Consensus 458 ~~~liG~~~G~~~~l~p~i~s~~FG~k~~g~nyg~~~~a~~~g~~~~~~~l~G~iyd 514 (594)
.-++.|++.|..+.....+++|.+..|+-++..|+...+..+|.. ++|.+.+.+.+
T Consensus 123 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~~ 178 (438)
T 3o7q_A 123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAI-IAVVFGQSLIL 178 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHH-HHHHHTTHHHH
T ss_pred HHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 889999999999999999999999999999999999999999988 58999998883
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.62 E-value=1.2e-07 Score=103.14 Aligned_cols=172 Identities=17% Similarity=0.177 Sum_probs=126.2
Q ss_pred cHHHHHHHHHHHhhhcchhheecchHHHHH-HhC------CCcch--hHHHHHHHhhhhhcccccchhhhh-hhccCCch
Q 007654 360 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLG------YDNTH--IFVSMISIWNFLGRVGGGYFSEII-VRDYAYPR 429 (594)
Q Consensus 360 t~~Fwll~~~~~~~~g~Gl~vi~n~~~i~~-~~g------~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l-~r~~~~~r 429 (594)
++.+|++++..++....-.++...+....+ ++| .+..+ ...++..+...++.+.+|+++||+ +||+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~--- 87 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT--- 87 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH---
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH---
Confidence 356788777777665555555555555444 577 77654 378899999999999999999999 88543
Q ss_pred hHHHHHHHHHHHHHHHHHhc-c-CchhHHHHHHHHHhhhhhccchhHHHHHHhhccCchh---hhhhHHHhhhhHHHHHH
Q 007654 430 PVAMAVAQFVMAIGHIFLGM-G-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFG---ALYNFLTLANPAGSLVF 504 (594)
Q Consensus 430 ~~~l~~~~~~~~~~~ll~~~-~-~~~~l~~~~~liG~~~G~~~~l~p~i~s~~FG~k~~g---~nyg~~~~a~~~g~~~~ 504 (594)
+.+..++..++.++... . +...+++..++.|++.|......+++++|.|..++-+ ..+|+...+..+|.. +
T Consensus 88 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~-~ 163 (524)
T 2xut_A 88 ---ILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSF-F 163 (524)
T ss_dssp ---HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHH-H
T ss_pred ---HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHH-H
Confidence 23344455555544433 3 4556778889999999999999999999999988875 456668888888887 5
Q ss_pred HHHHHHHHHHhhhhcccCcccccccccccccCCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHH
Q 007654 505 SGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 572 (594)
Q Consensus 505 ~~~l~G~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~a~~ls~~ 572 (594)
+|.+.|.+.|.. .++..|.+.+.++++++++..+
T Consensus 164 g~~~~~~l~~~~----------------------------------g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 164 ASLSMPLLLKNF----------------------------------GAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHTSTHHHHTS----------------------------------CHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhccc----------------------------------cHHHHHHHHHHHHHHHHHHHHH
Confidence 898999888754 3899999988887776665543
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.09 E-value=1.1e-06 Score=93.31 Aligned_cols=153 Identities=12% Similarity=0.114 Sum_probs=90.2
Q ss_pred HhhcHHHHHHHHHHHhhhcchhheecchHHHHHH-hCCCcch--hHHHHHHHhhhhhcccccchhhhhhhccCCchhHHH
Q 007654 357 ALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 433 (594)
Q Consensus 357 ~l~t~~Fwll~~~~~~~~g~Gl~vi~n~~~i~~~-~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~r~~~~~r~~~l 433 (594)
.+|+++||.+....++....-.++..-+....++ +|.++.+ ..+++..+...++++.+|+++||++||+.. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l----~~ 78 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL----LW 78 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHH----HH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH----HH
Confidence 5799999999887766554444445556665554 7887654 488999999999999999999999996542 11
Q ss_pred HHH-HHHHHHHHHHHhccC--chhHHHHHHHHHhhhhhccchhHHHHHHhhc--cCchhhhhhHHHhhhhHHHHHHHHHH
Q 007654 434 AVA-QFVMAIGHIFLGMGW--PGAMYVGTLLIGLGYGAHWAIVPAAASELFG--LKKFGALYNFLTLANPAGSLVFSGLI 508 (594)
Q Consensus 434 ~~~-~~~~~~~~ll~~~~~--~~~l~~~~~liG~~~G~~~~l~p~i~s~~FG--~k~~g~nyg~~~~a~~~g~~~~~~~l 508 (594)
... ..+.....+...... ...+.....+.|+..|..++.....+.++.- .|+.+..+|.......+|.. ++|.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~-~~~~l 157 (417)
T 2cfq_A 79 IITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWA-LGASI 157 (417)
T ss_dssp HHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHH-HHHHH
Confidence 111 100000111100000 0011223333344444333333333333332 25667778888777778776 58999
Q ss_pred HHHHHH
Q 007654 509 ASYIYD 514 (594)
Q Consensus 509 ~G~iyd 514 (594)
.|.+.|
T Consensus 158 ~~~l~~ 163 (417)
T 2cfq_A 158 VGIMFT 163 (417)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998886
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.91 E-value=5.1e-05 Score=81.32 Aligned_cols=109 Identities=22% Similarity=0.250 Sum_probs=82.8
Q ss_pred HHHHHHHhhhhhcccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHh-------------------ccCchhHHHHH
Q 007654 399 FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-------------------MGWPGAMYVGT 459 (594)
Q Consensus 399 ~Vsl~si~n~~GRl~~G~lsD~l~r~~~~~r~~~l~~~~~~~~~~~ll~~-------------------~~~~~~l~~~~ 459 (594)
.+|.+.++..+|-+++|+++||+|||+.. .+..++..++.++.+ ..+...++++=
T Consensus 60 ~~s~~~~G~~iG~~~~G~laDr~GRk~~l------~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R 133 (491)
T 4gc0_A 60 CVASALIGCIIGGALGGYCSNRFGRRDSL------KIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYR 133 (491)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHTCHHHHH------HHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHH------HHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHH
Confidence 67888899999999999999999996542 344444444443322 22344688889
Q ss_pred HHHHhhhhhccchhHHHHHHhhccCchhhhhhHHHhhhhHHHHHHHHHHHHHHHH
Q 007654 460 LLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYD 514 (594)
Q Consensus 460 ~liG~~~G~~~~l~p~i~s~~FG~k~~g~nyg~~~~a~~~g~~~~~~~l~G~iyd 514 (594)
++.|++.|+...+.|.+++|....++-|..-++...+..+|.. +++.+.....+
T Consensus 134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~-~~~~~~~~~~~ 187 (491)
T 4gc0_A 134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQL-LVYCVNYFIAR 187 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhh-hhhhcchhhcc
Confidence 9999999999999999999999999999998888888888776 35544443333
Done!