Query 007655
Match_columns 594
No_of_seqs 301 out of 1526
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 13:33:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007655.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007655hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0797 Actin-related protein 100.0 2.7E-90 5.9E-95 713.9 24.8 536 1-578 16-615 (618)
2 PTZ00452 actin; Provisional 100.0 1.2E-69 2.7E-74 578.3 32.7 323 172-578 50-375 (375)
3 PTZ00466 actin-like protein; P 100.0 5.4E-69 1.2E-73 573.9 33.6 321 172-578 57-380 (380)
4 PTZ00281 actin; Provisional 100.0 9.1E-68 2E-72 565.0 32.6 323 172-578 51-376 (376)
5 KOG0676 Actin and related prot 100.0 7.3E-68 1.6E-72 549.1 26.4 318 172-578 52-372 (372)
6 PTZ00004 actin-2; Provisional 100.0 4.7E-66 1E-70 552.3 33.3 323 172-578 51-378 (378)
7 KOG0679 Actin-related protein 100.0 1.1E-66 2.3E-71 525.2 26.0 339 172-577 55-425 (426)
8 PTZ00280 Actin-related protein 100.0 6.3E-64 1.4E-68 542.3 34.0 330 172-577 52-409 (414)
9 PF00022 Actin: Actin; InterP 100.0 7.4E-64 1.6E-68 538.8 23.8 330 173-578 45-393 (393)
10 KOG0677 Actin-related protein 100.0 1.5E-62 3.2E-67 471.3 19.3 316 172-575 51-385 (389)
11 smart00268 ACTIN Actin. ACTIN 100.0 2.1E-60 4.7E-65 508.7 32.8 324 172-578 45-373 (373)
12 cd00012 ACTIN Actin; An ubiqui 100.0 3.6E-59 7.8E-64 498.9 31.9 325 172-576 44-371 (371)
13 COG5277 Actin and related prot 100.0 1.3E-58 2.8E-63 496.7 26.3 359 172-578 52-444 (444)
14 KOG0680 Actin-related protein 100.0 5.2E-54 1.1E-58 423.6 25.3 333 174-578 42-399 (400)
15 KOG0678 Actin-related protein 100.0 3.5E-43 7.7E-48 347.3 11.9 328 172-574 57-406 (415)
16 KOG0681 Actin-related protein 100.0 3.5E-38 7.5E-43 329.4 20.1 352 188-580 79-642 (645)
17 PRK13927 rod shape-determining 100.0 2.9E-29 6.4E-34 264.5 20.8 270 173-551 43-323 (334)
18 PRK13930 rod shape-determining 100.0 3.2E-29 6.9E-34 264.3 21.0 272 173-551 46-327 (335)
19 TIGR00904 mreB cell shape dete 99.9 2.1E-26 4.6E-31 242.7 18.2 271 172-550 43-325 (333)
20 PRK13929 rod-share determining 99.9 3.8E-24 8.3E-29 225.6 17.9 263 174-549 43-323 (335)
21 PRK13928 rod shape-determining 99.9 3.6E-23 7.8E-28 218.4 14.3 269 174-550 42-321 (336)
22 PF06723 MreB_Mbl: MreB/Mbl pr 99.9 1.5E-21 3.3E-26 202.7 17.9 268 174-549 40-318 (326)
23 COG1077 MreB Actin-like ATPase 99.6 1.7E-15 3.8E-20 152.6 13.8 270 172-549 45-328 (342)
24 TIGR02529 EutJ ethanolamine ut 99.4 6.2E-12 1.3E-16 126.4 18.3 134 193-359 29-165 (239)
25 PRK15080 ethanolamine utilizat 99.2 2.7E-10 5.9E-15 116.5 15.9 138 189-359 52-192 (267)
26 PRK09472 ftsA cell division pr 98.8 2.7E-08 5.8E-13 108.4 11.4 94 249-361 165-263 (420)
27 TIGR01174 ftsA cell division p 98.8 3.4E-08 7.4E-13 105.9 11.0 93 252-363 160-257 (371)
28 CHL00094 dnaK heat shock prote 98.8 1.6E-07 3.4E-12 107.3 16.9 91 239-330 138-236 (621)
29 PTZ00400 DnaK-type molecular c 98.8 1.3E-07 2.8E-12 108.6 16.0 91 239-330 177-275 (663)
30 PLN03184 chloroplast Hsp70; Pr 98.7 2.9E-07 6.4E-12 105.8 17.1 91 239-330 175-273 (673)
31 PRK00290 dnaK molecular chaper 98.7 1.7E-07 3.7E-12 107.3 15.0 91 239-330 136-234 (627)
32 TIGR01991 HscA Fe-S protein as 98.7 1.3E-07 2.8E-12 107.5 13.5 110 215-331 114-231 (599)
33 PTZ00186 heat shock 70 kDa pre 98.7 2.9E-07 6.2E-12 105.3 15.2 91 239-330 163-261 (657)
34 TIGR02350 prok_dnaK chaperone 98.6 3.9E-07 8.5E-12 103.7 14.6 108 216-330 116-232 (595)
35 PRK13411 molecular chaperone D 98.6 4E-07 8.6E-12 104.5 14.6 109 215-330 118-235 (653)
36 PTZ00009 heat shock 70 kDa pro 98.6 8.5E-07 1.8E-11 101.9 15.5 91 239-330 143-243 (653)
37 PRK13410 molecular chaperone D 98.6 8.2E-07 1.8E-11 101.9 14.7 109 215-330 120-236 (668)
38 PRK01433 hscA chaperone protei 98.5 2.8E-07 6E-12 104.4 10.6 114 239-360 144-265 (595)
39 PRK05183 hscA chaperone protei 98.5 2.1E-07 4.6E-12 106.0 9.2 92 239-331 152-251 (616)
40 COG0849 ftsA Cell division ATP 98.3 2.4E-06 5.1E-11 91.9 10.6 90 254-361 168-262 (418)
41 PF00012 HSP70: Hsp70 protein; 98.3 3.8E-06 8.1E-11 95.8 10.6 92 239-331 138-238 (602)
42 PRK11678 putative chaperone; P 98.2 4.3E-05 9.3E-10 83.9 17.4 86 239-326 152-260 (450)
43 COG0443 DnaK Molecular chapero 98.1 3.2E-05 6.9E-10 87.5 13.1 150 173-329 51-220 (579)
44 TIGR01175 pilM type IV pilus a 98.0 0.00012 2.6E-09 77.7 15.4 91 249-358 142-244 (348)
45 PF11104 PilM_2: Type IV pilus 97.4 0.00059 1.3E-08 72.4 10.0 126 212-358 87-236 (340)
46 PRK13917 plasmid segregation p 97.2 0.0018 3.8E-08 68.9 10.6 69 263-331 151-232 (344)
47 TIGR03739 PRTRC_D PRTRC system 96.9 0.0056 1.2E-07 64.4 10.1 113 213-332 84-215 (320)
48 COG4972 PilM Tfp pilus assembl 96.1 0.32 6.9E-06 50.5 16.7 79 249-329 147-236 (354)
49 COG4820 EutJ Ethanolamine util 95.7 0.0037 8E-08 59.9 0.6 80 260-357 116-195 (277)
50 PRK10719 eutA reactivating fac 95.5 0.021 4.5E-07 62.1 5.7 110 211-324 64-184 (475)
51 KOG0104 Molecular chaperones G 95.5 0.27 5.8E-06 55.8 14.2 92 239-331 161-275 (902)
52 KOG0101 Molecular chaperones H 95.2 0.13 2.9E-06 57.8 11.1 89 239-328 146-244 (620)
53 KOG0100 Molecular chaperones G 93.9 0.25 5.5E-06 52.2 8.7 111 239-358 175-298 (663)
54 PF06406 StbA: StbA protein; 91.7 0.24 5.3E-06 52.0 5.2 70 262-331 137-212 (318)
55 PF06277 EutA: Ethanolamine ut 89.6 1.6 3.4E-05 47.8 9.0 116 191-320 50-177 (473)
56 PF08841 DDR: Diol dehydratase 86.3 3.8 8.2E-05 41.9 8.7 89 252-358 97-191 (332)
57 PF14450 FtsA: Cell division p 86.3 3.3 7.3E-05 36.8 7.7 59 287-363 2-71 (120)
58 PF02541 Ppx-GppA: Ppx/GppA ph 83.6 2.3 5E-05 43.8 6.1 70 254-326 75-152 (285)
59 PF01968 Hydantoinase_A: Hydan 82.0 1.6 3.5E-05 45.3 4.3 32 277-308 69-101 (290)
60 KOG0103 Molecular chaperones H 81.9 11 0.00024 43.0 10.8 116 210-331 116-246 (727)
61 TIGR03123 one_C_unchar_1 proba 80.3 11 0.00024 39.6 9.7 90 213-309 36-153 (318)
62 TIGR03192 benz_CoA_bzdQ benzoy 64.0 2 4.4E-05 44.4 -0.3 67 471-551 221-287 (293)
63 TIGR02259 benz_CoA_red_A benzo 63.3 3.1 6.7E-05 44.7 0.8 53 491-550 380-432 (432)
64 TIGR02261 benz_CoA_red_D benzo 62.4 2.9 6.3E-05 42.6 0.5 50 494-550 213-262 (262)
65 KOG0102 Molecular chaperones m 58.8 82 0.0018 35.3 10.6 91 239-330 163-261 (640)
66 TIGR03286 methan_mark_15 putat 58.6 2.7 5.8E-05 45.4 -0.6 68 470-551 335-402 (404)
67 PF08735 DUF1786: Putative pyr 58.3 26 0.00057 35.5 6.4 46 261-307 138-190 (254)
68 PRK11031 guanosine pentaphosph 58.0 14 0.00031 41.3 5.0 40 285-326 133-172 (496)
69 TIGR03706 exo_poly_only exopol 57.8 10 0.00022 39.4 3.6 40 285-326 126-165 (300)
70 COG1548 Predicted transcriptio 55.3 8.1 0.00018 39.0 2.2 23 284-306 130-152 (330)
71 COG0248 GppA Exopolyphosphatas 46.8 14 0.0003 41.3 2.5 42 283-326 128-169 (492)
72 PRK13317 pantothenate kinase; 41.4 11 0.00023 39.0 0.6 73 470-551 200-273 (277)
73 COG4819 EutA Ethanolamine util 39.3 73 0.0016 33.6 6.2 107 211-321 63-180 (473)
74 PRK10854 exopolyphosphatase; P 38.7 33 0.00071 38.6 4.0 40 284-325 137-176 (513)
75 COG1924 Activator of 2-hydroxy 36.6 11 0.00024 40.1 -0.1 44 496-551 346-389 (396)
76 COG0145 HyuA N-methylhydantoin 32.6 43 0.00092 39.0 3.7 31 278-308 270-302 (674)
77 PF03702 UPF0075: Uncharacteri 31.5 28 0.00061 37.3 1.9 26 493-518 285-310 (364)
78 TIGR00241 CoA_E_activ CoA-subs 29.6 87 0.0019 31.4 5.0 100 211-329 33-137 (248)
79 TIGR00241 CoA_E_activ CoA-subs 27.6 63 0.0014 32.4 3.6 42 495-548 206-247 (248)
80 TIGR03286 methan_mark_15 putat 26.6 1.9E+02 0.0042 31.4 7.1 101 211-327 177-286 (404)
81 cd01732 LSm5 The eukaryotic Sm 23.2 49 0.0011 27.1 1.5 12 16-27 65-76 (76)
82 COG4012 Uncharacterized protei 23.2 1.3E+02 0.0029 30.7 4.7 40 268-307 207-250 (342)
83 PRK03011 butyrate kinase; Prov 21.3 54 0.0012 35.1 1.8 26 284-310 176-201 (358)
84 PF01869 BcrAD_BadFG: BadF/Bad 21.1 2.3E+02 0.005 28.6 6.3 84 211-307 40-129 (271)
85 PRK02308 uvsE putative UV dama 21.0 63 0.0014 33.7 2.2 14 16-29 142-158 (303)
86 PF00871 Acetate_kinase: Aceto 20.9 48 0.001 35.9 1.3 27 284-311 199-225 (388)
No 1
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=100.00 E-value=2.7e-90 Score=713.93 Aligned_cols=536 Identities=39% Similarity=0.653 Sum_probs=398.6
Q ss_pred CCcccccCchhhhhhcCCCEEEEcCCCceeeeecCCCCCCCccceeEEEecCCC-Ccccchhhhccccc----cchhhhh
Q 007655 1 MDYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQV-PKRNVVDQMLNSQV----TTSQHVE 75 (594)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~iVihpGS~~lriG~asd~~P~~ip~~iA~~~~~~-~~~~~~~~~~~~~~----~~~~~~~ 75 (594)
++|.+.+-++|...+++.|+||||+||+|+|||+|+|.+|.++||||||+.++. -++......+.+.. +.....+
T Consensus 16 ~p~~~g~ee~q~~e~ed~k~ivih~gsqnlrig~a~d~np~tv~~~iar~~rap~sdr~~~~p~l~p~~~e~~n~~~~~e 95 (618)
T KOG0797|consen 16 QPYLKGVEETQILEEEDAKLIVIHLGSQNLRIGLAMDENPFTVPNCIARYIRAPVSDRMLNTPVLTPQHVEERNYNSAAE 95 (618)
T ss_pred CCcccCCCccccccccCCCeeEecCCcchhhccccccCCCcccccceeecccCchhhhcccCcCCCccccccccccchhh
Confidence 479999999999999999999999999999999999999999999999998761 11111222222211 1111122
Q ss_pred HHHHHHHHHhhcCCCcchhhhhcCCCCcccccccccccccccccccccccccccCCCCCCCcccccccccccCcccccCC
Q 007655 76 RERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQ 155 (594)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~e~~~~ 155 (594)
+++...-.++.++.. +-+++ .|+.-.|.+.++++||+-.++|.+|.
T Consensus 96 f~~~lll~~s~lss~----------~~~kk------------------------~ri~v~~~~q~lkn~n~~S~aetvP~ 141 (618)
T KOG0797|consen 96 FLKILLLDESSLSSS----------ASRKK------------------------GRIDVYNQAQTLKNDNVASPAETVPD 141 (618)
T ss_pred hhHHHHHhhhhhhhH----------HHhhc------------------------CcccccCchHHhhcccccCccccCCC
Confidence 322222222222211 01112 23333477788899999999999984
Q ss_pred CC-Ccccccccccc------ccCCceEEccccccCCCCCCceEEcceecCeeeec-CCCChhhcHHHHHHHHHHHHhhhc
Q 007655 156 HR-NTDIKELNSSE------RKFREFICGEEALRVSPTEPYCIHRPIRRGHLNIS-QHYPMQQVLEDLYAIWDWILTEKL 227 (594)
Q Consensus 156 ~~-~~~~~~~~~~~------~~~~~~~vGdeAl~~~~~~~~~l~~Pi~~G~~n~~-~~~s~~~~~~dle~iw~~~l~~~L 227 (594)
.+ +.-+.+|...+ ....+-.+|++|..+ .+|.|++||++|.||++ +|+|+|+.+.|+++||+|++.+.|
T Consensus 142 ps~~~a~~~wld~e~~~hv~v~c~kr~~~ee~n~i---~~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L 218 (618)
T KOG0797|consen 142 PSASEAVPDWLDSEDTSHVKVKCRKRIFGEEANKI---SPYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKL 218 (618)
T ss_pred CCCCcCCCCccccccchHHHHHHHHHHhhhhhhcC---CcceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhc
Confidence 32 23333332211 123344566667666 48999999999999997 777999999999999999999999
Q ss_pred CCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCCceEEEEEeCCCceEEEEeeCCeec
Q 007655 228 HIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVAL 307 (594)
Q Consensus 228 ~i~~~d~~~y~~VLvip~~~~~~~vr~l~ellfE~~~f~~v~~~~esvla~ygaG~stg~VVDiG~~~TsV~pV~dG~vl 307 (594)
+|+++.+.+|++|||+||.|+++++++++.++|.+|+|.++.++|+++||+||+|++++||||||+++|+|+||+||.++
T Consensus 219 ~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGvs~ 298 (618)
T KOG0797|consen 219 HIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLSSACVVDIGAQKTSIACVEDGVSL 298 (618)
T ss_pred CCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCccceeEEEccCcceeEEEeecCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEecchHHHHHHHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHhcccccCCcccccee-eecccCCCCCCCce
Q 007655 308 PNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAV-VHSYEDGMPPGSHK 386 (594)
Q Consensus 308 ~~s~~~l~~GG~dit~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~-~~~~~~~~p~~~~k 386 (594)
++++++++|||+|||++|.++|++. .|| |+++++.+.+||.++++|||++|++..+++.++.. +..+++..| +.+
T Consensus 299 ~ntri~L~YGGdDitr~f~~ll~rs-~FP-y~d~~v~~~~d~lLl~~LKe~Fc~l~~a~~~vQ~~~F~~R~pn~~--~~k 374 (618)
T KOG0797|consen 299 PNTRIILPYGGDDITRCFLWLLRRS-GFP-YQDCDVLAPIDWLLLNQLKEKFCHLRAAELGVQLTVFSYREPNPP--TLK 374 (618)
T ss_pred cCceEEeccCCchHHHHHHHHHHhc-CCC-cccccccccccHHHHHHHHHHhccccHhhhhhhhhhhhccCCCCc--cee
Confidence 9999999999999999999999875 466 57778888999999999999999999876655322 222232233 556
Q ss_pred eEee---eeccCCCcCCCCcccCCCC--------CCCCCCCCCCCccccccCCccccCCC------------------CC
Q 007655 387 TRLI---ALNVPPMGLFYPKLLVPDV--------YPPPPRSWFNDYEDMLEDTWHTDFPR------------------RS 437 (594)
Q Consensus 387 ~~~~---~~~~aP~~lf~p~~~~~e~--------~~~p~~~~~~~~ed~~~d~~~~~~~~------------------r~ 437 (594)
|+|+ ++++|||+||+|.+|..+. +.+|.+.++.|++-.+.+++....+. |-
T Consensus 375 ytfk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~q~d~~d~fd~e~~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~~~ 454 (618)
T KOG0797|consen 375 YTFKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSFPQPDREDLFDYEYLLEDTWKQDFGGGGNDGLQLSDSIGFSNRIRD 454 (618)
T ss_pred eeeeccchhhccchhhhhhhhhhccccccccccccCCCCcccccchhhhhhhcccccccccccccccccccccccccccc
Confidence 7775 5789999999999997655 23333322222222222222111110 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCc-------cC-----------CCCCcccCCCHHHHHHHHHhccCChhHHHHHhcCeEEE
Q 007655 438 DISDNFYPGINVGLPMWESYPV-------LT-----------TKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLI 499 (594)
Q Consensus 438 ~~~E~lfp~~~~~~~~~~~~~~-------~~-----------~~~~~~~~~~L~~~I~~sI~~~~~~d~r~~L~~nIvL~ 499 (594)
..+|..-....|.. ..+.+.. .. ...+..-..+|+++|+.||..|...|.+++||++|+++
T Consensus 455 ~l~~~~d~~Elg~t-~~d~f~p~~~s~~gslaa~~i~n~~~~~~~f~gl~l~ldqsii~sid~~~sdd~~rKl~sSil~V 533 (618)
T KOG0797|consen 455 QLPEKPDKEELGVT-LKDNFAPLEKSIVGSLAAASIMNKKGLYESFYGLLLALDQSIISSIDSALSDDTKRKLFSSILLV 533 (618)
T ss_pred cccccccchhhccc-cccccCCchhhhhhhhhhhhhhcccceeccccchhhccchhHHHhhhhhccchhhHhhhhHHHhh
Confidence 11111000000000 0000000 00 00111113467889999999998889999999999999
Q ss_pred cCCCCcCChHHHHHHHHhhhCCC-CCCcceEEEcCCC--CCCceeEEeceeeecccCCccccceeHHHHHHcCCCeeeec
Q 007655 500 GGVALTGGLIPAVEERVLHAIPS-NEAIDMVEVLQSR--TNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGR 576 (594)
Q Consensus 500 GG~S~ipGf~eRL~~eL~~~~p~-~~~~~~V~v~~~~--~dp~~~aW~GgSIla~L~sf~~~wITr~eyee~G~~il~~K 576 (594)
||+.++|||.+.||+++....|+ ...+..|.|++++ |||++.+||||+|||.|+..+++||++.||..+|.|++..|
T Consensus 534 gga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~~~ELwI~~~dW~~~G~RvL~~k 613 (618)
T KOG0797|consen 534 GGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDFVRELWIENSDWQVHGVRVLQYK 613 (618)
T ss_pred cccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHHHHHHheechhHhhhhhhhhhhc
Confidence 99999999999999999998887 4456789999976 99999999999999999999999999999999999999999
Q ss_pred cc
Q 007655 577 KY 578 (594)
Q Consensus 577 ~~ 578 (594)
|+
T Consensus 614 ~~ 615 (618)
T KOG0797|consen 614 KY 615 (618)
T ss_pred cc
Confidence 87
No 2
>PTZ00452 actin; Provisional
Probab=100.00 E-value=1.2e-69 Score=578.28 Aligned_cols=323 Identities=21% Similarity=0.375 Sum_probs=274.4
Q ss_pred CceEEccccccCCCCCCceEEcceecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHH
Q 007655 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (594)
Q Consensus 172 ~~~~vGdeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~ 251 (594)
+++++|++|... ...+.|++||++|.+. |||++|.||+|+|.+.|+++++++ +||+++++++++.
T Consensus 50 ~~~~iG~~~~~~--~~~~~l~~Pi~~G~I~---------dwd~~e~iw~~~f~~~l~v~p~~~----pvlitE~~~~~~~ 114 (375)
T PTZ00452 50 KEYYVGEEAQAK--RGVLAIKEPIQNGIIN---------SWDDIEIIWHHAFYNELCMSPEDQ----PVFMTDAPMNSKF 114 (375)
T ss_pred cceEEChhhhcc--ccCcEEcccCcCCEEc---------CHHHHHHHHHHHHHhhcCCCcccC----ceeeecCCCCCHH
Confidence 357899999753 4679999999999998 999999999999999999999998 7999999998887
Q ss_pred HHH-HHHHHHHhcCCCeEEEeehhhHHhhhcCCceEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHH
Q 007655 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (594)
Q Consensus 252 vr~-l~ellfE~~~f~~v~~~~esvla~ygaG~stg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit~~l~~lL~ 330 (594)
.|+ ++|+|||.|++|+++++.+++||+|++|++||+|||+|++.|+|+||+||+++.+++.++++||+++|++|.++|+
T Consensus 115 ~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~ 194 (375)
T PTZ00452 115 NRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLCTDYLTQILQ 194 (375)
T ss_pred HHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceEEEEECCEEeccceEEeeccchHHHHHHHHHHH
Confidence 775 9999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hcCCCCCcccccccchhhHHHHHHHHHhcccccCCccccceeeecccCCCCCCCceeEeeeeccCCCcCCCCcccCCCCC
Q 007655 331 HHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVY 410 (594)
Q Consensus 331 ~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~~~~~e~~ 410 (594)
.++. ++....+..+++++||++|||+.+..+. ...+.. ......
T Consensus 195 ~~~~-------~~~~~~~~~~~~~iKe~~c~v~~d~~~e---~~~~~~-~~~~~~------------------------- 238 (375)
T PTZ00452 195 ELGY-------SLTEPHQRIIVKNIKERLCYTALDPQDE---KRIYKE-SNSQDS------------------------- 238 (375)
T ss_pred hcCC-------CCCCHHHHHHHHHHHHHhccccCcHHHH---HHHhhc-cCCcCc-------------------------
Confidence 6642 3445567889999999999998541100 000000 000000
Q ss_pred CCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhccCChhH
Q 007655 411 PPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDL 488 (594)
Q Consensus 411 ~~p~~~~~~~~ed~~~d~~~~~~~-~r~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~~sI~~~~~~d~ 488 (594)
.| .++|+..+.++ +|+.++|.|| |+..| .+..||+++|.+||.+| |.|+
T Consensus 239 ---------~y--~LPDg~~i~l~~er~~~~E~LF~P~~~g-----------------~~~~gi~~~i~~si~~c-~~d~ 289 (375)
T PTZ00452 239 ---------PY--KLPDGNILTIKSQKFRCSEILFQPKLIG-----------------LEVAGIHHLAYSSIKKC-DLDL 289 (375)
T ss_pred ---------eE--ECCCCCEEEeehHHhcCcccccChhhcC-----------------CCCCChhHHHHHHHHhC-CHhH
Confidence 00 23455555554 7999999999 66544 35679999999999999 9999
Q ss_pred HHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeecccCCccccceeHHHHHHc
Q 007655 489 QRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRN 568 (594)
Q Consensus 489 r~~L~~nIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla~L~sf~~~wITr~eyee~ 568 (594)
|++||+||+|+||+|++|||.+||++||+.++|... +|+|... .+|++++|+||||||+|++|+++||||+||+|+
T Consensus 290 r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~---~v~v~~~-~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~ 365 (375)
T PTZ00452 290 RQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQL---KIQVAAP-PDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQ 365 (375)
T ss_pred HHHhhccEEEecccccccCHHHHHHHHHHHhCCCCc---eeEEecC-CCcceeEEECchhhcCccchhhhEeEHHHHhcc
Confidence 999999999999999999999999999999998764 4677653 589999999999999999999999999999999
Q ss_pred CCCeeeeccc
Q 007655 569 GIHIGSGRKY 578 (594)
Q Consensus 569 G~~il~~K~~ 578 (594)
|.++++|||+
T Consensus 366 G~~i~~~k~~ 375 (375)
T PTZ00452 366 GPSIVHRKCF 375 (375)
T ss_pred CcceeeeecC
Confidence 9999999996
No 3
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=5.4e-69 Score=573.94 Aligned_cols=321 Identities=18% Similarity=0.352 Sum_probs=272.5
Q ss_pred CceEEccccccCCCCCCceEEcceecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHH
Q 007655 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (594)
Q Consensus 172 ~~~~vGdeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~ 251 (594)
++++||++|... +..+.++|||++|.+. |||++|.||+|+| ++|+++++++ +||+++++++++.
T Consensus 57 ~~~~vG~~~~~~--~~~~~l~~Pi~~G~v~---------dwd~~e~iw~~~f-~~l~v~~~~~----pvllte~~~~~~~ 120 (380)
T PTZ00466 57 GNIFVGNKAEEY--RGLLKVTYPINHGIIE---------NWNDMENIWIHVY-NSMKINSEEH----PVLLTEAPLNPQK 120 (380)
T ss_pred CCeEECchhhhh--CcCceeCccccCCeEC---------CHHHHHHHHHHHH-hhcccCCccC----eEEEecCccccHH
Confidence 357899999764 3578899999999998 9999999999998 7899998888 7999999998888
Q ss_pred HHH-HHHHHHHhcCCCeEEEeehhhHHhhhcCCceEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHH
Q 007655 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (594)
Q Consensus 252 vr~-l~ellfE~~~f~~v~~~~esvla~ygaG~stg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit~~l~~lL~ 330 (594)
.|+ ++|+|||.|++|+++++.+++||+||+|++||||||+|++.|+|+||+||+++.+++.++++||+++|++|.++|+
T Consensus 121 ~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~ 200 (380)
T PTZ00466 121 NKEKIAEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRDITTYLGYLLR 200 (380)
T ss_pred HHHHHHHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCceEEEEEECCEEeecceeEecCchhHHHHHHHHHHH
Confidence 775 9999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hcCCCCCcccccccchhhHHHHHHHHHhcccccCCccccceeeecccCCCCCCCceeEeeeeccCCCcCCCCcccCCCCC
Q 007655 331 HHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVY 410 (594)
Q Consensus 331 ~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~~~~~e~~ 410 (594)
.++. .+.+..+.++++++||++|+|+.+..... .... .+.....|
T Consensus 201 ~~~~-------~~~~~~~~~~v~~iKe~~c~v~~d~~~e~---~~~~--~~~~~~~y----------------------- 245 (380)
T PTZ00466 201 KNGH-------LFNTSAEMEVVKNMKENCCYVSFNMNKEK---NSSE--KALTTLPY----------------------- 245 (380)
T ss_pred hcCC-------CCCcHHHHHHHHHHHHhCeEecCChHHHH---hhcc--ccccceeE-----------------------
Confidence 6653 24445678899999999999986311000 0000 00000000
Q ss_pred CCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhccCChhH
Q 007655 411 PPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDL 488 (594)
Q Consensus 411 ~~p~~~~~~~~ed~~~d~~~~~~~-~r~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~~sI~~~~~~d~ 488 (594)
.++|+..+.++ +|+.++|.|| |+..| .+..||+++|.+||.+| |.|.
T Consensus 246 -------------~LPdg~~i~l~~er~~~~E~LF~P~~~g-----------------~~~~gl~~~i~~sI~~c-~~d~ 294 (380)
T PTZ00466 246 -------------ILPDGSQILIGSERYRAPEVLFNPSILG-----------------LEYLGLSELIVTSITRA-DMDL 294 (380)
T ss_pred -------------ECCCCcEEEEchHHhcCcccccCccccC-----------------CCCCCHHHHHHHHHHhC-Chhh
Confidence 13344455445 7999999999 66554 35679999999999999 9999
Q ss_pred HHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeecccCCccccceeHHHHHHc
Q 007655 489 QRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRN 568 (594)
Q Consensus 489 r~~L~~nIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla~L~sf~~~wITr~eyee~ 568 (594)
|+.||+||+|+||+|++|||.+||++||+.+.|... +|+|.. +.+|++++|+||||||++++|+++||||+||+|+
T Consensus 295 r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~---~v~v~~-~~~r~~~aW~GgSilasl~~f~~~~itk~eYeE~ 370 (380)
T PTZ00466 295 RRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDI---TIRISA-PPERKFSTFIGGSILASLATFKKIWISKQEFDEY 370 (380)
T ss_pred HHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCc---eEEEec-CCCCceeEEECchhhcCccchhhhEeEHHHHhhh
Confidence 999999999999999999999999999999998764 456664 3589999999999999999999999999999999
Q ss_pred CCCeeeeccc
Q 007655 569 GIHIGSGRKY 578 (594)
Q Consensus 569 G~~il~~K~~ 578 (594)
|+++++||||
T Consensus 371 G~~iv~rk~~ 380 (380)
T PTZ00466 371 GSVILHRKTF 380 (380)
T ss_pred CcHhheeecC
Confidence 9999999986
No 4
>PTZ00281 actin; Provisional
Probab=100.00 E-value=9.1e-68 Score=564.96 Aligned_cols=323 Identities=19% Similarity=0.368 Sum_probs=273.2
Q ss_pred CceEEccccccCCCCCCceEEcceecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHH
Q 007655 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (594)
Q Consensus 172 ~~~~vGdeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~ 251 (594)
+++++|++|+.. +..+.+++||++|.+. ||++++.||+|+|.+.|+++++++ +|||++++++++.
T Consensus 51 ~~~~~g~~~~~~--~~~~~l~~Pi~~G~i~---------dwd~~e~l~~~~f~~~l~v~p~~~----pvllte~~~~~~~ 115 (376)
T PTZ00281 51 KDSYVGDEAQSK--RGILTLKYPIEHGIVT---------NWDDMEKIWHHTFYNELRVAPEEH----PVLLTEAPLNPKA 115 (376)
T ss_pred CCeEECchhhcc--ccCcEEeccCcCCEEc---------CHHHHHHHHHHHHHhhccCCCccC----eEEEecCCCCcHH
Confidence 357899998753 4679999999999998 999999999999998999999998 7999999998888
Q ss_pred HHH-HHHHHHHhcCCCeEEEeehhhHHhhhcCCceEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHH
Q 007655 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (594)
Q Consensus 252 vr~-l~ellfE~~~f~~v~~~~esvla~ygaG~stg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit~~l~~lL~ 330 (594)
.|+ ++|+|||.|+||+++++.+++||+|++|++||||||+|++.|+|+||+||+++.+++.++++||+++|++|.++|.
T Consensus 116 ~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~ 195 (376)
T PTZ00281 116 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILT 195 (376)
T ss_pred HHHHHHHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCceEEEEEEEecccchhheeeccCcHHHHHHHHHHHHH
Confidence 775 9999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hcCCCCCcccccccchhhHHHHHHHHHhcccccCCccccceeeecccCCCCCCCceeEeeeeccCCCcCCCCcccCCCCC
Q 007655 331 HHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVY 410 (594)
Q Consensus 331 ~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~~~~~e~~ 410 (594)
.++. ++.+..+.+++++|||++|||+.+.... ..... ..+....
T Consensus 196 ~~~~-------~~~~~~~~~~~~~iKe~~c~v~~d~~~~---~~~~~-~~~~~~~------------------------- 239 (376)
T PTZ00281 196 ERGY-------SFTTTAEREIVRDIKEKLAYVALDFEAE---MQTAA-SSSALEK------------------------- 239 (376)
T ss_pred hcCC-------CCCcHHHHHHHHHHHHhcEEecCCchHH---HHhhh-cCcccce-------------------------
Confidence 6542 3445567899999999999998531100 00000 0000000
Q ss_pred CCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhccCChhH
Q 007655 411 PPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDL 488 (594)
Q Consensus 411 ~~p~~~~~~~~ed~~~d~~~~~~~-~r~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~~sI~~~~~~d~ 488 (594)
.| .++|+..+.++ +|+.++|.|| |...+ .+..||+++|.+||.+| |.|+
T Consensus 240 ---------~y--~LPdg~~i~i~~er~~~~E~LF~P~~~~-----------------~~~~gi~~~i~~sI~~~-~~d~ 290 (376)
T PTZ00281 240 ---------SY--ELPDGQVITIGNERFRCPEALFQPSFLG-----------------MESAGIHETTYNSIMKC-DVDI 290 (376)
T ss_pred ---------eE--ECCCCCEEEeeHHHeeCcccccChhhcC-----------------CCCCCHHHHHHHHHHhC-ChhH
Confidence 00 13344445454 7999999999 65543 35679999999999999 9999
Q ss_pred HHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeecccCCccccceeHHHHHHc
Q 007655 489 QRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRN 568 (594)
Q Consensus 489 r~~L~~nIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla~L~sf~~~wITr~eyee~ 568 (594)
|+.||+||+|+||+|+||||.+||++||+.+.|... +|+|... .+|++++|+||||+|++++|+++||||+||+|+
T Consensus 291 r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~---~v~v~~~-~~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~ 366 (376)
T PTZ00281 291 RKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTM---KIKIIAP-PERKYSVWIGGSILASLSTFQQMWISKEEYDES 366 (376)
T ss_pred HHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCc---ceEEecC-CCCceeEEECcccccCcccHhhceeeHHHHhhh
Confidence 999999999999999999999999999999998764 4677653 589999999999999999999999999999999
Q ss_pred CCCeeeeccc
Q 007655 569 GIHIGSGRKY 578 (594)
Q Consensus 569 G~~il~~K~~ 578 (594)
|.++++|||+
T Consensus 367 G~~~~~~k~~ 376 (376)
T PTZ00281 367 GPSIVHRKCF 376 (376)
T ss_pred CchheeeecC
Confidence 9999999986
No 5
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=7.3e-68 Score=549.11 Aligned_cols=318 Identities=24% Similarity=0.435 Sum_probs=269.9
Q ss_pred CceEEccccccCCCCCCceEEcceecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHH
Q 007655 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (594)
Q Consensus 172 ~~~~vGdeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~ 251 (594)
++.+||++|.... .|+|||+||.++ ||++|+.||+|+|+++|.+.|+++ |||+++++++++.
T Consensus 52 ~~~~vg~~a~~~~-----~l~~Pie~Giv~---------~wd~me~iw~~if~~~L~~~Pee~----pvllte~pl~p~~ 113 (372)
T KOG0676|consen 52 KDTYVGDEAESKR-----TLKYPIERGIVT---------DWDDMEKIWHHLFYSELLVAPEEH----PVLLTEPPLNPKA 113 (372)
T ss_pred cccccchhhhccc-----cccCcccccccc---------chHHHHHHHHHHHHHhhccCcccC----ceEeecCCCCchH
Confidence 4567899998752 889999999998 999999999999999999999998 7999999999998
Q ss_pred HHH-HHHHHHHhcCCCeEEEeehhhHHhhhcCCceEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHH
Q 007655 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (594)
Q Consensus 252 vr~-l~ellfE~~~f~~v~~~~esvla~ygaG~stg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit~~l~~lL~ 330 (594)
.|+ |+|+|||.|++|++++..++++ |++|++||||||+|++.|+++||+||+++++++.++++||+|+|++|.+.|.
T Consensus 114 nREk~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt~~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~ 191 (372)
T KOG0676|consen 114 NREKLTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVTHVVPIYEGYALPHAILRLDLAGRDLTDYLLKQLR 191 (372)
T ss_pred hHHHHHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCceeeeecccccccchhhheecccchhhHHHHHHHHH
Confidence 885 9999999999999999777766 9999999999999999999999999999999999999999999999998887
Q ss_pred hcCCCCCcccccccchhhHHHHHHHHHhcccccCCccccceeeecccCCCCCCCceeEeeeeccCCCcCCCCcccCCCCC
Q 007655 331 HHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVY 410 (594)
Q Consensus 331 ~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~~~~~e~~ 410 (594)
+.+ +++....++++++++||++||++.+ .... ... .+... . +.
T Consensus 192 ~~g-------~s~~~~~~~eIv~diKeklCyvald-~~~e--~~~-----~~~~~--~----------------l~---- 234 (372)
T KOG0676|consen 192 KRG-------YSFTTSAEFEIVRDIKEKLCYVALD-FEEE--EET-----ANTSS--S----------------LE---- 234 (372)
T ss_pred hcc-------cccccccHHHHHHHhHhhhcccccc-cchh--hhc-----ccccc--c----------------cc----
Confidence 754 2566677899999999999999862 1110 000 00000 0 00
Q ss_pred CCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhccCChhH
Q 007655 411 PPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDL 488 (594)
Q Consensus 411 ~~p~~~~~~~~ed~~~d~~~~~~~-~r~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~~sI~~~~~~d~ 488 (594)
.+|+ ++|+..+.++ +|+.++|.+| |+..| .+..||++++.+||.+| +.|+
T Consensus 235 --------~~y~--lPDg~~i~i~~erf~~pE~lFqP~~~g-----------------~e~~gi~~~~~~sI~kc-d~dl 286 (372)
T KOG0676|consen 235 --------SSYE--LPDGQKITIGNERFRCPEVLFQPSLLG-----------------MESPGIHELTVNSIMKC-DIDL 286 (372)
T ss_pred --------cccc--CCCCCEEecCCcccccchhcCChhhcC-----------------CCCCchhHHHHHHHHhC-ChhH
Confidence 0111 2344434443 7999999999 66555 57789999999999999 9999
Q ss_pred HHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeecccCCccccceeHHHHHHc
Q 007655 489 QRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRN 568 (594)
Q Consensus 489 r~~L~~nIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla~L~sf~~~wITr~eyee~ 568 (594)
|++||+||+|+||++++|||.+||++||+.+.|...+ ++|+++ .++.+++|+||||+|+|++|+++||||+||+|.
T Consensus 287 rk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~~---ikv~~p-p~r~~s~WlGgSIlaslstfq~~witk~eY~e~ 362 (372)
T KOG0676|consen 287 RKDLYENIVLSGGTTMFPGLADRLQKELQALAPSTIK---IKVIAP-PERKYSAWLGGSILASLSTFQQMWITKEEYEEH 362 (372)
T ss_pred hHHHHhheEEeCCcccchhHHHHHHHHHhhcCCCCcc---eEEecC-cccccceecCceeEeecchHhhccccHHHHhhh
Confidence 9999999999999999999999999999999997764 566653 577899999999999999999999999999999
Q ss_pred CCCeeeeccc
Q 007655 569 GIHIGSGRKY 578 (594)
Q Consensus 569 G~~il~~K~~ 578 (594)
|+++++||||
T Consensus 363 g~~~~~rk~f 372 (372)
T KOG0676|consen 363 GPSIIHRKCF 372 (372)
T ss_pred CCceeeeccC
Confidence 9999999997
No 6
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=4.7e-66 Score=552.34 Aligned_cols=323 Identities=20% Similarity=0.374 Sum_probs=270.7
Q ss_pred CceEEccccccCCCCCCceEEcceecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHH
Q 007655 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (594)
Q Consensus 172 ~~~~vGdeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~ 251 (594)
+.+++|++|... ...+.+++||++|.+. ||++++.||+|+|.++|++++.++ +||+++++++++.
T Consensus 51 ~~~~~g~~~~~~--~~~~~l~~Pi~~G~i~---------d~d~~e~i~~~~~~~~l~v~~~~~----pvllte~~~~~~~ 115 (378)
T PTZ00004 51 KDCYVGDEAQDK--RGILTLKYPIEHGIVT---------NWDDMEKIWHHTFYNELRVAPEEH----PVLLTEAPLNPKA 115 (378)
T ss_pred CceEECchhhcc--cccceEcccCcCCEEc---------CHHHHHHHHHHHHHhhcccCCccC----cceeecCCCCcHH
Confidence 357899998754 3568999999999998 999999999999988999998888 7999999888877
Q ss_pred HHH-HHHHHHHhcCCCeEEEeehhhHHhhhcCCceEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHH
Q 007655 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (594)
Q Consensus 252 vr~-l~ellfE~~~f~~v~~~~esvla~ygaG~stg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit~~l~~lL~ 330 (594)
.|+ ++++|||.|+|++++++.+++||+|++|++||||||+|++.|+|+||+||+++.+++.++++||+++|++|.++|+
T Consensus 116 ~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~ 195 (378)
T PTZ00004 116 NREKMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILH 195 (378)
T ss_pred HHHHHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCcEEEEEEECCEEeecceeeecccHHHHHHHHHHHHH
Confidence 774 9999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hcCCCCCcccccccchhhHHHHHHHHHhcccccCCccccceeeecccCCCCCC-CceeEeeeeccCCCcCCCCcccCCCC
Q 007655 331 HHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPG-SHKTRLIALNVPPMGLFYPKLLVPDV 409 (594)
Q Consensus 331 ~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~-~~k~~~~~~~~aP~~lf~p~~~~~e~ 409 (594)
.++. .+....+..+++++||++|+|+.+-.+. ..... ..++. ...|
T Consensus 196 ~~~~-------~~~~~~~~~~~~~iKe~~c~v~~d~~~~---~~~~~-~~~~~~~~~y---------------------- 242 (378)
T PTZ00004 196 ERGT-------TFTTTAEKEIVRDIKEKLCYIALDFDEE---MGNSA-GSSDKYEESY---------------------- 242 (378)
T ss_pred hcCC-------CCCcHHHHHHHHHHhhcceeecCCHHHH---Hhhhh-cCccccceEE----------------------
Confidence 6642 2444567889999999999998531100 00000 00000 0000
Q ss_pred CCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCccc-CCCHHHHHHHHHhccCCh
Q 007655 410 YPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEE-KIGLAEAVTSSILSTGRI 486 (594)
Q Consensus 410 ~~~p~~~~~~~~ed~~~d~~~~~~~-~r~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~~I~~sI~~~~~~ 486 (594)
.++|+..+.++ +|+.++|.|| |+..+ .+ ..||+++|.+||.+| |.
T Consensus 243 --------------~lPdg~~i~l~~er~~~~E~LF~P~~~~-----------------~~~~~gi~~~i~~sI~~~-~~ 290 (378)
T PTZ00004 243 --------------ELPDGTIITVGSERFRCPEALFQPSLIG-----------------KEEPPGIHELTFQSINKC-DI 290 (378)
T ss_pred --------------ECCCCCEEEEcHHHeeCcccccChhhcC-----------------ccccCChHHHHHHHHHhC-Ch
Confidence 13344445445 6999999999 65443 23 679999999999999 99
Q ss_pred hHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeecccCCccccceeHHHHH
Q 007655 487 DLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWI 566 (594)
Q Consensus 487 d~r~~L~~nIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla~L~sf~~~wITr~eye 566 (594)
|+|+.|++||+|+||+|++|||.+||++||+.++|... +++|.. ..+|++++|+||||+|++++|+++||||+||+
T Consensus 291 d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~---~~~v~~-~~~~~~~aW~Ggsilas~~~f~~~~vtk~eYe 366 (378)
T PTZ00004 291 DIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTM---KIKVVA-PPERKYSVWIGGSILSSLPTFQQMWVTKEEYD 366 (378)
T ss_pred hHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCc---cEEEec-CCCCceeEEECcccccCccchhhhEeEHHHHh
Confidence 99999999999999999999999999999999999765 356654 35899999999999999999999999999999
Q ss_pred HcCCCeeeeccc
Q 007655 567 RNGIHIGSGRKY 578 (594)
Q Consensus 567 e~G~~il~~K~~ 578 (594)
|+|.++++||||
T Consensus 367 E~G~~~~~rk~~ 378 (378)
T PTZ00004 367 ESGPSIVHRKCF 378 (378)
T ss_pred hhCcceEEeecC
Confidence 999999999996
No 7
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=1.1e-66 Score=525.22 Aligned_cols=339 Identities=20% Similarity=0.352 Sum_probs=269.0
Q ss_pred CceEEccccccCCCCCCceEEcceecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHH
Q 007655 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (594)
Q Consensus 172 ~~~~vGdeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~ 251 (594)
+.+|+|++|+..+ ++++.+..||++|++. |||.++.+|+|+|.++|.++|.++ |+|+++++++.+.
T Consensus 55 ~~~y~~~~ai~~p-r~gmEv~~~i~nGlv~---------dWD~~~~~w~~~~~~~Lk~~p~eh----P~litEp~wN~~~ 120 (426)
T KOG0679|consen 55 KGYYVDENAIHVP-RPGMEVKTPIKNGLVE---------DWDLFEMQWRYAYKNQLKVNPEEH----PVLITEPPWNTRA 120 (426)
T ss_pred cceEeechhccCC-CCCCeeccchhcCCcc---------cHHHHHHHHHHHHhhhhhcCcccc----ceeeecCCCCcHH
Confidence 4589999999987 5799999999999998 999999999999999999999998 7999999999999
Q ss_pred HHH-HHHHHHHhcCCCeEEEeehhhHHhhhcCCceEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHH
Q 007655 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (594)
Q Consensus 252 vr~-l~ellfE~~~f~~v~~~~esvla~ygaG~stg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit~~l~~lL~ 330 (594)
.|+ ++|++||.|+||++|++.+++|++|++|++||||||||+..|+|+||+||+++.+++++.++||+.|+..+.++|+
T Consensus 121 ~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa~~~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~ 200 (426)
T KOG0679|consen 121 NREKLTELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGATHTSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLE 200 (426)
T ss_pred HHHHHHHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecCCCceeeeeecceEeeeeeEecccchHHHHHHHHHHHh
Confidence 885 9999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCC--CCCcc--------cccccc----------------hhhHHHHHHHHHhcccccCCccccceeeecccCCCCCCC
Q 007655 331 HHQT--WPQIR--------TDILTK----------------AMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGS 384 (594)
Q Consensus 331 ~~~~--~p~~~--------~~~l~~----------------~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~ 384 (594)
..+. .|.|. .....+ .....++++.|+.+|.|.+...
T Consensus 201 ~~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~~~~v~~e~ke~v~qv~dtp~----------------- 263 (426)
T KOG0679|consen 201 PKNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYMEQRVYQEFKESVLQVSDTPF----------------- 263 (426)
T ss_pred hcCcccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-----------------
Confidence 7632 22211 000000 0011234444444444432111
Q ss_pred ceeEeeeeccCCCcCCCCcccCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCC
Q 007655 385 HKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTT 462 (594)
Q Consensus 385 ~k~~~~~~~~aP~~lf~p~~~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~-~r~~~~E~lf-p~~~~~~~~~~~~~~~~~ 462 (594)
+..... ..|+ -...+++++...++ +|+.+||.|| |+...+++.....
T Consensus 264 ----------------de~~~~----~i~~------~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~----- 312 (426)
T KOG0679|consen 264 ----------------DEEVAA----QIPT------KHFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAGA----- 312 (426)
T ss_pred ----------------cccccc----cCCC------ccccCCCCcccccCcceeecchhhcCcchhccccccccC-----
Confidence 000000 0011 11245667777777 7899999999 6654322110000
Q ss_pred CCCcccCCCHHHHHHHHHhccCChhHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcC--CCCCCce
Q 007655 463 KPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQ--SRTNPTY 540 (594)
Q Consensus 463 ~~~~~~~~~L~~~I~~sI~~~~~~d~r~~L~~nIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~~~~V~v~~--~~~dp~~ 540 (594)
........||++++..||..| |.|+|..||+||||+||+|+|+||.+||++||..+.|.. + ++++. ..++|++
T Consensus 313 ~~~~n~~lG~~~lv~sSi~~c-DvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~s-r---lki~as~~t~eR~~ 387 (426)
T KOG0679|consen 313 TSHINTMLGLPHLVYSSINMC-DVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSS-R---LKIIASGHTVERRF 387 (426)
T ss_pred CCCCccccCchHHHHhhhccC-hHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcc-e---EEEEecCceeeehh
Confidence 001134679999999999999 999999999999999999999999999999999999986 4 45555 3479999
Q ss_pred eEEeceeeecccCCccccceeHHHHHHcCC-Ceeeecc
Q 007655 541 VSWKGGAVLGILDFGRDAWIHREDWIRNGI-HIGSGRK 577 (594)
Q Consensus 541 ~aW~GgSIla~L~sf~~~wITr~eyee~G~-~il~~K~ 577 (594)
++|+||||||+|++|++|||||+||||.|. +.+.|||
T Consensus 388 ~~WlGGSILASLgtFqq~WiSKqEYEE~G~d~~ve~rc 425 (426)
T KOG0679|consen 388 QSWLGGSILASLGTFQQLWISKQEYEEVGKDQLVERRC 425 (426)
T ss_pred hhhhhhHHHhccccHHHHhhhHHHHHHhhhHHHHhhcC
Confidence 999999999999999999999999999999 7777766
No 8
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=6.3e-64 Score=542.33 Aligned_cols=330 Identities=23% Similarity=0.337 Sum_probs=266.2
Q ss_pred CceEEccccccCCCCCCceEEcceecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHH
Q 007655 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (594)
Q Consensus 172 ~~~~vGdeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~ 251 (594)
.++++|++|+..+ ..+.+++||++|.+. ||+++|.||+|+|.+.|++++.++ ++|+++++++++.
T Consensus 52 ~~~~vG~ea~~~~--~~~~l~~Pi~~G~I~---------dwd~~e~l~~~~~~~~L~~~p~~~----~vllte~~~~~~~ 116 (414)
T PTZ00280 52 LDFYIGDEALAAS--KSYTLTYPMKHGIVE---------DWDLMEKFWEQCIFKYLRCEPEEH----YFILTEPPMNPPE 116 (414)
T ss_pred CCEEEcchhhhCc--CCcEEecCccCCEeC---------CHHHHHHHHHHHHHHhhccCCCCC----ceEEeeCCCCcHH
Confidence 3578999998764 579999999999998 999999999999989999999988 6899999888877
Q ss_pred HHH-HHHHHHHhcCCCeEEEeehhhHHhhhc----------CCceEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHH
Q 007655 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGN----------GLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGED 320 (594)
Q Consensus 252 vr~-l~ellfE~~~f~~v~~~~esvla~yga----------G~stg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~d 320 (594)
.|+ ++|+|||.|++|+++++.+++||+||+ |++||||||+|++.|+|+||+||+++.+++.++++||++
T Consensus 117 ~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~ 196 (414)
T PTZ00280 117 NREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRD 196 (414)
T ss_pred HHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEECCEEcccceEEecCcHHH
Confidence 775 999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHhcccccCCccccceeeecccCCCCCC-CceeEeeeeccCCCcC
Q 007655 321 ISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPG-SHKTRLIALNVPPMGL 399 (594)
Q Consensus 321 it~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~-~~k~~~~~~~~aP~~l 399 (594)
||++|.++|+.++. ++....+.++++++||++||++.+-.+ ....+.. .+.. ..++.+ |..
T Consensus 197 lt~~L~~lL~~~~~-------~~~~~~~~~~~~~iKe~~c~v~~d~~~---e~~~~~~-~~~~~~~~~~~------~d~- 258 (414)
T PTZ00280 197 ITNFIQQMLRERGE-------PIPAEDILLLAQRIKEKYCYVAPDIAK---EFEKYDS-DPKNHFKKYTA------VNS- 258 (414)
T ss_pred HHHHHHHHHHHcCC-------CCCcHHHHHHHHHHHHhcCcccCcHHH---HHHHhhc-CcccccceEEC------CCC-
Confidence 99999999976542 233345678999999999999864111 1111110 0100 000100 000
Q ss_pred CCCcccCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHHHH
Q 007655 400 FYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVT 477 (594)
Q Consensus 400 f~p~~~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~-~r~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~ 477 (594)
. ...+..+.++ +|+.++|.|| |...+. ....||+++|.
T Consensus 259 ----------------------~--~g~~~~i~l~~erf~~~E~LF~P~~~~~----------------~~~~gl~e~i~ 298 (414)
T PTZ00280 259 ----------------------V--TKKPYTVDVGYERFLGPEMFFHPEIFSS----------------EWTTPLPEVVD 298 (414)
T ss_pred ----------------------C--CCCccEEEechHHhcCcccccChhhcCC----------------ccCCCHHHHHH
Confidence 0 0001123333 7999999999 654331 12459999999
Q ss_pred HHHhccCChhHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCC--------------CCcceEEEcCCCCCCceeEE
Q 007655 478 SSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSN--------------EAIDMVEVLQSRTNPTYVSW 543 (594)
Q Consensus 478 ~sI~~~~~~d~r~~L~~nIvL~GG~S~ipGf~eRL~~eL~~~~p~~--------------~~~~~V~v~~~~~dp~~~aW 543 (594)
+||.+| |.|+|++||+||+|+||+|+||||.+||++||+.++|.. ..+ +|+|... .++++++|
T Consensus 299 ~sI~~~-~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~-~v~v~~~-~~~~~~~W 375 (414)
T PTZ00280 299 DAIQSC-PIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPI-DVNVVSH-PRQRYAVW 375 (414)
T ss_pred HHHHhC-ChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHHHhccccccccccccccccCCCCc-eEEEecC-CccceeEE
Confidence 999999 899999999999999999999999999999999987531 112 5677653 47889999
Q ss_pred eceeeecccCCccccceeHHHHHHcCCCeeeecc
Q 007655 544 KGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRK 577 (594)
Q Consensus 544 ~GgSIla~L~sf~~~wITr~eyee~G~~il~~K~ 577 (594)
+||||||++++|+++||||+||+|+|.+++++|.
T Consensus 376 ~GgSilas~~~f~~~~itk~eY~E~G~~i~~~~~ 409 (414)
T PTZ00280 376 YGGSMLASSPEFEKVCHTKAEYDEYGPSICRYNN 409 (414)
T ss_pred EChhhcccCcchhhheEEHHHHhccChHheeecc
Confidence 9999999999999999999999999999998873
No 9
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=7.4e-64 Score=538.85 Aligned_cols=330 Identities=26% Similarity=0.464 Sum_probs=255.7
Q ss_pred ceEEccccccCCCCCCceEEcceecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHH
Q 007655 173 EFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREI 252 (594)
Q Consensus 173 ~~~vGdeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~v 252 (594)
++++|++++. ....+.+++|+++|.++ +|++++.||+|+|.+.|.++++++ +||++++++.++..
T Consensus 45 ~~~~g~~~~~--~~~~~~~~~p~~~g~i~---------~~~~~e~i~~~~~~~~l~~~~~~~----~vll~~~~~~~~~~ 109 (393)
T PF00022_consen 45 DYYVGDEALS--PRSNLELRSPIENGVIV---------DWDALEEIWDYIFSNLLKVDPSDH----PVLLTEPPFNPRSQ 109 (393)
T ss_dssp SCEETHHHHH--TGTGEEEEESEETTEES---------SHHHHHHHHHHHHHTTT-SSGGGS----EEEEEESTT--HHH
T ss_pred eEEeeccccc--chhheeeeeeccccccc---------cccccccccccccccccccccccc----eeeeeccccCCchh
Confidence 4678888665 24689999999999998 999999999999988899998888 68888888877666
Q ss_pred H-HHHHHHHHhcCCCeEEEeehhhHHhhhcCCceEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHHh
Q 007655 253 K-EMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRH 331 (594)
Q Consensus 253 r-~l~ellfE~~~f~~v~~~~esvla~ygaG~stg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit~~l~~lL~~ 331 (594)
| +++++|||.|+|++++++++++||+|++|.+||||||+|++.|+|+||+||+++.+++.++++||+++|++|.++|+.
T Consensus 110 r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~ 189 (393)
T PF00022_consen 110 REKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSSTSVVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKE 189 (393)
T ss_dssp HHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-EEEEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcccccceeeeeecccccccccccccccccccceeeeeeeeeeeccccccccccccccHHHHHHHHHHHHHh
Confidence 6 599999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCC--CCCcc--------cccccchhhHHHHHHHHHhcccccCCccc--cc----eeeecccCCCCCCCceeEeeeeccC
Q 007655 332 HQT--WPQIR--------TDILTKAMDLLMLNRIKESYCEIKEGEID--AV----AVVHSYEDGMPPGSHKTRLIALNVP 395 (594)
Q Consensus 332 ~~~--~p~~~--------~~~l~~~~d~~l~e~lKe~~c~v~~~~~~--~~----~~~~~~~~~~p~~~~k~~~~~~~~a 395 (594)
++. .|.+. ...+....+..+++++|+++|+++..... .. .....|. +|++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~--lPdg------------ 255 (393)
T PF00022_consen 190 RNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYE--LPDG------------ 255 (393)
T ss_dssp T-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE---TTS------------
T ss_pred hccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceecc--cccc------------
Confidence 421 11111 11233445788999999999999975331 00 0001111 2222
Q ss_pred CCcCCCCcccCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHH
Q 007655 396 PMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLA 473 (594)
Q Consensus 396 P~~lf~p~~~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~-~r~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 473 (594)
..+.++ +|+.++|.|| |...+.... ....+..||+
T Consensus 256 ---------------------------------~~i~~~~er~~~~E~LF~p~~~~~~~~----------~~~~~~~gL~ 292 (393)
T PF00022_consen 256 ---------------------------------QTIILGKERFRIPEILFNPSLIGIDSA----------SEPSEFMGLP 292 (393)
T ss_dssp ---------------------------------SEEEESTHHHHHHHTTTSGGGGTSSST----------S---SSSCHH
T ss_pred ---------------------------------ccccccccccccccccccccccccccc----------ccccccchhh
Confidence 222222 4677788888 443321000 0002346999
Q ss_pred HHHHHHHhccCChhHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeecccC
Q 007655 474 EAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILD 553 (594)
Q Consensus 474 ~~I~~sI~~~~~~d~r~~L~~nIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla~L~ 553 (594)
++|.+||.+| +.|+|++|++||+|+||+|++|||.+||++||..+.|... +++|+..+.+|.+++|+||||||+|+
T Consensus 293 ~~I~~si~~~-~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~---~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 293 ELILDSISKC-PIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSST---KVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp HHHHHHHHTS-TTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTS---TEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred hhhhhhhhcc-ccccccccccceEEecccccccchHHHHHHHhhhhhhccc---cceeccCchhhhhcccccceeeeccc
Confidence 9999999999 8999999999999999999999999999999999987765 45666533389999999999999999
Q ss_pred CccccceeHHHHHHcCCCeeeeccc
Q 007655 554 FGRDAWIHREDWIRNGIHIGSGRKY 578 (594)
Q Consensus 554 sf~~~wITr~eyee~G~~il~~K~~ 578 (594)
+|+++||||+||+|+|+++++|||+
T Consensus 369 ~f~~~~itr~eYeE~G~~~i~rkc~ 393 (393)
T PF00022_consen 369 SFQSFWITREEYEEYGPSIIHRKCF 393 (393)
T ss_dssp GGGGTSEEHHHHHHHGGGGHHHHT-
T ss_pred cccceeeeHHHHhCcCcceeeecCC
Confidence 9999999999999999999999996
No 10
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=1.5e-62 Score=471.29 Aligned_cols=316 Identities=23% Similarity=0.442 Sum_probs=269.2
Q ss_pred CceEEccccccCCCCCCceEEcceecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHH
Q 007655 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (594)
Q Consensus 172 ~~~~vGdeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~ 251 (594)
+++.|||||-.+. .-+.+.|||++|.+. +|+||+.+|+|+|.++|+|+|++.+ +|++++++++..
T Consensus 51 KD~mvGdeaselR--s~L~i~YPmeNGivr---------nwddM~h~WDytF~ekl~idp~~~K----iLLTePPmNP~k 115 (389)
T KOG0677|consen 51 KDLMVGDEASELR--SLLDINYPMENGIVR---------NWDDMEHVWDYTFGEKLKIDPTNCK----ILLTEPPMNPTK 115 (389)
T ss_pred hhheccchHHHHH--HHHhcCCcccccccc---------ChHHHHHHHHhhhhhhccCCCccCe----EEeeCCCCCccc
Confidence 6789999997763 568899999999998 9999999999999999999999984 899999999988
Q ss_pred HHH-HHHHHHHhcCCCeEEEeehhhHHhhhcCCceEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHH
Q 007655 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (594)
Q Consensus 252 vr~-l~ellfE~~~f~~v~~~~esvla~ygaG~stg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit~~l~~lL~ 330 (594)
.|+ |+|++||.+||.++|++-++|+++|+.|..||+|||.|.+.|+||||+||+++++-..|++++|+|+|.||.+||.
T Consensus 116 NREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGVTHi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl 195 (389)
T KOG0677|consen 116 NREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLL 195 (389)
T ss_pred cHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCeeEEeeeecceehhhhhhhccccchhHHHHHHHHHH
Confidence 775 9999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCcccccccchhhHHHHHHHHHhcccccCC-ccc------cceeeecccCCCCCCCceeEeeeeccCCCcCCCCc
Q 007655 331 HHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEG-EID------AVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPK 403 (594)
Q Consensus 331 ~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~-~~~------~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~ 403 (594)
.++. .++...|++.++++||++||++-+ +++ +......|
T Consensus 196 ~rGY-------afN~tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~Y--------------------------- 241 (389)
T KOG0677|consen 196 RRGY-------AFNHTADFETVREIKEKLCYISYDLELEQKLALETTVLVESY--------------------------- 241 (389)
T ss_pred hhcc-------ccccccchHHHHHHHhhheeEeechhhhhHhhhhheeeeeee---------------------------
Confidence 7763 678889999999999999999843 110 00111111
Q ss_pred ccCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHh
Q 007655 404 LLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSIL 481 (594)
Q Consensus 404 ~~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~-~r~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~~sI~ 481 (594)
.++|+..+..+ |||.+||.|| |..+. .+..|+.++++++|+
T Consensus 242 --------------------tLPDGRvIkvG~ERFeAPE~LFqP~Li~-----------------VE~~G~aellF~~iQ 284 (389)
T KOG0677|consen 242 --------------------TLPDGRVIKVGGERFEAPEALFQPHLIN-----------------VEGPGVAELLFNTIQ 284 (389)
T ss_pred --------------------ecCCCcEEEecceeccCchhhcCcceec-----------------cCCCcHHHHHHHHHH
Confidence 23455555555 7999999999 66654 467899999999999
Q ss_pred ccCChhHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhC-----CCC-CCcc--eEEEcCCCCCCceeEEeceeeeccc-
Q 007655 482 STGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAI-----PSN-EAID--MVEVLQSRTNPTYVSWKGGAVLGIL- 552 (594)
Q Consensus 482 ~~~~~d~r~~L~~nIvL~GG~S~ipGf~eRL~~eL~~~~-----p~~-~~~~--~V~v~~~~~dp~~~aW~GgSIla~L- 552 (594)
.+ ++|.|..||.+|+|+||+++.|||..||++||+.+. ..+ .++. +|+|-. +..+.+.+++||++||.+
T Consensus 285 aa-DiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkqlyl~rVL~~d~~~l~KfkiRIEd-PPrRKhMVflGGAVLA~im 362 (389)
T KOG0677|consen 285 AA-DIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQLYLDRVLKGDTDKLKKFKIRIED-PPRRKHMVFLGGAVLAGIM 362 (389)
T ss_pred Hh-ccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHHHHHHHHcCChhhhhheEEeccC-CCccceeEEEchHHHHHHh
Confidence 98 999999999999999999999999999999998752 111 1122 455543 456889999999999997
Q ss_pred CCccccceeHHHHHHcCCCeeee
Q 007655 553 DFGRDAWIHREDWIRNGIHIGSG 575 (594)
Q Consensus 553 ~sf~~~wITr~eyee~G~~il~~ 575 (594)
..-.++|+||+||+|.|.+++.+
T Consensus 363 kD~d~fW~skqeyqE~G~~~l~k 385 (389)
T KOG0677|consen 363 KDKDEFWMSKQEYQEEGINVLNK 385 (389)
T ss_pred cCCccceecHHHHHhhhHHHHHh
Confidence 56679999999999999998853
No 11
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=2.1e-60 Score=508.66 Aligned_cols=324 Identities=22% Similarity=0.408 Sum_probs=265.3
Q ss_pred CceEEccccccCCCCCCceEEcceecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHH
Q 007655 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (594)
Q Consensus 172 ~~~~vGdeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~ 251 (594)
+.+++|++|.... ..+.+++||++|.+. ||++++.||+|+|.+.|+++++++ +|+++++.+.++.
T Consensus 45 ~~~~~G~~a~~~~--~~~~~~~P~~~G~i~---------d~~~~e~i~~~~~~~~l~~~~~~~----~vll~~p~~~~~~ 109 (373)
T smart00268 45 KDTFVGDEAQEKR--GGLELKYPIEHGIVE---------NWDDMEKIWDYTFFNELRVEPEEH----PVLLTEPPMNPKS 109 (373)
T ss_pred cceEecchhhhcC--CCceecCCCcCCEEe---------CHHHHHHHHHHHHhhhcCCCCccC----eeEEecCCCCCHH
Confidence 4578999996543 456999999999998 999999999999988899988777 6888888877655
Q ss_pred HH-HHHHHHHHhcCCCeEEEeehhhHHhhhcCCceEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHH
Q 007655 252 IK-EMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (594)
Q Consensus 252 vr-~l~ellfE~~~f~~v~~~~esvla~ygaG~stg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit~~l~~lL~ 330 (594)
.| +++++|||.|+|++++++.+++||+||+|.++|||||||++.|+|+||+||+++.+++.++++||+++|++|.++|+
T Consensus 110 ~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~ 189 (373)
T smart00268 110 NREKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRDLTDYLKELLS 189 (373)
T ss_pred HHHHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEEEEECCEEchhhheeccCcHHHHHHHHHHHHH
Confidence 55 59999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hcCCCCCcccccccchhhHHHHHHHHHhcccccCCccccceeeecccCC-CCCC-CceeEeeeeccCCCcCCCCcccCCC
Q 007655 331 HHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDG-MPPG-SHKTRLIALNVPPMGLFYPKLLVPD 408 (594)
Q Consensus 331 ~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~-~p~~-~~k~~~~~~~~aP~~lf~p~~~~~e 408 (594)
..+. .++...+..+++++|+++|+++.+.... ....... .+.. ...+
T Consensus 190 ~~~~-------~~~~~~~~~~~~~iKe~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~--------------------- 238 (373)
T smart00268 190 ERGY-------QFNSSAEFEIVREIKEKLCYVAEDFEKE---MKKARESSESSKLEKTY--------------------- 238 (373)
T ss_pred hcCC-------CCCcHHHHHHHHHhhhheeeecCChHHH---HHHhhhcccccccceeE---------------------
Confidence 6431 2233457789999999999998631100 0000000 0000 0000
Q ss_pred CCCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhccCCh
Q 007655 409 VYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRI 486 (594)
Q Consensus 409 ~~~~p~~~~~~~~ed~~~d~~~~~~~-~r~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~~sI~~~~~~ 486 (594)
.++|+..+.++ +|+.++|.|| |+..+ .+..+|+++|.++|.+| |.
T Consensus 239 ---------------~lpdg~~~~~~~er~~~~E~lf~p~~~~-----------------~~~~~i~~~i~~~i~~~-~~ 285 (373)
T smart00268 239 ---------------ELPDGNTIKVGNERFRIPEILFKPELIG-----------------LEQKGIHELVYESIQKC-DI 285 (373)
T ss_pred ---------------ECCCCCEEEEChHHeeCchhcCCchhcC-----------------CCcCCHHHHHHHHHHhC-CH
Confidence 12233333333 6889999999 54433 34569999999999999 89
Q ss_pred hHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeecccCCccccceeHHHHH
Q 007655 487 DLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWI 566 (594)
Q Consensus 487 d~r~~L~~nIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla~L~sf~~~wITr~eye 566 (594)
|+|++|++||+|+||+|++|||.+||++||..+.|... +|++.. ..+|.+++|+||||+|++++|+++||||+||+
T Consensus 286 d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~---~v~v~~-~~~~~~~~W~G~silas~~~f~~~~vtk~eY~ 361 (373)
T smart00268 286 DVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKL---KVKVIA-PPERKYSVWLGGSILASLSTFEDMWITKKEYE 361 (373)
T ss_pred hHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCc---eeEEec-CCCCccceEeCcccccCccchhhhEEEHHHHh
Confidence 99999999999999999999999999999999998654 456664 35788999999999999999999999999999
Q ss_pred HcCCCeeeeccc
Q 007655 567 RNGIHIGSGRKY 578 (594)
Q Consensus 567 e~G~~il~~K~~ 578 (594)
|+|.++++||||
T Consensus 362 E~G~~i~~~k~~ 373 (373)
T smart00268 362 EHGSQIVERKCF 373 (373)
T ss_pred hhCcceEEeecC
Confidence 999999999997
No 12
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=3.6e-59 Score=498.87 Aligned_cols=325 Identities=24% Similarity=0.397 Sum_probs=265.0
Q ss_pred CceEEccccccCCCCCCceEEcceecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHH
Q 007655 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (594)
Q Consensus 172 ~~~~vGdeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~ 251 (594)
+.+++|++|...... ++.+++|+++|.+. ||++++.+|+|+|.+.|.++++++ +|+++++.+.++.
T Consensus 44 ~~~~~G~~a~~~~~~-~~~~~~P~~~G~i~---------d~~~~e~~~~~~~~~~l~~~~~~~----~vvl~~p~~~~~~ 109 (371)
T cd00012 44 KDYFVGEEALEKRGL-GLELIYPIEHGIVV---------DWDDMEKIWDHLFFNELKVNPEEH----PVLLTEPPLNPKS 109 (371)
T ss_pred CceEEchhhhhCCCC-ceEEcccccCCEEe---------CHHHHHHHHHHHHHHhcCCCCCCC----ceEEecCCCCCHH
Confidence 467899999887643 69999999999998 999999999999988888887776 5777777776655
Q ss_pred HH-HHHHHHHHhcCCCeEEEeehhhHHhhhcCCceEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHH
Q 007655 252 IK-EMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (594)
Q Consensus 252 vr-~l~ellfE~~~f~~v~~~~esvla~ygaG~stg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit~~l~~lL~ 330 (594)
.| +++++|||.++|++++++.+++||+|++|.++|||||||++.|+|+||+||+++.+++.++++||+++|++|.++|+
T Consensus 110 ~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~ 189 (371)
T cd00012 110 NREKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAGRDLTRYLKELLR 189 (371)
T ss_pred HHHHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEEEEEECCEEchhhheeccccHHHHHHHHHHHHH
Confidence 55 59999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hcCCCCCcccccccchhhHHHHHHHHHhcccccCCccccceeeecccCCCCCCCceeEeeeeccCCCcCCCCcccCCCCC
Q 007655 331 HHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVY 410 (594)
Q Consensus 331 ~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~~~~~e~~ 410 (594)
.++. .+....+..+++++||++|+++.+...... . ... ...... ..
T Consensus 190 ~~~~-------~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~--~-~~~-~~~~~~-~~---------------------- 235 (371)
T cd00012 190 ERGY-------ELNSSDEREIVRDIKEKLCYVALDIEEEQD--K-SAK-ETSLLE-KT---------------------- 235 (371)
T ss_pred hcCC-------CccchhHHHHHHHHHHhheeecCCHHHHHH--h-hhc-cCCccc-ee----------------------
Confidence 6542 234456788999999999999864211000 0 000 000000 00
Q ss_pred CCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhccCChhH
Q 007655 411 PPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDL 488 (594)
Q Consensus 411 ~~p~~~~~~~~ed~~~d~~~~~~~-~r~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~~sI~~~~~~d~ 488 (594)
-.++|+..+.++ +|+.++|.|| |...+ ....+|+++|.++|..| +.|.
T Consensus 236 ------------~~lpd~~~i~~~~er~~~~E~lF~p~~~~-----------------~~~~~i~~~i~~~i~~~-~~~~ 285 (371)
T cd00012 236 ------------YELPDGRTIKVGNERFRAPEILFNPSLIG-----------------SEQVGISEAIYSSINKC-DIDL 285 (371)
T ss_pred ------------EECCCCeEEEEChHHhhChHhcCChhhcC-----------------CCcCCHHHHHHHHHHhC-CHhH
Confidence 012233333333 6889999999 54433 24679999999999999 8999
Q ss_pred HHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeecccCCccccceeHHHHHHc
Q 007655 489 QRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRN 568 (594)
Q Consensus 489 r~~L~~nIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla~L~sf~~~wITr~eyee~ 568 (594)
|+.+++||+|+||+|++|||.+||++||..+.|.. +...+.+.. ..+|.+++|+|||++|++++|+++||||+||+|+
T Consensus 286 ~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~-~~~~~~~~~-~~~~~~~aw~G~si~as~~~~~~~~itk~eY~E~ 363 (371)
T cd00012 286 RKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPS-KDTKVKVIA-PPERKYSVWLGGSILASLSTFQQLWITKEEYEEH 363 (371)
T ss_pred HHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcc-cceEEEEcc-CCCccccEEeCchhhcCchhhhheEeeHHHHhhh
Confidence 99999999999999999999999999999998863 112355553 4689999999999999999999999999999999
Q ss_pred CCCeeeec
Q 007655 569 GIHIGSGR 576 (594)
Q Consensus 569 G~~il~~K 576 (594)
|.++++||
T Consensus 364 G~~~~~~k 371 (371)
T cd00012 364 GPSIVHRK 371 (371)
T ss_pred CchhEecC
Confidence 99999886
No 13
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=1.3e-58 Score=496.68 Aligned_cols=359 Identities=22% Similarity=0.359 Sum_probs=277.7
Q ss_pred CceEEccccccCCCCCCceEEcceecCeeeecCCCChhhcHHHHHHHHHHHHhh--hcCCCCCCCcccceeeecCCCCCh
Q 007655 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTE--KLHIPRSERNLYSAILVLPESFDN 249 (594)
Q Consensus 172 ~~~~vGdeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~iw~~~l~~--~L~i~~~d~~~y~~VLvip~~~~~ 249 (594)
++.++|+++....+.+.+.+++|+++|.+. +|++++.+|+|+|.+ .+..++.++ ++++++++++.
T Consensus 52 ~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~---------~W~~~e~~w~~~~~~~~~~~~~~~~~----pllltep~~n~ 118 (444)
T COG5277 52 KDTYVGNEAQNDRDNSLLELRYPIENGIIL---------NWDAMEQIWDYTFFNKGDLLPSPEEH----PLLLTEPPLNP 118 (444)
T ss_pred cccccCchhhhccCCccceeecccccCccC---------CcHHHHHHHHHhhcchhhccCCCcCC----ceEEeccCCCc
Confidence 456799998876655689999999999998 999999999999988 577788888 79999999998
Q ss_pred HHHHH-HHHHHHHhcCCCeEEEeehhhHHhhhcCCc--eEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHHHHHH
Q 007655 250 REIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLS--TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLL 326 (594)
Q Consensus 250 ~~vr~-l~ellfE~~~f~~v~~~~esvla~ygaG~s--tg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit~~l~ 326 (594)
.+.|+ +++++||+|+|+++++..+++|++|+.|.+ +|||||+|++.|+|+||+||+++.+++.++++||+++|.+|.
T Consensus 119 ~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~ 198 (444)
T COG5277 119 PSNREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVIDSGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLK 198 (444)
T ss_pred HHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEEcCCCceeeEeeeccccccccceeeecCcHHHHHHHH
Confidence 88885 999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcccccccch---hhHHHHHHHHHhcc-------cccCCccccceeeecccCCCCCCCceeEeeeeccCC
Q 007655 327 WTQRHHQTWPQIRTDILTKA---MDLLMLNRIKESYC-------EIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPP 396 (594)
Q Consensus 327 ~lL~~~~~~p~~~~~~l~~~---~d~~l~e~lKe~~c-------~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP 396 (594)
++|..... +.+.+.+... .++++++.+|+++| |+..+-. ...+... ..+ ..+. .
T Consensus 199 ~lL~~~~~--~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~~~~~~---~~~~e~~-~~~--~~~~--------~ 262 (444)
T COG5277 199 KLLREKYP--PSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYVSLDAE---EEFEEEE-EKP--AEKS--------T 262 (444)
T ss_pred HHHhhccc--ccCCcccccccccccHHHHHHHHHhhccccccccchhhcch---HHHHHHh-hhh--hhhc--------c
Confidence 99987532 3345556655 78999999999999 4432100 0000000 000 0000 0
Q ss_pred CcCCCCc---ccCCCCCCCCCCCCCCCccccccCCccccCC-C-CCCCCCCCC-CC--CCCCCCCCCC-----------C
Q 007655 397 MGLFYPK---LLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-R-RSDISDNFY-PG--INVGLPMWES-----------Y 457 (594)
Q Consensus 397 ~~lf~p~---~~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~-~-r~~~~E~lf-p~--~~~~~~~~~~-----------~ 457 (594)
...|.+. ....+ ....+++..+.+. + ||.+||.+| |. ..+ +..... .
T Consensus 263 ~~~~~~~~~~~~~~~-------------~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~-l~~~~~~~~~~~~~~~~~ 328 (444)
T COG5277 263 ESTFQLSKETSIAKE-------------SKELPDGEEIEFGNEERFKAPEILFKPELPISG-LEEAGKIDESKQELVAEN 328 (444)
T ss_pred cccccccchhccccc-------------cccCCCCceEeechhhhhhcchhhcCCcccccc-ccccccchhhhhhhhhhc
Confidence 0000000 00000 0123344555554 5 999999999 54 221 110000 0
Q ss_pred CccCCCCCcccCCCHHHHHHHHHhccCChhHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCC
Q 007655 458 PVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTN 537 (594)
Q Consensus 458 ~~~~~~~~~~~~~~L~~~I~~sI~~~~~~d~r~~L~~nIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~~~~V~v~~~~~d 537 (594)
....+........||+++|.+||..| +.|.|+.||+||+|+||+|++|||.+||+.||..+.|... .|.|.+. .|
T Consensus 329 ~~~~~~~~~~~~~gl~e~v~~si~~~-~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~---~v~v~~~-~~ 403 (444)
T COG5277 329 YEISPTNLGNDIAGLPELVYQSIQIC-DEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIW---KVSVIPP-PD 403 (444)
T ss_pred cccccccccccccchHHHHHHHHHhc-cHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCC---ceeeecC-Cc
Confidence 00111122245679999999999999 8999999999999999999999999999999999998743 5688764 59
Q ss_pred CceeEEeceeeecccCCccccceeHHHHHHcCCCeeeeccc
Q 007655 538 PTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKY 578 (594)
Q Consensus 538 p~~~aW~GgSIla~L~sf~~~wITr~eyee~G~~il~~K~~ 578 (594)
|.+.+|+||||||++++|+.+||||+||+|+|++++++|++
T Consensus 404 ~~~~~W~GaSila~~~~~~~~~itk~eY~e~G~~~~~~~~~ 444 (444)
T COG5277 404 PSLDAWLGASILASLETFQQLWITKEEYEEHGPDILQEKRF 444 (444)
T ss_pred hhhccccchhhhccccchhheEeeHHHhhhhhhHHHhhccC
Confidence 99999999999999999999999999999999999998875
No 14
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=5.2e-54 Score=423.57 Aligned_cols=333 Identities=20% Similarity=0.300 Sum_probs=264.7
Q ss_pred eEEccccccCCCCCCceEEcceecCeeeecCCCChhhcHHHHHHHHHHHHhhh-cCCCCCCCcccceeeecCCCCChHHH
Q 007655 174 FICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEK-LHIPRSERNLYSAILVLPESFDNREI 252 (594)
Q Consensus 174 ~~vGdeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~iw~~~l~~~-L~i~~~d~~~y~~VLvip~~~~~~~v 252 (594)
.|+|++.-.+.+...+..+.|+++|.+. +|+-...+|+++|.+. ++++.+++ .++++++.++-..+
T Consensus 42 ~f~~nei~ec~D~ssL~y~rp~erGyLv---------nW~tq~~vWDy~f~~~~~~~~~~~~----~ivlTep~~~~psi 108 (400)
T KOG0680|consen 42 SFLANEIDECKDISSLFYRRPHERGYLV---------NWDTQSQVWDYCFGNPGFDVEGKDH----NIVLTEPCMTFPSI 108 (400)
T ss_pred hhhhhhhhhccCccceEEeehhhcceeE---------eehhHHHHHHHHhcCCCcCcccCcc----eEEEecccccccch
Confidence 3455555555555677889999999999 9999999999999642 34555666 58889998887777
Q ss_pred HH-HHHHHHHhcCCCeEEEeehhhHHhhh---cCC--------ceEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHH
Q 007655 253 KE-MLSIVLRDLRFASAVVHQEGLAAVFG---NGL--------STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGED 320 (594)
Q Consensus 253 r~-l~ellfE~~~f~~v~~~~esvla~yg---aG~--------stg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~d 320 (594)
.+ +.|+|||+|+|.+++=...+.+++|- .+. .+++|||+|++.|+|+||.+|+....+++|+++||+.
T Consensus 109 ~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~ 188 (400)
T KOG0680|consen 109 QEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKA 188 (400)
T ss_pred hhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhhcCcchhhceEEeecchHH
Confidence 76 99999999999999999999998876 221 2689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHhcccccCC---ccccc-------eeeecccCCCCCCCceeEee
Q 007655 321 ISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEG---EIDAV-------AVVHSYEDGMPPGSHKTRLI 390 (594)
Q Consensus 321 it~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~---~~~~~-------~~~~~~~~~~p~~~~k~~~~ 390 (594)
+|.+|++.+..++ ++.+.+..+++++||.+|||+++ +++.. .....|. +||-+.. +
T Consensus 189 LTn~LKE~iSyR~---------lNvmdET~vVNeiKEdvcfVSqnF~~~m~~~~~k~~~~~~~i~Yv--LPDF~T~---k 254 (400)
T KOG0680|consen 189 LTNLLKETISYRH---------LNVMDETYVVNEIKEDVCFVSQNFKEDMDIAKTKFQENKVMIDYV--LPDFSTS---K 254 (400)
T ss_pred HHHHHHHHhhhhh---------hcccchhhhhhhhhhheEEechhhHHHHHHHhhccccceeEEEEe--cCCcccc---c
Confidence 9999999987553 45566788999999999999973 22110 0111222 3331100 0
Q ss_pred eeccCCCcCCCCcccCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCccc
Q 007655 391 ALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEE 468 (594)
Q Consensus 391 ~~~~aP~~lf~p~~~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~-~r~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~ 468 (594)
..++-+ +.-+ ...|.+.+.++ |||.+||.|| |+.++ ..
T Consensus 255 ~Gyvr~-----------~~vk------------~~~d~qii~L~nErF~IPEilF~Psdi~-----------------I~ 294 (400)
T KOG0680|consen 255 RGYVRN-----------EDVK------------LPEDEQIITLTNERFTIPEILFSPSDIG-----------------IQ 294 (400)
T ss_pred ceeEec-----------CCCC------------CCCCcceeeecccccccchhhcChhhcC-----------------cc
Confidence 001111 0000 11233444444 8999999999 77665 57
Q ss_pred CCCHHHHHHHHHhccCChhHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceee
Q 007655 469 KIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAV 548 (594)
Q Consensus 469 ~~~L~~~I~~sI~~~~~~d~r~~L~~nIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSI 548 (594)
..||++||++||..| |.++|+.|+.||+++||++++|||.+||..||++++|..+ .|+|.. +.||..-+|.||+-
T Consensus 295 q~GIpEAV~esl~~~-Pe~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~---~v~V~~-p~dp~~~~W~~g~~ 369 (400)
T KOG0680|consen 295 QPGIPEAVLESLSML-PEEVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADW---EVSVSV-PEDPITFAWEGGSE 369 (400)
T ss_pred cCCchHHHHHHHHhC-HHHHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccc---eEEEec-CCCcceeeehhccc
Confidence 889999999999999 9999999999999999999999999999999999999987 456665 47999999999999
Q ss_pred ecccCCccccceeHHHHHHcCCCeeeeccc
Q 007655 549 LGILDFGRDAWIHREDWIRNGIHIGSGRKY 578 (594)
Q Consensus 549 la~L~sf~~~wITr~eyee~G~~il~~K~~ 578 (594)
++.+++|+.+||||+||+|+|.+++.+|++
T Consensus 370 ~~~~~~~~~~~itR~dy~E~G~~~~~~~~~ 399 (400)
T KOG0680|consen 370 FAKTDSFEKAVITREDYEEHGPSWCTKKRF 399 (400)
T ss_pred cccCcchhcceecHhhHhhcCchhhhhhcc
Confidence 999999999999999999999999998875
No 15
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=3.5e-43 Score=347.34 Aligned_cols=328 Identities=22% Similarity=0.302 Sum_probs=254.2
Q ss_pred CceEEccccccCCCCCCceEEcceecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHH
Q 007655 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (594)
Q Consensus 172 ~~~~vGdeAl~~~~~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~ 251 (594)
-++++|+||+. ...|.|.|||+||.+. +||.||++|+..+.+.|..+|+|+ -.|+++++.++.+
T Consensus 57 ldf~ig~eal~---~~~ysl~ypiRhg~ve---------~wd~mer~~~q~ifkylr~ePedh----~fLlteppln~pe 120 (415)
T KOG0678|consen 57 LDFFIGDEALD---ATTYSLKYPIRHGQVE---------DWDLMERFWEQCIFKYLRAEPEDH----YFLLTEPPLNQPE 120 (415)
T ss_pred cceecccHHHh---hcccccccceeccccc---------cHHHHHHHHhhhhhhhhcCCcccc----eEEecCCCCCCch
Confidence 46899999998 3589999999999998 999999999999999999999999 4899999999999
Q ss_pred HHH-HHHHHHHhcCCCeEEEeehhhHHhhhc--------CCceEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHH
Q 007655 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGN--------GLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDIS 322 (594)
Q Consensus 252 vr~-l~ellfE~~~f~~v~~~~esvla~yga--------G~stg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit 322 (594)
.|+ +.+++||.|+++.+|++-++++|+-+. -.-||+|||.|.+.|+|.||.||+|+..++..++++|+|+|
T Consensus 121 nreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~ltG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT 200 (415)
T KOG0678|consen 121 NREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT 200 (415)
T ss_pred hhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhheeeeEEEecCCCeeEEEEeecceEEeeeeccccccCCchh
Confidence 887 999999999999999999999997543 13489999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHhcccccCCccccceeeecccCCCCCCCceeEeeeeccCCCcCCCC
Q 007655 323 RCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYP 402 (594)
Q Consensus 323 ~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p 402 (594)
.++.+||+.++.+++. ...++.++.+||++||+.++-+. .+..|..+ |..-.|+ ....++
T Consensus 201 ~fiQ~llRer~~~iP~-------e~sl~tak~iKe~ycy~cPdivk---ef~k~d~e-p~K~ikq-~~~~~~-------- 260 (415)
T KOG0678|consen 201 YFIQQLLREREVGIPP-------EQSLETAKAIKEKYCYTCPDIVK---EFAKYDRE-PAKWIKQ-YTGINV-------- 260 (415)
T ss_pred HHHHHHhhCCCCCCCh-------HHhhhhhHHHHhhhcccCcHHHH---HHHHhccC-HHHHHHH-Hhccch--------
Confidence 9999999877654321 23568899999999999875221 12222211 1110000 000000
Q ss_pred cccCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHH
Q 007655 403 KLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSI 480 (594)
Q Consensus 403 ~~~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~-~r~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~~sI 480 (594)
+.. ....++.+ +||-.+|.+| |....+ .-..+|++.|-..|
T Consensus 261 --i~~-------------------~~~~vDvgyerFlgpEiff~Pe~a~~----------------d~~~~~~~~vd~~I 303 (415)
T KOG0678|consen 261 --ITG-------------------KKFVVDVGYERFLGPEIFFHPEFANP----------------DFLTPLSEVVDWVI 303 (415)
T ss_pred --hcC-------------------CceeecccHHhhcChhhhcCccccCC----------------ccCcchHHHhhhhh
Confidence 000 00112222 4777777777 432110 12457999999999
Q ss_pred hccCChhHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCC----C-----CCc--ceEEEcCCCCCCceeEEeceeee
Q 007655 481 LSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPS----N-----EAI--DMVEVLQSRTNPTYVSWKGGAVL 549 (594)
Q Consensus 481 ~~~~~~d~r~~L~~nIvL~GG~S~ipGf~eRL~~eL~~~~p~----~-----~~~--~~V~v~~~~~dp~~~aW~GgSIl 549 (594)
++| ++|.||-||+||++.||.+++.+|..||+++++.+... + .+. -.|+++. ..-.++++|-|||+|
T Consensus 304 q~~-pIdvrr~ly~nivlsggst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvis-h~~qr~avwfggs~l 381 (415)
T KOG0678|consen 304 QHC-PIDVRRPLYKNIVLSGGSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLS-HLLQRTAVWFGGSKL 381 (415)
T ss_pred hhC-CcccchhhhhHHhhccchHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhh-hhhhhcceeccCccc
Confidence 999 99999999999999999999999999999998764211 0 010 1366664 334568999999999
Q ss_pred cccCCccccceeHHHHHHcCCCeee
Q 007655 550 GILDFGRDAWIHREDWIRNGIHIGS 574 (594)
Q Consensus 550 a~L~sf~~~wITr~eyee~G~~il~ 574 (594)
|+-+.|-..+=||++|+|+|++|++
T Consensus 382 astpef~~~~~tk~~yee~g~si~r 406 (415)
T KOG0678|consen 382 ASTPEFVPACHTKEDYEEYGPSICR 406 (415)
T ss_pred cCCcccccccCcchhhhhhChhhhh
Confidence 9999999999999999999999995
No 16
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=3.5e-38 Score=329.42 Aligned_cols=352 Identities=20% Similarity=0.284 Sum_probs=253.2
Q ss_pred CceEEcceecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHHH-HHHHHHHhcCCC
Q 007655 188 PYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKE-MLSIVLRDLRFA 266 (594)
Q Consensus 188 ~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~vr~-l~ellfE~~~f~ 266 (594)
....+.||.+..+. +|+.+|.|++|+| .+||+++++ ..+|+++|+.++++.+.|. |.++|||.+|||
T Consensus 79 Rs~~rSPFd~nVvt---------Nwel~E~ilDY~F-~~LG~~~~~--idhPIilTE~laNP~~~R~~m~elLFE~YgvP 146 (645)
T KOG0681|consen 79 RSSPRSPFDRNVVT---------NWELMEQILDYIF-GKLGVDGQG--IDHPIILTEALANPVYSRSEMVELLFETYGVP 146 (645)
T ss_pred hccCCCCCcCCccc---------cHHHHHHHHHHHH-HhcCCCccC--CCCCeeeehhccChHHHHHHHHHHHHHHcCCc
Confidence 35578899998887 9999999999999 689998865 3348999999999999985 999999999999
Q ss_pred eEEEeehhhHHhhh-cCCc---eEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHHhcCCCCCccccc
Q 007655 267 SAVVHQEGLAAVFG-NGLS---TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDI 342 (594)
Q Consensus 267 ~v~~~~esvla~yg-aG~s---tg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit~~l~~lL~~~~~~p~~~~~~ 342 (594)
+|.+.-.++.|+|- .+.+ +|+||++|++.|+|.||.||..+-..+.|+++||..++.||..||+.+- |.
T Consensus 147 ~V~yGIDslfS~~hN~~~~~~~~~liis~g~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Ky--p~----- 219 (645)
T KOG0681|consen 147 KVAYGIDSLFSFYHNYGKSSNKSGLIISMGHSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKY--PF----- 219 (645)
T ss_pred ceeechhhHHHHhhccCcccCcceEEEecCCCcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhccC--cc-----
Confidence 99999999999993 3433 6999999999999999999999999999999999999999999998752 22
Q ss_pred ccchhhHHHHHHHHHhcccccCCc---ccc-----------ceeeecccC---C----CCCCC-ceeE------ee----
Q 007655 343 LTKAMDLLMLNRIKESYCEIKEGE---IDA-----------VAVVHSYED---G----MPPGS-HKTR------LI---- 390 (594)
Q Consensus 343 l~~~~d~~l~e~lKe~~c~v~~~~---~~~-----------~~~~~~~~~---~----~p~~~-~k~~------~~---- 390 (594)
+.+..++.-++.++..+||++.+- +.. ......|.. + ++... .+-+ ++
T Consensus 220 ~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~~d~~d~~~~~~qlP~~evl~~~e~~l~Ae~kqekRlq~~a~lkrv~k 299 (645)
T KOG0681|consen 220 HLNAFTGSKAERLLHEHCYISPDYREEIIKILEMDYYDENRNYFQLPYTEVLAEVELALTAEKKQEKRLQEQAALKRVEK 299 (645)
T ss_pred chhhcCHHHHHHHhhhhceeCcchHHHHHHHhhhhhhhccceEEecccccccchhhhhccHHHHHHHHHHHHHHHhhHHH
Confidence 123467889999999999998641 100 000000100 0 00000 0000 00
Q ss_pred --ee----------------ccCCC---c-------CCCCcccCCCC----------------------------C---C
Q 007655 391 --AL----------------NVPPM---G-------LFYPKLLVPDV----------------------------Y---P 411 (594)
Q Consensus 391 --~~----------------~~aP~---~-------lf~p~~~~~e~----------------------------~---~ 411 (594)
+. ..-+. . +.-|..++.+. . .
T Consensus 300 ~~~re~~redeqql~~~~kaq~e~e~~~D~~q~~~ll~v~~eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~~k~~ 379 (645)
T KOG0681|consen 300 INARENRREDEQQLESYNKAQGEQESNLDLEQKFPLLNVPAELDEDQLKEKKKQRILKASTDARLRARVEKELERLNKLE 379 (645)
T ss_pred HHHHHhhhhhHHHHHHHHHhhhchhcCccHhhhchhhcchhhhCHHHHHHHHHHHHHHhhhhhhccccccchHHHhhccc
Confidence 00 00000 0 00000111000 0 0
Q ss_pred CCCC----CCCC--------------------------------------------------------C-----------
Q 007655 412 PPPR----SWFN--------------------------------------------------------D----------- 420 (594)
Q Consensus 412 ~p~~----~~~~--------------------------------------------------------~----------- 420 (594)
.+.+ +|.. |
T Consensus 380 ~~r~~~~~swl~e~r~k~~~ller~~~kk~lk~e~~~r~s~~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~v 459 (645)
T KOG0681|consen 380 EEREENLISWLEELREKLEKLLERISQKKRLKQELKDRKSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDV 459 (645)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHHH
Confidence 0000 0000 0
Q ss_pred ccc-------ccc------------------------CCcc------------ccCC-CCCCCCCCCC-CCCCCCCCCCC
Q 007655 421 YED-------MLE------------------------DTWH------------TDFP-RRSDISDNFY-PGINVGLPMWE 455 (594)
Q Consensus 421 ~ed-------~~~------------------------d~~~------------~~~~-~r~~~~E~lf-p~~~~~~~~~~ 455 (594)
|++ .+. |+.+ +.++ +|..+||.+| |+.+|
T Consensus 460 Ye~lee~~~~~~~dl~~l~~~L~e~Dp~F~~~~~~~~d~~~~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG------ 533 (645)
T KOG0681|consen 460 YEDLEEENKSILEDLKSLNHELLEFDPHFTQYVEGTTDPRNGVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIG------ 533 (645)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHhhCcccccccccccCcccCcchhHHHhhhhhhhcceeeccceeeecccccc------
Confidence 000 000 0000 0022 5778888888 66665
Q ss_pred CCCccCCCCCcccCCCHHHHHHHHHhccCChhHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCC
Q 007655 456 SYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSR 535 (594)
Q Consensus 456 ~~~~~~~~~~~~~~~~L~~~I~~sI~~~~~~d~r~~L~~nIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~~~~V~v~~~~ 535 (594)
.+.+||.+++-..+.+. +.|.+.+|.+||+||||.|++||+.+||+.||....|... +|+|.- .
T Consensus 534 -----------~dQaGl~Ei~~~il~r~-p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS---~i~V~r-a 597 (645)
T KOG0681|consen 534 -----------IDQAGLAEIMDTILRRY-PHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGS---SINVVR-A 597 (645)
T ss_pred -----------chhhhHHHHHHHHHHhC-chhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCC---ceEEEe-c
Confidence 67899999999999998 8999999999999999999999999999999999999875 457664 4
Q ss_pred CCCceeEEeceeeecccCCccccceeHHHHHHcCCCeeeecccCC
Q 007655 536 TNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKD 580 (594)
Q Consensus 536 ~dp~~~aW~GgSIla~L~sf~~~wITr~eyee~G~~il~~K~~~~ 580 (594)
.||...+|+|||.+|.-.+|..-||||+||+|.|...+.+-+..-
T Consensus 598 sdP~LDAW~GA~~~a~n~~f~~~~~Tr~dy~E~G~e~~kEh~~~n 642 (645)
T KOG0681|consen 598 SDPVLDAWRGASAWAANPTFTLTQITRKDYEEKGEEYLKEHVASN 642 (645)
T ss_pred CCcchhhhhhhHHhhcCcccchhhhhHHhhhhhhHHHHHHHhhcc
Confidence 799999999999999999999999999999999998887655443
No 17
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.97 E-value=2.9e-29 Score=264.51 Aligned_cols=270 Identities=19% Similarity=0.209 Sum_probs=194.4
Q ss_pred ceEEccccccCCC--CCCceEEcceecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChH
Q 007655 173 EFICGEEALRVSP--TEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNR 250 (594)
Q Consensus 173 ~~~vGdeAl~~~~--~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~ 250 (594)
.+++|++|.+... ..++.+.+||++|.+. +|+.++.+|+++|.+.+.. ..+++ .++++.|.+.+.
T Consensus 43 ~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~---------d~~~~~~ll~~~~~~~~~~-~~~~~---~~vi~vP~~~~~ 109 (334)
T PRK13927 43 VLAVGEEAKQMLGRTPGNIVAIRPMKDGVIA---------DFDVTEKMLKYFIKKVHKN-FRPSP---RVVICVPSGITE 109 (334)
T ss_pred EEEecHHHHHHhhcCCCCEEEEecCCCCeec---------CHHHHHHHHHHHHHHHhhc-cCCCC---cEEEEeCCCCCH
Confidence 3679999977531 2578899999999998 9999999999999877766 44443 466666666556
Q ss_pred HHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEe-eCCeeccCCcEEecchHHHHHHH
Q 007655 251 EIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICV-EDGVALPNTEKTLPFGGEDISRC 324 (594)
Q Consensus 251 ~vr~l~ellfE~~~f~~v~~~~esvla~ygaG~-----stg~VVDiG~~~TsV~pV-~dG~vl~~s~~~l~~GG~dit~~ 324 (594)
..|++++.+|+.+|++.++++.+++||+|++|. ..++|||+|+++|+|++| ++|++...+ .++||+++|+.
T Consensus 110 ~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs~v~~~~~~~~~~---~~lGG~~id~~ 186 (334)
T PRK13927 110 VERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGGIVYSKS---VRVGGDKFDEA 186 (334)
T ss_pred HHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEecCCeEeeCC---cCChHHHHHHH
Confidence 656799999999999999999999999999997 457999999999999999 788887655 47999999999
Q ss_pred HHHHHHhcCCCCCcccccccchhhHHHHHHHHHhcccccCCccccceeee--cccCCCCCCCceeEeeeeccCCCcCCCC
Q 007655 325 LLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVH--SYEDGMPPGSHKTRLIALNVPPMGLFYP 402 (594)
Q Consensus 325 l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~--~~~~~~p~~~~k~~~~~~~~aP~~lf~p 402 (594)
|.+++.... .+. .+...++++|+++|++..++-....... ....+.|.
T Consensus 187 l~~~l~~~~--------~~~--~~~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 236 (334)
T PRK13927 187 IINYVRRNY--------NLL--IGERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPK-------------------- 236 (334)
T ss_pred HHHHHHHHh--------CcC--cCHHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCe--------------------
Confidence 998876431 111 3456799999999987642100000000 00000000
Q ss_pred cccCCCCCCCCCCCCCCCccccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhc
Q 007655 403 KLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILS 482 (594)
Q Consensus 403 ~~~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~~r~~~~E~lfp~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~~sI~~ 482 (594)
.+.++ |....|.+++. ..++.++|.++|.+
T Consensus 237 ---------------------------~~~i~-~~~~~e~i~~~----------------------~~~i~~~i~~~l~~ 266 (334)
T PRK13927 237 ---------------------------TITIS-SNEIREALQEP----------------------LSAIVEAVKVALEQ 266 (334)
T ss_pred ---------------------------EEEEC-HHHHHHHHHHH----------------------HHHHHHHHHHHHHH
Confidence 00000 00111222221 23689999999999
Q ss_pred cCChhHHHHHhcC-eEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeecc
Q 007655 483 TGRIDLQRKLFCS-IQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGI 551 (594)
Q Consensus 483 ~~~~d~r~~L~~n-IvL~GG~S~ipGf~eRL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla~ 551 (594)
| +.+.+++++++ |+|+||+|++|||.+||++++.. +|.+. .+|..++=.||++++.
T Consensus 267 ~-~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~---------~v~~~---~~P~~ava~Ga~~~~~ 323 (334)
T PRK13927 267 T-PPELAADIVDRGIVLTGGGALLRGLDKLLSEETGL---------PVHVA---EDPLTCVARGTGKALE 323 (334)
T ss_pred C-CchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCC---------CcEec---CCHHHHHHHHHHHHHh
Confidence 8 78888999985 99999999999999999999842 23443 3566777788877753
No 18
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.97 E-value=3.2e-29 Score=264.30 Aligned_cols=272 Identities=18% Similarity=0.188 Sum_probs=194.1
Q ss_pred ceEEccccccCCC--CCCceEEcceecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChH
Q 007655 173 EFICGEEALRVSP--TEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNR 250 (594)
Q Consensus 173 ~~~vGdeAl~~~~--~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~ 250 (594)
.++||++|.+... ..++.+.+||++|.+. +|++++.+|+|+|.+.+...+.+.+ .++++.|.+.+.
T Consensus 46 ~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~---------d~~~~e~ll~~~~~~~~~~~~~~~~---~vvit~P~~~~~ 113 (335)
T PRK13930 46 VLAVGEEAKEMLGRTPGNIEAIRPLKDGVIA---------DFEATEAMLRYFIKKARGRRFFRKP---RIVICVPSGITE 113 (335)
T ss_pred EEEEcHHHHHhhhcCCCCeEEeecCCCCeEc---------CHHHHHHHHHHHHHHHhhcccCCCC---cEEEEECCCCCH
Confidence 4689999986532 2468899999999998 9999999999999544443333222 567777766666
Q ss_pred HHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHHHHH
Q 007655 251 EIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 325 (594)
Q Consensus 251 ~vr~l~ellfE~~~f~~v~~~~esvla~ygaG~-----stg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit~~l 325 (594)
..|+.+..+||.+|++.++++.+++||+|++|. .+++|||+|+++|+|++|.+|.++. ....++||+++|+.|
T Consensus 114 ~~r~~~~~~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~~--~~~~~lGG~~id~~l 191 (335)
T PRK13930 114 VERRAVREAAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIVY--SESIRVAGDEMDEAI 191 (335)
T ss_pred HHHHHHHHHHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEEe--ecCcCchhHHHHHHH
Confidence 667777668999999999999999999999998 4689999999999999999999875 356899999999999
Q ss_pred HHHHHhcCCCCCcccccccchhhHHHHHHHHHhcccccCCccccceeee--cccCCCCCCCceeEeeeeccCCCcCCCCc
Q 007655 326 LWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVH--SYEDGMPPGSHKTRLIALNVPPMGLFYPK 403 (594)
Q Consensus 326 ~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~--~~~~~~p~~~~k~~~~~~~~aP~~lf~p~ 403 (594)
.+++..+. .+. .+...++++|+++|++............ ....+.|.
T Consensus 192 ~~~l~~~~--------~~~--~~~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 240 (335)
T PRK13930 192 VQYVRRKY--------NLL--IGERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPK--------------------- 240 (335)
T ss_pred HHHHHHHh--------CCC--CCHHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCe---------------------
Confidence 99886541 111 3446799999999987653110000000 00000000
Q ss_pred ccCCCCCCCCCCCCCCCccccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhcc
Q 007655 404 LLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILST 483 (594)
Q Consensus 404 ~~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~~r~~~~E~lfp~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~~sI~~~ 483 (594)
.+.++ +....|.+++. ..++.+.|.++|.+|
T Consensus 241 --------------------------~~~i~-~~~~~e~i~~~----------------------~~~i~~~i~~~l~~~ 271 (335)
T PRK13930 241 --------------------------TIEIS-SEEVREALAEP----------------------LQQIVEAVKSVLEKT 271 (335)
T ss_pred --------------------------eEEEC-HHHHHHHHHHH----------------------HHHHHHHHHHHHHhC
Confidence 00000 00111223221 236899999999998
Q ss_pred CChhHHHHHhcC-eEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeecc
Q 007655 484 GRIDLQRKLFCS-IQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGI 551 (594)
Q Consensus 484 ~~~d~r~~L~~n-IvL~GG~S~ipGf~eRL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla~ 551 (594)
+.+.+.+++.| |+|+||+|++|||.+||++++.. ++.+. .+|..++=.||++++.
T Consensus 272 -~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~---------~v~~~---~~p~~ava~Ga~~~~~ 327 (335)
T PRK13930 272 -PPELAADIIDRGIVLTGGGALLRGLDKLLSEETGL---------PVHIA---EDPLTCVARGTGKALE 327 (335)
T ss_pred -CHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCC---------Cceec---CCHHHHHHHHHHHHHh
Confidence 88999999998 99999999999999999999862 22332 2455667778877763
No 19
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.94 E-value=2.1e-26 Score=242.67 Aligned_cols=271 Identities=18% Similarity=0.184 Sum_probs=195.9
Q ss_pred CceEEccccccCCC--CCCceEEcceecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCCh
Q 007655 172 REFICGEEALRVSP--TEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDN 249 (594)
Q Consensus 172 ~~~~vGdeAl~~~~--~~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~ 249 (594)
+-++||++|.+... ..++.+.+||++|.+. +|+.++.+|+|+|.+.+.......+ .++++.|.+.+
T Consensus 43 ~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~---------d~~~~~~~~~~~l~~~~~~~~~~~~---~~vitvP~~~~ 110 (333)
T TIGR00904 43 SILAVGHEAKEMLGKTPGNIVAIRPMKDGVIA---------DFEVTEKMIKYFIKQVHSRKSFFKP---RIVICVPSGIT 110 (333)
T ss_pred eEEEEhHHHHHhhhcCCCCEEEEecCCCCEEE---------cHHHHHHHHHHHHHHHhcccccCCC---cEEEEeCCCCC
Confidence 34789999988632 2589999999999998 9999999999999876654322222 46666666655
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEe-eCCeeccCCcEEecchHHHHHH
Q 007655 250 REIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICV-EDGVALPNTEKTLPFGGEDISR 323 (594)
Q Consensus 250 ~~vr~l~ellfE~~~f~~v~~~~esvla~ygaG~-----stg~VVDiG~~~TsV~pV-~dG~vl~~s~~~l~~GG~dit~ 323 (594)
...|+.++.+|+.+|++.++++.+++||+|++|. .+++|||+|+++|+|++| ++|+++..+ .++||+++|+
T Consensus 111 ~~~r~~~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v~~~~~~~~~~---~~lGG~did~ 187 (333)
T TIGR00904 111 PVERRAVKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIVVSRS---IRVGGDEFDE 187 (333)
T ss_pred HHHHHHHHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEEEeCCEEecCC---ccchHHHHHH
Confidence 5666778889999999999999999999999998 678999999999999999 888887654 4899999999
Q ss_pred HHHHHHHhcCCCCCcccccccchhhHHHHHHHHHhcccccCCccc-cceeee--cccCCCCCCCceeEeeeeccCCCcCC
Q 007655 324 CLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEID-AVAVVH--SYEDGMPPGSHKTRLIALNVPPMGLF 400 (594)
Q Consensus 324 ~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~-~~~~~~--~~~~~~p~~~~k~~~~~~~~aP~~lf 400 (594)
.|.+++.... .+ ..+...+|++|+++|++...... ...... ....++|+
T Consensus 188 ~l~~~l~~~~--------~~--~~~~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 239 (333)
T TIGR00904 188 AIINYIRRTY--------NL--LIGEQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPR------------------ 239 (333)
T ss_pred HHHHHHHHHh--------cc--cCCHHHHHHHHHHHhccccccccccceeecCccccCCCCe------------------
Confidence 9998875431 11 23456799999999987542100 000000 00000010
Q ss_pred CCcccCCCCCCCCCCCCCCCccccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHH
Q 007655 401 YPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSI 480 (594)
Q Consensus 401 ~p~~~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~~r~~~~E~lfp~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~~sI 480 (594)
+..+ + +..+.|.+|+. ..++.+.|.+++
T Consensus 240 ---------------------------~~~i--~-~~~~~e~i~~~----------------------~~~i~~~i~~~l 267 (333)
T TIGR00904 240 ---------------------------TIEI--T-SVEVREALQEP----------------------VNQIVEAVKRTL 267 (333)
T ss_pred ---------------------------EEEE--C-HHHHHHHHHHH----------------------HHHHHHHHHHHH
Confidence 0000 0 11122333321 236889999999
Q ss_pred hccCChhHHHHHhc-CeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeec
Q 007655 481 LSTGRIDLQRKLFC-SIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLG 550 (594)
Q Consensus 481 ~~~~~~d~r~~L~~-nIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla 550 (594)
.+| +.+.+.++++ +|+|+||+|++|||.+||++++.. +|.+. .+|..++=+||++++
T Consensus 268 ~~~-~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~---------~v~~~---~~P~~~va~Ga~~~~ 325 (333)
T TIGR00904 268 EKT-PPELAADIVERGIVLTGGGALLRNLDKLLSKETGL---------PVIVA---DDPLLCVAKGTGKAL 325 (333)
T ss_pred HhC-CchhhhhhccCCEEEECcccchhhHHHHHHHHHCC---------Cceec---CChHHHHHHHHHHHH
Confidence 998 8899999997 799999999999999999999952 22332 367778888988775
No 20
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.92 E-value=3.8e-24 Score=225.55 Aligned_cols=263 Identities=17% Similarity=0.216 Sum_probs=185.4
Q ss_pred eEEccccccCCCC--CCceEEcceecCeeeecCCCChhhcHHHHHHHHHHHHhh---hcCCCCCCCcccceeeecCCCC-
Q 007655 174 FICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTE---KLHIPRSERNLYSAILVLPESF- 247 (594)
Q Consensus 174 ~~vGdeAl~~~~~--~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~iw~~~l~~---~L~i~~~d~~~y~~VLvip~~~- 247 (594)
++||++|.....+ .+..+.+||++|.+. +|+.++.+|++++.+ .|+...... .++|+.|.+
T Consensus 43 ~~vG~~A~~~~~~~p~~~~~~~pi~~G~I~---------d~d~~~~~l~~~~~~~~~~l~~~~~~~----~vvitvP~~~ 109 (335)
T PRK13929 43 LAIGTEAKNMIGKTPGKIVAVRPMKDGVIA---------DYDMTTDLLKQIMKKAGKNIGMTFRKP----NVVVCTPSGS 109 (335)
T ss_pred EEeCHHHHHhhhcCCCcEEEEecCCCCccC---------CHHHHHHHHHHHHHHHHHhcCCCCCCC----eEEEEcCCCC
Confidence 6899999875422 578899999999997 999999999999973 566655433 466665555
Q ss_pred ChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcC-----CceEEEEEeCCCceEEEEe-eCCeeccCCcEEecchHHHH
Q 007655 248 DNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNG-----LSTACVVNMGAQVTSVICV-EDGVALPNTEKTLPFGGEDI 321 (594)
Q Consensus 248 ~~~~vr~l~ellfE~~~f~~v~~~~esvla~ygaG-----~stg~VVDiG~~~TsV~pV-~dG~vl~~s~~~l~~GG~di 321 (594)
+..+.+.+.+ +++.+|++.++++.+++||+|++| ..+++|||+|+++|++++| ++|++... .+++||+++
T Consensus 110 ~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~~~---~~~~GG~~i 185 (335)
T PRK13929 110 TAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVVSCH---SIRIGGDQL 185 (335)
T ss_pred CHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEEEec---CcCCHHHHH
Confidence 4444334666 999999999999999999999998 3578999999999999999 66766544 368999999
Q ss_pred HHHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHhcccccCCccccceeee--cccCCCCCCCceeEeeeeccCCCcC
Q 007655 322 SRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVH--SYEDGMPPGSHKTRLIALNVPPMGL 399 (594)
Q Consensus 322 t~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~--~~~~~~p~~~~k~~~~~~~~aP~~l 399 (594)
|+.|.+.+.... ++. .+...+|++|+++|++..+..+...... .+..++|. ...
T Consensus 186 d~~l~~~l~~~~--------~~~--~~~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~---~i~----------- 241 (335)
T PRK13929 186 DEDIVSFVRKKY--------NLL--IGERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPK---TIT----------- 241 (335)
T ss_pred HHHHHHHHHHHh--------CcC--cCHHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCe---EEE-----------
Confidence 999998876431 121 2456899999999987532110000000 00001110 000
Q ss_pred CCCcccCCCCCCCCCCCCCCCccccccCCccccCC-CCCC--CCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHH
Q 007655 400 FYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSD--ISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAV 476 (594)
Q Consensus 400 f~p~~~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~-~r~~--~~E~lfp~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I 476 (594)
++ +++. +.|. ...+.++|
T Consensus 242 ---------------------------------i~~~~~~~~i~~~--------------------------l~~i~~~i 262 (335)
T PRK13929 242 ---------------------------------LESKEIQGAMRES--------------------------LLHILEAI 262 (335)
T ss_pred ---------------------------------EcHHHHHHHHHHH--------------------------HHHHHHHH
Confidence 00 0000 0111 12488999
Q ss_pred HHHHhccCChhHHHHHhc-CeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeee
Q 007655 477 TSSILSTGRIDLQRKLFC-SIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVL 549 (594)
Q Consensus 477 ~~sI~~~~~~d~r~~L~~-nIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIl 549 (594)
.+++.+| +.+++.++++ +|+||||+|++|||.+||++++.. .|.+. .+|..++=+|+...
T Consensus 263 ~~~L~~~-~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~---------~v~~~---~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 263 RATLEDC-PPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVV---------PVHVA---ANPLESVAIGTGRS 323 (335)
T ss_pred HHHHHhC-CcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCC---------CceeC---CCHHHHHHHHHHHH
Confidence 9999999 8899999998 699999999999999999999952 22332 36667777775543
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.89 E-value=3.6e-23 Score=218.41 Aligned_cols=269 Identities=19% Similarity=0.210 Sum_probs=190.3
Q ss_pred eEEccccccCCCC--CCceEEcceecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCC-CCCCcccceeeecCCCCChH
Q 007655 174 FICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIP-RSERNLYSAILVLPESFDNR 250 (594)
Q Consensus 174 ~~vGdeAl~~~~~--~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~iw~~~l~~~L~i~-~~d~~~y~~VLvip~~~~~~ 250 (594)
+++|++|.++... .++.+.+||++|.+. +|+.++.+|+|++. ++... ..+.+ .++++.|.+...
T Consensus 42 ~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~---------d~~~~~~~l~~~~~-~~~~~~~~~~p---~~vitvP~~~~~ 108 (336)
T PRK13928 42 LAVGEEARRMVGRTPGNIVAIRPLRDGVIA---------DYDVTEKMLKYFIN-KACGKRFFSKP---RIMICIPTGITS 108 (336)
T ss_pred EEecHHHHHhhhcCCCCEEEEccCCCCeEe---------cHHHHHHHHHHHHH-HHhccCCCCCC---eEEEEeCCCCCH
Confidence 5899999887422 578889999999997 99999999999994 44433 23332 255555555445
Q ss_pred HHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHHHHH
Q 007655 251 EIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 325 (594)
Q Consensus 251 ~vr~l~ellfE~~~f~~v~~~~esvla~ygaG~-----stg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit~~l 325 (594)
..|+.++.+++.+|++.+.++.+++||+|++|. ..++|||+|+++|+|++|.+|.++... .+++||+++|+.|
T Consensus 109 ~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~~~~--~~~lGG~did~~i 186 (336)
T PRK13928 109 VEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIVTSS--SIKVAGDKFDEAI 186 (336)
T ss_pred HHHHHHHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEEEeC--CcCCHHHHHHHHH
Confidence 556799999999999999999999999999997 669999999999999999988776543 6899999999999
Q ss_pred HHHHHhcCCCCCcccccccchhhHHHHHHHHHhcccccCCccccceeee--cccCCCCCCCceeEeeeeccCCCcCCCCc
Q 007655 326 LWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVH--SYEDGMPPGSHKTRLIALNVPPMGLFYPK 403 (594)
Q Consensus 326 ~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~--~~~~~~p~~~~k~~~~~~~~aP~~lf~p~ 403 (594)
.+.+.... .+ ..+...+|++|+++|.+............ ....+.|.. ..
T Consensus 187 ~~~l~~~~--------~~--~~~~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~---~~--------------- 238 (336)
T PRK13928 187 IRYIRKKY--------KL--LIGERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKT---IT--------------- 238 (336)
T ss_pred HHHHHHHh--------ch--hcCHHHHHHHHHHhcccccccCCcEEEEecccccCCCceE---EE---------------
Confidence 98876431 11 13346799999999876432100000000 000000100 00
Q ss_pred ccCCCCCCCCCCCCCCCccccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhcc
Q 007655 404 LLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILST 483 (594)
Q Consensus 404 ~~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~~r~~~~E~lfp~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~~sI~~~ 483 (594)
+ + |....|.+++ -...+.+.|.+++.++
T Consensus 239 ---------------------------i--~-~~~~~eii~~----------------------~~~~i~~~i~~~l~~~ 266 (336)
T PRK13928 239 ---------------------------V--T-SEEIREALKE----------------------PVSAIVQAVKSVLERT 266 (336)
T ss_pred ---------------------------E--C-HHHHHHHHHH----------------------HHHHHHHHHHHHHHhC
Confidence 0 0 0000111111 1125788899999998
Q ss_pred CChhHHHHHhc-CeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeec
Q 007655 484 GRIDLQRKLFC-SIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLG 550 (594)
Q Consensus 484 ~~~d~r~~L~~-nIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla 550 (594)
+.+++.+++. +|+|+||+|++||+.++|++++.. +|.+. .+|..++=+||++++
T Consensus 267 -~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~---------~v~~~---~~P~~ava~Gaa~~~ 321 (336)
T PRK13928 267 -PPELSADIIDRGIIMTGGGALLHGLDKLLAEETKV---------PVYIA---EDPISCVALGTGKML 321 (336)
T ss_pred -CccccHhhcCCCEEEECcccchhhHHHHHHHHHCC---------Cceec---CCHHHHHHHHHHHHH
Confidence 7788888998 799999999999999999999963 22332 367788889988875
No 22
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.87 E-value=1.5e-21 Score=202.72 Aligned_cols=268 Identities=19% Similarity=0.298 Sum_probs=177.1
Q ss_pred eEEccccccCCCC--CCceEEcceecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeee-cCCCCChH
Q 007655 174 FICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILV-LPESFDNR 250 (594)
Q Consensus 174 ~~vGdeAl~~~~~--~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~iw~~~l~~~L~i~~~d~~~y~~VLv-ip~~~~~~ 250 (594)
+.+|++|..+-.+ .++.+.||+++|.+. |++..+.+++|.+++.++-..-..+ .|++ +|.-.+..
T Consensus 40 ~avG~~A~~m~gktp~~i~~~~Pl~~GvI~---------D~~~~~~~l~~~l~k~~~~~~~~~p---~vvi~vP~~~T~v 107 (326)
T PF06723_consen 40 LAVGDEAKAMLGKTPDNIEVVRPLKDGVIA---------DYEAAEEMLRYFLKKALGRRSFFRP---RVVICVPSGITEV 107 (326)
T ss_dssp EEESHHHHTTTTS-GTTEEEE-SEETTEES---------SHHHHHHHHHHHHHHHHTSS-SS-----EEEEEE-SS--HH
T ss_pred EEEhHHHHHHhhcCCCccEEEccccCCccc---------CHHHHHHHHHHHHHHhccCCCCCCC---eEEEEeCCCCCHH
Confidence 5689999876543 589999999999998 9999999999999766553222222 2333 44444544
Q ss_pred HHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCCc-----eEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHHHHH
Q 007655 251 EIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 325 (594)
Q Consensus 251 ~vr~l~ellfE~~~f~~v~~~~esvla~ygaG~s-----tg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit~~l 325 (594)
+.|.+.+.+ ...|+.+|+++.+++||++|+|.. ..+|||||+++|.|+-+-.|-++. ...+++||+++++.+
T Consensus 108 errA~~~a~-~~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtTdiavislggiv~--s~si~~gG~~~DeaI 184 (326)
T PF06723_consen 108 ERRALIDAA-RQAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTTDIAVISLGGIVA--SRSIRIGGDDIDEAI 184 (326)
T ss_dssp HHHHHHHHH-HHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEE--EEEES-SHHHHHHHH
T ss_pred HHHHHHHHH-HHcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEECCCeEEEEEEECCCEEE--EEEEEecCcchhHHH
Confidence 433455554 679999999999999999999963 479999999999999998887764 456899999999999
Q ss_pred HHHHHhcCCCCCcccccccchhhHHHHHHHHHhcccccCCccccc--eeeecccCCCCCCCceeEeeeeccCCCcCCCCc
Q 007655 326 LWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAV--AVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPK 403 (594)
Q Consensus 326 ~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~--~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~ 403 (594)
.+.++.+. ++ ......+|+||++++++...+.... ..-.+...++|.. ..+...
T Consensus 185 ~~~ir~~y--------~l--~Ig~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~---~~i~~~----------- 240 (326)
T PF06723_consen 185 IRYIREKY--------NL--LIGERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKS---IEITSS----------- 240 (326)
T ss_dssp HHHHHHHH--------SE--E--HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEE---EEEEHH-----------
T ss_pred HHHHHHhh--------Cc--ccCHHHHHHHHHhcceeeccCCCceEEEECccccCCCcEE---EEEcHH-----------
Confidence 99887652 22 3667899999999998764321111 1112223333311 111000
Q ss_pred ccCCCCCCCCCCCCCCCccccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhcc
Q 007655 404 LLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILST 483 (594)
Q Consensus 404 ~~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~~r~~~~E~lfp~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~~sI~~~ 483 (594)
.+.+.+- .....+.++|.+.+.++
T Consensus 241 ----------------------------------ev~~ai~----------------------~~~~~I~~~i~~~Le~~ 264 (326)
T PF06723_consen 241 ----------------------------------EVREAIE----------------------PPVDQIVEAIKEVLEKT 264 (326)
T ss_dssp ----------------------------------HHHHHHH----------------------HHHHHHHHHHHHHHHTS
T ss_pred ----------------------------------HHHHHHH----------------------HHHHHHHHHHHHHHHhC
Confidence 0000000 01236889999999999
Q ss_pred CChhHHHHHhcC-eEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeee
Q 007655 484 GRIDLQRKLFCS-IQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVL 549 (594)
Q Consensus 484 ~~~d~r~~L~~n-IvL~GG~S~ipGf~eRL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIl 549 (594)
|+++..+++.| |+|+||+|+++||+++|++++. + +|.+.. +|..++=+|+..+
T Consensus 265 -pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~--------~-pV~va~---~P~~~va~G~~~~ 318 (326)
T PF06723_consen 265 -PPELAADILENGIVLTGGGALLRGLDEYISEETG--------V-PVRVAD---DPLTAVARGAGKL 318 (326)
T ss_dssp --HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHS--------S--EEE-S---STTTHHHHHHHHT
T ss_pred -CHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHC--------C-CEEEcC---CHHHHHHHHHHHH
Confidence 99999998876 9999999999999999999995 1 466653 6778888886544
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.64 E-value=1.7e-15 Score=152.65 Aligned_cols=270 Identities=20% Similarity=0.229 Sum_probs=181.8
Q ss_pred CceEEccccccCCCC--CCceEEcceecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCCh
Q 007655 172 REFICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDN 249 (594)
Q Consensus 172 ~~~~vGdeAl~~~~~--~~~~l~~Pi~~G~~n~~~~~s~~~~~~dle~iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~ 249 (594)
.-+.||+||..+-.+ .+....+||+.|.+- +++..+.++.|.+++..+-... ++ +|.+++.-|..-
T Consensus 45 ~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIA---------d~~~te~ml~~fik~~~~~~~~-~~--~prI~i~vP~g~ 112 (342)
T COG1077 45 VVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIA---------DFEVTELMLKYFIKKVHKNGSS-FP--KPRIVICVPSGI 112 (342)
T ss_pred eEEEehHHHHHHhccCCCCceEEeecCCcEee---------cHHHHHHHHHHHHHHhccCCCC-CC--CCcEEEEecCCc
Confidence 347799999886532 589999999999997 9999999999998543322211 11 233333333333
Q ss_pred HHHH-HHHHHHHHhcCCCeEEEeehhhHHhhhcCC----ce-EEEEEeCCCceEEEEeeC-CeeccCCcEEecchHHHHH
Q 007655 250 REIK-EMLSIVLRDLRFASAVVHQEGLAAVFGNGL----ST-ACVVNMGAQVTSVICVED-GVALPNTEKTLPFGGEDIS 322 (594)
Q Consensus 250 ~~vr-~l~ellfE~~~f~~v~~~~esvla~ygaG~----st-g~VVDiG~~~TsV~pV~d-G~vl~~s~~~l~~GG~dit 322 (594)
..++ +.+.-..++-|...|+++.|+++|++|+|+ .+ ++|||||.++|.|+-+.. |++.. ..+.+||+.++
T Consensus 113 T~VErrAi~ea~~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGgGTTevaVISlggiv~~---~Sirv~GD~~D 189 (342)
T COG1077 113 TDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIVSS---SSVRVGGDKMD 189 (342)
T ss_pred cHHHHHHHHHHHHhccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCCCceeEEEEEecCEEEE---eeEEEecchhh
Confidence 3333 344444567899999999999999999997 34 899999999999999865 55543 34789999999
Q ss_pred HHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHhcccccCCccc----cceeeecccCCCCCCCceeEeeeeccCCCc
Q 007655 323 RCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEID----AVAVVHSYEDGMPPGSHKTRLIALNVPPMG 398 (594)
Q Consensus 323 ~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~----~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~ 398 (594)
+.+...++++. ++ ......+|+||.+..++...+.+ .....++...++|.. ....
T Consensus 190 e~Ii~yvr~~~--------nl--~IGe~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~---i~i~-------- 248 (342)
T COG1077 190 EAIIVYVRKKY--------NL--LIGERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKT---ITIN-------- 248 (342)
T ss_pred HHHHHHHHHHh--------Ce--eecHHHHHHHHHHhcccccccCCccceeeEEeeecccCCCee---EEEc--------
Confidence 99999887652 22 35567799999999887652111 000111112222210 0000
Q ss_pred CCCCcccCCCCCCCCCCCCCCCccccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHH
Q 007655 399 LFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTS 478 (594)
Q Consensus 399 lf~p~~~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~~r~~~~E~lfp~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~~ 478 (594)
. ..+.|.+- .....|.++|..
T Consensus 249 --------s-----------------------------~ev~eal~----------------------~~v~~Iveair~ 269 (342)
T COG1077 249 --------S-----------------------------EEIAEALE----------------------EPLNGIVEAIRL 269 (342)
T ss_pred --------H-----------------------------HHHHHHHH----------------------HHHHHHHHHHHH
Confidence 0 00001110 112368899999
Q ss_pred HHhccCChhHHHHHhcC-eEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeee
Q 007655 479 SILSTGRIDLQRKLFCS-IQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVL 549 (594)
Q Consensus 479 sI~~~~~~d~r~~L~~n-IvL~GG~S~ipGf~eRL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIl 549 (594)
.+.+| |+++-.+.+.+ |+|+||+|++.||+++|.++..- .|.+.+ ||-.++=+|+...
T Consensus 270 ~Le~t-pPeL~~DI~ergivltGGGalLrglD~~i~~et~~---------pv~ia~---~pL~~Va~G~G~~ 328 (342)
T COG1077 270 VLEKT-PPELAADIVERGIVLTGGGALLRGLDRLLSEETGV---------PVIIAD---DPLTCVAKGTGKA 328 (342)
T ss_pred HHhhC-CchhcccHhhCceEEecchHHhcCchHhHHhccCC---------eEEECC---ChHHHHHhccchh
Confidence 99999 78999999999 99999999999999999988752 345543 5556677775443
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.43 E-value=6.2e-12 Score=126.43 Aligned_cols=134 Identities=18% Similarity=0.174 Sum_probs=104.0
Q ss_pred cceecCeeeecCCCChhhcHHHHHHHHHHHHh---hhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCCCeEE
Q 007655 193 RPIRRGHLNISQHYPMQQVLEDLYAIWDWILT---EKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAV 269 (594)
Q Consensus 193 ~Pi~~G~~n~~~~~s~~~~~~dle~iw~~~l~---~~L~i~~~d~~~y~~VLvip~~~~~~~vr~l~ellfE~~~f~~v~ 269 (594)
.||++|.+. |++..+.+++++.. ..++.+.. .+|+-+|..++..+. +.+.-+++.-|+.-+.
T Consensus 29 ~~~~~g~I~---------d~~~~~~~l~~l~~~a~~~~g~~~~-----~vvisVP~~~~~~~r-~a~~~a~~~aGl~~~~ 93 (239)
T TIGR02529 29 DVVRDGIVV---------DFLGAVEIVRRLKDTLEQKLGIELT-----HAATAIPPGTIEGDP-KVIVNVIESAGIEVLH 93 (239)
T ss_pred ccccCCeEE---------EhHHHHHHHHHHHHHHHHHhCCCcC-----cEEEEECCCCCcccH-HHHHHHHHHcCCceEE
Confidence 589999998 99999999999984 24443322 257767777765543 3444556778999999
Q ss_pred EeehhhHHhhhcCCceEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHHhcCCCCCcccccccchhhH
Q 007655 270 VHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDL 349 (594)
Q Consensus 270 ~~~esvla~ygaG~stg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit~~l~~lL~~~~~~p~~~~~~l~~~~d~ 349 (594)
++.++++++.+.|....+|||+|+++|.++-+.+|.++. ...+++||+++|+.+.+.+. .++
T Consensus 94 li~ep~Aaa~~~~~~~~~vvDiGggtt~i~i~~~G~i~~--~~~~~~GG~~it~~Ia~~~~----------------i~~ 155 (239)
T TIGR02529 94 VLDEPTAAAAVLQIKNGAVVDVGGGTTGISILKKGKVIY--SADEPTGGTHMSLVLAGAYG----------------ISF 155 (239)
T ss_pred EeehHHHHHHHhcCCCcEEEEeCCCcEEEEEEECCeEEE--EEeeecchHHHHHHHHHHhC----------------CCH
Confidence 999999999988887789999999999999999998775 34678999999998865431 345
Q ss_pred HHHHHHHHhc
Q 007655 350 LMLNRIKESY 359 (594)
Q Consensus 350 ~l~e~lKe~~ 359 (594)
..+|++|...
T Consensus 156 ~~AE~~K~~~ 165 (239)
T TIGR02529 156 EEAEEYKRGH 165 (239)
T ss_pred HHHHHHHHhc
Confidence 6789998754
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.21 E-value=2.7e-10 Score=116.47 Aligned_cols=138 Identities=19% Similarity=0.204 Sum_probs=102.3
Q ss_pred ceEEcceecCeeeecCCCChhhcHHHHHHHHHHHHh---hhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCC
Q 007655 189 YCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILT---EKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRF 265 (594)
Q Consensus 189 ~~l~~Pi~~G~~n~~~~~s~~~~~~dle~iw~~~l~---~~L~i~~~d~~~y~~VLvip~~~~~~~vr~l~ellfE~~~f 265 (594)
.....++++|.+. |++.....++++.. +.++++... +++-+|+.++....+.+. -+.+..|+
T Consensus 52 ~~~~~~vr~G~i~---------di~~a~~~i~~~~~~ae~~~g~~i~~-----v~~~vp~~~~~~~~~~~~-~~~~~aGl 116 (267)
T PRK15080 52 LEWADVVRDGIVV---------DFIGAVTIVRRLKATLEEKLGRELTH-----AATAIPPGTSEGDPRAII-NVVESAGL 116 (267)
T ss_pred eccccccCCCEEe---------eHHHHHHHHHHHHHHHHHHhCCCcCe-----EEEEeCCCCCchhHHHHH-HHHHHcCC
Confidence 3456789999987 78888888887775 244554221 344566666443322343 66788999
Q ss_pred CeEEEeehhhHHhhhcCCceEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHHhcCCCCCcccccccc
Q 007655 266 ASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTK 345 (594)
Q Consensus 266 ~~v~~~~esvla~ygaG~stg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit~~l~~lL~~~~~~p~~~~~~l~~ 345 (594)
.-..++.++.+++.+.+...++|||||+++|.++-+.+|.++.. ..+++||+++|+.+.+.+.
T Consensus 117 ~~~~ii~e~~A~a~~~~~~~~~vvDIGggtt~i~v~~~g~~~~~--~~~~~GG~~it~~Ia~~l~--------------- 179 (267)
T PRK15080 117 EVTHVLDEPTAAAAVLGIDNGAVVDIGGGTTGISILKDGKVVYS--ADEPTGGTHMSLVLAGAYG--------------- 179 (267)
T ss_pred ceEEEechHHHHHHHhCCCCcEEEEeCCCcEEEEEEECCeEEEE--ecccCchHHHHHHHHHHhC---------------
Confidence 99999999999998888777899999999999998899987753 4679999999999876542
Q ss_pred hhhHHHHHHHHHhc
Q 007655 346 AMDLLMLNRIKESY 359 (594)
Q Consensus 346 ~~d~~l~e~lKe~~ 359 (594)
.++..+|++|...
T Consensus 180 -i~~~eAE~lK~~~ 192 (267)
T PRK15080 180 -ISFEEAEQYKRDP 192 (267)
T ss_pred -CCHHHHHHHHhcc
Confidence 2356688888653
No 26
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=98.79 E-value=2.7e-08 Score=108.40 Aligned_cols=94 Identities=16% Similarity=0.219 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHHH
Q 007655 249 NREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISR 323 (594)
Q Consensus 249 ~~~vr~l~ellfE~~~f~~v~~~~esvla~ygaG~-----stg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit~ 323 (594)
+..++.+.+ +++.-|+.-..++.+++|++++++. ...||||+|+++|.++-+.+|.++ ....+++||+++|+
T Consensus 165 ~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~--~~~~i~~GG~~it~ 241 (420)
T PRK09472 165 NDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALR--HTKVIPYAGNVVTS 241 (420)
T ss_pred hHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEE--EEeeeechHHHHHH
Confidence 344555665 6789999999999999999998764 247999999999999999999877 34569999999999
Q ss_pred HHHHHHHhcCCCCCcccccccchhhHHHHHHHHHhccc
Q 007655 324 CLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCE 361 (594)
Q Consensus 324 ~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~ 361 (594)
.+...|. .+...+|++|.++..
T Consensus 242 dIa~~l~----------------i~~~~AE~lK~~~g~ 263 (420)
T PRK09472 242 DIAYAFG----------------TPPSDAEAIKVRHGC 263 (420)
T ss_pred HHHHHhC----------------cCHHHHHHHHHhcce
Confidence 9875442 235679999988754
No 27
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=98.77 E-value=3.4e-08 Score=105.90 Aligned_cols=93 Identities=19% Similarity=0.321 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHHHHHH
Q 007655 252 IKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLL 326 (594)
Q Consensus 252 vr~l~ellfE~~~f~~v~~~~esvla~ygaG~-----stg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit~~l~ 326 (594)
++.+.+ +++..|+.-+.+..+++|++++++. ...+|||+|+++|+++.+.+|.... ...+++||+++|+.+.
T Consensus 160 v~~~~~-~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~GG~~it~~i~ 236 (371)
T TIGR01174 160 LRNLVK-CVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIGGNHITKDIA 236 (371)
T ss_pred HHHHHH-HHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--EeeecchHHHHHHHHH
Confidence 333444 5688999999999999999988753 2479999999999999999998664 4568999999999887
Q ss_pred HHHHhcCCCCCcccccccchhhHHHHHHHHHhccccc
Q 007655 327 WTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIK 363 (594)
Q Consensus 327 ~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~ 363 (594)
+.+. ..+..+|++|.+++...
T Consensus 237 ~~l~----------------~~~~~AE~lK~~~~~~~ 257 (371)
T TIGR01174 237 KALR----------------TPLEEAERIKIKYGCAS 257 (371)
T ss_pred HHhC----------------CCHHHHHHHHHHeeEec
Confidence 6431 23567999999998654
No 28
>CHL00094 dnaK heat shock protein 70
Probab=98.76 E-value=1.6e-07 Score=107.33 Aligned_cols=91 Identities=21% Similarity=0.282 Sum_probs=68.7
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEeeCC--ee-ccCC
Q 007655 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDG--VA-LPNT 310 (594)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfE~~~f~~v~~~~esvla~ygaG~-----stg~VVDiG~~~TsV~pV~dG--~v-l~~s 310 (594)
+|+-+|..|+..+ |+.+.-..+.-|+.-+.++.++.||++++|. ...+|+|+|++++.|+-+.-| .. +..+
T Consensus 138 ~VItVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~ 216 (621)
T CHL00094 138 AVITVPAYFNDSQ-RQATKDAGKIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLST 216 (621)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEE
Confidence 6888888887554 4555555678899999999999999988875 357999999999999887533 21 1122
Q ss_pred cEEecchHHHHHHHHHHHHH
Q 007655 311 EKTLPFGGEDISRCLLWTQR 330 (594)
Q Consensus 311 ~~~l~~GG~dit~~l~~lL~ 330 (594)
.....+||+++++.|.+.+.
T Consensus 217 ~gd~~lGG~d~D~~l~~~~~ 236 (621)
T CHL00094 217 SGDTHLGGDDFDKKIVNWLI 236 (621)
T ss_pred ecCCCcChHHHHHHHHHHHH
Confidence 33468999999999886553
No 29
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=98.76 E-value=1.3e-07 Score=108.64 Aligned_cols=91 Identities=21% Similarity=0.298 Sum_probs=71.0
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCCc-----eEEEEEeCCCceEEEEee--CCeec-cCC
Q 007655 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVE--DGVAL-PNT 310 (594)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfE~~~f~~v~~~~esvla~ygaG~s-----tg~VVDiG~~~TsV~pV~--dG~vl-~~s 310 (594)
+|+-+|..|+..+ |+.+.-..+.-|++-+.++.++.||++++|.. .-+|+|+|++++.|+-+. +|... ..+
T Consensus 177 ~VITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~ 255 (663)
T PTZ00400 177 AVITVPAYFNDSQ-RQATKDAGKIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVKAT 255 (663)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEEEec
Confidence 6777888887665 45555667788999999999999999988753 579999999999998774 56432 223
Q ss_pred cEEecchHHHHHHHHHHHHH
Q 007655 311 EKTLPFGGEDISRCLLWTQR 330 (594)
Q Consensus 311 ~~~l~~GG~dit~~l~~lL~ 330 (594)
.....+||+|+++.|.+.+.
T Consensus 256 ~gd~~LGG~d~D~~l~~~l~ 275 (663)
T PTZ00400 256 NGNTSLGGEDFDQRILNYLI 275 (663)
T ss_pred ccCCCcCHHHHHHHHHHHHH
Confidence 34468999999999987654
No 30
>PLN03184 chloroplast Hsp70; Provisional
Probab=98.71 E-value=2.9e-07 Score=105.80 Aligned_cols=91 Identities=22% Similarity=0.310 Sum_probs=68.8
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEee--CCee-ccCC
Q 007655 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVA-LPNT 310 (594)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfE~~~f~~v~~~~esvla~ygaG~-----stg~VVDiG~~~TsV~pV~--dG~v-l~~s 310 (594)
+|+-+|..|+..+ |+.+.-..+.-|+.-+.++.++.||++++|. ..-+|+|+|++++.|+.+. +|.. +-.+
T Consensus 175 ~VITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~ 253 (673)
T PLN03184 175 AVITVPAYFNDSQ-RTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLST 253 (673)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEe
Confidence 6777888887655 4555556788899999999999999988765 3579999999999987764 3332 1122
Q ss_pred cEEecchHHHHHHHHHHHHH
Q 007655 311 EKTLPFGGEDISRCLLWTQR 330 (594)
Q Consensus 311 ~~~l~~GG~dit~~l~~lL~ 330 (594)
.-...+||+++++.|.+.+.
T Consensus 254 ~gd~~LGG~dfD~~L~~~~~ 273 (673)
T PLN03184 254 SGDTHLGGDDFDKRIVDWLA 273 (673)
T ss_pred cCCCccCHHHHHHHHHHHHH
Confidence 23468999999999987654
No 31
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=98.71 E-value=1.7e-07 Score=107.26 Aligned_cols=91 Identities=20% Similarity=0.279 Sum_probs=68.5
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEeeC--Cee-ccCC
Q 007655 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVED--GVA-LPNT 310 (594)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfE~~~f~~v~~~~esvla~ygaG~-----stg~VVDiG~~~TsV~pV~d--G~v-l~~s 310 (594)
+|+-+|..|+..+ |+.+.-..+..|+.-+.++.++.||++++|. .+-+|+|+|+++|.|+.+.- |.. +..+
T Consensus 136 ~VItVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~ 214 (627)
T PRK00290 136 AVITVPAYFNDAQ-RQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLST 214 (627)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEe
Confidence 6787888887655 4455566678899999999999999887764 45899999999999887743 322 2222
Q ss_pred cEEecchHHHHHHHHHHHHH
Q 007655 311 EKTLPFGGEDISRCLLWTQR 330 (594)
Q Consensus 311 ~~~l~~GG~dit~~l~~lL~ 330 (594)
.....+||.++++.|.+.+.
T Consensus 215 ~gd~~lGG~d~D~~l~~~~~ 234 (627)
T PRK00290 215 NGDTHLGGDDFDQRIIDYLA 234 (627)
T ss_pred cCCCCcChHHHHHHHHHHHH
Confidence 33468999999999987654
No 32
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=98.70 E-value=1.3e-07 Score=107.53 Aligned_cols=110 Identities=21% Similarity=0.221 Sum_probs=78.1
Q ss_pred HHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEE
Q 007655 215 LYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVV 289 (594)
Q Consensus 215 le~iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~vr~l~ellfE~~~f~~v~~~~esvla~ygaG~-----stg~VV 289 (594)
|..|++.+- ..++.+.. .+|+-+|..|+..+ |+.+.-..+..|+.-+.++.++.||++++|. .+-+|+
T Consensus 114 L~~lk~~a~-~~lg~~v~-----~~VItVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~ 186 (599)
T TIGR01991 114 LKKLKQRAE-ESLGGDLV-----GAVITVPAYFDDAQ-RQATKDAARLAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVY 186 (599)
T ss_pred HHHHHHHHH-HHhCCCcc-----eEEEEECCCCCHHH-HHHHHHHHHHcCCCceEEecCHHHHHHHHhhccCCCCEEEEE
Confidence 344555443 45654432 26887888887665 4555666788999999999999999877764 357999
Q ss_pred EeCCCceEEEEee--CCee-ccCCcEEecchHHHHHHHHHHHHHh
Q 007655 290 NMGAQVTSVICVE--DGVA-LPNTEKTLPFGGEDISRCLLWTQRH 331 (594)
Q Consensus 290 DiG~~~TsV~pV~--dG~v-l~~s~~~l~~GG~dit~~l~~lL~~ 331 (594)
|+|++++.|+.+. +|.. +-.+.....+||+|+|+.|.+.+..
T Consensus 187 DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~ 231 (599)
T TIGR01991 187 DLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILK 231 (599)
T ss_pred EcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 9999999998774 4432 1122233589999999999987654
No 33
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=98.67 E-value=2.9e-07 Score=105.28 Aligned_cols=91 Identities=22% Similarity=0.258 Sum_probs=70.5
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEee--CCee-ccCC
Q 007655 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVA-LPNT 310 (594)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfE~~~f~~v~~~~esvla~ygaG~-----stg~VVDiG~~~TsV~pV~--dG~v-l~~s 310 (594)
+|+-+|..|+..+ |+.+.-..+..|+.-+.++.++.||++++|. ..-+|+|+|++++.|+-+. +|.. +..+
T Consensus 163 aVITVPayF~~~q-R~at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at 241 (657)
T PTZ00186 163 AVVTCPAYFNDAQ-RQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKAT 241 (657)
T ss_pred EEEEECCCCChHH-HHHHHHHHHHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEe
Confidence 6777877777654 5566667788899999999999999988775 3579999999999998875 6643 2223
Q ss_pred cEEecchHHHHHHHHHHHHH
Q 007655 311 EKTLPFGGEDISRCLLWTQR 330 (594)
Q Consensus 311 ~~~l~~GG~dit~~l~~lL~ 330 (594)
.....+||+|+++.|.+.+.
T Consensus 242 ~Gd~~LGG~DfD~~l~~~~~ 261 (657)
T PTZ00186 242 NGDTHLGGEDFDLALSDYIL 261 (657)
T ss_pred cCCCCCCchhHHHHHHHHHH
Confidence 34568999999998887553
No 34
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=98.62 E-value=3.9e-07 Score=103.74 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=74.7
Q ss_pred HHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC------ceEEEE
Q 007655 216 YAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------STACVV 289 (594)
Q Consensus 216 e~iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~vr~l~ellfE~~~f~~v~~~~esvla~ygaG~------stg~VV 289 (594)
..+++.+- ..++-+.. .+|+-+|..|+..+ |+.+.-..+..|+.-+.++.++.||++++|. .+-+|+
T Consensus 116 ~~l~~~a~-~~~~~~v~-----~~VItVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~ 188 (595)
T TIGR02350 116 QKLKKDAE-AYLGEKVT-----EAVITVPAYFNDAQ-RQATKDAGKIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVF 188 (595)
T ss_pred HHHHHHHH-HHhCCCCC-----eEEEEECCCCCHHH-HHHHHHHHHHcCCceEEEecchHHHHHHHhhcccCCCcEEEEE
Confidence 44444442 45554322 26888888887665 4444556677899999999999999877654 357999
Q ss_pred EeCCCceEEEEee--CCee-ccCCcEEecchHHHHHHHHHHHHH
Q 007655 290 NMGAQVTSVICVE--DGVA-LPNTEKTLPFGGEDISRCLLWTQR 330 (594)
Q Consensus 290 DiG~~~TsV~pV~--dG~v-l~~s~~~l~~GG~dit~~l~~lL~ 330 (594)
|+|++++.|+.+. +|.. +..+.....+||.++++.|.+.+.
T Consensus 189 D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~ 232 (595)
T TIGR02350 189 DLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLA 232 (595)
T ss_pred ECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHH
Confidence 9999999887763 3432 122233467999999999987654
No 35
>PRK13411 molecular chaperone DnaK; Provisional
Probab=98.62 E-value=4e-07 Score=104.50 Aligned_cols=109 Identities=20% Similarity=0.253 Sum_probs=76.2
Q ss_pred HHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC------ceEEE
Q 007655 215 LYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------STACV 288 (594)
Q Consensus 215 le~iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~vr~l~ellfE~~~f~~v~~~~esvla~ygaG~------stg~V 288 (594)
|..+++.+- ..|+-+.. .+|+-+|..|+..+ |+.+.-..+.-|+.-+.++.++.||++++|. ..-+|
T Consensus 118 L~~lk~~ae-~~lg~~v~-----~~VITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV 190 (653)
T PRK13411 118 LQKLKQDAE-AYLGEPVT-----QAVITVPAYFTDAQ-RQATKDAGTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILV 190 (653)
T ss_pred HHHHHHHHH-HHhCCCcc-----eEEEEECCCCCcHH-HHHHHHHHHHcCCCeEEEecchHHHHHHhcccccCCCCEEEE
Confidence 455555553 45654322 26887888887665 4445556778899999999999999988775 24799
Q ss_pred EEeCCCceEEEEee--CCee-ccCCcEEecchHHHHHHHHHHHHH
Q 007655 289 VNMGAQVTSVICVE--DGVA-LPNTEKTLPFGGEDISRCLLWTQR 330 (594)
Q Consensus 289 VDiG~~~TsV~pV~--dG~v-l~~s~~~l~~GG~dit~~l~~lL~ 330 (594)
+|+|++++.|+-+. +|.. +..+.....+||+++++.|.+.+.
T Consensus 191 ~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~ 235 (653)
T PRK13411 191 FDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLV 235 (653)
T ss_pred EEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHH
Confidence 99999999988663 3432 222233457999999999886554
No 36
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=98.57 E-value=8.5e-07 Score=101.88 Aligned_cols=91 Identities=20% Similarity=0.259 Sum_probs=69.3
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-------ceEEEEEeCCCceEEEEee--CCeec-c
Q 007655 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-------STACVVNMGAQVTSVICVE--DGVAL-P 308 (594)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfE~~~f~~v~~~~esvla~ygaG~-------stg~VVDiG~~~TsV~pV~--dG~vl-~ 308 (594)
+|+-+|..|+..+ |+.+.-..+..|+.-+.++.++.||++++|. .+-+|+|+|++++.|+-|. +|..- .
T Consensus 143 ~VItVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~ 221 (653)
T PTZ00009 143 AVVTVPAYFNDSQ-RQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVK 221 (653)
T ss_pred eEEEeCCCCCHHH-HHHHHHHHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEE
Confidence 6777888887654 5566667788899999999999999887764 3589999999999987764 55422 2
Q ss_pred CCcEEecchHHHHHHHHHHHHH
Q 007655 309 NTEKTLPFGGEDISRCLLWTQR 330 (594)
Q Consensus 309 ~s~~~l~~GG~dit~~l~~lL~ 330 (594)
.+.-...+||+|++..|.+.+.
T Consensus 222 a~~gd~~lGG~d~D~~l~~~~~ 243 (653)
T PTZ00009 222 ATAGDTHLGGEDFDNRLVEFCV 243 (653)
T ss_pred EecCCCCCChHHHHHHHHHHHH
Confidence 2223468999999999886553
No 37
>PRK13410 molecular chaperone DnaK; Provisional
Probab=98.55 E-value=8.2e-07 Score=101.91 Aligned_cols=109 Identities=22% Similarity=0.277 Sum_probs=77.1
Q ss_pred HHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEE
Q 007655 215 LYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVV 289 (594)
Q Consensus 215 le~iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~vr~l~ellfE~~~f~~v~~~~esvla~ygaG~-----stg~VV 289 (594)
|..|++.+- ..++-+.. .+|+-+|..|+..+ |+.+.-..+.-|+.-+.++.++.||++++|. .+-+|+
T Consensus 120 L~~lk~~ae-~~lg~~v~-----~~VITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~ 192 (668)
T PRK13410 120 LRKLADDAS-RYLGEPVT-----GAVITVPAYFNDSQ-RQATRDAGRIAGLEVERILNEPTAAALAYGLDRSSSQTVLVF 192 (668)
T ss_pred HHHHHHHHH-HHhCCCcc-----eEEEEECCCCCHHH-HHHHHHHHHHcCCCeEEEecchHHHHHHhccccCCCCEEEEE
Confidence 455555553 45654322 26887888887665 4445555678899999999999999988875 357999
Q ss_pred EeCCCceEEEEee--CCee-ccCCcEEecchHHHHHHHHHHHHH
Q 007655 290 NMGAQVTSVICVE--DGVA-LPNTEKTLPFGGEDISRCLLWTQR 330 (594)
Q Consensus 290 DiG~~~TsV~pV~--dG~v-l~~s~~~l~~GG~dit~~l~~lL~ 330 (594)
|+|++++.|+.+. +|.. +..+.....+||.++++.|.+.+.
T Consensus 193 DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~ 236 (668)
T PRK13410 193 DLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLA 236 (668)
T ss_pred ECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHH
Confidence 9999999988774 4432 222233467999999999886553
No 38
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=98.55 E-value=2.8e-07 Score=104.39 Aligned_cols=114 Identities=19% Similarity=0.295 Sum_probs=79.1
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEee--CCee-ccCC
Q 007655 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVA-LPNT 310 (594)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfE~~~f~~v~~~~esvla~ygaG~-----stg~VVDiG~~~TsV~pV~--dG~v-l~~s 310 (594)
+|+-+|..|+..+ |+.+.-..+.-|+.-+.++.|+.||++++|. ..-+|+|+|++++.|+-+. +|.. +-.+
T Consensus 144 aVITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at 222 (595)
T PRK01433 144 AVITVPAHFNDAA-RGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIAT 222 (595)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEE
Confidence 6877888887654 5566666788899999999999999998875 3469999999999987774 5532 1122
Q ss_pred cEEecchHHHHHHHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHhcc
Q 007655 311 EKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYC 360 (594)
Q Consensus 311 ~~~l~~GG~dit~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c 360 (594)
.....+||+|+++.|.+.+...-..+ ........++..|+.++
T Consensus 223 ~gd~~lGG~d~D~~l~~~~~~~~~~~-------~~~~~~~~~ekaK~~LS 265 (595)
T PRK01433 223 NGDNMLGGNDIDVVITQYLCNKFDLP-------NSIDTLQLAKKAKETLT 265 (595)
T ss_pred cCCcccChHHHHHHHHHHHHHhcCCC-------CCHHHHHHHHHHHHhcC
Confidence 23357999999999988765431110 01112345777777653
No 39
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=98.53 E-value=2.1e-07 Score=106.04 Aligned_cols=92 Identities=21% Similarity=0.275 Sum_probs=69.7
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEee--CCee-ccCC
Q 007655 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVA-LPNT 310 (594)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfE~~~f~~v~~~~esvla~ygaG~-----stg~VVDiG~~~TsV~pV~--dG~v-l~~s 310 (594)
+|+-+|..|+..+ |+.+.-..+..|+.-+.++.++.||++++|. ..-+|+|+|++++.|+.+. +|.. +-.+
T Consensus 152 ~VITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat 230 (616)
T PRK05183 152 AVITVPAYFDDAQ-RQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLAT 230 (616)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEe
Confidence 6777888887665 4555666788999999999999999877664 2479999999999988774 4432 1222
Q ss_pred cEEecchHHHHHHHHHHHHHh
Q 007655 311 EKTLPFGGEDISRCLLWTQRH 331 (594)
Q Consensus 311 ~~~l~~GG~dit~~l~~lL~~ 331 (594)
.....+||+|+++.|.+.+..
T Consensus 231 ~gd~~lGG~d~D~~l~~~~~~ 251 (616)
T PRK05183 231 GGDSALGGDDFDHLLADWILE 251 (616)
T ss_pred cCCCCcCHHHHHHHHHHHHHH
Confidence 334679999999999876654
No 40
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=98.33 E-value=2.4e-06 Score=91.90 Aligned_cols=90 Identities=17% Similarity=0.239 Sum_probs=73.9
Q ss_pred HHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHHHHHHHH
Q 007655 254 EMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWT 328 (594)
Q Consensus 254 ~l~ellfE~~~f~~v~~~~esvla~ygaG~-----stg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit~~l~~l 328 (594)
+-+.-++|.-|..=..++-+++||+.++=. -.+|+||||+++|+|+...+|.+... ..+++||+++|.-+.+.
T Consensus 168 ~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~~--~~ipvgG~~vT~DIa~~ 245 (418)
T COG0849 168 ENLEKCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRYT--GVIPVGGDHVTKDIAKG 245 (418)
T ss_pred HHHHHHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEEE--eeEeeCccHHHHHHHHH
Confidence 445566788898888888999999887632 46899999999999999999998854 45999999999999877
Q ss_pred HHhcCCCCCcccccccchhhHHHHHHHHHhccc
Q 007655 329 QRHHQTWPQIRTDILTKAMDLLMLNRIKESYCE 361 (594)
Q Consensus 329 L~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~ 361 (594)
|. .+++.+|+||.++..
T Consensus 246 l~----------------t~~~~AE~iK~~~g~ 262 (418)
T COG0849 246 LK----------------TPFEEAERIKIKYGS 262 (418)
T ss_pred hC----------------CCHHHHHHHHHHcCc
Confidence 63 245679999998864
No 41
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=98.25 E-value=3.8e-06 Score=95.81 Aligned_cols=92 Identities=23% Similarity=0.272 Sum_probs=67.7
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC------ceEEEEEeCCCceEEEEee--CCeec-cC
Q 007655 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------STACVVNMGAQVTSVICVE--DGVAL-PN 309 (594)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfE~~~f~~v~~~~esvla~ygaG~------stg~VVDiG~~~TsV~pV~--dG~vl-~~ 309 (594)
+|+-+|..|+..+ |+.+.-+.+..|+..+.++.++.||++++|. .+-+|+|+|++++.|+.|. +|..- ..
T Consensus 138 ~vitVPa~~~~~q-r~~~~~Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~ 216 (602)
T PF00012_consen 138 VVITVPAYFTDEQ-RQALRDAAELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLA 216 (602)
T ss_dssp EEEEE-TT--HHH-HHHHHHHHHHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEE
T ss_pred ceeeechhhhhhh-hhcccccccccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccc
Confidence 6777888888765 5566677788999999999999999876653 3689999999999888874 56432 22
Q ss_pred CcEEecchHHHHHHHHHHHHHh
Q 007655 310 TEKTLPFGGEDISRCLLWTQRH 331 (594)
Q Consensus 310 s~~~l~~GG~dit~~l~~lL~~ 331 (594)
+.....+||.++++.|.+.+..
T Consensus 217 ~~~~~~lGG~~~D~~l~~~~~~ 238 (602)
T PF00012_consen 217 TAGDNNLGGRDFDEALAEYLLE 238 (602)
T ss_dssp EEEETTCSHHHHHHHHHHHHHH
T ss_pred cccccccccceecceeeccccc
Confidence 3345689999999999876643
No 42
>PRK11678 putative chaperone; Provisional
Probab=98.22 E-value=4.3e-05 Score=83.86 Aligned_cols=86 Identities=20% Similarity=0.249 Sum_probs=63.7
Q ss_pred eeeecCCCCC-----hHHH--HHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEee-CC-
Q 007655 239 AILVLPESFD-----NREI--KEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE-DG- 304 (594)
Q Consensus 239 ~VLvip~~~~-----~~~v--r~l~ellfE~~~f~~v~~~~esvla~ygaG~-----stg~VVDiG~~~TsV~pV~-dG- 304 (594)
+|+-+|..|+ ..+. ++++.-..+.-||+.+.++.|+.||++++|. ..-+|+|+|++++.++-|. ++
T Consensus 152 ~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~~~ 231 (450)
T PRK11678 152 AVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMGPS 231 (450)
T ss_pred EEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEecCc
Confidence 6777777776 2222 2345666788999999999999999998874 4589999999999888774 21
Q ss_pred ---------eeccCCcEEecchHHHHHHHHH
Q 007655 305 ---------VALPNTEKTLPFGGEDISRCLL 326 (594)
Q Consensus 305 ---------~vl~~s~~~l~~GG~dit~~l~ 326 (594)
-++..+- ..+||+|+++.|.
T Consensus 232 ~~~~~~r~~~vla~~G--~~lGG~DfD~~L~ 260 (450)
T PRK11678 232 WRGRADRSASLLGHSG--QRIGGNDLDIALA 260 (450)
T ss_pred ccccCCcceeEEecCC--CCCChHHHHHHHH
Confidence 1232222 3699999999986
No 43
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=3.2e-05 Score=87.45 Aligned_cols=150 Identities=23% Similarity=0.327 Sum_probs=101.4
Q ss_pred ceEEccccccCC----CCCCceEEcceecC------eeeec-CCCChhhc-HHHHHHHHHHHHhhhcCCCCCCCccccee
Q 007655 173 EFICGEEALRVS----PTEPYCIHRPIRRG------HLNIS-QHYPMQQV-LEDLYAIWDWILTEKLHIPRSERNLYSAI 240 (594)
Q Consensus 173 ~~~vGdeAl~~~----~~~~~~l~~Pi~~G------~~n~~-~~~s~~~~-~~dle~iw~~~l~~~L~i~~~d~~~y~~V 240 (594)
+.++|..|.+.. .+.-+.+.+-|-+| .+.+. ..++.++. -.-|.++++++ ...|+-...+ +|
T Consensus 51 ~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~~~~~~~~~~~~~~~~eeisa~~L~~lk~~a-e~~lg~~v~~-----~V 124 (579)
T COG0443 51 EVLVGQAAKRQAVDNPENTIFSIKRKIGRGSNGLKISVEVDGKKYTPEEISAMILTKLKEDA-EAYLGEKVTD-----AV 124 (579)
T ss_pred CEEecHHHHHHhhhCCcceEEEEehhcCCCCCCCcceeeeCCeeeCHHHHHHHHHHHHHHHH-HHhhCCCcce-----EE
Confidence 588999887632 22234455444433 22222 23444332 23356677766 3556544333 57
Q ss_pred eecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC-----ceEEEEEeCCCceEEEEee--CCe-eccCCcE
Q 007655 241 LVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGV-ALPNTEK 312 (594)
Q Consensus 241 Lvip~~~~~~~vr~l~ellfE~~~f~~v~~~~esvla~ygaG~-----stg~VVDiG~~~TsV~pV~--dG~-vl~~s~~ 312 (594)
+-+|..|+..+ |+.+.-..+..|+.-+.++.|+.||+|++|. ..-+|+|+|++++.|+=|. +|. -+..+..
T Consensus 125 ItVPayF~d~q-R~at~~A~~iaGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~g 203 (579)
T COG0443 125 ITVPAYFNDAQ-RQATKDAARIAGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGG 203 (579)
T ss_pred EEeCCCCCHHH-HHHHHHHHHHcCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCC
Confidence 77777777666 6778888899999999999999999999886 3679999999999998885 452 2233455
Q ss_pred EecchHHHHHHHHHHHH
Q 007655 313 TLPFGGEDISRCLLWTQ 329 (594)
Q Consensus 313 ~l~~GG~dit~~l~~lL 329 (594)
...+||+|++..|...+
T Consensus 204 d~~LGGddfD~~l~~~~ 220 (579)
T COG0443 204 DNHLGGDDFDNALIDYL 220 (579)
T ss_pred CcccCchhHHHHHHHHH
Confidence 67899999999987644
No 44
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=98.01 E-value=0.00012 Score=77.68 Aligned_cols=91 Identities=20% Similarity=0.271 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhc------------CCceEEEEEeCCCceEEEEeeCCeeccCCcEEecc
Q 007655 249 NREIKEMLSIVLRDLRFASAVVHQEGLAAVFGN------------GLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPF 316 (594)
Q Consensus 249 ~~~vr~l~ellfE~~~f~~v~~~~esvla~yga------------G~stg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~ 316 (594)
+..++.+.++ |+..|+.-..+..+++|..-+. ...+.++||||+..|+++-+.+|.++. ...+++
T Consensus 142 ~~~v~~~~~~-~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~--~r~i~~ 218 (348)
T TIGR01175 142 KEVVDSRLHA-LKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLF--TREVPF 218 (348)
T ss_pred HHHHHHHHHH-HHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEE--EEEeec
Confidence 4445556665 7888888777777777753222 112489999999999999999998874 567999
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcccccccchhhHHHHHHHHHh
Q 007655 317 GGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKES 358 (594)
Q Consensus 317 GG~dit~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~ 358 (594)
||+++|+.+.+.+. .+++-++++|.+
T Consensus 219 G~~~i~~~i~~~~~----------------~~~~~Ae~~k~~ 244 (348)
T TIGR01175 219 GTRQLTSELSRAYG----------------LNPEEAGEAKQQ 244 (348)
T ss_pred hHHHHHHHHHHHcC----------------CCHHHHHHHHhc
Confidence 99999998875431 345678888864
No 45
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=97.45 E-value=0.00059 Score=72.37 Aligned_cols=126 Identities=19% Similarity=0.357 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCcccc-------------eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhH--
Q 007655 212 LEDLYAIWDWILTEKLHIPRSERNLYS-------------AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLA-- 276 (594)
Q Consensus 212 ~~dle~iw~~~l~~~L~i~~~d~~~y~-------------~VLvip~~~~~~~vr~l~ellfE~~~f~~v~~~~esvl-- 276 (594)
-++++..+.+-..+.+.++.+|...-. .||++- ..+..+...+++ |+..|+.-..+--++.|
T Consensus 87 ~~el~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~A--a~k~~v~~~~~~-~~~aGL~~~~vDv~~~Al~ 163 (340)
T PF11104_consen 87 EKELEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVA--APKEIVESYVEL-FEEAGLKPVAVDVEAFALA 163 (340)
T ss_dssp HHHHHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEE--EEHHHHHHHHHH-HHHTT-EEEEEEEHHHHGG
T ss_pred HHHHHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEE--EcHHHHHHHHHH-HHHcCCceEEEeehHHHHH
Confidence 466777777766666665554431100 122210 112333344444 68888877666555444
Q ss_pred HhhhcC---------CceEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHHhcCCCCCcccccccchh
Q 007655 277 AVFGNG---------LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAM 347 (594)
Q Consensus 277 a~ygaG---------~stg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit~~l~~lL~~~~~~p~~~~~~l~~~~ 347 (594)
-+|..- ..+-++||||+..|+++-+.+|.++- .+.+++||+++|+.+.+.+. .
T Consensus 164 r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f--~R~i~~G~~~l~~~i~~~~~----------------i 225 (340)
T PF11104_consen 164 RLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPIF--SRSIPIGGNDLTEAIARELG----------------I 225 (340)
T ss_dssp GGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEEE--EEEES-SHHHHHHHHHHHTT-----------------
T ss_pred HHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEEE--EEEEeeCHHHHHHHHHHhcC----------------C
Confidence 344331 13469999999999999999999883 45689999999999886531 3
Q ss_pred hHHHHHHHHHh
Q 007655 348 DLLMLNRIKES 358 (594)
Q Consensus 348 d~~l~e~lKe~ 358 (594)
++.-++++|..
T Consensus 226 ~~~~Ae~~k~~ 236 (340)
T PF11104_consen 226 DFEEAEELKRS 236 (340)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 45667777764
No 46
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=97.24 E-value=0.0018 Score=68.91 Aligned_cols=69 Identities=12% Similarity=0.185 Sum_probs=58.2
Q ss_pred cCCCeEEEeehhhHHhhhcCC-------------ceEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHHHHHHHHH
Q 007655 263 LRFASAVVHQEGLAAVFGNGL-------------STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQ 329 (594)
Q Consensus 263 ~~f~~v~~~~esvla~ygaG~-------------stg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit~~l~~lL 329 (594)
..|..|.+++|+++|.|.... ...+|||||+.+|.++-+.+|.+.......++.|..++-+.+.+.+
T Consensus 151 I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i 230 (344)
T PRK13917 151 INVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHI 230 (344)
T ss_pred EEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHH
Confidence 456789999999999876533 2459999999999999999998888877889999999999999888
Q ss_pred Hh
Q 007655 330 RH 331 (594)
Q Consensus 330 ~~ 331 (594)
+.
T Consensus 231 ~~ 232 (344)
T PRK13917 231 SK 232 (344)
T ss_pred Hh
Confidence 43
No 47
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=96.86 E-value=0.0056 Score=64.38 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCC--hHHHHHHHHHHHHh--------cCCCeEEEeehhhHHhhhc-
Q 007655 213 EDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFD--NREIKEMLSIVLRD--------LRFASAVVHQEGLAAVFGN- 281 (594)
Q Consensus 213 ~dle~iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~--~~~vr~l~ellfE~--------~~f~~v~~~~esvla~yga- 281 (594)
++...++.+++.. .+.+ +. ..|++-=|.. ..+.+++.+.+... +.+..|.+.+|++.|.|..
T Consensus 84 ~~~~~L~~~Al~~-~~~~--~~----~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~ 156 (320)
T TIGR03739 84 PEYMALLRGALAL-SKVR--EI----DQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFV 156 (320)
T ss_pred HHHHHHHHHHHHH-hcCC--CC----CEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHH
Confidence 4667788888843 3322 11 1233322221 22222355554432 5778899999999997754
Q ss_pred --------CCceEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHHhc
Q 007655 282 --------GLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHH 332 (594)
Q Consensus 282 --------G~stg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit~~l~~lL~~~ 332 (594)
.....+|||||+.+|.++-+.++.+.......++.|-.++.+.+.+.+...
T Consensus 157 ~~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 215 (320)
T TIGR03739 157 AQHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKD 215 (320)
T ss_pred hcCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhh
Confidence 234579999999999998777777777777789999999999999888643
No 48
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.10 E-value=0.32 Score=50.46 Aligned_cols=79 Identities=18% Similarity=0.331 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEeehhhHH--hhh-----cCC-ce---EEEEEeCCCceEEEEeeCCeeccCCcEEecch
Q 007655 249 NREIKEMLSIVLRDLRFASAVVHQEGLAA--VFG-----NGL-ST---ACVVNMGAQVTSVICVEDGVALPNTEKTLPFG 317 (594)
Q Consensus 249 ~~~vr~l~ellfE~~~f~~v~~~~esvla--~yg-----aG~-st---g~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~G 317 (594)
++++-+--.-.|+.-|+....+=-++.+. +|. .|. +. ..|+|||+..|+++-+.+|.++. .+..++|
T Consensus 147 rkE~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly--~r~~~~g 224 (354)
T COG4972 147 RKEVVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILY--TREVPVG 224 (354)
T ss_pred ehhhhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeee--EeeccCc
Confidence 34433444456788888777766666554 333 122 22 35999999999999999999985 3679999
Q ss_pred HHHHHHHHHHHH
Q 007655 318 GEDISRCLLWTQ 329 (594)
Q Consensus 318 G~dit~~l~~lL 329 (594)
|+++|+.+.+.+
T Consensus 225 ~~Qlt~~i~r~~ 236 (354)
T COG4972 225 TDQLTQEIQRAY 236 (354)
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
No 49
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=95.65 E-value=0.0037 Score=59.88 Aligned_cols=80 Identities=21% Similarity=0.233 Sum_probs=66.2
Q ss_pred HHhcCCCeEEEeehhhHHhhhcCCceEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHHhcCCCCCcc
Q 007655 260 LRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIR 339 (594)
Q Consensus 260 fE~~~f~~v~~~~esvla~ygaG~stg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit~~l~~lL~~~~~~p~~~ 339 (594)
+|+-|...++++.|+.+|++-.++..|.|||+|.++|-|+-|.+|-++..+ --+-||.++|-.|. ++
T Consensus 116 iESAGlevl~vlDEPTAaa~vL~l~dg~VVDiGGGTTGIsi~kkGkViy~A--DEpTGGtHmtLvlA------G~----- 182 (277)
T COG4820 116 IESAGLEVLHVLDEPTAAADVLQLDDGGVVDIGGGTTGISIVKKGKVIYSA--DEPTGGTHMTLVLA------GN----- 182 (277)
T ss_pred ecccCceeeeecCCchhHHHHhccCCCcEEEeCCCcceeEEEEcCcEEEec--cCCCCceeEEEEEe------cc-----
Confidence 588899999999999999999999999999999999999999999998654 36789988874443 21
Q ss_pred cccccchhhHHHHHHHHH
Q 007655 340 TDILTKAMDLLMLNRIKE 357 (594)
Q Consensus 340 ~~~l~~~~d~~l~e~lKe 357 (594)
...+++-+|+.|.
T Consensus 183 -----ygi~~EeAE~~Kr 195 (277)
T COG4820 183 -----YGISLEEAEQYKR 195 (277)
T ss_pred -----cCcCHhHHHHhhh
Confidence 1356777888874
No 50
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=95.51 E-value=0.021 Score=62.13 Aligned_cols=110 Identities=16% Similarity=0.201 Sum_probs=71.2
Q ss_pred cHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHHHHHHHH---HHhcCCCeEEEeehhhHHhhhcCC----
Q 007655 211 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIV---LRDLRFASAVVHQEGLAAVFGNGL---- 283 (594)
Q Consensus 211 ~~~dle~iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~vr~l~ell---fE~~~f~~v~~~~esvla~ygaG~---- 283 (594)
|-+.++.|.+.-| ++-++.+++-.. ..++|+-..-..+..++.++-+ ..+|=+...-+--+++++.+|+|.
T Consensus 64 D~~~i~~~V~~ey-~~Agi~~~die~-~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva~~ASg~avLs 141 (475)
T PRK10719 64 DEAAIKELIEEEY-QKAGIAPESIDS-GAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLS 141 (475)
T ss_pred cHHHHHHHHHHHH-HHcCCCHHHccc-cEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhhHHHhhHHHhh
Confidence 6788999999887 577888765432 1455554443333333433321 111222222333455566666663
Q ss_pred ----ceEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHHHH
Q 007655 284 ----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRC 324 (594)
Q Consensus 284 ----stg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit~~ 324 (594)
...|+||||+++|+++-..+|.++.. ..+++||++||.-
T Consensus 142 eEke~gVa~IDIGgGTT~iaVf~~G~l~~T--~~l~vGG~~IT~D 184 (475)
T PRK10719 142 EERNTRVLNIDIGGGTANYALFDAGKVIDT--ACLNVGGRLIETD 184 (475)
T ss_pred hhccCceEEEEeCCCceEEEEEECCEEEEE--EEEecccceEEEC
Confidence 46899999999999999999988743 5699999988863
No 51
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.27 Score=55.80 Aligned_cols=92 Identities=18% Similarity=0.264 Sum_probs=64.3
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC----------ceEEEEEeCCCceEEEEee------
Q 007655 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL----------STACVVNMGAQVTSVICVE------ 302 (594)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfE~~~f~~v~~~~esvla~ygaG~----------stg~VVDiG~~~TsV~pV~------ 302 (594)
+|+-+|+.|+..+.+.+++- -+-.|..-++++.+..+++..+|. ..-+|-|+|+++|+.+-|.
T Consensus 161 ~ViTVP~~F~qaeR~all~A-a~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~ 239 (902)
T KOG0104|consen 161 MVITVPPFFNQAERRALLQA-AQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKT 239 (902)
T ss_pred eEEeCCcccCHHHHHHHHHH-HHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeecc
Confidence 48888888887765544433 244578888999999999877664 3579999999999999884
Q ss_pred --CCeecc-----CCcEEecchHHHHHHHHHHHHHh
Q 007655 303 --DGVALP-----NTEKTLPFGGEDISRCLLWTQRH 331 (594)
Q Consensus 303 --dG~vl~-----~s~~~l~~GG~dit~~l~~lL~~ 331 (594)
.|..++ ...-...+||..+|..|...|..
T Consensus 240 k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~ 275 (902)
T KOG0104|consen 240 KEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLAN 275 (902)
T ss_pred ccccCccceEEEEeeccCCccchHHHHHHHHHHHHH
Confidence 221111 11123467899999998877653
No 52
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.13 Score=57.82 Aligned_cols=89 Identities=19% Similarity=0.308 Sum_probs=66.0
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCCc-------eEEEEEeCCCceEEEEee--CCe-ecc
Q 007655 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-------TACVVNMGAQVTSVICVE--DGV-ALP 308 (594)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfE~~~f~~v~~~~esvla~ygaG~s-------tg~VVDiG~~~TsV~pV~--dG~-vl~ 308 (594)
+|+.+|..|+... |+.+.-.-...|++.+-++.++.||+.++|.. +-||.|.|+.+..|+.+. +|+ .+.
T Consensus 146 aviTVPa~F~~~Q-r~at~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vk 224 (620)
T KOG0101|consen 146 AVVTVPAYFNDSQ-RAATKDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVK 224 (620)
T ss_pred EEEEecCCcCHHH-HHHHHHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhh
Confidence 5776766676654 45666666778999999999999998887743 459999999999888873 554 233
Q ss_pred CCcEEecchHHHHHHHHHHH
Q 007655 309 NTEKTLPFGGEDISRCLLWT 328 (594)
Q Consensus 309 ~s~~~l~~GG~dit~~l~~l 328 (594)
.+..-.++||.++++.|...
T Consensus 225 at~gd~~lGGedf~~~l~~h 244 (620)
T KOG0101|consen 225 ATAGDTHLGGEDFDNKLVNH 244 (620)
T ss_pred hhcccccccchhhhHHHHHH
Confidence 34455789999988887653
No 53
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=93.93 E-value=0.25 Score=52.23 Aligned_cols=111 Identities=17% Similarity=0.265 Sum_probs=67.3
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC------ceEEEEEeCCCceEEE--EeeCCeec-cC
Q 007655 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------STACVVNMGAQVTSVI--CVEDGVAL-PN 309 (594)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfE~~~f~~v~~~~esvla~ygaG~------stg~VVDiG~~~TsV~--pV~dG~vl-~~ 309 (594)
+|+-+|..|+..+ |+.+.=.=---|..-+-++.++.+|+.++|+ .+-+|.|.|.++-.|+ -+++|.-- -.
T Consensus 175 AVvTvPAYFNDAQ-rQATKDAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVla 253 (663)
T KOG0100|consen 175 AVVTVPAYFNDAQ-RQATKDAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLA 253 (663)
T ss_pred eEEecchhcchHH-HhhhcccceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEe
Confidence 5777777776544 3333222222466678899999999887775 4689999999986654 45677521 11
Q ss_pred CcEEecchHHHHHHHH----HHHHHhcCCCCCcccccccchhhHHHHHHHHHh
Q 007655 310 TEKTLPFGGEDISRCL----LWTQRHHQTWPQIRTDILTKAMDLLMLNRIKES 358 (594)
Q Consensus 310 s~~~l~~GG~dit~~l----~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~ 358 (594)
+---..+||.|.++.. .++..++.. .++ +-|...+..|+..
T Consensus 254 TnGDThLGGEDFD~rvm~~fiklykkK~g------kDv--~kdnkA~~KLrRe 298 (663)
T KOG0100|consen 254 TNGDTHLGGEDFDQRVMEYFIKLYKKKHG------KDV--RKDNKAVQKLRRE 298 (663)
T ss_pred cCCCcccCccchHHHHHHHHHHHHhhhcC------Ccc--chhhHHHHHHHHH
Confidence 2234578998877654 444433321 122 3455566666654
No 54
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=91.73 E-value=0.24 Score=52.01 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=51.1
Q ss_pred hcCCCeEEEeehhhHHhhhc-----CCceEEEEEeCCCceEEEEeeCCeeccC-CcEEecchHHHHHHHHHHHHHh
Q 007655 262 DLRFASAVVHQEGLAAVFGN-----GLSTACVVNMGAQVTSVICVEDGVALPN-TEKTLPFGGEDISRCLLWTQRH 331 (594)
Q Consensus 262 ~~~f~~v~~~~esvla~yga-----G~stg~VVDiG~~~TsV~pV~dG~vl~~-s~~~l~~GG~dit~~l~~lL~~ 331 (594)
.+.+..|.+.+|+++|.|.. ...+.+|||||+.+|.++-|.++..... +....+.|-..+.+.+.+.|..
T Consensus 137 ~i~I~~V~V~PQ~~~A~~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~ 212 (318)
T PF06406_consen 137 TITIKDVEVFPQSVGAVFDALMDLDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRS 212 (318)
T ss_dssp --EEEEEEEEESSHHHHHHHHHTS-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred eEEEeeEEEEcccHHHHHHHHHhhcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHH
Confidence 34577999999999998874 2357899999999999998887764433 3345688999999999988754
No 55
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=89.63 E-value=1.6 Score=47.83 Aligned_cols=116 Identities=19% Similarity=0.243 Sum_probs=82.5
Q ss_pred EEcceec-CeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCC---C
Q 007655 191 IHRPIRR-GHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRF---A 266 (594)
Q Consensus 191 l~~Pi~~-G~~n~~~~~s~~~~~~dle~iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~vr~l~ellfE~~~f---~ 266 (594)
.+.|+.. +.+ |-+.+++|.+.-| ++-++.|++-. --+|+++-..-.+..-+++++.|=+..|= .
T Consensus 50 ~fTPl~~~~~I----------D~~al~~iv~~eY-~~Agi~p~~I~-TGAVIITGETArKeNA~~v~~~Ls~~aGDFVVA 117 (473)
T PF06277_consen 50 YFTPLLSQTEI----------DAEALKEIVEEEY-RKAGITPEDID-TGAVIITGETARKENAREVLHALSGFAGDFVVA 117 (473)
T ss_pred cccCCCCCCcc----------CHHHHHHHHHHHH-HHcCCCHHHCc-cccEEEecchhhhhhHHHHHHHHHHhcCCEEEE
Confidence 3557775 444 6789999999998 67889887642 22788887766555555677777654442 1
Q ss_pred eEEEeehhhHHhhhcCC--------ceEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHH
Q 007655 267 SAVVHQEGLAAVFGNGL--------STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGED 320 (594)
Q Consensus 267 ~v~~~~esvla~ygaG~--------stg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~d 320 (594)
.-----||++|..|+|. .+-+=+|||.++|.++-..+|.++..+ .+++||+.
T Consensus 118 TAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G~v~~T~--cl~IGGRL 177 (473)
T PF06277_consen 118 TAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNGEVIDTA--CLDIGGRL 177 (473)
T ss_pred ccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECCEEEEEE--EEeeccEE
Confidence 11112489999999984 234557999999999999999999654 59999984
No 56
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=86.32 E-value=3.8 Score=41.86 Aligned_cols=89 Identities=17% Similarity=0.179 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC----ce-EEEEEeCCCceEEEEee-CCeeccCCcEEecchHHHHHHHH
Q 007655 252 IKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL----ST-ACVVNMGAQVTSVICVE-DGVALPNTEKTLPFGGEDISRCL 325 (594)
Q Consensus 252 vr~l~ellfE~~~f~~v~~~~esvla~ygaG~----st-g~VVDiG~~~TsV~pV~-dG~vl~~s~~~l~~GG~dit~~l 325 (594)
.+++.+.|=+.+|++.-.-.-|+-+|..|+=. .. -.|+|+|+++|..+-+. ||.+. .+++-=+|+-+|-.+
T Consensus 97 M~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v~---~iHlAGAG~mVTmlI 173 (332)
T PF08841_consen 97 MQMIADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEVT---AIHLAGAGNMVTMLI 173 (332)
T ss_dssp CHHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-EE---EEEEE-SHHHHHHHH
T ss_pred HHHHHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcEE---EEEecCCchhhHHHH
Confidence 34688888899999999999999999999843 33 57899999999988884 56553 456677788888777
Q ss_pred HHHHHhcCCCCCcccccccchhhHHHHHHHHHh
Q 007655 326 LWTQRHHQTWPQIRTDILTKAMDLLMLNRIKES 358 (594)
Q Consensus 326 ~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~ 358 (594)
..-| + | .|+.++|+||+.
T Consensus 174 ~sEL---G---------l---~d~~lAE~IKky 191 (332)
T PF08841_consen 174 NSEL---G---------L---EDRELAEDIKKY 191 (332)
T ss_dssp HHHC---T-------------S-HHHHHHHHHS
T ss_pred HHhh---C---------C---CCHHHHHHhhhc
Confidence 6543 2 1 378899999974
No 57
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=86.27 E-value=3.3 Score=36.80 Aligned_cols=59 Identities=22% Similarity=0.261 Sum_probs=39.6
Q ss_pred EEEEeCCCceEEEEeeCCeeccCCcEEecch--------HHHHH--HHHHHHHHhcCCCCCcccccccchhhHHHHHHH-
Q 007655 287 CVVNMGAQVTSVICVEDGVALPNTEKTLPFG--------GEDIS--RCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRI- 355 (594)
Q Consensus 287 ~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~G--------G~dit--~~l~~lL~~~~~~p~~~~~~l~~~~d~~l~e~l- 355 (594)
++||+|+++|.++-..+|.... ...+++| |.+|| +-+.+-++. ....+|++
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~--~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~----------------a~~~AE~~~ 63 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGY--IRVLGVGEVPSKGIKGGHITDIEDISKAIKI----------------AIEEAERLA 63 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEE--EEEES----------HHHHH--HHHHHHHT------------------HHHHHHH-
T ss_pred EEEEcCCCcEEEEEEEeCCCCc--EEEEEEecccccccCCCEEEEHHHHHHHHHH----------------HHHHHHHHh
Confidence 7899999999999888876654 5679999 99999 777766532 13457777
Q ss_pred HHhccccc
Q 007655 356 KESYCEIK 363 (594)
Q Consensus 356 Ke~~c~v~ 363 (594)
|.++..+.
T Consensus 64 k~~i~~v~ 71 (120)
T PF14450_consen 64 KCEIGSVY 71 (120)
T ss_dssp HHHH--S-
T ss_pred CCeeeEEE
Confidence 77765443
No 58
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=83.57 E-value=2.3 Score=43.81 Aligned_cols=70 Identities=17% Similarity=0.317 Sum_probs=48.5
Q ss_pred HHHHHHHHhcCCCeEEEee---hhhHHhh----hc-CCceEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHHHHH
Q 007655 254 EMLSIVLRDLRFASAVVHQ---EGLAAVF----GN-GLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 325 (594)
Q Consensus 254 ~l~ellfE~~~f~~v~~~~---esvla~y----ga-G~stg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit~~l 325 (594)
++++.+.+..|++ +-++. |+-++.. +. ....++|||||.++|.++.+.+|.+.. ...+++|.-.+++.+
T Consensus 75 ~~~~~i~~~tGi~-i~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~~--~~Sl~lG~vrl~e~~ 151 (285)
T PF02541_consen 75 EFLDRIKKETGID-IEIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVVF--SQSLPLGAVRLTERF 151 (285)
T ss_dssp HHHHHHHHHHSS--EEEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEEE--EEEES--HHHHHHHH
T ss_pred HHHHHHHHHhCCc-eEEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeeeE--eeeeehHHHHHHHHH
Confidence 4777778888875 43433 2333222 22 556899999999999999999999874 568999999888876
Q ss_pred H
Q 007655 326 L 326 (594)
Q Consensus 326 ~ 326 (594)
.
T Consensus 152 ~ 152 (285)
T PF02541_consen 152 F 152 (285)
T ss_dssp S
T ss_pred h
Confidence 4
No 59
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=82.05 E-value=1.6 Score=45.25 Aligned_cols=32 Identities=34% Similarity=0.434 Sum_probs=23.3
Q ss_pred Hhh-hcCCceEEEEEeCCCceEEEEeeCCeecc
Q 007655 277 AVF-GNGLSTACVVNMGAQVTSVICVEDGVALP 308 (594)
Q Consensus 277 a~y-gaG~stg~VVDiG~~~TsV~pV~dG~vl~ 308 (594)
+.| -.|..++++||||..+|.|++|.||.+..
T Consensus 69 a~~~~~g~~~~i~vDmGGTTtDi~~i~~G~p~~ 101 (290)
T PF01968_consen 69 AAARLTGLENAIVVDMGGTTTDIALIKDGRPEI 101 (290)
T ss_dssp HHH--HT-SSEEEEEE-SS-EEEEEEETTEE--
T ss_pred hhhhcCCCCCEEEEeCCCCEEEEEEEECCeeec
Confidence 345 55788999999999999999999999863
No 60
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=81.87 E-value=11 Score=42.95 Aligned_cols=116 Identities=19% Similarity=0.267 Sum_probs=78.8
Q ss_pred hcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCC------
Q 007655 210 QVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------ 283 (594)
Q Consensus 210 ~~~~dle~iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~vr~l~ellfE~~~f~~v~~~~esvla~ygaG~------ 283 (594)
+.+..+-.=+..+-.+.|.-+-.| ||+-+|..|...+.|-+++.. ...|+.-+-++.+..+++.++|.
T Consensus 116 Qv~Am~l~klk~~ae~~l~~~v~D-----cvIavP~~FTd~qRravldAA-~iagLn~lrLmnd~TA~Al~ygiyKtDLP 189 (727)
T KOG0103|consen 116 QVLAMLLTKLKATAEKNLKSPVSD-----CVIAVPSYFTDSQRRAVLDAA-RIAGLNPLRLMNDTTATALAYGIYKTDLP 189 (727)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCC-----eeEeccccccHHHHHHHHhHH-hhcCccceeeeecchHhHhhcccccccCC
Confidence 345554444444445555533333 678888888877766666554 56799999999999998888774
Q ss_pred ------ceEEEEEeCCCceEEEEee--CCeec-cCCcEEecchHHHHHHHHHHHHHh
Q 007655 284 ------STACVVNMGAQVTSVICVE--DGVAL-PNTEKTLPFGGEDISRCLLWTQRH 331 (594)
Q Consensus 284 ------stg~VVDiG~~~TsV~pV~--dG~vl-~~s~~~l~~GG~dit~~l~~lL~~ 331 (594)
.+-..||+||+.++++-+- -|..- -.+..--.+||++.++.|.+....
T Consensus 190 ~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~ 246 (727)
T KOG0103|consen 190 ENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALIDHFAK 246 (727)
T ss_pred CcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHHHHHHHH
Confidence 2368899999999887652 34322 223334579999999999876644
No 61
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=80.35 E-value=11 Score=39.65 Aligned_cols=90 Identities=21% Similarity=0.320 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCcccceeeecCC---CCChHH--HHHHHHHHHHhcCCCeEEEeeh-h------------
Q 007655 213 EDLYAIWDWILTEKLHIPRSERNLYSAILVLPE---SFDNRE--IKEMLSIVLRDLRFASAVVHQE-G------------ 274 (594)
Q Consensus 213 ~dle~iw~~~l~~~L~i~~~d~~~y~~VLvip~---~~~~~~--vr~l~ellfE~~~f~~v~~~~e-s------------ 274 (594)
+.|...+..++. .+... ..+ +|.++-. .|..+. |+.+++.+-+.|+-+ +++.+. .
T Consensus 36 ~~L~~~l~~~~~-~~~~~-~~~----avtMTgELaD~f~~r~~GV~~i~~~~~~~~~~~-~~i~~s~GG~~s~~~a~~~p 108 (318)
T TIGR03123 36 DKLAETLKEISQ-DLSSA-DNV----AVTMTGELADCFEDKAEGVEFILAAVESAFGSP-VSVFASDGGFVSAEEALTNP 108 (318)
T ss_pred hHHHHHHHHHHH-hcCcc-ceE----EEEeehhhhhhhcCHHHHHHHHHHHHHHhcCCC-eEEEecCCCCccHHHHHHhH
Confidence 456666666663 34321 223 6777754 454433 566788888888653 444321 1
Q ss_pred --------hH--HhhhcCCceEEEEEeCCCceEEEEeeCCeeccC
Q 007655 275 --------LA--AVFGNGLSTACVVNMGAQVTSVICVEDGVALPN 309 (594)
Q Consensus 275 --------vl--a~ygaG~stg~VVDiG~~~TsV~pV~dG~vl~~ 309 (594)
++ +..+.....++++|||.++|.|++|.+|.+...
T Consensus 109 v~~~~Sg~~a~A~~la~~~~~~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 109 LDVAAANWLATAQLIAKRIPECLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred HHHHHhhHHHHHHHHHhcCCCEEEEEcCccceeeEEecCCEeeee
Confidence 11 122234578999999999999999999998753
No 62
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=64.01 E-value=2 Score=44.42 Aligned_cols=67 Identities=15% Similarity=0.184 Sum_probs=46.4
Q ss_pred CHHHHHHHHHhccCChhHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeec
Q 007655 471 GLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLG 550 (594)
Q Consensus 471 ~L~~~I~~sI~~~~~~d~r~~L~~nIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla 550 (594)
||+++|.+-+... --|..+-..|+++||.++-+|+...|+++|.. +|.++ +.+|++..=+||+++|
T Consensus 221 Gl~~sia~rv~~~---~~~~~i~~~v~~~GGva~N~~l~~al~~~Lg~---------~v~~~--p~~p~~~GAlGAAL~A 286 (293)
T TIGR03192 221 AYCQAMAERVVSL---LERIGVEEGFFITGGIAKNPGVVKRIERILGI---------KAVDT--KIDSQIAGALGAALFG 286 (293)
T ss_pred HHHHHHHHHHHHH---hcccCCCCCEEEECcccccHHHHHHHHHHhCC---------CceeC--CCCccHHHHHHHHHHH
Confidence 5666665544322 11234556799999999999999999998853 23323 2468888889999887
Q ss_pred c
Q 007655 551 I 551 (594)
Q Consensus 551 ~ 551 (594)
.
T Consensus 287 ~ 287 (293)
T TIGR03192 287 Y 287 (293)
T ss_pred H
Confidence 3
No 63
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=63.28 E-value=3.1 Score=44.73 Aligned_cols=53 Identities=11% Similarity=0.219 Sum_probs=39.7
Q ss_pred HHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeec
Q 007655 491 KLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLG 550 (594)
Q Consensus 491 ~L~~nIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla 550 (594)
.+-..|+++||.++-+|+...|++.|....+.. +|.| +.+|++..=+||+++|
T Consensus 380 ~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~----~V~V---p~~pq~~GALGAAL~a 432 (432)
T TIGR02259 380 GITDQFTFTGGVAKNEAAVKELRKLIKENYGEV----QINI---DPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCCEEEECCccccHHHHHHHHHHHccccCCC----eEec---CCCccHHHHHHHHHhC
Confidence 345689999999999999999999996543211 2343 3478888888888765
No 64
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=62.44 E-value=2.9 Score=42.62 Aligned_cols=50 Identities=26% Similarity=0.434 Sum_probs=36.9
Q ss_pred cCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeec
Q 007655 494 CSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLG 550 (594)
Q Consensus 494 ~nIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla 550 (594)
.+|+++||.++-+|+...|+++|... . ..+.|.. +.+|++..=+||+++|
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~-~-----~~~~v~~-~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA-K-----MAVAAEN-HPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC-C-----cceEecC-CCcchHHHHHHHHHcC
Confidence 36999999999999999999999532 1 1233433 3478888888887764
No 65
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=58.78 E-value=82 Score=35.33 Aligned_cols=91 Identities=23% Similarity=0.302 Sum_probs=64.4
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHhhhcCCc-----eEEEEEeCCCceEEEE--eeCCeecc-CC
Q 007655 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVIC--VEDGVALP-NT 310 (594)
Q Consensus 239 ~VLvip~~~~~~~vr~l~ellfE~~~f~~v~~~~esvla~ygaG~s-----tg~VVDiG~~~TsV~p--V~dG~vl~-~s 310 (594)
.|+-+|..|+ ...|+.+.=+..-.|...+-++.++-+|+.+.|+. +-.|-|+|.++..|.- |++|...- .+
T Consensus 163 avvtvpAyfn-dsqRqaTkdag~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevksT 241 (640)
T KOG0102|consen 163 AVITVPAYFN-DSQRQATKDAGQIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVKST 241 (640)
T ss_pred eeeccHHHHh-HHHHHHhHhhhhhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEEec
Confidence 3554444444 34456666666777888899999999998888763 4689999998765543 46776543 23
Q ss_pred cEEecchHHHHHHHHHHHHH
Q 007655 311 EKTLPFGGEDISRCLLWTQR 330 (594)
Q Consensus 311 ~~~l~~GG~dit~~l~~lL~ 330 (594)
-...-.||.|++.++..++-
T Consensus 242 ngdtflggedfd~~~~~~~v 261 (640)
T KOG0102|consen 242 NGDTHLGGEDFDNALVRFIV 261 (640)
T ss_pred cCccccChhHHHHHHHHHHH
Confidence 45577899999999987654
No 66
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=58.61 E-value=2.7 Score=45.36 Aligned_cols=68 Identities=21% Similarity=0.263 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHhccCChhHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeee
Q 007655 470 IGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVL 549 (594)
Q Consensus 470 ~~L~~~I~~sI~~~~~~d~r~~L~~nIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIl 549 (594)
.||..+|.+-+... .-.+..+-+.|+++||.++.+|+...|++.|.. +|.|. .+|++..=+||+++
T Consensus 335 AGl~~SIa~rv~~~--l~~~~~i~~~VvftGGva~N~gvv~ale~~Lg~---------~iivP---e~pq~~GAiGAAL~ 400 (404)
T TIGR03286 335 AAACHSVAEQVYEQ--QLQEIDVREPVILVGGTSLIEGLVKALGDLLGI---------EVVVP---EYSQYIGAVGAALL 400 (404)
T ss_pred HHHHHHHHHHHHHH--HhhcCCCCCcEEEECChhhhHHHHHHHHHHhCC---------cEEEC---CcccHHHHHHHHHH
Confidence 35666666555420 011123445599999999999999999998852 34443 47889988999988
Q ss_pred cc
Q 007655 550 GI 551 (594)
Q Consensus 550 a~ 551 (594)
|+
T Consensus 401 A~ 402 (404)
T TIGR03286 401 AS 402 (404)
T ss_pred hc
Confidence 74
No 67
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=58.26 E-value=26 Score=35.46 Aligned_cols=46 Identities=33% Similarity=0.344 Sum_probs=37.7
Q ss_pred HhcCCCeEEEeehhhHHhhhcC-------CceEEEEEeCCCceEEEEeeCCeec
Q 007655 261 RDLRFASAVVHQEGLAAVFGNG-------LSTACVVNMGAQVTSVICVEDGVAL 307 (594)
Q Consensus 261 E~~~f~~v~~~~esvla~ygaG-------~stg~VVDiG~~~TsV~pV~dG~vl 307 (594)
...+... .+.....||.+|+= ....||||||-+.|-.+-|.+|.+.
T Consensus 138 ~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~ 190 (254)
T PF08735_consen 138 GGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIY 190 (254)
T ss_pred ccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEE
Confidence 3444444 89999999998874 3578999999999999999999876
No 68
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=57.99 E-value=14 Score=41.28 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=33.5
Q ss_pred eEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHHHHHH
Q 007655 285 TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLL 326 (594)
Q Consensus 285 tg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit~~l~ 326 (594)
.++|||||.++|.++.+.+|.+. ....+++|.--+++.|.
T Consensus 133 ~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG~vrl~e~f~ 172 (496)
T PRK11031 133 QRLVVDIGGASTELVTGTGAQAT--SLFSLSMGCVTWLERYF 172 (496)
T ss_pred CEEEEEecCCeeeEEEecCCcee--eeeEEeccchHHHHHhc
Confidence 58999999999999999998876 44689999988776543
No 69
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=57.78 E-value=10 Score=39.41 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=34.1
Q ss_pred eEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHHHHHH
Q 007655 285 TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLL 326 (594)
Q Consensus 285 tg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit~~l~ 326 (594)
.++|||+|.++|.++.+.+|.+. ....+++|.-.+++.|.
T Consensus 126 ~~~v~DiGGGSte~~~~~~~~~~--~~~Sl~lG~vrl~e~f~ 165 (300)
T TIGR03706 126 DGLVVDIGGGSTELILGKDFEPG--EGVSLPLGCVRLTEQFF 165 (300)
T ss_pred CcEEEEecCCeEEEEEecCCCEe--EEEEEccceEEhHHhhC
Confidence 46999999999999999988766 44689999988887764
No 70
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=55.34 E-value=8.1 Score=39.01 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCceEEEEeeCCee
Q 007655 284 STACVVNMGAQVTSVICVEDGVA 306 (594)
Q Consensus 284 stg~VVDiG~~~TsV~pV~dG~v 306 (594)
.+++.||+|+.+|.|+||-+|..
T Consensus 130 dsci~VD~GSTTtDIIPi~~ge~ 152 (330)
T COG1548 130 DSCILVDMGSTTTDIIPIKDGEA 152 (330)
T ss_pred CceEEEecCCcccceEeecchhh
Confidence 57999999999999999999973
No 71
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=46.76 E-value=14 Score=41.34 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=32.4
Q ss_pred CceEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHHHHHH
Q 007655 283 LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLL 326 (594)
Q Consensus 283 ~stg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit~~l~ 326 (594)
...+||+|||.++|.++=+.+..+. ....+++|.--+|+.+.
T Consensus 128 ~~~~lv~DIGGGStEl~~g~~~~~~--~~~Sl~~G~v~lt~~~~ 169 (492)
T COG0248 128 KGDGLVIDIGGGSTELVLGDNFEIG--LLISLPLGCVRLTERFF 169 (492)
T ss_pred CCCEEEEEecCCeEEEEEecCCccc--eeEEeecceEEeehhhc
Confidence 5679999999999999988765554 35678888776666554
No 72
>PRK13317 pantothenate kinase; Provisional
Probab=41.37 E-value=11 Score=38.95 Aligned_cols=73 Identities=21% Similarity=0.119 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHhccCChhHHHHHhcCeEEEc-CCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceee
Q 007655 470 IGLAEAVTSSILSTGRIDLQRKLFCSIQLIG-GVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAV 548 (594)
Q Consensus 470 ~~L~~~I~~sI~~~~~~d~r~~L~~nIvL~G-G~S~ipGf~eRL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSI 548 (594)
.+|..+|.+.|...+-.-.|..-..+|+++| |.+..|++.++|++.+... . .++.++ .+|++..=+||++
T Consensus 200 asl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~---~---~~~~~p---~~~~~~gAlGAaL 270 (277)
T PRK13317 200 AGVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIESYTKLR---N---CTPIFL---ENGGYSGAIGALL 270 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHHHHHhcC---C---ceEEec---CCCchhHHHHHHH
Confidence 3566666666654310112333347999999 6899999999999877531 0 123332 4788888889887
Q ss_pred ecc
Q 007655 549 LGI 551 (594)
Q Consensus 549 la~ 551 (594)
++.
T Consensus 271 ~a~ 273 (277)
T PRK13317 271 LAT 273 (277)
T ss_pred Hhh
Confidence 764
No 73
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=39.31 E-value=73 Score=33.56 Aligned_cols=107 Identities=20% Similarity=0.188 Sum_probs=68.8
Q ss_pred cHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHH---hcCCCeEEEeehhhHHhhhcCC----
Q 007655 211 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLR---DLRFASAVVHQEGLAAVFGNGL---- 283 (594)
Q Consensus 211 ~~~dle~iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~vr~l~ellfE---~~~f~~v~~~~esvla~ygaG~---- 283 (594)
+-+.++.+...-+ ..-++.|++.. .-+|+++-..-.++.-+..+..|-. +|=+..---.-||+.|--|+|.
T Consensus 63 d~~alk~~v~eeY-~~AGi~pesi~-sGAvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~S 140 (473)
T COG4819 63 DEAALKKLVLEEY-QAAGIAPESID-SGAVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLS 140 (473)
T ss_pred cHHHHHHHHHHHH-HHcCCChhccc-cccEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchh
Confidence 4677888887776 46788776532 2268887666544443444433332 2222222333477777777774
Q ss_pred --ceEEE--EEeCCCceEEEEeeCCeeccCCcEEecchHHHH
Q 007655 284 --STACV--VNMGAQVTSVICVEDGVALPNTEKTLPFGGEDI 321 (594)
Q Consensus 284 --stg~V--VDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~di 321 (594)
..+|| +|||.++|..+-.+-|.++..+ .+++||+-|
T Consensus 141 eqr~t~v~NlDIGGGTtN~slFD~Gkv~dTa--CLdiGGRLi 180 (473)
T COG4819 141 EQRLTRVLNLDIGGGTTNYSLFDAGKVSDTA--CLDIGGRLI 180 (473)
T ss_pred hhhceEEEEEeccCCccceeeecccccccce--eeecCcEEE
Confidence 23444 6899999999999999998655 499999843
No 74
>PRK10854 exopolyphosphatase; Provisional
Probab=38.66 E-value=33 Score=38.64 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=31.1
Q ss_pred ceEEEEEeCCCceEEEEeeCCeeccCCcEEecchHHHHHHHH
Q 007655 284 STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 325 (594)
Q Consensus 284 stg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~~GG~dit~~l 325 (594)
..++|||||.++|.++-+.+|.+.. ...+++|.--+++.+
T Consensus 137 ~~~lvvDIGGGStEl~~~~~~~~~~--~~S~~lG~vrl~e~f 176 (513)
T PRK10854 137 GRKLVIDIGGGSTELVIGENFEPIL--VESRRMGCVSFAQLY 176 (513)
T ss_pred CCeEEEEeCCCeEEEEEecCCCeeE--eEEEecceeeHHhhh
Confidence 3589999999999999999986553 345688877777643
No 75
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=36.63 E-value=11 Score=40.10 Aligned_cols=44 Identities=30% Similarity=0.350 Sum_probs=35.9
Q ss_pred eEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceeeecc
Q 007655 496 IQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGI 551 (594)
Q Consensus 496 IvL~GG~S~ipGf~eRL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSIla~ 551 (594)
|+++||+++..|+..-|++.|.. +|.++ ..+++.-=+||+++|+
T Consensus 346 iv~~GGva~n~av~~ale~~lg~---------~V~vP---~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLLGR---------KVIVP---PYAQLMGAIGAALIAK 389 (396)
T ss_pred EEEECcchhhHHHHHHHHHHhCC---------eeecC---CccchhhHHHHHHHHh
Confidence 99999999999999999998862 34443 4678888888888875
No 76
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.59 E-value=43 Score=39.00 Aligned_cols=31 Identities=32% Similarity=0.418 Sum_probs=25.3
Q ss_pred hhhcCCce--EEEEEeCCCceEEEEeeCCeecc
Q 007655 278 VFGNGLST--ACVVNMGAQVTSVICVEDGVALP 308 (594)
Q Consensus 278 ~ygaG~st--g~VVDiG~~~TsV~pV~dG~vl~ 308 (594)
+|=+|... ++++|||..+|.|+-+.+|.+..
T Consensus 270 a~ltg~~~g~~i~~DmGGTStDva~i~~G~pe~ 302 (674)
T COG0145 270 AYLTGLKAGNAIVFDMGGTSTDVALIIDGEPEI 302 (674)
T ss_pred HHhcccccCCEEEEEcCCcceeeeeeecCcEEe
Confidence 34446666 99999999999999999887653
No 77
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=31.52 E-value=28 Score=37.34 Aligned_cols=26 Identities=23% Similarity=0.186 Sum_probs=20.0
Q ss_pred hcCeEEEcCCCCcCChHHHHHHHHhh
Q 007655 493 FCSIQLIGGVALTGGLIPAVEERVLH 518 (594)
Q Consensus 493 ~~nIvL~GG~S~ipGf~eRL~~eL~~ 518 (594)
-..|+|+|||+.=+-|-++|++++..
T Consensus 285 ~~~v~v~GGGa~N~~L~~~L~~~l~~ 310 (364)
T PF03702_consen 285 PDEVYVCGGGARNPFLMERLQERLPG 310 (364)
T ss_dssp -EEEEEESGGGG-HHHHHHHHHH-TT
T ss_pred CceEEEECCCcCCHHHHHHHHhhCCC
Confidence 45799999999999999888888753
No 78
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=29.60 E-value=87 Score=31.40 Aligned_cols=100 Identities=15% Similarity=0.089 Sum_probs=58.9
Q ss_pred cHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHHh----hhcCCceE
Q 007655 211 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAV----FGNGLSTA 286 (594)
Q Consensus 211 ~~~dle~iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~vr~l~ellfE~~~f~~v~~~~esvla~----ygaG~stg 286 (594)
.|+.+.+.+..++ +++++++.+.. .|.++ -+.+.. + .|- + ..+.|-++-+ +-... ..
T Consensus 33 ~~~~~~~~l~~~~-~~~~~~~~~i~---~i~~T--g~~~~~----v--~~~--~----~~~~ei~~~~~g~~~~~~~-~~ 93 (248)
T TIGR00241 33 VIEETARAILEAL-KEAGIGLEPID---KIVAT--GYGRHK----V--GFA--D----KIVTEISCHGKGANYLAPE-AR 93 (248)
T ss_pred CHHHHHHHHHHHH-HHcCCChhhee---EEEEE--CCCccc----c--ccc--C----CceEEhhHHHHHHHHHCCC-CC
Confidence 6888888888887 56676655442 33332 222221 1 111 1 2345555533 33333 34
Q ss_pred EEEEeCCCceEEEEeeCCeeccCCc-EEecchHHHHHHHHHHHH
Q 007655 287 CVVNMGAQVTSVICVEDGVALPNTE-KTLPFGGEDISRCLLWTQ 329 (594)
Q Consensus 287 ~VVDiG~~~TsV~pV~dG~vl~~s~-~~l~~GG~dit~~l~~lL 329 (594)
.|||||++.|.+.-+.+|.+..-.. ....-|+...++.+...|
T Consensus 94 ~vidiGgqd~k~i~~~~g~~~~~~~n~~ca~Gtg~f~e~~a~~l 137 (248)
T TIGR00241 94 GVIDIGGQDSKVIKIDDGKVDDFTMNDKCAAGTGRFLEVTARRL 137 (248)
T ss_pred EEEEecCCeeEEEEECCCcEeeeeecCcccccccHHHHHHHHHc
Confidence 5999999999999999998763211 235667777777666544
No 79
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=27.57 E-value=63 Score=32.42 Aligned_cols=42 Identities=31% Similarity=0.437 Sum_probs=30.3
Q ss_pred CeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeEEeceee
Q 007655 495 SIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAV 548 (594)
Q Consensus 495 nIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~~~~V~v~~~~~dp~~~aW~GgSI 548 (594)
.|+++||++..+++.++|.+.|.. +|.+. .++++.+=+||++
T Consensus 206 ~Vvl~GGva~n~~l~~~l~~~lg~---------~v~~~---~~~~~~~AlGaAl 247 (248)
T TIGR00241 206 PIVFTGGVSKNKGLVKALEKKLGM---------KVITP---PEPQIVGAVGAAL 247 (248)
T ss_pred CEEEECccccCHHHHHHHHHHhCC---------cEEcC---CCccHHHHHHHHh
Confidence 799999999999999999998831 23332 3555555566654
No 80
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=26.59 E-value=1.9e+02 Score=31.43 Aligned_cols=101 Identities=16% Similarity=0.087 Sum_probs=54.3
Q ss_pred cHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCCCeEEEeehhhHH----hhhcC--Cc
Q 007655 211 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAA----VFGNG--LS 284 (594)
Q Consensus 211 ~~~dle~iw~~~l~~~L~i~~~d~~~y~~VLvip~~~~~~~vr~l~ellfE~~~f~~v~~~~esvla----~ygaG--~s 284 (594)
.-+..+.+++.++ ++.++...+.. .+.+| -|-+ .++..+| +...+ +.|-.|. .|=.. ..
T Consensus 177 ~~~~a~~~l~~~l-~~~Gl~~~di~---~i~~T--GyGR----~~i~~~~---~ad~i--v~EItaha~GA~~L~p~~~~ 241 (404)
T TIGR03286 177 VIESAEEAVERAL-EEAGVSLEDVE---AIGTT--GYGR----FTIGEHF---GADLI--QEELTVNSKGAVYLADKQEG 241 (404)
T ss_pred HHHHHHHHHHHHH-HHcCCCcccee---EEEee--eecH----HHHhhhc---CCCce--EEEEhhHHHHHHHhcccCCC
Confidence 3466788888888 46777655542 23333 2333 3333222 22222 2333332 23222 13
Q ss_pred eEEEEEeCCCceEEEEeeCCeeccCCcEEec-c--hHHHHHHHHHH
Q 007655 285 TACVVNMGAQVTSVICVEDGVALPNTEKTLP-F--GGEDISRCLLW 327 (594)
Q Consensus 285 tg~VVDiG~~~TsV~pV~dG~vl~~s~~~l~-~--GG~dit~~l~~ 327 (594)
...|+|||.|-+.+.-+.+|.+.. -+.+=. - +|+.|...-..
T Consensus 242 v~TIIDIGGQDsK~I~l~~G~v~d-F~MNdkCAAGTGrFLE~~A~~ 286 (404)
T TIGR03286 242 PATVIDIGGMDNKAISVWDGIPDN-FTMGGICAGASGRFLEMTAKR 286 (404)
T ss_pred CcEEEEeCCCceEEEEEcCCceee-EEEcCcccccCcHHHHHHHHH
Confidence 689999999999999998887642 122211 2 36666655443
No 81
>cd01732 LSm5 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm4 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=23.21 E-value=49 Score=27.06 Aligned_cols=12 Identities=33% Similarity=0.866 Sum_probs=10.8
Q ss_pred cCCCEEEEcCCC
Q 007655 16 RGSNLVVINPGS 27 (594)
Q Consensus 16 ~~~~~iVihpGS 27 (594)
||++|++||||.
T Consensus 65 RG~nV~~i~p~~ 76 (76)
T cd01732 65 NGNNICMLVPGG 76 (76)
T ss_pred eCCeEEEEECCC
Confidence 589999999995
No 82
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.19 E-value=1.3e+02 Score=30.70 Aligned_cols=40 Identities=30% Similarity=0.363 Sum_probs=32.9
Q ss_pred EEEeehhhHHhhhcCC----ceEEEEEeCCCceEEEEeeCCeec
Q 007655 268 AVVHQEGLAAVFGNGL----STACVVNMGAQVTSVICVEDGVAL 307 (594)
Q Consensus 268 v~~~~esvla~ygaG~----stg~VVDiG~~~TsV~pV~dG~vl 307 (594)
.+++..-.+|.+|+-. .-++|||+|.+.|..+-|.++.+.
T Consensus 207 av~mDskfaav~gal~dpaa~palvVd~GngHttaalvdedRI~ 250 (342)
T COG4012 207 AVAMDSKFAAVMGALVDPAADPALVVDYGNGHTTAALVDEDRIV 250 (342)
T ss_pred EEEEcchhHhhhhcccCcccCceEEEEccCCceEEEEecCCeEE
Confidence 5677778888888754 468999999999999999988654
No 83
>PRK03011 butyrate kinase; Provisional
Probab=21.34 E-value=54 Score=35.13 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCceEEEEeeCCeeccCC
Q 007655 284 STACVVNMGAQVTSVICVEDGVALPNT 310 (594)
Q Consensus 284 stg~VVDiG~~~TsV~pV~dG~vl~~s 310 (594)
.+.+|+.+|.+. +++.|.||.++..+
T Consensus 176 ~n~I~~hLGtGi-g~gai~~Gk~idgs 201 (358)
T PRK03011 176 LNLIVAHLGGGI-SVGAHRKGRVIDVN 201 (358)
T ss_pred CcEEEEEeCCCc-eeeEEECCEEEecC
Confidence 378999999975 89999999998654
No 84
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=21.07 E-value=2.3e+02 Score=28.59 Aligned_cols=84 Identities=15% Similarity=0.245 Sum_probs=52.5
Q ss_pred cHHHHHHHHHHHHhhhcCCCCCCCcccceeeecC----CCCChHHHH-HHHHHHHHhcCCCeEEEeehhhHHhhhcCCce
Q 007655 211 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLP----ESFDNREIK-EMLSIVLRDLRFASAVVHQEGLAAVFGNGLST 285 (594)
Q Consensus 211 ~~~dle~iw~~~l~~~L~i~~~d~~~y~~VLvip----~~~~~~~vr-~l~ellfE~~~f~~v~~~~esvla~ygaG~st 285 (594)
....+...++.++ ++++.++.+.. .+.+.- .......+. ++. .+ .+.+...+..+++++-. .
T Consensus 40 ~~~~i~~~i~~~~-~~~~~~~~~i~---~~~~g~aG~~~~~~~~~~~~~~~---~~-----~v~~~~Da~~al~~~~~-~ 106 (271)
T PF01869_consen 40 AMENIKEAIEEAL-SQAGLSPDDIA---AICIGAAGYGRAGDEQEFQEEIV---RS-----EVIVVNDAAIALYGATA-E 106 (271)
T ss_dssp HHHHHHHHHHHHH-HHHTTSTTCCC---EEEEEEEEEEETTTTTHHHHHHH---HH-----EEEEEEHHHHHHHHHST-S
T ss_pred hhhHHHHHHHHHH-HHcCCCccccc---eeeeeEeeecCcccccchhhcce---EE-----EEEEEHHHHHHhCCCCC-C
Confidence 3455667777777 56777766643 221111 112222221 222 12 89999999999998876 6
Q ss_pred EEEEEeCCCceEEEEee-CCeec
Q 007655 286 ACVVNMGAQVTSVICVE-DGVAL 307 (594)
Q Consensus 286 g~VVDiG~~~TsV~pV~-dG~vl 307 (594)
.-||+||.+.+.+.-+. +|.+.
T Consensus 107 ~giv~I~GTGS~~~~~~~~g~~~ 129 (271)
T PF01869_consen 107 DGIVVIAGTGSIAYGRDRDGRVI 129 (271)
T ss_dssp SEEEEEESSSEEEEEEETTSEEE
T ss_pred cEEEEEcCCCceEEEEEcCCcEE
Confidence 67888888887777777 77655
No 85
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=20.98 E-value=63 Score=33.73 Aligned_cols=14 Identities=29% Similarity=0.370 Sum_probs=11.3
Q ss_pred cCCC---EEEEcCCCce
Q 007655 16 RGSN---LVVINPGSAN 29 (594)
Q Consensus 16 ~~~~---~iVihpGS~~ 29 (594)
-|-+ .||||||+.+
T Consensus 142 lG~~~~~~vViHpG~~~ 158 (303)
T PRK02308 142 MGIDDSSKINIHVGGAY 158 (303)
T ss_pred CCCCCCCEEEECCCccC
Confidence 3666 9999999963
No 86
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=20.95 E-value=48 Score=35.90 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCceEEEEeeCCeeccCCc
Q 007655 284 STACVVNMGAQVTSVICVEDGVALPNTE 311 (594)
Q Consensus 284 stg~VVDiG~~~TsV~pV~dG~vl~~s~ 311 (594)
..-+|.-+|.+ +|+|.+.+|.++..+.
T Consensus 199 ~~lIvaHLG~G-~Sv~A~~~GrsvDtsm 225 (388)
T PF00871_consen 199 LNLIVAHLGSG-ASVCAIKNGRSVDTSM 225 (388)
T ss_dssp -EEEEEEESSS-EEEEEEETTEEEEESB
T ss_pred cCEEEEEeCCC-cEEEEEECCEEEEecC
Confidence 46788999998 7999999999987553
Done!