Query 007656
Match_columns 594
No_of_seqs 414 out of 4142
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 13:34:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007656.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007656hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 5.7E-42 1.2E-46 374.7 26.3 535 1-578 1-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 5.3E-29 1.2E-33 287.5 25.6 46 158-203 184-231 (1153)
3 PLN00113 leucine-rich repeat r 99.9 1.6E-22 3.5E-27 233.5 14.8 312 218-560 91-414 (968)
4 KOG0444 Cytoskeletal regulator 99.9 3.6E-24 7.7E-29 213.6 -2.9 312 191-560 55-372 (1255)
5 PLN00113 leucine-rich repeat r 99.9 6.7E-22 1.4E-26 228.5 15.2 111 218-332 162-273 (968)
6 PLN03210 Resistant to P. syrin 99.9 9.9E-22 2.1E-26 227.4 16.5 286 220-545 611-911 (1153)
7 KOG4194 Membrane glycoprotein 99.8 9.9E-23 2.1E-27 202.1 0.8 295 218-558 147-447 (873)
8 KOG4194 Membrane glycoprotein 99.8 4.2E-23 9.2E-28 204.7 -2.7 295 218-560 100-426 (873)
9 KOG0444 Cytoskeletal regulator 99.8 4.1E-22 8.9E-27 199.0 -2.3 276 218-545 101-380 (1255)
10 KOG0472 Leucine-rich repeat pr 99.8 6E-20 1.3E-24 174.9 -1.1 313 185-538 200-539 (565)
11 KOG0472 Leucine-rich repeat pr 99.7 1.6E-20 3.5E-25 178.7 -6.0 272 209-538 35-308 (565)
12 KOG0618 Serine/threonine phosp 99.7 1.6E-19 3.4E-24 188.8 -3.3 235 295-561 242-487 (1081)
13 KOG0618 Serine/threonine phosp 99.7 6.5E-18 1.4E-22 176.9 -2.3 188 351-560 257-462 (1081)
14 PRK15387 E3 ubiquitin-protein 99.6 9.1E-16 2E-20 165.7 10.1 75 444-538 382-456 (788)
15 PRK15387 E3 ubiquitin-protein 99.6 2.1E-15 4.5E-20 162.9 11.3 114 359-514 343-456 (788)
16 PRK15370 E3 ubiquitin-protein 99.5 7.8E-15 1.7E-19 159.5 8.8 244 221-538 179-426 (754)
17 KOG4237 Extracellular matrix p 99.5 2.6E-16 5.6E-21 150.2 -5.2 108 221-333 68-178 (498)
18 PRK15370 E3 ubiquitin-protein 99.5 2.9E-14 6.3E-19 155.1 6.8 227 220-514 199-426 (754)
19 KOG4658 Apoptotic ATPase [Sign 99.4 3.4E-14 7.3E-19 157.0 3.6 285 218-546 569-866 (889)
20 KOG0617 Ras suppressor protein 99.4 2.2E-15 4.8E-20 127.6 -4.9 154 219-398 32-187 (264)
21 KOG0617 Ras suppressor protein 99.4 8.8E-15 1.9E-19 124.0 -3.5 153 243-420 31-183 (264)
22 KOG4237 Extracellular matrix p 99.3 4.3E-14 9.3E-19 135.2 -5.7 115 207-331 84-200 (498)
23 cd00116 LRR_RI Leucine-rich re 99.3 1.7E-12 3.8E-17 130.6 4.0 166 241-421 19-204 (319)
24 KOG4341 F-box protein containi 99.2 7.2E-13 1.6E-17 127.9 -1.3 201 374-593 258-475 (483)
25 cd00116 LRR_RI Leucine-rich re 99.2 5.9E-12 1.3E-16 126.8 4.1 264 218-513 21-317 (319)
26 KOG0532 Leucine-rich repeat (L 99.2 1.5E-12 3.2E-17 130.3 -3.8 129 191-333 75-203 (722)
27 PF14580 LRR_9: Leucine-rich r 99.0 2.9E-10 6.3E-15 101.2 5.9 129 218-366 17-148 (175)
28 KOG4341 F-box protein containi 99.0 1.6E-11 3.4E-16 118.8 -3.6 294 221-544 139-443 (483)
29 KOG1259 Nischarin, modulator o 98.9 4.2E-10 9E-15 104.3 0.9 139 351-520 277-415 (490)
30 PF14580 LRR_9: Leucine-rich r 98.9 1.2E-09 2.7E-14 97.2 3.9 120 230-371 6-126 (175)
31 KOG3207 Beta-tubulin folding c 98.8 7.5E-10 1.6E-14 108.0 1.4 210 242-477 118-336 (505)
32 KOG0532 Leucine-rich repeat (L 98.8 3.9E-10 8.5E-15 113.3 -2.5 199 218-455 73-271 (722)
33 COG4886 Leucine-rich repeat (L 98.8 5.8E-09 1.2E-13 108.2 5.4 87 242-333 113-200 (394)
34 KOG1259 Nischarin, modulator o 98.8 1.1E-09 2.3E-14 101.7 -0.6 133 217-372 281-413 (490)
35 COG4886 Leucine-rich repeat (L 98.7 5.6E-09 1.2E-13 108.3 3.2 128 218-368 114-242 (394)
36 PF13855 LRR_8: Leucine rich r 98.7 1.4E-08 3E-13 74.2 3.6 59 271-330 1-60 (61)
37 KOG3207 Beta-tubulin folding c 98.7 5.7E-09 1.2E-13 101.9 1.5 218 285-536 112-335 (505)
38 KOG2120 SCF ubiquitin ligase, 98.6 1.6E-09 3.4E-14 100.6 -4.8 58 272-331 186-246 (419)
39 KOG0531 Protein phosphatase 1, 98.6 7.9E-09 1.7E-13 107.4 -0.4 243 218-514 70-316 (414)
40 KOG2120 SCF ubiquitin ligase, 98.6 3.7E-09 7.9E-14 98.2 -2.9 84 246-331 186-272 (419)
41 KOG1909 Ran GTPase-activating 98.5 2.6E-08 5.6E-13 94.8 1.7 82 219-304 29-130 (382)
42 PF13855 LRR_8: Leucine rich r 98.5 5.3E-08 1.2E-12 71.1 2.8 56 246-304 2-59 (61)
43 PLN03150 hypothetical protein; 98.5 3.9E-07 8.4E-12 99.3 8.5 105 222-331 420-527 (623)
44 PLN03150 hypothetical protein; 98.4 9.5E-07 2.1E-11 96.3 9.0 85 246-333 419-504 (623)
45 KOG1909 Ran GTPase-activating 98.4 1.3E-07 2.9E-12 90.1 1.8 225 241-477 26-280 (382)
46 KOG2982 Uncharacterized conser 98.3 1.8E-07 4E-12 87.1 2.1 103 248-368 48-156 (418)
47 PF00931 NB-ARC: NB-ARC domain 98.3 7.9E-07 1.7E-11 87.9 6.1 53 163-216 1-55 (287)
48 KOG0531 Protein phosphatase 1, 98.3 7.9E-08 1.7E-12 100.0 -1.7 241 242-538 69-316 (414)
49 PRK15386 type III secretion pr 98.2 4.8E-06 1E-10 83.5 9.7 62 243-312 50-112 (426)
50 PF12799 LRR_4: Leucine Rich r 98.2 1.5E-06 3.2E-11 58.1 4.1 40 272-312 2-41 (44)
51 KOG2982 Uncharacterized conser 98.2 5.7E-07 1.2E-11 83.9 2.3 104 362-475 177-287 (418)
52 KOG3665 ZYG-1-like serine/thre 98.1 1.6E-06 3.4E-11 94.4 2.4 110 219-332 121-233 (699)
53 KOG1859 Leucine-rich repeat pr 98.1 8.3E-08 1.8E-12 99.4 -7.1 127 219-369 163-290 (1096)
54 PF12799 LRR_4: Leucine Rich r 98.0 5.6E-06 1.2E-10 55.3 3.1 40 245-287 1-40 (44)
55 PRK15386 type III secretion pr 98.0 3.7E-05 8E-10 77.2 10.2 59 266-331 48-106 (426)
56 KOG4579 Leucine-rich repeat (L 97.9 5.1E-06 1.1E-10 68.7 1.7 90 219-313 52-141 (177)
57 KOG4579 Leucine-rich repeat (L 97.9 2.5E-06 5.4E-11 70.5 -0.5 107 222-333 29-137 (177)
58 KOG1859 Leucine-rich repeat pr 97.8 6.9E-07 1.5E-11 92.9 -5.4 161 158-332 122-292 (1096)
59 KOG3665 ZYG-1-like serine/thre 97.8 1.4E-05 3E-10 87.1 3.7 157 245-419 122-284 (699)
60 KOG1947 Leucine rich repeat pr 97.6 1.6E-05 3.5E-10 84.9 0.7 38 505-542 403-442 (482)
61 KOG1644 U2-associated snRNP A' 97.6 9.8E-05 2.1E-09 65.6 5.0 108 245-369 42-151 (233)
62 KOG1947 Leucine rich repeat pr 97.4 1E-05 2.2E-10 86.5 -4.3 242 293-566 187-443 (482)
63 KOG2123 Uncharacterized conser 97.2 3.6E-05 7.9E-10 71.4 -2.0 100 219-325 18-123 (388)
64 KOG2739 Leucine-rich acidic nu 97.2 0.00033 7.1E-09 65.0 3.5 107 218-330 41-154 (260)
65 KOG1644 U2-associated snRNP A' 97.1 0.00041 9E-09 61.7 3.1 103 222-330 44-151 (233)
66 KOG2123 Uncharacterized conser 97.0 6.4E-05 1.4E-09 69.9 -2.8 106 243-364 17-123 (388)
67 COG5238 RNA1 Ran GTPase-activa 96.9 0.0012 2.6E-08 61.4 4.7 169 243-421 28-225 (388)
68 KOG2739 Leucine-rich acidic nu 96.8 0.00065 1.4E-08 63.1 1.8 86 241-333 39-130 (260)
69 COG5238 RNA1 Ran GTPase-activa 96.6 0.0018 4E-08 60.2 3.2 190 218-422 28-254 (388)
70 PF00560 LRR_1: Leucine Rich R 96.2 0.0018 3.9E-08 35.9 0.7 18 273-290 2-19 (22)
71 PF13306 LRR_5: Leucine rich r 96.2 0.011 2.4E-07 50.2 5.9 101 218-328 10-112 (129)
72 PF13191 AAA_16: AAA ATPase do 95.7 0.01 2.2E-07 54.1 3.9 44 160-203 2-48 (185)
73 PF01637 Arch_ATPase: Archaeal 95.7 0.011 2.3E-07 56.2 4.1 44 160-203 1-44 (234)
74 PTZ00202 tuzin; Provisional 95.7 0.14 3E-06 52.1 11.6 48 156-203 260-310 (550)
75 KOG3864 Uncharacterized conser 95.6 0.0019 4E-08 57.7 -1.6 65 406-478 121-187 (221)
76 PF13306 LRR_5: Leucine rich r 95.5 0.023 5E-07 48.2 5.0 100 207-322 28-129 (129)
77 PF13504 LRR_7: Leucine rich r 95.4 0.0094 2E-07 30.6 1.3 16 272-287 2-17 (17)
78 KOG0473 Leucine-rich repeat pr 95.2 0.0016 3.4E-08 59.2 -3.2 95 233-332 30-124 (326)
79 PF00560 LRR_1: Leucine Rich R 94.8 0.012 2.6E-07 32.6 0.7 21 246-268 1-21 (22)
80 cd00009 AAA The AAA+ (ATPases 94.5 0.063 1.4E-06 46.4 5.2 43 161-203 1-43 (151)
81 TIGR02903 spore_lon_C ATP-depe 94.5 0.58 1.3E-05 51.2 13.4 46 158-203 154-199 (615)
82 PRK09376 rho transcription ter 94.5 0.039 8.4E-07 55.4 3.9 36 179-216 169-204 (416)
83 cd01128 rho_factor Transcripti 94.3 0.056 1.2E-06 51.6 4.5 37 178-216 15-51 (249)
84 PRK08118 topology modulation p 94.3 0.039 8.5E-07 49.3 3.2 38 180-217 2-39 (167)
85 TIGR02928 orc1/cdc6 family rep 94.1 0.083 1.8E-06 54.1 5.8 46 158-203 15-64 (365)
86 PF05496 RuvB_N: Holliday junc 93.9 0.12 2.5E-06 47.8 5.4 46 158-203 24-74 (233)
87 PF12061 DUF3542: Protein of u 93.8 0.18 3.9E-06 48.2 6.5 74 10-91 299-372 (402)
88 TIGR00635 ruvB Holliday juncti 93.8 0.077 1.7E-06 52.8 4.6 46 158-203 4-54 (305)
89 KOG3864 Uncharacterized conser 93.2 0.011 2.3E-07 53.0 -2.3 65 442-517 123-190 (221)
90 COG0466 Lon ATP-dependent Lon 93.2 1.5 3.2E-05 47.4 12.8 46 158-203 323-374 (782)
91 PF13504 LRR_7: Leucine rich r 93.1 0.065 1.4E-06 27.4 1.5 17 527-544 1-17 (17)
92 PF05659 RPW8: Arabidopsis bro 93.0 0.93 2E-05 39.2 9.3 109 5-130 7-115 (147)
93 PF13207 AAA_17: AAA domain; P 92.9 0.11 2.4E-06 43.4 3.6 23 181-203 1-23 (121)
94 PRK00411 cdc6 cell division co 92.8 0.19 4E-06 52.1 5.9 47 157-203 29-79 (394)
95 PRK06696 uridine kinase; Valid 92.8 0.2 4.3E-06 47.2 5.5 41 163-203 3-46 (223)
96 smart00763 AAA_PrkA PrkA AAA d 92.6 0.19 4E-06 50.2 5.1 46 158-203 51-102 (361)
97 PRK11331 5-methylcytosine-spec 92.4 0.44 9.6E-06 49.1 7.6 56 158-216 175-230 (459)
98 KOG0473 Leucine-rich repeat pr 92.2 0.0091 2E-07 54.5 -4.1 83 218-305 40-122 (326)
99 PRK00080 ruvB Holliday junctio 91.9 0.2 4.2E-06 50.5 4.5 46 158-203 25-75 (328)
100 PRK13342 recombination factor 91.7 0.17 3.6E-06 52.7 3.9 46 158-203 12-60 (413)
101 PRK07261 topology modulation p 91.7 0.19 4E-06 45.2 3.7 23 181-203 2-24 (171)
102 smart00370 LRR Leucine-rich re 91.5 0.18 3.9E-06 29.1 2.2 19 294-313 2-20 (26)
103 smart00369 LRR_TYP Leucine-ric 91.5 0.18 3.9E-06 29.1 2.2 19 294-313 2-20 (26)
104 PRK06547 hypothetical protein; 90.6 0.45 9.8E-06 42.7 5.0 36 168-203 4-39 (172)
105 COG2255 RuvB Holliday junction 90.1 0.44 9.6E-06 45.3 4.6 46 158-203 26-76 (332)
106 PRK07667 uridine kinase; Provi 90.1 0.5 1.1E-05 43.4 5.0 37 167-203 3-41 (193)
107 PF13238 AAA_18: AAA domain; P 90.0 0.31 6.7E-06 41.1 3.3 22 182-203 1-22 (129)
108 PRK12402 replication factor C 89.8 0.44 9.5E-06 48.1 4.8 46 158-203 15-60 (337)
109 PRK00440 rfc replication facto 89.7 0.47 1E-05 47.5 4.9 47 158-204 17-63 (319)
110 KOG2004 Mitochondrial ATP-depe 89.7 4.6 0.0001 43.7 12.0 46 158-203 411-462 (906)
111 PF00485 PRK: Phosphoribulokin 89.5 0.36 7.7E-06 44.4 3.6 23 181-203 1-23 (194)
112 smart00369 LRR_TYP Leucine-ric 89.2 0.3 6.6E-06 28.1 1.8 18 272-289 3-20 (26)
113 smart00370 LRR Leucine-rich re 89.2 0.3 6.6E-06 28.1 1.8 18 272-289 3-20 (26)
114 KOG0991 Replication factor C, 89.1 0.57 1.2E-05 43.2 4.3 46 158-203 27-72 (333)
115 PHA00729 NTP-binding motif con 88.6 0.76 1.7E-05 42.8 5.0 36 168-203 6-41 (226)
116 PRK05480 uridine/cytidine kina 88.4 0.52 1.1E-05 43.9 3.8 27 177-203 4-30 (209)
117 PRK12727 flagellar biosynthesi 88.3 4.6 0.0001 42.7 10.9 25 179-203 350-374 (559)
118 CHL00095 clpC Clp protease ATP 88.3 0.58 1.2E-05 53.3 4.8 46 158-203 179-224 (821)
119 PLN03025 replication factor C 88.3 0.74 1.6E-05 46.1 5.1 46 158-203 13-58 (319)
120 COG0572 Udk Uridine kinase [Nu 88.2 0.54 1.2E-05 43.3 3.7 27 177-203 6-32 (218)
121 COG3074 Uncharacterized protei 88.1 7.8 0.00017 27.9 8.4 74 14-87 6-79 (79)
122 PRK13341 recombination factor 88.0 0.68 1.5E-05 51.4 5.0 46 158-203 28-76 (725)
123 PHA02544 44 clamp loader, smal 87.9 0.68 1.5E-05 46.3 4.6 46 158-203 21-67 (316)
124 PRK09270 nucleoside triphospha 87.8 0.94 2E-05 42.8 5.2 27 177-203 31-57 (229)
125 COG2256 MGS1 ATPase related to 87.7 0.67 1.5E-05 46.4 4.2 50 159-211 25-77 (436)
126 PRK14955 DNA polymerase III su 87.7 0.8 1.7E-05 47.3 5.0 46 158-203 16-62 (397)
127 TIGR00767 rho transcription te 87.6 0.73 1.6E-05 46.8 4.5 37 178-216 167-203 (415)
128 COG1428 Deoxynucleoside kinase 87.5 0.58 1.3E-05 42.6 3.3 25 179-203 4-28 (216)
129 PRK15455 PrkA family serine pr 87.4 0.8 1.7E-05 48.6 4.8 46 158-203 76-127 (644)
130 TIGR00235 udk uridine kinase. 87.4 0.57 1.2E-05 43.5 3.5 26 178-203 5-30 (207)
131 PRK08233 hypothetical protein; 87.2 0.6 1.3E-05 42.2 3.5 25 179-203 3-27 (182)
132 COG1618 Predicted nucleotide k 87.1 0.59 1.3E-05 40.6 3.0 24 180-203 6-29 (179)
133 PRK10787 DNA-binding ATP-depen 86.6 3.2 6.9E-05 46.8 9.2 47 157-203 321-373 (784)
134 PRK04195 replication factor C 86.5 0.71 1.5E-05 49.1 4.0 46 158-203 14-63 (482)
135 TIGR00763 lon ATP-dependent pr 86.5 3.5 7.6E-05 46.7 9.7 46 158-203 320-371 (775)
136 PRK14961 DNA polymerase III su 86.4 1.1 2.3E-05 45.8 5.1 46 158-203 16-62 (363)
137 PTZ00301 uridine kinase; Provi 86.4 0.75 1.6E-05 42.7 3.6 25 179-203 3-27 (210)
138 PRK14962 DNA polymerase III su 86.4 1 2.3E-05 47.4 5.1 46 158-203 14-60 (472)
139 TIGR03345 VI_ClpV1 type VI sec 86.4 0.91 2E-05 51.7 5.0 46 158-203 187-232 (852)
140 TIGR02639 ClpA ATP-dependent C 86.3 0.93 2E-05 50.9 5.0 46 158-203 182-227 (731)
141 COG0542 clpA ATP-binding subun 86.1 19 0.00041 40.2 14.4 47 158-204 491-546 (786)
142 PF06309 Torsin: Torsin; Inte 85.7 2.2 4.7E-05 35.7 5.6 48 158-205 25-79 (127)
143 PF00158 Sigma54_activat: Sigm 85.5 1.7 3.6E-05 38.8 5.3 51 160-211 1-54 (168)
144 TIGR01242 26Sp45 26S proteasom 85.5 1.1 2.4E-05 45.7 4.8 46 158-203 122-180 (364)
145 KOG2028 ATPase related to the 85.4 0.8 1.7E-05 45.1 3.3 43 158-203 144-186 (554)
146 PRK14956 DNA polymerase III su 85.4 1.1 2.4E-05 46.8 4.5 47 158-204 18-65 (484)
147 TIGR03420 DnaA_homol_Hda DnaA 85.3 1.5 3.1E-05 41.4 5.2 41 163-203 22-62 (226)
148 PRK14957 DNA polymerase III su 85.3 1.1 2.5E-05 47.8 4.7 47 158-204 16-63 (546)
149 PRK06762 hypothetical protein; 85.3 0.89 1.9E-05 40.5 3.5 24 180-203 3-26 (166)
150 TIGR02030 BchI-ChlI magnesium 85.3 1.3 2.9E-05 44.3 5.0 46 158-203 4-49 (337)
151 PRK05896 DNA polymerase III su 84.8 1.3 2.7E-05 47.7 4.8 47 158-204 16-63 (605)
152 PRK13236 nitrogenase reductase 84.6 0.79 1.7E-05 45.3 3.0 29 175-203 2-30 (296)
153 PRK03992 proteasome-activating 84.6 1.2 2.6E-05 45.9 4.5 46 158-203 131-189 (389)
154 TIGR02881 spore_V_K stage V sp 84.5 1.5 3.4E-05 42.3 5.0 45 159-203 7-66 (261)
155 PRK10865 protein disaggregatio 84.4 1.3 2.8E-05 50.6 5.0 46 158-203 178-223 (857)
156 cd02019 NK Nucleoside/nucleoti 84.4 0.97 2.1E-05 33.4 2.7 23 181-203 1-23 (69)
157 PRK14963 DNA polymerase III su 84.2 1.4 3.1E-05 46.8 4.9 47 158-204 14-61 (504)
158 PRK14954 DNA polymerase III su 84.0 1.4 3E-05 48.0 4.7 47 158-204 16-63 (620)
159 TIGR00073 hypB hydrogenase acc 83.8 1.3 2.9E-05 41.0 4.1 32 172-203 15-46 (207)
160 smart00364 LRR_BAC Leucine-ric 83.8 0.65 1.4E-05 26.6 1.2 17 272-288 3-19 (26)
161 PRK12726 flagellar biosynthesi 83.8 21 0.00045 36.3 12.4 26 178-203 205-230 (407)
162 TIGR03015 pepcterm_ATPase puta 83.7 1.6 3.5E-05 42.4 4.8 36 168-203 29-67 (269)
163 PF05729 NACHT: NACHT domain 83.7 1 2.2E-05 39.8 3.1 24 180-203 1-24 (166)
164 PF03205 MobB: Molybdopterin g 83.6 1.3 2.8E-05 38.2 3.6 25 180-204 1-25 (140)
165 PRK14958 DNA polymerase III su 83.6 1.4 3.1E-05 46.9 4.6 47 158-204 16-63 (509)
166 PRK05541 adenylylsulfate kinas 83.5 1.4 3.1E-05 39.6 4.0 26 178-203 6-31 (176)
167 cd02024 NRK1 Nicotinamide ribo 83.4 0.92 2E-05 41.2 2.7 23 181-203 1-23 (187)
168 PRK10463 hydrogenase nickel in 83.4 2.2 4.7E-05 41.5 5.3 35 169-203 94-128 (290)
169 cd02023 UMPK Uridine monophosp 83.2 0.94 2E-05 41.7 2.8 23 181-203 1-23 (198)
170 PRK14964 DNA polymerase III su 83.2 1.6 3.5E-05 46.0 4.7 46 158-203 13-59 (491)
171 cd02025 PanK Pantothenate kina 83.2 0.92 2E-05 42.6 2.7 23 181-203 1-23 (220)
172 PRK05564 DNA polymerase III su 83.0 1.7 3.7E-05 43.3 4.8 46 158-203 4-50 (313)
173 PRK14949 DNA polymerase III su 83.0 1.5 3.3E-05 49.1 4.6 47 158-204 16-63 (944)
174 TIGR00554 panK_bact pantothena 82.9 1.6 3.4E-05 42.7 4.3 27 177-203 60-86 (290)
175 PRK04040 adenylate kinase; Pro 82.9 1.3 2.9E-05 40.3 3.6 24 180-203 3-26 (188)
176 smart00367 LRR_CC Leucine-rich 82.7 0.77 1.7E-05 26.4 1.3 17 526-542 1-17 (26)
177 PRK12323 DNA polymerase III su 82.6 1.8 4E-05 46.8 4.8 47 158-204 16-63 (700)
178 CHL00081 chlI Mg-protoporyphyr 82.5 1.6 3.4E-05 43.9 4.1 46 158-203 17-62 (350)
179 COG3640 CooC CO dehydrogenase 82.3 1.7 3.8E-05 40.3 3.9 23 181-203 2-24 (255)
180 PRK14960 DNA polymerase III su 82.2 2 4.4E-05 46.6 5.0 46 158-203 15-61 (702)
181 PF05673 DUF815: Protein of un 81.9 1.5 3.3E-05 41.2 3.6 46 158-203 27-76 (249)
182 TIGR01360 aden_kin_iso1 adenyl 81.9 1.4 3.1E-05 39.9 3.4 26 178-203 2-27 (188)
183 TIGR03346 chaperone_ClpB ATP-d 81.8 1.9 4.1E-05 49.4 5.0 46 158-203 173-218 (852)
184 PF03193 DUF258: Protein of un 81.8 1.9 4.1E-05 38.0 3.9 36 165-203 24-59 (161)
185 PRK14952 DNA polymerase III su 81.7 1.9 4.1E-05 46.6 4.7 47 158-204 13-60 (584)
186 PRK10751 molybdopterin-guanine 81.6 1.6 3.5E-05 38.9 3.5 26 178-203 5-30 (173)
187 PRK06851 hypothetical protein; 81.5 19 0.00042 36.5 11.4 39 161-203 200-238 (367)
188 PF13173 AAA_14: AAA domain 81.3 1.6 3.5E-05 36.8 3.3 24 180-203 3-26 (128)
189 PRK06835 DNA replication prote 81.2 38 0.00083 33.9 13.4 25 180-204 184-208 (329)
190 cd02028 UMPK_like Uridine mono 80.9 1.4 3E-05 39.9 2.9 23 181-203 1-23 (179)
191 PRK03839 putative kinase; Prov 80.8 1.6 3.4E-05 39.5 3.3 23 181-203 2-24 (180)
192 COG3899 Predicted ATPase [Gene 80.8 2.4 5.2E-05 48.3 5.4 47 160-206 2-51 (849)
193 PRK14970 DNA polymerase III su 80.8 2.4 5.3E-05 43.3 5.0 46 158-203 17-63 (367)
194 PRK08691 DNA polymerase III su 80.6 2.3 5E-05 46.5 4.8 46 158-203 16-62 (709)
195 PTZ00112 origin recognition co 80.3 3.2 7E-05 46.4 5.8 47 157-203 754-805 (1164)
196 PRK07003 DNA polymerase III su 80.2 2.1 4.6E-05 47.1 4.4 47 158-204 16-63 (830)
197 PRK14951 DNA polymerase III su 80.2 2.3 5E-05 46.2 4.7 47 158-204 16-63 (618)
198 PRK10865 protein disaggregatio 80.2 99 0.0021 35.7 17.9 47 158-204 568-623 (857)
199 PRK07994 DNA polymerase III su 80.2 2.3 4.9E-05 46.5 4.7 47 158-204 16-63 (647)
200 PF13671 AAA_33: AAA domain; P 80.0 1.9 4.2E-05 37.0 3.5 23 181-203 1-23 (143)
201 PRK09111 DNA polymerase III su 79.9 2.2 4.8E-05 46.3 4.5 47 158-204 24-71 (598)
202 TIGR01287 nifH nitrogenase iro 79.4 1.4 3E-05 43.1 2.5 24 180-203 1-24 (275)
203 TIGR02397 dnaX_nterm DNA polym 79.1 3 6.5E-05 42.4 5.1 46 158-203 14-60 (355)
204 PRK11034 clpA ATP-dependent Cl 79.0 2.6 5.7E-05 47.2 4.8 46 158-203 186-231 (758)
205 PRK06217 hypothetical protein; 79.0 2 4.4E-05 38.9 3.4 23 181-203 3-25 (183)
206 PRK13975 thymidylate kinase; P 78.9 2 4.4E-05 39.3 3.4 24 180-203 3-26 (196)
207 PRK14969 DNA polymerase III su 78.9 2.7 5.9E-05 45.1 4.7 46 158-203 16-62 (527)
208 PRK00889 adenylylsulfate kinas 78.7 2.2 4.7E-05 38.3 3.5 25 179-203 4-28 (175)
209 COG1474 CDC6 Cdc6-related prot 78.6 5.7 0.00012 40.4 6.7 49 158-206 17-69 (366)
210 TIGR02322 phosphon_PhnN phosph 78.6 2 4.4E-05 38.7 3.2 24 180-203 2-25 (179)
211 PRK08084 DNA replication initi 78.2 3.9 8.5E-05 38.8 5.2 46 158-203 23-69 (235)
212 PRK08903 DnaA regulatory inact 78.1 3.8 8.3E-05 38.6 5.1 43 161-203 22-66 (227)
213 PF08477 Miro: Miro-like prote 77.9 2 4.4E-05 35.4 2.9 22 182-203 2-23 (119)
214 KOG0927 Predicted transporter 77.9 11 0.00024 39.5 8.4 116 68-204 317-441 (614)
215 PRK06645 DNA polymerase III su 77.8 3.2 6.9E-05 44.1 4.8 47 158-204 21-68 (507)
216 CHL00181 cbbX CbbX; Provisiona 77.7 3.3 7.2E-05 40.6 4.6 46 158-203 23-83 (287)
217 PRK07764 DNA polymerase III su 77.7 3 6.4E-05 47.2 4.8 47 158-204 15-62 (824)
218 PF13747 DUF4164: Domain of un 77.7 32 0.00069 26.9 9.1 69 21-89 20-88 (89)
219 PRK03846 adenylylsulfate kinas 77.6 2.4 5.2E-05 39.0 3.5 27 177-203 22-48 (198)
220 COG2019 AdkA Archaeal adenylat 77.6 2.2 4.8E-05 37.3 2.9 25 179-203 4-28 (189)
221 PRK00625 shikimate kinase; Pro 77.6 2.2 4.8E-05 38.3 3.1 22 182-203 3-24 (173)
222 PTZ00454 26S protease regulato 77.5 3.5 7.6E-05 42.5 4.9 46 158-203 145-203 (398)
223 TIGR00176 mobB molybdopterin-g 77.4 2.1 4.5E-05 37.7 2.8 23 181-203 1-23 (155)
224 cd02020 CMPK Cytidine monophos 77.2 2 4.4E-05 37.0 2.8 23 181-203 1-23 (147)
225 KOG3308 Uncharacterized protei 77.0 2.3 5.1E-05 38.4 2.9 25 179-203 4-28 (225)
226 PRK07471 DNA polymerase III su 76.9 3.9 8.5E-05 41.6 5.0 47 158-204 19-66 (365)
227 PRK07940 DNA polymerase III su 76.8 4.1 9E-05 41.9 5.2 46 158-203 5-60 (394)
228 PRK00131 aroK shikimate kinase 76.7 2.7 5.8E-05 37.6 3.4 25 179-203 4-28 (175)
229 smart00382 AAA ATPases associa 76.5 2.2 4.8E-05 36.0 2.8 24 180-203 3-26 (148)
230 PF13401 AAA_22: AAA domain; P 76.4 2.7 5.8E-05 35.4 3.2 25 179-203 4-28 (131)
231 COG1763 MobB Molybdopterin-gua 76.3 2.7 5.9E-05 37.0 3.2 25 179-203 2-26 (161)
232 COG1419 FlhF Flagellar GTP-bin 76.3 3.8 8.1E-05 41.6 4.5 38 164-201 184-226 (407)
233 PRK05439 pantothenate kinase; 76.2 3.8 8.2E-05 40.5 4.5 27 177-203 84-110 (311)
234 PRK13230 nitrogenase reductase 76.2 2.1 4.5E-05 41.9 2.8 24 180-203 2-25 (279)
235 TIGR00150 HI0065_YjeE ATPase, 76.2 5.3 0.00011 34.0 4.8 37 167-203 8-46 (133)
236 COG1102 Cmk Cytidylate kinase 76.1 2.6 5.6E-05 36.7 2.9 23 181-203 2-24 (179)
237 PF00005 ABC_tran: ABC transpo 75.8 2.6 5.7E-05 35.9 3.0 24 180-203 12-35 (137)
238 PRK08727 hypothetical protein; 75.8 7.9 0.00017 36.7 6.5 43 161-203 23-65 (233)
239 cd02117 NifH_like This family 75.7 2.2 4.7E-05 39.8 2.6 24 180-203 1-24 (212)
240 TIGR03263 guanyl_kin guanylate 75.6 2.3 5E-05 38.3 2.7 24 180-203 2-25 (180)
241 COG1936 Predicted nucleotide k 75.6 2.4 5.2E-05 37.4 2.6 20 181-200 2-21 (180)
242 cd03116 MobB Molybdenum is an 75.5 3.2 7E-05 36.6 3.5 24 180-203 2-25 (159)
243 PRK09112 DNA polymerase III su 75.5 4.5 9.9E-05 40.9 5.0 47 158-204 23-70 (351)
244 cd00227 CPT Chloramphenicol (C 75.4 2.8 6E-05 37.7 3.2 24 180-203 3-26 (175)
245 TIGR00602 rad24 checkpoint pro 75.4 3.5 7.6E-05 45.0 4.4 46 158-203 84-134 (637)
246 PRK14493 putative bifunctional 75.3 2.8 6.1E-05 40.7 3.4 24 180-203 2-25 (274)
247 PTZ00361 26 proteosome regulat 75.2 4.7 0.0001 42.0 5.1 46 158-203 183-241 (438)
248 PF00910 RNA_helicase: RNA hel 75.2 2.5 5.5E-05 34.4 2.6 21 183-203 2-22 (107)
249 PRK06305 DNA polymerase III su 75.2 4.6 0.0001 42.4 5.2 47 158-204 17-64 (451)
250 COG1116 TauB ABC-type nitrate/ 75.1 2.5 5.5E-05 39.7 2.8 26 178-203 28-53 (248)
251 COG1124 DppF ABC-type dipeptid 75.0 2.6 5.6E-05 39.4 2.8 26 178-203 32-57 (252)
252 COG4107 PhnK ABC-type phosphon 74.9 2.6 5.6E-05 37.1 2.6 25 180-204 33-57 (258)
253 COG1222 RPT1 ATP-dependent 26S 74.9 4.7 0.0001 39.9 4.7 46 158-203 151-209 (406)
254 PRK13407 bchI magnesium chelat 74.8 4 8.6E-05 40.9 4.3 46 158-203 8-53 (334)
255 cd01983 Fer4_NifH The Fer4_Nif 74.6 2.9 6.2E-05 32.7 2.8 23 181-203 1-23 (99)
256 PRK13531 regulatory ATPase Rav 74.5 6 0.00013 41.4 5.6 44 158-203 20-63 (498)
257 PRK13947 shikimate kinase; Pro 74.5 2.9 6.2E-05 37.3 3.0 23 181-203 3-25 (171)
258 cd01672 TMPK Thymidine monopho 74.4 3.1 6.6E-05 38.1 3.3 23 181-203 2-24 (200)
259 PRK00300 gmk guanylate kinase; 74.1 2.8 6.2E-05 38.7 3.0 25 179-203 5-29 (205)
260 PRK13232 nifH nitrogenase redu 74.1 2.5 5.4E-05 41.2 2.7 24 180-203 2-25 (273)
261 PRK14950 DNA polymerase III su 74.1 4.3 9.4E-05 44.3 4.8 46 158-203 16-62 (585)
262 PF01583 APS_kinase: Adenylyls 74.0 4 8.6E-05 35.7 3.6 24 180-203 3-26 (156)
263 PF01926 MMR_HSR1: 50S ribosom 73.9 3 6.5E-05 34.4 2.8 21 182-202 2-22 (116)
264 PF00142 Fer4_NifH: 4Fe-4S iro 73.9 3.3 7.1E-05 39.4 3.3 24 180-203 1-24 (273)
265 PRK13949 shikimate kinase; Pro 73.8 3.1 6.6E-05 37.2 3.0 23 181-203 3-25 (169)
266 cd00464 SK Shikimate kinase (S 73.8 3.1 6.8E-05 36.2 3.1 22 182-203 2-23 (154)
267 COG1126 GlnQ ABC-type polar am 73.7 3.1 6.7E-05 38.2 2.9 24 179-202 28-51 (240)
268 PRK06647 DNA polymerase III su 73.7 4.5 9.8E-05 43.7 4.7 47 158-204 16-63 (563)
269 cd02040 NifH NifH gene encodes 73.7 2.7 5.8E-05 40.8 2.8 24 180-203 2-25 (270)
270 CHL00095 clpC Clp protease ATP 73.5 1E+02 0.0022 35.4 15.7 47 158-204 509-564 (821)
271 COG1100 GTPase SAR1 and relate 73.4 2.5 5.4E-05 39.4 2.5 24 180-203 6-29 (219)
272 PRK06893 DNA replication initi 73.4 9.9 0.00021 35.9 6.5 26 178-203 38-63 (229)
273 PRK10078 ribose 1,5-bisphospho 73.3 3 6.6E-05 37.9 2.9 23 181-203 4-26 (186)
274 PLN02796 D-glycerate 3-kinase 73.1 3.3 7.2E-05 41.3 3.3 26 178-203 99-124 (347)
275 cd04153 Arl5_Arl8 Arl5/Arl8 su 72.7 5 0.00011 35.9 4.2 35 168-202 4-38 (174)
276 cd04139 RalA_RalB RalA/RalB su 72.7 3 6.4E-05 36.6 2.7 23 181-203 2-24 (164)
277 PF00004 AAA: ATPase family as 72.6 3.7 8.1E-05 34.4 3.2 22 182-203 1-22 (132)
278 cd02021 GntK Gluconate kinase 72.5 3.1 6.6E-05 36.2 2.7 22 182-203 2-23 (150)
279 TIGR02902 spore_lonB ATP-depen 72.4 8.2 0.00018 41.6 6.3 46 158-203 65-110 (531)
280 PLN02348 phosphoribulokinase 72.3 4.2 9.2E-05 41.3 3.8 27 177-203 47-73 (395)
281 COG1120 FepC ABC-type cobalami 72.3 3.2 7E-05 39.6 2.9 25 179-203 28-52 (258)
282 PRK13233 nifH nitrogenase redu 72.1 3.1 6.7E-05 40.6 2.8 24 180-203 3-26 (275)
283 cd00820 PEPCK_HprK Phosphoenol 72.1 3.9 8.5E-05 33.2 2.9 22 179-200 15-36 (107)
284 PRK13695 putative NTPase; Prov 72.0 3.6 7.9E-05 36.9 3.1 23 181-203 2-24 (174)
285 PRK05057 aroK shikimate kinase 72.0 3.9 8.4E-05 36.6 3.2 24 180-203 5-28 (172)
286 PF00448 SRP54: SRP54-type pro 72.0 4.6 0.0001 37.1 3.8 24 180-203 2-25 (196)
287 PRK13235 nifH nitrogenase redu 71.9 3 6.4E-05 40.7 2.7 24 180-203 2-25 (274)
288 PRK13946 shikimate kinase; Pro 71.9 3.6 7.8E-05 37.3 3.0 24 180-203 11-34 (184)
289 PRK12339 2-phosphoglycerate ki 71.8 4.3 9.4E-05 37.3 3.5 25 179-203 3-27 (197)
290 COG0003 ArsA Predicted ATPase 71.6 2.8 6E-05 41.6 2.4 24 179-202 2-25 (322)
291 TIGR03689 pup_AAA proteasome A 71.6 4.9 0.00011 42.7 4.3 46 158-203 182-240 (512)
292 PRK04182 cytidylate kinase; Pr 71.4 3.9 8.5E-05 36.7 3.2 23 181-203 2-24 (180)
293 COG0237 CoaE Dephospho-CoA kin 71.4 4.2 9.2E-05 37.4 3.3 23 179-201 2-24 (201)
294 TIGR01359 UMP_CMP_kin_fam UMP- 71.3 3.3 7.2E-05 37.4 2.7 23 181-203 1-23 (183)
295 PRK00698 tmk thymidylate kinas 71.3 4.2 9.1E-05 37.5 3.5 24 180-203 4-27 (205)
296 TIGR01281 DPOR_bchL light-inde 71.3 3.2 7E-05 40.3 2.7 23 181-203 2-24 (268)
297 PF07693 KAP_NTPase: KAP famil 71.2 7.4 0.00016 38.9 5.4 39 165-203 3-44 (325)
298 TIGR00390 hslU ATP-dependent p 71.2 6.3 0.00014 40.4 4.8 46 158-203 12-71 (441)
299 cd01858 NGP_1 NGP-1. Autoanti 71.1 7.5 0.00016 34.1 4.8 43 161-203 81-126 (157)
300 PRK14953 DNA polymerase III su 71.0 6.5 0.00014 41.7 5.1 46 158-203 16-62 (486)
301 PRK13768 GTPase; Provisional 71.0 3.6 7.8E-05 39.5 3.0 25 179-203 2-26 (253)
302 TIGR01313 therm_gnt_kin carboh 70.7 3.3 7E-05 36.7 2.4 22 182-203 1-22 (163)
303 PRK08939 primosomal protein Dn 70.7 68 0.0015 31.8 11.9 43 162-204 135-181 (306)
304 cd03255 ABC_MJ0796_Lo1CDE_FtsE 70.5 3.8 8.1E-05 38.3 2.9 25 179-203 30-54 (218)
305 TIGR03499 FlhF flagellar biosy 70.5 4.3 9.2E-05 39.8 3.4 26 178-203 193-218 (282)
306 PRK09825 idnK D-gluconate kina 70.4 4.1 9E-05 36.6 3.1 24 180-203 4-27 (176)
307 TIGR02016 BchX chlorophyllide 70.4 3.4 7.3E-05 40.8 2.7 24 180-203 1-24 (296)
308 cd03114 ArgK-like The function 70.3 3.9 8.4E-05 35.6 2.8 23 181-203 1-23 (148)
309 PRK13231 nitrogenase reductase 70.3 3.7 8E-05 39.7 2.9 24 180-203 3-26 (264)
310 PRK08181 transposase; Validate 70.2 1.1E+02 0.0024 29.7 13.4 31 172-204 101-131 (269)
311 cd02034 CooC The accessory pro 70.1 4.7 0.0001 33.4 3.1 22 182-203 2-23 (116)
312 TIGR02173 cyt_kin_arch cytidyl 70.0 4.5 9.7E-05 36.0 3.2 23 181-203 2-24 (171)
313 cd03225 ABC_cobalt_CbiO_domain 69.9 3.9 8.6E-05 37.9 2.9 25 179-203 27-51 (211)
314 PF07726 AAA_3: ATPase family 69.8 3.5 7.5E-05 34.6 2.2 27 182-211 2-28 (131)
315 COG1875 NYN ribonuclease and A 69.8 5.2 0.00011 39.8 3.7 40 162-201 228-267 (436)
316 cd03238 ABC_UvrA The excision 69.8 4 8.8E-05 36.7 2.8 22 179-200 21-42 (176)
317 COG0563 Adk Adenylate kinase a 69.8 4.2 9.2E-05 36.6 2.9 22 182-203 3-24 (178)
318 cd02032 Bchl_like This family 69.7 3.7 8E-05 39.8 2.8 23 181-203 2-24 (267)
319 cd01878 HflX HflX subfamily. 69.7 6.6 0.00014 36.2 4.4 27 177-203 39-65 (204)
320 PRK14948 DNA polymerase III su 69.6 6.8 0.00015 42.9 5.0 47 158-204 16-63 (620)
321 PF13521 AAA_28: AAA domain; P 69.6 4.1 9E-05 36.0 2.9 21 182-202 2-22 (163)
322 PRK11889 flhF flagellar biosyn 69.3 4.6 9.9E-05 41.1 3.3 26 178-203 240-265 (436)
323 COG3638 ABC-type phosphate/pho 69.3 4.4 9.5E-05 37.8 2.9 26 178-203 29-54 (258)
324 cd04155 Arl3 Arl3 subfamily. 68.9 6.3 0.00014 35.0 4.0 25 178-202 13-37 (173)
325 KOG0781 Signal recognition par 68.9 6.7 0.00015 40.3 4.3 35 169-203 368-403 (587)
326 PRK05201 hslU ATP-dependent pr 68.9 9.5 0.00021 39.2 5.4 46 158-203 15-74 (443)
327 cd00071 GMPK Guanosine monopho 68.8 4.5 9.7E-05 34.7 2.8 22 182-203 2-23 (137)
328 TIGR01166 cbiO cobalt transpor 68.8 4.3 9.4E-05 37.0 2.9 24 180-203 19-42 (190)
329 cd03229 ABC_Class3 This class 68.7 4.5 9.8E-05 36.4 3.0 26 178-203 25-50 (178)
330 PRK07933 thymidylate kinase; V 68.6 5 0.00011 37.4 3.3 23 181-203 2-24 (213)
331 TIGR00960 3a0501s02 Type II (G 68.6 4.3 9.3E-05 37.9 2.9 25 179-203 29-53 (216)
332 cd01673 dNK Deoxyribonucleosid 68.6 4.1 8.9E-05 37.2 2.7 23 181-203 1-23 (193)
333 COG4608 AppF ABC-type oligopep 68.6 4.3 9.3E-05 38.7 2.8 26 178-203 38-63 (268)
334 cd02027 APSK Adenosine 5'-phos 68.5 4.5 9.7E-05 35.2 2.8 23 181-203 1-23 (149)
335 PRK09087 hypothetical protein; 68.5 12 0.00025 35.3 5.8 26 178-203 43-68 (226)
336 PRK00454 engB GTP-binding prot 68.5 4.7 0.0001 36.8 3.1 28 175-202 20-47 (196)
337 PRK14974 cell division protein 68.5 9.5 0.00021 38.2 5.4 26 178-203 139-164 (336)
338 TIGR02880 cbbX_cfxQ probable R 68.5 8.5 0.00018 37.7 5.0 45 159-203 23-82 (284)
339 PF02374 ArsA_ATPase: Anion-tr 68.4 4.2 9.1E-05 40.3 2.8 24 180-203 2-25 (305)
340 KOG1532 GTPase XAB1, interacts 68.3 5.3 0.00012 38.0 3.3 26 178-203 18-43 (366)
341 cd03222 ABC_RNaseL_inhibitor T 68.2 4.6 0.0001 36.4 2.8 26 178-203 24-49 (177)
342 PRK14965 DNA polymerase III su 68.1 7.3 0.00016 42.4 4.8 47 158-204 16-63 (576)
343 cd01862 Rab7 Rab7 subfamily. 68.1 3.9 8.5E-05 36.2 2.4 23 181-203 2-24 (172)
344 smart00173 RAS Ras subfamily o 68.0 4.4 9.6E-05 35.6 2.7 22 181-202 2-23 (164)
345 PF11868 DUF3388: Protein of u 68.0 7.6 0.00016 33.6 3.8 29 167-195 42-70 (192)
346 PRK10536 hypothetical protein; 67.9 9.9 0.00021 36.3 5.1 43 159-203 56-98 (262)
347 TIGR00041 DTMP_kinase thymidyl 67.9 5.6 0.00012 36.3 3.5 24 180-203 4-27 (195)
348 KOG4308 LRR-containing protein 67.8 0.16 3.5E-06 53.3 -7.5 108 222-333 89-218 (478)
349 COG1136 SalX ABC-type antimicr 67.8 4.8 0.0001 37.6 2.9 25 179-203 31-55 (226)
350 PRK08154 anaerobic benzoate ca 67.8 8.5 0.00018 38.3 4.9 27 177-203 131-157 (309)
351 PRK03731 aroL shikimate kinase 67.8 5.2 0.00011 35.7 3.1 24 180-203 3-26 (171)
352 PRK13185 chlL protochlorophyll 67.8 4.5 9.8E-05 39.3 3.0 24 180-203 3-26 (270)
353 PRK06761 hypothetical protein; 67.7 5.1 0.00011 38.9 3.2 24 180-203 4-27 (282)
354 cd02030 NDUO42 NADH:Ubiquinone 67.7 4.5 9.7E-05 37.9 2.8 23 181-203 1-23 (219)
355 cd02022 DPCK Dephospho-coenzym 67.6 4.3 9.4E-05 36.6 2.6 21 181-201 1-21 (179)
356 PRK07133 DNA polymerase III su 67.6 7.7 0.00017 42.9 4.9 47 158-204 18-65 (725)
357 PRK14530 adenylate kinase; Pro 67.5 5.2 0.00011 37.3 3.2 23 181-203 5-27 (215)
358 PRK09435 membrane ATPase/prote 67.5 10 0.00022 37.9 5.4 36 168-203 43-80 (332)
359 PF13516 LRR_6: Leucine Rich r 67.4 2.5 5.4E-05 23.6 0.6 10 246-255 3-12 (24)
360 cd04159 Arl10_like Arl10-like 67.4 3.9 8.4E-05 35.4 2.2 21 182-202 2-22 (159)
361 PRK13948 shikimate kinase; Pro 67.4 5.4 0.00012 36.1 3.1 26 178-203 9-34 (182)
362 cd01855 YqeH YqeH. YqeH is an 67.4 9 0.00019 34.9 4.7 41 161-203 111-151 (190)
363 cd03269 ABC_putative_ATPase Th 67.3 4.8 0.0001 37.3 2.9 25 179-203 26-50 (210)
364 PF03308 ArgK: ArgK protein; 67.2 13 0.00028 35.4 5.6 38 166-203 14-53 (266)
365 cd03260 ABC_PstB_phosphate_tra 67.2 4.9 0.00011 37.9 3.0 25 179-203 26-50 (227)
366 TIGR00064 ftsY signal recognit 67.1 6.3 0.00014 38.3 3.8 26 178-203 71-96 (272)
367 PF08298 AAA_PrkA: PrkA AAA do 67.1 11 0.00023 37.7 5.3 46 158-203 61-112 (358)
368 cd02026 PRK Phosphoribulokinas 67.1 4.3 9.4E-05 39.5 2.6 23 181-203 1-23 (273)
369 KOG1547 Septin CDC10 and relat 67.1 23 0.00049 33.1 6.9 44 160-203 26-70 (336)
370 cd03297 ABC_ModC_molybdenum_tr 67.0 5.3 0.00012 37.2 3.2 26 177-203 22-47 (214)
371 cd04119 RJL RJL (RabJ-Like) su 67.0 4.6 0.0001 35.5 2.6 22 182-203 3-24 (168)
372 cd04113 Rab4 Rab4 subfamily. 67.0 4.6 0.0001 35.4 2.6 22 182-203 3-24 (161)
373 PRK08099 bifunctional DNA-bind 66.9 5.7 0.00012 40.9 3.6 30 174-203 214-243 (399)
374 KOG0727 26S proteasome regulat 66.9 1.2E+02 0.0025 28.8 12.4 46 158-203 155-213 (408)
375 PRK08451 DNA polymerase III su 66.9 8.2 0.00018 41.2 4.8 47 158-204 14-61 (535)
376 cd01876 YihA_EngB The YihA (En 66.9 4.4 9.6E-05 35.5 2.5 20 182-201 2-21 (170)
377 cd03259 ABC_Carb_Solutes_like 66.8 5 0.00011 37.3 2.9 25 179-203 26-50 (213)
378 cd00154 Rab Rab family. Rab G 66.8 4.8 0.0001 34.8 2.7 22 182-203 3-24 (159)
379 cd03293 ABC_NrtD_SsuB_transpor 66.7 5 0.00011 37.6 2.9 25 179-203 30-54 (220)
380 TIGR02673 FtsE cell division A 66.7 5 0.00011 37.3 2.9 25 179-203 28-52 (214)
381 PF03266 NTPase_1: NTPase; In 66.5 5.8 0.00012 35.4 3.1 22 182-203 2-23 (168)
382 cd03261 ABC_Org_Solvent_Resist 66.5 5 0.00011 38.0 2.9 24 180-203 27-50 (235)
383 cd01133 F1-ATPase_beta F1 ATP 66.3 6.5 0.00014 38.0 3.6 25 179-203 69-93 (274)
384 PRK10584 putative ABC transpor 66.3 5.2 0.00011 37.7 3.0 26 178-203 35-60 (228)
385 cd03263 ABC_subfamily_A The AB 66.1 5.2 0.00011 37.4 2.9 25 179-203 28-52 (220)
386 PRK13541 cytochrome c biogenes 66.1 5.4 0.00012 36.5 2.9 24 180-203 27-50 (195)
387 cd03265 ABC_DrrA DrrA is the A 66.0 5.3 0.00011 37.4 3.0 25 179-203 26-50 (220)
388 smart00175 RAB Rab subfamily o 66.0 4.7 0.0001 35.3 2.5 22 182-203 3-24 (164)
389 cd04171 SelB SelB subfamily. 66.0 5.3 0.00012 34.9 2.9 21 181-201 2-22 (164)
390 cd03235 ABC_Metallic_Cations A 65.9 5.1 0.00011 37.3 2.8 25 179-203 25-49 (213)
391 cd04138 H_N_K_Ras_like H-Ras/N 65.9 5.1 0.00011 34.9 2.7 22 181-202 3-24 (162)
392 cd03226 ABC_cobalt_CbiO_domain 65.8 5.3 0.00011 36.9 2.9 25 179-203 26-50 (205)
393 PLN03046 D-glycerate 3-kinase; 65.7 5.6 0.00012 40.8 3.1 26 178-203 211-236 (460)
394 TIGR00101 ureG urease accessor 65.7 6.2 0.00013 36.3 3.2 23 181-203 3-25 (199)
395 cd00876 Ras Ras family. The R 65.7 5 0.00011 34.9 2.6 21 182-202 2-22 (160)
396 PRK14971 DNA polymerase III su 65.7 8.5 0.00019 42.2 4.8 46 158-203 17-63 (614)
397 smart00365 LRR_SD22 Leucine-ri 65.6 4.3 9.3E-05 23.4 1.3 14 272-285 3-16 (26)
398 cd03237 ABC_RNaseL_inhibitor_d 65.5 5.4 0.00012 38.2 2.9 24 180-203 26-49 (246)
399 cd03292 ABC_FtsE_transporter F 65.5 5.5 0.00012 37.1 2.9 25 179-203 27-51 (214)
400 COG0194 Gmk Guanylate kinase [ 65.5 6.9 0.00015 35.1 3.3 24 180-203 5-28 (191)
401 cd03264 ABC_drug_resistance_li 65.5 4.9 0.00011 37.3 2.6 23 181-203 27-49 (211)
402 cd00878 Arf_Arl Arf (ADP-ribos 65.4 4.8 0.0001 35.1 2.4 22 182-203 2-23 (158)
403 cd03256 ABC_PhnC_transporter A 65.3 5.4 0.00012 37.9 2.9 25 179-203 27-51 (241)
404 PRK13234 nifH nitrogenase redu 65.3 5.6 0.00012 39.3 3.1 25 179-203 4-28 (295)
405 TIGR02315 ABC_phnC phosphonate 65.2 5.4 0.00012 38.0 2.9 25 179-203 28-52 (243)
406 cd03257 ABC_NikE_OppD_transpor 65.1 5.4 0.00012 37.5 2.9 25 179-203 31-55 (228)
407 TIGR00231 small_GTP small GTP- 65.1 5.2 0.00011 34.4 2.6 23 181-203 3-25 (161)
408 PF00071 Ras: Ras family; Int 65.1 5.9 0.00013 34.7 3.0 22 182-203 2-23 (162)
409 TIGR03608 L_ocin_972_ABC putat 65.1 5.7 0.00012 36.7 2.9 24 180-203 25-48 (206)
410 TIGR02528 EutP ethanolamine ut 65.1 5.3 0.00011 34.1 2.6 22 181-202 2-23 (142)
411 cd03296 ABC_CysA_sulfate_impor 65.0 5.5 0.00012 37.8 2.9 25 179-203 28-52 (239)
412 PRK13765 ATP-dependent proteas 65.0 8.8 0.00019 42.1 4.7 56 158-217 31-86 (637)
413 PF13604 AAA_30: AAA domain; P 65.0 13 0.00027 34.2 5.1 35 169-203 8-42 (196)
414 cd04163 Era Era subfamily. Er 64.9 6.2 0.00013 34.4 3.1 24 179-202 3-26 (168)
415 PRK06620 hypothetical protein; 64.9 5.7 0.00012 37.1 2.9 24 180-203 45-68 (214)
416 cd04160 Arfrp1 Arfrp1 subfamil 64.9 5.9 0.00013 34.9 2.9 22 182-203 2-23 (167)
417 PRK14490 putative bifunctional 64.9 6.2 0.00013 40.4 3.4 25 179-203 5-29 (369)
418 PRK15453 phosphoribulokinase; 64.8 7.5 0.00016 37.6 3.6 26 178-203 4-29 (290)
419 smart00178 SAR Sar1p-like memb 64.8 9.1 0.0002 34.6 4.2 36 167-202 4-40 (184)
420 cd04124 RabL2 RabL2 subfamily. 64.8 5.5 0.00012 35.0 2.7 21 182-202 3-23 (161)
421 TIGR02211 LolD_lipo_ex lipopro 64.7 5.8 0.00013 37.1 2.9 26 178-203 30-55 (221)
422 TIGR03864 PQQ_ABC_ATP ABC tran 64.7 5.7 0.00012 37.6 3.0 26 178-203 26-51 (236)
423 PRK15177 Vi polysaccharide exp 64.7 5.8 0.00013 37.0 2.9 25 179-203 13-37 (213)
424 PRK05642 DNA replication initi 64.6 13 0.00028 35.3 5.3 25 179-203 45-69 (234)
425 TIGR00764 lon_rel lon-related 64.5 13 0.00029 40.6 6.0 55 158-216 18-72 (608)
426 PRK14959 DNA polymerase III su 64.5 9.3 0.0002 41.5 4.7 47 158-204 16-63 (624)
427 PF00625 Guanylate_kin: Guanyl 64.5 9 0.0002 34.6 4.1 31 180-213 3-33 (183)
428 PRK13538 cytochrome c biogenes 64.4 5.9 0.00013 36.6 2.9 25 179-203 27-51 (204)
429 PLN02318 phosphoribulokinase/u 64.4 6.7 0.00015 42.1 3.5 28 176-203 62-89 (656)
430 TIGR03574 selen_PSTK L-seryl-t 64.3 6.1 0.00013 37.8 3.1 22 182-203 2-23 (249)
431 PRK11034 clpA ATP-dependent Cl 64.3 12 0.00025 42.1 5.6 46 158-203 458-512 (758)
432 PRK11629 lolD lipoprotein tran 64.3 5.9 0.00013 37.5 2.9 25 179-203 35-59 (233)
433 PF01078 Mg_chelatase: Magnesi 64.2 12 0.00027 34.3 4.8 44 158-203 3-46 (206)
434 TIGR01184 ntrCD nitrate transp 64.2 6 0.00013 37.4 2.9 24 180-203 12-35 (230)
435 PRK05563 DNA polymerase III su 64.2 10 0.00022 41.2 5.0 46 158-203 16-62 (559)
436 cd01898 Obg Obg subfamily. Th 64.1 5.4 0.00012 35.3 2.5 21 182-202 3-23 (170)
437 cd03301 ABC_MalK_N The N-termi 64.0 6.1 0.00013 36.7 3.0 25 179-203 26-50 (213)
438 PRK11248 tauB taurine transpor 64.0 6 0.00013 38.1 2.9 25 179-203 27-51 (255)
439 cd04123 Rab21 Rab21 subfamily. 64.0 5.7 0.00012 34.6 2.6 23 181-203 2-24 (162)
440 cd00879 Sar1 Sar1 subfamily. 63.9 5.6 0.00012 36.1 2.6 24 179-202 19-42 (190)
441 cd01129 PulE-GspE PulE/GspE Th 63.9 11 0.00025 36.4 4.8 43 161-203 62-104 (264)
442 KOG0066 eIF2-interacting prote 63.9 7.1 0.00015 39.6 3.4 34 180-213 291-324 (807)
443 PRK05342 clpX ATP-dependent pr 63.9 11 0.00023 39.1 4.9 46 158-203 71-132 (412)
444 TIGR01241 FtsH_fam ATP-depende 63.8 9.4 0.0002 40.8 4.7 46 158-203 55-112 (495)
445 cd04140 ARHI_like ARHI subfami 63.8 5.8 0.00013 35.0 2.6 22 181-202 3-24 (165)
446 PF03215 Rad17: Rad17 cell cyc 63.7 11 0.00025 40.2 5.2 54 158-216 19-77 (519)
447 TIGR00455 apsK adenylylsulfate 63.7 7.7 0.00017 35.1 3.5 27 177-203 16-42 (184)
448 COG0410 LivF ABC-type branched 63.7 6.5 0.00014 36.5 2.9 25 179-203 29-53 (237)
449 cd03258 ABC_MetN_methionine_tr 63.6 6.2 0.00013 37.3 2.9 26 178-203 30-55 (233)
450 COG1084 Predicted GTPase [Gene 63.6 1.1E+02 0.0024 30.3 11.2 29 178-206 167-195 (346)
451 TIGR01243 CDC48 AAA family ATP 63.6 8.8 0.00019 43.3 4.6 46 158-203 178-236 (733)
452 PF10662 PduV-EutP: Ethanolami 63.5 6.5 0.00014 33.8 2.7 24 180-203 2-25 (143)
453 cd04177 RSR1 RSR1 subgroup. R 63.5 5.9 0.00013 35.1 2.7 22 182-203 4-25 (168)
454 cd02029 PRK_like Phosphoribulo 63.4 6.2 0.00013 37.9 2.8 23 181-203 1-23 (277)
455 PRK10247 putative ABC transpor 63.4 6.3 0.00014 37.0 3.0 25 179-203 33-57 (225)
456 KOG0733 Nuclear AAA ATPase (VC 63.3 13 0.00029 39.6 5.3 46 158-203 190-247 (802)
457 TIGR02770 nickel_nikD nickel i 63.3 6.1 0.00013 37.3 2.8 25 179-203 12-36 (230)
458 PF00308 Bac_DnaA: Bacterial d 63.3 6.2 0.00014 36.9 2.8 46 158-203 9-58 (219)
459 cd03224 ABC_TM1139_LivF_branch 63.2 6.5 0.00014 36.8 3.0 26 178-203 25-50 (222)
460 TIGR02639 ClpA ATP-dependent C 63.2 12 0.00026 42.2 5.5 47 157-203 453-508 (731)
461 PRK13540 cytochrome c biogenes 63.1 6.6 0.00014 36.1 2.9 26 178-203 26-51 (200)
462 COG4240 Predicted kinase [Gene 63.1 12 0.00025 34.8 4.3 29 175-203 46-74 (300)
463 cd04150 Arf1_5_like Arf1-Arf5- 63.1 5.9 0.00013 34.8 2.5 19 182-200 3-21 (159)
464 PRK07429 phosphoribulokinase; 63.1 7.7 0.00017 38.8 3.6 27 177-203 6-32 (327)
465 cd03246 ABCC_Protease_Secretio 63.0 6.9 0.00015 35.0 3.0 25 179-203 28-52 (173)
466 PRK11124 artP arginine transpo 63.0 6.4 0.00014 37.5 2.9 25 179-203 28-52 (242)
467 cd01891 TypA_BipA TypA (tyrosi 62.9 7.7 0.00017 35.4 3.4 24 179-202 2-25 (194)
468 cd03268 ABC_BcrA_bacitracin_re 62.9 6.6 0.00014 36.4 2.9 25 179-203 26-50 (208)
469 cd04137 RheB Rheb (Ras Homolog 62.9 7.2 0.00016 34.9 3.1 22 181-202 3-24 (180)
470 cd03232 ABC_PDR_domain2 The pl 62.8 6.7 0.00014 35.8 2.9 24 179-202 33-56 (192)
471 COG1348 NifH Nitrogenase subun 62.8 5.5 0.00012 36.9 2.2 24 180-203 2-25 (278)
472 PRK11247 ssuB aliphatic sulfon 62.7 6.5 0.00014 37.9 2.9 25 179-203 38-62 (257)
473 cd03115 SRP The signal recogni 62.7 7.6 0.00016 34.7 3.2 23 181-203 2-24 (173)
474 CHL00072 chlL photochlorophyll 62.7 5.7 0.00012 39.1 2.6 22 182-203 3-24 (290)
475 PRK14489 putative bifunctional 62.7 11 0.00024 38.4 4.7 42 162-203 185-229 (366)
476 COG4555 NatA ABC-type Na+ tran 62.6 7.4 0.00016 35.4 2.9 27 177-203 26-52 (245)
477 cd03216 ABC_Carb_Monos_I This 62.5 7.1 0.00015 34.6 2.9 25 179-203 26-50 (163)
478 PRK14494 putative molybdopteri 62.5 8.2 0.00018 36.3 3.4 24 180-203 2-25 (229)
479 cd03262 ABC_HisP_GlnQ_permease 62.5 6.7 0.00015 36.4 2.9 24 180-203 27-50 (213)
480 cd03218 ABC_YhbG The ABC trans 62.4 6.7 0.00014 37.0 2.9 25 179-203 26-50 (232)
481 TIGR01978 sufC FeS assembly AT 62.3 6.4 0.00014 37.5 2.8 23 180-202 27-49 (243)
482 cd03266 ABC_NatA_sodium_export 62.2 6.8 0.00015 36.6 2.9 25 179-203 31-55 (218)
483 cd03219 ABC_Mj1267_LivG_branch 62.2 6.5 0.00014 37.2 2.8 25 179-203 26-50 (236)
484 PRK08356 hypothetical protein; 62.2 7.2 0.00016 35.7 3.0 20 180-199 6-25 (195)
485 COG1703 ArgK Putative periplas 62.1 12 0.00026 36.3 4.4 37 167-203 37-75 (323)
486 cd03295 ABC_OpuCA_Osmoprotecti 62.1 6.8 0.00015 37.3 3.0 25 179-203 27-51 (242)
487 PRK13539 cytochrome c biogenes 62.1 7 0.00015 36.2 2.9 26 178-203 27-52 (207)
488 cd01864 Rab19 Rab19 subfamily. 62.0 8.1 0.00018 34.0 3.3 24 179-202 3-26 (165)
489 TIGR00017 cmk cytidylate kinas 62.0 8 0.00017 36.1 3.3 24 180-203 3-26 (217)
490 TIGR02324 CP_lyasePhnL phospho 61.9 6.9 0.00015 36.7 2.9 25 179-203 34-58 (224)
491 PF07728 AAA_5: AAA domain (dy 61.9 8.8 0.00019 32.7 3.4 22 182-203 2-23 (139)
492 cd03221 ABCF_EF-3 ABCF_EF-3 E 61.8 7.3 0.00016 33.7 2.8 25 179-203 26-50 (144)
493 PRK10908 cell division protein 61.8 7 0.00015 36.6 2.9 26 178-203 27-52 (222)
494 PRK10619 histidine/lysine/argi 61.7 6.9 0.00015 37.7 2.9 26 178-203 30-55 (257)
495 TIGR00972 3a0107s01c2 phosphat 61.7 6.7 0.00015 37.5 2.8 26 178-203 26-51 (247)
496 cd03252 ABCC_Hemolysin The ABC 61.7 6.9 0.00015 37.1 2.9 26 178-203 27-52 (237)
497 TIGR01189 ccmA heme ABC export 61.6 7.3 0.00016 35.8 3.0 26 178-203 25-50 (198)
498 cd04101 RabL4 RabL4 (Rab-like4 61.6 6.6 0.00014 34.5 2.6 20 182-201 3-22 (164)
499 TIGR00750 lao LAO/AO transport 61.6 11 0.00023 37.3 4.3 35 169-203 22-58 (300)
500 PRK14738 gmk guanylate kinase; 61.6 7.6 0.00016 36.0 3.1 25 178-202 12-36 (206)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-42 Score=374.66 Aligned_cols=535 Identities=36% Similarity=0.546 Sum_probs=415.3
Q ss_pred CCcccccccchhhhhhHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHH
Q 007656 1 MCSFFQITCDGALFNRCLDCFLGKAAYIRNLQDNLDALETELGNLIAKKNDVMRRVVDAERQQMRRLDGVQVWVSRVDAF 80 (594)
Q Consensus 1 m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~v~~Wl~~~~~~ 80 (594)
|+++++.. ++++.+.+.+++..+.+.+.++..|++++..|+.++.| |+.++.. ...+..|.+.++++
T Consensus 1 ~~~~~s~~-----~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d-------~~a~~~~-~~~~~~~~e~~~~~ 67 (889)
T KOG4658|consen 1 MGACVSFG-----VEKLDQLLNRESECLDGKDNYILELKENLKALQSALED-------LDAKRDD-LERRVNWEEDVGDL 67 (889)
T ss_pred CCeEEEEe-----hhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHhhcch-HHHHHHHHHHHHHH
Confidence 44555444 46678889999999999999999999999999999987 6666663 47788999999999
Q ss_pred HHHHHHHHhhhhhhcccc----------------cccCcccccchhhhHHHHHHHHHHHHHHHHHHcCccceeccccccC
Q 007656 81 KTGADELITDGSEEIGKL----------------CVGGYCSKNCRSSYKFGKQVARKLRDVETLIAEGVFEAVATEVVPE 144 (594)
Q Consensus 81 ~y~aed~ld~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (594)
+|++||.++.|....... |..++|...+...+++++++..+.+.++.+..++.+...+..
T Consensus 68 ~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~---- 143 (889)
T KOG4658|consen 68 VYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGES---- 143 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceeccccc----
Confidence 999999999987654432 334666677778888889999999999998888777666521
Q ss_pred CCCCCccccCCCCCce-echhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhhccCCCCCceEEEee------
Q 007656 145 RAPEPVADKRPIEPTI-VGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVP------ 217 (594)
Q Consensus 145 ~~~~~~~~~~~~~~~~-vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~~~~~~~f~~~~w~p------ 217 (594)
..+.....+.+..+.. ||.+..++++++.|.+++..++||+||||+||||||+.++|+...+..+||..+|+.
T Consensus 144 ~~~~~~~e~~~~~~~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~ 223 (889)
T KOG4658|consen 144 LDPREKVETRPIQSESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFT 223 (889)
T ss_pred ccchhhcccCCCCccccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEccccc
Confidence 1122233333333333 999999999999999998899999999999999999999999944899999999990
Q ss_pred --------------------------------------------------------------------------------
Q 007656 218 -------------------------------------------------------------------------------- 217 (594)
Q Consensus 218 -------------------------------------------------------------------------------- 217 (594)
T Consensus 224 ~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~ 303 (889)
T KOG4658|consen 224 TRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCG 303 (889)
T ss_pred HHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 007656 218 -------------------------------------------------------------------------------- 217 (594)
Q Consensus 218 -------------------------------------------------------------------------------- 217 (594)
T Consensus 304 ~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~ 383 (889)
T KOG4658|consen 304 RAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLK 383 (889)
T ss_pred ccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 007656 218 -------------------------------------------------------------------------------- 217 (594)
Q Consensus 218 -------------------------------------------------------------------------------- 217 (594)
T Consensus 384 s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~L 463 (889)
T KOG4658|consen 384 SSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEEL 463 (889)
T ss_pred ccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHH
Confidence
Q ss_pred -------------------------------------------------------------------------------C
Q 007656 218 -------------------------------------------------------------------------------T 218 (594)
Q Consensus 218 -------------------------------------------------------------------------------~ 218 (594)
.
T Consensus 464 V~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~ 543 (889)
T KOG4658|consen 464 VRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSE 543 (889)
T ss_pred HHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCC
Confidence 7
Q ss_pred CCCccccccccccc-ccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCc
Q 007656 219 CPHLHTLFLASNNS-LQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLK 297 (594)
Q Consensus 219 ~~~L~~L~L~~~~~-l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~ 297 (594)
++.|++|-+..+.. +..++..+|..++.|++|||++|..+ +++|.+|+.|. +||||+++++.+..+|.++++|.+|.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l-~~LP~~I~~Li-~LryL~L~~t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL-SKLPSSIGELV-HLRYLDLSDTGISHLPSGLGNLKKLI 621 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc-CcCChHHhhhh-hhhcccccCCCccccchHHHHHHhhh
Confidence 78899999955553 78899999999999999999999888 99999999999 99999999999999999999999999
Q ss_pred EEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHh
Q 007656 298 CLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILL 377 (594)
Q Consensus 298 ~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 377 (594)
+|++..+..+..+|. +...|++|++|.+....... +.....++.+|.+|+.+.++......+..+.
T Consensus 622 ~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~~-------------~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~ 687 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALSN-------------DKLLLKELENLEHLENLSITISSVLLLEDLL 687 (889)
T ss_pred eeccccccccccccc-hhhhcccccEEEeecccccc-------------chhhHHhhhcccchhhheeecchhHhHhhhh
Confidence 999999977777755 47779999999998765222 4457788899999998888766554445555
Q ss_pred cCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCc-cCCCcceEeEecCCC
Q 007656 378 SSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPF-VFRSLHCVRIEQCHK 456 (594)
Q Consensus 378 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~-~~~~L~~L~L~~c~~ 456 (594)
......+..+.+.+.+..... ....+..+.+|+.|.+.+|...+. ...+.... ... .++++..+.+.+|..
T Consensus 688 ~~~~L~~~~~~l~~~~~~~~~---~~~~~~~l~~L~~L~i~~~~~~e~-~~~~~~~~----~~~~~f~~l~~~~~~~~~~ 759 (889)
T KOG4658|consen 688 GMTRLRSLLQSLSIEGCSKRT---LISSLGSLGNLEELSILDCGISEI-VIEWEESL----IVLLCFPNLSKVSILNCHM 759 (889)
T ss_pred hhHHHHHHhHhhhhcccccce---eecccccccCcceEEEEcCCCchh-hccccccc----chhhhHHHHHHHHhhcccc
Confidence 555444555556552222222 345788899999999999988652 22332210 001 277899999999999
Q ss_pred CccccccccCCCCceEeEccCccchhhhccCccCCCCcccCCCcccccccee-cccccccccccCCCCccCCCccEEeec
Q 007656 457 LKDVTFLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSL-HLSQLPALKSIYWKPLPFTHLKEISVG 535 (594)
Q Consensus 457 l~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L-~L~~~~~L~~l~~~~~~l~~L~~L~i~ 535 (594)
...+.|....|+|+.|.+..|..++++++..+.... .......|+++..+ .+.+.+.++++.+....+++|+.+.+.
T Consensus 760 ~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~--l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve 837 (889)
T KOG4658|consen 760 LRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLE--LKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVE 837 (889)
T ss_pred ccccchhhccCcccEEEEecccccccCCCHHHHhhh--cccEEecccccccceeeecCCCCceeEecccCccchhheehh
Confidence 999999999999999999999998888653322211 00124567777777 588888888888888888999999999
Q ss_pred ccCCCCCCCCCCcC--CcC-cceEEEccHhhhhhcccCchhhhccc
Q 007656 536 YCRNLKKLPLDSNS--AKE-RKFVIRGEEDWWNRLQWEDEATQIAF 578 (594)
Q Consensus 536 ~C~~L~~lp~~~~~--~~L-~~l~I~~~~~~~~~l~w~~~~~~~~~ 578 (594)
.||+++.+|..... ... ..+...-+.+|.+.++|.+++.+..+
T Consensus 838 ~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 838 ECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred cCcccccCccccccceeccccceeecCCccceeeEEehhhhhhhhc
Confidence 99999999987655 332 22333344556778889888777665
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.97 E-value=5.3e-29 Score=287.52 Aligned_cols=46 Identities=26% Similarity=0.588 Sum_probs=41.9
Q ss_pred CceechhHHHHHHHHHHh--cCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLV--EESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~--~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++||+++.++++..+|. .+++++++|+||||+||||+|+.+|+..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l 231 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL 231 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH
Confidence 568999999999999885 3589999999999999999999999986
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=1.6e-22 Score=233.55 Aligned_cols=312 Identities=21% Similarity=0.191 Sum_probs=150.6
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCccc-ccchhhhccCcC
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASIT-ELPEELKLLVNL 296 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~-~lp~~i~~L~~L 296 (594)
.+++|+.|+|++|.....+|...+..+++|++|++++| .+++.+|. +.+. +|++|++++|.+. .+|..++++++|
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~p~--~~l~-~L~~L~Ls~n~~~~~~p~~~~~l~~L 166 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN-NFTGSIPR--GSIP-NLETLDLSNNMLSGEIPNDIGSFSSL 166 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-ccccccCc--cccC-CCCEEECcCCcccccCChHHhcCCCC
Confidence 56667777773333223566665556666666666666 55334443 2344 6666666666554 455556666666
Q ss_pred cEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCc-------cccC--CcccchHHhcCCCCCcEEEEEE
Q 007656 297 KCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDS-------VLFG--GGEVLIQELLGLKYLEVLELTL 367 (594)
Q Consensus 297 ~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~-------~~~~--~~~~~~~~l~~L~~L~~L~l~~ 367 (594)
++|++++|.....+|.. ++++++|++|++++|.+....+..-++ .... -.+..+..++++++|+.|+++.
T Consensus 167 ~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 245 (968)
T PLN00113 167 KVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245 (968)
T ss_pred CEEECccCcccccCChh-hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence 66666665323344543 556666666666655543210000000 0000 0001333344444455544444
Q ss_pred cchhhHHHHhcCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcc
Q 007656 368 GSYHALQILLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLH 447 (594)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~ 447 (594)
|.... .++.....+++|+.|+++.+.... . ....+..+++|+.|++++|..... .|.++. .+++|+
T Consensus 246 n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~-~-~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~---------~l~~L~ 311 (968)
T PLN00113 246 NNLTG--PIPSSLGNLKNLQYLFLYQNKLSG-P-IPPSIFSLQKLISLDLSDNSLSGE-IPELVI---------QLQNLE 311 (968)
T ss_pred ceecc--ccChhHhCCCCCCEEECcCCeeec-c-CchhHhhccCcCEEECcCCeeccC-CChhHc---------CCCCCc
Confidence 43221 001111112244444442222221 0 111344445555555555433322 222222 455566
Q ss_pred eEeEecCCCCcccc-ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCCCCccC
Q 007656 448 CVRIEQCHKLKDVT-FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKPLPF 526 (594)
Q Consensus 448 ~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~l 526 (594)
.|++++|.....+| .+..+++|+.|++++|.....++ ..++.+++|+.|++++|.-...++.....+
T Consensus 312 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p------------~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~ 379 (968)
T PLN00113 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP------------KNLGKHNNLTVLDLSTNNLTGEIPEGLCSS 379 (968)
T ss_pred EEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC------------hHHhCCCCCcEEECCCCeeEeeCChhHhCc
Confidence 66665544333333 35556666666666553322222 245566677777777664333444444456
Q ss_pred CCccEEeecccCCCCCCCCCCcC-CcCcceEEEcc
Q 007656 527 THLKEISVGYCRNLKKLPLDSNS-AKERKFVIRGE 560 (594)
Q Consensus 527 ~~L~~L~i~~C~~L~~lp~~~~~-~~L~~l~I~~~ 560 (594)
++|+.|++++|+-...+|..... ++|+.+.+.+|
T Consensus 380 ~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n 414 (968)
T PLN00113 380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414 (968)
T ss_pred CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC
Confidence 67777777776544455543332 77888887766
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=3.6e-24 Score=213.58 Aligned_cols=312 Identities=18% Similarity=0.239 Sum_probs=219.9
Q ss_pred chhHHHHHHHHhhccCCCCCceEEEeeCCCCcccccccccccc--cccCchhhcCCCcccEEEccCCcCcccccCchHHh
Q 007656 191 GKTTLLTHINNKFLESPTNFDCVIWVPTCPHLHTLFLASNNSL--QRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSE 268 (594)
Q Consensus 191 gKttl~~~~~~~~~~~~~~f~~~~w~p~~~~L~~L~L~~~~~l--~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~ 268 (594)
.|..-++...|+...+-+... .+|.||.+++ ..|.+ ..+|.. +-.+..|..|||++| .+ ...|..+..
T Consensus 55 qkLEHLs~~HN~L~~vhGELs------~Lp~LRsv~~-R~N~LKnsGiP~d-iF~l~dLt~lDLShN-qL-~EvP~~LE~ 124 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGELS------DLPRLRSVIV-RDNNLKNSGIPTD-IFRLKDLTILDLSHN-QL-REVPTNLEY 124 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhhc------cchhhHHHhh-hccccccCCCCch-hcccccceeeecchh-hh-hhcchhhhh
Confidence 344444455555533333333 7889999998 44444 347877 557899999999999 99 999999999
Q ss_pred hhhcCcEEEccCCcccccch-hhhccCcCcEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCc
Q 007656 269 LGSSLELLDISYASITELPE-ELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGG 347 (594)
Q Consensus 269 l~~~L~~L~ls~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 347 (594)
-+ ++-.|+||+|+|..+|. -+.+|+.|-+|||++| .+..+|+. +..|.+|++|.+++|....
T Consensus 125 AK-n~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~h-------------- 187 (1255)
T KOG0444|consen 125 AK-NSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLNH-------------- 187 (1255)
T ss_pred hc-CcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhhH--------------
Confidence 88 99999999999999997 5678999999999999 78999997 8899999999999998765
Q ss_pred ccchHHhcCCCCCcEEEEEEcchhhHHHHhcCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeee
Q 007656 348 EVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELK 427 (594)
Q Consensus 348 ~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~ 427 (594)
.....+.++++|+.|.++.... ....++.....+.+|..+++++++++. +|. .+..+++|+.|++++|...+ +.
T Consensus 188 -fQLrQLPsmtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPe--cly~l~~LrrLNLS~N~ite-L~ 261 (1255)
T KOG0444|consen 188 -FQLRQLPSMTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSENNLPI-VPE--CLYKLRNLRRLNLSGNKITE-LN 261 (1255)
T ss_pred -HHHhcCccchhhhhhhcccccc-hhhcCCCchhhhhhhhhccccccCCCc-chH--HHhhhhhhheeccCcCceee-ee
Confidence 2455577778888888875432 122333344445688899999999888 544 78888999999999965544 32
Q ss_pred ecccccccccCCCccCCCcceEeEecCCCCcccc-ccccCCCCceEeEccCcc-chhhhccCccCCCCcccCCCcccccc
Q 007656 428 IDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDVT-FLIFAPNLKSLDLSYCSS-MEEVISVGKFAETPEMMGHISPFENL 505 (594)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~~L 505 (594)
... ....+|++|+++. +.++.+| .+..++.|+.|.+.+|.. .+.+| +.++.+.+|
T Consensus 262 ~~~----------~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiP------------SGIGKL~~L 318 (1255)
T KOG0444|consen 262 MTE----------GEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIP------------SGIGKLIQL 318 (1255)
T ss_pred ccH----------HHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccCcccccCCc------------cchhhhhhh
Confidence 221 2467788888888 5777777 588888888888877742 22222 355566666
Q ss_pred ceecccccccccccCCCCccCCCccEEeecccCCCCCCCCCCcC-CcCcceEEEcc
Q 007656 506 QSLHLSQLPALKSIYWKPLPFTHLKEISVGYCRNLKKLPLDSNS-AKERKFVIRGE 560 (594)
Q Consensus 506 ~~L~L~~~~~L~~l~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~-~~L~~l~I~~~ 560 (594)
+.+...++ +|+-.|.+...|+.|+.|.+. |+.|-.||..... +.|+.++++..
T Consensus 319 evf~aanN-~LElVPEglcRC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 319 EVFHAANN-KLELVPEGLCRCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred HHHHhhcc-ccccCchhhhhhHHHHHhccc-ccceeechhhhhhcCCcceeeccCC
Confidence 66666554 555555555556666666553 4556666655544 55566665544
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=6.7e-22 Score=228.48 Aligned_cols=111 Identities=22% Similarity=0.366 Sum_probs=69.0
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCccc-ccchhhhccCcC
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASIT-ELPEELKLLVNL 296 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~-~lp~~i~~L~~L 296 (594)
.+++|++|++++|.....+|.. ++++++|++|++++| .+++.+|..++.+. +|++|++++|.+. .+|..++++++|
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L 238 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASN-QLVGQIPRELGQMK-SLKWIYLGYNNLSGEIPYEIGGLTSL 238 (968)
T ss_pred cCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCC-CCcCcCChHHcCcC-CccEEECcCCccCCcCChhHhcCCCC
Confidence 5667777777333323344444 666777777777776 55345666666666 7777777776655 566666677777
Q ss_pred cEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCC
Q 007656 297 KCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWF 332 (594)
Q Consensus 297 ~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~ 332 (594)
++|++++|.....+|.. ++++++|++|++++|.+.
T Consensus 239 ~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 239 NHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred CEEECcCceeccccChh-HhCCCCCCEEECcCCeee
Confidence 77777666333345554 666667777776666554
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=9.9e-22 Score=227.41 Aligned_cols=286 Identities=22% Similarity=0.295 Sum_probs=143.5
Q ss_pred CCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCC-cccccchhhhccCcCcE
Q 007656 220 PHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYA-SITELPEELKLLVNLKC 298 (594)
Q Consensus 220 ~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~-~l~~lp~~i~~L~~L~~ 298 (594)
.+|+.|++ .++.+..++.+ +..+++|++|+++++..+ +.+|. ++.+. +|++|++++| .+..+|..++++++|+.
T Consensus 611 ~~L~~L~L-~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l-~~ip~-ls~l~-~Le~L~L~~c~~L~~lp~si~~L~~L~~ 685 (1153)
T PLN03210 611 ENLVKLQM-QGSKLEKLWDG-VHSLTGLRNIDLRGSKNL-KEIPD-LSMAT-NLETLKLSDCSSLVELPSSIQYLNKLED 685 (1153)
T ss_pred cCCcEEEC-cCccccccccc-cccCCCCCEEECCCCCCc-CcCCc-cccCC-cccEEEecCCCCccccchhhhccCCCCE
Confidence 34555555 33444444444 445555555555554334 44443 44455 5555555555 45555555555555555
Q ss_pred EecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhc
Q 007656 299 LNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLS 378 (594)
Q Consensus 299 L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 378 (594)
|++++|..+..+|.+ + ++++|+.|++++|..... .+ ...++|+.|+++.+.+..++...
T Consensus 686 L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~---------------~p---~~~~nL~~L~L~~n~i~~lP~~~- 744 (1153)
T PLN03210 686 LDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKS---------------FP---DISTNISWLDLDETAIEEFPSNL- 744 (1153)
T ss_pred EeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccc---------------cc---cccCCcCeeecCCCccccccccc-
Confidence 555555555555553 2 455555555555543220 00 01234444444444332222111
Q ss_pred CchhhhcceeEEE-EeCCCcc-----cccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEe
Q 007656 379 SNKLKSCIRSLYL-HLTGDTA-----SIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIE 452 (594)
Q Consensus 379 ~~~~~~~L~~L~L-~~~~~~~-----~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~ 452 (594)
.+.+|+.|.+ ++..... .+ .......+++|+.|++++|..+..+ |..+. .+++|+.|+|+
T Consensus 745 ---~l~~L~~L~l~~~~~~~l~~~~~~l-~~~~~~~~~sL~~L~Ls~n~~l~~l-P~si~---------~L~~L~~L~Ls 810 (1153)
T PLN03210 745 ---RLENLDELILCEMKSEKLWERVQPL-TPLMTMLSPSLTRLFLSDIPSLVEL-PSSIQ---------NLHKLEHLEIE 810 (1153)
T ss_pred ---cccccccccccccchhhcccccccc-chhhhhccccchheeCCCCCCcccc-Chhhh---------CCCCCCEEECC
Confidence 1223444433 2111000 00 0001112346666666666555543 22222 46666666666
Q ss_pred cCCCCccccccccCCCCceEeEccCccchhhhccCc--------cCCCCcccCCCccccccceecccccccccccCCCCc
Q 007656 453 QCHKLKDVTFLIFAPNLKSLDLSYCSSMEEVISVGK--------FAETPEMMGHISPFENLQSLHLSQLPALKSIYWKPL 524 (594)
Q Consensus 453 ~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~--------~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~ 524 (594)
+|+.++.+|....+++|+.|+|++|..+..++.... .......+..+..+++|+.|++.+|++++.++....
T Consensus 811 ~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~ 890 (1153)
T PLN03210 811 NCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS 890 (1153)
T ss_pred CCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccc
Confidence 666666666444566666666666655544432100 000111223556677777777777777777777666
Q ss_pred cCCCccEEeecccCCCCCCCC
Q 007656 525 PFTHLKEISVGYCRNLKKLPL 545 (594)
Q Consensus 525 ~l~~L~~L~i~~C~~L~~lp~ 545 (594)
.+++|+.+++++|++|+.++.
T Consensus 891 ~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 891 KLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred cccCCCeeecCCCcccccccC
Confidence 777777777777777776554
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=9.9e-23 Score=202.07 Aligned_cols=295 Identities=19% Similarity=0.224 Sum_probs=202.3
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccccch-hhhccCc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITELPE-ELKLLVN 295 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~ 295 (594)
.++.||+||| +.|.+.+++...|..-.++++|+|++| .| +.+ -..|..+. +|-+|.|+.|+++.+|. .|.+|++
T Consensus 147 ~l~alrslDL-SrN~is~i~~~sfp~~~ni~~L~La~N-~I-t~l~~~~F~~ln-sL~tlkLsrNrittLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 147 ALPALRSLDL-SRNLISEIPKPSFPAKVNIKKLNLASN-RI-TTLETGHFDSLN-SLLTLKLSRNRITTLPQRSFKRLPK 222 (873)
T ss_pred hHhhhhhhhh-hhchhhcccCCCCCCCCCceEEeeccc-cc-cccccccccccc-hheeeecccCcccccCHHHhhhcch
Confidence 4567777777 666677777666666677777777777 77 655 45566777 77777777777777776 6666777
Q ss_pred CcEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHH
Q 007656 296 LKCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQI 375 (594)
Q Consensus 296 L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 375 (594)
|+.|+|..| .+..+..-.|.+|++|+.|.+..|.+....-+ .+..|.++++|++..|....+..
T Consensus 223 L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL~DG---------------~Fy~l~kme~l~L~~N~l~~vn~ 286 (873)
T KOG4194|consen 223 LESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG---------------AFYGLEKMEHLNLETNRLQAVNE 286 (873)
T ss_pred hhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccccCc---------------ceeeecccceeecccchhhhhhc
Confidence 777777777 56655443477777777777777776542211 26677778888888777654432
Q ss_pred HhcCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCC
Q 007656 376 LLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCH 455 (594)
Q Consensus 376 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~ 455 (594)
- ....++.|+.|+++.+.... + .+..++.+++|+.|+|++|...+ +++..+. .+..|+.|.|++ +
T Consensus 287 g--~lfgLt~L~~L~lS~NaI~r-i-h~d~WsftqkL~~LdLs~N~i~~-l~~~sf~---------~L~~Le~LnLs~-N 351 (873)
T KOG4194|consen 287 G--WLFGLTSLEQLDLSYNAIQR-I-HIDSWSFTQKLKELDLSSNRITR-LDEGSFR---------VLSQLEELNLSH-N 351 (873)
T ss_pred c--cccccchhhhhccchhhhhe-e-ecchhhhcccceeEecccccccc-CChhHHH---------HHHHhhhhcccc-c
Confidence 1 11223477778887777666 5 55577777888888888754443 4444443 578888888888 5
Q ss_pred CCcccc--ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCCCCc-cCCCccEE
Q 007656 456 KLKDVT--FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKPL-PFTHLKEI 532 (594)
Q Consensus 456 ~l~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~-~l~~L~~L 532 (594)
.+..+. .+..+.+|+.|+|++| .+.-.+++. ...+..+|+|+.|.+.++ +++.|+.... .+++|+.|
T Consensus 352 si~~l~e~af~~lssL~~LdLr~N-~ls~~IEDa--------a~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~L 421 (873)
T KOG4194|consen 352 SIDHLAEGAFVGLSSLHKLDLRSN-ELSWCIEDA--------AVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHL 421 (873)
T ss_pred chHHHHhhHHHHhhhhhhhcCcCC-eEEEEEecc--------hhhhccchhhhheeecCc-eeeecchhhhccCccccee
Confidence 777775 4777888899998888 444333321 125667999999999997 8999987654 59999999
Q ss_pred eecccCCCCCCCCCCcC-CcCcceEEE
Q 007656 533 SVGYCRNLKKLPLDSNS-AKERKFVIR 558 (594)
Q Consensus 533 ~i~~C~~L~~lp~~~~~-~~L~~l~I~ 558 (594)
++.+.+ +.++-.+... ..|++|.+.
T Consensus 422 dL~~Na-iaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 422 DLGDNA-IASIQPNAFEPMELKELVMN 447 (873)
T ss_pred cCCCCc-ceeecccccccchhhhhhhc
Confidence 998854 5665444332 567776543
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=4.2e-23 Score=204.65 Aligned_cols=295 Identities=20% Similarity=0.202 Sum_probs=186.0
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccccch-hhhccCc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITELPE-ELKLLVN 295 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~ 295 (594)
++++|+.+.+ .+|.++.+|.. .+...+|+.|+|.+| .| .++ .+++..+. .|+.||||.|.|+++|. ++..-.+
T Consensus 100 nl~nLq~v~l-~~N~Lt~IP~f-~~~sghl~~L~L~~N-~I-~sv~se~L~~l~-alrslDLSrN~is~i~~~sfp~~~n 174 (873)
T KOG4194|consen 100 NLPNLQEVNL-NKNELTRIPRF-GHESGHLEKLDLRHN-LI-SSVTSEELSALP-ALRSLDLSRNLISEIPKPSFPAKVN 174 (873)
T ss_pred cCCcceeeee-ccchhhhcccc-cccccceeEEeeecc-cc-ccccHHHHHhHh-hhhhhhhhhchhhcccCCCCCCCCC
Confidence 6666666666 66666666653 233345666666666 66 444 44555565 66666666666666664 4555556
Q ss_pred CcEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHH
Q 007656 296 LKCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQI 375 (594)
Q Consensus 296 L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 375 (594)
+++|+|++| .++.+..+-|.++.+|-.|.+++|.+... .+..+++|++|+.|++..|.+..++.
T Consensus 175 i~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittL---------------p~r~Fk~L~~L~~LdLnrN~irive~ 238 (873)
T KOG4194|consen 175 IKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTL---------------PQRSFKRLPKLESLDLNRNRIRIVEG 238 (873)
T ss_pred ceEEeeccc-cccccccccccccchheeeecccCccccc---------------CHHHhhhcchhhhhhccccceeeehh
Confidence 666666666 55665555566666666666666666542 23335555555555555444322211
Q ss_pred Hhc----------------------CchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeeccccc
Q 007656 376 LLS----------------------SNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEI 433 (594)
Q Consensus 376 ~~~----------------------~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~ 433 (594)
+.. ..-.+.+++.|+|..+.+.. + ....+.+++.|+.|++++|.+- .+.++...
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~-v-n~g~lfgLt~L~~L~lS~NaI~-rih~d~Ws- 314 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA-V-NEGWLFGLTSLEQLDLSYNAIQ-RIHIDSWS- 314 (873)
T ss_pred hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh-h-hcccccccchhhhhccchhhhh-eeecchhh-
Confidence 100 00123466667775555555 3 2335667788888888875443 34444333
Q ss_pred ccccCCCccCCCcceEeEecCCCCcccc--ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceeccc
Q 007656 434 VRKRREPFVFRSLHCVRIEQCHKLKDVT--FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLS 511 (594)
Q Consensus 434 ~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 511 (594)
..++|+.|+|++ +.++.++ .+..|..|++|+|++| .+..+-. ..+..+.+|+.|+|+
T Consensus 315 --------ftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e-----------~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 315 --------FTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSHN-SIDHLAE-----------GAFVGLSSLHKLDLR 373 (873)
T ss_pred --------hcccceeEeccc-cccccCChhHHHHHHHhhhhccccc-chHHHHh-----------hHHHHhhhhhhhcCc
Confidence 688899999988 5788776 4778888999999988 6666644 367788999999999
Q ss_pred ccccccc-cCCC---CccCCCccEEeecccCCCCCCCCCCcC--CcCcceEEEcc
Q 007656 512 QLPALKS-IYWK---PLPFTHLKEISVGYCRNLKKLPLDSNS--AKERKFVIRGE 560 (594)
Q Consensus 512 ~~~~L~~-l~~~---~~~l~~L~~L~i~~C~~L~~lp~~~~~--~~L~~l~I~~~ 560 (594)
++. +.- |... ...+|+|++|.+.+ ++|+.+|..... .+|+.|++.+.
T Consensus 374 ~N~-ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 374 SNE-LSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred CCe-EEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCC
Confidence 863 322 2221 22589999999998 689999977655 78888877653
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=4.1e-22 Score=198.97 Aligned_cols=276 Identities=21% Similarity=0.178 Sum_probs=226.8
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHH-hhhhcCcEEEccCCcccccchhhhccCcC
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMS-ELGSSLELLDISYASITELPEELKLLVNL 296 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~-~l~~~L~~L~ls~~~l~~lp~~i~~L~~L 296 (594)
.+..|.+|+| +.|.+++.|.. +..-+++-+|+|++| +| ..+|.+++ +|. .|-+||||+|++..||..+.+|.+|
T Consensus 101 ~l~dLt~lDL-ShNqL~EvP~~-LE~AKn~iVLNLS~N-~I-etIPn~lfinLt-DLLfLDLS~NrLe~LPPQ~RRL~~L 175 (1255)
T KOG0444|consen 101 RLKDLTILDL-SHNQLREVPTN-LEYAKNSIVLNLSYN-NI-ETIPNSLFINLT-DLLFLDLSNNRLEMLPPQIRRLSML 175 (1255)
T ss_pred ccccceeeec-chhhhhhcchh-hhhhcCcEEEEcccC-cc-ccCCchHHHhhH-hHhhhccccchhhhcCHHHHHHhhh
Confidence 6889999999 88899999998 899999999999999 99 99987754 787 9999999999999999999999999
Q ss_pred cEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHH
Q 007656 297 KCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQIL 376 (594)
Q Consensus 297 ~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 376 (594)
++|+|++|+ +..+.-..+-.|++|++|++++.+-.- ...|..+..|.+|..++++.|....+++-
T Consensus 176 qtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl--------------~N~Ptsld~l~NL~dvDlS~N~Lp~vPec 240 (1255)
T KOG0444|consen 176 QTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTL--------------DNIPTSLDDLHNLRDVDLSENNLPIVPEC 240 (1255)
T ss_pred hhhhcCCCh-hhHHHHhcCccchhhhhhhcccccchh--------------hcCCCchhhhhhhhhccccccCCCcchHH
Confidence 999999995 443332224567889999999876553 23566688889999999999888777765
Q ss_pred hcCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCC
Q 007656 377 LSSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHK 456 (594)
Q Consensus 377 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~ 456 (594)
.... .+|+.|+|+-+.++. + ........+|++|+++.|.... .|+.+. .++.|+.|.+.+ +.
T Consensus 241 ly~l---~~LrrLNLS~N~ite-L--~~~~~~W~~lEtLNlSrNQLt~--LP~avc---------KL~kL~kLy~n~-Nk 302 (1255)
T KOG0444|consen 241 LYKL---RNLRRLNLSGNKITE-L--NMTEGEWENLETLNLSRNQLTV--LPDAVC---------KLTKLTKLYANN-NK 302 (1255)
T ss_pred Hhhh---hhhheeccCcCceee-e--eccHHHHhhhhhhccccchhcc--chHHHh---------hhHHHHHHHhcc-Cc
Confidence 5443 489999997676666 3 2255566899999999976655 566665 799999999987 44
Q ss_pred Cc--ccc-ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCCCCccCCCccEEe
Q 007656 457 LK--DVT-FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKPLPFTHLKEIS 533 (594)
Q Consensus 457 l~--~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~l~~L~~L~ 533 (594)
++ .+| .++.+.+|+.+...+| .++-+|. .+..+++|+.|.|+++ .|-.+|...+-+|.|+.|+
T Consensus 303 L~FeGiPSGIGKL~~Levf~aanN-~LElVPE------------glcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLD 368 (1255)
T KOG0444|consen 303 LTFEGIPSGIGKLIQLEVFHAANN-KLELVPE------------GLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLD 368 (1255)
T ss_pred ccccCCccchhhhhhhHHHHhhcc-ccccCch------------hhhhhHHHHHhccccc-ceeechhhhhhcCCcceee
Confidence 44 366 5999999999999988 7777776 7889999999999976 7889999989999999999
Q ss_pred ecccCCCCCCCC
Q 007656 534 VGYCRNLKKLPL 545 (594)
Q Consensus 534 i~~C~~L~~lp~ 545 (594)
+++.|+|.-=|.
T Consensus 369 lreNpnLVMPPK 380 (1255)
T KOG0444|consen 369 LRENPNLVMPPK 380 (1255)
T ss_pred ccCCcCccCCCC
Confidence 999999887554
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=6e-20 Score=174.88 Aligned_cols=313 Identities=20% Similarity=0.214 Sum_probs=186.5
Q ss_pred EecCCCchhHHHHHHHHhhccCCCCCceEEEeeCCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCc
Q 007656 185 YGMGGVGKTTLLTHINNKFLESPTNFDCVIWVPTCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPL 264 (594)
Q Consensus 185 ~G~gG~gKttl~~~~~~~~~~~~~~f~~~~w~p~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~ 264 (594)
-.|||+.+..++-.-.|++ ..-..|. +|..|..|++ +.+.+..+|......++++.+||+.+| ++ +++|+
T Consensus 200 ~~lg~l~~L~~LyL~~Nki-~~lPef~------gcs~L~Elh~-g~N~i~~lpae~~~~L~~l~vLDLRdN-kl-ke~Pd 269 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKI-RFLPEFP------GCSLLKELHV-GENQIEMLPAEHLKHLNSLLVLDLRDN-KL-KEVPD 269 (565)
T ss_pred hhhcchhhhHHHHhhhccc-ccCCCCC------ccHHHHHHHh-cccHHHhhHHHHhcccccceeeecccc-cc-ccCch
Confidence 3688998888887777777 4445787 8999999999 999999999998889999999999999 99 99999
Q ss_pred hHHhhhhcCcEEEccCCcccccchhhhccCcCcEEecCCCCCCCCcchhhhcCCC--CCcEEEe--cCCCCCccccCCCC
Q 007656 265 AMSELGSSLELLDISYASITELPEELKLLVNLKCLNLRWTDTLNKIPRQLISILS--WLRVLRM--LGTGWFNFLEAPED 340 (594)
Q Consensus 265 ~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~--~L~~L~l--~~~~~~~~~~~~~~ 340 (594)
+++.+. +|.+||+|+|.|+.+|.+++++ +|+.|-+.+| -+..+-.+++++=+ =|++|+= ..-+....+.. .
T Consensus 270 e~clLr-sL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGN-PlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~--~ 344 (565)
T KOG0472|consen 270 EICLLR-SLERLDLSNNDISSLPYSLGNL-HLKFLALEGN-PLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGG--T 344 (565)
T ss_pred HHHHhh-hhhhhcccCCccccCCcccccc-eeeehhhcCC-chHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccc--c
Confidence 999999 9999999999999999999999 9999999999 46766665443221 1222221 11111110000 0
Q ss_pred ccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcCchhhhcceeEEEEeCCCccccc-------------------
Q 007656 341 SVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLHLTGDTASII------------------- 401 (594)
Q Consensus 341 ~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~------------------- 401 (594)
+...............+.+.+.|+++....+.++.-........-....+++-+.+.. +|
T Consensus 345 e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~e-lPk~L~~lkelvT~l~lsnn~ 423 (565)
T KOG0472|consen 345 ETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCE-LPKRLVELKELVTDLVLSNNK 423 (565)
T ss_pred cccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhh-hhhhhHHHHHHHHHHHhhcCc
Confidence 0000111122333444455555555543332222111110000012222222222222 10
Q ss_pred ---ccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCccccc-cccCCCCceEeEccC
Q 007656 402 ---DATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDVTF-LIFAPNLKSLDLSYC 477 (594)
Q Consensus 402 ---~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~ 477 (594)
....++.+++|..|++++ +.+.+++.++. .+..|+.|+|+. +....+|- +-.+..|+.+-.+++
T Consensus 424 isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~----------~lv~Lq~LnlS~-NrFr~lP~~~y~lq~lEtllas~n 491 (565)
T KOG0472|consen 424 ISFVPLELSQLQKLTFLDLSN-NLLNDLPEEMG----------SLVRLQTLNLSF-NRFRMLPECLYELQTLETLLASNN 491 (565)
T ss_pred cccchHHHHhhhcceeeeccc-chhhhcchhhh----------hhhhhheecccc-cccccchHHHhhHHHHHHHHhccc
Confidence 111344444455555544 23333332221 233455555554 23444442 222222222222222
Q ss_pred ccchhhhccCccCCCCcccCCCccccccceecccccccccccCCCCccCCCccEEeecccC
Q 007656 478 SSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKPLPFTHLKEISVGYCR 538 (594)
Q Consensus 478 ~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~l~~L~~L~i~~C~ 538 (594)
.+..++. ..++.+.+|.+|++.++ .+..+|...+.|++|++|++++.|
T Consensus 492 -qi~~vd~-----------~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 492 -QIGSVDP-----------SGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred -cccccCh-----------HHhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCc
Confidence 4444332 24788899999999887 799999999999999999999876
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=1.6e-20 Score=178.73 Aligned_cols=272 Identities=22% Similarity=0.259 Sum_probs=207.8
Q ss_pred CCceEEEeeCCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccch
Q 007656 209 NFDCVIWVPTCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPE 288 (594)
Q Consensus 209 ~f~~~~w~p~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~ 288 (594)
.++.-.|. .-..+..|.+ .++.+..+.+. +.++..|.+|++.+| .+ ..+|++|+.+. .++.|++++|++..+|.
T Consensus 35 ~~e~e~wW-~qv~l~~lil-s~N~l~~l~~d-l~nL~~l~vl~~~~n-~l-~~lp~aig~l~-~l~~l~vs~n~ls~lp~ 108 (565)
T KOG0472|consen 35 TGEGENWW-EQVDLQKLIL-SHNDLEVLRED-LKNLACLTVLNVHDN-KL-SQLPAAIGELE-ALKSLNVSHNKLSELPE 108 (565)
T ss_pred ccchhhhh-hhcchhhhhh-ccCchhhccHh-hhcccceeEEEeccc-hh-hhCCHHHHHHH-HHHHhhcccchHhhccH
Confidence 34444555 5677888999 67777777777 899999999999999 99 99999999999 99999999999999999
Q ss_pred hhhccCcCcEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEc
Q 007656 289 ELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLG 368 (594)
Q Consensus 289 ~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 368 (594)
.++.+.+|..|+.+.| .+.++|++ ++.+..|..++..+|++.+ .++.+.++.+|..+.+..+
T Consensus 109 ~i~s~~~l~~l~~s~n-~~~el~~~-i~~~~~l~dl~~~~N~i~s----------------lp~~~~~~~~l~~l~~~~n 170 (565)
T KOG0472|consen 109 QIGSLISLVKLDCSSN-ELKELPDS-IGRLLDLEDLDATNNQISS----------------LPEDMVNLSKLSKLDLEGN 170 (565)
T ss_pred HHhhhhhhhhhhcccc-ceeecCch-HHHHhhhhhhhcccccccc----------------CchHHHHHHHHHHhhcccc
Confidence 9999999999999999 78999987 9999999999999999886 6777888888888888777
Q ss_pred chhhHHHHhcCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcce
Q 007656 369 SYHALQILLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHC 448 (594)
Q Consensus 369 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~ 448 (594)
.......-.- .++.|++|+..-+.+.. +| ..++.+.+|+.|++..|.... .|++ ..+..|++
T Consensus 171 ~l~~l~~~~i---~m~~L~~ld~~~N~L~t-lP--~~lg~l~~L~~LyL~~Nki~~--lPef----------~gcs~L~E 232 (565)
T KOG0472|consen 171 KLKALPENHI---AMKRLKHLDCNSNLLET-LP--PELGGLESLELLYLRRNKIRF--LPEF----------PGCSLLKE 232 (565)
T ss_pred chhhCCHHHH---HHHHHHhcccchhhhhc-CC--hhhcchhhhHHHHhhhccccc--CCCC----------CccHHHHH
Confidence 6644333221 24467777665555555 33 367777888888888765443 3433 35777777
Q ss_pred EeEecCCCCcccc--ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCCCCccC
Q 007656 449 VRIEQCHKLKDVT--FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKPLPF 526 (594)
Q Consensus 449 L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~l 526 (594)
|++.. +.+..+| .+.++++|..|++++| .++++|. .+.-+.+|+.|+++++ .+..+|...+++
T Consensus 233 lh~g~-N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pd------------e~clLrsL~rLDlSNN-~is~Lp~sLgnl 297 (565)
T KOG0472|consen 233 LHVGE-NQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPD------------EICLLRSLERLDLSNN-DISSLPYSLGNL 297 (565)
T ss_pred HHhcc-cHHHhhHHHHhcccccceeeecccc-ccccCch------------HHHHhhhhhhhcccCC-ccccCCcccccc
Confidence 77776 5677776 2557777888888777 6666665 5666777777887776 677777777776
Q ss_pred CCccEEeecccC
Q 007656 527 THLKEISVGYCR 538 (594)
Q Consensus 527 ~~L~~L~i~~C~ 538 (594)
.|+.|.+.+.|
T Consensus 298 -hL~~L~leGNP 308 (565)
T KOG0472|consen 298 -HLKFLALEGNP 308 (565)
T ss_pred -eeeehhhcCCc
Confidence 77777776655
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.73 E-value=1.6e-19 Score=188.81 Aligned_cols=235 Identities=18% Similarity=0.219 Sum_probs=135.9
Q ss_pred cCcEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCc-------cccCCcccchHHhcCCCCCcEEEEEE
Q 007656 295 NLKCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDS-------VLFGGGEVLIQELLGLKYLEVLELTL 367 (594)
Q Consensus 295 ~L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~L~~L~~L~l~~ 367 (594)
+|++++++.+ ++..+| ++++.+.+|+.+...+|.+.......... +........+..+..+++|++|++..
T Consensus 242 nl~~~dis~n-~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 242 NLQYLDISHN-NLSNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred cceeeecchh-hhhcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence 4555555555 455566 34666666666666665553210000000 00000112333445566666666665
Q ss_pred cchhhHHHHhcCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcc
Q 007656 368 GSYHALQILLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLH 447 (594)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~ 447 (594)
|....++..... .....|+.|..+++.+.. .+ ...=..++.|+.|++.+|......+|-. ..+.+|+
T Consensus 320 N~L~~lp~~~l~-v~~~~l~~ln~s~n~l~~-lp-~~~e~~~~~Lq~LylanN~Ltd~c~p~l----------~~~~hLK 386 (1081)
T KOG0618|consen 320 NNLPSLPDNFLA-VLNASLNTLNVSSNKLST-LP-SYEENNHAALQELYLANNHLTDSCFPVL----------VNFKHLK 386 (1081)
T ss_pred ccccccchHHHh-hhhHHHHHHhhhhccccc-cc-cccchhhHHHHHHHHhcCcccccchhhh----------cccccee
Confidence 554443331111 001123333333333333 21 1122234567777777765544333322 3688899
Q ss_pred eEeEecCCCCcccc--ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCCCCcc
Q 007656 448 CVRIEQCHKLKDVT--FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKPLP 525 (594)
Q Consensus 448 ~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~ 525 (594)
.|+|++ +.+..+| .+.+++.|++|+|++| .++.++. .+..+++|++|...++ .+...| +...
T Consensus 387 VLhLsy-NrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~------------tva~~~~L~tL~ahsN-~l~~fP-e~~~ 450 (1081)
T KOG0618|consen 387 VLHLSY-NRLNSFPASKLRKLEELEELNLSGN-KLTTLPD------------TVANLGRLHTLRAHSN-QLLSFP-ELAQ 450 (1081)
T ss_pred eeeecc-cccccCCHHHHhchHHhHHHhcccc-hhhhhhH------------HHHhhhhhHHHhhcCC-ceeech-hhhh
Confidence 999998 6788777 4888999999999999 7777765 6778888888888776 677777 6667
Q ss_pred CCCccEEeecccCCCCC--CCCCCcCCcCcceEEEccH
Q 007656 526 FTHLKEISVGYCRNLKK--LPLDSNSAKERKFVIRGEE 561 (594)
Q Consensus 526 l~~L~~L~i~~C~~L~~--lp~~~~~~~L~~l~I~~~~ 561 (594)
+|.|+.++++ |++|+. +|...-.++|++++++|..
T Consensus 451 l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 451 LPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred cCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCc
Confidence 8888888886 677877 4444333788888888764
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.65 E-value=6.5e-18 Score=176.89 Aligned_cols=188 Identities=17% Similarity=0.162 Sum_probs=128.1
Q ss_pred hHHhcCCCCCcEEEEEEcchhhHHHHhcCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecc
Q 007656 351 IQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDY 430 (594)
Q Consensus 351 ~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~ 430 (594)
++.+..+.+|+.+.+..|....+..-. ...++|++|.+..+.+.. +++ .+.+.++|++|++..|+... ++...
T Consensus 257 p~wi~~~~nle~l~~n~N~l~~lp~ri---~~~~~L~~l~~~~nel~y-ip~--~le~~~sL~tLdL~~N~L~~-lp~~~ 329 (1081)
T KOG0618|consen 257 PEWIGACANLEALNANHNRLVALPLRI---SRITSLVSLSAAYNELEY-IPP--FLEGLKSLRTLDLQSNNLPS-LPDNF 329 (1081)
T ss_pred hHHHHhcccceEecccchhHHhhHHHH---hhhhhHHHHHhhhhhhhh-CCC--cccccceeeeeeehhccccc-cchHH
Confidence 344444555555555555443322211 223356666665555555 322 66778899999999865443 33322
Q ss_pred cccc--------------cc--cCCCccCCCcceEeEecCCCCcc--ccccccCCCCceEeEccCccchhhhccCccCCC
Q 007656 431 TEIV--------------RK--RREPFVFRSLHCVRIEQCHKLKD--VTFLIFAPNLKSLDLSYCSSMEEVISVGKFAET 492 (594)
Q Consensus 431 ~~~~--------------~~--~~~~~~~~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 492 (594)
+... .. ......++.|+.|.+.+ +.+++ +|.+.++++|+.|+|++| .+..+|.
T Consensus 330 l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-N~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpa------- 400 (1081)
T KOG0618|consen 330 LAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-NHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPA------- 400 (1081)
T ss_pred HhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc-Ccccccchhhhccccceeeeeeccc-ccccCCH-------
Confidence 2211 00 11123566788889988 45655 567899999999999999 6666665
Q ss_pred CcccCCCccccccceecccccccccccCCCCccCCCccEEeecccCCCCCCCCCCcCCcCcceEEEcc
Q 007656 493 PEMMGHISPFENLQSLHLSQLPALKSIYWKPLPFTHLKEISVGYCRNLKKLPLDSNSAKERKFVIRGE 560 (594)
Q Consensus 493 ~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~L~~l~I~~~ 560 (594)
..+..++.|+.|+|+|+ .|+.++.....++.|+.|...+ ++|..+|...+.++|+.++|++.
T Consensus 401 ----s~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 401 ----SKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDLSCN 462 (1081)
T ss_pred ----HHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcC-CceeechhhhhcCcceEEecccc
Confidence 46788999999999998 7999998777899999997655 68999997777799999999865
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=9.1e-16 Score=165.68 Aligned_cols=75 Identities=15% Similarity=0.102 Sum_probs=44.4
Q ss_pred CCcceEeEecCCCCccccccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCCCC
Q 007656 444 RSLHCVRIEQCHKLKDVTFLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKP 523 (594)
Q Consensus 444 ~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~ 523 (594)
.+|+.|++++| .+..+|.. .++|+.|++++| .++.+|. .+.+|+.|+++++ .++.+|...
T Consensus 382 ~~L~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~N-~LssIP~---------------l~~~L~~L~Ls~N-qLt~LP~sl 441 (788)
T PRK15387 382 SGLKELIVSGN-RLTSLPVL--PSELKELMVSGN-RLTSLPM---------------LPSGLLSLSVYRN-QLTRLPESL 441 (788)
T ss_pred cccceEEecCC-cccCCCCc--ccCCCEEEccCC-cCCCCCc---------------chhhhhhhhhccC-cccccChHH
Confidence 45666666663 45555532 246666777666 3444322 1345666777765 566676665
Q ss_pred ccCCCccEEeecccC
Q 007656 524 LPFTHLKEISVGYCR 538 (594)
Q Consensus 524 ~~l~~L~~L~i~~C~ 538 (594)
..+++|+.|++++++
T Consensus 442 ~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 442 IHLSSETTVNLEGNP 456 (788)
T ss_pred hhccCCCeEECCCCC
Confidence 667777777777654
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.61 E-value=2.1e-15 Score=162.94 Aligned_cols=114 Identities=16% Similarity=0.130 Sum_probs=57.6
Q ss_pred CCcEEEEEEcchhhHHHHhcCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccC
Q 007656 359 YLEVLELTLGSYHALQILLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRR 438 (594)
Q Consensus 359 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~ 438 (594)
+|+.|+++.|.+..++.++ .+|+.|+++.+.+.. ++. ..++|+.|++++|.... + |.
T Consensus 343 ~Lq~LdLS~N~Ls~LP~lp------~~L~~L~Ls~N~L~~-LP~-----l~~~L~~LdLs~N~Lt~-L-P~--------- 399 (788)
T PRK15387 343 GLQELSVSDNQLASLPTLP------SELYKLWAYNNRLTS-LPA-----LPSGLKELIVSGNRLTS-L-PV--------- 399 (788)
T ss_pred ccceEecCCCccCCCCCCC------cccceehhhcccccc-Ccc-----cccccceEEecCCcccC-C-CC---------
Confidence 4555555555544433221 245555554344443 221 12356666666643322 1 11
Q ss_pred CCccCCCcceEeEecCCCCccccccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccc
Q 007656 439 EPFVFRSLHCVRIEQCHKLKDVTFLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLP 514 (594)
Q Consensus 439 ~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 514 (594)
.+++|+.|++++| .+..+|.+ +.+|+.|++++| .++.+|. .+..+++|+.|+|++++
T Consensus 400 ---l~s~L~~LdLS~N-~LssIP~l--~~~L~~L~Ls~N-qLt~LP~------------sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 400 ---LPSELKELMVSGN-RLTSLPML--PSGLLSLSVYRN-QLTRLPE------------SLIHLSSETTVNLEGNP 456 (788)
T ss_pred ---cccCCCEEEccCC-cCCCCCcc--hhhhhhhhhccC-cccccCh------------HHhhccCCCeEECCCCC
Confidence 2345666777663 45555532 335666666666 4555543 45566666777776653
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.55 E-value=7.8e-15 Score=159.48 Aligned_cols=244 Identities=19% Similarity=0.203 Sum_probs=133.7
Q ss_pred CcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCcEEe
Q 007656 221 HLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLKCLN 300 (594)
Q Consensus 221 ~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L~ 300 (594)
+...|++ ++..++.+|.. + .++|+.|++++| .+ ..+|..+. . +|++|++++|.++.+|..+. .+|+.|+
T Consensus 179 ~~~~L~L-~~~~LtsLP~~-I--p~~L~~L~Ls~N-~L-tsLP~~l~--~-nL~~L~Ls~N~LtsLP~~l~--~~L~~L~ 247 (754)
T PRK15370 179 NKTELRL-KILGLTTIPAC-I--PEQITTLILDNN-EL-KSLPENLQ--G-NIKTLYANSNQLTSIPATLP--DTIQEME 247 (754)
T ss_pred CceEEEe-CCCCcCcCCcc-c--ccCCcEEEecCC-CC-CcCChhhc--c-CCCEEECCCCccccCChhhh--ccccEEE
Confidence 4455666 55566666654 2 245677777777 67 66666543 3 67777777777777765443 3567777
Q ss_pred cCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcCc
Q 007656 301 LRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSN 380 (594)
Q Consensus 301 L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~ 380 (594)
+++| .+..+|.. +. ++|+.|++++|.+.. .+..+. ++|+.|+++.|.+..++..
T Consensus 248 Ls~N-~L~~LP~~-l~--s~L~~L~Ls~N~L~~----------------LP~~l~--~sL~~L~Ls~N~Lt~LP~~---- 301 (754)
T PRK15370 248 LSIN-RITELPER-LP--SALQSLDLFHNKISC----------------LPENLP--EELRYLSVYDNSIRTLPAH---- 301 (754)
T ss_pred CcCC-ccCcCChh-Hh--CCCCEEECcCCccCc----------------cccccC--CCCcEEECCCCccccCccc----
Confidence 7776 56666664 32 356777776665543 111121 3566666666655433211
Q ss_pred hhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCccc
Q 007656 381 KLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDV 460 (594)
Q Consensus 381 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l 460 (594)
...+|+.|++..+.+.. ++. .+ .++|+.|++++|.... + +.. .+++|+.|++++| .+..+
T Consensus 302 -lp~sL~~L~Ls~N~Lt~-LP~--~l--~~sL~~L~Ls~N~Lt~-L-P~~-----------l~~sL~~L~Ls~N-~L~~L 361 (754)
T PRK15370 302 -LPSGITHLNVQSNSLTA-LPE--TL--PPGLKTLEAGENALTS-L-PAS-----------LPPELQVLDVSKN-QITVL 361 (754)
T ss_pred -chhhHHHHHhcCCcccc-CCc--cc--cccceeccccCCcccc-C-Chh-----------hcCcccEEECCCC-CCCcC
Confidence 11256666664455544 321 11 2567777777654332 2 211 2356777777774 45555
Q ss_pred cccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCCCCc----cCCCccEEeecc
Q 007656 461 TFLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKPL----PFTHLKEISVGY 536 (594)
Q Consensus 461 ~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~----~l~~L~~L~i~~ 536 (594)
|. .-.++|++|+|++| .+..+|. .+ .++|+.|++++| ++..+|.... .+|++..|.+.+
T Consensus 362 P~-~lp~~L~~LdLs~N-~Lt~LP~------------~l--~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~ 424 (754)
T PRK15370 362 PE-TLPPTITTLDVSRN-ALTNLPE------------NL--PAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEY 424 (754)
T ss_pred Ch-hhcCCcCEEECCCC-cCCCCCH------------hH--HHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeC
Confidence 52 11356777777776 4444433 11 235667777765 4555554321 235666666666
Q ss_pred cC
Q 007656 537 CR 538 (594)
Q Consensus 537 C~ 538 (594)
.|
T Consensus 425 Np 426 (754)
T PRK15370 425 NP 426 (754)
T ss_pred CC
Confidence 54
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.52 E-value=2.6e-16 Score=150.15 Aligned_cols=108 Identities=26% Similarity=0.294 Sum_probs=94.2
Q ss_pred CcccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccC-Ccccccch-hhhccCcCc
Q 007656 221 HLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISY-ASITELPE-ELKLLVNLK 297 (594)
Q Consensus 221 ~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~-~~l~~lp~-~i~~L~~L~ 297 (594)
....+.| ..|.|+.+|+++|+.+++||.|||++| .| ..+ |+.|..+. .|..|-+-+ |+|+.+|. .|++|..|+
T Consensus 68 ~tveirL-dqN~I~~iP~~aF~~l~~LRrLdLS~N-~I-s~I~p~AF~GL~-~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 68 ETVEIRL-DQNQISSIPPGAFKTLHRLRRLDLSKN-NI-SFIAPDAFKGLA-SLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred cceEEEe-ccCCcccCChhhccchhhhceeccccc-ch-hhcChHhhhhhH-hhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 5567788 888999999999999999999999999 99 777 89999999 766666555 89999998 789999999
Q ss_pred EEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCc
Q 007656 298 CLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFN 333 (594)
Q Consensus 298 ~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~ 333 (594)
.|.+.-| ++..++.+++..|++|..|.+.+|.+..
T Consensus 144 rLllNan-~i~Cir~~al~dL~~l~lLslyDn~~q~ 178 (498)
T KOG4237|consen 144 RLLLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQS 178 (498)
T ss_pred HHhcChh-hhcchhHHHHHHhhhcchhcccchhhhh
Confidence 9999888 7888888889999999999999887764
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.49 E-value=2.9e-14 Score=155.08 Aligned_cols=227 Identities=18% Similarity=0.227 Sum_probs=164.0
Q ss_pred CCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCcEE
Q 007656 220 PHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLKCL 299 (594)
Q Consensus 220 ~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L 299 (594)
++|+.|++ ++|.++.+|...+ ++|++|++++| .+ ..+|..+. . +|+.|++++|.+..+|..+. .+|+.|
T Consensus 199 ~~L~~L~L-s~N~LtsLP~~l~---~nL~~L~Ls~N-~L-tsLP~~l~--~-~L~~L~Ls~N~L~~LP~~l~--s~L~~L 267 (754)
T PRK15370 199 EQITTLIL-DNNELKSLPENLQ---GNIKTLYANSN-QL-TSIPATLP--D-TIQEMELSINRITELPERLP--SALQSL 267 (754)
T ss_pred cCCcEEEe-cCCCCCcCChhhc---cCCCEEECCCC-cc-ccCChhhh--c-cccEEECcCCccCcCChhHh--CCCCEE
Confidence 47899999 7788999998743 58999999999 99 88987653 4 89999999999999998765 589999
Q ss_pred ecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcC
Q 007656 300 NLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSS 379 (594)
Q Consensus 300 ~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 379 (594)
++++| .+..+|.. +. ++|+.|++++|.+... +..+. ++|+.|+++.|....++..
T Consensus 268 ~Ls~N-~L~~LP~~-l~--~sL~~L~Ls~N~Lt~L----------------P~~lp--~sL~~L~Ls~N~Lt~LP~~--- 322 (754)
T PRK15370 268 DLFHN-KISCLPEN-LP--EELRYLSVYDNSIRTL----------------PAHLP--SGITHLNVQSNSLTALPET--- 322 (754)
T ss_pred ECcCC-ccCccccc-cC--CCCcEEECCCCccccC----------------cccch--hhHHHHHhcCCccccCCcc---
Confidence 99998 78999986 43 5899999999987652 11121 3567777777766544321
Q ss_pred chhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCcc
Q 007656 380 NKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKD 459 (594)
Q Consensus 380 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~ 459 (594)
...+|+.|.++.+.+.. ++. .+ .++|+.|++++|+... + |.. .+++|+.|+|++| .+..
T Consensus 323 --l~~sL~~L~Ls~N~Lt~-LP~--~l--~~sL~~L~Ls~N~L~~-L-P~~-----------lp~~L~~LdLs~N-~Lt~ 381 (754)
T PRK15370 323 --LPPGLKTLEAGENALTS-LPA--SL--PPELQVLDVSKNQITV-L-PET-----------LPPTITTLDVSRN-ALTN 381 (754)
T ss_pred --ccccceeccccCCcccc-CCh--hh--cCcccEEECCCCCCCc-C-Chh-----------hcCCcCEEECCCC-cCCC
Confidence 12488999885556655 422 23 2689999999976543 3 322 2468999999996 5667
Q ss_pred ccc-cccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccc
Q 007656 460 VTF-LIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLP 514 (594)
Q Consensus 460 l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 514 (594)
+|. +. ++|+.|++++| .+..+|. .++.....+|++..|.+.+++
T Consensus 382 LP~~l~--~sL~~LdLs~N-~L~~LP~--------sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 382 LPENLP--AALQIMQASRN-NLVRLPE--------SLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCHhHH--HHHHHHhhccC-CcccCch--------hHHHHhhcCCCccEEEeeCCC
Confidence 663 32 37899999998 5556543 111233456888889888875
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.44 E-value=3.4e-14 Score=156.97 Aligned_cols=285 Identities=22% Similarity=0.286 Sum_probs=188.0
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCC-cccccchhhhccCcC
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYA-SITELPEELKLLVNL 296 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~-~l~~lp~~i~~L~~L 296 (594)
.++.|++|||++|..+.++|.. ++++-+||||+++++ .+ ..+|.++++|. .|.+|++..+ .+..+|.....|++|
T Consensus 569 ~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t-~I-~~LP~~l~~Lk-~L~~Lnl~~~~~l~~~~~i~~~L~~L 644 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT-GI-SHLPSGLGNLK-KLIYLNLEVTGRLESIPGILLELQSL 644 (889)
T ss_pred hCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCC-Cc-cccchHHHHHH-hhheeccccccccccccchhhhcccc
Confidence 7999999999889999999998 899999999999999 99 99999999999 9999999998 566667777789999
Q ss_pred cEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEc-chhhHHH
Q 007656 297 KCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLG-SYHALQI 375 (594)
Q Consensus 297 ~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~-~~~~~~~ 375 (594)
++|.+.... .......++.+.+|++|....+..... .....+..++.|..+..... .......
T Consensus 645 r~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~s~--------------~~~e~l~~~~~L~~~~~~l~~~~~~~~~ 708 (889)
T KOG4658|consen 645 RVLRLPRSA--LSNDKLLLKELENLEHLENLSITISSV--------------LLLEDLLGMTRLRSLLQSLSIEGCSKRT 708 (889)
T ss_pred cEEEeeccc--cccchhhHHhhhcccchhhheeecchh--------------HhHhhhhhhHHHHHHhHhhhhcccccce
Confidence 999998763 112222244444444444443322210 12233344444432221111 0011122
Q ss_pred HhcCchhhhcceeEEE-EeCCCcccccc---ccccc-CccCCceEEecccCCceeeeecccccccccCCCccCCCcceEe
Q 007656 376 LLSSNKLKSCIRSLYL-HLTGDTASIID---ATVFA-DLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVR 450 (594)
Q Consensus 376 ~~~~~~~~~~L~~L~L-~~~~~~~~~~~---~~~l~-~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~ 450 (594)
.......+.+|+.|.+ +|..... ... ..... .++++..+.+..|.... .+.|.. ..++|+.|.
T Consensus 709 ~~~~~~~l~~L~~L~i~~~~~~e~-~~~~~~~~~~~~~f~~l~~~~~~~~~~~r--~l~~~~---------f~~~L~~l~ 776 (889)
T KOG4658|consen 709 LISSLGSLGNLEELSILDCGISEI-VIEWEESLIVLLCFPNLSKVSILNCHMLR--DLTWLL---------FAPHLTSLS 776 (889)
T ss_pred eecccccccCcceEEEEcCCCchh-hcccccccchhhhHHHHHHHHhhcccccc--ccchhh---------ccCcccEEE
Confidence 2222334458888888 7666543 101 01122 25577888888888877 455543 689999999
Q ss_pred EecCCCCcccc-ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCCCC----cc
Q 007656 451 IEQCHKLKDVT-FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKP----LP 525 (594)
Q Consensus 451 L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~----~~ 525 (594)
+..|..+.++. ....+..++.+.+..+ ...... .....+.||++..+.+.+. .+.++.... ..
T Consensus 777 l~~~~~~e~~i~~~k~~~~l~~~i~~f~-~~~~l~----------~~~~l~~l~~i~~~~l~~~-~l~~~~ve~~p~l~~ 844 (889)
T KOG4658|consen 777 LVSCRLLEDIIPKLKALLELKELILPFN-KLEGLR----------MLCSLGGLPQLYWLPLSFL-KLEELIVEECPKLGK 844 (889)
T ss_pred EecccccccCCCHHHHhhhcccEEeccc-ccccce----------eeecCCCCceeEecccCcc-chhheehhcCccccc
Confidence 99999888864 4666666776555544 322221 0025566777777777664 366666655 56
Q ss_pred CCCccEEeeccc-CCCCCCCCC
Q 007656 526 FTHLKEISVGYC-RNLKKLPLD 546 (594)
Q Consensus 526 l~~L~~L~i~~C-~~L~~lp~~ 546 (594)
+|.+..+.+.+| +++..+|..
T Consensus 845 ~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 845 LPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred CccccccceeccccceeecCCc
Confidence 889999999997 888888876
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=2.2e-15 Score=127.59 Aligned_cols=154 Identities=23% Similarity=0.323 Sum_probs=84.9
Q ss_pred CCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCcE
Q 007656 219 CPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLKC 298 (594)
Q Consensus 219 ~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~ 298 (594)
+.+++.|.| +.+.+..+|+. +..+.+|++|++++| .+ ..+|.+|..++ +|+.|+++-|++..+|.+|+.++.|+.
T Consensus 32 ~s~ITrLtL-SHNKl~~vppn-ia~l~nlevln~~nn-qi-e~lp~~issl~-klr~lnvgmnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 32 MSNITRLTL-SHNKLTVVPPN-IAELKNLEVLNLSNN-QI-EELPTSISSLP-KLRILNVGMNRLNILPRGFGSFPALEV 106 (264)
T ss_pred hhhhhhhhc-ccCceeecCCc-HHHhhhhhhhhcccc-hh-hhcChhhhhch-hhhheecchhhhhcCccccCCCchhhh
Confidence 455555666 55555566665 556666666666666 66 66666666666 666666666666666666666666666
Q ss_pred EecCCCCCCC--CcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHH
Q 007656 299 LNLRWTDTLN--KIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQIL 376 (594)
Q Consensus 299 L~L~~~~~l~--~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 376 (594)
||+++| ++. .+|.. |-.|+.|+.|++++|.+.. .+.+.++|++|+.|.+..|....++.-
T Consensus 107 ldltyn-nl~e~~lpgn-ff~m~tlralyl~dndfe~----------------lp~dvg~lt~lqil~lrdndll~lpke 168 (264)
T KOG0617|consen 107 LDLTYN-NLNENSLPGN-FFYMTTLRALYLGDNDFEI----------------LPPDVGKLTNLQILSLRDNDLLSLPKE 168 (264)
T ss_pred hhcccc-ccccccCCcc-hhHHHHHHHHHhcCCCccc----------------CChhhhhhcceeEEeeccCchhhCcHH
Confidence 666655 332 34544 4455556666666555543 444555666666665555544332222
Q ss_pred hcCchhhhcceeEEEEeCCCcc
Q 007656 377 LSSNKLKSCIRSLYLHLTGDTA 398 (594)
Q Consensus 377 ~~~~~~~~~L~~L~L~~~~~~~ 398 (594)
. ..+.+|+.|.+..+.+..
T Consensus 169 i---g~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 169 I---GDLTRLRELHIQGNRLTV 187 (264)
T ss_pred H---HHHHHHHHHhcccceeee
Confidence 2 222355555554444443
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=8.8e-15 Score=124.01 Aligned_cols=153 Identities=24% Similarity=0.306 Sum_probs=81.4
Q ss_pred CCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCcEEecCCCCCCCCcchhhhcCCCCCc
Q 007656 243 LMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLR 322 (594)
Q Consensus 243 ~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~ 322 (594)
++.+...|.+++| .+ ..+|+.|..+. +|+.|++++|.|+++|.+++.+++|++|+++-| .+..+|.+ |+.++.|+
T Consensus 31 ~~s~ITrLtLSHN-Kl-~~vppnia~l~-nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprg-fgs~p~le 105 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KL-TVVPPNIAELK-NLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRG-FGSFPALE 105 (264)
T ss_pred chhhhhhhhcccC-ce-eecCCcHHHhh-hhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccc-cCCCchhh
Confidence 4455555566666 66 55666666666 666666666666666666666666666666655 45556655 66666666
Q ss_pred EEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcCchhhhcceeEEEEeCCCcccccc
Q 007656 323 VLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLHLTGDTASIID 402 (594)
Q Consensus 323 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 402 (594)
.|++..|.... ...+..+..++.|+.|.++.|.+..++.-.. .+++|+.|.+.-+++-. .
T Consensus 106 vldltynnl~e--------------~~lpgnff~m~tlralyl~dndfe~lp~dvg---~lt~lqil~lrdndll~---l 165 (264)
T KOG0617|consen 106 VLDLTYNNLNE--------------NSLPGNFFYMTTLRALYLGDNDFEILPPDVG---KLTNLQILSLRDNDLLS---L 165 (264)
T ss_pred hhhcccccccc--------------ccCCcchhHHHHHHHHHhcCCCcccCChhhh---hhcceeEEeeccCchhh---C
Confidence 66666555542 1233334455555555555555543332222 12244444443233322 2
Q ss_pred cccccCccCCceEEeccc
Q 007656 403 ATVFADLNQLNQLWIDEG 420 (594)
Q Consensus 403 ~~~l~~~~~L~~L~l~~~ 420 (594)
+..++.+..|++|.|.+|
T Consensus 166 pkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 166 PKEIGDLTRLRELHIQGN 183 (264)
T ss_pred cHHHHHHHHHHHHhcccc
Confidence 224555556666666653
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.31 E-value=4.3e-14 Score=135.17 Aligned_cols=115 Identities=25% Similarity=0.284 Sum_probs=102.4
Q ss_pred CCCCceEEEeeCCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCc-hHHhhhhcCcEEEccCCcccc
Q 007656 207 PTNFDCVIWVPTCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPL-AMSELGSSLELLDISYASITE 285 (594)
Q Consensus 207 ~~~f~~~~w~p~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~-~i~~l~~~L~~L~ls~~~l~~ 285 (594)
.+.|. .+++||.|+| ++|.|..|.+.+|.+++.|-.|-+.++.+| +.+|. .|+.|. .|+.|.+.-|.+..
T Consensus 84 ~~aF~------~l~~LRrLdL-S~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI-~~l~k~~F~gL~-slqrLllNan~i~C 154 (498)
T KOG4237|consen 84 PGAFK------TLHRLRRLDL-SKNNISFIAPDAFKGLASLLSLVLYGNNKI-TDLPKGAFGGLS-SLQRLLLNANHINC 154 (498)
T ss_pred hhhcc------chhhhceecc-cccchhhcChHhhhhhHhhhHHHhhcCCch-hhhhhhHhhhHH-HHHHHhcChhhhcc
Confidence 45677 8999999999 889999999999999999988888773399 99975 578898 99999999999998
Q ss_pred cch-hhhccCcCcEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCC
Q 007656 286 LPE-ELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGW 331 (594)
Q Consensus 286 lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~ 331 (594)
++. .+..|++|..|.+.+| .+..++.+.+..+.+++++++..|.+
T Consensus 155 ir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 155 IRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred hhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCcc
Confidence 876 7999999999999999 88999987799999999999998874
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.28 E-value=1.7e-12 Score=130.63 Aligned_cols=166 Identities=20% Similarity=0.135 Sum_probs=81.2
Q ss_pred hcCCCcccEEEccCCcCccc----ccCchHHhhhhcCcEEEccCCcccc-------cchhhhccCcCcEEecCCCCCCC-
Q 007656 241 FQLMPSLKVLKMSNCWNFTL----KLPLAMSELGSSLELLDISYASITE-------LPEELKLLVNLKCLNLRWTDTLN- 308 (594)
Q Consensus 241 ~~~l~~L~~L~L~~~~~l~~----~lp~~i~~l~~~L~~L~ls~~~l~~-------lp~~i~~L~~L~~L~L~~~~~l~- 308 (594)
|..+.+|++|++++| .++. .++..+...+ +|++|+++++.+.. ++..+.++++|+.|++++| .+.
T Consensus 19 ~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~-~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~ 95 (319)
T cd00116 19 LPKLLCLQVLRLEGN-TLGEEAAKALASALRPQP-SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDN-ALGP 95 (319)
T ss_pred HHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCC-CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCC-CCCh
Confidence 556666777777777 5521 1333444444 57777777665442 2334556667777777776 333
Q ss_pred CcchhhhcCCCC---CcEEEecCCCCCccccCCCCccccCCcccchHHhcCC-CCCcEEEEEEcchh--hHHHHhcCchh
Q 007656 309 KIPRQLISILSW---LRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGL-KYLEVLELTLGSYH--ALQILLSSNKL 382 (594)
Q Consensus 309 ~lp~~~~~~L~~---L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~l~~~~~~--~~~~~~~~~~~ 382 (594)
..+. .+..+.+ |++|++++|.+.... .......+..+ ++|+.|+++.+.+. ....+......
T Consensus 96 ~~~~-~~~~l~~~~~L~~L~ls~~~~~~~~-----------~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 163 (319)
T cd00116 96 DGCG-VLESLLRSSSLQELKLNNNGLGDRG-----------LRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRA 163 (319)
T ss_pred hHHH-HHHHHhccCcccEEEeeCCccchHH-----------HHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHh
Confidence 2222 2443433 777777776654210 11123345555 66666666665543 12222222222
Q ss_pred hhcceeEEEEeCCCcc-ccc-ccccccCccCCceEEecccC
Q 007656 383 KSCIRSLYLHLTGDTA-SII-DATVFADLNQLNQLWIDEGI 421 (594)
Q Consensus 383 ~~~L~~L~L~~~~~~~-~~~-~~~~l~~~~~L~~L~l~~~~ 421 (594)
+.+|+.|++..+.+.. ... ....+..+++|+.|++++|.
T Consensus 164 ~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence 2355555553233321 000 01123334566666666654
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.24 E-value=7.2e-13 Score=127.91 Aligned_cols=201 Identities=15% Similarity=0.103 Sum_probs=136.9
Q ss_pred HHHhcCchhhhcceeEEE-EeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEe
Q 007656 374 QILLSSNKLKSCIRSLYL-HLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIE 452 (594)
Q Consensus 374 ~~~~~~~~~~~~L~~L~L-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~ 452 (594)
+.+.........+.++++ .|+.+++ ......-..+..|+.|+.++|....+.....+. ...++|+.|.++
T Consensus 258 e~l~~~~~~~~~i~~lnl~~c~~lTD-~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg--------~~~~~L~~l~l~ 328 (483)
T KOG4341|consen 258 EALLKAAAYCLEILKLNLQHCNQLTD-EDLWLIACGCHALQVLCYSSCTDITDEVLWALG--------QHCHNLQVLELS 328 (483)
T ss_pred HHHHHHhccChHhhccchhhhccccc-hHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh--------cCCCceEEEecc
Confidence 333333333345666666 7766665 322224456778999999999887765555554 478999999999
Q ss_pred cCCCCcccc--c-cccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccC-----CCCc
Q 007656 453 QCHKLKDVT--F-LIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIY-----WKPL 524 (594)
Q Consensus 453 ~c~~l~~l~--~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~-----~~~~ 524 (594)
+|..+++.- . -.+.+.|+.+++..|..+.+- ++.....++|.|+.|.|++|..+++.. ....
T Consensus 329 ~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~----------tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c 398 (483)
T KOG4341|consen 329 GCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG----------TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC 398 (483)
T ss_pred ccchhhhhhhhhhhcCChhhhhhcccccceehhh----------hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence 999887754 2 346789999999999766543 111245678999999999998777762 2233
Q ss_pred cCCCccEEeecccCCCCC--CCCCCcCCcCcceEEEccHhhhhh----cccCch--hhhccccccccccccccCCcc
Q 007656 525 PFTHLKEISVGYCRNLKK--LPLDSNSAKERKFVIRGEEDWWNR----LQWEDE--ATQIAFRSCFQPMGVLSGGRK 593 (594)
Q Consensus 525 ~l~~L~~L~i~~C~~L~~--lp~~~~~~~L~~l~I~~~~~~~~~----l~w~~~--~~~~~~~~~~~~~~~~~~~~~ 593 (594)
++..|+.+.+.+||.+.+ +......++|+.+++.+|...... +.-.-| .+..++.|..+|.-|-+=++|
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a~~t~p~~v~~~~~~ 475 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFAPVTPPGFVKGLHQR 475 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhccCCCCccccccchhh
Confidence 578899999999999887 333333389999999999776432 333333 455678888888655444433
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.22 E-value=5.9e-12 Score=126.78 Aligned_cols=264 Identities=21% Similarity=0.135 Sum_probs=162.8
Q ss_pred CCCCcccccccccccc-----cccCchhhcCCCcccEEEccCCcCcccc-------cCchHHhhhhcCcEEEccCCccc-
Q 007656 218 TCPHLHTLFLASNNSL-----QRITDGFFQLMPSLKVLKMSNCWNFTLK-------LPLAMSELGSSLELLDISYASIT- 284 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l-----~~l~~~~~~~l~~L~~L~L~~~~~l~~~-------lp~~i~~l~~~L~~L~ls~~~l~- 284 (594)
.+++|+.|++ .++.+ ..++.. +...+.|+.|+++++ .+ +. ++..+..+. +|+.|++++|.+.
T Consensus 21 ~l~~L~~l~l-~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~-~~-~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~ 95 (319)
T cd00116 21 KLLCLQVLRL-EGNTLGEEAAKALASA-LRPQPSLKELCLSLN-ET-GRIPRGLQSLLQGLTKGC-GLQELDLSDNALGP 95 (319)
T ss_pred HHhhccEEee-cCCCCcHHHHHHHHHH-HhhCCCceEEecccc-cc-CCcchHHHHHHHHHHhcC-ceeEEEccCCCCCh
Confidence 4566888888 44444 223333 667788999999988 66 42 345667777 9999999999876
Q ss_pred ccchhhhccCc---CcEEecCCCCCCCC-----cchhhhcCC-CCCcEEEecCCCCCccccCCCCccccCCcccchHHhc
Q 007656 285 ELPEELKLLVN---LKCLNLRWTDTLNK-----IPRQLISIL-SWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELL 355 (594)
Q Consensus 285 ~lp~~i~~L~~---L~~L~L~~~~~l~~-----lp~~~~~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 355 (594)
..+..+..+.+ |++|++++| .+.. +... +..+ ++|+.|++.+|.+.... .......+.
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~~-----------~~~~~~~~~ 162 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGAS-----------CEALAKALR 162 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCchH-----------HHHHHHHHH
Confidence 34445665655 999999998 4552 2222 4566 89999999999876311 112455677
Q ss_pred CCCCCcEEEEEEcchhh--HHHHhcCchhhhcceeEEEEeCCCcc-ccc-ccccccCccCCceEEecccCCceeeeeccc
Q 007656 356 GLKYLEVLELTLGSYHA--LQILLSSNKLKSCIRSLYLHLTGDTA-SII-DATVFADLNQLNQLWIDEGIELEELKIDYT 431 (594)
Q Consensus 356 ~L~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~-~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~ 431 (594)
.+++|+.|+++.+.... +..+.......++|+.|+++.+.... ... ....+..+++|+.|++++|.... ..+..+
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~-~~~~~l 241 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD-AGAAAL 241 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch-HHHHHH
Confidence 88899999998776542 22232222233589999994444432 010 12246678899999999975432 111111
Q ss_pred ccccccCCCccCCCcceEeEecCCCCcc-----cc-ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccc-cc
Q 007656 432 EIVRKRREPFVFRSLHCVRIEQCHKLKD-----VT-FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPF-EN 504 (594)
Q Consensus 432 ~~~~~~~~~~~~~~L~~L~L~~c~~l~~-----l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l-~~ 504 (594)
.. .. ....+.|++|++++|. +++ +. .+..+++|++|++++|..-.. ... .....+..+ +.
T Consensus 242 ~~--~~--~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~-~~~-------~~~~~~~~~~~~ 308 (319)
T cd00116 242 AS--AL--LSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGEE-GAQ-------LLAESLLEPGNE 308 (319)
T ss_pred HH--HH--hccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcHH-HHH-------HHHHHHhhcCCc
Confidence 10 00 0124789999999874 431 21 355668899999998854322 100 000133444 67
Q ss_pred cceeccccc
Q 007656 505 LQSLHLSQL 513 (594)
Q Consensus 505 L~~L~L~~~ 513 (594)
|+.|++.+.
T Consensus 309 ~~~~~~~~~ 317 (319)
T cd00116 309 LESLWVKDD 317 (319)
T ss_pred hhhcccCCC
Confidence 777777654
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.15 E-value=1.5e-12 Score=130.30 Aligned_cols=129 Identities=26% Similarity=0.385 Sum_probs=73.6
Q ss_pred chhHHHHHHHHhhccCCCCCceEEEeeCCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhh
Q 007656 191 GKTTLLTHINNKFLESPTNFDCVIWVPTCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELG 270 (594)
Q Consensus 191 gKttl~~~~~~~~~~~~~~f~~~~w~p~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~ 270 (594)
--|+.|+.-.|++..+...+. .|..|..+.| +.|.+..+|.. ++++..|.+|+|+.| .+ ..+|..++.|.
T Consensus 75 tdt~~aDlsrNR~~elp~~~~------~f~~Le~liL-y~n~~r~ip~~-i~~L~~lt~l~ls~N-ql-S~lp~~lC~lp 144 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEAC------AFVSLESLIL-YHNCIRTIPEA-ICNLEALTFLDLSSN-QL-SHLPDGLCDLP 144 (722)
T ss_pred cchhhhhccccccccCchHHH------HHHHHHHHHH-Hhccceecchh-hhhhhHHHHhhhccc-hh-hcCChhhhcCc
Confidence 345555555555544444443 4445555555 55555555555 556666666666666 55 55666666553
Q ss_pred hcCcEEEccCCcccccchhhhccCcCcEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCc
Q 007656 271 SSLELLDISYASITELPEELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFN 333 (594)
Q Consensus 271 ~~L~~L~ls~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~ 333 (594)
|+.|-+++|+++.+|..++.+..|..||.+.| .+..+|.. ++++.+|+.|.+..|....
T Consensus 145 --Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn~l~~ 203 (722)
T KOG0532|consen 145 --LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRNHLED 203 (722)
T ss_pred --ceeEEEecCccccCCcccccchhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhhhhhh
Confidence 66666666666666666665556666666666 55556654 5566666666666655543
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.04 E-value=2.9e-10 Score=101.16 Aligned_cols=129 Identities=29% Similarity=0.340 Sum_probs=54.9
Q ss_pred CCCCcccccccccccccccCchhhc-CCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhh-hccCc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQ-LMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEEL-KLLVN 295 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~-~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i-~~L~~ 295 (594)
++..++.|+| .++.+..+.. ++ .+.+|+.|++++| .+ .+++ .+..+. +|++|++++|.|+.++..+ ..+++
T Consensus 17 n~~~~~~L~L-~~n~I~~Ie~--L~~~l~~L~~L~Ls~N-~I-~~l~-~l~~L~-~L~~L~L~~N~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 17 NPVKLRELNL-RGNQISTIEN--LGATLDKLEVLDLSNN-QI-TKLE-GLPGLP-RLKTLDLSNNRISSISEGLDKNLPN 89 (175)
T ss_dssp --------------------S----TT-TT--EEE-TTS----S--T-T----T-T--EEE--SS---S-CHHHHHH-TT
T ss_pred cccccccccc-cccccccccc--hhhhhcCCCEEECCCC-CC-cccc-CccChh-hhhhcccCCCCCCccccchHHhCCc
Confidence 5667899999 7788877754 44 5789999999999 99 8885 477888 9999999999999997655 46899
Q ss_pred CcEEecCCCCCCCCcch-hhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEE
Q 007656 296 LKCLNLRWTDTLNKIPR-QLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELT 366 (594)
Q Consensus 296 L~~L~L~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 366 (594)
|++|++++| .+..+.. ..+..+++|+.|++.+|..... .......+..+|+|+.|+-.
T Consensus 90 L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~------------~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 90 LQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEK------------KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp --EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS------------TTHHHHHHHH-TT-SEETTE
T ss_pred CCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccch------------hhHHHHHHHHcChhheeCCE
Confidence 999999998 6766543 2267889999999999887641 23455667788888888754
No 28
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.01 E-value=1.6e-11 Score=118.84 Aligned_cols=294 Identities=19% Similarity=0.175 Sum_probs=161.1
Q ss_pred CcccccccccccccccC-chhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCC-cccccc--hhhhccCcC
Q 007656 221 HLHTLFLASNNSLQRIT-DGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYA-SITELP--EELKLLVNL 296 (594)
Q Consensus 221 ~L~~L~L~~~~~l~~l~-~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~-~l~~lp--~~i~~L~~L 296 (594)
.|+.|.+.++.....-+ ..+..++++++.|.+.+|.+++...-.++....++|++|++..| .++..- .-...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 45666665554443322 12245667777777777744422223334443347777777765 555322 233456777
Q ss_pred cEEecCCCCCCCC--cchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHH
Q 007656 297 KCLNLRWTDTLNK--IPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQ 374 (594)
Q Consensus 297 ~~L~L~~~~~l~~--lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 374 (594)
++|++++|+.+.. +.. ...++++++.+...+|.... .......-+....+..+++.........
T Consensus 219 ~~lNlSwc~qi~~~gv~~-~~rG~~~l~~~~~kGC~e~~-------------le~l~~~~~~~~~i~~lnl~~c~~lTD~ 284 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQA-LQRGCKELEKLSLKGCLELE-------------LEALLKAAAYCLEILKLNLQHCNQLTDE 284 (483)
T ss_pred HHhhhccCchhhcCcchH-Hhccchhhhhhhhccccccc-------------HHHHHHHhccChHhhccchhhhccccch
Confidence 7777777755543 111 13455566666666654432 1111111222222333332222111112
Q ss_pred HHhcCchhhhcceeEEE-EeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEec
Q 007656 375 ILLSSNKLKSCIRSLYL-HLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQ 453 (594)
Q Consensus 375 ~~~~~~~~~~~L~~L~L-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~ 453 (594)
.+......+..|+.|.. +|+.... .....--.+..+|+.|.+++|....+....... .+.+.|+.+++.+
T Consensus 285 ~~~~i~~~c~~lq~l~~s~~t~~~d-~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~--------rn~~~Le~l~~e~ 355 (483)
T KOG4341|consen 285 DLWLIACGCHALQVLCYSSCTDITD-EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG--------RNCPHLERLDLEE 355 (483)
T ss_pred HHHHHhhhhhHhhhhcccCCCCCch-HHHHHHhcCCCceEEEeccccchhhhhhhhhhh--------cCChhhhhhcccc
Confidence 22222334457777777 7776655 322223445678888888888776654444333 4678888888888
Q ss_pred CCCCcccc---ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCCCCc-cCCCc
Q 007656 454 CHKLKDVT---FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKPL-PFTHL 529 (594)
Q Consensus 454 c~~l~~l~---~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~-~l~~L 529 (594)
|....+-. .-.+.+.|+.|.|+.|..+++... ..+.....+...|+.+.|++||.+.+-..... .+++|
T Consensus 356 ~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi-------~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~L 428 (483)
T KOG4341|consen 356 CGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI-------RHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNL 428 (483)
T ss_pred cceehhhhHhhhccCCchhccCChhhhhhhhhhhh-------hhhhhccccccccceeeecCCCCchHHHHHHHhhCccc
Confidence 76655532 234678888888888866655411 01112345567788888888887766444333 47788
Q ss_pred cEEeecccCCCCCCC
Q 007656 530 KEISVGYCRNLKKLP 544 (594)
Q Consensus 530 ~~L~i~~C~~L~~lp 544 (594)
+++++.+|....+=+
T Consensus 429 eri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 429 ERIELIDCQDVTKEA 443 (483)
T ss_pred ceeeeechhhhhhhh
Confidence 888888887766533
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.88 E-value=4.2e-10 Score=104.34 Aligned_cols=139 Identities=22% Similarity=0.258 Sum_probs=102.2
Q ss_pred hHHhcCCCCCcEEEEEEcchhhHHHHhcCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecc
Q 007656 351 IQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDY 430 (594)
Q Consensus 351 ~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~ 430 (594)
...+...+.|+.++++.|.+..+.+-. +..+.++.|.++.+++.. + ..+..+++|..|++++|...+ ...|
T Consensus 277 ~~~~dTWq~LtelDLS~N~I~~iDESv---KL~Pkir~L~lS~N~i~~-v---~nLa~L~~L~~LDLS~N~Ls~--~~Gw 347 (490)
T KOG1259|consen 277 LVSADTWQELTELDLSGNLITQIDESV---KLAPKLRRLILSQNRIRT-V---QNLAELPQLQLLDLSGNLLAE--CVGW 347 (490)
T ss_pred EEecchHhhhhhccccccchhhhhhhh---hhccceeEEeccccceee-e---hhhhhcccceEeecccchhHh--hhhh
Confidence 334445566777777777666555444 334477888886666655 3 357888999999999965544 3455
Q ss_pred cccccccCCCccCCCcceEeEecCCCCccccccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecc
Q 007656 431 TEIVRKRREPFVFRSLHCVRIEQCHKLKDVTFLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHL 510 (594)
Q Consensus 431 ~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 510 (594)
-. .+.|+++|.|++ +.+.++..++.+-+|..|++++| .++.+.. ...++.+|+|+.+.|
T Consensus 348 h~---------KLGNIKtL~La~-N~iE~LSGL~KLYSLvnLDl~~N-~Ie~lde----------V~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 348 HL---------KLGNIKTLKLAQ-NKIETLSGLRKLYSLVNLDLSSN-QIEELDE----------VNHIGNLPCLETLRL 406 (490)
T ss_pred Hh---------hhcCEeeeehhh-hhHhhhhhhHhhhhheecccccc-chhhHHH----------hcccccccHHHHHhh
Confidence 43 789999999999 68999999999999999999999 6666522 147899999999999
Q ss_pred cccccccccC
Q 007656 511 SQLPALKSIY 520 (594)
Q Consensus 511 ~~~~~L~~l~ 520 (594)
.++| +..++
T Consensus 407 ~~NP-l~~~v 415 (490)
T KOG1259|consen 407 TGNP-LAGSV 415 (490)
T ss_pred cCCC-ccccc
Confidence 9986 44433
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.88 E-value=1.2e-09 Score=97.20 Aligned_cols=120 Identities=25% Similarity=0.289 Sum_probs=44.3
Q ss_pred cccccccCchhhcCCCcccEEEccCCcCcccccCchHH-hhhhcCcEEEccCCcccccchhhhccCcCcEEecCCCCCCC
Q 007656 230 NNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMS-ELGSSLELLDISYASITELPEELKLLVNLKCLNLRWTDTLN 308 (594)
Q Consensus 230 ~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~-~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L~L~~~~~l~ 308 (594)
.+.+..++. +.+..+++.|+|.+| .| ..+. .++ .+. +|+.|++++|.|+.++ .+..+++|++|++++| .++
T Consensus 6 ~~~i~~~~~--~~n~~~~~~L~L~~n-~I-~~Ie-~L~~~l~-~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~ 77 (175)
T PF14580_consen 6 ANMIEQIAQ--YNNPVKLRELNLRGN-QI-STIE-NLGATLD-KLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RIS 77 (175)
T ss_dssp -----------------------------------S--TT-T-T--EEE-TTS--S--T-T----TT--EEE--SS----
T ss_pred ccccccccc--ccccccccccccccc-cc-cccc-chhhhhc-CCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCC
Confidence 344556655 567778999999999 99 7764 466 577 9999999999999997 6888999999999999 899
Q ss_pred CcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchh
Q 007656 309 KIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYH 371 (594)
Q Consensus 309 ~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 371 (594)
.++.+....+++|++|++++|.+... .....+..+++|+.|++..|.+.
T Consensus 78 ~i~~~l~~~lp~L~~L~L~~N~I~~l--------------~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 78 SISEGLDKNLPNLQELYLSNNKISDL--------------NELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp S-CHHHHHH-TT--EEE-TTS---SC--------------CCCGGGGG-TT--EEE-TT-GGG
T ss_pred ccccchHHhCCcCCEEECcCCcCCCh--------------HHhHHHHcCCCcceeeccCCccc
Confidence 99765335799999999999998752 23566888999999998877654
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=7.5e-10 Score=107.95 Aligned_cols=210 Identities=20% Similarity=0.163 Sum_probs=114.4
Q ss_pred cCCCcccEEEccCCcCcccccCc--hHHhhhhcCcEEEccCCccccc---chhhhccCcCcEEecCCCCCCCCcch-hhh
Q 007656 242 QLMPSLKVLKMSNCWNFTLKLPL--AMSELGSSLELLDISYASITEL---PEELKLLVNLKCLNLRWTDTLNKIPR-QLI 315 (594)
Q Consensus 242 ~~l~~L~~L~L~~~~~l~~~lp~--~i~~l~~~L~~L~ls~~~l~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~-~~~ 315 (594)
+++++|+...|.++ .+ +..+. ....++ +++.||||+|-+... -.....|++|+.|+++.| .+..... ..-
T Consensus 118 sn~kkL~~IsLdn~-~V-~~~~~~~~~k~~~-~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~ 193 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RV-EDAGIEEYSKILP-NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTT 193 (505)
T ss_pred hhHHhhhheeecCc-cc-cccchhhhhhhCC-cceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccch
Confidence 45677777777777 66 55542 455666 777777777754433 234567778888888877 3333222 112
Q ss_pred cCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcCchhhhcceeEEEEeCC
Q 007656 316 SILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLHLTG 395 (594)
Q Consensus 316 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 395 (594)
..++.|+.|.+..|++..- ....-+..+|+|+.|.+..|....... .....+..|+.|+|+.+.
T Consensus 194 ~~l~~lK~L~l~~CGls~k--------------~V~~~~~~fPsl~~L~L~~N~~~~~~~--~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSWK--------------DVQWILLTFPSLEVLYLEANEIILIKA--TSTKILQTLQELDLSNNN 257 (505)
T ss_pred hhhhhhheEEeccCCCCHH--------------HHHHHHHhCCcHHHhhhhcccccceec--chhhhhhHHhhccccCCc
Confidence 2466777888888877631 233445566777777777664211111 111233466666664444
Q ss_pred CcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCcccc---ccccCCCCceE
Q 007656 396 DTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDVT---FLIFAPNLKSL 472 (594)
Q Consensus 396 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~---~l~~l~~L~~L 472 (594)
+-+ .+.......++.|..|.++.|....--.++.- .......+++|+.|++..+ .+.+.+ .+..+++|+.|
T Consensus 258 li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~----s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l 331 (505)
T KOG3207|consen 258 LID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVE----SLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHL 331 (505)
T ss_pred ccc-cccccccccccchhhhhccccCcchhcCCCcc----chhhhcccccceeeecccC-ccccccccchhhccchhhhh
Confidence 444 33334566667777777776533221111110 0011135677777777774 343333 34455666666
Q ss_pred eEccC
Q 007656 473 DLSYC 477 (594)
Q Consensus 473 ~L~~~ 477 (594)
.+..+
T Consensus 332 ~~~~n 336 (505)
T KOG3207|consen 332 RITLN 336 (505)
T ss_pred hcccc
Confidence 65544
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.80 E-value=3.9e-10 Score=113.27 Aligned_cols=199 Identities=20% Similarity=0.167 Sum_probs=165.6
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLK 297 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~ 297 (594)
.+.--...++ +.|.+.++|.. +..|..|+.|.+..| .+ ..+|..++++. .|.+||++.|.+..+|..++.|+ |+
T Consensus 73 ~ltdt~~aDl-srNR~~elp~~-~~~f~~Le~liLy~n-~~-r~ip~~i~~L~-~lt~l~ls~NqlS~lp~~lC~lp-Lk 146 (722)
T KOG0532|consen 73 DLTDTVFADL-SRNRFSELPEE-ACAFVSLESLILYHN-CI-RTIPEAICNLE-ALTFLDLSSNQLSHLPDGLCDLP-LK 146 (722)
T ss_pred cccchhhhhc-cccccccCchH-HHHHHHHHHHHHHhc-cc-eecchhhhhhh-HHHHhhhccchhhcCChhhhcCc-ce
Confidence 5666677888 78889999988 788899999999999 99 99999999999 99999999999999999999886 99
Q ss_pred EEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHh
Q 007656 298 CLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILL 377 (594)
Q Consensus 298 ~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 377 (594)
.|-+++| +++.+|.+ ++.+..|.+|+.+.|.+.+ .+..++.+.+|+.|.+..|....+.+-.
T Consensus 147 vli~sNN-kl~~lp~~-ig~~~tl~~ld~s~nei~s----------------lpsql~~l~slr~l~vrRn~l~~lp~El 208 (722)
T KOG0532|consen 147 VLIVSNN-KLTSLPEE-IGLLPTLAHLDVSKNEIQS----------------LPSQLGYLTSLRDLNVRRNHLEDLPEEL 208 (722)
T ss_pred eEEEecC-ccccCCcc-cccchhHHHhhhhhhhhhh----------------chHHhhhHHHHHHHHHhhhhhhhCCHHH
Confidence 9999999 89999998 8899999999999998876 7888999999999999888776655544
Q ss_pred cCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCC
Q 007656 378 SSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCH 455 (594)
Q Consensus 378 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~ 455 (594)
... .|..|+++||.+.. ++. .|..|+.|+.|.|.+|+... +|.-+... +...=.+.|++.-|.
T Consensus 209 ~~L----pLi~lDfScNkis~-iPv--~fr~m~~Lq~l~LenNPLqS--PPAqIC~k------GkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 209 CSL----PLIRLDFSCNKISY-LPV--DFRKMRHLQVLQLENNPLQS--PPAQICEK------GKVHIFKYLSTQACQ 271 (722)
T ss_pred hCC----ceeeeecccCceee-cch--hhhhhhhheeeeeccCCCCC--ChHHHHhc------cceeeeeeecchhcc
Confidence 433 78899999999998 543 89999999999999987665 55443311 123335777777773
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.78 E-value=5.8e-09 Score=108.25 Aligned_cols=87 Identities=32% Similarity=0.453 Sum_probs=49.8
Q ss_pred cCCCcccEEEccCCcCcccccCchHHhh-hhcCcEEEccCCcccccchhhhccCcCcEEecCCCCCCCCcchhhhcCCCC
Q 007656 242 QLMPSLKVLKMSNCWNFTLKLPLAMSEL-GSSLELLDISYASITELPEELKLLVNLKCLNLRWTDTLNKIPRQLISILSW 320 (594)
Q Consensus 242 ~~l~~L~~L~L~~~~~l~~~lp~~i~~l-~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~ 320 (594)
..++.+..|++.++ .+ ..+|+..+.+ . +|+.|++++|.+..+|..++.+++|+.|++++| .+..+|.. .+.+++
T Consensus 113 ~~~~~l~~L~l~~n-~i-~~i~~~~~~~~~-nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~-~~~~~~ 187 (394)
T COG4886 113 LELTNLTSLDLDNN-NI-TDIPPLIGLLKS-NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKL-LSNLSN 187 (394)
T ss_pred hcccceeEEecCCc-cc-ccCccccccchh-hcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhh-hhhhhh
Confidence 34455666666666 55 5555555444 3 566666666666666555666666666666666 55555552 335556
Q ss_pred CcEEEecCCCCCc
Q 007656 321 LRVLRMLGTGWFN 333 (594)
Q Consensus 321 L~~L~l~~~~~~~ 333 (594)
|+.|++++|.+..
T Consensus 188 L~~L~ls~N~i~~ 200 (394)
T COG4886 188 LNNLDLSGNKISD 200 (394)
T ss_pred hhheeccCCcccc
Confidence 6666666655543
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.76 E-value=1.1e-09 Score=101.67 Aligned_cols=133 Identities=26% Similarity=0.257 Sum_probs=110.1
Q ss_pred eCCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcC
Q 007656 217 PTCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNL 296 (594)
Q Consensus 217 p~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L 296 (594)
|.++.|++||| +.|.++.+..+ ..-.|.+|+|++++| .+ ..+.. +..+. +|+.||+|+|.++++...=.+|-|.
T Consensus 281 dTWq~LtelDL-S~N~I~~iDES-vKL~Pkir~L~lS~N-~i-~~v~n-La~L~-~L~~LDLS~N~Ls~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 281 DTWQELTELDL-SGNLITQIDES-VKLAPKLRRLILSQN-RI-RTVQN-LAELP-QLQLLDLSGNLLAECVGWHLKLGNI 354 (490)
T ss_pred chHhhhhhccc-cccchhhhhhh-hhhccceeEEecccc-ce-eeehh-hhhcc-cceEeecccchhHhhhhhHhhhcCE
Confidence 46788999999 78889999888 677899999999999 88 66654 78888 9999999999988887666778899
Q ss_pred cEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhh
Q 007656 297 KCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHA 372 (594)
Q Consensus 297 ~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 372 (594)
++|.|.+| .+..+.. +.+|-+|..|++.+|++... .....+++|+.|+.+.+..|....
T Consensus 355 KtL~La~N-~iE~LSG--L~KLYSLvnLDl~~N~Ie~l--------------deV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 355 KTLKLAQN-KIETLSG--LRKLYSLVNLDLSSNQIEEL--------------DEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eeeehhhh-hHhhhhh--hHhhhhheeccccccchhhH--------------HHhcccccccHHHHHhhcCCCccc
Confidence 99999999 7888776 88999999999999988642 245568889999988888776543
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.72 E-value=5.6e-09 Score=108.32 Aligned_cols=128 Identities=31% Similarity=0.450 Sum_probs=106.2
Q ss_pred CCCCcccccccccccccccCchhhcCCC-cccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcC
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMP-SLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNL 296 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~-~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L 296 (594)
..+.++.|++ .++.+.++++. ...++ +|+.|++++| .+ ..+|..++.++ +|+.|+++.|.+..+|...+.+++|
T Consensus 114 ~~~~l~~L~l-~~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i-~~l~~~~~~l~-~L~~L~l~~N~l~~l~~~~~~~~~L 188 (394)
T COG4886 114 ELTNLTSLDL-DNNNITDIPPL-IGLLKSNLKELDLSDN-KI-ESLPSPLRNLP-NLKNLDLSFNDLSDLPKLLSNLSNL 188 (394)
T ss_pred cccceeEEec-CCcccccCccc-cccchhhccccccccc-ch-hhhhhhhhccc-cccccccCCchhhhhhhhhhhhhhh
Confidence 4567999999 88999999986 55664 9999999999 99 99988899999 9999999999999999888899999
Q ss_pred cEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEc
Q 007656 297 KCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLG 368 (594)
Q Consensus 297 ~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 368 (594)
+.|++++| .+..+|.. ++.+..|++|.+.+|.... .+..+.+++++..+.+..+
T Consensus 189 ~~L~ls~N-~i~~l~~~-~~~~~~L~~l~~~~N~~~~----------------~~~~~~~~~~l~~l~l~~n 242 (394)
T COG4886 189 NNLDLSGN-KISDLPPE-IELLSALEELDLSNNSIIE----------------LLSSLSNLKNLSGLELSNN 242 (394)
T ss_pred hheeccCC-ccccCchh-hhhhhhhhhhhhcCCccee----------------cchhhhhcccccccccCCc
Confidence 99999999 89999984 5677779999999985432 4444666666665554433
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.69 E-value=1.4e-08 Score=74.22 Aligned_cols=59 Identities=36% Similarity=0.479 Sum_probs=44.9
Q ss_pred hcCcEEEccCCcccccch-hhhccCcCcEEecCCCCCCCCcchhhhcCCCCCcEEEecCCC
Q 007656 271 SSLELLDISYASITELPE-ELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTG 330 (594)
Q Consensus 271 ~~L~~L~ls~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~ 330 (594)
|+|++|++++|.++.+|. .+..+++|++|++++| .+..+|.+.|.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 367777888777777775 6777788888888877 6777777667788888888887775
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=5.7e-09 Score=101.93 Aligned_cols=218 Identities=16% Similarity=0.155 Sum_probs=146.8
Q ss_pred ccchhhhccCcCcEEecCCCCCCCCcch-hhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEE
Q 007656 285 ELPEELKLLVNLKCLNLRWTDTLNKIPR-QLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVL 363 (594)
Q Consensus 285 ~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 363 (594)
.+-..=.++.+|+...|+++ .+...+. +....+++++.|++++|-+..+. ...+-+..|++|+.|
T Consensus 112 ki~akQsn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~-------------~v~~i~eqLp~Le~L 177 (505)
T KOG3207|consen 112 KIAAKQSNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWF-------------PVLKIAEQLPSLENL 177 (505)
T ss_pred HHHHHhhhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHH-------------HHHHHHHhcccchhc
Confidence 33334467889999999998 6666663 45788999999999999876532 355667789999999
Q ss_pred EEEEcchhhHHHHhcCchhhhcceeEEE-EeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCcc
Q 007656 364 ELTLGSYHALQILLSSNKLKSCIRSLYL-HLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFV 442 (594)
Q Consensus 364 ~l~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~ 442 (594)
+++.|.......-. .....++|+.|.| +|+-. . -.....+..+|+|+.|++.+|.... ..... ...
T Consensus 178 Nls~Nrl~~~~~s~-~~~~l~~lK~L~l~~CGls-~-k~V~~~~~~fPsl~~L~L~~N~~~~---~~~~~-------~~i 244 (505)
T KOG3207|consen 178 NLSSNRLSNFISSN-TTLLLSHLKQLVLNSCGLS-W-KDVQWILLTFPSLEVLYLEANEIIL---IKATS-------TKI 244 (505)
T ss_pred ccccccccCCcccc-chhhhhhhheEEeccCCCC-H-HHHHHHHHhCCcHHHhhhhcccccc---eecch-------hhh
Confidence 99987653211110 0114569999999 66433 3 2122356778999999999985332 11111 135
Q ss_pred CCCcceEeEecCCCCccc--cccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccC
Q 007656 443 FRSLHCVRIEQCHKLKDV--TFLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIY 520 (594)
Q Consensus 443 ~~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~ 520 (594)
+..|+.|+|++++.+..- +-.+.+|.|+.|+++.| .+.++-.-+. +.......||+|++|.+..+ ++.+|+
T Consensus 245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~-----~s~~kt~~f~kL~~L~i~~N-~I~~w~ 317 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDV-----ESLDKTHTFPKLEYLNISEN-NIRDWR 317 (505)
T ss_pred hhHHhhccccCCcccccccccccccccchhhhhcccc-CcchhcCCCc-----cchhhhcccccceeeecccC-cccccc
Confidence 788999999996555432 45889999999999998 6666522000 00013467999999999997 565555
Q ss_pred CC--CccCCCccEEeecc
Q 007656 521 WK--PLPFTHLKEISVGY 536 (594)
Q Consensus 521 ~~--~~~l~~L~~L~i~~ 536 (594)
.- ...+++|+.|.+..
T Consensus 318 sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 318 SLNHLRTLENLKHLRITL 335 (505)
T ss_pred ccchhhccchhhhhhccc
Confidence 42 23567888887653
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.6e-09 Score=100.60 Aligned_cols=58 Identities=31% Similarity=0.214 Sum_probs=34.4
Q ss_pred cCcEEEccCCccc--ccchhhhccCcCcEEecCCCCCCCC-cchhhhcCCCCCcEEEecCCCC
Q 007656 272 SLELLDISYASIT--ELPEELKLLVNLKCLNLRWTDTLNK-IPRQLISILSWLRVLRMLGTGW 331 (594)
Q Consensus 272 ~L~~L~ls~~~l~--~lp~~i~~L~~L~~L~L~~~~~l~~-lp~~~~~~L~~L~~L~l~~~~~ 331 (594)
.||+||||...|+ .+...+..+.+|+.|.+.++ .+.. +... +.+-.+|+.|+++.|.-
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~-iAkN~~L~~lnlsm~sG 246 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNT-IAKNSNLVRLNLSMCSG 246 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHH-Hhccccceeeccccccc
Confidence 5777777777665 44445666777777777766 3322 2222 55556666666666543
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.59 E-value=7.9e-09 Score=107.44 Aligned_cols=243 Identities=22% Similarity=0.211 Sum_probs=151.6
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLK 297 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~ 297 (594)
.+..+..+.+ ..+.+..+-.. +..+++|..|++.+| .| ..+...+..+. +|++|++++|.|+.+. .+..++.|+
T Consensus 70 ~l~~l~~l~l-~~n~i~~~~~~-l~~~~~l~~l~l~~n-~i-~~i~~~l~~~~-~L~~L~ls~N~I~~i~-~l~~l~~L~ 143 (414)
T KOG0531|consen 70 SLTSLKELNL-RQNLIAKILNH-LSKLKSLEALDLYDN-KI-EKIENLLSSLV-NLQVLDLSFNKITKLE-GLSTLTLLK 143 (414)
T ss_pred HhHhHHhhcc-chhhhhhhhcc-cccccceeeeecccc-ch-hhcccchhhhh-cchheecccccccccc-chhhccchh
Confidence 3455555556 55556553332 677888899999988 88 77766577788 9999999999888886 677778889
Q ss_pred EEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHH--hcCCCCCcEEEEEEcchhhHHH
Q 007656 298 CLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQE--LLGLKYLEVLELTLGSYHALQI 375 (594)
Q Consensus 298 ~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~L~~L~~L~l~~~~~~~~~~ 375 (594)
.|++.+| .+..++. +..+++|+.+++.+|.+.. ++. +..+.+++.+.+..+....+..
T Consensus 144 ~L~l~~N-~i~~~~~--~~~l~~L~~l~l~~n~i~~-----------------ie~~~~~~~~~l~~l~l~~n~i~~i~~ 203 (414)
T KOG0531|consen 144 ELNLSGN-LISDISG--LESLKSLKLLDLSYNRIVD-----------------IENDELSELISLEELDLGGNSIREIEG 203 (414)
T ss_pred hheeccC-cchhccC--CccchhhhcccCCcchhhh-----------------hhhhhhhhccchHHHhccCCchhcccc
Confidence 9999998 7888776 7778888999988888764 222 4667777777777776654443
Q ss_pred HhcCchhhhcceeEEEEeCCCcccccccccccCcc--CCceEEecccCCceeeeecccccccccCCCccCCCcceEeEec
Q 007656 376 LLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLN--QLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQ 453 (594)
Q Consensus 376 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~ 453 (594)
+.... .+..+.+.-+.+.. + ..+..+. +|+.+++.++.... .+... ..+.++..|++.+
T Consensus 204 ~~~~~----~l~~~~l~~n~i~~-~---~~l~~~~~~~L~~l~l~~n~i~~--~~~~~---------~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 204 LDLLK----KLVLLSLLDNKISK-L---EGLNELVMLHLRELYLSGNRISR--SPEGL---------ENLKNLPVLDLSS 264 (414)
T ss_pred hHHHH----HHHHhhccccccee-c---cCcccchhHHHHHHhcccCcccc--ccccc---------cccccccccchhh
Confidence 32211 22222332222221 1 1222222 37888888865554 21222 2577788888887
Q ss_pred CCCCccccccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccc
Q 007656 454 CHKLKDVTFLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLP 514 (594)
Q Consensus 454 c~~l~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 514 (594)
+.+..+..+...+.+..+...++......-. . ........+.++.+.+...+
T Consensus 265 -n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~ 316 (414)
T KOG0531|consen 265 -NRISNLEGLERLPKLSELWLNDNKLALSEAI-S-------QEYITSAAPTLVTLTLELNP 316 (414)
T ss_pred -ccccccccccccchHHHhccCcchhcchhhh-h-------ccccccccccccccccccCc
Confidence 5666666666677777777766643211100 0 00124456666666666654
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=3.7e-09 Score=98.17 Aligned_cols=84 Identities=24% Similarity=0.168 Sum_probs=38.5
Q ss_pred cccEEEccCCcCcc-cccCchHHhhhhcCcEEEccCCccc-ccchhhhccCcCcEEecCCCCCCCCcchh-hhcCCCCCc
Q 007656 246 SLKVLKMSNCWNFT-LKLPLAMSELGSSLELLDISYASIT-ELPEELKLLVNLKCLNLRWTDTLNKIPRQ-LISILSWLR 322 (594)
Q Consensus 246 ~L~~L~L~~~~~l~-~~lp~~i~~l~~~L~~L~ls~~~l~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-~~~~L~~L~ 322 (594)
.|++|||+.. .|+ ..+-.-+..+. +|+.|.+.++++. .+-..+.+-.+|+.|+++.|..+++.... ++.+++.|+
T Consensus 186 Rlq~lDLS~s-~it~stl~~iLs~C~-kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHGILSQCS-KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchh-heeHHHHHHHHHHHH-hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 3555555555 442 11222234444 5555555555444 22234455555555555555444433221 134455555
Q ss_pred EEEecCCCC
Q 007656 323 VLRMLGTGW 331 (594)
Q Consensus 323 ~L~l~~~~~ 331 (594)
.|+++.|..
T Consensus 264 ~LNlsWc~l 272 (419)
T KOG2120|consen 264 ELNLSWCFL 272 (419)
T ss_pred hcCchHhhc
Confidence 555555444
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.54 E-value=2.6e-08 Score=94.84 Aligned_cols=82 Identities=23% Similarity=0.205 Sum_probs=41.6
Q ss_pred CCCcccccccccccccc----cCchhhcCCCcccEEEccCCcCccc----ccCchHH-------hhhhcCcEEEccCCcc
Q 007656 219 CPHLHTLFLASNNSLQR----ITDGFFQLMPSLKVLKMSNCWNFTL----KLPLAMS-------ELGSSLELLDISYASI 283 (594)
Q Consensus 219 ~~~L~~L~L~~~~~l~~----l~~~~~~~l~~L~~L~L~~~~~l~~----~lp~~i~-------~l~~~L~~L~ls~~~l 283 (594)
..+++.++| ++|.++. .-...+.+.+.|+..++++- -. + .+|+.+. ..+ +|++||||+|.+
T Consensus 29 ~~s~~~l~l-sgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ft-GR~~~Ei~e~L~~l~~aL~~~~-~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 29 MDSLTKLDL-SGNTFGTEAARAIAKVLASKKELREVNLSDM-FT-GRLKDEIPEALKMLSKALLGCP-KLQKLDLSDNAF 104 (382)
T ss_pred cCceEEEec-cCCchhHHHHHHHHHHHhhcccceeeehHhh-hc-CCcHHHHHHHHHHHHHHHhcCC-ceeEeecccccc
Confidence 456667777 3333321 11222566667777777654 22 2 2333322 222 666666666633
Q ss_pred c--c---cchhhhccCcCcEEecCCC
Q 007656 284 T--E---LPEELKLLVNLKCLNLRWT 304 (594)
Q Consensus 284 ~--~---lp~~i~~L~~L~~L~L~~~ 304 (594)
. . +-.-+.++.+|++|.|.+|
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcC
Confidence 2 2 2223555666666666666
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.53 E-value=5.3e-08 Score=71.07 Aligned_cols=56 Identities=34% Similarity=0.522 Sum_probs=29.6
Q ss_pred cccEEEccCCcCcccccC-chHHhhhhcCcEEEccCCcccccch-hhhccCcCcEEecCCC
Q 007656 246 SLKVLKMSNCWNFTLKLP-LAMSELGSSLELLDISYASITELPE-ELKLLVNLKCLNLRWT 304 (594)
Q Consensus 246 ~L~~L~L~~~~~l~~~lp-~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L~~L~L~~~ 304 (594)
+|++|++++| .+ ..+| ..+..+. +|++|++++|.++.+|. .|..+++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l-~~i~~~~f~~l~-~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KL-TEIPPDSFSNLP-NLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TE-SEECTTTTTTGT-TESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CC-CccCHHHHcCCC-CCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4555555555 55 4443 2344454 55555555555555543 4555555555555555
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.46 E-value=3.9e-07 Score=99.29 Aligned_cols=105 Identities=25% Similarity=0.385 Sum_probs=74.9
Q ss_pred ccccccccccccc-ccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCccc-ccchhhhccCcCcEE
Q 007656 222 LHTLFLASNNSLQ-RITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASIT-ELPEELKLLVNLKCL 299 (594)
Q Consensus 222 L~~L~L~~~~~l~-~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~-~lp~~i~~L~~L~~L 299 (594)
++.|+| .++.+. .+|.. ++.+++|+.|+|++| .+.+.+|..++.+. +|++|++++|.+. .+|..+++|++|++|
T Consensus 420 v~~L~L-~~n~L~g~ip~~-i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~-~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGL-DNQGLRGFIPND-ISKLRHLQSINLSGN-SIRGNIPPSLGSIT-SLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEC-CCCCccccCCHH-HhCCCCCCEEECCCC-cccCcCChHHhCCC-CCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 667777 444444 45554 778888888888888 77557787888888 8888888888776 677778888888888
Q ss_pred ecCCCCCCCCcchhhhcC-CCCCcEEEecCCCC
Q 007656 300 NLRWTDTLNKIPRQLISI-LSWLRVLRMLGTGW 331 (594)
Q Consensus 300 ~L~~~~~l~~lp~~~~~~-L~~L~~L~l~~~~~ 331 (594)
+|++|.....+|.. +.. ..++..+++.+|..
T Consensus 496 ~Ls~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 496 NLNGNSLSGRVPAA-LGGRLLHRASFNFTDNAG 527 (623)
T ss_pred ECcCCcccccCChH-HhhccccCceEEecCCcc
Confidence 88888544577775 444 34666777776653
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.38 E-value=9.5e-07 Score=96.30 Aligned_cols=85 Identities=25% Similarity=0.384 Sum_probs=75.1
Q ss_pred cccEEEccCCcCcccccCchHHhhhhcCcEEEccCCccc-ccchhhhccCcCcEEecCCCCCCCCcchhhhcCCCCCcEE
Q 007656 246 SLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASIT-ELPEELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLRVL 324 (594)
Q Consensus 246 ~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~~L 324 (594)
.++.|+|++| .+.+.+|..++.+. +|++|+|++|.+. .+|..++.+++|+.|+|++|.....+|.. +++|++|+.|
T Consensus 419 ~v~~L~L~~n-~L~g~ip~~i~~L~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQ-GLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCC-CccccCCHHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEE
Confidence 4788999999 88678899999999 9999999999887 88989999999999999999544477876 9999999999
Q ss_pred EecCCCCCc
Q 007656 325 RMLGTGWFN 333 (594)
Q Consensus 325 ~l~~~~~~~ 333 (594)
++++|.+..
T Consensus 496 ~Ls~N~l~g 504 (623)
T PLN03150 496 NLNGNSLSG 504 (623)
T ss_pred ECcCCcccc
Confidence 999998764
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.37 E-value=1.3e-07 Score=90.08 Aligned_cols=225 Identities=17% Similarity=0.115 Sum_probs=119.9
Q ss_pred hcCCCcccEEEccCCcCcccc-----cCchHHhhhhcCcEEEccCC----cccccchh-------hhccCcCcEEecCCC
Q 007656 241 FQLMPSLKVLKMSNCWNFTLK-----LPLAMSELGSSLELLDISYA----SITELPEE-------LKLLVNLKCLNLRWT 304 (594)
Q Consensus 241 ~~~l~~L~~L~L~~~~~l~~~-----lp~~i~~l~~~L~~L~ls~~----~l~~lp~~-------i~~L~~L~~L~L~~~ 304 (594)
...+..+.++++++| .+ +. +...+...+ .|+.-++|+- ...++|.. +..+++|++|||++|
T Consensus 26 ~~~~~s~~~l~lsgn-t~-G~EAa~~i~~~L~~~~-~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGN-TF-GTEAARAIAKVLASKK-ELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred hcccCceEEEeccCC-ch-hHHHHHHHHHHHhhcc-cceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 567789999999999 87 42 345566677 8999888874 22355543 456789999999999
Q ss_pred CCCCC-cch---hhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHH--HHhc
Q 007656 305 DTLNK-IPR---QLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQ--ILLS 378 (594)
Q Consensus 305 ~~l~~-lp~---~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~--~~~~ 378 (594)
.+.. -+. ..+..++.|++|++.+|++........++... .-...+..++-+.|+++.+..|...... .+..
T Consensus 103 -A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~--~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~ 179 (382)
T KOG1909|consen 103 -AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALF--ELAVNKKAASKPKLRVFICGRNRLENGGATALAE 179 (382)
T ss_pred -ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHH--HHHHHhccCCCcceEEEEeeccccccccHHHHHH
Confidence 4442 221 34678999999999999886521100000000 0002223445567777777766543211 1111
Q ss_pred CchhhhcceeEEEEeCCCccc-c-cccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCC
Q 007656 379 SNKLKSCIRSLYLHLTGDTAS-I-IDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHK 456 (594)
Q Consensus 379 ~~~~~~~L~~L~L~~~~~~~~-~-~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~ 456 (594)
..+..+.|+.+.+..++.... + .....+..+++|+.|+|..|.....- ...+. ..++.+++|+.|.+++|..
T Consensus 180 ~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg-s~~La-----kaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 180 AFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG-SVALA-----KALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH-HHHHH-----HHhcccchheeeccccccc
Confidence 122223556665533333220 1 01124556666666666665432210 00000 1123455666666666632
Q ss_pred Ccc----cc--ccccCCCCceEeEccC
Q 007656 457 LKD----VT--FLIFAPNLKSLDLSYC 477 (594)
Q Consensus 457 l~~----l~--~l~~l~~L~~L~L~~~ 477 (594)
-.. +- .-...|+|+.|.+.+|
T Consensus 254 ~~~Ga~a~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 254 ENEGAIAFVDALKESAPSLEVLELAGN 280 (382)
T ss_pred ccccHHHHHHHHhccCCCCceeccCcc
Confidence 111 00 1223566666666666
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=1.8e-07 Score=87.06 Aligned_cols=103 Identities=21% Similarity=0.186 Sum_probs=55.5
Q ss_pred cEEEccCCcCccccc--CchHHhhhhcCcEEEccCCcccccc---hhhhccCcCcEEecCCCCCCCCcchhhh-cCCCCC
Q 007656 248 KVLKMSNCWNFTLKL--PLAMSELGSSLELLDISYASITELP---EELKLLVNLKCLNLRWTDTLNKIPRQLI-SILSWL 321 (594)
Q Consensus 248 ~~L~L~~~~~l~~~l--p~~i~~l~~~L~~L~ls~~~l~~lp---~~i~~L~~L~~L~L~~~~~l~~lp~~~~-~~L~~L 321 (594)
..|.+.++ .| ... ...|+...++++.|||.+|.|.... ..+.+|+.|++|+++.| .+..--.. + ..+.+|
T Consensus 48 ellvln~~-~i-d~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~-lp~p~~nl 123 (418)
T KOG2982|consen 48 ELLVLNGS-II-DNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKS-LPLPLKNL 123 (418)
T ss_pred hhheecCC-CC-CcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCcccc-Ccccccce
Confidence 34444455 44 222 2234444447777777777666443 34567777777777777 33321111 1 244577
Q ss_pred cEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEc
Q 007656 322 RVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLG 368 (594)
Q Consensus 322 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 368 (594)
+.|-+.+.....- ..-..+..++.++.|+++.|
T Consensus 124 ~~lVLNgT~L~w~--------------~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 124 RVLVLNGTGLSWT--------------QSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEEEcCCCCChh--------------hhhhhhhcchhhhhhhhccc
Confidence 7777766555421 13334566666666666644
No 47
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.32 E-value=7.9e-07 Score=87.93 Aligned_cols=53 Identities=34% Similarity=0.701 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHhc--CCceEEEEEecCCCchhHHHHHHHHhhccCCCCCceEEEe
Q 007656 163 LQSQLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWV 216 (594)
Q Consensus 163 ~~~~~~~i~~~L~~--~~~~~i~i~G~gG~gKttl~~~~~~~~~~~~~~f~~~~w~ 216 (594)
||.++++|.++|.+ ++.++|+|+||||+||||+|..++.+. .....|+.++|+
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv 55 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWV 55 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEE
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccc
Confidence 67899999999998 799999999999999999999999885 358999999999
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.29 E-value=7.9e-08 Score=99.99 Aligned_cols=241 Identities=22% Similarity=0.206 Sum_probs=157.6
Q ss_pred cCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCcEEecCCCCCCCCcchhhhcCCCCC
Q 007656 242 QLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLKCLNLRWTDTLNKIPRQLISILSWL 321 (594)
Q Consensus 242 ~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L 321 (594)
..+..++.+.+..| .+ ...-..++.+. +|+.|++.+|.|+.+...+..+++|++|++++| .++.+.. +..++.|
T Consensus 69 ~~l~~l~~l~l~~n-~i-~~~~~~l~~~~-~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~--l~~l~~L 142 (414)
T KOG0531|consen 69 ESLTSLKELNLRQN-LI-AKILNHLSKLK-SLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG--LSTLTLL 142 (414)
T ss_pred HHhHhHHhhccchh-hh-hhhhccccccc-ceeeeeccccchhhcccchhhhhcchheecccc-ccccccc--hhhccch
Confidence 45667777778888 88 66555578888 999999999999999866899999999999999 8999987 8899999
Q ss_pred cEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcCchhhhcceeEEEEeCCCccccc
Q 007656 322 RVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLHLTGDTASII 401 (594)
Q Consensus 322 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 401 (594)
+.|++.+|.+.. +..+..++.|+.++++++.+..++... ...+..++.+.++-+.... +
T Consensus 143 ~~L~l~~N~i~~-----------------~~~~~~l~~L~~l~l~~n~i~~ie~~~--~~~~~~l~~l~l~~n~i~~-i- 201 (414)
T KOG0531|consen 143 KELNLSGNLISD-----------------ISGLESLKSLKLLDLSYNRIVDIENDE--LSELISLEELDLGGNSIRE-I- 201 (414)
T ss_pred hhheeccCcchh-----------------ccCCccchhhhcccCCcchhhhhhhhh--hhhccchHHHhccCCchhc-c-
Confidence 999999998874 333556888899999988887766521 1223366666664333332 1
Q ss_pred ccccccCccCCceEEecccCCceeeeecccccccccCCCccCCC--cceEeEecCCCCccc-cccccCCCCceEeEccCc
Q 007656 402 DATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRS--LHCVRIEQCHKLKDV-TFLIFAPNLKSLDLSYCS 478 (594)
Q Consensus 402 ~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~--L~~L~L~~c~~l~~l-~~l~~l~~L~~L~L~~~~ 478 (594)
..+..+..+..+.+..+.... ..... .+.. |+.+++++ +.+... ..+..++.+..|++.++
T Consensus 202 --~~~~~~~~l~~~~l~~n~i~~---~~~l~---------~~~~~~L~~l~l~~-n~i~~~~~~~~~~~~l~~l~~~~n- 265 (414)
T KOG0531|consen 202 --EGLDLLKKLVLLSLLDNKISK---LEGLN---------ELVMLHLRELYLSG-NRISRSPEGLENLKNLPVLDLSSN- 265 (414)
T ss_pred --cchHHHHHHHHhhccccccee---ccCcc---------cchhHHHHHHhccc-Cccccccccccccccccccchhhc-
Confidence 133333444444555543322 11111 2333 88899988 466666 46778888888888877
Q ss_pred cchhhhccCccCCCCcccCCCccccccceecccccccccc--cCCC--CccCCCccEEeecccC
Q 007656 479 SMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKS--IYWK--PLPFTHLKEISVGYCR 538 (594)
Q Consensus 479 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~--l~~~--~~~l~~L~~L~i~~C~ 538 (594)
.+..+ .....++.+..+.....+.... .... ....+.++.+.+...|
T Consensus 266 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (414)
T KOG0531|consen 266 RISNL-------------EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNP 316 (414)
T ss_pred ccccc-------------ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCc
Confidence 33332 1344555555555555432211 1111 2235566666665544
No 49
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.25 E-value=4.8e-06 Score=83.46 Aligned_cols=62 Identities=21% Similarity=0.377 Sum_probs=35.0
Q ss_pred CCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCC-cccccchhhhccCcCcEEecCCCCCCCCcch
Q 007656 243 LMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYA-SITELPEELKLLVNLKCLNLRWTDTLNKIPR 312 (594)
Q Consensus 243 ~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~-~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~ 312 (594)
.+.+++.|++++| .+ ..+|. ++++|+.|.+++| .++.+|..+. .+|++|++++|..+..+|.
T Consensus 50 ~~~~l~~L~Is~c-~L-~sLP~----LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 50 EARASGRLYIKDC-DI-ESLPV----LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HhcCCCEEEeCCC-CC-cccCC----CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc
Confidence 3456666666666 66 66652 3335666666654 5555554442 4566666666654555554
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.24 E-value=1.5e-06 Score=58.11 Aligned_cols=40 Identities=45% Similarity=0.583 Sum_probs=28.8
Q ss_pred cCcEEEccCCcccccchhhhccCcCcEEecCCCCCCCCcch
Q 007656 272 SLELLDISYASITELPEELKLLVNLKCLNLRWTDTLNKIPR 312 (594)
Q Consensus 272 ~L~~L~ls~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~ 312 (594)
+|++|++++|+|+.+|..+++|++|++|++++| .++.++.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 677888888878777777778888888888877 5666654
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=5.7e-07 Score=83.87 Aligned_cols=104 Identities=10% Similarity=-0.049 Sum_probs=55.0
Q ss_pred EEEEEEcchhhHHHHhcCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCc
Q 007656 362 VLELTLGSYHALQILLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPF 441 (594)
Q Consensus 362 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~ 441 (594)
+++...+....+.......+.++++..+.+.-+.+.. ........+++.+-.|.++.++.-.....+.. .
T Consensus 177 tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~-~s~ek~se~~p~~~~LnL~~~~idswasvD~L---------n 246 (418)
T KOG2982|consen 177 TLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKT-ESSEKGSEPFPSLSCLNLGANNIDSWASVDAL---------N 246 (418)
T ss_pred hhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccc-hhhcccCCCCCcchhhhhcccccccHHHHHHH---------c
Confidence 3333333333333333334445566666662222222 22333555666666777776554333233333 3
Q ss_pred cCCCcceEeEecCCCCcccc-------ccccCCCCceEeEc
Q 007656 442 VFRSLHCVRIEQCHKLKDVT-------FLIFAPNLKSLDLS 475 (594)
Q Consensus 442 ~~~~L~~L~L~~c~~l~~l~-------~l~~l~~L~~L~L~ 475 (594)
.++.|..|.+++.+....+. .++.+++++.|+=+
T Consensus 247 ~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 247 GFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 67888888888776655543 25677777777543
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.07 E-value=1.6e-06 Score=94.36 Aligned_cols=110 Identities=23% Similarity=0.243 Sum_probs=59.2
Q ss_pred CCCcccccccccccc-cccCchhhcCCCcccEEEccCCcCcc-cccCchHHhhhhcCcEEEccCCcccccchhhhccCcC
Q 007656 219 CPHLHTLFLASNNSL-QRITDGFFQLMPSLKVLKMSNCWNFT-LKLPLAMSELGSSLELLDISYASITELPEELKLLVNL 296 (594)
Q Consensus 219 ~~~L~~L~L~~~~~l-~~l~~~~~~~l~~L~~L~L~~~~~l~-~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L 296 (594)
-.+|+.|++++...+ ..++...-.-+|.|+.|.+++- .+. ..+..-...++ +|..||+|+++++.+ .++++|++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFp-NL~sLDIS~TnI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFP-NLRSLDISGTNISNL-SGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccC-ccceeecCCCCccCc-HHHhccccH
Confidence 356777777544333 2334443445677777777664 331 11112222344 777777777777666 466777777
Q ss_pred cEEecCCCCCCCCcch-hhhcCCCCCcEEEecCCCCC
Q 007656 297 KCLNLRWTDTLNKIPR-QLISILSWLRVLRMLGTGWF 332 (594)
Q Consensus 297 ~~L~L~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~~ 332 (594)
+.|.+++- .+..-+. ..+-+|++|++||++.....
T Consensus 198 q~L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 198 QVLSMRNL-EFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred HHHhccCC-CCCchhhHHHHhcccCCCeeeccccccc
Confidence 77766654 2332221 11456777777777665443
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.06 E-value=8.3e-08 Score=99.45 Aligned_cols=127 Identities=28% Similarity=0.327 Sum_probs=77.2
Q ss_pred CCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccch-hhhccCcCc
Q 007656 219 CPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPE-ELKLLVNLK 297 (594)
Q Consensus 219 ~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L~ 297 (594)
+..|.+.++ ++|.+..+..+ +.-++.|+.|+|++| ++ .+.- .+..++ +|++|||++|.+..+|. +...+. |+
T Consensus 163 Wn~L~~a~f-syN~L~~mD~S-Lqll~ale~LnLshN-k~-~~v~-~Lr~l~-~LkhLDlsyN~L~~vp~l~~~gc~-L~ 235 (1096)
T KOG1859|consen 163 WNKLATASF-SYNRLVLMDES-LQLLPALESLNLSHN-KF-TKVD-NLRRLP-KLKHLDLSYNCLRHVPQLSMVGCK-LQ 235 (1096)
T ss_pred hhhHhhhhc-chhhHHhHHHH-HHHHHHhhhhccchh-hh-hhhH-HHHhcc-cccccccccchhccccccchhhhh-he
Confidence 345555566 66666655555 566677777777777 66 5554 566666 77777777777776664 333333 77
Q ss_pred EEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcc
Q 007656 298 CLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGS 369 (594)
Q Consensus 298 ~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 369 (594)
.|.+++| .++.+-. +.+|.+|+.|+++.|-+..+ .-..-+..|..|+.|.+.+|.
T Consensus 236 ~L~lrnN-~l~tL~g--ie~LksL~~LDlsyNll~~h--------------seL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 236 LLNLRNN-ALTTLRG--IENLKSLYGLDLSYNLLSEH--------------SELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eeeeccc-HHHhhhh--HHhhhhhhccchhHhhhhcc--------------hhhhHHHHHHHHHHHhhcCCc
Confidence 7777777 5666655 66777777777776655431 123335555556666655544
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=5.6e-06 Score=55.27 Aligned_cols=40 Identities=33% Similarity=0.518 Sum_probs=31.8
Q ss_pred CcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccc
Q 007656 245 PSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELP 287 (594)
Q Consensus 245 ~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp 287 (594)
++|++|++++| .+ ..+|+.+++++ +|++|++++|.++.+|
T Consensus 1 ~~L~~L~l~~N-~i-~~l~~~l~~l~-~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QI-TDLPPELSNLP-NLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S--SSHGGHGTTCT-TSSEEEETSSCCSBEG
T ss_pred CcceEEEccCC-CC-cccCchHhCCC-CCCEEEecCCCCCCCc
Confidence 47888888888 88 78888888888 8888888888888776
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.99 E-value=3.7e-05 Score=77.22 Aligned_cols=59 Identities=22% Similarity=0.199 Sum_probs=47.2
Q ss_pred HHhhhhcCcEEEccCCcccccchhhhccCcCcEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCC
Q 007656 266 MSELGSSLELLDISYASITELPEELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGW 331 (594)
Q Consensus 266 i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~ 331 (594)
+..+. +++.|++++|.++.+|. + -.+|++|.+++|..++.+|.. + .++|+.|.+.+|..
T Consensus 48 ~~~~~-~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~ 106 (426)
T PRK15386 48 IEEAR-ASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPE 106 (426)
T ss_pred HHHhc-CCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCccc
Confidence 44566 99999999999999982 2 246999999999888888874 4 35899999998843
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.89 E-value=5.1e-06 Score=68.75 Aligned_cols=90 Identities=18% Similarity=0.327 Sum_probs=59.4
Q ss_pred CCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCcE
Q 007656 219 CPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLKC 298 (594)
Q Consensus 219 ~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~ 298 (594)
...|...+| ++|.++.+|..+-..++.+..|++++| .+ ..+|.++..++ .|+.|+++.|.+...|.-+..|.+|-.
T Consensus 52 ~~el~~i~l-s~N~fk~fp~kft~kf~t~t~lNl~~n-ei-sdvPeE~Aam~-aLr~lNl~~N~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 52 GYELTKISL-SDNGFKKFPKKFTIKFPTATTLNLANN-EI-SDVPEELAAMP-ALRSLNLRFNPLNAEPRVIAPLIKLDM 127 (177)
T ss_pred CceEEEEec-ccchhhhCCHHHhhccchhhhhhcchh-hh-hhchHHHhhhH-HhhhcccccCccccchHHHHHHHhHHH
Confidence 344555566 666666777665566666777777777 66 66777766666 777777777777777766666667777
Q ss_pred EecCCCCCCCCcchh
Q 007656 299 LNLRWTDTLNKIPRQ 313 (594)
Q Consensus 299 L~L~~~~~l~~lp~~ 313 (594)
|+..+| ....+|-.
T Consensus 128 Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 128 LDSPEN-ARAEIDVD 141 (177)
T ss_pred hcCCCC-ccccCcHH
Confidence 766666 55556543
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.87 E-value=2.5e-06 Score=70.52 Aligned_cols=107 Identities=30% Similarity=0.384 Sum_probs=83.4
Q ss_pred cccccccccccccccCchh--hcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCcEE
Q 007656 222 LHTLFLASNNSLQRITDGF--FQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLKCL 299 (594)
Q Consensus 222 L~~L~L~~~~~l~~l~~~~--~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L 299 (594)
+..++| ++..+..+++.. +....+|...+|++| .+ .++|..+....|.+++|++++|.|..+|.++..++.|+.|
T Consensus 29 ~h~ldL-ssc~lm~i~davy~l~~~~el~~i~ls~N-~f-k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDL-SSCQLMYIADAVYMLSKGYELTKISLSDN-GF-KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL 105 (177)
T ss_pred hhhccc-ccchhhHHHHHHHHHhCCceEEEEecccc-hh-hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence 344566 333344444332 556678888899999 99 9999888776668999999999999999999999999999
Q ss_pred ecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCc
Q 007656 300 NLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFN 333 (594)
Q Consensus 300 ~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~ 333 (594)
+++.| .+...|. ++..|.+|-.|+..+|....
T Consensus 106 Nl~~N-~l~~~p~-vi~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 106 NLRFN-PLNAEPR-VIAPLIKLDMLDSPENARAE 137 (177)
T ss_pred ccccC-ccccchH-HHHHHHhHHHhcCCCCcccc
Confidence 99999 6777887 47778888888888877654
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.83 E-value=6.9e-07 Score=92.87 Aligned_cols=161 Identities=22% Similarity=0.264 Sum_probs=112.8
Q ss_pred CceechhHHHHHHHHHHhcCCc----eEEE-----EEecCCCchhHHHHHHHHhhccCCCCCceEEEeeCCCCccccccc
Q 007656 158 PTIVGLQSQLEQVWRCLVEESV----GIIG-----LYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVPTCPHLHTLFLA 228 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~----~~i~-----i~G~gG~gKttl~~~~~~~~~~~~~~f~~~~w~p~~~~L~~L~L~ 228 (594)
...+|..+-+.++...+..+.. .+++ |..----.|...|...||...-.....+ -++.|+.|+|
T Consensus 122 ~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLq------ll~ale~LnL- 194 (1096)
T KOG1859|consen 122 STAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQ------LLPALESLNL- 194 (1096)
T ss_pred hhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHH------HHHHhhhhcc-
Confidence 3357777777666666654311 1111 1111122456666777777743344443 4688999999
Q ss_pred ccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCcEEecCCCCCCC
Q 007656 229 SNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLKCLNLRWTDTLN 308 (594)
Q Consensus 229 ~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L~L~~~~~l~ 308 (594)
+.|.+.... ++..+++|+.|||++| .+ ..+|.--..-. +|+.|.+++|.+++|- ++.+|.+|+.||+++| .+.
T Consensus 195 shNk~~~v~--~Lr~l~~LkhLDlsyN-~L-~~vp~l~~~gc-~L~~L~lrnN~l~tL~-gie~LksL~~LDlsyN-ll~ 267 (1096)
T KOG1859|consen 195 SHNKFTKVD--NLRRLPKLKHLDLSYN-CL-RHVPQLSMVGC-KLQLLNLRNNALTTLR-GIENLKSLYGLDLSYN-LLS 267 (1096)
T ss_pred chhhhhhhH--HHHhcccccccccccc-hh-ccccccchhhh-hheeeeecccHHHhhh-hHHhhhhhhccchhHh-hhh
Confidence 777777766 4899999999999999 99 88876333334 7999999999999886 7999999999999998 554
Q ss_pred Ccch-hhhcCCCCCcEEEecCCCCC
Q 007656 309 KIPR-QLISILSWLRVLRMLGTGWF 332 (594)
Q Consensus 309 ~lp~-~~~~~L~~L~~L~l~~~~~~ 332 (594)
.... ..++.|..|+.|.+.+|.+.
T Consensus 268 ~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 268 EHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cchhhhHHHHHHHHHHHhhcCCccc
Confidence 4332 22677888999999988764
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.80 E-value=1.4e-05 Score=87.05 Aligned_cols=157 Identities=22% Similarity=0.208 Sum_probs=90.4
Q ss_pred CcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCccc--ccchhhhccCcCcEEecCCCCCCCCcchhhhcCCCCCc
Q 007656 245 PSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASIT--ELPEELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLR 322 (594)
Q Consensus 245 ~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~ 322 (594)
.+|++|++++...++..-|..++.+.|.|+.|.+++-.+. ++-.-..+++||..||++++ .++.+.. +++|++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~G--IS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNLSG--ISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCcHH--HhccccHH
Confidence 5677777777633322225556665567777777775332 33334566777777888777 6777733 77777777
Q ss_pred EEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchh----hHHHHhcCchhhhcceeEEEEeCCCcc
Q 007656 323 VLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYH----ALQILLSSNKLKSCIRSLYLHLTGDTA 398 (594)
Q Consensus 323 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~----~~~~~~~~~~~~~~L~~L~L~~~~~~~ 398 (594)
.|.+.+-.+.. ...+.++.+|++|+.|+++..... .+.........+++|+.|+.+.+....
T Consensus 199 ~L~mrnLe~e~--------------~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 199 VLSMRNLEFES--------------YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHhccCCCCCc--------------hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 77777655442 235566777777777777754321 233333444445566666654444433
Q ss_pred cccccccccCccCCceEEecc
Q 007656 399 SIIDATVFADLNQLNQLWIDE 419 (594)
Q Consensus 399 ~~~~~~~l~~~~~L~~L~l~~ 419 (594)
......+...++|+.+.+-+
T Consensus 265 -~~le~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 265 -EILEELLNSHPNLQQIAALD 284 (699)
T ss_pred -HHHHHHHHhCccHhhhhhhh
Confidence 11112344455565555443
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.61 E-value=1.6e-05 Score=84.90 Aligned_cols=38 Identities=24% Similarity=0.359 Sum_probs=16.3
Q ss_pred cceecccccccccccCCCCcc--CCCccEEeecccCCCCC
Q 007656 505 LQSLHLSQLPALKSIYWKPLP--FTHLKEISVGYCRNLKK 542 (594)
Q Consensus 505 L~~L~L~~~~~L~~l~~~~~~--l~~L~~L~i~~C~~L~~ 542 (594)
|+.|.+..|...+.-...... +.++..+.+.+|+.+..
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccccc
Confidence 555555555433332221111 34445555555554443
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.58 E-value=9.8e-05 Score=65.55 Aligned_cols=108 Identities=20% Similarity=0.254 Sum_probs=72.3
Q ss_pred CcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhh-ccCcCcEEecCCCCCCCCcch-hhhcCCCCCc
Q 007656 245 PSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELK-LLVNLKCLNLRWTDTLNKIPR-QLISILSWLR 322 (594)
Q Consensus 245 ~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~-~L~~L~~L~L~~~~~l~~lp~-~~~~~L~~L~ 322 (594)
.+...+||++| .+ ..++. +..+. .|.+|.+++|+|+.+-..+. .+++|+.|.+.+| ++.++.+ .-+..+++|+
T Consensus 42 d~~d~iDLtdN-dl-~~l~~-lp~l~-rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 42 DQFDAIDLTDN-DL-RKLDN-LPHLP-RLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLE 116 (233)
T ss_pred cccceeccccc-ch-hhccc-CCCcc-ccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccc
Confidence 45567788888 77 66543 55666 88888888888887766554 3566888888887 5665543 1155677888
Q ss_pred EEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcc
Q 007656 323 VLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGS 369 (594)
Q Consensus 323 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 369 (594)
+|.+-+|..... .....-.+..+++|+.|++....
T Consensus 117 ~Ltll~Npv~~k------------~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 117 YLTLLGNPVEHK------------KNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeeecCCchhcc------------cCceeEEEEecCcceEeehhhhh
Confidence 888888776541 12233347788888888887544
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.40 E-value=1e-05 Score=86.49 Aligned_cols=242 Identities=16% Similarity=0.100 Sum_probs=103.7
Q ss_pred cCcCcEEecCCCCCCCCcc-hhhhcCCCCCcEEEecCC-CCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcch
Q 007656 293 LVNLKCLNLRWTDTLNKIP-RQLISILSWLRVLRMLGT-GWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY 370 (594)
Q Consensus 293 L~~L~~L~L~~~~~l~~lp-~~~~~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 370 (594)
+++|+.|.+.++..+.... ......+++|+.|++++| ...... ..........+++|+.|+++....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-----------~~~~~~~~~~~~~L~~l~l~~~~~ 255 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLS-----------PLLLLLLLSICRKLKSLDLSGCGL 255 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccc-----------hhHhhhhhhhcCCcCccchhhhhc
Confidence 5666666666664444411 112455666666666653 111100 001112333445555555553331
Q ss_pred hhHHHHhcCchhhhcceeEEE-EeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceE
Q 007656 371 HALQILLSSNKLKSCIRSLYL-HLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCV 449 (594)
Q Consensus 371 ~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L 449 (594)
.....+......+++|+.|.+ .|..++. .........+++|++|++++|..+.+....... ..+++|+.|
T Consensus 256 isd~~l~~l~~~c~~L~~L~l~~c~~lt~-~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~--------~~c~~l~~l 326 (482)
T KOG1947|consen 256 VTDIGLSALASRCPNLETLSLSNCSNLTD-EGLVSIAERCPSLRELDLSGCHGLTDSGLEALL--------KNCPNLREL 326 (482)
T ss_pred cCchhHHHHHhhCCCcceEccCCCCccch-hHHHHHHHhcCcccEEeeecCccchHHHHHHHH--------HhCcchhhh
Confidence 111111111111335666665 4544333 222334555667777777777665422111111 235555555
Q ss_pred eEecCCC---Ccccc--ccccCC--CCceEeEccCccchhhhccCccCCCCcccCCCccccccc-eecccccccc-cccC
Q 007656 450 RIEQCHK---LKDVT--FLIFAP--NLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQ-SLHLSQLPAL-KSIY 520 (594)
Q Consensus 450 ~L~~c~~---l~~l~--~l~~l~--~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~L~~~~~L-~~l~ 520 (594)
.+..+.. ++.+. .+.... .+..+.+.+|+.+++.-- ...+ ..... .+.+.+|+.+ ..+.
T Consensus 327 ~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l-----------~~~~-~~~~~~~~~l~gc~~l~~~l~ 394 (482)
T KOG1947|consen 327 KLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSL-----------SYCG-ISDLGLELSLRGCPNLTESLE 394 (482)
T ss_pred hhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhh-----------hhhh-ccCcchHHHhcCCcccchHHH
Confidence 4444332 22221 111111 344444444444433311 0001 11111 3555566655 3332
Q ss_pred CCCccCCCccEEeecccCCCCCCCCCCc---CCcCcceEEEccHhhhhh
Q 007656 521 WKPLPFTHLKEISVGYCRNLKKLPLDSN---SAKERKFVIRGEEDWWNR 566 (594)
Q Consensus 521 ~~~~~l~~L~~L~i~~C~~L~~lp~~~~---~~~L~~l~I~~~~~~~~~ 566 (594)
.......+++.|.+..|...+.--.... ...+..+.+.+|......
T Consensus 395 ~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 395 LRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred HHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 2223344478888888876555322211 244566666666555433
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=3.6e-05 Score=71.43 Aligned_cols=100 Identities=24% Similarity=0.236 Sum_probs=56.4
Q ss_pred CCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccch--hhhccCcC
Q 007656 219 CPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPE--ELKLLVNL 296 (594)
Q Consensus 219 ~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~--~i~~L~~L 296 (594)
+.+.+.|++ .+..+..|.- ..+|+.|++|.|+-| +| .++-+ +..++ +|+.|+|..|.|..+-+ .+.++++|
T Consensus 18 l~~vkKLNc-wg~~L~DIsi--c~kMp~lEVLsLSvN-kI-ssL~p-l~rCt-rLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNC-WGCGLDDISI--CEKMPLLEVLSLSVN-KI-SSLAP-LQRCT-RLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcc-cCCCccHHHH--HHhcccceeEEeecc-cc-ccchh-HHHHH-HHHHHHHHhcccccHHHHHHHhcCchh
Confidence 345555665 5555555543 456677777777766 66 55532 55666 66666666666665543 45566666
Q ss_pred cEEecCCCCCCCCcch----hhhcCCCCCcEEE
Q 007656 297 KCLNLRWTDTLNKIPR----QLISILSWLRVLR 325 (594)
Q Consensus 297 ~~L~L~~~~~l~~lp~----~~~~~L~~L~~L~ 325 (594)
+.|-|..|+....-+. .++..|++|+.|+
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 6666666554433332 2334455555554
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.16 E-value=0.00033 Score=65.01 Aligned_cols=107 Identities=26% Similarity=0.322 Sum_probs=68.8
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCc--ccccCchHHhhhhcCcEEEccCCcccccch--hhhcc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNF--TLKLPLAMSELGSSLELLDISYASITELPE--ELKLL 293 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l--~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~--~i~~L 293 (594)
.+..|+.|++ .|..++.+.. |..+++|+.|.+++| .. +..++.....++ +|++|++++|+|..+.. .+..+
T Consensus 41 ~~~~le~ls~-~n~gltt~~~--~P~Lp~LkkL~lsdn-~~~~~~~l~vl~e~~P-~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 41 EFVELELLSV-INVGLTTLTN--FPKLPKLKKLELSDN-YRRVSGGLEVLAEKAP-NLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred cccchhhhhh-hccceeeccc--CCCcchhhhhcccCC-cccccccceehhhhCC-ceeEEeecCCccccccccchhhhh
Confidence 4556666666 5555555444 667788888888887 32 134454455555 88888888887764321 46677
Q ss_pred CcCcEEecCCCCCCCCcch---hhhcCCCCCcEEEecCCC
Q 007656 294 VNLKCLNLRWTDTLNKIPR---QLISILSWLRVLRMLGTG 330 (594)
Q Consensus 294 ~~L~~L~L~~~~~l~~lp~---~~~~~L~~L~~L~l~~~~ 330 (594)
.+|..|++.+| ..+.+.. .++.-+++|+.|+-....
T Consensus 116 ~nL~~Ldl~n~-~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 116 ENLKSLDLFNC-SVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred cchhhhhcccC-CccccccHHHHHHHHhhhhccccccccC
Confidence 78888888888 4444432 445667777777766543
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.07 E-value=0.00041 Score=61.67 Aligned_cols=103 Identities=20% Similarity=0.299 Sum_probs=76.5
Q ss_pred cccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccch--hhhccCcCcEE
Q 007656 222 LHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPE--ELKLLVNLKCL 299 (594)
Q Consensus 222 L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~--~i~~L~~L~~L 299 (594)
...+|| .++.+..++. |..++.|..|.+.+| .| ..+.+.+..+.|+|+.|.+.+|.|.++.. .+..|++|++|
T Consensus 44 ~d~iDL-tdNdl~~l~~--lp~l~rL~tLll~nN-rI-t~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 44 FDAIDL-TDNDLRKLDN--LPHLPRLHTLLLNNN-RI-TRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cceecc-cccchhhccc--CCCccccceEEecCC-cc-eeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 345677 6666766665 788888899999988 88 88866677666579999999988887754 56778888999
Q ss_pred ecCCCCCCCCcch---hhhcCCCCCcEEEecCCC
Q 007656 300 NLRWTDTLNKIPR---QLISILSWLRVLRMLGTG 330 (594)
Q Consensus 300 ~L~~~~~l~~lp~---~~~~~L~~L~~L~l~~~~ 330 (594)
.+-+| .+..-+. -++..+++|+.|+..+-.
T Consensus 119 tll~N-pv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 119 TLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eecCC-chhcccCceeEEEEecCcceEeehhhhh
Confidence 88888 3444332 346788889998887643
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=6.4e-05 Score=69.85 Aligned_cols=106 Identities=23% Similarity=0.266 Sum_probs=80.0
Q ss_pred CCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCcEEecCCCCCCCCcch-hhhcCCCCC
Q 007656 243 LMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLKCLNLRWTDTLNKIPR-QLISILSWL 321 (594)
Q Consensus 243 ~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~~~~~L~~L 321 (594)
.+.+.+.|+..+| .+ ..+.. +.++. .|+.|.||-|+|+.|. .+..|++|++|+|+.| .+..+.. .-+.++++|
T Consensus 17 dl~~vkKLNcwg~-~L-~DIsi-c~kMp-~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 17 DLENVKKLNCWGC-GL-DDISI-CEKMP-LLEVLSLSVNKISSLA-PLQRCTRLKELYLRKN-CIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHHhhhhcccCC-Cc-cHHHH-HHhcc-cceeEEeeccccccch-hHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchh
Confidence 3567788899999 88 65532 34666 9999999999999996 6889999999999999 6777764 225689999
Q ss_pred cEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEE
Q 007656 322 RVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLE 364 (594)
Q Consensus 322 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 364 (594)
+.|.+..|.-.+- ++.......+.-|++|+.|+
T Consensus 91 r~LWL~ENPCc~~----------ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGE----------AGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccc----------cchhHHHHHHHHcccchhcc
Confidence 9999998876541 11234455677777777776
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.91 E-value=0.0012 Score=61.42 Aligned_cols=169 Identities=15% Similarity=0.071 Sum_probs=89.6
Q ss_pred CCCcccEEEccCCcCccc----ccCchHHhhhhcCcEEEccCCcc----cccc-------hhhhccCcCcEEecCCCCCC
Q 007656 243 LMPSLKVLKMSNCWNFTL----KLPLAMSELGSSLELLDISYASI----TELP-------EELKLLVNLKCLNLRWTDTL 307 (594)
Q Consensus 243 ~l~~L~~L~L~~~~~l~~----~lp~~i~~l~~~L~~L~ls~~~l----~~lp-------~~i~~L~~L~~L~L~~~~~l 307 (594)
-+..+..++||+| .|.+ .+...|.+-. +|+..+++.--. .++| ..+-+|++|+..+|++|-.-
T Consensus 28 ~~d~~~evdLSGN-tigtEA~e~l~~~ia~~~-~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 28 MMDELVEVDLSGN-TIGTEAMEELCNVIANVR-NLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred hhcceeEEeccCC-cccHHHHHHHHHHHhhhc-ceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 3566777777777 6621 2333444445 677666665311 1333 24567889999999988544
Q ss_pred CCcch---hhhcCCCCCcEEEecCCCCCccccCCCCccccCCcc------cchHHhcCCCCCcEEEEEEcchhhHHH--H
Q 007656 308 NKIPR---QLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGE------VLIQELLGLKYLEVLELTLGSYHALQI--L 376 (594)
Q Consensus 308 ~~lp~---~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~L~~L~~L~l~~~~~~~~~~--~ 376 (594)
...|. +.++.-+.|.+|.+.+|+...+... .-+ .......+-|.|+++.+..|+....+. .
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~--------rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~ 177 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGG--------RIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELS 177 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchh--------HHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHH
Confidence 44553 3467788899999998887642111 011 112223455677777777665532221 1
Q ss_pred hcCchhhhcceeEEEEeCCCccc-ccc--cccccCccCCceEEecccC
Q 007656 377 LSSNKLKSCIRSLYLHLTGDTAS-IID--ATVFADLNQLNQLWIDEGI 421 (594)
Q Consensus 377 ~~~~~~~~~L~~L~L~~~~~~~~-~~~--~~~l~~~~~L~~L~l~~~~ 421 (594)
.........|+.+.+..++.... +.. ...+..+.+|+.|+|..|.
T Consensus 178 a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt 225 (388)
T COG5238 178 AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT 225 (388)
T ss_pred HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence 11111123566666644433320 101 0123445666666666653
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.77 E-value=0.00065 Score=63.07 Aligned_cols=86 Identities=22% Similarity=0.267 Sum_probs=54.6
Q ss_pred hcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCC--ccc-ccchhhhccCcCcEEecCCCCCCC---Ccchhh
Q 007656 241 FQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYA--SIT-ELPEELKLLVNLKCLNLRWTDTLN---KIPRQL 314 (594)
Q Consensus 241 ~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~--~l~-~lp~~i~~L~~L~~L~L~~~~~l~---~lp~~~ 314 (594)
...+..|+.|++.++ .+ +++- .+..|+ +|++|.+|.| .+. .++....++++|++|++++| .+. .++.
T Consensus 39 ~d~~~~le~ls~~n~-gl-tt~~-~~P~Lp-~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p-- 111 (260)
T KOG2739|consen 39 TDEFVELELLSVINV-GL-TTLT-NFPKLP-KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP-- 111 (260)
T ss_pred cccccchhhhhhhcc-ce-eecc-cCCCcc-hhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccch--
Confidence 344566666666666 55 3331 133466 8888888888 443 55555666688888888888 444 3333
Q ss_pred hcCCCCCcEEEecCCCCCc
Q 007656 315 ISILSWLRVLRMLGTGWFN 333 (594)
Q Consensus 315 ~~~L~~L~~L~l~~~~~~~ 333 (594)
+..+.+|..|+++.|....
T Consensus 112 l~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhhcchhhhhcccCCccc
Confidence 5566777777887776543
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.56 E-value=0.0018 Score=60.24 Aligned_cols=190 Identities=18% Similarity=0.104 Sum_probs=117.5
Q ss_pred CCCCccccccccccccccc---CchhhcCCCcccEEEccCCcCcccc----cC-------chHHhhhhcCcEEEccCCcc
Q 007656 218 TCPHLHTLFLASNNSLQRI---TDGFFQLMPSLKVLKMSNCWNFTLK----LP-------LAMSELGSSLELLDISYASI 283 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l---~~~~~~~l~~L~~L~L~~~~~l~~~----lp-------~~i~~l~~~L~~L~ls~~~l 283 (594)
.+..+..++|++|..-++- -...+.+-.+|++.++++. .. +. +| +.+-+++ +|+..+||.|.+
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ft-gr~kde~~~~L~~Ll~aLlkcp-~l~~v~LSDNAf 104 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FT-GRDKDELYSNLVMLLKALLKCP-RLQKVDLSDNAF 104 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hh-cccHHHHHHHHHHHHHHHhcCC-cceeeecccccc
Confidence 3567788899555432221 1222667788999988875 33 32 23 3345566 999999999955
Q ss_pred c-ccch----hhhccCcCcEEecCCCCCCCCcchhhhc-------------CCCCCcEEEecCCCCCccccCCCCccccC
Q 007656 284 T-ELPE----ELKLLVNLKCLNLRWTDTLNKIPRQLIS-------------ILSWLRVLRMLGTGWFNFLEAPEDSVLFG 345 (594)
Q Consensus 284 ~-~lp~----~i~~L~~L~~L~L~~~~~l~~lp~~~~~-------------~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 345 (594)
. ..|. -+.+-+.|.+|.+.+| .+..+..+-++ +-+.|+......|.+....
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs---------- 173 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGS---------- 173 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCc----------
Confidence 4 3333 4677789999999999 66665543333 4578999999888876411
Q ss_pred CcccchHHhcCCCCCcEEEEEEcchh--hHHHHh-cCchhhhcceeEEEEeCCCcc--cccccccccCccCCceEEeccc
Q 007656 346 GGEVLIQELLGLKYLEVLELTLGSYH--ALQILL-SSNKLKSCIRSLYLHLTGDTA--SIIDATVFADLNQLNQLWIDEG 420 (594)
Q Consensus 346 ~~~~~~~~l~~L~~L~~L~l~~~~~~--~~~~~~-~~~~~~~~L~~L~L~~~~~~~--~~~~~~~l~~~~~L~~L~l~~~ 420 (594)
.......+.+-.+|+.+.+..|.+. ++..+. .....+++|+.|+|.-+.++. +......++..+.|+.|.+..|
T Consensus 174 -~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 174 -KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred -HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 1122334455568899999988762 223222 223456689999984443332 0111225666777888888877
Q ss_pred CC
Q 007656 421 IE 422 (594)
Q Consensus 421 ~~ 422 (594)
-.
T Consensus 253 ll 254 (388)
T COG5238 253 LL 254 (388)
T ss_pred hh
Confidence 43
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.21 E-value=0.0018 Score=35.87 Aligned_cols=18 Identities=39% Similarity=0.671 Sum_probs=8.4
Q ss_pred CcEEEccCCcccccchhh
Q 007656 273 LELLDISYASITELPEEL 290 (594)
Q Consensus 273 L~~L~ls~~~l~~lp~~i 290 (594)
|++|++++|.++.+|.+|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444444444444444433
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.19 E-value=0.011 Score=50.22 Aligned_cols=101 Identities=20% Similarity=0.329 Sum_probs=58.4
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccC-chHHhhhhcCcEEEccCCcccccch-hhhccCc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLP-LAMSELGSSLELLDISYASITELPE-ELKLLVN 295 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp-~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~ 295 (594)
+|++|+.+.+ .. .+..++...|..+++|+.+.+.++ + ..++ ..+..+. .|+.+.+.. .+..++. .+..+++
T Consensus 10 ~~~~l~~i~~-~~-~~~~I~~~~F~~~~~l~~i~~~~~--~-~~i~~~~F~~~~-~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 10 NCSNLESITF-PN-TIKKIGENAFSNCTSLKSINFPNN--L-TSIGDNAFSNCK-SLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp T-TT--EEEE-TS-T--EE-TTTTTT-TT-SEEEESST--T-SCE-TTTTTT-T-T-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred CCCCCCEEEE-CC-CeeEeChhhccccccccccccccc--c-cccceeeeeccc-ccccccccc-ccccccccccccccc
Confidence 7788888887 33 577788888888888888888764 4 4553 3455666 788888865 5666655 5666888
Q ss_pred CcEEecCCCCCCCCcchhhhcCCCCCcEEEecC
Q 007656 296 LKCLNLRWTDTLNKIPRQLISILSWLRVLRMLG 328 (594)
Q Consensus 296 L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~ 328 (594)
|+.+++..+ +..++...+.+. +|+.+.+..
T Consensus 83 l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 888888654 567777667776 888887764
No 72
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.73 E-value=0.01 Score=54.06 Aligned_cols=44 Identities=30% Similarity=0.424 Sum_probs=32.0
Q ss_pred eechhHHHHHHHHHH---hcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 160 IVGLQSQLEQVWRCL---VEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 160 ~vG~~~~~~~i~~~L---~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+|||+++.+++...+ .....+.+-|.|..|+|||++++.+....
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 699999999999999 23467899999999999999999888887
No 73
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.70 E-value=0.011 Score=56.18 Aligned_cols=44 Identities=34% Similarity=0.461 Sum_probs=37.5
Q ss_pred eechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 160 IVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 160 ~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
++||+.+.+++.+++..+....+.|+|..|+|||++++.+.+..
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 58999999999999998888899999999999999999988876
No 74
>PTZ00202 tuzin; Provisional
Probab=95.68 E-value=0.14 Score=52.13 Aligned_cols=48 Identities=21% Similarity=0.213 Sum_probs=40.6
Q ss_pred CCCceechhHHHHHHHHHHhcC---CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 156 IEPTIVGLQSQLEQVWRCLVEE---SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 156 ~~~~~vG~~~~~~~i~~~L~~~---~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
....++||+.+...+...|.+. ..+++.|.|..|.||||+++.+....
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l 310 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE 310 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC
Confidence 3577899999999999988652 44688999999999999999988765
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.0019 Score=57.68 Aligned_cols=65 Identities=18% Similarity=0.285 Sum_probs=34.3
Q ss_pred ccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCcc--ccccccCCCCceEeEccCc
Q 007656 406 FADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKD--VTFLIFAPNLKSLDLSYCS 478 (594)
Q Consensus 406 l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~~~ 478 (594)
+.+++.++.|.+.+|....+...+.+. ...++|+.|+|++|+.+++ +.++..+++|+.|.|.+-+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~--------~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLG--------GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhc--------ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 444555555555555555443333333 2455566666666665555 2355555566655555443
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.50 E-value=0.023 Score=48.20 Aligned_cols=100 Identities=26% Similarity=0.356 Sum_probs=58.9
Q ss_pred CCCCceEEEeeCCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCc-hHHhhhhcCcEEEccCCcccc
Q 007656 207 PTNFDCVIWVPTCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPL-AMSELGSSLELLDISYASITE 285 (594)
Q Consensus 207 ~~~f~~~~w~p~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~-~i~~l~~~L~~L~ls~~~l~~ 285 (594)
...|. .+++|+.+.+ .. .+..++..+|.+++.|+.+.+.++ + ..++. .+..+. +|+.+++..+ +..
T Consensus 28 ~~~F~------~~~~l~~i~~-~~-~~~~i~~~~F~~~~~l~~i~~~~~--~-~~i~~~~F~~~~-~l~~i~~~~~-~~~ 94 (129)
T PF13306_consen 28 ENAFS------NCTSLKSINF-PN-NLTSIGDNAFSNCKSLESITFPNN--L-KSIGDNAFSNCT-NLKNIDIPSN-ITE 94 (129)
T ss_dssp TTTTT------T-TT-SEEEE-SS-TTSCE-TTTTTT-TT-EEEEETST--T--EE-TTTTTT-T-TECEEEETTT--BE
T ss_pred hhhcc------cccccccccc-cc-cccccceeeeeccccccccccccc--c-cccccccccccc-cccccccCcc-ccE
Confidence 45576 7889999999 44 388999998999999999999754 4 45544 455577 9999999775 777
Q ss_pred cch-hhhccCcCcEEecCCCCCCCCcchhhhcCCCCCc
Q 007656 286 LPE-ELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLR 322 (594)
Q Consensus 286 lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~ 322 (594)
++. .+.++ +|+.+.+..+ +..++...+.++++|+
T Consensus 95 i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 95 IGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKLK 129 (129)
T ss_dssp EHTTTTTT--T--EEE-TTB---SS----GGG------
T ss_pred EchhhhcCC-CceEEEECCC--ccEECCccccccccCC
Confidence 776 67776 9999998764 6788887788887774
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.39 E-value=0.0094 Score=30.57 Aligned_cols=16 Identities=44% Similarity=0.686 Sum_probs=6.8
Q ss_pred cCcEEEccCCcccccc
Q 007656 272 SLELLDISYASITELP 287 (594)
Q Consensus 272 ~L~~L~ls~~~l~~lp 287 (594)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5555555555555554
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.22 E-value=0.0016 Score=59.24 Aligned_cols=95 Identities=20% Similarity=0.155 Sum_probs=64.8
Q ss_pred ccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCcEEecCCCCCCCCcch
Q 007656 233 LQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLKCLNLRWTDTLNKIPR 312 (594)
Q Consensus 233 l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~ 312 (594)
+.++|.--+..++...+||++.| .+ ..+-..+..++ .|..|+++.|.+.-+|.+++.+..+.++++..| .....|.
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~-r~-vn~~~n~s~~t-~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~ 105 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSN-RL-VNLGKNFSILT-RLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPK 105 (326)
T ss_pred hcccchhhhhccceeeeehhhhh-HH-HhhccchHHHH-HHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCc
Confidence 34455444566677777777777 66 56666666677 777777777777777777777777777777666 5677776
Q ss_pred hhhcCCCCCcEEEecCCCCC
Q 007656 313 QLISILSWLRVLRMLGTGWF 332 (594)
Q Consensus 313 ~~~~~L~~L~~L~l~~~~~~ 332 (594)
+ ++.++.++.++..++.+.
T Consensus 106 s-~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 106 S-QKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred c-ccccCCcchhhhccCcch
Confidence 5 677777777777666543
No 79
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.79 E-value=0.012 Score=32.56 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=15.2
Q ss_pred cccEEEccCCcCcccccCchHHh
Q 007656 246 SLKVLKMSNCWNFTLKLPLAMSE 268 (594)
Q Consensus 246 ~L~~L~L~~~~~l~~~lp~~i~~ 268 (594)
+|++|++++| .+ +.+|++|++
T Consensus 1 ~L~~Ldls~n-~l-~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NL-TSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EE-SEEGTTTTT
T ss_pred CccEEECCCC-cC-EeCChhhcC
Confidence 4778888888 88 677776554
No 80
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.54 E-value=0.063 Score=46.36 Aligned_cols=43 Identities=35% Similarity=0.448 Sum_probs=38.1
Q ss_pred echhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 161 VGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 161 vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+|++..+..+...+....-..+-|+|..|.||||+++.+++..
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4778888999999888777788899999999999999999987
No 81
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=94.49 E-value=0.58 Score=51.18 Aligned_cols=46 Identities=28% Similarity=0.288 Sum_probs=40.4
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
++++|.+..+..+.+.+.......+.|+|..|.||||+|+.+++..
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999988888877777789999999999999999998866
No 82
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=94.45 E-value=0.039 Score=55.42 Aligned_cols=36 Identities=22% Similarity=0.127 Sum_probs=30.6
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhhccCCCCCceEEEe
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWV 216 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~~~~~~~f~~~~w~ 216 (594)
=....|+|.+|+|||||++.+|+... ..+|+..+|+
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~--~nhFDv~~~V 204 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSIT--TNHPEVHLIV 204 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHH--hhcCCeEEEE
Confidence 35578999999999999999999983 2389999887
No 83
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=94.28 E-value=0.056 Score=51.56 Aligned_cols=37 Identities=24% Similarity=0.143 Sum_probs=31.4
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhhccCCCCCceEEEe
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWV 216 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~~~~~~~f~~~~w~ 216 (594)
.-..++|.|.+|+||||+++.+++.. . ..+|+..+|+
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l-~-~~~fdv~~~v 51 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAI-T-KNHPEVYLIV 51 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-c-cccCCeEEEE
Confidence 45678999999999999999999988 3 2389988887
No 84
>PRK08118 topology modulation protein; Reviewed
Probab=94.28 E-value=0.039 Score=49.30 Aligned_cols=38 Identities=34% Similarity=0.595 Sum_probs=29.4
Q ss_pred eEEEEEecCCCchhHHHHHHHHhhccCCCCCceEEEee
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVP 217 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~~~~~~~f~~~~w~p 217 (594)
..|.|+|.+|.||||+|+.+++...-..-+||...|-|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~ 39 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP 39 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc
Confidence 35789999999999999999999832235677666543
No 85
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.14 E-value=0.083 Score=54.11 Aligned_cols=46 Identities=24% Similarity=0.356 Sum_probs=40.1
Q ss_pred CceechhHHHHHHHHHHhc----CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~----~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+.++||+.+++++...+.. .....+-|+|..|.|||++++.+++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999865 345678899999999999999999876
No 86
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.86 E-value=0.12 Score=47.83 Aligned_cols=46 Identities=26% Similarity=0.361 Sum_probs=33.3
Q ss_pred CceechhHHHHHHHHHHh-----cCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLV-----EESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~-----~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++||.+.-++.+.-.+. ++.+..+=+||..|+||||||..+.+..
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc
Confidence 557999887777554443 3567888899999999999999999988
No 87
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=93.77 E-value=0.18 Score=48.20 Aligned_cols=74 Identities=14% Similarity=0.100 Sum_probs=59.4
Q ss_pred chhhhhhHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHHHHHh
Q 007656 10 DGALFNRCLDCFLGKAAYIRNLQDNLDALETELGNLIAKKNDVMRRVVDAERQQMRRLDGVQVWVSRVDAFKTGADELIT 89 (594)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~v~~Wl~~~~~~~y~aed~ld 89 (594)
+-+ .+.|.++......-+--++.+++-++.+++.||.||+.+ ++....+. +..+.+..++-..||++|-++|
T Consensus 299 dFl-L~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V------~ee~~nkh-~~~ed~a~~ii~kAyevEYVVD 370 (402)
T PF12061_consen 299 DFL-LKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHV------VEEPHNKH-DTNEDCATQIIRKAYEVEYVVD 370 (402)
T ss_pred HHH-HhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHH------Hhccchhh-hhhhhHHHHHHHHHhheeeeee
Confidence 444 778888888888888889999999999999999999872 34323223 3388999999999999999998
Q ss_pred hh
Q 007656 90 DG 91 (594)
Q Consensus 90 ~~ 91 (594)
-.
T Consensus 371 aC 372 (402)
T PF12061_consen 371 AC 372 (402)
T ss_pred hh
Confidence 85
No 88
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=93.75 E-value=0.077 Score=52.79 Aligned_cols=46 Identities=33% Similarity=0.449 Sum_probs=39.2
Q ss_pred CceechhHHHHHHHHHHhc-----CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE-----ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~-----~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|++..++.+..++.. .....+-++|..|+|||++|+.+.+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999888863 445667799999999999999998877
No 89
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.24 E-value=0.011 Score=53.00 Aligned_cols=65 Identities=31% Similarity=0.499 Sum_probs=31.9
Q ss_pred cCCCcceEeEecCCCCcccc--ccc-cCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceeccccccccc
Q 007656 442 VFRSLHCVRIEQCHKLKDVT--FLI-FAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALK 517 (594)
Q Consensus 442 ~~~~L~~L~L~~c~~l~~l~--~l~-~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~ 517 (594)
.++.++.|.+.+|..+.+-. .++ -.++|+.|+|++|+.+++-.- ..+..|++|+.|.|.+++...
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-----------~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-----------ACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-----------HHHHHhhhhHHHHhcCchhhh
Confidence 45555555555555544421 122 345566666666655544311 134455555555555554443
No 90
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=93.16 E-value=1.5 Score=47.38 Aligned_cols=46 Identities=30% Similarity=0.368 Sum_probs=39.7
Q ss_pred CceechhHHHHHHHHHHhc----C--CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE----E--SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~----~--~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+-+|.+..++.|++.|.- . .=.++.++|..|+|||.|++.+....
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al 374 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL 374 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh
Confidence 4459999999999999843 2 34799999999999999999999988
No 91
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.11 E-value=0.065 Score=27.42 Aligned_cols=17 Identities=29% Similarity=0.602 Sum_probs=8.4
Q ss_pred CCccEEeecccCCCCCCC
Q 007656 527 THLKEISVGYCRNLKKLP 544 (594)
Q Consensus 527 ~~L~~L~i~~C~~L~~lp 544 (594)
++|+.|++++|. |+++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 456677777665 66655
No 92
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=92.99 E-value=0.93 Score=39.25 Aligned_cols=109 Identities=14% Similarity=0.151 Sum_probs=73.5
Q ss_pred cccccchhhhhhHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHH
Q 007656 5 FQITCDGALFNRCLDCFLGKAAYIRNLQDNLDALETELGNLIAKKNDVMRRVVDAERQQMRRLDGVQVWVSRVDAFKTGA 84 (594)
Q Consensus 5 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~v~~Wl~~~~~~~y~a 84 (594)
.+++++.+ ++.|...+.+..+-...++.-.+.|..+++.|.-+..+++..-.. -+..-+.=++++.+...++
T Consensus 7 ~gaalG~~-~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~e-------ld~~~~ee~e~L~~~L~~g 78 (147)
T PF05659_consen 7 GGAALGAV-FGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVE-------LDRPRQEEIERLKELLEKG 78 (147)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhh-------cCCchhHHHHHHHHHHHHH
Confidence 34444444 888888888888888888888888888888888887775553322 1122244567888888899
Q ss_pred HHHHhhhhhhcccccccCcccccchhhhHHHHHHHHHHHHHHHHHH
Q 007656 85 DELITDGSEEIGKLCVGGYCSKNCRSSYKFGKQVARKLRDVETLIA 130 (594)
Q Consensus 85 ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 130 (594)
+++++.|..-. + +++...++.+++|+++-+.+.....
T Consensus 79 ~~LV~k~sk~~------r---~n~~kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 79 KELVEKCSKVR------R---WNLYKKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred HHHHHHhcccc------H---HHHHhhHhHHHHHHHHHHHHHHHhc
Confidence 99998874311 1 3455566778888887777776554
No 93
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=92.86 E-value=0.11 Score=43.41 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=21.4
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+|.|.|..|.||||+|+.+....
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999886
No 94
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=92.83 E-value=0.19 Score=52.14 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=39.6
Q ss_pred CCceechhHHHHHHHHHHhc----CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 157 EPTIVGLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 157 ~~~~vG~~~~~~~i~~~L~~----~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+.++||+.+++++...+.+ .....+-|+|..|.|||++++.+.+..
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999844 344556799999999999999999987
No 95
>PRK06696 uridine kinase; Validated
Probab=92.76 E-value=0.2 Score=47.22 Aligned_cols=41 Identities=12% Similarity=0.217 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHh---cCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 163 LQSQLEQVWRCLV---EESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 163 ~~~~~~~i~~~L~---~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
|+..+++|.+.+. .+...+|+|.|.+|.||||+|+.+...+
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 5566777777774 3578999999999999999999998877
No 96
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=92.59 E-value=0.19 Score=50.25 Aligned_cols=46 Identities=22% Similarity=0.367 Sum_probs=41.0
Q ss_pred CceechhHHHHHHHHHHhc------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.++.++++++++.. ..-+++.++|..|.||||+|..+.+.+
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999965 246889999999999999999999887
No 97
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=92.42 E-value=0.44 Score=49.09 Aligned_cols=56 Identities=21% Similarity=0.182 Sum_probs=42.8
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhhccCCCCCceEEEe
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWV 216 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~~~~~~~f~~~~w~ 216 (594)
.++++.+...+.+...|.... .+-++|+.|.|||++|+.+..... ....++.+.|+
T Consensus 175 ~d~~i~e~~le~l~~~L~~~~--~iil~GppGtGKT~lA~~la~~l~-~~~~~~~v~~V 230 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIKK--NIILQGPPGVGKTFVARRLAYLLT-GEKAPQRVNMV 230 (459)
T ss_pred hcccCCHHHHHHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHhc-CCcccceeeEE
Confidence 456888889999999988643 456699999999999999998873 33455555554
No 98
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.23 E-value=0.0091 Score=54.46 Aligned_cols=83 Identities=18% Similarity=0.145 Sum_probs=72.7
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLK 297 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~ 297 (594)
.+...+.||+ ..+.+-.+... |+.+..|..|+++.| .+ ..+|..++++. .++.+++..|+.+.+|.+++.+++++
T Consensus 40 ~~kr~tvld~-~s~r~vn~~~n-~s~~t~~~rl~~skn-q~-~~~~~d~~q~~-e~~~~~~~~n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 40 SFKRVTVLDL-SSNRLVNLGKN-FSILTRLVRLDLSKN-QI-KFLPKDAKQQR-ETVNAASHKNNHSQQPKSQKKEPHPK 114 (326)
T ss_pred ccceeeeehh-hhhHHHhhccc-hHHHHHHHHHhccHh-hH-hhChhhHHHHH-HHHHHHhhccchhhCCccccccCCcc
Confidence 4567788898 55566666666 788889999999999 89 89999999999 99999999999999999999999999
Q ss_pred EEecCCCC
Q 007656 298 CLNLRWTD 305 (594)
Q Consensus 298 ~L~L~~~~ 305 (594)
++++.+|.
T Consensus 115 ~~e~k~~~ 122 (326)
T KOG0473|consen 115 KNEQKKTE 122 (326)
T ss_pred hhhhccCc
Confidence 99999985
No 99
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=91.92 E-value=0.2 Score=50.45 Aligned_cols=46 Identities=30% Similarity=0.428 Sum_probs=38.8
Q ss_pred CceechhHHHHHHHHHHhc-----CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE-----ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~-----~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|++..++.+...+.. .....+-++|..|+||||+|+.+.+..
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 5589999999988877752 345677799999999999999999987
No 100
>PRK13342 recombination factor protein RarA; Reviewed
Probab=91.72 E-value=0.17 Score=52.72 Aligned_cols=46 Identities=28% Similarity=0.363 Sum_probs=38.4
Q ss_pred CceechhHHHHH---HHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQ---VWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~---i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++||.+..+.. +.+++..+....+-++|..|+||||+|+.+.+..
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 347888777555 7777888888888899999999999999998876
No 101
>PRK07261 topology modulation protein; Provisional
Probab=91.72 E-value=0.19 Score=45.17 Aligned_cols=23 Identities=30% Similarity=0.638 Sum_probs=20.5
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.|.|+|++|.||||+|+.+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999987765
No 102
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.50 E-value=0.18 Score=29.05 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=10.0
Q ss_pred CcCcEEecCCCCCCCCcchh
Q 007656 294 VNLKCLNLRWTDTLNKIPRQ 313 (594)
Q Consensus 294 ~~L~~L~L~~~~~l~~lp~~ 313 (594)
++|++|+|++| .+..+|.+
T Consensus 2 ~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCEEECCCC-cCCcCCHH
Confidence 44555555555 45555554
No 103
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.50 E-value=0.18 Score=29.05 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=10.0
Q ss_pred CcCcEEecCCCCCCCCcchh
Q 007656 294 VNLKCLNLRWTDTLNKIPRQ 313 (594)
Q Consensus 294 ~~L~~L~L~~~~~l~~lp~~ 313 (594)
++|++|+|++| .+..+|.+
T Consensus 2 ~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCEEECCCC-cCCcCCHH
Confidence 44555555555 45555554
No 104
>PRK06547 hypothetical protein; Provisional
Probab=90.62 E-value=0.45 Score=42.65 Aligned_cols=36 Identities=22% Similarity=0.209 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 168 EQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 168 ~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+.+...+......+|+|.|..|.||||+++.+....
T Consensus 4 ~~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 4 ALIAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345556667889999999999999999999988765
No 105
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=90.12 E-value=0.44 Score=45.31 Aligned_cols=46 Identities=30% Similarity=0.419 Sum_probs=38.3
Q ss_pred CceechhHHHHHHHHHH-----hcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCL-----VEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L-----~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+.-++++.=.+ +++.+-.+=++|..|+||||||..+.+..
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh
Confidence 34699988877776555 34678889999999999999999999988
No 106
>PRK07667 uridine kinase; Provisional
Probab=90.07 E-value=0.5 Score=43.36 Aligned_cols=37 Identities=22% Similarity=0.439 Sum_probs=29.5
Q ss_pred HHHHHHHHhc--CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 167 LEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 167 ~~~i~~~L~~--~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++.+.+.. +...+|+|.|..|.||||+++.+...+
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456666644 355899999999999999999998877
No 107
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=89.96 E-value=0.31 Score=41.06 Aligned_cols=22 Identities=36% Similarity=0.751 Sum_probs=20.0
Q ss_pred EEEEecCCCchhHHHHHHHHhh
Q 007656 182 IGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~~ 203 (594)
|.|.|..|.||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999988884
No 108
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=89.81 E-value=0.44 Score=48.13 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=41.0
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|++..++.+.+++..+....+-++|-.|.||||+|+.+.+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999988877677899999999999999998877
No 109
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=89.67 E-value=0.47 Score=47.45 Aligned_cols=47 Identities=23% Similarity=0.309 Sum_probs=41.8
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhhc
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
.+++|++..++.+..++.......+-++|-.|.||||+++.+.+...
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 45799999999999999888777788999999999999999998873
No 110
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=89.65 E-value=4.6 Score=43.69 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=40.0
Q ss_pred CceechhHHHHHHHHHHhcC------CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEE------SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~------~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+-+|++.-++.|++.+.-. +=.++..+|..|+|||.+++.+...+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL 462 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL 462 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh
Confidence 34599999999999998542 55899999999999999999999988
No 111
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=89.52 E-value=0.36 Score=44.39 Aligned_cols=23 Identities=43% Similarity=0.678 Sum_probs=22.0
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+|+|.|.+|.||||+|+.+...+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L 23 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL 23 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999988
No 112
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.24 E-value=0.3 Score=28.06 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=14.5
Q ss_pred cCcEEEccCCcccccchh
Q 007656 272 SLELLDISYASITELPEE 289 (594)
Q Consensus 272 ~L~~L~ls~~~l~~lp~~ 289 (594)
+|++|++++|.|+.+|..
T Consensus 3 ~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 3 NLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCEEECCCCcCCcCCHH
Confidence 788888888888888764
No 113
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.24 E-value=0.3 Score=28.06 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=14.5
Q ss_pred cCcEEEccCCcccccchh
Q 007656 272 SLELLDISYASITELPEE 289 (594)
Q Consensus 272 ~L~~L~ls~~~l~~lp~~ 289 (594)
+|++|++++|.|+.+|..
T Consensus 3 ~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 3 NLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCEEECCCCcCCcCCHH
Confidence 788888888888888764
No 114
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=89.10 E-value=0.57 Score=43.15 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=40.9
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++||-++.++.+.-.-.++++.-+-|.|+.|.||||-+..+....
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 5689999999999888899999999999999999999877777665
No 115
>PHA00729 NTP-binding motif containing protein
Probab=88.62 E-value=0.76 Score=42.83 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 168 EQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 168 ~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..+++.+...+...|.|.|..|+||||+|..+.+..
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345666666777788999999999999999998876
No 116
>PRK05480 uridine/cytidine kinase; Provisional
Probab=88.37 E-value=0.52 Score=43.90 Aligned_cols=27 Identities=37% Similarity=0.527 Sum_probs=24.2
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 177 ~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
....+|+|.|..|.||||+++.+...+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999998876
No 117
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.32 E-value=4.6 Score=42.73 Aligned_cols=25 Identities=40% Similarity=0.720 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-.+++++|.+|+||||++..+....
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988777654
No 118
>CHL00095 clpC Clp protease ATP binding subunit
Probab=88.31 E-value=0.58 Score=53.31 Aligned_cols=46 Identities=24% Similarity=0.374 Sum_probs=39.4
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++||+.+++.+++.|....-.-+-++|..|+|||+++..+...+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999977655455699999999999999888876
No 119
>PLN03025 replication factor C subunit; Provisional
Probab=88.26 E-value=0.74 Score=46.08 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=39.8
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++.+..++..++...+=++|..|.||||+|..+.+..
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4578998888888888888777777799999999999999998887
No 120
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=88.23 E-value=0.54 Score=43.34 Aligned_cols=27 Identities=41% Similarity=0.629 Sum_probs=24.8
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 177 ~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+.+.+|||.|-+|.||||+++.+...+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 356899999999999999999999988
No 121
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.10 E-value=7.8 Score=27.91 Aligned_cols=74 Identities=16% Similarity=0.197 Sum_probs=45.6
Q ss_pred hhhHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHHHH
Q 007656 14 FNRCLDCFLGKAAYIRNLQDNLDALETELGNLIAKKNDVMRRVVDAERQQMRRLDGVQVWVSRVDAFKTGADEL 87 (594)
Q Consensus 14 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~v~~Wl~~~~~~~y~aed~ 87 (594)
+++|-.-+.+.+.-..-++-+|+.|+++=..+..--.+.+...++-++....-...-..|=.++|.+...+|+|
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkme~V 79 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKMEEV 79 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 56666666666666666677777777776666555444444333333332222344558999999998888764
No 122
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=88.05 E-value=0.68 Score=51.42 Aligned_cols=46 Identities=39% Similarity=0.510 Sum_probs=37.4
Q ss_pred CceechhHHHH---HHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLE---QVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~---~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..+. .+.+.+..+.+..+-++|..|+||||+|+.+.+..
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44688877663 56666777888788899999999999999999876
No 123
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=87.89 E-value=0.68 Score=46.26 Aligned_cols=46 Identities=15% Similarity=0.124 Sum_probs=39.3
Q ss_pred CceechhHHHHHHHHHHhcCCc-eEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~-~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+...+.+..++..+.. .++=++|..|.||||+++.+.+..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 4579999999999999988765 455558999999999999998876
No 124
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=87.77 E-value=0.94 Score=42.85 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=24.9
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 177 ~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+...+++|.|..|.||||+++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999988877
No 125
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=87.71 E-value=0.67 Score=46.37 Aligned_cols=50 Identities=28% Similarity=0.409 Sum_probs=36.1
Q ss_pred ceechhHHH---HHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhhccCCCCCc
Q 007656 159 TIVGLQSQL---EQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFD 211 (594)
Q Consensus 159 ~~vG~~~~~---~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~~~~~~~f~ 211 (594)
++||.+.-. .-+-+.+..+.+...=+||..|+||||+|+.+.... ...|.
T Consensus 25 e~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~ 77 (436)
T COG2256 25 EVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFE 77 (436)
T ss_pred HhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCceE
Confidence 345554322 344556677888888899999999999999998876 44554
No 126
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.65 E-value=0.8 Score=47.34 Aligned_cols=46 Identities=24% Similarity=0.250 Sum_probs=40.5
Q ss_pred CceechhHHHHHHHHHHhcCCceE-EEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGI-IGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~-i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++.+.+++..+.+.. +=++|..|+||||+|..+...+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHh
Confidence 457999999999999999887764 7789999999999999988877
No 127
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=87.60 E-value=0.73 Score=46.77 Aligned_cols=37 Identities=19% Similarity=0.079 Sum_probs=30.6
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhhccCCCCCceEEEe
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWV 216 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~~~~~~~f~~~~w~ 216 (594)
.=..++|+|..|.||||+++.+++.+. ..+|+..+|+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~--~nhfdv~v~V 203 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT--RNHPEVELIV 203 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc--ccCCceEEEE
Confidence 335688999999999999999999983 3478888887
No 128
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=87.46 E-value=0.58 Score=42.62 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=23.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..+|+|-||=|+||||||+.+.++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999999998
No 129
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=87.45 E-value=0.8 Score=48.60 Aligned_cols=46 Identities=26% Similarity=0.400 Sum_probs=40.5
Q ss_pred CceechhHHHHHHHHHHh------cCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLV------EESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~------~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|++..++.|++.|. +..-+++-++|..|.|||||++.+....
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 357999999999999993 3466899999999999999999999877
No 130
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=87.41 E-value=0.57 Score=43.52 Aligned_cols=26 Identities=38% Similarity=0.483 Sum_probs=23.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.-.+|+|.|..|.||||+++.+....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34789999999999999999998876
No 131
>PRK08233 hypothetical protein; Provisional
Probab=87.21 E-value=0.6 Score=42.21 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..+|+|.|..|.||||+++.+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999988776
No 132
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=87.14 E-value=0.59 Score=40.57 Aligned_cols=24 Identities=46% Similarity=0.516 Sum_probs=21.9
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
--|.|.|+.|+||||+++.+.+.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 458899999999999999999988
No 133
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=86.56 E-value=3.2 Score=46.84 Aligned_cols=47 Identities=28% Similarity=0.318 Sum_probs=39.9
Q ss_pred CCceechhHHHHHHHHHHhc------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 157 EPTIVGLQSQLEQVWRCLVE------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 157 ~~~~vG~~~~~~~i~~~L~~------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+.+.+|.+..++.|+++|.. ..-.++.++|..|.||||+++.+....
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35579999999999998863 245678999999999999999999876
No 134
>PRK04195 replication factor C large subunit; Provisional
Probab=86.49 E-value=0.71 Score=49.14 Aligned_cols=46 Identities=30% Similarity=0.434 Sum_probs=39.8
Q ss_pred CceechhHHHHHHHHHHhcC----CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEE----SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~----~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++.+.+|+..- ..+.+=++|..|+||||+|+.+.+..
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45899999999999998642 26788899999999999999999987
No 135
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=86.47 E-value=3.5 Score=46.72 Aligned_cols=46 Identities=30% Similarity=0.344 Sum_probs=38.2
Q ss_pred CceechhHHHHHHHHHHhc------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++.|.+++.. ..-.++-++|..|+|||++|+.+.+..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999887642 133578899999999999999999987
No 136
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.45 E-value=1.1 Score=45.79 Aligned_cols=46 Identities=24% Similarity=0.298 Sum_probs=40.0
Q ss_pred CceechhHHHHHHHHHHhcCCce-EEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVG-IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~-~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++.+.+.+..+++. .+=++|..|+||||+|+.+....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHh
Confidence 56799999999999999887664 45799999999999999998887
No 137
>PTZ00301 uridine kinase; Provisional
Probab=86.42 E-value=0.75 Score=42.71 Aligned_cols=25 Identities=36% Similarity=0.663 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..+|||.|-.|.||||+|+.+...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999887766
No 138
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.41 E-value=1 Score=47.37 Aligned_cols=46 Identities=22% Similarity=0.298 Sum_probs=39.5
Q ss_pred CceechhHHHHHHHHHHhcCCc-eEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~-~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+.....+...+..+.+ ..+=++|..|.||||+|+.+.+..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999888888888888877 446789999999999999998876
No 139
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=86.37 E-value=0.91 Score=51.65 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=39.9
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++||+..+..++..|......-+-++|-.|+||||++..+...+
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999887755556699999999999999998877
No 140
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=86.34 E-value=0.93 Score=50.94 Aligned_cols=46 Identities=24% Similarity=0.351 Sum_probs=39.8
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+.++||+.+++.+++.|......-+-++|..|+|||++++.+...+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999977655556699999999999999998876
No 141
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=86.09 E-value=19 Score=40.16 Aligned_cols=47 Identities=23% Similarity=0.424 Sum_probs=39.7
Q ss_pred CceechhHHHHHHHHHHhc---------CCceEEEEEecCCCchhHHHHHHHHhhc
Q 007656 158 PTIVGLQSQLEQVWRCLVE---------ESVGIIGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~---------~~~~~i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
..++|.+...+.|.+.+.- ..+.+.=..|..|+|||.+|+.+...++
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lf 546 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALF 546 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhc
Confidence 5689999999999999854 2567777899999999999999988874
No 142
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=85.74 E-value=2.2 Score=35.66 Aligned_cols=48 Identities=17% Similarity=0.264 Sum_probs=38.3
Q ss_pred CceechhHHHHHHHHHHhc-------CCceEEEEEecCCCchhHHHHHHHHhhcc
Q 007656 158 PTIVGLQSQLEQVWRCLVE-------ESVGIIGLYGMGGVGKTTLLTHINNKFLE 205 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~-------~~~~~i~i~G~gG~gKttl~~~~~~~~~~ 205 (594)
..++|..-..+.|++.+.+ +..-|++..|-.|.||+.+++.+.+.+++
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~ 79 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYK 79 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHh
Confidence 4578887777777777644 36789999999999999999888888654
No 143
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=85.53 E-value=1.7 Score=38.81 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=35.9
Q ss_pred eechhHHHHHHHHHHhc---CCceEEEEEecCCCchhHHHHHHHHhhccCCCCCc
Q 007656 160 IVGLQSQLEQVWRCLVE---ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFD 211 (594)
Q Consensus 160 ~vG~~~~~~~i~~~L~~---~~~~~i~i~G~gG~gKttl~~~~~~~~~~~~~~f~ 211 (594)
++|.+..+.++.+.+.. .+..|+ |+|-.|.||+.+|+.+++...+....|-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVl-I~GE~GtGK~~lA~~IH~~s~r~~~pfi 54 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVL-ITGETGTGKELLARAIHNNSPRKNGPFI 54 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EE-EECSTTSSHHHHHHHHHHCSTTTTS-EE
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEE-EEcCCCCcHHHHHHHHHHhhhcccCCeE
Confidence 47778888888877754 356666 9999999999999999997633344453
No 144
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=85.52 E-value=1.1 Score=45.70 Aligned_cols=46 Identities=28% Similarity=0.380 Sum_probs=38.0
Q ss_pred CceechhHHHHHHHHHHhc-------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~-------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++.|++..++++.+.+.. ...+.+-++|..|.|||++|+.+.+..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999887742 124568899999999999999999977
No 145
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=85.45 E-value=0.8 Score=45.08 Aligned_cols=43 Identities=26% Similarity=0.352 Sum_probs=33.5
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..+||.+. .+-+.+..+.+..+-+||..|.||||||+.+.+..
T Consensus 144 ~hlv~q~g---llrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts 186 (554)
T KOG2028|consen 144 SHLVGQDG---LLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS 186 (554)
T ss_pred hhhcCcch---HHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc
Confidence 34455433 34455677899999999999999999999999887
No 146
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.41 E-value=1.1 Score=46.83 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=41.0
Q ss_pred CceechhHHHHHHHHHHhcCCce-EEEEEecCCCchhHHHHHHHHhhc
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVG-IIGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~-~i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
.+++|.+..+..+..++..+.+. .+=++|..|+||||+|+.+...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999998875 467999999999999999988773
No 147
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=85.34 E-value=1.5 Score=41.36 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 163 LQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 163 ~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+..++.+.+++....-..+-++|..|+|||++|+.+.+..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44567777777666667788899999999999999999887
No 148
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.31 E-value=1.1 Score=47.83 Aligned_cols=47 Identities=28% Similarity=0.296 Sum_probs=40.0
Q ss_pred CceechhHHHHHHHHHHhcCCceE-EEEEecCCCchhHHHHHHHHhhc
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGI-IGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~-i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
.+++|.+..+..+...+..+.+.. +=++|..|+||||+|+.+...+.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457999999999999998876644 56899999999999999988763
No 149
>PRK06762 hypothetical protein; Provisional
Probab=85.29 E-value=0.89 Score=40.46 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=21.9
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+|.|.|+.|.||||+|+.+....
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 678999999999999999998876
No 150
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=85.28 E-value=1.3 Score=44.28 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=40.0
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..+||.+..+..++-.+.+....-+.|.|..|.||||+++.+..-.
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 4579999999998888888777778899999999999999987665
No 151
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=84.83 E-value=1.3 Score=47.73 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=40.5
Q ss_pred CceechhHHHHHHHHHHhcCCce-EEEEEecCCCchhHHHHHHHHhhc
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVG-IIGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~-~i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
.+++|.+..++.+.+++..+.+. .+=++|..|+||||+|+.+...+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 45799999999999999887665 466899999999999999988873
No 152
>PRK13236 nitrogenase reductase; Reviewed
Probab=84.64 E-value=0.79 Score=45.28 Aligned_cols=29 Identities=31% Similarity=0.599 Sum_probs=23.8
Q ss_pred hcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 175 VEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 175 ~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++++++.+.|=||+||||.+-.+.-.+
T Consensus 2 ~~~~~~~~~~~GKGGVGKTt~a~NLA~~L 30 (296)
T PRK13236 2 TDENIRQIAFYGKGGIGKSTTSQNTLAAM 30 (296)
T ss_pred CCcCceEEEEECCCcCCHHHHHHHHHHHH
Confidence 45688999999999999999876655555
No 153
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=84.55 E-value=1.2 Score=45.87 Aligned_cols=46 Identities=30% Similarity=0.382 Sum_probs=38.0
Q ss_pred CceechhHHHHHHHHHHhc-------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~-------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++.|++..++++.+.+.. ...+.+-++|..|.|||++|+.+.+..
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh
Confidence 4678999999999887632 234567889999999999999999876
No 154
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=84.48 E-value=1.5 Score=42.33 Aligned_cols=45 Identities=24% Similarity=0.277 Sum_probs=32.5
Q ss_pred ceechhHHHHHHHH---HHhc------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 159 TIVGLQSQLEQVWR---CLVE------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 159 ~~vG~~~~~~~i~~---~L~~------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++|++..++.|.+ +..- .....+-++|..|.||||+|+.+....
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 47898777666543 3311 234556789999999999999998875
No 155
>PRK10865 protein disaggregation chaperone; Provisional
Probab=84.42 E-value=1.3 Score=50.62 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=39.6
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++||+.++..+++.|....-.-+-++|-.|+|||+++..+...+
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999977655555589999999999999988877
No 156
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=84.38 E-value=0.97 Score=33.40 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=20.3
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+|.|.|..|.||||+++.+...+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999988875
No 157
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.25 E-value=1.4 Score=46.80 Aligned_cols=47 Identities=28% Similarity=0.266 Sum_probs=40.5
Q ss_pred CceechhHHHHHHHHHHhcCCceE-EEEEecCCCchhHHHHHHHHhhc
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGI-IGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~-i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
.+++|.+..++.+..++..+.+.. +-++|..|+||||+|+.+.....
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457999999999999998887654 48999999999999999988873
No 158
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.98 E-value=1.4 Score=48.04 Aligned_cols=47 Identities=23% Similarity=0.248 Sum_probs=40.7
Q ss_pred CceechhHHHHHHHHHHhcCCceE-EEEEecCCCchhHHHHHHHHhhc
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGI-IGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~-i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
.+++|.+..+..+.+.+..+.+.. +=++|..|+||||+|..+...+.
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 457999999999999998887755 77999999999999999888773
No 159
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=83.83 E-value=1.3 Score=41.03 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=26.8
Q ss_pred HHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 172 RCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 172 ~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+.+...++++|+++|..|.||||++..+....
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34455689999999999999999998877664
No 160
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=83.77 E-value=0.65 Score=26.65 Aligned_cols=17 Identities=47% Similarity=0.692 Sum_probs=12.1
Q ss_pred cCcEEEccCCcccccch
Q 007656 272 SLELLDISYASITELPE 288 (594)
Q Consensus 272 ~L~~L~ls~~~l~~lp~ 288 (594)
+|++|++++|++++||.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 67777777777777774
No 161
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=83.75 E-value=21 Score=36.35 Aligned_cols=26 Identities=42% Similarity=0.581 Sum_probs=21.8
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.-.++.++|..|+||||++..+....
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l 230 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL 230 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999887776654
No 162
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=83.71 E-value=1.6 Score=42.36 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=27.6
Q ss_pred HHHHHHHh---cCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 168 EQVWRCLV---EESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 168 ~~i~~~L~---~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++..+. ...-.++.++|..|.||||+++.+++..
T Consensus 29 ~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 29 KRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 34444443 2345678899999999999999999887
No 163
>PF05729 NACHT: NACHT domain
Probab=83.67 E-value=1 Score=39.79 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=21.7
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+++-|.|.+|.||||+++.+....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH
Confidence 468899999999999999988887
No 164
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=83.56 E-value=1.3 Score=38.18 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.3
Q ss_pred eEEEEEecCCCchhHHHHHHHHhhc
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
.+|.|+|..|.||||+++.+.+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~ 25 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK 25 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999999883
No 165
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.56 E-value=1.4 Score=46.87 Aligned_cols=47 Identities=19% Similarity=0.245 Sum_probs=40.9
Q ss_pred CceechhHHHHHHHHHHhcCCceE-EEEEecCCCchhHHHHHHHHhhc
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGI-IGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~-i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
.++||.+..++.+..++..+++.. +=++|..|+||||+|+.+...+.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 458999999999999998887765 56899999999999999888773
No 166
>PRK05541 adenylylsulfate kinase; Provisional
Probab=83.48 E-value=1.4 Score=39.62 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=23.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.-.+|.+.|+.|.||||+++.++..+
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l 31 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL 31 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34588999999999999999999988
No 167
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=83.38 E-value=0.92 Score=41.20 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=21.0
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+|+|.|..|.||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998875
No 168
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=83.36 E-value=2.2 Score=41.52 Aligned_cols=35 Identities=26% Similarity=0.272 Sum_probs=28.8
Q ss_pred HHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 169 QVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 169 ~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+.-+++...++.++.|.|..|.|||||+..+.+.+
T Consensus 94 ~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 94 RNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33444455689999999999999999999988876
No 169
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=83.22 E-value=0.94 Score=41.71 Aligned_cols=23 Identities=43% Similarity=0.661 Sum_probs=20.7
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+|+|.|..|.||||+++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999987765
No 170
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.18 E-value=1.6 Score=45.97 Aligned_cols=46 Identities=26% Similarity=0.289 Sum_probs=39.6
Q ss_pred CceechhHHHHHHHHHHhcCCce-EEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVG-IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~-~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++||.+...+.+.+.+..+.+. .+=++|..|+||||+|+.+...+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHH
Confidence 56899999999888888888776 67799999999999999887755
No 171
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=83.16 E-value=0.92 Score=42.58 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=21.2
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+|||.|-.|.||||+++.+...+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998877
No 172
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=83.03 E-value=1.7 Score=43.30 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=39.7
Q ss_pred CceechhHHHHHHHHHHhcCCce-EEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVG-IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~-~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++.+.+++..+.+. ..-++|..|.||||+|+.+...+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l 50 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKI 50 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999887654 55789999999999999998876
No 173
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.98 E-value=1.5 Score=49.14 Aligned_cols=47 Identities=23% Similarity=0.295 Sum_probs=41.3
Q ss_pred CceechhHHHHHHHHHHhcCCceEE-EEEecCCCchhHHHHHHHHhhc
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGII-GLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i-~i~G~gG~gKttl~~~~~~~~~ 204 (594)
.+++|.+..++.+.+++..+++... =++|..|+||||+|+.+.+.+.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 4589999999999999988877665 6899999999999999998874
No 174
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=82.88 E-value=1.6 Score=42.69 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=23.1
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 177 ~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
....+|||.|-.|.||||+++.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999998776655
No 175
>PRK04040 adenylate kinase; Provisional
Probab=82.88 E-value=1.3 Score=40.31 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=22.0
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+|.+.|+.|.||||+++.+....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 578999999999999999988877
No 176
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=82.68 E-value=0.77 Score=26.39 Aligned_cols=17 Identities=24% Similarity=0.604 Sum_probs=12.3
Q ss_pred CCCccEEeecccCCCCC
Q 007656 526 FTHLKEISVGYCRNLKK 542 (594)
Q Consensus 526 l~~L~~L~i~~C~~L~~ 542 (594)
+|+|+.|++++|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46777788888877664
No 177
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.56 E-value=1.8 Score=46.80 Aligned_cols=47 Identities=26% Similarity=0.323 Sum_probs=40.7
Q ss_pred CceechhHHHHHHHHHHhcCCceE-EEEEecCCCchhHHHHHHHHhhc
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGI-IGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~-i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
.++||.+..++.+.+++..+++.. +=++|-.|+||||+++.+...+.
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 458999999999999999887654 47899999999999999888874
No 178
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=82.50 E-value=1.6 Score=43.92 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=41.2
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+.+||.+..+..++..+.+..+.-+-|.|-.|.||||+++.++.-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 5689999999999999988888877799999999999999998766
No 179
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=82.26 E-value=1.7 Score=40.27 Aligned_cols=23 Identities=39% Similarity=0.660 Sum_probs=19.8
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.|+|+|-||+||||++..+...+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l 24 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRL 24 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHH
Confidence 58999999999999988855555
No 180
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.19 E-value=2 Score=46.57 Aligned_cols=46 Identities=22% Similarity=0.246 Sum_probs=39.9
Q ss_pred CceechhHHHHHHHHHHhcCCc-eEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~-~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+.....+.+++..+++ ..+=++|..|+||||+|+.+.+.+
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999988865 455789999999999999988876
No 181
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=81.89 E-value=1.5 Score=41.16 Aligned_cols=46 Identities=22% Similarity=0.426 Sum_probs=38.0
Q ss_pred CceechhHHHHHHHHHHhc----CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~----~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
++++|.+.+++.+++.... ....-+=+||..|.|||++++.+.+..
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 5689999999988876533 355556679999999999999999887
No 182
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=81.86 E-value=1.4 Score=39.94 Aligned_cols=26 Identities=35% Similarity=0.388 Sum_probs=22.9
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
++.+|.|.|..|.||||+++.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999888765
No 183
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=81.85 E-value=1.9 Score=49.43 Aligned_cols=46 Identities=20% Similarity=0.376 Sum_probs=38.9
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++||+.++..++..|....-.-+-++|-.|+|||+++..+...+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3479999999999999977655555589999999999999888876
No 184
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=81.81 E-value=1.9 Score=37.97 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 165 SQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 165 ~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++++.+++.+ +++.++|..|+||+||+..+....
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 356677787876 677889999999999998888764
No 185
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.71 E-value=1.9 Score=46.60 Aligned_cols=47 Identities=19% Similarity=0.206 Sum_probs=41.2
Q ss_pred CceechhHHHHHHHHHHhcCCceE-EEEEecCCCchhHHHHHHHHhhc
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGI-IGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~-i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
.+++|.+..++.+.+++..+++.. +=++|..|+||||+|+.+...+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 468999999999999999987766 57899999999999999888774
No 186
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=81.57 E-value=1.6 Score=38.92 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=23.4
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...+++|+|..|.||||++..+...+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 46799999999999999999988776
No 187
>PRK06851 hypothetical protein; Provisional
Probab=81.48 E-value=19 Score=36.48 Aligned_cols=39 Identities=26% Similarity=0.233 Sum_probs=30.9
Q ss_pred echhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 161 VGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 161 vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.|.-...+.+. .+--+++-|.|..|.||||+++.+....
T Consensus 200 ~G~~s~~~~l~----~~~~~~~~i~G~pG~GKstl~~~i~~~a 238 (367)
T PRK06851 200 KGAVDFVPSLT----EGVKNRYFLKGRPGTGKSTMLKKIAKAA 238 (367)
T ss_pred CcHHhhHHhHh----cccceEEEEeCCCCCcHHHHHHHHHHHH
Confidence 56665555554 4556778899999999999999999987
No 188
>PF13173 AAA_14: AAA domain
Probab=81.32 E-value=1.6 Score=36.84 Aligned_cols=24 Identities=50% Similarity=0.661 Sum_probs=21.7
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+++.|.|.-|+||||+++.+..+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999988876
No 189
>PRK06835 DNA replication protein DnaC; Validated
Probab=81.23 E-value=38 Score=33.89 Aligned_cols=25 Identities=36% Similarity=0.499 Sum_probs=22.7
Q ss_pred eEEEEEecCCCchhHHHHHHHHhhc
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
..+-++|-.|.|||+|+..+.+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~ 208 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL 208 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH
Confidence 6788999999999999999999873
No 190
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=80.89 E-value=1.4 Score=39.89 Aligned_cols=23 Identities=35% Similarity=0.738 Sum_probs=21.1
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+|+|.|..|.||||+++.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999988876
No 191
>PRK03839 putative kinase; Provisional
Probab=80.85 E-value=1.6 Score=39.50 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=21.0
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.|-|.|+.|.||||+++.+....
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47789999999999999999987
No 192
>COG3899 Predicted ATPase [General function prediction only]
Probab=80.84 E-value=2.4 Score=48.32 Aligned_cols=47 Identities=17% Similarity=0.384 Sum_probs=41.1
Q ss_pred eechhHHHHHHHHHHhc---CCceEEEEEecCCCchhHHHHHHHHhhccC
Q 007656 160 IVGLQSQLEQVWRCLVE---ESVGIIGLYGMGGVGKTTLLTHINNKFLES 206 (594)
Q Consensus 160 ~vG~~~~~~~i~~~L~~---~~~~~i~i~G~gG~gKttl~~~~~~~~~~~ 206 (594)
++||+.+.+.+...+.. +.-.++.+.|..|+|||.+.+.+...+.+.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~ 51 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ 51 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhcc
Confidence 68999999999988865 567799999999999999999999988543
No 193
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.80 E-value=2.4 Score=43.32 Aligned_cols=46 Identities=22% Similarity=0.322 Sum_probs=40.1
Q ss_pred CceechhHHHHHHHHHHhcCCce-EEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVG-IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~-~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+...+.+.+.+..+.+. .+=++|..|.||||+|+.+.+..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l 63 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKI 63 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999887654 67789999999999999987776
No 194
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=80.59 E-value=2.3 Score=46.47 Aligned_cols=46 Identities=26% Similarity=0.356 Sum_probs=40.2
Q ss_pred CceechhHHHHHHHHHHhcCCce-EEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVG-IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~-~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..+..+..++..+++. .+=++|..|+||||+|+.+...+
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 45899999999999999988765 56789999999999999888876
No 195
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=80.29 E-value=3.2 Score=46.40 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=39.1
Q ss_pred CCceechhHHHHHHHHHHhc----C-CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 157 EPTIVGLQSQLEQVWRCLVE----E-SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 157 ~~~~vG~~~~~~~i~~~L~~----~-~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+.++||+.++++|...|.. . .-.++=|+|..|.|||+.++.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrEL 805 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLL 805 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999865 2 33566799999999999999998776
No 196
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=80.23 E-value=2.1 Score=47.07 Aligned_cols=47 Identities=23% Similarity=0.269 Sum_probs=39.6
Q ss_pred CceechhHHHHHHHHHHhcCCce-EEEEEecCCCchhHHHHHHHHhhc
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVG-IIGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~-~i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
.+++|.+..++.+.+++..+++. .+=++|-.|+||||+++.+.+.+.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45899999999999999888654 335899999999999998888773
No 197
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.20 E-value=2.3 Score=46.25 Aligned_cols=47 Identities=21% Similarity=0.320 Sum_probs=39.8
Q ss_pred CceechhHHHHHHHHHHhcCCce-EEEEEecCCCchhHHHHHHHHhhc
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVG-IIGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~-~i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
.++||.+..+..+.+++..+++. .+=++|..|+||||+|+.+...+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45799999999999999888774 457899999999999999877763
No 198
>PRK10865 protein disaggregation chaperone; Provisional
Probab=80.19 E-value=99 Score=35.66 Aligned_cols=47 Identities=26% Similarity=0.417 Sum_probs=38.5
Q ss_pred CceechhHHHHHHHHHHhcC---------CceEEEEEecCCCchhHHHHHHHHhhc
Q 007656 158 PTIVGLQSQLEQVWRCLVEE---------SVGIIGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~---------~~~~i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
..++|.+..++.|...+... ....+-++|..|+|||++|+.+.....
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 56799999988888888531 235788999999999999999998763
No 199
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=80.17 E-value=2.3 Score=46.46 Aligned_cols=47 Identities=23% Similarity=0.253 Sum_probs=40.3
Q ss_pred CceechhHHHHHHHHHHhcCCceE-EEEEecCCCchhHHHHHHHHhhc
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGI-IGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~-i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
.++||.+..+..+...+..+.+.. +=++|..|+||||+|+.+...+.
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~ 63 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLN 63 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 468999999999999999887755 46899999999999999888774
No 200
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=80.02 E-value=1.9 Score=37.01 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.2
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+|-++|..|.||||+++.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 46789999999999999988766
No 201
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=79.93 E-value=2.2 Score=46.32 Aligned_cols=47 Identities=19% Similarity=0.308 Sum_probs=41.0
Q ss_pred CceechhHHHHHHHHHHhcCCce-EEEEEecCCCchhHHHHHHHHhhc
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVG-IIGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~-~i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
.+++|.+..++.+.+++..+++. .+=++|..|+||||+|+.+.+.+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence 56899999999999999888765 477899999999999999988773
No 202
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=79.40 E-value=1.4 Score=43.08 Aligned_cols=24 Identities=38% Similarity=0.710 Sum_probs=20.3
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+.|+|+|-||+||||++..+.-.+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~L 24 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAAL 24 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHH
Confidence 468999999999999887776666
No 203
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=79.13 E-value=3 Score=42.37 Aligned_cols=46 Identities=13% Similarity=0.274 Sum_probs=39.7
Q ss_pred CceechhHHHHHHHHHHhcCCce-EEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVG-IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~-~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++.+.+++..+.+. .+=++|..|+||||+|+.+....
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l 60 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKAL 60 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999887665 45679999999999999988876
No 204
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=79.01 E-value=2.6 Score=47.17 Aligned_cols=46 Identities=24% Similarity=0.357 Sum_probs=38.3
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++||+.++..+++.|....-.-+-++|-.|+|||++++.+....
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3479999999999999877543444589999999999999988765
No 205
>PRK06217 hypothetical protein; Validated
Probab=79.00 E-value=2 Score=38.92 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.1
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.|.|.|..|.||||+++.+....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999886
No 206
>PRK13975 thymidylate kinase; Provisional
Probab=78.88 E-value=2 Score=39.31 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=22.2
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..|.|.|+.|.||||+++.+....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999987
No 207
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.85 E-value=2.7 Score=45.10 Aligned_cols=46 Identities=24% Similarity=0.340 Sum_probs=39.9
Q ss_pred CceechhHHHHHHHHHHhcCCceE-EEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGI-IGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~-i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++.+..++..+.+.. +=++|..|+||||+|+.+...+
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999887654 4689999999999999988776
No 208
>PRK00889 adenylylsulfate kinase; Provisional
Probab=78.70 E-value=2.2 Score=38.33 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-.+|.+.|..|.||||+++.+....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999988876
No 209
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=78.58 E-value=5.7 Score=40.41 Aligned_cols=49 Identities=24% Similarity=0.328 Sum_probs=39.6
Q ss_pred CceechhHHHHHHHHHHhc----CCceEEEEEecCCCchhHHHHHHHHhhccC
Q 007656 158 PTIVGLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKFLES 206 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~----~~~~~i~i~G~gG~gKttl~~~~~~~~~~~ 206 (594)
..+.+|+++++++...|.. +...-+-|.|-.|.|||+.++.+.......
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhh
Confidence 4489999999999988854 333337789999999999999999988433
No 210
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=78.58 E-value=2 Score=38.71 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.2
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++.|.|..|.||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 368899999999999999987775
No 211
>PRK08084 DNA replication initiation factor; Provisional
Probab=78.20 E-value=3.9 Score=38.79 Aligned_cols=46 Identities=24% Similarity=0.320 Sum_probs=32.2
Q ss_pred CceechhH-HHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQS-QLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~-~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.-++|... .+..+.++........+-++|..|.|||+|++.+.+..
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~ 69 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAEL 69 (235)
T ss_pred ccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44556332 34444444444555678899999999999999999876
No 212
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=78.14 E-value=3.8 Score=38.57 Aligned_cols=43 Identities=19% Similarity=0.299 Sum_probs=29.5
Q ss_pred echhHHH-HHHHHHHhc-CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 161 VGLQSQL-EQVWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 161 vG~~~~~-~~i~~~L~~-~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.|..... ..+.++... .....+-++|-.|.|||++|+.+++..
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4554333 333333332 344567899999999999999999976
No 213
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=77.90 E-value=2 Score=35.42 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=19.6
Q ss_pred EEEEecCCCchhHHHHHHHHhh
Q 007656 182 IGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~~ 203 (594)
|.++|-.|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6789999999999999888765
No 214
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=77.87 E-value=11 Score=39.55 Aligned_cols=116 Identities=22% Similarity=0.349 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCcccccchhhhHHHHHHHHHHHHHHHHHHcCccce-ecccccc---
Q 007656 68 DGVQVWVSRVDAFKTGADELITDGSEEIGKLCVGGYCSKNCRSSYKFGKQVARKLRDVETLIAEGVFEA-VATEVVP--- 143 (594)
Q Consensus 68 ~~v~~Wl~~~~~~~y~aed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~--- 143 (594)
.+++.|.++=++++ ..+|++-.+.+ + .-+.+++...+.+..+++.+++-... .+..+..
T Consensus 317 ~q~K~~~kqqk~i~-~~K~~ia~~g~----------g------~a~~~rka~s~~K~~~km~~~gL~ek~~~~k~l~~~f 379 (614)
T KOG0927|consen 317 NQMKAYEKQQKQIA-HMKDLIARFGH----------G------SAKLGRKAQSKEKTLDKMEADGLTEKVVGEKVLSFRF 379 (614)
T ss_pred HHHHHHHHHHhHHH-HhhHHHHhhcc----------c------chhhhHHHhhhhhhHHHHhhccccccccCCceEEEEc
Confidence 45777777766654 45555554432 0 12445666666666666666552111 1100000
Q ss_pred ---CCCCCCccccCCCCCceechhHHHHHHHHHHhc--CCceEEEEEecCCCchhHHHHHHHHhhc
Q 007656 144 ---ERAPEPVADKRPIEPTIVGLQSQLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 144 ---~~~~~~~~~~~~~~~~~vG~~~~~~~i~~~L~~--~~~~~i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
...|++.+.. ...-+|.++.. -+.+.|.- +.=+.++++|..|.||+|+++.++-+..
T Consensus 380 ~~vg~~p~pvi~~---~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~ 441 (614)
T KOG0927|consen 380 PEVGKIPPPVIMV---QNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ 441 (614)
T ss_pred ccccCCCCCeEEE---eccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc
Confidence 1234444433 12224555443 33333322 3456789999999999999999999874
No 215
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=77.81 E-value=3.2 Score=44.14 Aligned_cols=47 Identities=23% Similarity=0.290 Sum_probs=39.7
Q ss_pred CceechhHHHHHHHHHHhcCCc-eEEEEEecCCCchhHHHHHHHHhhc
Q 007656 158 PTIVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~-~~i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
.+++|.+..+..+...+..+.+ ..+=++|..|+||||+|+.+...+.
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4579999999988888887765 4666899999999999999998873
No 216
>CHL00181 cbbX CbbX; Provisional
Probab=77.68 E-value=3.3 Score=40.59 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=32.1
Q ss_pred CceechhHHHHHHHHHH---hc------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCL---VE------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L---~~------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..+++|.+.. .- ..-..+-+.|..|.||||+|+.+....
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 35788877777655443 11 112336689999999999999997765
No 217
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=77.68 E-value=3 Score=47.17 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=41.1
Q ss_pred CceechhHHHHHHHHHHhcCCceE-EEEEecCCCchhHHHHHHHHhhc
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGI-IGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~-i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
.+|+|.+..++.+..++..+++.. +=++|..|+||||+|+.+.+.+.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 457999999999999999987765 67899999999999999988874
No 218
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=77.66 E-value=32 Score=26.89 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=36.7
Q ss_pred hhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHHHHHh
Q 007656 21 FLGKAAYIRNLQDNLDALETELGNLIAKKNDVMRRVVDAERQQMRRLDGVQVWVSRVDAFKTGADELIT 89 (594)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~v~~Wl~~~~~~~y~aed~ld 89 (594)
+..-+.-......+...++.+++.|.+-...+...++.++.+...-....+.--..+..+...+.+|++
T Consensus 20 LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL~ 88 (89)
T PF13747_consen 20 LEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVLD 88 (89)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333333444444566666666666666666666666655443333333444555555555555554
No 219
>PRK03846 adenylylsulfate kinase; Provisional
Probab=77.64 E-value=2.4 Score=39.00 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=24.1
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 177 ~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..-.++.+.|..|.||||+++.+...+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998876
No 220
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=77.58 E-value=2.2 Score=37.34 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++.|+|..|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 4788999999999999987766554
No 221
>PRK00625 shikimate kinase; Provisional
Probab=77.56 E-value=2.2 Score=38.27 Aligned_cols=22 Identities=32% Similarity=0.381 Sum_probs=20.0
Q ss_pred EEEEecCCCchhHHHHHHHHhh
Q 007656 182 IGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~~ 203 (594)
|-++||.|.||||+++.+....
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999998876
No 222
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=77.49 E-value=3.5 Score=42.48 Aligned_cols=46 Identities=26% Similarity=0.335 Sum_probs=37.6
Q ss_pred CceechhHHHHHHHHHHhc-------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~-------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++.|.+..++++.+.+.. ...+.+-++|..|.|||++|+.+.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l 203 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT 203 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999998888877632 245678899999999999999999876
No 223
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=77.41 E-value=2.1 Score=37.67 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=21.0
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+++|+|..|.||||++..+....
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999988887
No 224
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=77.24 E-value=2 Score=37.01 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.8
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+|.|.|..|.||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999988876
No 225
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=76.99 E-value=2.3 Score=38.36 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.-+|||.|+...||||||+.+..-+
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f 28 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRFF 28 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHHc
Confidence 3579999999999999999877655
No 226
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=76.88 E-value=3.9 Score=41.57 Aligned_cols=47 Identities=17% Similarity=0.199 Sum_probs=41.0
Q ss_pred CceechhHHHHHHHHHHhcCCceE-EEEEecCCCchhHHHHHHHHhhc
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGI-IGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~-i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
.+++|.+..+..+.+.+..+.+.. +=++|..|+||+|+|..+...+.
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Ll 66 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLL 66 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 568999999999999999987665 77999999999999988877763
No 227
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=76.84 E-value=4.1 Score=41.85 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=39.1
Q ss_pred CceechhHHHHHHHHHHhcCC----------ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEES----------VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~----------~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
++++|.+..++.+.+.+..+. ...+=++|..|+||||+|..+...+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999998764 4557789999999999999988776
No 228
>PRK00131 aroK shikimate kinase; Reviewed
Probab=76.68 E-value=2.7 Score=37.55 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-..|-+.|+.|.||||+++.+....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3478899999999999999998887
No 229
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=76.53 E-value=2.2 Score=36.01 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.5
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..+.+.|..|.||||+++.+....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 467899999999999999998887
No 230
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=76.44 E-value=2.7 Score=35.41 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=19.2
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-+.+-|+|-.|.|||++++.+....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999988876
No 231
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=76.32 E-value=2.7 Score=36.98 Aligned_cols=25 Identities=36% Similarity=0.647 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..+++|+|..+.|||||...+-..+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L 26 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKL 26 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHH
Confidence 4789999999999999999988877
No 232
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=76.28 E-value=3.8 Score=41.55 Aligned_cols=38 Identities=34% Similarity=0.479 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHhcC----CceEEEEEecCCCchhH-HHHHHHH
Q 007656 164 QSQLEQVWRCLVEE----SVGIIGLYGMGGVGKTT-LLTHINN 201 (594)
Q Consensus 164 ~~~~~~i~~~L~~~----~~~~i~i~G~gG~gKtt-l~~~~~~ 201 (594)
.+....+..++.++ +-+++.++|.-|+|||| ||++...
T Consensus 184 ~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar 226 (407)
T COG1419 184 SEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAAR 226 (407)
T ss_pred HHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHH
Confidence 33444555555554 47999999999999998 5555443
No 233
>PRK05439 pantothenate kinase; Provisional
Probab=76.23 E-value=3.8 Score=40.46 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=23.9
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 177 ~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
....+|||.|-.|.||||+++.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999887755
No 234
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=76.23 E-value=2.1 Score=41.90 Aligned_cols=24 Identities=33% Similarity=0.656 Sum_probs=20.2
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
++|+|+|=||+||||++-.+.-.+
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~L 25 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAAL 25 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Confidence 578999999999999887766655
No 235
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=76.17 E-value=5.3 Score=33.95 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=27.1
Q ss_pred HHHHHHHHhc--CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 167 LEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 167 ~~~i~~~L~~--~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++-+.|.. ..-.+|.+.|.-|.||||+++.+...+
T Consensus 8 t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 8 MDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3344444433 233478999999999999999999887
No 236
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=76.08 E-value=2.6 Score=36.72 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=21.5
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+|.|.|..|.||||+++.+.+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~ 24 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL 24 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh
Confidence 68899999999999999999987
No 237
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=75.83 E-value=2.6 Score=35.87 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=21.1
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|+|..|.||||+++.+....
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 478999999999999999877765
No 238
>PRK08727 hypothetical protein; Validated
Probab=75.76 E-value=7.9 Score=36.66 Aligned_cols=43 Identities=23% Similarity=0.187 Sum_probs=29.5
Q ss_pred echhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 161 VGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 161 vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+|-......+...........+-++|..|.|||++++.+.+..
T Consensus 23 ~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~ 65 (233)
T PRK08727 23 AAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAA 65 (233)
T ss_pred CCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3333334433333333444568999999999999999998887
No 239
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=75.75 E-value=2.2 Score=39.81 Aligned_cols=24 Identities=33% Similarity=0.699 Sum_probs=19.7
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
++|++.|-||+||||.+..+.-.+
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~l 24 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAAL 24 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHH
Confidence 468999999999999877666655
No 240
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=75.62 E-value=2.3 Score=38.33 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.3
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
++|.++|..|.||||+++.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 478999999999999999988865
No 241
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=75.62 E-value=2.4 Score=37.40 Aligned_cols=20 Identities=40% Similarity=0.650 Sum_probs=18.3
Q ss_pred EEEEEecCCCchhHHHHHHH
Q 007656 181 IIGLYGMGGVGKTTLLTHIN 200 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~ 200 (594)
.|.|.|..|+||||.++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58899999999999998877
No 242
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=75.49 E-value=3.2 Score=36.60 Aligned_cols=24 Identities=42% Similarity=0.693 Sum_probs=22.0
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|+|..|.||||++..+....
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999988876
No 243
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=75.48 E-value=4.5 Score=40.87 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=40.9
Q ss_pred CceechhHHHHHHHHHHhcCCce-EEEEEecCCCchhHHHHHHHHhhc
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVG-IIGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~-~i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
..++|.+.....+...+..+.+. .+=+.|..|+||||+|..+...+.
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Ll 70 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHIL 70 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHc
Confidence 56899999999999999988764 477899999999999998888773
No 244
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=75.42 E-value=2.8 Score=37.68 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.4
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
++|-+.|..|.||||+++.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 478899999999999999988775
No 245
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.40 E-value=3.5 Score=45.02 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=38.8
Q ss_pred CceechhHHHHHHHHHHhcC-----CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEE-----SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~-----~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++++..|+... .-.++.++|..|.||||+++.+....
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 55899999999999999763 33569999999999999999988765
No 246
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=75.33 E-value=2.8 Score=40.65 Aligned_cols=24 Identities=25% Similarity=0.574 Sum_probs=22.2
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
++|+|+|.+|.|||||+..+-..+
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L 25 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRL 25 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999988887
No 247
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=75.21 E-value=4.7 Score=42.00 Aligned_cols=46 Identities=28% Similarity=0.382 Sum_probs=37.0
Q ss_pred CceechhHHHHHHHHHHhc-------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~-------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++.|++..++++.+.+.- .....+-++|..|.|||++|+.+.+..
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET 241 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4578999998888887632 234567799999999999999999976
No 248
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=75.19 E-value=2.5 Score=34.38 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=18.4
Q ss_pred EEEecCCCchhHHHHHHHHhh
Q 007656 183 GLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 183 ~i~G~gG~gKttl~~~~~~~~ 203 (594)
=|+|..|+|||++++.+...+
T Consensus 2 ~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 2 WIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999977776
No 249
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=75.16 E-value=4.6 Score=42.43 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=40.4
Q ss_pred CceechhHHHHHHHHHHhcCCc-eEEEEEecCCCchhHHHHHHHHhhc
Q 007656 158 PTIVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~-~~i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
.+++|.+..+..+.+++..+.+ ..+=++|..|.||||+|+.+...+.
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999988876 4467899999999999999888763
No 250
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=75.06 E-value=2.5 Score=39.69 Aligned_cols=26 Identities=31% Similarity=0.416 Sum_probs=21.6
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.=-.++|+|-.|+|||||++.+..-.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999998877654
No 251
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=74.96 E-value=2.6 Score=39.41 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=21.9
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.=.++||+|-.|.|||||++.+..-.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 44679999999999999999876644
No 252
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=74.93 E-value=2.6 Score=37.10 Aligned_cols=25 Identities=40% Similarity=0.724 Sum_probs=22.5
Q ss_pred eEEEEEecCCCchhHHHHHHHHhhc
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
.|++|+|-.|.|||||+..+..+..
T Consensus 33 eVLgiVGESGSGKtTLL~~is~rl~ 57 (258)
T COG4107 33 EVLGIVGESGSGKTTLLKCISGRLT 57 (258)
T ss_pred cEEEEEecCCCcHHhHHHHHhcccC
Confidence 4799999999999999999988873
No 253
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=74.88 E-value=4.7 Score=39.94 Aligned_cols=46 Identities=28% Similarity=0.394 Sum_probs=39.0
Q ss_pred CceechhHHHHHHHHHHhc-------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~-------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++-|.++++++|-+.+.- +..+-+=++|..|-|||-||+.+.|+.
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T 209 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT 209 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 4567899999999888743 366778899999999999999999986
No 254
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=74.82 E-value=4 Score=40.89 Aligned_cols=46 Identities=20% Similarity=0.364 Sum_probs=37.7
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+.++|.+..++.+.-.+.+.+...+=+.|..|.||||+++.+..-+
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 5679999988888776665556667799999999999999987765
No 255
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=74.56 E-value=2.9 Score=32.75 Aligned_cols=23 Identities=43% Similarity=0.706 Sum_probs=19.8
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
++.+.|.+|.||||++..+....
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l 23 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAAL 23 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 36788999999999998888877
No 256
>PRK13531 regulatory ATPase RavA; Provisional
Probab=74.53 E-value=6 Score=41.45 Aligned_cols=44 Identities=11% Similarity=0.172 Sum_probs=36.4
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++|+++.++.+...+..+.- +=+.|..|.|||++|+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag~h--VLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGES--VFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccCCC--EEEECCCChhHHHHHHHHHHHh
Confidence 4579999999999888876543 3468999999999999999876
No 257
>PRK13947 shikimate kinase; Provisional
Probab=74.52 E-value=2.9 Score=37.32 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.8
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-|-+.|+.|.||||+++.+...+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 37789999999999999998887
No 258
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=74.38 E-value=3.1 Score=38.07 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=21.4
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+|.|.|..|.||||+++.+....
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998887
No 259
>PRK00300 gmk guanylate kinase; Provisional
Probab=74.11 E-value=2.8 Score=38.69 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-.+|.|+|..|.||||+++.+....
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999998875
No 260
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=74.08 E-value=2.5 Score=41.21 Aligned_cols=24 Identities=33% Similarity=0.704 Sum_probs=20.1
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
++|++.|-||+||||++..+.-.+
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~L 25 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAAL 25 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 578888999999999887766665
No 261
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.06 E-value=4.3 Score=44.32 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=39.5
Q ss_pred CceechhHHHHHHHHHHhcCCce-EEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVG-IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~-~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++.+..++..+.+. .+=++|..|+||||+|+.+...+
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l 62 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAV 62 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999999887764 34689999999999999988776
No 262
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=73.96 E-value=4 Score=35.74 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=21.8
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+|=+.|..|.||||+|+.+...+
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 467788999999999999999988
No 263
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=73.93 E-value=3 Score=34.35 Aligned_cols=21 Identities=33% Similarity=0.635 Sum_probs=19.1
Q ss_pred EEEEecCCCchhHHHHHHHHh
Q 007656 182 IGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~ 202 (594)
|++.|..|.||||+...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999998874
No 264
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=73.87 E-value=3.3 Score=39.41 Aligned_cols=24 Identities=33% Similarity=0.729 Sum_probs=20.7
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+.|+|+|-||+||+|.+..+.-.+
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaal 24 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAAL 24 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEcCCCcccChhhhHHHHHH
Confidence 468999999999999988776665
No 265
>PRK13949 shikimate kinase; Provisional
Probab=73.84 E-value=3.1 Score=37.20 Aligned_cols=23 Identities=39% Similarity=0.416 Sum_probs=21.0
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-|.++|+.|.||||+++.+....
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998887
No 266
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=73.83 E-value=3.1 Score=36.22 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=19.8
Q ss_pred EEEEecCCCchhHHHHHHHHhh
Q 007656 182 IGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~~ 203 (594)
|.++|+.|.||||+++.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6789999999999999998776
No 267
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=73.74 E-value=3.1 Score=38.21 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=20.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHHh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
=.++.|.|..|.||||+++.+..-
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457889999999999999987653
No 268
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=73.73 E-value=4.5 Score=43.72 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=40.7
Q ss_pred CceechhHHHHHHHHHHhcCCceE-EEEEecCCCchhHHHHHHHHhhc
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGI-IGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~-i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
.+++|.+..+..+..++..+++.. +=++|..|.||||+|+.+...+.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 468999999999999999887654 66899999999999999888773
No 269
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=73.70 E-value=2.7 Score=40.83 Aligned_cols=24 Identities=33% Similarity=0.710 Sum_probs=20.2
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
++|++.|-||+||||++..+.-.+
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~L 25 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAAL 25 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHH
Confidence 578888999999999887766666
No 270
>CHL00095 clpC Clp protease ATP binding subunit
Probab=73.51 E-value=1e+02 Score=35.44 Aligned_cols=47 Identities=23% Similarity=0.376 Sum_probs=38.2
Q ss_pred CceechhHHHHHHHHHHhcC---------CceEEEEEecCCCchhHHHHHHHHhhc
Q 007656 158 PTIVGLQSQLEQVWRCLVEE---------SVGIIGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~---------~~~~i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
..++|.+..++.|.+.+... .+..+-++|..|+|||++|+.+....+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~ 564 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF 564 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 56899999999998888531 244566899999999999999988763
No 271
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=73.43 E-value=2.5 Score=39.44 Aligned_cols=24 Identities=46% Similarity=0.513 Sum_probs=20.6
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.-|.++|.+|+||||++..+..+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 467899999999999998877765
No 272
>PRK06893 DNA replication initiation factor; Validated
Probab=73.41 E-value=9.9 Score=35.87 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=22.8
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
....+-++|..|+|||+|++.+.+..
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34567899999999999999999987
No 273
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=73.34 E-value=3 Score=37.87 Aligned_cols=23 Identities=35% Similarity=0.558 Sum_probs=20.3
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+.|.|..|.||||+++.+....
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 67899999999999999996654
No 274
>PLN02796 D-glycerate 3-kinase
Probab=73.11 E-value=3.3 Score=41.30 Aligned_cols=26 Identities=35% Similarity=0.439 Sum_probs=23.5
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..-+|+|.|..|.||||+++.+...+
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHh
Confidence 45789999999999999999998877
No 275
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=72.72 E-value=5 Score=35.86 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=24.9
Q ss_pred HHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHh
Q 007656 168 EQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 168 ~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
+.+.+++.......|.++|.+|+||||+...+...
T Consensus 4 ~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~ 38 (174)
T cd04153 4 SSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLG 38 (174)
T ss_pred hHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccC
Confidence 34555554334456789999999999998776543
No 276
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=72.72 E-value=3 Score=36.61 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=19.2
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.|.++|.+|+||||++..+....
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999988877543
No 277
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=72.56 E-value=3.7 Score=34.45 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=19.8
Q ss_pred EEEEecCCCchhHHHHHHHHhh
Q 007656 182 IGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~~ 203 (594)
|=++|..|.||||+++.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 3478999999999999999987
No 278
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=72.51 E-value=3.1 Score=36.19 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.3
Q ss_pred EEEEecCCCchhHHHHHHHHhh
Q 007656 182 IGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+-+.|..|.||||+|+.+....
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 5688999999999999987764
No 279
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=72.39 E-value=8.2 Score=41.57 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=37.4
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++.+...+......-+=|+|-.|.|||++|+.+++..
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999888888887766555556689999999999999998753
No 280
>PLN02348 phosphoribulokinase
Probab=72.34 E-value=4.2 Score=41.27 Aligned_cols=27 Identities=30% Similarity=0.597 Sum_probs=25.2
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 177 ~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+...+|||.|-.|.||||+++.+.+.+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999999887
No 281
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=72.28 E-value=3.2 Score=39.56 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=22.3
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+..-.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4678999999999999999988866
No 282
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=72.09 E-value=3.1 Score=40.58 Aligned_cols=24 Identities=33% Similarity=0.638 Sum_probs=19.8
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
++|+|.|-||+||||.+..+.-.+
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~L 26 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAM 26 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Confidence 688899999999999887665555
No 283
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=72.05 E-value=3.9 Score=33.19 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.1
Q ss_pred ceEEEEEecCCCchhHHHHHHH
Q 007656 179 VGIIGLYGMGGVGKTTLLTHIN 200 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~ 200 (594)
-..+.|.|..|.||||+++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3578999999999999998865
No 284
>PRK13695 putative NTPase; Provisional
Probab=71.98 E-value=3.6 Score=36.86 Aligned_cols=23 Identities=48% Similarity=0.673 Sum_probs=20.7
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+.+.|..|.||||+++.+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998876
No 285
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=71.98 E-value=3.9 Score=36.65 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.5
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..|.+.|+.|.||||+++.+....
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 458899999999999999998876
No 286
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=71.96 E-value=4.6 Score=37.05 Aligned_cols=24 Identities=38% Similarity=0.652 Sum_probs=19.1
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+++.++|..|+||||.+-.+....
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHH
Confidence 689999999999999765555544
No 287
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=71.92 E-value=3 Score=40.70 Aligned_cols=24 Identities=29% Similarity=0.595 Sum_probs=19.7
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
++|++.|=||+||||.+-.+.-.+
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~L 25 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGL 25 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHH
Confidence 578999999999999877665555
No 288
>PRK13946 shikimate kinase; Provisional
Probab=71.86 E-value=3.6 Score=37.32 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.8
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+.|.+.|+.|.||||+++.+...+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468899999999999999999887
No 289
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=71.80 E-value=4.3 Score=37.26 Aligned_cols=25 Identities=32% Similarity=0.313 Sum_probs=22.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..+|-|.|..|.||||+++.+....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578899999999999999888875
No 290
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=71.62 E-value=2.8 Score=41.61 Aligned_cols=24 Identities=42% Similarity=0.544 Sum_probs=18.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHHh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
.+++-+.|.||+||||+|-...-.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~ 25 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVK 25 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHH
Confidence 467888999999999998764333
No 291
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=71.61 E-value=4.9 Score=42.67 Aligned_cols=46 Identities=33% Similarity=0.434 Sum_probs=37.3
Q ss_pred CceechhHHHHHHHHHHhc-------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~-------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++.|.+..++++.+.+.- ...+-+=++|..|.|||++++.+.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh
Confidence 4577899999988887632 134567789999999999999999987
No 292
>PRK04182 cytidylate kinase; Provisional
Probab=71.42 E-value=3.9 Score=36.68 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=21.3
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+|.|.|+.|.||||+++.+....
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998876
No 293
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=71.40 E-value=4.2 Score=37.38 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCchhHHHHHHHH
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINN 201 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~ 201 (594)
..+||+.|+-|.||||.++..-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999988766
No 294
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=71.34 E-value=3.3 Score=37.38 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.4
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+|-|.|..|.||||+++.+....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999988876
No 295
>PRK00698 tmk thymidylate kinase; Validated
Probab=71.28 E-value=4.2 Score=37.45 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.9
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..|.|.|..|.||||+++.+.+..
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998876
No 296
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=71.27 E-value=3.2 Score=40.26 Aligned_cols=23 Identities=39% Similarity=0.863 Sum_probs=18.6
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+|++.|-||+||||++-.+.-.+
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~L 24 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAF 24 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHH
Confidence 57888999999999877665555
No 297
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=71.22 E-value=7.4 Score=38.92 Aligned_cols=39 Identities=23% Similarity=0.442 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhc---CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 165 SQLEQVWRCLVE---ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 165 ~~~~~i~~~L~~---~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...+.+.+.+.+ +...+|++.|-.|.||||+.+.+....
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445666777765 478999999999999999999999888
No 298
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=71.16 E-value=6.3 Score=40.43 Aligned_cols=46 Identities=24% Similarity=0.258 Sum_probs=37.6
Q ss_pred CceechhHHHHHHHHHHhcC--------------CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEE--------------SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~--------------~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++|.+..++.+.-.+... ..+.|-++|..|.|||++|+.+....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999998888777642 23567799999999999999998877
No 299
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=71.12 E-value=7.5 Score=34.10 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=28.9
Q ss_pred echhHHHHHHHHHHhc---CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 161 VGLQSQLEQVWRCLVE---ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 161 vG~~~~~~~i~~~L~~---~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.|.+.-++.+.+.+.. ..-..+.++|+.|+||+|+...+....
T Consensus 81 ~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~ 126 (157)
T cd01858 81 FGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKK 126 (157)
T ss_pred ccHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCC
Confidence 4555555555554421 234567899999999999998887643
No 300
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.03 E-value=6.5 Score=41.71 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=39.4
Q ss_pred CceechhHHHHHHHHHHhcCCceE-EEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGI-IGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~-i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+.....+..++..+.+.. +=++|..|+||||+|+.+...+
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L 62 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVL 62 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457999999999999998876654 4579999999999999988876
No 301
>PRK13768 GTPase; Provisional
Probab=70.98 E-value=3.6 Score=39.53 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++.+.|.||+||||++..+....
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHH
Confidence 3578899999999999988777665
No 302
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=70.70 E-value=3.3 Score=36.66 Aligned_cols=22 Identities=27% Similarity=0.611 Sum_probs=19.3
Q ss_pred EEEEecCCCchhHHHHHHHHhh
Q 007656 182 IGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~~ 203 (594)
|.+.|..|.||||+++.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4588999999999999988876
No 303
>PRK08939 primosomal protein DnaI; Reviewed
Probab=70.68 E-value=68 Score=31.75 Aligned_cols=43 Identities=35% Similarity=0.358 Sum_probs=31.6
Q ss_pred chhHHHHHHHHHHhc----CCceEEEEEecCCCchhHHHHHHHHhhc
Q 007656 162 GLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 162 G~~~~~~~i~~~L~~----~~~~~i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
++...+..+.+++.. ....-+-++|-.|+|||.|+..+.+...
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 444445555566653 1345678999999999999999999983
No 304
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=70.48 E-value=3.8 Score=38.33 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+..-.
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3578999999999999999988765
No 305
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=70.47 E-value=4.3 Score=39.75 Aligned_cols=26 Identities=46% Similarity=0.740 Sum_probs=21.8
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.-.++.++|..|+||||++..+....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999888776655
No 306
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=70.45 E-value=4.1 Score=36.63 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.6
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++.+.|..|.||||+++.+....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 468899999999999999998876
No 307
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=70.38 E-value=3.4 Score=40.77 Aligned_cols=24 Identities=38% Similarity=0.706 Sum_probs=20.5
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
++|+|.|-||+||||++..+.-.+
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~L 24 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHMM 24 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999988777766
No 308
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=70.33 E-value=3.9 Score=35.60 Aligned_cols=23 Identities=35% Similarity=0.722 Sum_probs=19.8
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
++++.|.+|.||||++..+....
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~ 23 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITAL 23 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH
Confidence 37899999999999988887665
No 309
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=70.32 E-value=3.7 Score=39.73 Aligned_cols=24 Identities=33% Similarity=0.791 Sum_probs=20.4
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
++|+|.|-||+||||++..+.-..
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~L 26 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAY 26 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 678999999999999987766655
No 310
>PRK08181 transposase; Validated
Probab=70.16 E-value=1.1e+02 Score=29.67 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=24.2
Q ss_pred HHHhcCCceEEEEEecCCCchhHHHHHHHHhhc
Q 007656 172 RCLVEESVGIIGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 172 ~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
+|+.. -.-+-++|..|.|||.|+..+.+...
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~ 131 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLALI 131 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHHH
Confidence 45543 23478999999999999999988773
No 311
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=70.11 E-value=4.7 Score=33.40 Aligned_cols=22 Identities=41% Similarity=0.682 Sum_probs=19.8
Q ss_pred EEEEecCCCchhHHHHHHHHhh
Q 007656 182 IGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~~ 203 (594)
|.+.|.||.||||++..+...+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l 23 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYL 23 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999888876
No 312
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=69.95 E-value=4.5 Score=35.96 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=21.0
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+|.|.|..|.||||+++.+.+..
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998765
No 313
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=69.88 E-value=3.9 Score=37.95 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=22.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+....
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999988765
No 314
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=69.79 E-value=3.5 Score=34.62 Aligned_cols=27 Identities=37% Similarity=0.543 Sum_probs=18.3
Q ss_pred EEEEecCCCchhHHHHHHHHhhccCCCCCc
Q 007656 182 IGLYGMGGVGKTTLLTHINNKFLESPTNFD 211 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~~~~~~~~f~ 211 (594)
+=++|..|+||||+++.+.... ...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCcee
Confidence 4478999999999999999887 45564
No 315
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=69.77 E-value=5.2 Score=39.78 Aligned_cols=40 Identities=20% Similarity=0.305 Sum_probs=32.7
Q ss_pred chhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHH
Q 007656 162 GLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINN 201 (594)
Q Consensus 162 G~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~ 201 (594)
++..+-.-.++.|.++++..+++.|-.|.|||-||-+..-
T Consensus 228 prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgl 267 (436)
T COG1875 228 PRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGL 267 (436)
T ss_pred cccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHH
Confidence 3456666778889999999999999999999998765443
No 316
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=69.75 E-value=4 Score=36.68 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.4
Q ss_pred ceEEEEEecCCCchhHHHHHHH
Q 007656 179 VGIIGLYGMGGVGKTTLLTHIN 200 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~ 200 (594)
=.++++.|-.|.|||||++.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999875
No 317
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=69.75 E-value=4.2 Score=36.61 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=20.2
Q ss_pred EEEEecCCCchhHHHHHHHHhh
Q 007656 182 IGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~~ 203 (594)
|-|.|..|.||+|+|+.+.+..
T Consensus 3 iiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6689999999999999999986
No 318
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=69.73 E-value=3.7 Score=39.84 Aligned_cols=23 Identities=30% Similarity=0.778 Sum_probs=19.0
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+|++.|-||+||||++..+.-.+
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~l 24 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVAL 24 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHH
Confidence 68888999999999877666655
No 319
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=69.72 E-value=6.6 Score=36.16 Aligned_cols=27 Identities=22% Similarity=0.397 Sum_probs=22.6
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 177 ~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+....|+|.|.+|+||||+.+.+.+..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 346789999999999999998877753
No 320
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=69.65 E-value=6.8 Score=42.92 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=40.2
Q ss_pred CceechhHHHHHHHHHHhcCCc-eEEEEEecCCCchhHHHHHHHHhhc
Q 007656 158 PTIVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~-~~i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
.+++|.+..+..+..++..+.+ ..+=++|..|+||||+|+.+...+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc
Confidence 4579999999999999988764 4666899999999999999988874
No 321
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=69.55 E-value=4.1 Score=36.00 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=17.1
Q ss_pred EEEEecCCCchhHHHHHHHHh
Q 007656 182 IGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~ 202 (594)
|.|.|-.|.|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999988876
No 322
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=69.26 E-value=4.6 Score=41.13 Aligned_cols=26 Identities=46% Similarity=0.625 Sum_probs=22.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++|+++|.+|+||||++..+....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 34799999999999999988887665
No 323
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=69.26 E-value=4.4 Score=37.78 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=22.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.=.+++|.|..|.|||||++.+..-.
T Consensus 29 ~GE~VaiIG~SGaGKSTLLR~lngl~ 54 (258)
T COG3638 29 QGEMVAIIGPSGAGKSTLLRSLNGLV 54 (258)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccc
Confidence 34579999999999999999987744
No 324
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=68.91 E-value=6.3 Score=34.97 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=21.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
+-..+.++|..|.||||+++.+.+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 4456899999999999999988765
No 325
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.88 E-value=6.7 Score=40.32 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=25.6
Q ss_pred HHHHHHhcCCceEEEEEecCCCchhH-HHHHHHHhh
Q 007656 169 QVWRCLVEESVGIIGLYGMGGVGKTT-LLTHINNKF 203 (594)
Q Consensus 169 ~i~~~L~~~~~~~i~i~G~gG~gKtt-l~~~~~~~~ 203 (594)
.|++.=.+.+..+|+++|..|+||+| ||+..|=-.
T Consensus 368 dI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLl 403 (587)
T KOG0781|consen 368 DIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLL 403 (587)
T ss_pred HHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHH
Confidence 33333344689999999999999988 676665444
No 326
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=68.86 E-value=9.5 Score=39.23 Aligned_cols=46 Identities=24% Similarity=0.247 Sum_probs=38.1
Q ss_pred CceechhHHHHHHHHHHhcC--------------CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEE--------------SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~--------------~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++|.+..++.+..++... ....|-+.|..|+||||+|+.+....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999888541 13677899999999999999988876
No 327
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=68.81 E-value=4.5 Score=34.68 Aligned_cols=22 Identities=50% Similarity=0.739 Sum_probs=19.8
Q ss_pred EEEEecCCCchhHHHHHHHHhh
Q 007656 182 IGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+.|+|..|.||||+++.+....
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 6789999999999999988765
No 328
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=68.77 E-value=4.3 Score=36.96 Aligned_cols=24 Identities=42% Similarity=0.778 Sum_probs=21.3
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.|-.|.|||||++.+....
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999987754
No 329
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=68.67 E-value=4.5 Score=36.42 Aligned_cols=26 Identities=38% Similarity=0.478 Sum_probs=22.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.=.+++|.|..|.|||||++.+....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999987654
No 330
>PRK07933 thymidylate kinase; Validated
Probab=68.64 E-value=5 Score=37.38 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=21.6
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.|.|.|+.|.||||+++.+.+.+
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L 24 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAAL 24 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999988
No 331
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=68.64 E-value=4.3 Score=37.89 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+..-.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999988765
No 332
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=68.63 E-value=4.1 Score=37.19 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.2
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+|.|.|+-|.||||+++.+.+..
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~ 23 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHL 23 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999988764
No 333
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=68.63 E-value=4.3 Score=38.72 Aligned_cols=26 Identities=35% Similarity=0.336 Sum_probs=22.4
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.-.++|++|-.|.||||+++.+-.-.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~ 63 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE 63 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc
Confidence 45679999999999999999887755
No 334
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=68.54 E-value=4.5 Score=35.23 Aligned_cols=23 Identities=35% Similarity=0.650 Sum_probs=20.3
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
++-+.|..|.||||+++.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999988876
No 335
>PRK09087 hypothetical protein; Validated
Probab=68.52 E-value=12 Score=35.31 Aligned_cols=26 Identities=31% Similarity=0.295 Sum_probs=21.7
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.-..+-|+|..|.|||+|++......
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc
Confidence 34568999999999999999877654
No 336
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=68.51 E-value=4.7 Score=36.75 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=23.7
Q ss_pred hcCCceEEEEEecCCCchhHHHHHHHHh
Q 007656 175 VEESVGIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 175 ~~~~~~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
..+....|+++|..|.||||++..+.+.
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3456778999999999999999988764
No 337
>PRK14974 cell division protein FtsY; Provisional
Probab=68.50 E-value=9.5 Score=38.24 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=21.9
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...++.++|..|+||||.+..+....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46899999999999999777766655
No 338
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=68.49 E-value=8.5 Score=37.69 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=30.9
Q ss_pred ceechhHHHHHHHHHHh---cC------C------ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 159 TIVGLQSQLEQVWRCLV---EE------S------VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 159 ~~vG~~~~~~~i~~~L~---~~------~------~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++|.+..+++|.+... .. . -.-+-++|..|.||||+|+.+....
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 46888777776655421 10 1 1246689999999999998877765
No 339
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=68.35 E-value=4.2 Score=40.27 Aligned_cols=24 Identities=38% Similarity=0.510 Sum_probs=19.3
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+++-+.|-||+||||+|-...-..
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~ 25 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALAL 25 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHH
Confidence 567789999999999986655554
No 340
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=68.34 E-value=5.3 Score=37.96 Aligned_cols=26 Identities=38% Similarity=0.594 Sum_probs=22.7
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+..+|-++||.|.||||..+.++...
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHH
Confidence 45567789999999999999999987
No 341
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=68.17 E-value=4.6 Score=36.36 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=22.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.=.+++|.|-.|.|||||++.+..-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 44589999999999999999987755
No 342
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.09 E-value=7.3 Score=42.43 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=40.2
Q ss_pred CceechhHHHHHHHHHHhcCCceE-EEEEecCCCchhHHHHHHHHhhc
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGI-IGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~-i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
.+++|.+.....+.+++..+++.. +=++|..|+||||+|+.+.+.+.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 468999999999999998887654 46899999999999999888763
No 343
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=68.06 E-value=3.9 Score=36.21 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=19.3
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.|.++|.+|+||||++..+.+..
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~ 24 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKK 24 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999998876653
No 344
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=67.99 E-value=4.4 Score=35.60 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=18.6
Q ss_pred EEEEEecCCCchhHHHHHHHHh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~ 202 (594)
.|.++|-+|+||||++..+.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4678999999999999887654
No 345
>PF11868 DUF3388: Protein of unknown function (DUF3388); InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised. Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.
Probab=67.96 E-value=7.6 Score=33.61 Aligned_cols=29 Identities=34% Similarity=0.458 Sum_probs=23.5
Q ss_pred HHHHHHHHhcCCceEEEEEecCCCchhHH
Q 007656 167 LEQVWRCLVEESVGIIGLYGMGGVGKTTL 195 (594)
Q Consensus 167 ~~~i~~~L~~~~~~~i~i~G~gG~gKttl 195 (594)
.+-+-+.+..++-.+|||-||.-+|||.-
T Consensus 42 VDFmaEl~K~~Gh~lIGiRGmPRVGKTEs 70 (192)
T PF11868_consen 42 VDFMAELFKEEGHKLIGIRGMPRVGKTES 70 (192)
T ss_pred HHHHHHHHHhcCceEEeecCCCccCchhH
Confidence 34455566778999999999999999974
No 346
>PRK10536 hypothetical protein; Provisional
Probab=67.94 E-value=9.9 Score=36.30 Aligned_cols=43 Identities=16% Similarity=0.189 Sum_probs=35.0
Q ss_pred ceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 159 TIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 159 ~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+.++.......+.++.+.. .+-+.|..|.|||++|.....+.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~--lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQ--LIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred cccCCCHHHHHHHHHHhcCC--eEEEECCCCCCHHHHHHHHHHHH
Confidence 35677778888888887654 88889999999999999888764
No 347
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=67.91 E-value=5.6 Score=36.35 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.9
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..|.|.|..|.||||+++.+....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999887
No 348
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=67.84 E-value=0.16 Score=53.33 Aligned_cols=108 Identities=25% Similarity=0.233 Sum_probs=59.8
Q ss_pred cccccccccccccccCch----hhcCCCcccEEEccCCcCccccc-----CchHHhhhhcCcEEEccCCccc-----ccc
Q 007656 222 LHTLFLASNNSLQRITDG----FFQLMPSLKVLKMSNCWNFTLKL-----PLAMSELGSSLELLDISYASIT-----ELP 287 (594)
Q Consensus 222 L~~L~L~~~~~l~~l~~~----~~~~l~~L~~L~L~~~~~l~~~l-----p~~i~~l~~~L~~L~ls~~~l~-----~lp 287 (594)
+..|.| .++.+..-... ++...+.|..|++++| .+ +.. -..+......|++|++..|.++ .+.
T Consensus 89 l~~L~L-~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n-~l-~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~ 165 (478)
T KOG4308|consen 89 LLHLSL-ANNRLGDRGAEELAQALKTLPTLGQLDLSGN-NL-GDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLA 165 (478)
T ss_pred HHHhhh-hhCccccchHHHHHHHhcccccHhHhhcccC-CC-ccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHH
Confidence 666666 44444332222 2566778888888888 76 411 1111121115667777777665 334
Q ss_pred hhhhccCcCcEEecCCCCCCCC-----cchh---hhcCCCCCcEEEecCCCCCc
Q 007656 288 EELKLLVNLKCLNLRWTDTLNK-----IPRQ---LISILSWLRVLRMLGTGWFN 333 (594)
Q Consensus 288 ~~i~~L~~L~~L~L~~~~~l~~-----lp~~---~~~~L~~L~~L~l~~~~~~~ 333 (594)
..+.....|+.++++.|. +.. ++.. .+....++++|++.+|....
T Consensus 166 ~~L~~~~~l~~l~l~~n~-l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~ 218 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLNG-LIELGLLVLSQALESAASPLSSLETLKLSRCGVTS 218 (478)
T ss_pred HHHhcccchhHHHHHhcc-cchhhhHHHhhhhhhhhcccccHHHHhhhhcCcCh
Confidence 456667778888887773 321 1111 12246677788888777653
No 349
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=67.82 E-value=4.8 Score=37.55 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=21.3
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=-.++|.|..|.|||||+..+..-.
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3578999999999999998877654
No 350
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=67.82 E-value=8.5 Score=38.25 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=23.8
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 177 ~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+.-..|.+.|+.|.||||+++.+....
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998876
No 351
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=67.81 E-value=5.2 Score=35.69 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.2
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+.|-++|+.|.||||+++.+....
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 357789999999999999999876
No 352
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=67.76 E-value=4.5 Score=39.27 Aligned_cols=24 Identities=33% Similarity=0.780 Sum_probs=19.8
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
++|++.|-||+||||++-.+.-.+
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~l 26 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAF 26 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 678888999999999877666655
No 353
>PRK06761 hypothetical protein; Provisional
Probab=67.70 E-value=5.1 Score=38.95 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=22.2
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+|.|.|..|.||||+++.+....
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 478899999999999999999987
No 354
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=67.68 E-value=4.5 Score=37.91 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.8
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+|.|-|+-|.||||+++.+....
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l 23 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKL 23 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 355
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=67.62 E-value=4.3 Score=36.61 Aligned_cols=21 Identities=43% Similarity=0.604 Sum_probs=19.0
Q ss_pred EEEEEecCCCchhHHHHHHHH
Q 007656 181 IIGLYGMGGVGKTTLLTHINN 201 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~ 201 (594)
+|+|.|..|.||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998876
No 356
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=67.61 E-value=7.7 Score=42.91 Aligned_cols=47 Identities=19% Similarity=0.252 Sum_probs=39.7
Q ss_pred CceechhHHHHHHHHHHhcCCceE-EEEEecCCCchhHHHHHHHHhhc
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGI-IGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~-i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
.+++|.+.....+..++..+++.. +=++|..|+||||+|+.+...+.
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~Ln 65 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALN 65 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 457999999999999998887654 45799999999999999887763
No 357
>PRK14530 adenylate kinase; Provisional
Probab=67.53 E-value=5.2 Score=37.32 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.7
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.|.|.|..|.||||+++.+....
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998776
No 358
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=67.52 E-value=10 Score=37.88 Aligned_cols=36 Identities=25% Similarity=0.494 Sum_probs=28.7
Q ss_pred HHHHHHHh--cCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 168 EQVWRCLV--EESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 168 ~~i~~~L~--~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..+++.+. .....+|+|.|..|.||||++..+....
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555554 3578899999999999999998877766
No 359
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=67.43 E-value=2.5 Score=23.59 Aligned_cols=10 Identities=40% Similarity=0.587 Sum_probs=3.6
Q ss_pred cccEEEccCC
Q 007656 246 SLKVLKMSNC 255 (594)
Q Consensus 246 ~L~~L~L~~~ 255 (594)
+|++|+|++|
T Consensus 3 ~L~~L~l~~n 12 (24)
T PF13516_consen 3 NLETLDLSNN 12 (24)
T ss_dssp T-SEEE-TSS
T ss_pred CCCEEEccCC
Confidence 3444444444
No 360
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=67.43 E-value=3.9 Score=35.41 Aligned_cols=21 Identities=43% Similarity=0.567 Sum_probs=18.5
Q ss_pred EEEEecCCCchhHHHHHHHHh
Q 007656 182 IGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~ 202 (594)
|+++|..|+||||+.+.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999887665
No 361
>PRK13948 shikimate kinase; Provisional
Probab=67.39 E-value=5.4 Score=36.08 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.8
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..+.|.+.||-|.||||+++.+....
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 34678899999999999999998876
No 362
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=67.38 E-value=9 Score=34.86 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=30.8
Q ss_pred echhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 161 VGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 161 vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.|.++-++.+.+.+.. -..+.++|..|+||+|+...+.+..
T Consensus 111 ~gi~eL~~~l~~~l~~--~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 111 WGVEELINAIKKLAKK--GGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CCHHHHHHHHHHHhhc--CCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 5666666666666542 3468899999999999998888764
No 363
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=67.31 E-value=4.8 Score=37.33 Aligned_cols=25 Identities=40% Similarity=0.506 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+....
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999988764
No 364
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=67.18 E-value=13 Score=35.42 Aligned_cols=38 Identities=24% Similarity=0.453 Sum_probs=28.9
Q ss_pred HHHHHHHHHhc--CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 166 QLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 166 ~~~~i~~~L~~--~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...++++.+.. .+..+|||.|.+|.||+||...+-...
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 45566666654 478999999999999999998877776
No 365
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=67.18 E-value=4.9 Score=37.85 Aligned_cols=25 Identities=40% Similarity=0.477 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+..-.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3579999999999999999988764
No 366
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=67.14 E-value=6.3 Score=38.28 Aligned_cols=26 Identities=38% Similarity=0.640 Sum_probs=21.9
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..+++.++|.+|+||||.+..+....
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999877776655
No 367
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=67.11 E-value=11 Score=37.70 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=41.3
Q ss_pred CceechhHHHHHHHHHHhc------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++|+++.++++++.+.. ..-+++=+.|.-|-||+|++..+.+-+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999966 367889999999999999999988887
No 368
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=67.09 E-value=4.3 Score=39.45 Aligned_cols=23 Identities=43% Similarity=0.784 Sum_probs=20.8
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+++|.|-.|.||||+++.+...+
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhh
Confidence 58999999999999999988766
No 369
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=67.08 E-value=23 Score=33.14 Aligned_cols=44 Identities=25% Similarity=0.398 Sum_probs=34.2
Q ss_pred eechhHHHHHHHHHHhcCCc-eEEEEEecCCCchhHHHHHHHHhh
Q 007656 160 IVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 160 ~vG~~~~~~~i~~~L~~~~~-~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.||+|...+++-..++.-+. --|-++|-.|+||+|+...++...
T Consensus 26 yvGidtI~~Qm~~k~mk~GF~FNIMVVgqSglgkstlinTlf~s~ 70 (336)
T KOG1547|consen 26 YVGIDTIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTLINTLFKSH 70 (336)
T ss_pred cccHHHHHHHHHHHHHhccCceEEEEEecCCCCchhhHHHHHHHH
Confidence 49999999999988876422 224467999999999998877754
No 370
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=67.04 E-value=5.3 Score=37.19 Aligned_cols=26 Identities=35% Similarity=0.625 Sum_probs=23.2
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 177 ~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.. .+++|.|..|.|||||++.+....
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 46 899999999999999999988765
No 371
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=67.03 E-value=4.6 Score=35.49 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=18.7
Q ss_pred EEEEecCCCchhHHHHHHHHhh
Q 007656 182 IGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~~ 203 (594)
|.++|.+|+||||++..+.+..
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6789999999999998876654
No 372
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=66.99 E-value=4.6 Score=35.37 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=18.7
Q ss_pred EEEEecCCCchhHHHHHHHHhh
Q 007656 182 IGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~~ 203 (594)
|.++|.+|+||||+++.+.+..
T Consensus 3 i~v~G~~~vGKTsli~~l~~~~ 24 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVENK 24 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6789999999999998876544
No 373
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=66.91 E-value=5.7 Score=40.95 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=26.2
Q ss_pred HhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 174 LVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 174 L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+..-++.|+|.|..|.|||||++.+....
T Consensus 214 vr~~~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 214 VRPFFVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred HhhCCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 345678999999999999999999988875
No 374
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=66.90 E-value=1.2e+02 Score=28.81 Aligned_cols=46 Identities=28% Similarity=0.359 Sum_probs=37.1
Q ss_pred CceechhHHHHHHHHHHhc-------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~-------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++-|.|-++.+|-+...- +..+-+-++|..|.|||-|++.+.|+-
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 4567888888887776532 466778899999999999999999976
No 375
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=66.86 E-value=8.2 Score=41.24 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=40.1
Q ss_pred CceechhHHHHHHHHHHhcCCceE-EEEEecCCCchhHHHHHHHHhhc
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGI-IGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~-i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
.+++|.+...+.+...+..+++.. .=++|..|.||||+|+.+...+.
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~ 61 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALV 61 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence 458999999999999998887764 46899999999999998887763
No 376
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=66.85 E-value=4.4 Score=35.48 Aligned_cols=20 Identities=35% Similarity=0.664 Sum_probs=18.0
Q ss_pred EEEEecCCCchhHHHHHHHH
Q 007656 182 IGLYGMGGVGKTTLLTHINN 201 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~ 201 (594)
|+++|..|.|||||...+.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 68999999999999998873
No 377
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=66.79 E-value=5 Score=37.34 Aligned_cols=25 Identities=40% Similarity=0.457 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+..-.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999988754
No 378
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=66.76 E-value=4.8 Score=34.79 Aligned_cols=22 Identities=45% Similarity=0.542 Sum_probs=19.3
Q ss_pred EEEEecCCCchhHHHHHHHHhh
Q 007656 182 IGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~~ 203 (594)
|.++|..|+||||++..+.+..
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~ 24 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGK 24 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 6789999999999999887665
No 379
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=66.71 E-value=5 Score=37.58 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+..-.
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999988754
No 380
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=66.70 E-value=5 Score=37.35 Aligned_cols=25 Identities=36% Similarity=0.432 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+..-.
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999987654
No 381
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=66.52 E-value=5.8 Score=35.38 Aligned_cols=22 Identities=45% Similarity=0.609 Sum_probs=18.8
Q ss_pred EEEEecCCCchhHHHHHHHHhh
Q 007656 182 IGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~~ 203 (594)
|-|.|..|+||||+++.+....
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 5688999999999999988877
No 382
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=66.49 E-value=5 Score=38.02 Aligned_cols=24 Identities=38% Similarity=0.564 Sum_probs=21.4
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.|..|.|||||++.+..-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999988754
No 383
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=66.30 E-value=6.5 Score=37.97 Aligned_cols=25 Identities=48% Similarity=0.787 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=..++|+|-.|.|||||++.++++.
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i 93 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNI 93 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHH
Confidence 3568899999999999999999988
No 384
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=66.28 E-value=5.2 Score=37.70 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=22.5
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.=.+++|.|..|.|||||++.+..-.
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34689999999999999999998765
No 385
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=66.07 E-value=5.2 Score=37.41 Aligned_cols=25 Identities=40% Similarity=0.628 Sum_probs=22.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|-.|.|||||++.+..-.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999998765
No 386
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=66.05 E-value=5.4 Score=36.54 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.5
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.|-.|.|||||++.+....
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999988765
No 387
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=66.05 E-value=5.3 Score=37.40 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+....
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678999999999999999988754
No 388
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=66.04 E-value=4.7 Score=35.35 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=19.1
Q ss_pred EEEEecCCCchhHHHHHHHHhh
Q 007656 182 IGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~~ 203 (594)
|.++|..|+||||+++.+.+..
T Consensus 3 v~v~G~~~~GKTtli~~l~~~~ 24 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDGK 24 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6789999999999998887654
No 389
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=66.04 E-value=5.3 Score=34.93 Aligned_cols=21 Identities=43% Similarity=0.550 Sum_probs=18.7
Q ss_pred EEEEEecCCCchhHHHHHHHH
Q 007656 181 IIGLYGMGGVGKTTLLTHINN 201 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~ 201 (594)
+|+++|..|+||||+...+.+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~ 22 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTG 22 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhC
Confidence 689999999999999988764
No 390
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=65.92 E-value=5.1 Score=37.28 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=21.6
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|-.|.|||||++.+....
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3578999999999999999987654
No 391
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=65.90 E-value=5.1 Score=34.93 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=18.3
Q ss_pred EEEEEecCCCchhHHHHHHHHh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~ 202 (594)
.|.+.|..|+||||++..+.+.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3678999999999998777654
No 392
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=65.81 E-value=5.3 Score=36.90 Aligned_cols=25 Identities=40% Similarity=0.482 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+..-.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999988765
No 393
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=65.71 E-value=5.6 Score=40.75 Aligned_cols=26 Identities=35% Similarity=0.485 Sum_probs=23.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..-+|||.|..|.||||+++.+..-.
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL 236 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLF 236 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999986655
No 394
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=65.69 E-value=6.2 Score=36.32 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.9
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++.|..|.||||+++.+....
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRAL 25 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 58999999999999999988876
No 395
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=65.68 E-value=5 Score=34.90 Aligned_cols=21 Identities=29% Similarity=0.582 Sum_probs=18.1
Q ss_pred EEEEecCCCchhHHHHHHHHh
Q 007656 182 IGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~ 202 (594)
|.++|..|+||||+...+.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999887654
No 396
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.66 E-value=8.5 Score=42.16 Aligned_cols=46 Identities=20% Similarity=0.271 Sum_probs=40.2
Q ss_pred CceechhHHHHHHHHHHhcCCceE-EEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGI-IGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~-i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+...+.+..++..+.+.. +=++|..|+||||+|..+...+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l 63 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTI 63 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999987765 6789999999999998887776
No 397
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=65.58 E-value=4.3 Score=23.41 Aligned_cols=14 Identities=43% Similarity=0.544 Sum_probs=7.1
Q ss_pred cCcEEEccCCcccc
Q 007656 272 SLELLDISYASITE 285 (594)
Q Consensus 272 ~L~~L~ls~~~l~~ 285 (594)
+|+.|+++.|+|+.
T Consensus 3 ~L~~L~L~~NkI~~ 16 (26)
T smart00365 3 NLEELDLSQNKIKK 16 (26)
T ss_pred ccCEEECCCCccce
Confidence 45555555554443
No 398
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=65.53 E-value=5.4 Score=38.15 Aligned_cols=24 Identities=33% Similarity=0.717 Sum_probs=21.4
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.|-.|.|||||++.+....
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999987765
No 399
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=65.49 E-value=5.5 Score=37.06 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|-.|.|||||++.+....
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999988754
No 400
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=65.48 E-value=6.9 Score=35.11 Aligned_cols=24 Identities=38% Similarity=0.437 Sum_probs=21.3
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..+-+.|..|+||+|+++.+..+.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 467789999999999999999875
No 401
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=65.46 E-value=4.9 Score=37.29 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=21.0
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+++|.|..|.|||||++.+..-.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999998754
No 402
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=65.39 E-value=4.8 Score=35.13 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=18.9
Q ss_pred EEEEecCCCchhHHHHHHHHhh
Q 007656 182 IGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~~ 203 (594)
|.++|..|+||||+...+.+..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~ 23 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGE 23 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC
Confidence 6789999999999998877653
No 403
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=65.32 E-value=5.4 Score=37.92 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+..-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3578999999999999999988654
No 404
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=65.30 E-value=5.6 Score=39.25 Aligned_cols=25 Identities=32% Similarity=0.587 Sum_probs=19.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++|+|.|-||+||||.+..+.-.+
T Consensus 4 ~~~iai~~KGGvGKTt~~~nLa~~l 28 (295)
T PRK13234 4 LRQIAFYGKGGIGKSTTSQNTLAAL 28 (295)
T ss_pred ceEEEEECCCCccHHHHHHHHHHHH
Confidence 5788888999999999876655545
No 405
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=65.23 E-value=5.4 Score=37.97 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|+|-.|.|||||++.+..-.
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3589999999999999999987654
No 406
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=65.12 E-value=5.4 Score=37.52 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+....
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 31 GETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999988765
No 407
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=65.10 E-value=5.2 Score=34.40 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=19.1
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-|.+.|..|.||||++..+....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999988776543
No 408
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=65.10 E-value=5.9 Score=34.68 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=18.6
Q ss_pred EEEEecCCCchhHHHHHHHHhh
Q 007656 182 IGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~~ 203 (594)
|.++|.+|+||||++....+..
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~ 23 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGE 23 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 6789999999999998876653
No 409
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=65.09 E-value=5.7 Score=36.69 Aligned_cols=24 Identities=33% Similarity=0.410 Sum_probs=21.5
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.|..|.|||||++.+....
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999988765
No 410
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=65.05 E-value=5.3 Score=34.13 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=18.0
Q ss_pred EEEEEecCCCchhHHHHHHHHh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~ 202 (594)
-|.++|.+|+|||||+..+...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~ 23 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGE 23 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 3789999999999998776543
No 411
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=65.03 E-value=5.5 Score=37.84 Aligned_cols=25 Identities=40% Similarity=0.472 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+..-.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999987754
No 412
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=64.99 E-value=8.8 Score=42.08 Aligned_cols=56 Identities=14% Similarity=0.302 Sum_probs=44.2
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhhccCCCCCceEEEee
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVP 217 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~~~~~~~f~~~~w~p 217 (594)
++++|.+..++.+...+.... .+-++|-.|.||||+++.+..... ...++...|.|
T Consensus 31 ~~vigq~~a~~~L~~~~~~~~--~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~ 86 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQRR--HVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYP 86 (637)
T ss_pred HHcCChHHHHHHHHHHHHhCC--eEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEee
Confidence 457899888888887777664 577899999999999999888762 34467778886
No 413
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=64.96 E-value=13 Score=34.20 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=25.4
Q ss_pred HHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 169 QVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 169 ~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+.+..+....-++..+.|..|.||||++..+....
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 33444434444567779999999999999887766
No 414
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=64.92 E-value=6.2 Score=34.41 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCchhHHHHHHHHh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
..+|++.|..|.||||++..+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999887543
No 415
>PRK06620 hypothetical protein; Validated
Probab=64.91 E-value=5.7 Score=37.06 Aligned_cols=24 Identities=25% Similarity=0.087 Sum_probs=20.7
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..+=++|..|+|||+|++.+.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 557899999999999999877654
No 416
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=64.89 E-value=5.9 Score=34.90 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=18.4
Q ss_pred EEEEecCCCchhHHHHHHHHhh
Q 007656 182 IGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~~ 203 (594)
|.++|..|+|||||...+....
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~ 23 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLF 23 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhc
Confidence 6789999999999988876543
No 417
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=64.89 E-value=6.2 Score=40.35 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-.+|+|+|..|.||||++..+....
T Consensus 5 ~~~i~i~G~~gsGKTTl~~~l~~~l 29 (369)
T PRK14490 5 PFEIAFCGYSGSGKTTLITALVRRL 29 (369)
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998887
No 418
>PRK15453 phosphoribulokinase; Provisional
Probab=64.84 E-value=7.5 Score=37.65 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=22.6
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...+|+|.|-.|.||||+++.+...+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999887655
No 419
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=64.84 E-value=9.1 Score=34.58 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=25.4
Q ss_pred HHHHHHHHhc-CCceEEEEEecCCCchhHHHHHHHHh
Q 007656 167 LEQVWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 167 ~~~i~~~L~~-~~~~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
+..+.+++.. ..-..|.++|..|+||||++..+...
T Consensus 4 ~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~ 40 (184)
T smart00178 4 FYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKND 40 (184)
T ss_pred HHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcC
Confidence 3455665532 44456779999999999998776543
No 420
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=64.82 E-value=5.5 Score=35.02 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=17.5
Q ss_pred EEEEecCCCchhHHHHHHHHh
Q 007656 182 IGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~ 202 (594)
|.++|..|+|||||+....+.
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999776554
No 421
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=64.73 E-value=5.8 Score=37.14 Aligned_cols=26 Identities=31% Similarity=0.426 Sum_probs=22.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.=.+++|.|..|.|||||++.+....
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999988765
No 422
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=64.71 E-value=5.7 Score=37.64 Aligned_cols=26 Identities=27% Similarity=0.542 Sum_probs=22.1
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.=.+++|.|..|.|||||++.+....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34589999999999999999987654
No 423
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=64.65 E-value=5.8 Score=36.96 Aligned_cols=25 Identities=32% Similarity=0.300 Sum_probs=22.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|-.|.||||+++.+..-.
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3678999999999999999988765
No 424
>PRK05642 DNA replication initiation factor; Validated
Probab=64.61 E-value=13 Score=35.26 Aligned_cols=25 Identities=36% Similarity=0.620 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...+-|+|-.|+|||.|++.+.+..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~ 69 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF 69 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999998876
No 425
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=64.55 E-value=13 Score=40.65 Aligned_cols=55 Identities=16% Similarity=0.311 Sum_probs=40.4
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhhccCCCCCceEEEe
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWV 216 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~~~~~~~f~~~~w~ 216 (594)
++++|.+..++.+...+.... . +-++|..|.||||+++.+..... ...|...+.+
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~-~-~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~ 72 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR-N-VLLIGEPGVGKSMLAKAMAELLP--DEELEDILVY 72 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC-C-EEEECCCCCCHHHHHHHHHHHcC--chhheeEEEE
Confidence 557899988887777777664 3 33899999999999999998772 2234444444
No 426
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.53 E-value=9.3 Score=41.53 Aligned_cols=47 Identities=23% Similarity=0.261 Sum_probs=39.4
Q ss_pred CceechhHHHHHHHHHHhcCCc-eEEEEEecCCCchhHHHHHHHHhhc
Q 007656 158 PTIVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~-~~i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
.+++|.+..+..+.+.+..+.+ ..+=++|..|+||||+|+.+.+.+.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence 4579999888888888888764 5666799999999999999888874
No 427
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=64.45 E-value=9 Score=34.62 Aligned_cols=31 Identities=39% Similarity=0.572 Sum_probs=25.9
Q ss_pred eEEEEEecCCCchhHHHHHHHHhhccCCCCCceE
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCV 213 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~~~~~~~f~~~ 213 (594)
+++-++|..|.||+|+++.+.... +..|...
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~ 33 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRV 33 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHS---TTTEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc---ccccccc
Confidence 578899999999999999999887 5667533
No 428
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=64.43 E-value=5.9 Score=36.58 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+....
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999988765
No 429
>PLN02318 phosphoribulokinase/uridine kinase
Probab=64.36 E-value=6.7 Score=42.11 Aligned_cols=28 Identities=25% Similarity=0.497 Sum_probs=24.8
Q ss_pred cCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 176 EESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 176 ~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++..+|+|.|-.|.||||+++.+....
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 3578999999999999999999988765
No 430
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=64.30 E-value=6.1 Score=37.84 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=19.7
Q ss_pred EEEEecCCCchhHHHHHHHHhh
Q 007656 182 IGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~~ 203 (594)
|-+.|+.|.||||+|+.+....
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 5689999999999999988776
No 431
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=64.29 E-value=12 Score=42.15 Aligned_cols=46 Identities=22% Similarity=0.357 Sum_probs=37.9
Q ss_pred CceechhHHHHHHHHHHhc---------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE---------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~---------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++|.+..++.|.+.+.. ..+..+-++|..|+|||++|+.+....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999988863 135677889999999999999988776
No 432
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=64.26 E-value=5.9 Score=37.46 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+..-.
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999988764
No 433
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=64.24 E-value=12 Score=34.29 Aligned_cols=44 Identities=23% Similarity=0.232 Sum_probs=33.5
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+|+|.+..+..+.-...+. .-+-+.|-.|.|||++|+.+-.-+
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhcCcHHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHHhC
Confidence 56899998888777777754 467789999999999999887654
No 434
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=64.24 E-value=6 Score=37.38 Aligned_cols=24 Identities=42% Similarity=0.577 Sum_probs=21.5
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.|-.|.|||||++.+..-.
T Consensus 12 e~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 12 EFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999988765
No 435
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=64.20 E-value=10 Score=41.16 Aligned_cols=46 Identities=15% Similarity=0.207 Sum_probs=39.1
Q ss_pred CceechhHHHHHHHHHHhcCCceE-EEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGI-IGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~-i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+.....+.+++..+++.. +=++|..|.||||+|+.+...+
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal 62 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAV 62 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 568999999999999998876554 4569999999999999887776
No 436
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=64.14 E-value=5.4 Score=35.27 Aligned_cols=21 Identities=48% Similarity=0.820 Sum_probs=18.5
Q ss_pred EEEEecCCCchhHHHHHHHHh
Q 007656 182 IGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~ 202 (594)
|+++|..|+||||+++.+.+.
T Consensus 3 v~ivG~~~~GKStl~~~l~~~ 23 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNA 23 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999887653
No 437
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=64.02 E-value=6.1 Score=36.72 Aligned_cols=25 Identities=36% Similarity=0.348 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+....
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999988765
No 438
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=63.97 E-value=6 Score=38.09 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+..-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999988754
No 439
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=63.96 E-value=5.7 Score=34.59 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=19.0
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-|.++|.+|+||||+...+.+..
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~ 24 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENK 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999987776653
No 440
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=63.90 E-value=5.6 Score=36.08 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=19.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHHh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
-..|.+.|.+|+||||++..+.+.
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 445699999999999999887654
No 441
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=63.88 E-value=11 Score=36.36 Aligned_cols=43 Identities=35% Similarity=0.497 Sum_probs=31.5
Q ss_pred echhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 161 VGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 161 vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.|......+.+..+....-.++-|.|..|.||||++..+...+
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 4655555555555555556688999999999999998876665
No 442
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=63.87 E-value=7.1 Score=39.62 Aligned_cols=34 Identities=47% Similarity=0.707 Sum_probs=28.3
Q ss_pred eEEEEEecCCCchhHHHHHHHHhhccCCCCCceE
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCV 213 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~~~~~~~f~~~ 213 (594)
+.-|++|..|.|||||++++.++...++.+.|..
T Consensus 291 RRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvL 324 (807)
T KOG0066|consen 291 RRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVL 324 (807)
T ss_pred ceecccCCCCCchHHHHHHHHhhhccCCCCCceE
Confidence 4457889999999999999999987777777743
No 443
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=63.87 E-value=11 Score=39.08 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=35.6
Q ss_pred CceechhHHHHHHHHHHhc-------C---------CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE-------E---------SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~-------~---------~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++|.+..++.+...+.+ . .-+.+-++|..|.|||++|+.+....
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999988888665522 0 12457799999999999999998766
No 444
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=63.84 E-value=9.4 Score=40.82 Aligned_cols=46 Identities=20% Similarity=0.248 Sum_probs=33.9
Q ss_pred CceechhHHHHHHHHHHh---c---------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLV---E---------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~---~---------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++++.+.+. . ...+-+=++|..|.|||++++.+.+..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc
Confidence 457898877766655443 2 123456689999999999999998876
No 445
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=63.78 E-value=5.8 Score=35.00 Aligned_cols=22 Identities=32% Similarity=0.655 Sum_probs=18.1
Q ss_pred EEEEEecCCCchhHHHHHHHHh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~ 202 (594)
.|.++|.+|+||||+.+...+.
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~ 24 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKG 24 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3679999999999999776543
No 446
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=63.73 E-value=11 Score=40.16 Aligned_cols=54 Identities=26% Similarity=0.420 Sum_probs=42.1
Q ss_pred CceechhHHHHHHHHHHhcC-----CceEEEEEecCCCchhHHHHHHHHhhccCCCCCceEEEe
Q 007656 158 PTIVGLQSQLEQVWRCLVEE-----SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWV 216 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~-----~~~~i~i~G~gG~gKttl~~~~~~~~~~~~~~f~~~~w~ 216 (594)
.+++-...-+++|..||... ..+++-+.|..|.||||.++.+.+.. .|+..-|.
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~ 77 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWI 77 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEec
Confidence 34555667888999999762 35789999999999999999998876 35666675
No 447
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=63.71 E-value=7.7 Score=35.09 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=23.7
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 177 ~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..-.++.+.|..|.||||+++.+....
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455789999999999999999988876
No 448
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=63.69 E-value=6.5 Score=36.52 Aligned_cols=25 Identities=44% Similarity=0.565 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.++++.|-.|.||||+++.+..-.
T Consensus 29 Geiv~llG~NGaGKTTlLkti~Gl~ 53 (237)
T COG0410 29 GEIVALLGRNGAGKTTLLKTIMGLV 53 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999998876
No 449
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=63.61 E-value=6.2 Score=37.32 Aligned_cols=26 Identities=38% Similarity=0.552 Sum_probs=22.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.=.+++|.|..|.|||||++.+..-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999987765
No 450
>COG1084 Predicted GTPase [General function prediction only]
Probab=63.60 E-value=1.1e+02 Score=30.30 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=24.2
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhhccC
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKFLES 206 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~~~~ 206 (594)
+...+-|.|+..+||+|+.+.+-...-++
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEv 195 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEV 195 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCcc
Confidence 77888999999999999999887765333
No 451
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=63.60 E-value=8.8 Score=43.34 Aligned_cols=46 Identities=30% Similarity=0.351 Sum_probs=36.7
Q ss_pred CceechhHHHHHHHHHHhc-------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~-------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+++.|++..++.+.+.+.- ...+.+-++|..|.||||+++.+.+..
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence 4578999998888777632 133567799999999999999998876
No 452
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=63.54 E-value=6.5 Score=33.78 Aligned_cols=24 Identities=42% Similarity=0.440 Sum_probs=20.3
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+.|-+.|-.|.|||||++.+....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 456789999999999999987754
No 453
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=63.54 E-value=5.9 Score=35.06 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=18.4
Q ss_pred EEEEecCCCchhHHHHHHHHhh
Q 007656 182 IGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~~ 203 (594)
|.++|.+|+||||+++...+..
T Consensus 4 i~liG~~~~GKTsli~~~~~~~ 25 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQNV 25 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999988865443
No 454
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=63.44 E-value=6.2 Score=37.88 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.7
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+|+|.|-.|.||||+++.+...+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l 23 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF 23 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999888766
No 455
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=63.44 E-value=6.3 Score=37.05 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+....
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 33 GEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3578999999999999999988754
No 456
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=63.34 E-value=13 Score=39.64 Aligned_cols=46 Identities=26% Similarity=0.372 Sum_probs=38.8
Q ss_pred CceechhHHHHHHHHHHhc------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++-|++..+.++.+.+.. ...+-+=++|..|.|||.||+.+.+..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel 247 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL 247 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc
Confidence 5678999999999888754 245677799999999999999999987
No 457
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=63.28 E-value=6.1 Score=37.28 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+....
T Consensus 12 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 12 GEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999988765
No 458
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=63.27 E-value=6.2 Score=36.94 Aligned_cols=46 Identities=30% Similarity=0.392 Sum_probs=29.7
Q ss_pred Cceech-hHHHHHHHHHHhcC---CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGL-QSQLEQVWRCLVEE---SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~-~~~~~~i~~~L~~~---~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.-++|- ....-...+.+.++ ....+=|+|-.|+|||.|++.+++..
T Consensus 9 nfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~ 58 (219)
T PF00308_consen 9 NFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEA 58 (219)
T ss_dssp CS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 344564 23333444444332 34457799999999999999999987
No 459
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=63.20 E-value=6.5 Score=36.82 Aligned_cols=26 Identities=42% Similarity=0.570 Sum_probs=22.1
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.=.+++|.|-.|.|||||++.+..-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999887654
No 460
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=63.20 E-value=12 Score=42.20 Aligned_cols=47 Identities=23% Similarity=0.411 Sum_probs=38.2
Q ss_pred CCceechhHHHHHHHHHHhcC---------CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 157 EPTIVGLQSQLEQVWRCLVEE---------SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 157 ~~~~vG~~~~~~~i~~~L~~~---------~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...++|.+..++.+.+.+... ...++-++|..|+|||++|+.+....
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 355789999999888888631 24567899999999999999998877
No 461
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=63.13 E-value=6.6 Score=36.13 Aligned_cols=26 Identities=42% Similarity=0.613 Sum_probs=22.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.=.+++|.|..|.||||+++.+....
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999987765
No 462
>COG4240 Predicted kinase [General function prediction only]
Probab=63.11 E-value=12 Score=34.80 Aligned_cols=29 Identities=31% Similarity=0.359 Sum_probs=26.2
Q ss_pred hcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 175 VEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 175 ~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++.-+++|+|..|.||||++-.+++..
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L 74 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLL 74 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHH
Confidence 33678999999999999999999999988
No 463
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=63.09 E-value=5.9 Score=34.78 Aligned_cols=19 Identities=37% Similarity=0.620 Sum_probs=16.5
Q ss_pred EEEEecCCCchhHHHHHHH
Q 007656 182 IGLYGMGGVGKTTLLTHIN 200 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~ 200 (594)
|.++|.+|+||||++..+.
T Consensus 3 v~~~G~~~~GKTsli~~l~ 21 (159)
T cd04150 3 ILMVGLDAAGKTTILYKLK 21 (159)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6789999999999988763
No 464
>PRK07429 phosphoribulokinase; Provisional
Probab=63.08 E-value=7.7 Score=38.76 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=23.9
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 177 ~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+..-+|+|.|..|.||||+++.+...+
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll 32 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLL 32 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHh
Confidence 356799999999999999999988776
No 465
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=63.03 E-value=6.9 Score=35.02 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|-.|.|||||++.+....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3578999999999999999988765
No 466
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=62.99 E-value=6.4 Score=37.48 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+....
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 28 GETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999988754
No 467
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=62.93 E-value=7.7 Score=35.40 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHHh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
++.|+++|-.|+|||||...+...
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~ 25 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQ 25 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHH
Confidence 578999999999999999887763
No 468
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=62.90 E-value=6.6 Score=36.36 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+....
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 4578999999999999999987754
No 469
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=62.85 E-value=7.2 Score=34.95 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=18.5
Q ss_pred EEEEEecCCCchhHHHHHHHHh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~ 202 (594)
-|.++|..|+||||++..+.+.
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4779999999999998876654
No 470
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=62.84 E-value=6.7 Score=35.84 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHHh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
=.+++|.|-.|.||||+++.+...
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358899999999999999998764
No 471
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=62.81 E-value=5.5 Score=36.95 Aligned_cols=24 Identities=33% Similarity=0.682 Sum_probs=20.6
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+.|+|+|-||+||+|..+.+.-..
T Consensus 2 r~iAiYGKGGIGKSTts~N~aAAl 25 (278)
T COG1348 2 RQIAIYGKGGIGKSTTSQNLAAAL 25 (278)
T ss_pred ceEEEecCCCcCcchhHHHHHHHH
Confidence 568999999999999988776665
No 472
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=62.74 E-value=6.5 Score=37.87 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|-.|.|||||++.+....
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999988765
No 473
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=62.74 E-value=7.6 Score=34.69 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=20.3
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
++.+.|..|.||||++..+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67889999999999998887766
No 474
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=62.70 E-value=5.7 Score=39.06 Aligned_cols=22 Identities=36% Similarity=0.745 Sum_probs=18.7
Q ss_pred EEEEecCCCchhHHHHHHHHhh
Q 007656 182 IGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~~ 203 (594)
|++.|-||+||||.+..+.-.+
T Consensus 3 ia~~gKGGVGKTTta~nLA~~L 24 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIAL 24 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 7899999999999887766655
No 475
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=62.66 E-value=11 Score=38.45 Aligned_cols=42 Identities=29% Similarity=0.411 Sum_probs=31.9
Q ss_pred chhHHHHHHHHHHhc---CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 162 GLQSQLEQVWRCLVE---ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 162 G~~~~~~~i~~~L~~---~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-..++++.+...... ....+|+|+|..|.||||++..+...+
T Consensus 185 NTpeDl~~l~~~~~~~~~~~~~~~~~~g~~~~GKtt~~~~l~~~l 229 (366)
T PRK14489 185 NTPEDLEQLRAIPDGTTTGAPPLLGVVGYSGTGKTTLLEKLIPEL 229 (366)
T ss_pred CCHHHHHHHhhhhhcccCCCccEEEEecCCCCCHHHHHHHHHHHH
Confidence 334566666554432 257899999999999999999988887
No 476
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=62.57 E-value=7.4 Score=35.45 Aligned_cols=27 Identities=48% Similarity=0.628 Sum_probs=24.2
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 177 ~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
++=.+.|+.|..|.||||+++.++.-+
T Consensus 26 e~Gei~GlLG~NGAGKTT~LRmiatlL 52 (245)
T COG4555 26 EEGEITGLLGENGAGKTTLLRMIATLL 52 (245)
T ss_pred ccceEEEEEcCCCCCchhHHHHHHHhc
Confidence 356789999999999999999999877
No 477
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=62.51 E-value=7.1 Score=34.56 Aligned_cols=25 Identities=28% Similarity=0.516 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+....
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999987765
No 478
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=62.49 E-value=8.2 Score=36.28 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=21.7
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
++++|+|..|.||||++..+...+
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L 25 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNL 25 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHH
Confidence 689999999999999998888777
No 479
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=62.47 E-value=6.7 Score=36.42 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=21.4
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.|..|.||||+++.+..-.
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999988754
No 480
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=62.36 E-value=6.7 Score=37.04 Aligned_cols=25 Identities=40% Similarity=0.499 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|-.|.|||||++.+..-.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999988754
No 481
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=62.28 E-value=6.4 Score=37.46 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.8
Q ss_pred eEEEEEecCCCchhHHHHHHHHh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
.+++|.|..|.|||||++.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 27 EIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999998775
No 482
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=62.24 E-value=6.8 Score=36.57 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=21.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|-.|.|||||++.+..-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 3578999999999999999987654
No 483
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=62.18 E-value=6.5 Score=37.25 Aligned_cols=25 Identities=44% Similarity=0.565 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+..-.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCCC
Confidence 3579999999999999999987754
No 484
>PRK08356 hypothetical protein; Provisional
Probab=62.17 E-value=7.2 Score=35.73 Aligned_cols=20 Identities=35% Similarity=0.477 Sum_probs=18.5
Q ss_pred eEEEEEecCCCchhHHHHHH
Q 007656 180 GIIGLYGMGGVGKTTLLTHI 199 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~ 199 (594)
.+|.++|..|.||||+++.+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l 25 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFF 25 (195)
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999988
No 485
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=62.14 E-value=12 Score=36.35 Aligned_cols=37 Identities=27% Similarity=0.566 Sum_probs=29.9
Q ss_pred HHHHHHHHhc--CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 167 LEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 167 ~~~i~~~L~~--~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-.+++..+.. ++-.+|||-|.+|.||+|+...+-..+
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence 3456666644 588899999999999999998877776
No 486
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=62.12 E-value=6.8 Score=37.29 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+....
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 27 GEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999988765
No 487
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=62.08 E-value=7 Score=36.19 Aligned_cols=26 Identities=38% Similarity=0.420 Sum_probs=22.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.=.+++|.|-.|.||||+++.+....
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999988765
No 488
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=62.04 E-value=8.1 Score=33.99 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=19.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHHh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
..-+.++|..|+||||++..+...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~ 26 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSG 26 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Confidence 356789999999999999876543
No 489
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=61.95 E-value=8 Score=36.14 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.8
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+|+|.|..|.||||+++.+....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~ 26 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKL 26 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998876
No 490
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=61.92 E-value=6.9 Score=36.72 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|-.|.|||||++.+..-.
T Consensus 34 Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 34 GECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999988765
No 491
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=61.88 E-value=8.8 Score=32.72 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=19.6
Q ss_pred EEEEecCCCchhHHHHHHHHhh
Q 007656 182 IGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~~ 203 (594)
|=++|..|.|||++++.+....
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999999998887
No 492
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=61.84 E-value=7.3 Score=33.67 Aligned_cols=25 Identities=44% Similarity=0.630 Sum_probs=21.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|-.|.||||+++.+....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3578999999999999999987754
No 493
>PRK10908 cell division protein FtsE; Provisional
Probab=61.81 E-value=7 Score=36.62 Aligned_cols=26 Identities=35% Similarity=0.308 Sum_probs=22.1
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.=.+++|.|-.|.|||||++.+....
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678999999999999999987654
No 494
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=61.75 E-value=6.9 Score=37.68 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=22.6
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.=.+++|.|..|.|||||++.+....
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 30 AGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999988765
No 495
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=61.72 E-value=6.7 Score=37.49 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=22.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.=.+++|.|..|.|||||++.+..-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34579999999999999999987654
No 496
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=61.72 E-value=6.9 Score=37.08 Aligned_cols=26 Identities=31% Similarity=0.555 Sum_probs=22.4
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.=.+++|.|..|.|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34579999999999999999988765
No 497
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=61.63 E-value=7.3 Score=35.75 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=22.4
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.=.+++|.|..|.||||+++.+....
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34679999999999999999988765
No 498
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=61.60 E-value=6.6 Score=34.46 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=17.3
Q ss_pred EEEEecCCCchhHHHHHHHH
Q 007656 182 IGLYGMGGVGKTTLLTHINN 201 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~ 201 (594)
|.++|.+|+|||+++..+..
T Consensus 3 i~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 67899999999999987654
No 499
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=61.59 E-value=11 Score=37.32 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=27.0
Q ss_pred HHHHHHhc--CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 169 QVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 169 ~i~~~L~~--~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++.+.. ....+++|.|.+|.||||++..+....
T Consensus 22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444432 578999999999999999988877765
No 500
>PRK14738 gmk guanylate kinase; Provisional
Probab=61.59 E-value=7.6 Score=35.96 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=21.6
Q ss_pred CceEEEEEecCCCchhHHHHHHHHh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
.-..+-|.|..|.||||+++.+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 5678889999999999999988654
Done!