Query 007656
Match_columns 594
No_of_seqs 414 out of 4142
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 07:14:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007656.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007656hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o6n_A APL1; leucine-rich repe 99.9 1.5E-25 5E-30 231.1 17.4 288 218-560 43-349 (390)
2 2id5_A Lingo-1, leucine rich r 99.9 7.5E-25 2.6E-29 232.1 21.0 291 220-559 32-329 (477)
3 4fmz_A Internalin; leucine ric 99.9 8.6E-25 2.9E-29 221.6 17.1 280 218-561 64-344 (347)
4 3o6n_A APL1; leucine-rich repe 99.9 1.6E-24 5.4E-29 223.3 18.6 280 218-538 67-350 (390)
5 3oja_B Anopheles plasmodium-re 99.9 7.4E-25 2.5E-29 238.3 16.8 288 219-560 50-355 (597)
6 4ecn_A Leucine-rich repeat pro 99.9 1E-24 3.6E-29 242.9 15.7 301 218-561 489-838 (876)
7 4eco_A Uncharacterized protein 99.9 4.5E-25 1.5E-29 241.4 12.6 301 218-561 247-598 (636)
8 3oja_B Anopheles plasmodium-re 99.9 1.7E-24 5.8E-29 235.5 16.5 280 218-538 73-356 (597)
9 4fmz_A Internalin; leucine ric 99.9 4.7E-24 1.6E-28 216.2 15.8 279 218-561 42-322 (347)
10 2z81_A CD282 antigen, TOLL-lik 99.9 8.1E-24 2.8E-28 228.3 16.8 112 218-333 48-162 (549)
11 4ecn_A Leucine-rich repeat pro 99.9 4.2E-24 1.4E-28 238.1 14.9 308 218-560 446-816 (876)
12 4eco_A Uncharacterized protein 99.9 3.5E-24 1.2E-28 234.3 12.1 311 218-560 204-576 (636)
13 3v47_A TOLL-like receptor 5B a 99.9 1.1E-23 3.6E-28 221.9 14.6 126 410-560 275-405 (455)
14 1o6v_A Internalin A; bacterial 99.9 4.2E-23 1.4E-27 217.7 19.1 302 218-560 66-385 (466)
15 3t6q_A CD180 antigen; protein- 99.9 5.4E-23 1.8E-27 224.6 19.7 143 405-560 273-435 (606)
16 4fcg_A Uncharacterized protein 99.9 2.4E-23 8.3E-28 208.6 15.3 88 220-312 81-168 (328)
17 3v47_A TOLL-like receptor 5B a 99.9 8E-23 2.7E-27 215.2 19.0 297 218-544 52-412 (455)
18 1xku_A Decorin; proteoglycan, 99.9 6.7E-23 2.3E-27 206.1 17.1 104 221-331 53-157 (330)
19 2id5_A Lingo-1, leucine rich r 99.9 7.3E-23 2.5E-27 216.8 18.2 272 218-538 54-331 (477)
20 4fcg_A Uncharacterized protein 99.9 7.7E-23 2.6E-27 205.0 16.6 230 243-535 79-309 (328)
21 2ft3_A Biglycan; proteoglycan, 99.9 2.7E-23 9.2E-28 209.2 12.9 283 221-560 34-330 (332)
22 2z63_A TOLL-like receptor 4, v 99.9 4.1E-23 1.4E-27 223.9 15.2 161 383-560 346-528 (570)
23 2z7x_B TOLL-like receptor 1, v 99.9 1.8E-22 6.2E-27 216.2 19.8 319 220-560 21-478 (520)
24 1o6v_A Internalin A; bacterial 99.9 2.2E-22 7.6E-27 212.2 19.8 281 218-546 88-393 (466)
25 3vq2_A TLR4, TOLL-like recepto 99.9 2.2E-22 7.6E-27 219.7 20.1 110 218-333 54-167 (606)
26 3rgz_A Protein brassinosteroid 99.9 8.5E-23 2.9E-27 228.6 17.2 111 218-332 316-431 (768)
27 3rgz_A Protein brassinosteroid 99.9 7.9E-23 2.7E-27 228.8 16.6 282 244-560 393-737 (768)
28 3t6q_A CD180 antigen; protein- 99.9 1.5E-22 5.2E-27 221.1 18.3 105 442-561 348-460 (606)
29 3vq2_A TLR4, TOLL-like recepto 99.9 2E-22 6.9E-27 220.1 18.0 307 220-561 32-435 (606)
30 2z81_A CD282 antigen, TOLL-lik 99.9 2.8E-22 9.4E-27 216.3 17.6 108 219-332 25-136 (549)
31 1xku_A Decorin; proteoglycan, 99.9 9.1E-22 3.1E-26 197.8 20.0 262 221-538 32-304 (330)
32 1ogq_A PGIP-2, polygalacturona 99.9 8.7E-23 3E-27 203.4 11.8 252 220-544 50-308 (313)
33 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.3E-22 2.2E-26 213.9 19.1 320 220-560 52-507 (562)
34 3bz5_A Internalin-J, INLJ; leu 99.9 2.5E-22 8.4E-27 210.4 15.2 297 218-560 40-349 (457)
35 2ft3_A Biglycan; proteoglycan, 99.9 4.5E-22 1.5E-26 200.2 14.8 274 219-538 53-331 (332)
36 1ziw_A TOLL-like receptor 3; i 99.9 1.9E-21 6.6E-26 215.2 20.9 227 220-477 25-282 (680)
37 3bz5_A Internalin-J, INLJ; leu 99.9 5.3E-22 1.8E-26 207.8 15.5 288 218-544 62-355 (457)
38 3j0a_A TOLL-like receptor 5; m 99.9 1.5E-21 5E-26 220.8 19.4 302 219-560 23-391 (844)
39 2z7x_B TOLL-like receptor 1, v 99.9 5E-21 1.7E-25 205.0 21.6 144 223-396 3-150 (520)
40 2z63_A TOLL-like receptor 4, v 99.9 1.1E-21 3.9E-26 212.5 16.2 110 218-333 50-163 (570)
41 3j0a_A TOLL-like receptor 5; m 99.9 7.7E-21 2.6E-25 214.9 19.8 306 218-560 46-411 (844)
42 1ogq_A PGIP-2, polygalacturona 99.8 3.3E-21 1.1E-25 191.9 13.3 230 218-520 74-308 (313)
43 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.2E-20 1.1E-24 200.6 22.0 149 218-396 29-181 (562)
44 2z80_A TOLL-like receptor 2, v 99.8 6.6E-21 2.2E-25 193.4 15.6 271 218-538 29-312 (353)
45 1ziw_A TOLL-like receptor 3; i 99.8 6.5E-21 2.2E-25 211.0 16.2 227 218-477 47-306 (680)
46 4g8a_A TOLL-like receptor 4; l 99.8 2.8E-20 9.6E-25 204.2 18.9 104 441-558 466-575 (635)
47 2z66_A Variable lymphocyte rec 99.8 1.7E-20 5.9E-25 186.3 14.8 241 224-538 11-259 (306)
48 3zyi_A Leucine-rich repeat-con 99.8 5.5E-20 1.9E-24 193.1 19.0 241 222-538 56-301 (452)
49 3zyj_A Leucine-rich repeat-con 99.8 7E-20 2.4E-24 191.6 19.0 241 222-514 45-290 (440)
50 3g06_A SSPH2 (leucine-rich rep 99.8 2E-20 6.9E-25 201.8 14.8 253 221-560 41-294 (622)
51 2z80_A TOLL-like receptor 2, v 99.8 3.5E-20 1.2E-24 188.0 15.1 274 242-560 28-311 (353)
52 3o53_A Protein LRIM1, AGAP0063 99.8 6.8E-21 2.3E-25 190.1 8.4 245 218-543 32-278 (317)
53 3zyj_A Leucine-rich repeat-con 99.8 1.8E-19 6.1E-24 188.5 18.3 240 246-558 44-287 (440)
54 1jl5_A Outer protein YOPM; leu 99.8 1.1E-20 3.7E-25 197.7 8.8 203 218-477 32-247 (454)
55 3zyi_A Leucine-rich repeat-con 99.8 5.7E-20 1.9E-24 193.0 13.0 223 220-478 75-301 (452)
56 3o53_A Protein LRIM1, AGAP0063 99.8 7.5E-20 2.6E-24 182.6 12.7 267 221-568 11-280 (317)
57 3g06_A SSPH2 (leucine-rich rep 99.8 2.7E-19 9.2E-24 193.0 16.9 235 220-538 61-295 (622)
58 1jl5_A Outer protein YOPM; leu 99.8 4.5E-19 1.5E-23 185.5 17.4 160 220-423 131-290 (454)
59 3oja_A Leucine-rich immune mol 99.8 2.2E-19 7.4E-24 189.7 14.9 239 218-537 32-272 (487)
60 4g8a_A TOLL-like receptor 4; l 99.8 8.9E-20 3.1E-24 200.1 10.4 109 218-332 74-186 (635)
61 1ozn_A Reticulon 4 receptor; N 99.8 2.3E-19 7.8E-24 176.3 12.1 219 224-479 15-237 (285)
62 2z66_A Variable lymphocyte rec 99.8 7E-19 2.4E-23 174.7 14.5 239 248-560 10-258 (306)
63 1wwl_A Monocyte differentiatio 99.8 7.7E-20 2.6E-24 182.0 6.4 246 218-538 41-307 (312)
64 1wwl_A Monocyte differentiatio 99.8 1.8E-19 6.1E-24 179.4 8.4 135 222-374 65-217 (312)
65 1ozn_A Reticulon 4 receptor; N 99.8 2E-18 6.9E-23 169.5 15.0 219 247-538 13-236 (285)
66 2xwt_C Thyrotropin receptor; s 99.8 1.8E-18 6.3E-23 165.0 12.6 102 223-333 14-119 (239)
67 3ogk_B Coronatine-insensitive 99.7 1.2E-18 4.2E-23 189.5 9.2 301 218-561 162-524 (592)
68 4ay9_X Follicle-stimulating ho 99.7 1.9E-17 6.4E-22 167.5 16.7 235 224-536 13-255 (350)
69 1h6u_A Internalin H; cell adhe 99.7 1E-17 3.5E-22 166.1 13.0 102 219-331 40-141 (308)
70 2o6q_A Variable lymphocyte rec 99.7 4E-17 1.4E-21 158.8 15.0 196 221-478 17-216 (270)
71 2z62_A TOLL-like receptor 4, v 99.7 2.5E-17 8.4E-22 160.9 13.1 199 221-478 29-235 (276)
72 2o6q_A Variable lymphocyte rec 99.7 5.6E-17 1.9E-21 157.7 15.0 198 245-514 16-216 (270)
73 2z62_A TOLL-like receptor 4, v 99.7 3.9E-17 1.3E-21 159.5 13.9 213 229-513 15-234 (276)
74 3rfs_A Internalin B, repeat mo 99.7 2.1E-17 7.3E-22 160.9 11.8 105 219-331 40-145 (272)
75 2xwt_C Thyrotropin receptor; s 99.7 1.3E-17 4.3E-22 159.2 9.7 107 220-333 31-145 (239)
76 1p9a_G Platelet glycoprotein I 99.7 4.3E-17 1.5E-21 160.1 13.7 198 218-479 8-207 (290)
77 2ast_B S-phase kinase-associat 99.7 7.7E-18 2.6E-22 169.5 8.1 224 221-513 48-282 (336)
78 3rfs_A Internalin B, repeat mo 99.7 4.6E-17 1.6E-21 158.5 13.2 223 221-525 20-244 (272)
79 4ay9_X Follicle-stimulating ho 99.7 5.4E-17 1.8E-21 164.1 14.1 240 248-558 12-254 (350)
80 1p9a_G Platelet glycoprotein I 99.7 4E-17 1.4E-21 160.3 12.5 198 241-514 6-206 (290)
81 1h6u_A Internalin H; cell adhe 99.7 4.8E-17 1.6E-21 161.3 12.3 196 241-483 37-232 (308)
82 3oja_A Leucine-rich immune mol 99.7 2.1E-17 7.3E-22 174.4 10.0 217 218-516 56-275 (487)
83 1z7x_W Ribonuclease inhibitor; 99.7 7.1E-18 2.4E-22 177.6 5.4 287 221-538 86-409 (461)
84 1z7x_W Ribonuclease inhibitor; 99.7 1.2E-18 4E-23 183.6 -1.0 317 218-560 26-408 (461)
85 2ast_B S-phase kinase-associat 99.7 1.6E-17 5.3E-22 167.3 6.9 243 245-560 47-303 (336)
86 2ca6_A RAN GTPase-activating p 99.7 1E-17 3.5E-22 172.0 5.3 243 231-513 19-313 (386)
87 3ogk_B Coronatine-insensitive 99.7 5.3E-17 1.8E-21 176.6 10.5 284 218-543 190-528 (592)
88 2ca6_A RAN GTPase-activating p 99.7 4.3E-17 1.5E-21 167.3 6.9 239 218-479 30-315 (386)
89 1h6t_A Internalin B; cell adhe 99.7 3.5E-16 1.2E-20 153.7 11.5 170 241-478 42-211 (291)
90 2p1m_B Transport inhibitor res 99.6 3.6E-17 1.2E-21 178.0 4.6 299 218-561 154-517 (594)
91 4glp_A Monocyte differentiatio 99.6 6.2E-17 2.1E-21 160.8 5.0 206 243-513 89-304 (310)
92 1m9s_A Internalin B; cell inva 99.6 7.9E-16 2.7E-20 165.7 11.7 82 242-331 40-121 (605)
93 3qfl_A MLA10; coiled-coil, (CC 99.6 2.6E-15 8.7E-20 123.5 11.6 82 8-97 2-84 (115)
94 3goz_A Leucine-rich repeat-con 99.6 1.4E-15 4.9E-20 154.5 11.0 236 220-514 22-295 (362)
95 2p1m_B Transport inhibitor res 99.6 2.4E-16 8.2E-21 171.5 4.7 279 218-539 182-518 (594)
96 1h6t_A Internalin B; cell adhe 99.6 2.8E-15 9.5E-20 147.2 10.7 167 218-454 44-210 (291)
97 3m19_A Variable lymphocyte rec 99.6 1.2E-14 4E-19 139.6 13.6 104 221-332 15-120 (251)
98 3m19_A Variable lymphocyte rec 99.6 1.3E-14 4.3E-19 139.4 12.6 156 220-423 35-192 (251)
99 4glp_A Monocyte differentiatio 99.6 7.9E-15 2.7E-19 145.6 11.4 225 245-538 64-305 (310)
100 1m9s_A Internalin B; cell inva 99.6 1.1E-14 3.9E-19 156.8 12.3 169 218-422 41-209 (605)
101 3goz_A Leucine-rich repeat-con 99.5 1.3E-15 4.4E-20 154.8 4.0 259 226-538 4-295 (362)
102 4ezg_A Putative uncharacterize 99.5 5E-14 1.7E-18 129.8 11.8 153 265-477 39-191 (197)
103 3cvr_A Invasion plasmid antige 99.5 3.5E-14 1.2E-18 151.3 12.2 188 220-484 59-247 (571)
104 1xeu_A Internalin C; cellular 99.5 1E-14 3.5E-19 140.9 6.5 124 218-370 17-140 (263)
105 1xeu_A Internalin C; cellular 99.5 4.5E-14 1.5E-18 136.3 9.5 167 243-478 17-183 (263)
106 2v9t_B SLIT homolog 2 protein 99.5 7.2E-14 2.5E-18 131.0 10.3 131 220-370 32-164 (220)
107 2o6s_A Variable lymphocyte rec 99.5 8.3E-14 2.8E-18 129.6 10.1 102 224-333 11-114 (208)
108 3cvr_A Invasion plasmid antige 99.5 1.5E-13 5.1E-18 146.4 12.5 177 245-515 59-242 (571)
109 2ell_A Acidic leucine-rich nuc 99.5 9.3E-14 3.2E-18 124.4 8.3 134 218-370 22-159 (168)
110 2v9t_B SLIT homolog 2 protein 99.5 1.3E-13 4.6E-18 129.2 9.5 124 223-369 14-139 (220)
111 3e6j_A Variable lymphocyte rec 99.4 2E-13 6.9E-18 128.9 10.3 131 219-370 39-171 (229)
112 3e6j_A Variable lymphocyte rec 99.4 2.5E-13 8.6E-18 128.2 10.7 150 222-423 21-172 (229)
113 4ezg_A Putative uncharacterize 99.4 3.2E-13 1.1E-17 124.3 10.8 129 218-370 64-193 (197)
114 2o6s_A Variable lymphocyte rec 99.4 4.7E-13 1.6E-17 124.4 11.3 130 219-368 27-158 (208)
115 2v70_A SLIT-2, SLIT homolog 2 99.4 2.8E-13 9.6E-18 127.0 9.7 131 220-370 32-165 (220)
116 2v70_A SLIT-2, SLIT homolog 2 99.4 3.5E-13 1.2E-17 126.4 9.6 123 223-368 14-139 (220)
117 1dce_A Protein (RAB geranylger 99.4 1.1E-14 3.9E-19 155.8 -1.2 84 405-510 481-567 (567)
118 2xot_A Amphoterin-induced prot 99.4 5.5E-13 1.9E-17 135.2 10.1 103 223-333 21-126 (361)
119 2je0_A Acidic leucine-rich nuc 99.4 3.3E-13 1.1E-17 118.1 6.3 130 218-366 15-148 (149)
120 2xot_A Amphoterin-induced prot 99.4 2.8E-13 9.6E-18 137.3 6.6 135 220-371 39-176 (361)
121 1a9n_A U2A', U2A'; complex (nu 99.4 6.4E-13 2.2E-17 119.9 7.8 136 218-372 17-154 (176)
122 2wfh_A SLIT homolog 2 protein 99.4 1.8E-12 6.2E-17 118.7 10.4 125 223-370 13-138 (193)
123 1w8a_A SLIT protein; signaling 99.3 1.7E-12 6E-17 118.8 7.5 125 223-370 11-138 (192)
124 2ell_A Acidic leucine-rich nuc 99.3 5.4E-12 1.9E-16 112.8 8.8 109 243-371 22-133 (168)
125 1dce_A Protein (RAB geranylger 99.3 7.6E-12 2.6E-16 133.9 11.3 124 246-390 442-566 (567)
126 2wfh_A SLIT homolog 2 protein 99.3 8.5E-12 2.9E-16 114.2 9.6 108 219-332 30-139 (193)
127 2o6r_A Variable lymphocyte rec 99.3 1.4E-11 4.8E-16 111.2 9.9 126 222-370 9-136 (177)
128 1a9n_A U2A', U2A'; complex (nu 99.2 7.1E-12 2.4E-16 113.0 7.1 113 241-372 15-127 (176)
129 1ds9_A Outer arm dynein; leuci 99.2 1.4E-12 4.7E-17 120.2 2.1 118 233-372 37-154 (198)
130 4b8c_D Glucose-repressible alc 99.2 9.5E-12 3.3E-16 137.4 9.0 109 218-333 222-330 (727)
131 4b8c_D Glucose-repressible alc 99.2 5.4E-12 1.8E-16 139.3 6.5 120 230-371 210-329 (727)
132 2je0_A Acidic leucine-rich nuc 99.2 1.3E-11 4.5E-16 107.9 7.4 103 218-327 40-148 (149)
133 1ds9_A Outer arm dynein; leuci 99.2 1.5E-12 5.1E-17 119.9 1.1 134 218-364 46-180 (198)
134 2o6r_A Variable lymphocyte rec 99.2 3.7E-11 1.3E-15 108.4 10.1 110 219-333 27-138 (177)
135 3sb4_A Hypothetical leucine ri 99.2 2.8E-11 9.5E-16 121.0 10.1 98 409-532 225-326 (329)
136 3sb4_A Hypothetical leucine ri 99.2 4.3E-11 1.5E-15 119.6 11.5 251 219-510 48-328 (329)
137 1w8a_A SLIT protein; signaling 99.2 2E-11 6.9E-16 111.7 8.1 109 220-333 29-140 (192)
138 3g39_A Variable lymphocyte rec 99.2 5.2E-11 1.8E-15 106.5 8.7 104 221-332 10-115 (170)
139 2r9u_A Variable lymphocyte rec 99.2 5.7E-11 1.9E-15 106.6 8.8 103 222-332 14-118 (174)
140 4fdw_A Leucine rich hypothetic 99.1 2.2E-09 7.7E-14 109.6 19.2 257 218-558 111-378 (401)
141 4fdw_A Leucine rich hypothetic 99.1 6E-09 2E-13 106.5 20.1 222 218-521 134-362 (401)
142 3g39_A Variable lymphocyte rec 99.1 3.2E-10 1.1E-14 101.4 8.7 104 246-370 10-114 (170)
143 2r9u_A Variable lymphocyte rec 99.1 3.8E-10 1.3E-14 101.2 8.8 104 247-371 14-118 (174)
144 2ifg_A High affinity nerve gro 98.9 2.7E-09 9.2E-14 107.3 8.8 102 224-332 12-116 (347)
145 4fs7_A Uncharacterized protein 98.7 1.4E-07 4.9E-12 96.4 13.6 284 207-559 64-375 (394)
146 3un9_A NLR family member X1; l 98.7 4.8E-09 1.6E-13 106.1 2.3 135 219-370 71-223 (372)
147 3un9_A NLR family member X1; l 98.6 9.5E-09 3.3E-13 103.9 2.6 113 244-371 71-196 (372)
148 2ifg_A High affinity nerve gro 98.6 7.6E-08 2.6E-12 96.6 8.2 89 218-310 29-118 (347)
149 2a5y_B CED-4; apoptosis; HET: 98.6 5.1E-08 1.7E-12 104.1 6.6 58 158-216 128-190 (549)
150 2ra8_A Uncharacterized protein 98.4 5.4E-07 1.8E-11 90.3 9.6 169 263-478 132-318 (362)
151 4fs7_A Uncharacterized protein 98.4 1.9E-06 6.6E-11 87.9 13.2 264 207-535 87-374 (394)
152 4gt6_A Cell surface protein; l 98.4 7.2E-06 2.5E-10 83.7 16.0 291 218-567 61-374 (394)
153 3e4g_A ATP synthase subunit S, 98.3 2.6E-07 8.7E-12 81.4 3.9 39 504-542 115-154 (176)
154 3e4g_A ATP synthase subunit S, 98.3 2.5E-07 8.5E-12 81.5 3.8 89 410-519 61-155 (176)
155 4gt6_A Cell surface protein; l 98.3 6.3E-06 2.2E-10 84.1 14.3 269 207-536 80-366 (394)
156 2ra8_A Uncharacterized protein 98.1 3.9E-06 1.3E-10 84.0 8.1 83 241-328 135-228 (362)
157 4h09_A Hypothetical leucine ri 98.1 3.9E-05 1.3E-09 77.7 14.6 103 405-534 235-340 (379)
158 3rw6_A Nuclear RNA export fact 98.1 5.9E-06 2E-10 78.4 7.6 86 267-364 167-257 (267)
159 1io0_A Tropomodulin; LRR prote 98.0 5.1E-06 1.7E-10 74.9 5.6 58 241-301 61-128 (185)
160 1io0_A Tropomodulin; LRR prote 98.0 4.9E-06 1.7E-10 75.0 4.9 119 240-372 31-165 (185)
161 1vt4_I APAF-1 related killer D 98.0 2.9E-06 9.9E-11 93.7 3.4 58 158-216 128-187 (1221)
162 3rw6_A Nuclear RNA export fact 97.9 2.7E-06 9.1E-11 80.8 2.6 83 241-327 166-259 (267)
163 4h09_A Hypothetical leucine ri 97.8 0.00018 6.1E-09 72.8 13.7 281 218-557 44-340 (379)
164 1z6t_A APAF-1, apoptotic prote 97.8 1.1E-05 3.6E-10 87.2 4.1 58 158-216 124-185 (591)
165 3sfz_A APAF-1, apoptotic pepti 97.6 2.7E-05 9.4E-10 91.8 4.8 60 157-216 123-185 (1249)
166 3rfe_A Platelet glycoprotein I 96.5 0.0034 1.2E-07 52.4 5.4 54 275-331 12-67 (130)
167 3rfe_A Platelet glycoprotein I 96.0 0.0071 2.4E-07 50.4 5.0 52 249-305 12-66 (130)
168 1jbk_A CLPB protein; beta barr 95.9 0.0094 3.2E-07 53.0 5.7 46 158-203 22-67 (195)
169 2qen_A Walker-type ATPase; unk 95.6 0.011 3.8E-07 58.5 5.6 44 158-203 12-55 (350)
170 1pgv_A TMD-1, tropomodulin TMD 95.5 0.026 8.8E-07 50.4 6.9 119 241-371 37-170 (197)
171 1w5s_A Origin recognition comp 95.5 0.0092 3.2E-07 60.7 4.6 46 158-203 22-76 (412)
172 2p65_A Hypothetical protein PF 95.5 0.014 4.8E-07 51.6 5.2 46 158-203 22-67 (187)
173 2qby_A CDC6 homolog 1, cell di 95.1 0.018 6.1E-07 57.8 5.0 46 158-203 20-69 (386)
174 2fna_A Conserved hypothetical 95.0 0.022 7.6E-07 56.4 5.3 42 158-203 13-54 (357)
175 2chg_A Replication factor C sm 94.9 0.023 7.9E-07 51.8 4.8 46 158-203 17-62 (226)
176 1njg_A DNA polymerase III subu 94.5 0.034 1.2E-06 51.5 5.1 46 158-203 23-69 (250)
177 2qby_B CDC6 homolog 3, cell di 94.2 0.046 1.6E-06 54.8 5.5 46 158-203 20-69 (384)
178 1pgv_A TMD-1, tropomodulin TMD 94.1 0.038 1.3E-06 49.3 4.2 83 272-366 42-134 (197)
179 1sxj_B Activator 1 37 kDa subu 93.7 0.053 1.8E-06 52.8 4.8 46 158-203 21-66 (323)
180 1iqp_A RFCS; clamp loader, ext 93.6 0.08 2.7E-06 51.6 6.0 46 158-203 25-70 (327)
181 2v1u_A Cell division control p 93.5 0.047 1.6E-06 54.7 4.1 46 158-203 19-68 (387)
182 1fnn_A CDC6P, cell division co 93.4 0.088 3E-06 52.8 6.0 46 158-203 17-68 (389)
183 3h4m_A Proteasome-activating n 91.9 0.14 4.7E-06 48.9 4.8 46 158-203 17-75 (285)
184 1sxj_D Activator 1 41 kDa subu 91.8 0.12 4E-06 51.1 4.3 46 158-203 37-82 (353)
185 3pxg_A Negative regulator of g 91.2 0.2 7E-06 51.6 5.5 46 158-203 180-225 (468)
186 3n70_A Transport activator; si 90.6 0.26 9E-06 41.5 4.7 44 159-203 2-48 (145)
187 2chq_A Replication factor C sm 90.5 0.15 5.1E-06 49.4 3.5 46 158-203 17-62 (319)
188 1jr3_A DNA polymerase III subu 90.1 0.29 9.8E-06 48.7 5.3 46 158-203 16-62 (373)
189 1sxj_A Activator 1 95 kDa subu 89.9 0.28 9.7E-06 51.3 5.2 46 158-203 39-101 (516)
190 3cf0_A Transitional endoplasmi 89.8 0.31 1.1E-05 46.9 5.1 46 158-203 15-73 (301)
191 1sxj_C Activator 1 40 kDa subu 89.6 0.3 1E-05 47.9 4.9 46 158-203 25-70 (340)
192 3syl_A Protein CBBX; photosynt 89.5 0.36 1.2E-05 46.5 5.3 45 159-203 32-91 (309)
193 1rz3_A Hypothetical protein rb 89.4 0.5 1.7E-05 42.3 5.8 41 163-203 3-46 (201)
194 2qz4_A Paraplegin; AAA+, SPG7, 89.4 0.4 1.4E-05 44.8 5.5 46 158-203 6-63 (262)
195 3pvs_A Replication-associated 89.4 0.3 1E-05 49.9 4.8 46 158-203 26-74 (447)
196 2ga8_A Hypothetical 39.9 kDa p 89.4 0.46 1.6E-05 46.4 5.8 43 161-203 2-48 (359)
197 1sxj_E Activator 1 40 kDa subu 89.1 0.19 6.3E-06 49.7 3.0 46 158-203 14-60 (354)
198 1hqc_A RUVB; extended AAA-ATPa 89.0 0.32 1.1E-05 47.3 4.5 46 158-203 12-62 (324)
199 3te6_A Regulatory protein SIR3 89.0 0.3 1E-05 47.3 4.1 45 160-204 22-70 (318)
200 3b9p_A CG5977-PA, isoform A; A 88.9 0.41 1.4E-05 45.8 5.2 46 158-203 21-78 (297)
201 3ec2_A DNA replication protein 88.7 0.37 1.3E-05 42.2 4.4 41 163-203 19-62 (180)
202 3pfi_A Holliday junction ATP-d 88.7 0.37 1.3E-05 47.2 4.8 46 158-203 29-79 (338)
203 2wsm_A Hydrogenase expression/ 88.3 0.43 1.5E-05 43.3 4.6 46 158-203 9-54 (221)
204 1lv7_A FTSH; alpha/beta domain 87.8 0.46 1.6E-05 44.4 4.6 46 158-203 12-69 (257)
205 2hf9_A Probable hydrogenase ni 87.8 0.66 2.2E-05 42.2 5.6 39 165-203 24-62 (226)
206 3d8b_A Fidgetin-like protein 1 87.7 0.5 1.7E-05 46.7 5.1 46 158-203 84-141 (357)
207 3uk6_A RUVB-like 2; hexameric 87.4 0.66 2.3E-05 45.9 5.8 46 158-203 44-94 (368)
208 3pxi_A Negative regulator of g 87.3 0.54 1.9E-05 51.8 5.5 46 158-203 180-225 (758)
209 1qvr_A CLPB protein; coiled co 87.3 0.43 1.5E-05 53.4 4.6 46 158-203 170-215 (854)
210 3bos_A Putative DNA replicatio 87.2 0.71 2.4E-05 42.3 5.5 45 159-203 29-76 (242)
211 1ofh_A ATP-dependent HSL prote 86.9 0.59 2E-05 44.9 5.0 46 158-203 15-74 (310)
212 1xwi_A SKD1 protein; VPS4B, AA 86.6 0.7 2.4E-05 44.9 5.3 46 158-203 12-69 (322)
213 1in4_A RUVB, holliday junction 86.5 0.44 1.5E-05 46.6 3.8 46 158-203 25-75 (334)
214 1r6b_X CLPA protein; AAA+, N-t 86.3 0.71 2.4E-05 50.9 5.7 46 158-203 186-231 (758)
215 2w58_A DNAI, primosome compone 85.8 0.9 3.1E-05 40.5 5.3 39 165-203 36-78 (202)
216 3c8u_A Fructokinase; YP_612366 85.5 0.89 3.1E-05 40.8 5.1 38 166-203 7-46 (208)
217 2x8a_A Nuclear valosin-contain 85.3 0.89 3.1E-05 43.0 5.2 46 158-203 10-68 (274)
218 3eie_A Vacuolar protein sortin 85.3 0.86 2.9E-05 44.3 5.2 46 158-203 18-75 (322)
219 3kb2_A SPBC2 prophage-derived 84.9 0.59 2E-05 40.3 3.4 24 180-203 2-25 (173)
220 3fwy_A Light-independent proto 84.8 0.53 1.8E-05 45.5 3.4 27 177-203 46-72 (314)
221 4fcw_A Chaperone protein CLPB; 84.6 0.75 2.5E-05 44.3 4.4 46 158-203 17-71 (311)
222 3lw7_A Adenylate kinase relate 84.4 0.53 1.8E-05 40.7 3.0 23 180-203 2-24 (179)
223 3u61_B DNA polymerase accessor 83.7 1 3.4E-05 43.7 4.9 46 158-203 26-72 (324)
224 3co5_A Putative two-component 83.5 0.55 1.9E-05 39.3 2.6 45 158-203 4-51 (143)
225 1odf_A YGR205W, hypothetical 3 83.5 1.4 4.7E-05 42.0 5.6 27 177-203 29-55 (290)
226 1ojl_A Transcriptional regulat 83.3 1.2 3.9E-05 42.9 5.0 45 158-203 2-49 (304)
227 1zp6_A Hypothetical protein AT 83.3 0.7 2.4E-05 40.7 3.3 24 179-202 9-32 (191)
228 2r62_A Cell division protease 83.2 0.53 1.8E-05 44.3 2.5 46 158-203 11-68 (268)
229 3vaa_A Shikimate kinase, SK; s 83.0 0.75 2.6E-05 41.0 3.4 26 178-203 24-49 (199)
230 2qp9_X Vacuolar protein sortin 82.9 1.1 3.6E-05 44.3 4.7 46 158-203 51-108 (355)
231 3vfd_A Spastin; ATPase, microt 82.9 1.2 4E-05 44.6 5.1 46 158-203 115-172 (389)
232 1d2n_A N-ethylmaleimide-sensit 82.3 1.8 6.1E-05 40.7 5.9 46 158-203 33-88 (272)
233 2bjv_A PSP operon transcriptio 82.3 1.1 3.8E-05 41.9 4.4 46 158-203 6-53 (265)
234 1uj2_A Uridine-cytidine kinase 82.2 0.95 3.2E-05 42.1 3.9 27 177-203 20-46 (252)
235 1kgd_A CASK, peripheral plasma 82.0 0.83 2.8E-05 40.0 3.2 24 180-203 6-29 (180)
236 2zan_A Vacuolar protein sortin 81.9 1.4 4.6E-05 45.0 5.2 46 158-203 134-191 (444)
237 1qhx_A CPT, protein (chloramph 81.8 0.88 3E-05 39.5 3.3 24 180-203 4-27 (178)
238 2kjq_A DNAA-related protein; s 81.8 1.1 3.8E-05 37.8 3.8 42 159-203 19-60 (149)
239 1ixz_A ATP-dependent metallopr 81.5 1.5 5.3E-05 40.6 5.1 46 158-203 16-73 (254)
240 1kag_A SKI, shikimate kinase I 81.4 0.79 2.7E-05 39.6 2.8 24 180-203 5-28 (173)
241 1nks_A Adenylate kinase; therm 81.0 1.1 3.9E-05 39.3 3.8 24 180-203 2-25 (194)
242 2jaq_A Deoxyguanosine kinase; 80.5 1.1 3.6E-05 39.9 3.5 23 181-203 2-24 (205)
243 3uie_A Adenylyl-sulfate kinase 80.4 1.4 4.8E-05 39.2 4.2 30 174-203 20-49 (200)
244 1zuh_A Shikimate kinase; alpha 80.3 1.1 3.7E-05 38.6 3.3 26 178-203 6-31 (168)
245 1knq_A Gluconate kinase; ALFA/ 80.3 1.2 4.1E-05 38.5 3.7 25 179-203 8-32 (175)
246 1xjc_A MOBB protein homolog; s 80.3 1.2 4E-05 38.6 3.4 26 178-203 3-28 (169)
247 3t61_A Gluconokinase; PSI-biol 80.0 0.88 3E-05 40.6 2.7 25 179-203 18-42 (202)
248 4eun_A Thermoresistant glucoki 80.0 1.1 3.8E-05 39.9 3.4 27 177-203 27-53 (200)
249 1iy2_A ATP-dependent metallopr 80.0 1.8 6.3E-05 40.8 5.1 46 158-203 40-97 (278)
250 3trf_A Shikimate kinase, SK; a 79.9 1.1 3.9E-05 39.1 3.4 25 179-203 5-29 (185)
251 2bdt_A BH3686; alpha-beta prot 79.9 1.2 4.1E-05 39.2 3.5 23 180-202 3-25 (189)
252 1ye8_A Protein THEP1, hypothet 79.8 1.2 4.1E-05 38.9 3.5 23 181-203 2-24 (178)
253 2r44_A Uncharacterized protein 79.7 1.4 4.7E-05 42.9 4.2 44 158-203 27-70 (331)
254 3tr0_A Guanylate kinase, GMP k 79.5 1.1 3.9E-05 39.8 3.3 24 180-203 8-31 (205)
255 2if2_A Dephospho-COA kinase; a 79.5 1.2 4E-05 39.8 3.4 22 180-201 2-23 (204)
256 1ly1_A Polynucleotide kinase; 79.4 1.3 4.3E-05 38.5 3.5 22 180-201 3-24 (181)
257 3asz_A Uridine kinase; cytidin 79.3 1.3 4.4E-05 39.8 3.6 26 178-203 5-30 (211)
258 1kht_A Adenylate kinase; phosp 79.2 1.2 4.2E-05 39.0 3.4 24 180-203 4-27 (192)
259 2yvu_A Probable adenylyl-sulfa 78.9 1.4 4.9E-05 38.5 3.7 26 178-203 12-37 (186)
260 4b4t_K 26S protease regulatory 78.7 2 6.9E-05 43.3 5.1 46 158-203 172-230 (428)
261 3iij_A Coilin-interacting nucl 78.6 1.1 3.7E-05 39.1 2.8 25 179-203 11-35 (180)
262 3p32_A Probable GTPase RV1496/ 78.4 2.7 9.3E-05 41.3 5.9 38 166-203 64-103 (355)
263 3a00_A Guanylate kinase, GMP k 78.3 1.1 3.6E-05 39.5 2.6 24 180-203 2-25 (186)
264 2j41_A Guanylate kinase; GMP, 78.3 1.3 4.3E-05 39.6 3.2 24 180-203 7-30 (207)
265 2rhm_A Putative kinase; P-loop 78.1 1.6 5.4E-05 38.4 3.8 25 179-203 5-29 (193)
266 1uf9_A TT1252 protein; P-loop, 78.1 1.7 5.7E-05 38.6 3.9 26 177-202 6-31 (203)
267 1cke_A CK, MSSA, protein (cyti 77.8 1.4 4.9E-05 40.0 3.5 24 180-203 6-29 (227)
268 4b4t_L 26S protease subunit RP 77.8 2.7 9.4E-05 42.4 5.7 46 158-203 181-239 (437)
269 2qt1_A Nicotinamide riboside k 77.6 1.4 4.7E-05 39.4 3.3 26 178-203 20-45 (207)
270 3mtu_A Tropomyosin alpha-1 cha 77.4 6 0.0002 28.7 5.9 17 70-86 53-69 (75)
271 2qor_A Guanylate kinase; phosp 77.3 1.2 4E-05 39.9 2.7 25 179-203 12-36 (204)
272 2bbw_A Adenylate kinase 4, AK4 77.3 1.5 5.3E-05 40.4 3.6 26 178-203 26-51 (246)
273 2c9o_A RUVB-like 1; hexameric 76.8 2.8 9.6E-05 42.8 5.7 46 158-203 37-87 (456)
274 1lvg_A Guanylate kinase, GMP k 76.6 1.3 4.3E-05 39.5 2.6 24 180-203 5-28 (198)
275 1um8_A ATP-dependent CLP prote 76.5 2.6 8.8E-05 41.8 5.2 46 158-203 21-96 (376)
276 1ukz_A Uridylate kinase; trans 76.5 1.8 6.3E-05 38.4 3.7 26 178-203 14-39 (203)
277 4b4t_M 26S protease regulatory 76.5 2.4 8.3E-05 42.7 4.9 46 158-203 181-239 (434)
278 1jjv_A Dephospho-COA kinase; P 76.4 1.5 5.2E-05 39.1 3.2 22 180-201 3-24 (206)
279 3aez_A Pantothenate kinase; tr 76.4 1.6 5.5E-05 42.0 3.5 27 177-203 88-114 (312)
280 1gtv_A TMK, thymidylate kinase 76.3 1.2 4E-05 40.1 2.4 23 181-203 2-24 (214)
281 1htw_A HI0065; nucleotide-bind 76.2 1.9 6.4E-05 36.8 3.5 27 177-203 31-57 (158)
282 3end_A Light-independent proto 76.2 1.5 5.3E-05 42.0 3.4 29 175-203 37-65 (307)
283 1znw_A Guanylate kinase, GMP k 76.1 1.6 5.6E-05 39.0 3.3 25 179-203 20-44 (207)
284 1tev_A UMP-CMP kinase; ploop, 76.0 1.9 6.5E-05 37.9 3.7 24 180-203 4-27 (196)
285 2c95_A Adenylate kinase 1; tra 76.0 1.8 6.1E-05 38.2 3.5 25 179-203 9-33 (196)
286 4gp7_A Metallophosphoesterase; 75.9 1.5 5E-05 38.0 2.8 22 179-200 9-30 (171)
287 3cm0_A Adenylate kinase; ATP-b 75.9 1.9 6.6E-05 37.6 3.7 24 180-203 5-28 (186)
288 1y63_A LMAJ004144AAA protein; 75.7 1.8 6E-05 38.0 3.3 24 179-202 10-33 (184)
289 3hu3_A Transitional endoplasmi 75.7 2.6 9E-05 43.4 5.1 46 158-203 204-262 (489)
290 2plr_A DTMP kinase, probable t 75.7 1.9 6.5E-05 38.5 3.7 24 180-203 5-28 (213)
291 3hws_A ATP-dependent CLP prote 75.6 2.6 8.9E-05 41.6 4.9 45 159-203 16-75 (363)
292 2pt5_A Shikimate kinase, SK; a 75.6 1.9 6.4E-05 36.9 3.4 23 181-203 2-24 (168)
293 2pbr_A DTMP kinase, thymidylat 75.6 1.8 6.3E-05 37.9 3.5 23 181-203 2-24 (195)
294 3tau_A Guanylate kinase, GMP k 75.5 1.7 5.8E-05 39.0 3.2 26 178-203 7-32 (208)
295 2bwj_A Adenylate kinase 5; pho 75.5 1.9 6.4E-05 38.1 3.5 25 179-203 12-36 (199)
296 1np6_A Molybdopterin-guanine d 75.5 1.9 6.6E-05 37.4 3.4 25 179-203 6-30 (174)
297 1qf9_A UMP/CMP kinase, protein 75.4 2.1 7.1E-05 37.5 3.8 25 179-203 6-30 (194)
298 2grj_A Dephospho-COA kinase; T 75.3 2 7E-05 38.0 3.6 27 177-203 10-36 (192)
299 1g8p_A Magnesium-chelatase 38 75.3 1.7 5.7E-05 42.5 3.4 46 158-203 24-69 (350)
300 4e22_A Cytidylate kinase; P-lo 74.9 1.9 6.4E-05 40.1 3.4 26 178-203 26-51 (252)
301 3tqc_A Pantothenate kinase; bi 74.8 3.5 0.00012 39.8 5.4 26 178-203 91-116 (321)
302 4b4t_H 26S protease regulatory 74.7 3.2 0.00011 42.0 5.2 46 158-203 209-267 (467)
303 2ze6_A Isopentenyl transferase 74.7 2.1 7.1E-05 39.8 3.7 24 180-203 2-25 (253)
304 1via_A Shikimate kinase; struc 74.6 1.9 6.5E-05 37.3 3.2 23 181-203 6-28 (175)
305 1e6c_A Shikimate kinase; phosp 74.4 1.6 5.6E-05 37.5 2.8 24 180-203 3-26 (173)
306 2iyv_A Shikimate kinase, SK; t 74.4 1.5 5.3E-05 38.2 2.6 23 181-203 4-26 (184)
307 2f1r_A Molybdopterin-guanine d 74.3 1.3 4.5E-05 38.4 2.0 25 179-203 2-26 (171)
308 2ce7_A Cell division protein F 74.2 3.1 0.00011 42.6 5.1 46 158-203 16-73 (476)
309 1g41_A Heat shock protein HSLU 74.2 2.4 8.3E-05 42.8 4.2 46 158-203 15-74 (444)
310 1ypw_A Transitional endoplasmi 74.0 1.8 6.1E-05 47.8 3.5 46 158-203 204-262 (806)
311 2i3b_A HCR-ntpase, human cance 74.0 1.8 6.1E-05 38.2 2.9 23 181-203 3-25 (189)
312 1z6g_A Guanylate kinase; struc 73.9 1.6 5.5E-05 39.5 2.6 24 180-203 24-47 (218)
313 2p5t_B PEZT; postsegregational 73.8 3.6 0.00012 38.1 5.1 40 164-203 12-56 (253)
314 2jeo_A Uridine-cytidine kinase 73.8 2 6.8E-05 39.7 3.3 26 178-203 24-49 (245)
315 1gvn_B Zeta; postsegregational 73.5 4.3 0.00015 38.5 5.7 26 178-203 32-57 (287)
316 2pez_A Bifunctional 3'-phospho 73.5 2.4 8.4E-05 36.7 3.7 24 180-203 6-29 (179)
317 4b4t_J 26S protease regulatory 73.5 3.2 0.00011 41.3 4.8 46 158-203 148-206 (405)
318 1l8q_A Chromosomal replication 73.4 3.3 0.00011 40.0 4.9 37 167-203 23-61 (324)
319 2wwf_A Thymidilate kinase, put 73.4 2.2 7.6E-05 38.1 3.5 25 179-203 10-34 (212)
320 2vli_A Antibiotic resistance p 73.2 1.7 5.8E-05 37.8 2.5 24 180-203 6-29 (183)
321 3a4m_A L-seryl-tRNA(SEC) kinas 73.2 2.5 8.4E-05 39.5 3.8 25 179-203 4-28 (260)
322 2z0h_A DTMP kinase, thymidylat 73.0 2.3 7.9E-05 37.4 3.5 23 181-203 2-24 (197)
323 2cdn_A Adenylate kinase; phosp 73.0 2.3 7.9E-05 37.7 3.5 25 179-203 20-44 (201)
324 3ney_A 55 kDa erythrocyte memb 72.9 2.3 7.9E-05 37.7 3.3 26 178-203 18-43 (197)
325 1rj9_A FTSY, signal recognitio 72.8 2.1 7.2E-05 41.0 3.3 26 178-203 101-126 (304)
326 1yrb_A ATP(GTP)binding protein 72.7 2.2 7.5E-05 39.7 3.4 26 178-203 13-38 (262)
327 1s96_A Guanylate kinase, GMP k 72.7 2.2 7.5E-05 38.7 3.2 25 179-203 16-40 (219)
328 2px0_A Flagellar biosynthesis 72.7 2.2 7.5E-05 40.8 3.4 26 178-203 104-129 (296)
329 1m7g_A Adenylylsulfate kinase; 72.7 2.5 8.7E-05 37.9 3.7 27 177-203 23-49 (211)
330 1nn5_A Similar to deoxythymidy 72.6 2.5 8.4E-05 37.9 3.6 25 179-203 9-33 (215)
331 3nbx_X ATPase RAVA; AAA+ ATPas 72.5 2.9 0.0001 43.1 4.5 44 158-203 22-65 (500)
332 2pcj_A ABC transporter, lipopr 72.4 2.1 7.2E-05 38.9 3.0 24 180-203 31-54 (224)
333 3b9q_A Chloroplast SRP recepto 72.2 2.4 8.2E-05 40.6 3.5 25 179-203 100-124 (302)
334 2onk_A Molybdate/tungstate ABC 72.0 2.2 7.6E-05 39.3 3.1 26 177-203 23-48 (240)
335 3b85_A Phosphate starvation-in 72.0 2.1 7.1E-05 38.5 2.9 32 169-202 14-45 (208)
336 3e70_C DPA, signal recognition 71.9 4.1 0.00014 39.5 5.1 27 177-203 127-153 (328)
337 1oix_A RAS-related protein RAB 71.7 2.5 8.7E-05 37.1 3.4 26 178-203 28-53 (191)
338 1cp2_A CP2, nitrogenase iron p 71.7 2.3 8E-05 39.7 3.3 24 180-203 2-25 (269)
339 3tif_A Uncharacterized ABC tra 71.6 2.2 7.4E-05 39.2 3.0 25 179-203 31-55 (235)
340 2f6r_A COA synthase, bifunctio 71.5 2.5 8.5E-05 40.0 3.4 23 178-200 74-96 (281)
341 2yhs_A FTSY, cell division pro 71.2 5.2 0.00018 41.0 5.8 26 178-203 292-317 (503)
342 1sq5_A Pantothenate kinase; P- 71.1 2.7 9.1E-05 40.4 3.6 26 178-203 79-104 (308)
343 3nwj_A ATSK2; P loop, shikimat 71.1 2.2 7.4E-05 39.6 2.8 25 179-203 48-72 (250)
344 2v54_A DTMP kinase, thymidylat 71.0 2.4 8.3E-05 37.5 3.1 24 180-203 5-28 (204)
345 1zd8_A GTP:AMP phosphotransfer 71.0 2.7 9.2E-05 38.2 3.5 24 180-203 8-31 (227)
346 2dhr_A FTSH; AAA+ protein, hex 70.9 4.5 0.00015 41.7 5.4 46 158-203 31-88 (499)
347 2afh_E Nitrogenase iron protei 70.9 2.6 8.8E-05 40.0 3.4 25 179-203 2-26 (289)
348 4b4t_I 26S protease regulatory 70.8 4.1 0.00014 40.8 4.9 46 158-203 182-240 (437)
349 1vht_A Dephospho-COA kinase; s 70.7 2.8 9.6E-05 37.7 3.5 22 180-201 5-26 (218)
350 2cbz_A Multidrug resistance-as 70.6 2.4 8.1E-05 39.0 3.0 25 179-203 31-55 (237)
351 1b0u_A Histidine permease; ABC 70.2 2.4 8.2E-05 39.6 2.9 26 178-203 31-56 (262)
352 2d2e_A SUFC protein; ABC-ATPas 70.2 2.6 8.7E-05 39.1 3.1 23 180-202 30-52 (250)
353 1nij_A Hypothetical protein YJ 70.0 2.6 8.7E-05 40.8 3.2 25 178-202 3-27 (318)
354 2dyk_A GTP-binding protein; GT 70.0 3 0.0001 35.0 3.3 24 180-203 2-25 (161)
355 3ake_A Cytidylate kinase; CMP 69.8 3 0.0001 37.0 3.5 23 181-203 4-26 (208)
356 1ji0_A ABC transporter; ATP bi 69.7 2.5 8.6E-05 38.9 3.0 24 180-203 33-56 (240)
357 2z4s_A Chromosomal replication 69.6 5.3 0.00018 40.5 5.6 36 168-203 118-154 (440)
358 3sop_A Neuronal-specific septi 69.5 3 0.0001 39.2 3.4 23 181-203 4-26 (270)
359 2zu0_C Probable ATP-dependent 69.2 2.7 9.3E-05 39.4 3.1 25 178-202 45-69 (267)
360 1g6h_A High-affinity branched- 69.2 2.6 8.9E-05 39.3 3.0 24 180-203 34-57 (257)
361 3fb4_A Adenylate kinase; psych 69.1 3.2 0.00011 37.3 3.5 23 181-203 2-24 (216)
362 1aky_A Adenylate kinase; ATP:A 69.1 3.1 0.00011 37.5 3.5 24 180-203 5-28 (220)
363 2olj_A Amino acid ABC transpor 69.0 2.6 9.1E-05 39.4 2.9 26 178-203 49-74 (263)
364 3k1j_A LON protease, ATP-depen 69.0 3.6 0.00012 43.8 4.3 44 158-203 41-84 (604)
365 2xxa_A Signal recognition part 68.9 5.8 0.0002 40.1 5.7 38 166-203 78-124 (433)
366 2pze_A Cystic fibrosis transme 68.9 2.7 9.3E-05 38.4 2.9 24 180-203 35-58 (229)
367 1mv5_A LMRA, multidrug resista 68.7 2.9 9.9E-05 38.5 3.2 26 178-203 27-52 (243)
368 3gfo_A Cobalt import ATP-bindi 68.7 2.7 9.2E-05 39.6 2.9 24 180-203 35-58 (275)
369 4a74_A DNA repair and recombin 68.6 3.2 0.00011 37.5 3.4 26 178-203 24-49 (231)
370 2wji_A Ferrous iron transport 68.6 3.1 0.00011 35.4 3.2 23 180-202 4-26 (165)
371 2og2_A Putative signal recogni 68.5 3.3 0.00011 40.6 3.7 25 179-203 157-181 (359)
372 2f9l_A RAB11B, member RAS onco 68.4 3.1 0.00011 36.7 3.2 25 179-203 5-29 (199)
373 2ce2_X GTPase HRAS; signaling 68.3 3 0.0001 35.1 3.0 23 181-203 5-27 (166)
374 4g1u_C Hemin import ATP-bindin 68.2 2.8 9.6E-05 39.3 3.0 25 179-203 37-61 (266)
375 2ff7_A Alpha-hemolysin translo 68.2 2.8 9.7E-05 38.7 3.0 24 180-203 36-59 (247)
376 1vpl_A ABC transporter, ATP-bi 68.2 2.8 9.7E-05 39.0 2.9 25 179-203 41-65 (256)
377 1zj6_A ADP-ribosylation factor 67.9 5.8 0.0002 34.3 4.9 34 168-202 6-39 (187)
378 1sgw_A Putative ABC transporte 67.8 2.4 8.4E-05 38.2 2.4 24 180-203 36-59 (214)
379 2qi9_C Vitamin B12 import ATP- 67.8 2.9 0.0001 38.7 2.9 24 180-203 27-50 (249)
380 2ehv_A Hypothetical protein PH 67.8 3 0.0001 38.3 3.0 23 179-201 30-52 (251)
381 3dl0_A Adenylate kinase; phosp 67.6 3.4 0.00012 37.1 3.4 23 181-203 2-24 (216)
382 4gzl_A RAS-related C3 botulinu 67.4 3.6 0.00012 36.5 3.4 32 172-203 23-54 (204)
383 3lnc_A Guanylate kinase, GMP k 67.4 2.1 7.2E-05 39.0 1.9 24 180-203 28-52 (231)
384 2ixe_A Antigen peptide transpo 67.3 3 0.0001 39.2 3.0 26 178-203 44-69 (271)
385 2ghi_A Transport protein; mult 67.3 3 0.0001 38.9 3.0 25 179-203 46-70 (260)
386 2yz2_A Putative ABC transporte 67.2 3 0.0001 39.1 3.0 25 179-203 33-57 (266)
387 3d3q_A TRNA delta(2)-isopenten 67.1 3.8 0.00013 39.8 3.7 24 180-203 8-31 (340)
388 3tlx_A Adenylate kinase 2; str 66.8 7.6 0.00026 35.6 5.6 27 177-203 27-53 (243)
389 3m6a_A ATP-dependent protease 66.6 3.2 0.00011 43.5 3.3 46 158-203 81-132 (543)
390 2ihy_A ABC transporter, ATP-bi 66.6 3.1 0.00011 39.2 2.9 25 179-203 47-71 (279)
391 2nq2_C Hypothetical ABC transp 66.6 3.2 0.00011 38.5 3.0 24 180-203 32-55 (253)
392 3con_A GTPase NRAS; structural 66.6 3.2 0.00011 36.2 2.9 24 180-203 22-45 (190)
393 2zej_A Dardarin, leucine-rich 66.5 3 0.0001 36.3 2.7 21 181-201 4-24 (184)
394 3dm5_A SRP54, signal recogniti 66.4 6.9 0.00024 39.5 5.5 26 178-203 99-124 (443)
395 1zu4_A FTSY; GTPase, signal re 66.3 3.9 0.00013 39.5 3.6 26 178-203 104-129 (320)
396 1vma_A Cell division protein F 66.3 4 0.00014 39.1 3.7 26 178-203 103-128 (306)
397 1zak_A Adenylate kinase; ATP:A 66.3 3.7 0.00013 37.0 3.3 24 180-203 6-29 (222)
398 3t1o_A Gliding protein MGLA; G 66.1 3.4 0.00012 36.1 3.0 25 179-203 14-38 (198)
399 1fzq_A ADP-ribosylation factor 66.0 4.9 0.00017 34.7 4.0 25 177-201 14-38 (181)
400 3r20_A Cytidylate kinase; stru 65.7 4.1 0.00014 37.2 3.5 25 179-203 9-33 (233)
401 2wjg_A FEOB, ferrous iron tran 65.6 3.5 0.00012 35.7 3.0 23 180-202 8-30 (188)
402 1ex7_A Guanylate kinase; subst 65.6 3.4 0.00012 36.2 2.8 23 181-203 3-25 (186)
403 1e4v_A Adenylate kinase; trans 65.6 4.2 0.00015 36.4 3.6 23 181-203 2-24 (214)
404 1z2a_A RAS-related protein RAB 65.5 3.7 0.00013 34.6 3.0 25 179-203 5-29 (168)
405 3be4_A Adenylate kinase; malar 65.4 4.3 0.00015 36.5 3.5 24 180-203 6-29 (217)
406 2e87_A Hypothetical protein PH 65.4 85 0.0029 30.4 13.3 25 178-202 166-190 (357)
407 2vp4_A Deoxynucleoside kinase; 65.3 2.7 9.1E-05 38.4 2.1 25 178-202 19-43 (230)
408 1ls1_A Signal recognition part 65.3 3.8 0.00013 39.0 3.3 25 179-203 98-122 (295)
409 2ocp_A DGK, deoxyguanosine kin 65.2 4.7 0.00016 37.0 3.8 24 180-203 3-26 (241)
410 1f6b_A SAR1; gtpases, N-termin 65.2 6.1 0.00021 34.8 4.5 32 170-201 15-47 (198)
411 1a7j_A Phosphoribulokinase; tr 65.0 2.8 9.5E-05 39.9 2.3 26 178-203 4-29 (290)
412 2xb4_A Adenylate kinase; ATP-b 64.9 4.3 0.00015 36.7 3.5 23 181-203 2-24 (223)
413 3a7p_A Autophagy protein 16; c 64.5 55 0.0019 27.1 9.4 51 33-86 96-146 (152)
414 1u8z_A RAS-related protein RAL 64.3 3.8 0.00013 34.5 2.9 24 180-203 5-28 (168)
415 2j37_W Signal recognition part 64.3 7.7 0.00026 40.0 5.5 26 178-203 100-125 (504)
416 3t15_A Ribulose bisphosphate c 64.0 4.2 0.00014 38.7 3.4 25 179-203 36-60 (293)
417 3pxi_A Negative regulator of g 63.9 5.5 0.00019 43.7 4.7 47 158-204 491-546 (758)
418 2ged_A SR-beta, signal recogni 63.8 4.2 0.00014 35.5 3.1 26 178-203 47-72 (193)
419 1c1y_A RAS-related protein RAP 63.8 4.2 0.00014 34.2 3.0 23 181-203 5-27 (167)
420 2pjz_A Hypothetical protein ST 63.6 3.9 0.00013 38.2 2.9 23 180-202 31-53 (263)
421 2eyu_A Twitching motility prot 63.6 4.6 0.00016 37.6 3.5 28 176-203 22-49 (261)
422 1moz_A ARL1, ADP-ribosylation 63.5 5.1 0.00017 34.4 3.6 31 170-200 8-39 (183)
423 1p9r_A General secretion pathw 63.4 8.2 0.00028 38.7 5.4 43 161-203 149-191 (418)
424 4eaq_A DTMP kinase, thymidylat 63.1 5.2 0.00018 36.4 3.7 25 179-203 26-50 (229)
425 2gj8_A MNME, tRNA modification 63.1 4.1 0.00014 35.0 2.8 23 180-202 5-27 (172)
426 2fn4_A P23, RAS-related protei 63.0 4.2 0.00014 34.8 3.0 26 178-203 8-33 (181)
427 3kl4_A SRP54, signal recogniti 62.9 8.2 0.00028 38.9 5.3 26 178-203 96-121 (433)
428 2bbs_A Cystic fibrosis transme 62.9 4.2 0.00014 38.6 3.0 25 179-203 64-88 (290)
429 1q3t_A Cytidylate kinase; nucl 62.8 4.9 0.00017 36.7 3.5 26 178-203 15-40 (236)
430 2qgz_A Helicase loader, putati 62.7 8.4 0.00029 36.9 5.2 40 164-203 134-176 (308)
431 1ak2_A Adenylate kinase isoenz 62.5 5 0.00017 36.5 3.5 25 179-203 16-40 (233)
432 1r8s_A ADP-ribosylation factor 62.5 4.8 0.00016 33.8 3.2 22 182-203 3-24 (164)
433 1z08_A RAS-related protein RAB 62.4 4.3 0.00015 34.4 2.8 24 180-203 7-30 (170)
434 1m7b_A RND3/RHOE small GTP-bin 62.2 4.5 0.00015 35.0 3.0 25 179-203 7-31 (184)
435 3q72_A GTP-binding protein RAD 62.0 4.4 0.00015 34.2 2.8 21 181-201 4-24 (166)
436 1z0j_A RAB-22, RAS-related pro 61.9 4.5 0.00015 34.2 2.9 24 180-203 7-30 (170)
437 2erx_A GTP-binding protein DI- 61.8 4.3 0.00015 34.4 2.7 22 181-202 5-26 (172)
438 3q85_A GTP-binding protein REM 61.7 5.3 0.00018 33.7 3.3 22 180-201 3-24 (169)
439 1ek0_A Protein (GTP-binding pr 61.6 4.5 0.00016 34.1 2.9 23 181-203 5-27 (170)
440 3ihw_A Centg3; RAS, centaurin, 61.5 4.5 0.00016 35.1 2.9 24 179-202 20-43 (184)
441 2v9p_A Replication protein E1; 61.3 5.1 0.00017 38.3 3.3 27 177-203 124-150 (305)
442 3tui_C Methionine import ATP-b 61.2 4.7 0.00016 39.6 3.1 26 178-203 53-78 (366)
443 3llu_A RAS-related GTP-binding 61.1 3.9 0.00013 35.9 2.4 24 179-202 20-43 (196)
444 3fvq_A Fe(3+) IONS import ATP- 61.1 4.9 0.00017 39.4 3.2 25 179-203 30-54 (359)
445 1svi_A GTP-binding protein YSX 61.0 5 0.00017 35.0 3.1 26 177-202 21-46 (195)
446 3nh6_A ATP-binding cassette SU 61.0 3.7 0.00012 39.3 2.3 26 178-203 79-104 (306)
447 1j8m_F SRP54, signal recogniti 60.9 5.3 0.00018 38.0 3.4 25 179-203 98-122 (297)
448 3c5c_A RAS-like protein 12; GD 60.9 4.7 0.00016 35.1 2.9 25 179-203 21-45 (187)
449 2nzj_A GTP-binding protein REM 60.9 4.5 0.00015 34.4 2.7 24 179-202 4-27 (175)
450 1kao_A RAP2A; GTP-binding prot 60.4 5.2 0.00018 33.5 3.0 23 181-203 5-27 (167)
451 1z47_A CYSA, putative ABC-tran 60.4 5 0.00017 39.3 3.1 25 179-203 41-65 (355)
452 1ky3_A GTP-binding protein YPT 60.4 4.9 0.00017 34.4 2.9 26 178-203 7-32 (182)
453 3geh_A MNME, tRNA modification 60.3 54 0.0018 33.2 11.0 87 67-203 162-248 (462)
454 1z0f_A RAB14, member RAS oncog 60.3 4.9 0.00017 34.3 2.9 26 178-203 14-39 (179)
455 2qnr_A Septin-2, protein NEDD5 60.1 4.7 0.00016 38.5 2.9 24 178-202 18-41 (301)
456 2hxs_A RAB-26, RAS-related pro 60.0 5.2 0.00018 34.1 3.0 24 180-203 7-30 (178)
457 2cvh_A DNA repair and recombin 60.0 5 0.00017 35.9 2.9 23 179-201 20-42 (220)
458 3io3_A DEHA2D07832P; chaperone 59.9 5.3 0.00018 39.0 3.3 30 174-203 13-42 (348)
459 3kta_A Chromosome segregation 59.9 5.7 0.00019 34.3 3.2 24 180-203 27-50 (182)
460 1wms_A RAB-9, RAB9, RAS-relate 59.9 5 0.00017 34.2 2.9 25 179-203 7-31 (177)
461 2w0m_A SSO2452; RECA, SSPF, un 59.8 5.7 0.0002 35.8 3.4 24 180-203 24-47 (235)
462 3kkq_A RAS-related protein M-R 59.8 5.1 0.00017 34.5 2.9 26 178-203 17-42 (183)
463 1r2q_A RAS-related protein RAB 59.8 5.5 0.00019 33.6 3.0 24 180-203 7-30 (170)
464 1tq4_A IIGP1, interferon-induc 59.7 7.7 0.00026 38.8 4.5 26 178-203 68-93 (413)
465 2v3c_C SRP54, signal recogniti 59.6 4.4 0.00015 40.9 2.7 25 179-203 99-123 (432)
466 2yv5_A YJEQ protein; hydrolase 59.5 7.8 0.00027 37.0 4.3 33 167-203 156-188 (302)
467 2www_A Methylmalonic aciduria 59.5 5.5 0.00019 39.0 3.3 26 178-203 73-98 (349)
468 3dz8_A RAS-related protein RAB 59.5 5.9 0.0002 34.5 3.3 25 179-203 23-47 (191)
469 2lkc_A Translation initiation 59.4 5.9 0.0002 33.8 3.2 25 178-202 7-31 (178)
470 1upt_A ARL1, ADP-ribosylation 59.3 5.3 0.00018 33.8 2.9 24 180-203 8-31 (171)
471 1m2o_B GTP-binding protein SAR 59.3 5.7 0.0002 34.7 3.1 23 180-202 24-46 (190)
472 2bme_A RAB4A, RAS-related prot 59.3 5.4 0.00018 34.4 3.0 25 179-203 10-34 (186)
473 2b6h_A ADP-ribosylation factor 59.1 4.8 0.00016 35.3 2.6 26 175-200 25-50 (192)
474 4dsu_A GTPase KRAS, isoform 2B 59.0 5.3 0.00018 34.5 2.9 23 181-203 6-28 (189)
475 2iwr_A Centaurin gamma 1; ANK 59.0 4.6 0.00016 34.6 2.4 24 180-203 8-31 (178)
476 3crm_A TRNA delta(2)-isopenten 59.0 6.4 0.00022 37.9 3.6 24 180-203 6-29 (323)
477 2yyz_A Sugar ABC transporter, 59.0 5.4 0.00018 39.1 3.1 25 179-203 29-53 (359)
478 1g16_A RAS-related protein SEC 58.9 6.9 0.00023 33.0 3.5 24 180-203 4-27 (170)
479 3kjh_A CO dehydrogenase/acetyl 58.8 4.3 0.00015 37.2 2.3 22 182-203 3-24 (254)
480 2oil_A CATX-8, RAS-related pro 58.8 5.3 0.00018 34.8 2.8 26 178-203 24-49 (193)
481 2it1_A 362AA long hypothetical 58.8 5.5 0.00019 39.1 3.1 25 179-203 29-53 (362)
482 3t5g_A GTP-binding protein RHE 58.6 5.6 0.00019 34.1 3.0 25 179-203 6-30 (181)
483 2obl_A ESCN; ATPase, hydrolase 58.5 6 0.0002 38.6 3.4 34 170-203 61-95 (347)
484 2cxx_A Probable GTP-binding pr 58.5 4.8 0.00016 34.8 2.5 22 181-202 3-24 (190)
485 1g29_1 MALK, maltose transport 58.5 5.5 0.00019 39.3 3.1 24 180-203 30-53 (372)
486 3cf2_A TER ATPase, transitiona 58.5 6.8 0.00023 42.9 4.1 46 158-203 204-262 (806)
487 3pqc_A Probable GTP-binding pr 58.5 6 0.0002 34.3 3.1 25 179-203 23-47 (195)
488 1ksh_A ARF-like protein 2; sma 58.4 6.5 0.00022 33.9 3.4 26 177-202 16-41 (186)
489 3tw8_B RAS-related protein RAB 58.4 5.2 0.00018 34.2 2.7 25 178-202 8-32 (181)
490 3oes_A GTPase rhebl1; small GT 58.4 6 0.0002 34.8 3.1 26 178-203 23-48 (201)
491 4dzz_A Plasmid partitioning pr 58.4 5.3 0.00018 35.3 2.8 24 180-203 2-26 (206)
492 3bwd_D RAC-like GTP-binding pr 58.3 5.6 0.00019 34.1 2.9 23 180-202 9-31 (182)
493 3cbq_A GTP-binding protein REM 58.2 4.4 0.00015 35.6 2.2 23 178-200 22-44 (195)
494 2a9k_A RAS-related protein RAL 58.2 5.6 0.00019 34.2 2.9 25 179-203 18-42 (187)
495 1v43_A Sugar-binding transport 58.2 5.6 0.00019 39.2 3.1 26 178-203 36-61 (372)
496 2fg5_A RAB-22B, RAS-related pr 58.1 5.7 0.0002 34.6 2.9 25 179-203 23-47 (192)
497 4hlc_A DTMP kinase, thymidylat 58.1 7.4 0.00025 34.7 3.7 24 180-203 3-26 (205)
498 1mh1_A RAC1; GTP-binding, GTPa 58.0 5.6 0.00019 34.2 2.9 22 181-202 7-28 (186)
499 1vg8_A RAS-related protein RAB 58.0 5.5 0.00019 35.1 2.9 26 178-203 7-32 (207)
500 1nrj_B SR-beta, signal recogni 57.9 6.5 0.00022 35.0 3.4 27 177-203 10-36 (218)
No 1
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=1.5e-25 Score=231.07 Aligned_cols=288 Identities=14% Similarity=0.159 Sum_probs=201.4
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccC-chHHhhhhcCcEEEccCCcccccch-hhhccCc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLP-LAMSELGSSLELLDISYASITELPE-ELKLLVN 295 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp-~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~ 295 (594)
.+++++.|++ .++.++.+|..+|..+++|++|++++| .+ ..+| ..+..+. +|++|++++|.++.+|. .++++++
T Consensus 43 ~l~~l~~l~l-~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i-~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 43 TLNNQKIVTF-KNSTMRKLPAALLDSFRQVELLNLNDL-QI-EEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp GGCCCSEEEE-ESCEESEECTHHHHHCCCCSEEECTTS-CC-CEECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccCCceEEEe-cCCchhhCChhHhcccccCcEEECCCC-cc-cccChhhccCCC-CcCEEECCCCCCCcCCHHHhcCCCC
Confidence 4578888888 777788888887888888888888888 88 6664 4788888 88888888888888765 5788888
Q ss_pred CcEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHH
Q 007656 296 LKCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQI 375 (594)
Q Consensus 296 L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 375 (594)
|++|++++| .+..+|.+.+.++++|++|++++|.+... .+..+..+++|+.|+++.+....+.
T Consensus 119 L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~---------------~~~~~~~l~~L~~L~l~~n~l~~~~- 181 (390)
T 3o6n_A 119 LTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERI---------------EDDTFQATTSLQNLQLSSNRLTHVD- 181 (390)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBC---------------CTTTTSSCTTCCEEECCSSCCSBCC-
T ss_pred CCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCcc---------------ChhhccCCCCCCEEECCCCcCCccc-
Confidence 888888888 78888877668888888888888877652 2333677788888888776654331
Q ss_pred HhcCchhhhcceeEEEEeCCCcccccccc---------------cccCccCCceEEecccCCceeeeecccccccccCCC
Q 007656 376 LLSSNKLKSCIRSLYLHLTGDTASIIDAT---------------VFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREP 440 (594)
Q Consensus 376 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~---------------~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~ 440 (594)
...+++|+.|+++.+.... ++... .....++|+.|++++|.... ..++
T Consensus 182 ----~~~l~~L~~L~l~~n~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~---~~~l--------- 244 (390)
T 3o6n_A 182 ----LSLIPSLFHANVSYNLLST-LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD---TAWL--------- 244 (390)
T ss_dssp ----GGGCTTCSEEECCSSCCSE-EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC---CGGG---------
T ss_pred ----cccccccceeecccccccc-cCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc---cHHH---------
Confidence 1223355555553333222 10000 11123466666666654433 1232
Q ss_pred ccCCCcceEeEecCCCCccc-c-ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccc
Q 007656 441 FVFRSLHCVRIEQCHKLKDV-T-FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKS 518 (594)
Q Consensus 441 ~~~~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~ 518 (594)
..+++|+.|++++| .+..+ | .+..+++|++|+|++| .++.++. ....+|+|+.|++++| .+..
T Consensus 245 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~------------~~~~l~~L~~L~L~~n-~l~~ 309 (390)
T 3o6n_A 245 LNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-RLVALNL------------YGQPIPTLKVLDLSHN-HLLH 309 (390)
T ss_dssp GGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSS-CCCEEEC------------SSSCCTTCCEEECCSS-CCCC
T ss_pred cCCCCccEEECCCC-cCCCcChhHccccccCCEEECCCC-cCcccCc------------ccCCCCCCCEEECCCC-ccee
Confidence 36778888888885 44443 3 5777888888888887 4554432 4567899999999998 6778
Q ss_pred cCCCCccCCCccEEeecccCCCCCCCCCCcCCcCcceEEEcc
Q 007656 519 IYWKPLPFTHLKEISVGYCRNLKKLPLDSNSAKERKFVIRGE 560 (594)
Q Consensus 519 l~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~L~~l~I~~~ 560 (594)
++.....+++|+.|++++|+ ++.+|.. ..++|+.++++++
T Consensus 310 ~~~~~~~l~~L~~L~L~~N~-i~~~~~~-~~~~L~~L~l~~N 349 (390)
T 3o6n_A 310 VERNQPQFDRLENLYLDHNS-IVTLKLS-THHTLKNLTLSHN 349 (390)
T ss_dssp CGGGHHHHTTCSEEECCSSC-CCCCCCC-TTCCCSEEECCSS
T ss_pred cCccccccCcCCEEECCCCc-cceeCch-hhccCCEEEcCCC
Confidence 77766678999999999875 7888743 4478999999854
No 2
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=7.5e-25 Score=232.06 Aligned_cols=291 Identities=19% Similarity=0.173 Sum_probs=235.1
Q ss_pred CCcccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccccch-hhhccCcCc
Q 007656 220 PHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITELPE-ELKLLVNLK 297 (594)
Q Consensus 220 ~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L~ 297 (594)
++++.|+| +++.++.++...|.++++|++|+|++| .+ ..+ |..+..+. +|++|++++|.++.+|. .+.++++|+
T Consensus 32 ~~l~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i-~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~ 107 (477)
T 2id5_A 32 TETRLLDL-GKNRIKTLNQDEFASFPHLEELELNEN-IV-SAVEPGAFNNLF-NLRTLGLRSNRLKLIPLGVFTGLSNLT 107 (477)
T ss_dssp TTCSEEEC-CSSCCCEECTTTTTTCTTCCEEECTTS-CC-CEECTTTTTTCT-TCCEEECCSSCCCSCCTTSSTTCTTCC
T ss_pred CCCcEEEC-CCCccceECHhHccCCCCCCEEECCCC-cc-CEeChhhhhCCc-cCCEEECCCCcCCccCcccccCCCCCC
Confidence 58999999 778898998777999999999999999 99 655 88899999 99999999999999997 579999999
Q ss_pred EEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHh
Q 007656 298 CLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILL 377 (594)
Q Consensus 298 ~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 377 (594)
+|++++| .+..++...+.++++|++|++++|.+... .+..+.++++|+.|+++.+....+....
T Consensus 108 ~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 108 KLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVYI---------------SHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp EEECTTS-CCCEECTTTTTTCTTCCEEEECCTTCCEE---------------CTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred EEECCCC-ccccCChhHccccccCCEEECCCCcccee---------------ChhhccCCCCCCEEECCCCcCcccChhH
Confidence 9999999 67777665699999999999999988652 3344788999999999988765543211
Q ss_pred cCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCC
Q 007656 378 SSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKL 457 (594)
Q Consensus 378 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l 457 (594)
...+++|+.|++..+.... + ....+..+++|+.|++++|.....+++..+ ...+|+.|++++| .+
T Consensus 172 --l~~l~~L~~L~l~~n~i~~-~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----------~~~~L~~L~l~~n-~l 236 (477)
T 2id5_A 172 --LSHLHGLIVLRLRHLNINA-I-RDYSFKRLYRLKVLEISHWPYLDTMTPNCL----------YGLNLTSLSITHC-NL 236 (477)
T ss_dssp --HTTCTTCCEEEEESCCCCE-E-CTTCSCSCTTCCEEEEECCTTCCEECTTTT----------TTCCCSEEEEESS-CC
T ss_pred --hcccCCCcEEeCCCCcCcE-e-ChhhcccCcccceeeCCCCccccccCcccc----------cCccccEEECcCC-cc
Confidence 1234589999996666665 4 334788899999999999988887655443 3559999999996 67
Q ss_pred cccc--ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCC-CCccCCCccEEee
Q 007656 458 KDVT--FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYW-KPLPFTHLKEISV 534 (594)
Q Consensus 458 ~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~-~~~~l~~L~~L~i 534 (594)
+.+| .+..+++|++|+|++| .++.++. ..+..+++|+.|+|+++ .+..+.. ....+++|+.|++
T Consensus 237 ~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-----------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 303 (477)
T 2id5_A 237 TAVPYLAVRHLVYLRFLNLSYN-PISTIEG-----------SMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNV 303 (477)
T ss_dssp CSCCHHHHTTCTTCCEEECCSS-CCCEECT-----------TSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEEC
T ss_pred cccCHHHhcCccccCeeECCCC-cCCccCh-----------hhccccccCCEEECCCC-ccceECHHHhcCcccCCEEEC
Confidence 7777 4889999999999999 4555533 35778999999999998 5666643 4457899999999
Q ss_pred cccCCCCCCCCCCc--CCcCcceEEEc
Q 007656 535 GYCRNLKKLPLDSN--SAKERKFVIRG 559 (594)
Q Consensus 535 ~~C~~L~~lp~~~~--~~~L~~l~I~~ 559 (594)
++| +++.+|.... .++|+.+++.+
T Consensus 304 ~~N-~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 304 SGN-QLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp CSS-CCSCCCGGGBSCGGGCCEEECCS
T ss_pred CCC-cCceeCHhHcCCCcccCEEEccC
Confidence 997 6888886542 37899998873
No 3
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=8.6e-25 Score=221.62 Aligned_cols=280 Identities=17% Similarity=0.179 Sum_probs=209.7
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLK 297 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~ 297 (594)
.+++|++|++ .++.+..++. +..+++|++|++++| .+ ..+| .+..+. +|++|++++|.++.+|. +..+++|+
T Consensus 64 ~~~~L~~L~l-~~n~i~~~~~--~~~l~~L~~L~L~~n-~i-~~~~-~~~~l~-~L~~L~l~~n~i~~~~~-~~~l~~L~ 135 (347)
T 4fmz_A 64 YLTNLEYLNL-NGNQITDISP--LSNLVKLTNLYIGTN-KI-TDIS-ALQNLT-NLRELYLNEDNISDISP-LANLTKMY 135 (347)
T ss_dssp GCTTCCEEEC-CSSCCCCCGG--GTTCTTCCEEECCSS-CC-CCCG-GGTTCT-TCSEEECTTSCCCCCGG-GTTCTTCC
T ss_pred hcCCccEEEc-cCCccccchh--hhcCCcCCEEEccCC-cc-cCch-HHcCCC-cCCEEECcCCcccCchh-hccCCcee
Confidence 7888888988 6667777776 788888999999888 88 6665 578888 89999998888888876 88888899
Q ss_pred EEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHh
Q 007656 298 CLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILL 377 (594)
Q Consensus 298 ~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 377 (594)
+|++++|..+..++. +..+++|++|++.+|.+.. . ..+..+++|+.|+++.+....+..+
T Consensus 136 ~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~----------------~-~~~~~l~~L~~L~l~~n~l~~~~~~- 195 (347)
T 4fmz_A 136 SLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD----------------V-TPIANLTDLYSLSLNYNQIEDISPL- 195 (347)
T ss_dssp EEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCC----------------C-GGGGGCTTCSEEECTTSCCCCCGGG-
T ss_pred EEECCCCCCcccccc--hhhCCCCcEEEecCCCcCC----------------c-hhhccCCCCCEEEccCCcccccccc-
Confidence 999988866666655 8888889999988887654 1 1177888899998887776554442
Q ss_pred cCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCC
Q 007656 378 SSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKL 457 (594)
Q Consensus 378 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l 457 (594)
..+++|+.|++..+.... .+ .+..+++|++|++++|.... +++ + ..+++|+.|++++| .+
T Consensus 196 ---~~l~~L~~L~l~~n~l~~-~~---~~~~~~~L~~L~l~~n~l~~-~~~--~---------~~l~~L~~L~l~~n-~l 255 (347)
T 4fmz_A 196 ---ASLTSLHYFTAYVNQITD-IT---PVANMTRLNSLKIGNNKITD-LSP--L---------ANLSQLTWLEIGTN-QI 255 (347)
T ss_dssp ---GGCTTCCEEECCSSCCCC-CG---GGGGCTTCCEEECCSSCCCC-CGG--G---------TTCTTCCEEECCSS-CC
T ss_pred ---cCCCccceeecccCCCCC-Cc---hhhcCCcCCEEEccCCccCC-Ccc--h---------hcCCCCCEEECCCC-cc
Confidence 334588888885555555 31 27778899999999876544 222 2 36889999999985 67
Q ss_pred ccccccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccC-CCCccCCCccEEeecc
Q 007656 458 KDVTFLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIY-WKPLPFTHLKEISVGY 536 (594)
Q Consensus 458 ~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~-~~~~~l~~L~~L~i~~ 536 (594)
..++.+..+++|++|++++| .++.++ .+..+++|+.|++++|. +.... .....+++|+.|++++
T Consensus 256 ~~~~~~~~l~~L~~L~l~~n-~l~~~~-------------~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~ 320 (347)
T 4fmz_A 256 SDINAVKDLTKLKMLNVGSN-QISDIS-------------VLNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQ 320 (347)
T ss_dssp CCCGGGTTCTTCCEEECCSS-CCCCCG-------------GGGGCTTCSEEECCSSC-CCGGGHHHHHTCTTCSEEECCS
T ss_pred CCChhHhcCCCcCEEEccCC-ccCCCh-------------hhcCCCCCCEEECcCCc-CCCcChhHhhccccCCEEEccC
Confidence 77788888999999999988 554442 46788999999999984 55443 2334689999999999
Q ss_pred cCCCCCCCCCCcCCcCcceEEEccH
Q 007656 537 CRNLKKLPLDSNSAKERKFVIRGEE 561 (594)
Q Consensus 537 C~~L~~lp~~~~~~~L~~l~I~~~~ 561 (594)
|+ ++.++.....++|+.+++++|.
T Consensus 321 n~-l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 321 NH-ITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp SS-CCCCGGGGGCTTCSEESSSCC-
T ss_pred Cc-cccccChhhhhccceeehhhhc
Confidence 86 6666554445888888887763
No 4
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=1.6e-24 Score=223.32 Aligned_cols=280 Identities=16% Similarity=0.140 Sum_probs=204.9
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccccchh-hhccCc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITELPEE-LKLLVN 295 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~lp~~-i~~L~~ 295 (594)
.+++|++|++ .++.+..++...|..+++|++|++++| .+ ..+ |..++.+. +|++|++++|.++.+|.. +.++++
T Consensus 67 ~l~~L~~L~L-~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l-~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~ 142 (390)
T 3o6n_A 67 SFRQVELLNL-NDLQIEEIDTYAFAYAHTIQKLYMGFN-AI-RYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPK 142 (390)
T ss_dssp HCCCCSEEEC-TTSCCCEECTTTTTTCTTCCEEECCSS-CC-CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccccCcEEEC-CCCcccccChhhccCCCCcCEEECCCC-CC-CcCCHHHhcCCC-CCCEEECCCCccCcCCHHHhcCCCC
Confidence 6889999999 777788888877999999999999999 88 666 55688898 999999999999999985 589999
Q ss_pred CcEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCcc-ccCCcccchHHhcCCCCCcEEEEEEcchhhHH
Q 007656 296 LKCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSV-LFGGGEVLIQELLGLKYLEVLELTLGSYHALQ 374 (594)
Q Consensus 296 L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 374 (594)
|++|++++| .+..++...+.++++|++|++++|.+........... .-.-....+..+...++|+.|+++.+....+.
T Consensus 143 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~ 221 (390)
T 3o6n_A 143 LTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR 221 (390)
T ss_dssp CCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE
T ss_pred CcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecc
Confidence 999999999 6788876668999999999999998865211100000 00000000111122234455555444433221
Q ss_pred HHhcCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecC
Q 007656 375 ILLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQC 454 (594)
Q Consensus 375 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 454 (594)
. ....+|+.|+++.+.+.. . ..+..+++|+.|++++|.... +.+..+. .+++|+.|++++|
T Consensus 222 ~-----~~~~~L~~L~l~~n~l~~-~---~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~---------~l~~L~~L~L~~n 282 (390)
T 3o6n_A 222 G-----PVNVELTILKLQHNNLTD-T---AWLLNYPGLVEVDLSYNELEK-IMYHPFV---------KMQRLERLYISNN 282 (390)
T ss_dssp C-----CCCSSCCEEECCSSCCCC-C---GGGGGCTTCSEEECCSSCCCE-EESGGGT---------TCSSCCEEECCSS
T ss_pred c-----cccccccEEECCCCCCcc-c---HHHcCCCCccEEECCCCcCCC-cChhHcc---------ccccCCEEECCCC
Confidence 1 112478888885555554 2 367888999999999976554 4455544 6899999999995
Q ss_pred CCCcccc-ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCCCCccCCCccEEe
Q 007656 455 HKLKDVT-FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKPLPFTHLKEIS 533 (594)
Q Consensus 455 ~~l~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~l~~L~~L~ 533 (594)
.++.++ ....+++|++|+|++| .+..++. .+..+++|+.|+++++ .+..++ ...+++|+.|+
T Consensus 283 -~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~------------~~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~ 345 (390)
T 3o6n_A 283 -RLVALNLYGQPIPTLKVLDLSHN-HLLHVER------------NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLT 345 (390)
T ss_dssp -CCCEEECSSSCCTTCCEEECCSS-CCCCCGG------------GHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEE
T ss_pred -cCcccCcccCCCCCCCEEECCCC-cceecCc------------cccccCcCCEEECCCC-ccceeC--chhhccCCEEE
Confidence 677776 4678999999999999 5666554 5678999999999998 577775 45689999999
Q ss_pred ecccC
Q 007656 534 VGYCR 538 (594)
Q Consensus 534 i~~C~ 538 (594)
+++++
T Consensus 346 l~~N~ 350 (390)
T 3o6n_A 346 LSHND 350 (390)
T ss_dssp CCSSC
T ss_pred cCCCC
Confidence 99875
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=7.4e-25 Score=238.29 Aligned_cols=288 Identities=14% Similarity=0.182 Sum_probs=178.6
Q ss_pred CCCcccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccccch-hhhccCcC
Q 007656 219 CPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITELPE-ELKLLVNL 296 (594)
Q Consensus 219 ~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L 296 (594)
+++++.|++ .++.++.+|..+|.++++|++|++++| .+ ..+ |..++.+. +|++|++++|.++.+|. .++++++|
T Consensus 50 l~~l~~l~l-~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l-~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 50 LNNQKIVTF-KNSTMRKLPAALLDSFRQVELLNLNDL-QI-EEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GCCCSEEEE-SSCEESEECTHHHHHCCCCSEEECTTS-CC-CEECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCceEEEe-eCCCCCCcCHHHHccCCCCcEEECCCC-CC-CCCChHHhcCCC-CCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 455666666 555566666666666666666666666 66 444 33566666 66666666666666654 35666666
Q ss_pred cEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHH-
Q 007656 297 KCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQI- 375 (594)
Q Consensus 297 ~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~- 375 (594)
++|++++| .+..+|.+.++++++|++|++++|.+... .+..+.++++|+.|+++.|....+..
T Consensus 126 ~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~---------------~~~~~~~l~~L~~L~L~~N~l~~~~~~ 189 (597)
T 3oja_B 126 TVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERI---------------EDDTFQATTSLQNLQLSSNRLTHVDLS 189 (597)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBC---------------CTTTTTTCTTCCEEECTTSCCSBCCGG
T ss_pred CEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCC---------------ChhhhhcCCcCcEEECcCCCCCCcChh
Confidence 66666666 56666665456666666666666655431 22235555566666655554332210
Q ss_pred -Hh------------cCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCcc
Q 007656 376 -LL------------SSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFV 442 (594)
Q Consensus 376 -~~------------~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~ 442 (594)
+. .......+|+.|+++.+.+.. ++. ...++|+.|++++|.... +.++ ..
T Consensus 190 ~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~-~~~----~~~~~L~~L~L~~n~l~~---~~~l---------~~ 252 (597)
T 3oja_B 190 LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV-VRG----PVNVELTILKLQHNNLTD---TAWL---------LN 252 (597)
T ss_dssp GCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCE-EEC----SCCSCCCEEECCSSCCCC---CGGG---------GG
T ss_pred hhhhhhhhhcccCccccccCCchhheeeccCCcccc-ccc----ccCCCCCEEECCCCCCCC---Chhh---------cc
Confidence 00 000111245555553333333 211 112567777777765443 2333 36
Q ss_pred CCCcceEeEecCCCCccc-c-ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccC
Q 007656 443 FRSLHCVRIEQCHKLKDV-T-FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIY 520 (594)
Q Consensus 443 ~~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~ 520 (594)
+++|+.|+|++|. +..+ | .++.+++|++|+|++| .+..++. ....+|+|+.|+|++| .+..++
T Consensus 253 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~------------~~~~l~~L~~L~Ls~N-~l~~i~ 317 (597)
T 3oja_B 253 YPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNN-RLVALNL------------YGQPIPTLKVLDLSHN-HLLHVE 317 (597)
T ss_dssp CTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTS-CCCEEEC------------SSSCCTTCCEEECCSS-CCCCCG
T ss_pred CCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCC-CCCCCCc------------ccccCCCCcEEECCCC-CCCccC
Confidence 8889999999864 4444 4 5888899999999888 5555543 5567899999999998 677887
Q ss_pred CCCccCCCccEEeecccCCCCCCCCCCcCCcCcceEEEcc
Q 007656 521 WKPLPFTHLKEISVGYCRNLKKLPLDSNSAKERKFVIRGE 560 (594)
Q Consensus 521 ~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~L~~l~I~~~ 560 (594)
.....+++|+.|++++|+ +..+|.. ..++|+.++++++
T Consensus 318 ~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~L~~L~l~~N 355 (597)
T 3oja_B 318 RNQPQFDRLENLYLDHNS-IVTLKLS-THHTLKNLTLSHN 355 (597)
T ss_dssp GGHHHHTTCSEEECCSSC-CCCCCCC-TTCCCSEEECCSS
T ss_pred cccccCCCCCEEECCCCC-CCCcChh-hcCCCCEEEeeCC
Confidence 776779999999999975 7777743 3478999999864
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=1e-24 Score=242.89 Aligned_cols=301 Identities=12% Similarity=0.159 Sum_probs=209.1
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcC-ccc-ccCchHHhhh------hcCcEEEccCCcccccch-
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWN-FTL-KLPLAMSELG------SSLELLDISYASITELPE- 288 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~-l~~-~lp~~i~~l~------~~L~~L~ls~~~l~~lp~- 288 (594)
++++|+.|+|++|.....+|.. |+++++|++|++++| . +++ .+|..++.+. ++|++|++++|.++.+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N-~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~ 566 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACN-RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTC-TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred cCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCC-CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh
Confidence 6899999999666667778865 899999999999999 7 744 6888887764 489999999999999998
Q ss_pred -hhhccCcCcEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCC-CcEEEEE
Q 007656 289 -ELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKY-LEVLELT 366 (594)
Q Consensus 289 -~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~-L~~L~l~ 366 (594)
.++++++|++|++++| .+..+| . ++++++|++|++++|.+.. .+..+.++++ |+.|+++
T Consensus 567 ~~l~~L~~L~~L~Ls~N-~l~~lp-~-~~~L~~L~~L~Ls~N~l~~----------------lp~~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHN-KVRHLE-A-FGTNVKLTDLKLDYNQIEE----------------IPEDFCAFTDQVEGLGFS 627 (876)
T ss_dssp HHHTTCTTCCEEECTTS-CCCBCC-C-CCTTSEESEEECCSSCCSC----------------CCTTSCEECTTCCEEECC
T ss_pred hhhhcCCCCCEEECCCC-Ccccch-h-hcCCCcceEEECcCCcccc----------------chHHHhhccccCCEEECc
Confidence 8999999999999999 678999 3 9999999999999998764 3334666666 7777777
Q ss_pred EcchhhHHHHhcCchhhhcceeEEEE-----------------------------eCCCcccccccccccCccCCceEEe
Q 007656 367 LGSYHALQILLSSNKLKSCIRSLYLH-----------------------------LTGDTASIIDATVFADLNQLNQLWI 417 (594)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~L~~L~L~-----------------------------~~~~~~~~~~~~~l~~~~~L~~L~l 417 (594)
.|.+..++....... ..+|+.|+++ .+.+.. + +...+..+++|+.|++
T Consensus 628 ~N~L~~lp~~~~~~~-~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~-l-p~~~~~~l~~L~~L~L 704 (876)
T 4ecn_A 628 HNKLKYIPNIFNAKS-VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-F-PTELFATGSPISTIIL 704 (876)
T ss_dssp SSCCCSCCSCCCTTC-SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS-C-CHHHHHTTCCCSEEEC
T ss_pred CCCCCcCchhhhccc-cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCc-c-CHHHHccCCCCCEEEC
Confidence 665543322111100 0124445443 333332 2 1112334566666666
Q ss_pred cccCCceeeeecccccccccCCCccCCCcceEeEecCCCCcccc-ccc--cCCCCceEeEccCccchhhhccCccCCCCc
Q 007656 418 DEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDVT-FLI--FAPNLKSLDLSYCSSMEEVISVGKFAETPE 494 (594)
Q Consensus 418 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~--~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 494 (594)
++|... .++...+.. ..+....+++|+.|+|++| .+..+| .+. .+++|+.|+|++| .+..++.
T Consensus 705 s~N~L~-~ip~~~~~~--~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~--------- 770 (876)
T 4ecn_A 705 SNNLMT-SIPENSLKP--KDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPT--------- 770 (876)
T ss_dssp CSCCCS-CCCTTSSSC--TTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCC---------
T ss_pred CCCcCC-ccChHHhcc--ccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccch---------
Confidence 665433 232222110 0000112348888888885 556666 454 7888888888888 4444443
Q ss_pred ccCCCccccccceecccc------cccccccCCCCccCCCccEEeecccCCCCCCCCCCcCCcCcceEEEccH
Q 007656 495 MMGHISPFENLQSLHLSQ------LPALKSIYWKPLPFTHLKEISVGYCRNLKKLPLDSNSAKERKFVIRGEE 561 (594)
Q Consensus 495 ~~~~~~~l~~L~~L~L~~------~~~L~~l~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~L~~l~I~~~~ 561 (594)
.+..+++|+.|+|++ +.-...+|.....+++|+.|++++|. +..+|.... ++|+.+++++|+
T Consensus 771 ---~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~-~~L~~LdLs~N~ 838 (876)
T 4ecn_A 771 ---QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKLT-PQLYILDIADNP 838 (876)
T ss_dssp ---GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC-SSSCEEECCSCT
T ss_pred ---hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHhhc-CCCCEEECCCCC
Confidence 677899999999977 43345666667789999999999975 588998744 789999999874
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=4.5e-25 Score=241.40 Aligned_cols=301 Identities=13% Similarity=0.168 Sum_probs=206.0
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcC-ccc-ccCchHHhh------hhcCcEEEccCCcccccch-
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWN-FTL-KLPLAMSEL------GSSLELLDISYASITELPE- 288 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~-l~~-~lp~~i~~l------~~~L~~L~ls~~~l~~lp~- 288 (594)
++++|++|++++|.....+|.. |+++++|++|++++| . +++ .+|..++.+ . +|++|++++|.++.+|.
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n-~~l~~~~lp~~~~~L~~~~~l~-~L~~L~L~~n~l~~ip~~ 323 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACN-RGISGEQLKDDWQALADAPVGE-KIQIIYIGYNNLKTFPVE 323 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTC-TTSCHHHHHHHHHHHHHSGGGG-TCCEEECCSSCCSSCCCH
T ss_pred ccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCC-CCCccccchHHHHhhhccccCC-CCCEEECCCCcCCccCch
Confidence 5899999999666666777766 899999999999999 7 844 689999987 7 99999999999999998
Q ss_pred -hhhccCcCcEEecCCCCCCC-CcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCC-CcEEEE
Q 007656 289 -ELKLLVNLKCLNLRWTDTLN-KIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKY-LEVLEL 365 (594)
Q Consensus 289 -~i~~L~~L~~L~L~~~~~l~-~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~-L~~L~l 365 (594)
.++++++|++|++++| .+. .+| . ++.+++|++|++++|.+.. .+..+.++++ |+.|++
T Consensus 324 ~~l~~l~~L~~L~L~~N-~l~g~ip-~-~~~l~~L~~L~L~~N~l~~----------------lp~~l~~l~~~L~~L~L 384 (636)
T 4eco_A 324 TSLQKMKKLGMLECLYN-QLEGKLP-A-FGSEIKLASLNLAYNQITE----------------IPANFCGFTEQVENLSF 384 (636)
T ss_dssp HHHTTCTTCCEEECCSC-CCEEECC-C-CEEEEEESEEECCSSEEEE----------------CCTTSEEECTTCCEEEC
T ss_pred hhhccCCCCCEEeCcCC-cCccchh-h-hCCCCCCCEEECCCCcccc----------------ccHhhhhhcccCcEEEc
Confidence 8999999999999999 566 888 3 8899999999999887763 3333566666 666666
Q ss_pred EEcchhhHHHHhcCc-----------------------h-------hhhcceeEEEEeCCCcccccccccccCccCCceE
Q 007656 366 TLGSYHALQILLSSN-----------------------K-------LKSCIRSLYLHLTGDTASIIDATVFADLNQLNQL 415 (594)
Q Consensus 366 ~~~~~~~~~~~~~~~-----------------------~-------~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L 415 (594)
+.|....++...... . ...+|+.|+++.+.+.. + ....+..+++|+.|
T Consensus 385 s~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-l-p~~~~~~l~~L~~L 462 (636)
T 4eco_A 385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-F-PKELFSTGSPLSSI 462 (636)
T ss_dssp CSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-C-CTHHHHTTCCCSEE
T ss_pred cCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc-C-CHHHHccCCCCCEE
Confidence 665544332211100 0 11244444443333332 2 11123345566666
Q ss_pred EecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCcccc-ccc--cCCCCceEeEccCccchhhhccCccCCC
Q 007656 416 WIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDVT-FLI--FAPNLKSLDLSYCSSMEEVISVGKFAET 492 (594)
Q Consensus 416 ~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~--~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 492 (594)
++++|... .++...+.. ..+....+++|+.|++++| .++.+| .+. .+++|++|+|++| .++.++.
T Consensus 463 ~Ls~N~l~-~i~~~~~~~--~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~------- 530 (636)
T 4eco_A 463 NLMGNMLT-EIPKNSLKD--ENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPT------- 530 (636)
T ss_dssp ECCSSCCS-BCCSSSSEE--TTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCC-------
T ss_pred ECCCCCCC-CcCHHHhcc--ccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCC-CCCCcCh-------
Confidence 66665443 333322210 0000012237888888885 455666 354 7888888888888 4444443
Q ss_pred CcccCCCccccccceecccc------cccccccCCCCccCCCccEEeecccCCCCCCCCCCcCCcCcceEEEccH
Q 007656 493 PEMMGHISPFENLQSLHLSQ------LPALKSIYWKPLPFTHLKEISVGYCRNLKKLPLDSNSAKERKFVIRGEE 561 (594)
Q Consensus 493 ~~~~~~~~~l~~L~~L~L~~------~~~L~~l~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~L~~l~I~~~~ 561 (594)
.+..+++|+.|+|++ +.-...++.....+++|+.|++++|. ++.+|.... ++|+.+++++++
T Consensus 531 -----~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~-~~L~~L~Ls~N~ 598 (636)
T 4eco_A 531 -----QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKIT-PNISVLDIKDNP 598 (636)
T ss_dssp -----GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC-TTCCEEECCSCT
T ss_pred -----hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHhHh-CcCCEEECcCCC
Confidence 677889999999954 43455677677789999999999875 588987744 889999999873
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.7e-24 Score=235.45 Aligned_cols=280 Identities=16% Similarity=0.140 Sum_probs=207.7
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccccchh-hhccCc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITELPEE-LKLLVN 295 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~lp~~-i~~L~~ 295 (594)
.+++|++|++ .++.+..+++..|+.+++|++|+|++| .+ ..+ |..++.+. +|++|++++|.++.+|.. ++++++
T Consensus 73 ~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l-~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~ 148 (597)
T 3oja_B 73 SFRQVELLNL-NDLQIEEIDTYAFAYAHTIQKLYMGFN-AI-RYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPK 148 (597)
T ss_dssp HCCCCSEEEC-TTSCCCEECTTTTTTCTTCCEEECCSS-CC-CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCCcEEEC-CCCCCCCCChHHhcCCCCCCEEECCCC-cC-CCCCHHHHcCCC-CCCEEEeeCCCCCCCCHHHhccCCC
Confidence 6889999999 777788888777999999999999999 88 666 45578898 999999999999999875 589999
Q ss_pred CcEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCcc-ccCCcccchHHhcCCCCCcEEEEEEcchhhHH
Q 007656 296 LKCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSV-LFGGGEVLIQELLGLKYLEVLELTLGSYHALQ 374 (594)
Q Consensus 296 L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 374 (594)
|++|++++| .+..++...++++++|++|++++|.+....+...... .-.-....+..+...++|+.|+++.+....+.
T Consensus 149 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~ 227 (597)
T 3oja_B 149 LTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR 227 (597)
T ss_dssp CCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEE
T ss_pred CCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccc
Confidence 999999999 6777776668999999999999998775321110000 00000001112233445566666555443322
Q ss_pred HHhcCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecC
Q 007656 375 ILLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQC 454 (594)
Q Consensus 375 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 454 (594)
. ....+|+.|+|+.+.+.. . ..+..+++|+.|++++|.... +.+..+. .+++|+.|+|++|
T Consensus 228 ~-----~~~~~L~~L~L~~n~l~~-~---~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~---------~l~~L~~L~Ls~N 288 (597)
T 3oja_B 228 G-----PVNVELTILKLQHNNLTD-T---AWLLNYPGLVEVDLSYNELEK-IMYHPFV---------KMQRLERLYISNN 288 (597)
T ss_dssp C-----SCCSCCCEEECCSSCCCC-C---GGGGGCTTCSEEECCSSCCCE-EESGGGT---------TCSSCCEEECTTS
T ss_pred c-----ccCCCCCEEECCCCCCCC-C---hhhccCCCCCEEECCCCccCC-CCHHHhc---------CccCCCEEECCCC
Confidence 1 112489999996666665 2 467889999999999976554 4455554 6899999999995
Q ss_pred CCCcccc-ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCCCCccCCCccEEe
Q 007656 455 HKLKDVT-FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKPLPFTHLKEIS 533 (594)
Q Consensus 455 ~~l~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~l~~L~~L~ 533 (594)
.+..+| .+..+++|+.|+|++| .+..++. .+..+++|+.|+|++| .+..++ ...+++|+.|+
T Consensus 289 -~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~------------~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~ 351 (597)
T 3oja_B 289 -RLVALNLYGQPIPTLKVLDLSHN-HLLHVER------------NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLT 351 (597)
T ss_dssp -CCCEEECSSSCCTTCCEEECCSS-CCCCCGG------------GHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEE
T ss_pred -CCCCCCcccccCCCCcEEECCCC-CCCccCc------------ccccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEE
Confidence 677776 4677999999999999 5556554 5678999999999998 577765 45689999999
Q ss_pred ecccC
Q 007656 534 VGYCR 538 (594)
Q Consensus 534 i~~C~ 538 (594)
++++|
T Consensus 352 l~~N~ 356 (597)
T 3oja_B 352 LSHND 356 (597)
T ss_dssp CCSSC
T ss_pred eeCCC
Confidence 99976
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=4.7e-24 Score=216.22 Aligned_cols=279 Identities=15% Similarity=0.194 Sum_probs=226.5
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLK 297 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~ 297 (594)
.+++|+.|++ .++.+..++. +..+++|++|++++| .+ ..+|. +..+. +|++|++++|.++.+| .+.++++|+
T Consensus 42 ~l~~L~~L~l-~~~~i~~~~~--~~~~~~L~~L~l~~n-~i-~~~~~-~~~l~-~L~~L~L~~n~i~~~~-~~~~l~~L~ 113 (347)
T 4fmz_A 42 ELESITKLVV-AGEKVASIQG--IEYLTNLEYLNLNGN-QI-TDISP-LSNLV-KLTNLYIGTNKITDIS-ALQNLTNLR 113 (347)
T ss_dssp HHTTCSEEEC-CSSCCCCCTT--GGGCTTCCEEECCSS-CC-CCCGG-GTTCT-TCCEEECCSSCCCCCG-GGTTCTTCS
T ss_pred hcccccEEEE-eCCccccchh--hhhcCCccEEEccCC-cc-ccchh-hhcCC-cCCEEEccCCcccCch-HHcCCCcCC
Confidence 6889999999 7777888875 889999999999999 99 88877 88999 9999999999999987 699999999
Q ss_pred EEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHh
Q 007656 298 CLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILL 377 (594)
Q Consensus 298 ~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 377 (594)
+|++++| .+..+|. +..+++|++|++++|.... .+..+..+++|+.|+++.+.......+
T Consensus 114 ~L~l~~n-~i~~~~~--~~~l~~L~~L~l~~n~~~~----------------~~~~~~~l~~L~~L~l~~~~~~~~~~~- 173 (347)
T 4fmz_A 114 ELYLNED-NISDISP--LANLTKMYSLNLGANHNLS----------------DLSPLSNMTGLNYLTVTESKVKDVTPI- 173 (347)
T ss_dssp EEECTTS-CCCCCGG--GTTCTTCCEEECTTCTTCC----------------CCGGGTTCTTCCEEECCSSCCCCCGGG-
T ss_pred EEECcCC-cccCchh--hccCCceeEEECCCCCCcc----------------cccchhhCCCCcEEEecCCCcCCchhh-
Confidence 9999999 7888887 8999999999999997654 333488999999999998876554442
Q ss_pred cCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCC
Q 007656 378 SSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKL 457 (594)
Q Consensus 378 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l 457 (594)
..+++|+.|+++.+.... ++ .+..+++|+.|++++|.... +.+ + ..+++|+.|++++| .+
T Consensus 174 ---~~l~~L~~L~l~~n~l~~-~~---~~~~l~~L~~L~l~~n~l~~-~~~--~---------~~~~~L~~L~l~~n-~l 233 (347)
T 4fmz_A 174 ---ANLTDLYSLSLNYNQIED-IS---PLASLTSLHYFTAYVNQITD-ITP--V---------ANMTRLNSLKIGNN-KI 233 (347)
T ss_dssp ---GGCTTCSEEECTTSCCCC-CG---GGGGCTTCCEEECCSSCCCC-CGG--G---------GGCTTCCEEECCSS-CC
T ss_pred ---ccCCCCCEEEccCCcccc-cc---cccCCCccceeecccCCCCC-Cch--h---------hcCCcCCEEEccCC-cc
Confidence 345589999995555555 32 37788999999999976544 222 2 36899999999996 67
Q ss_pred ccccccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCCCCccCCCccEEeeccc
Q 007656 458 KDVTFLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKPLPFTHLKEISVGYC 537 (594)
Q Consensus 458 ~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~l~~L~~L~i~~C 537 (594)
..++.+..+++|++|++++| .++.+ ..+..+++|+.|++++| .+..++. ...+++|+.|++++|
T Consensus 234 ~~~~~~~~l~~L~~L~l~~n-~l~~~-------------~~~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 234 TDLSPLANLSQLTWLEIGTN-QISDI-------------NAVKDLTKLKMLNVGSN-QISDISV-LNNLSQLNSLFLNNN 297 (347)
T ss_dssp CCCGGGTTCTTCCEEECCSS-CCCCC-------------GGGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEEECCSS
T ss_pred CCCcchhcCCCCCEEECCCC-ccCCC-------------hhHhcCCCcCEEEccCC-ccCCChh-hcCCCCCCEEECcCC
Confidence 77777999999999999999 55444 25678999999999998 6777743 457899999999998
Q ss_pred CCCCCCCCC-C-cCCcCcceEEEccH
Q 007656 538 RNLKKLPLD-S-NSAKERKFVIRGEE 561 (594)
Q Consensus 538 ~~L~~lp~~-~-~~~~L~~l~I~~~~ 561 (594)
+ +...+.. . ..++|+.+++++|.
T Consensus 298 ~-l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 298 Q-LGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp C-CCGGGHHHHHTCTTCSEEECCSSS
T ss_pred c-CCCcChhHhhccccCCEEEccCCc
Confidence 5 5544322 2 23899999999883
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=8.1e-24 Score=228.34 Aligned_cols=112 Identities=24% Similarity=0.309 Sum_probs=90.8
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCc-hHHhhhhcCcEEEccCCccccc--chhhhccC
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPL-AMSELGSSLELLDISYASITEL--PEELKLLV 294 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~-~i~~l~~~L~~L~ls~~~l~~l--p~~i~~L~ 294 (594)
.+++|++|++ +++.+..+++..|.++++|++|++++| .+ ..+|+ .++.+. +|++|++++|.++.+ |..+++++
T Consensus 48 ~l~~L~~L~L-s~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l-~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 48 ACANLQVLIL-KSSRINTIEGDAFYSLGSLEHLDLSDN-HL-SSLSSSWFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLT 123 (549)
T ss_dssp SCTTCCEEEC-TTSCCCEECTTTTTTCTTCCEEECTTS-CC-CSCCHHHHTTCT-TCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred cCCcccEEEC-CCCCcCccChhhccccccCCEEECCCC-cc-CccCHHHhccCC-CCcEEECCCCcccccchhhhhhccC
Confidence 7888999999 666787887766888899999999998 88 66654 488888 999999999888854 56788888
Q ss_pred cCcEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCc
Q 007656 295 NLKCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFN 333 (594)
Q Consensus 295 ~L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~ 333 (594)
+|++|++++|..+..+|...++++++|++|++++|.+..
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 999999988855777875558888899999998888765
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=4.2e-24 Score=238.05 Aligned_cols=308 Identities=13% Similarity=0.144 Sum_probs=201.5
Q ss_pred CCCCcccccccccccccc------------------cCchh-hcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEc
Q 007656 218 TCPHLHTLFLASNNSLQR------------------ITDGF-FQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDI 278 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~------------------l~~~~-~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~l 278 (594)
++++|+.|+| +++.+.. +|..+ |.++++|++|+|++| .+.+.+|..++.+. +|++|++
T Consensus 446 ~L~~L~~L~L-s~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N-~l~~~iP~~l~~L~-~L~~L~L 522 (876)
T 4ecn_A 446 RLTKLQIIYF-ANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC-PNMTQLPDFLYDLP-ELQSLNI 522 (876)
T ss_dssp GCTTCCEEEE-ESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC-TTCCSCCGGGGGCS-SCCEEEC
T ss_pred cCCCCCEEEC-cCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC-CCCccChHHHhCCC-CCCEEEC
Confidence 7899999999 6666776 88873 339999999999999 76588999999999 9999999
Q ss_pred cCCc-ccc--cchhhhccC-------cCcEEecCCCCCCCCcch-hhhcCCCCCcEEEecCCCCCccccCCCCccccCCc
Q 007656 279 SYAS-ITE--LPEELKLLV-------NLKCLNLRWTDTLNKIPR-QLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGG 347 (594)
Q Consensus 279 s~~~-l~~--lp~~i~~L~-------~L~~L~L~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 347 (594)
++|. ++. +|..+++++ +|++|++++| .+..+|. +.++++++|++|++++|.+..
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~-------------- 587 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVRH-------------- 587 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCCB--------------
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCccc--------------
Confidence 9997 885 998888877 9999999999 7889998 239999999999999998864
Q ss_pred ccchHHhcCCCCCcEEEEEEcchhhHHHHhcCchhhhc-ceeEEEEeCCCcccccccccccCc--cCCceEEecccCCce
Q 007656 348 EVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSC-IRSLYLHLTGDTASIIDATVFADL--NQLNQLWIDEGIELE 424 (594)
Q Consensus 348 ~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~L~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~ 424 (594)
.+ .+.++++|+.|+++.|....++.. ...+++ |+.|+|+.+.+.. ++. .+..+ ++|+.|++++|....
T Consensus 588 --lp-~~~~L~~L~~L~Ls~N~l~~lp~~---l~~l~~~L~~L~Ls~N~L~~-lp~--~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 588 --LE-AFGTNVKLTDLKLDYNQIEEIPED---FCAFTDQVEGLGFSHNKLKY-IPN--IFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp --CC-CCCTTSEESEEECCSSCCSCCCTT---SCEECTTCCEEECCSSCCCS-CCS--CCCTTCSSCEEEEECCSSCTTT
T ss_pred --ch-hhcCCCcceEEECcCCccccchHH---HhhccccCCEEECcCCCCCc-Cch--hhhccccCCCCEEECcCCcCCC
Confidence 22 588999999999998887644322 233446 9999996666665 543 33333 458888888876544
Q ss_pred eeeecccccccccCCCccCCCcceEeEecCCCCccccc--cccCCCCceEeEccCccchhhhccCccCCC----------
Q 007656 425 ELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDVTF--LIFAPNLKSLDLSYCSSMEEVISVGKFAET---------- 492 (594)
Q Consensus 425 ~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~---------- 492 (594)
.+ +.+... .....+++|+.|++++| .+..+|. +..+++|+.|+|++| .+..++........
T Consensus 659 ~i-p~l~~~----l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~ 731 (876)
T 4ecn_A 659 EG-RNISCS----MDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLT 731 (876)
T ss_dssp TS-SSCSSC----TTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCC
T ss_pred cc-ccchhh----hccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCcc
Confidence 21 111100 00012335556666553 3334441 335555555555555 33333321111000
Q ss_pred ---------CcccCCCc--cccccceecccccccccccCCCCccCCCccEEeecc------cCCCCCCCCCCcC-CcCcc
Q 007656 493 ---------PEMMGHIS--PFENLQSLHLSQLPALKSIYWKPLPFTHLKEISVGY------CRNLKKLPLDSNS-AKERK 554 (594)
Q Consensus 493 ---------~~~~~~~~--~l~~L~~L~L~~~~~L~~l~~~~~~l~~L~~L~i~~------C~~L~~lp~~~~~-~~L~~ 554 (594)
..++..+. .+++|+.|+|++| .+..++.....+++|+.|++++ |.-...+|..... ++|+.
T Consensus 732 ~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~ 810 (876)
T 4ecn_A 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810 (876)
T ss_dssp EEECCSSCCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCE
T ss_pred EEECCCCCCccchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCE
Confidence 00111333 5666666666665 4555655555666666666655 2223345544333 66666
Q ss_pred eEEEcc
Q 007656 555 FVIRGE 560 (594)
Q Consensus 555 l~I~~~ 560 (594)
|++++|
T Consensus 811 L~Ls~N 816 (876)
T 4ecn_A 811 LQIGSN 816 (876)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 666665
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=3.5e-24 Score=234.30 Aligned_cols=311 Identities=14% Similarity=0.151 Sum_probs=204.7
Q ss_pred CCCCcccccccccccccc------------------cCchhhc--CCCcccEEEccCCcCcccccCchHHhhhhcCcEEE
Q 007656 218 TCPHLHTLFLASNNSLQR------------------ITDGFFQ--LMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLD 277 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~------------------l~~~~~~--~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ 277 (594)
++++|++|++ +++.+.. +|.. ++ ++++|++|++++| .+.+.+|..++.+. +|++|+
T Consensus 204 ~l~~L~~L~L-s~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~-~L~~L~ 279 (636)
T 4eco_A 204 RLTKLRQFYM-GNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNC-PNLTKLPTFLKALP-EMQLIN 279 (636)
T ss_dssp GCTTCCEEEE-ESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECC-TTCSSCCTTTTTCS-SCCEEE
T ss_pred cccCCCEEEC-cCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCC-cCCccChHHHhcCC-CCCEEE
Confidence 7999999999 5666777 8887 77 9999999999999 76588899999999 999999
Q ss_pred ccCCc-cc--ccchhhhcc------CcCcEEecCCCCCCCCcch--hhhcCCCCCcEEEecCCCCCccccCCCCccccCC
Q 007656 278 ISYAS-IT--ELPEELKLL------VNLKCLNLRWTDTLNKIPR--QLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGG 346 (594)
Q Consensus 278 ls~~~-l~--~lp~~i~~L------~~L~~L~L~~~~~l~~lp~--~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 346 (594)
+++|. ++ .+|..++++ ++|++|++++| .+..+|. . ++++++|++|++++|.+.+
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~-l~~l~~L~~L~L~~N~l~g------------- 344 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETS-LQKMKKLGMLECLYNQLEG------------- 344 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHH-HTTCTTCCEEECCSCCCEE-------------
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhh-hccCCCCCEEeCcCCcCcc-------------
Confidence 99998 88 499999887 99999999999 7889997 5 9999999999999998873
Q ss_pred cccchHHhcCCCCCcEEEEEEcchhhHHHHhcCchhhhc-ceeEEEEeCCCcccccccccccCccCCceEEecccCCcee
Q 007656 347 GEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSC-IRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEE 425 (594)
Q Consensus 347 ~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 425 (594)
..+ .+..+++|+.|+++.|....++.. ...+++ |+.|+++.+.+.. ++.......+++|+.|++++|.....
T Consensus 345 --~ip-~~~~l~~L~~L~L~~N~l~~lp~~---l~~l~~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~~ 417 (636)
T 4eco_A 345 --KLP-AFGSEIKLASLNLAYNQITEIPAN---FCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSV 417 (636)
T ss_dssp --ECC-CCEEEEEESEEECCSSEEEECCTT---SEEECTTCCEEECCSSCCSS-CCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred --chh-hhCCCCCCCEEECCCCccccccHh---hhhhcccCcEEEccCCcCcc-cchhhhhcccCccCEEECcCCcCCCc
Confidence 133 588899999999998876643322 233446 9999996666665 54322222344788888888765442
Q ss_pred eeecccccccccCCCccCCCcceEeEecCCCCccccc--cccCCCCceEeEccCccchhhhccCccCC------------
Q 007656 426 LKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDVTF--LIFAPNLKSLDLSYCSSMEEVISVGKFAE------------ 491 (594)
Q Consensus 426 l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~------------ 491 (594)
+ |..+.. .......+++|+.|++++| .++.+|. +..+++|++|+|++| .++.++.......
T Consensus 418 ~-p~~l~~--~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~ 492 (636)
T 4eco_A 418 D-GKNFDP--LDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTS 492 (636)
T ss_dssp T-TCSSCT--TCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCE
T ss_pred c-hhhhcc--cccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccE
Confidence 2 222110 0000012445666666663 3444442 334566666666655 3333332111000
Q ss_pred -------CCcccCCCc--cccccceecccccccccccCCCCccCCCccEEeecc------cCCCCCCCCCCcC-CcCcce
Q 007656 492 -------TPEMMGHIS--PFENLQSLHLSQLPALKSIYWKPLPFTHLKEISVGY------CRNLKKLPLDSNS-AKERKF 555 (594)
Q Consensus 492 -------~~~~~~~~~--~l~~L~~L~L~~~~~L~~l~~~~~~l~~L~~L~i~~------C~~L~~lp~~~~~-~~L~~l 555 (594)
...++..+. .+++|+.|+|++| .+..+|.....+++|+.|++++ +.-...+|..... ++|+.+
T Consensus 493 L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L 571 (636)
T 4eco_A 493 IDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571 (636)
T ss_dssp EECCSSCCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred EECcCCcCCccChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEE
Confidence 001111333 5666777777666 4555665555666777776643 3233445544433 667777
Q ss_pred EEEcc
Q 007656 556 VIRGE 560 (594)
Q Consensus 556 ~I~~~ 560 (594)
++++|
T Consensus 572 ~Ls~N 576 (636)
T 4eco_A 572 QIGSN 576 (636)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 77665
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=1.1e-23 Score=221.90 Aligned_cols=126 Identities=17% Similarity=0.179 Sum_probs=94.6
Q ss_pred cCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCccc-c-ccccCCCCceEeEccCccchhhhccC
Q 007656 410 NQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDV-T-FLIFAPNLKSLDLSYCSSMEEVISVG 487 (594)
Q Consensus 410 ~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~~~~l~~~~~~~ 487 (594)
++|+.|++++|.... +.+.++. .+++|+.|++++| .+..+ | .++.+++|++|+|++| .++.++.
T Consensus 275 ~~L~~L~l~~n~l~~-~~~~~~~---------~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-- 340 (455)
T 3v47_A 275 SGVKTCDLSKSKIFA-LLKSVFS---------HFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQN-FLGSIDS-- 340 (455)
T ss_dssp SCCCEEECCSSCCCE-ECTTTTT---------TCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECG--
T ss_pred cCceEEEecCccccc-cchhhcc---------cCCCCCEEECCCC-cccccChhHhcCcccCCEEECCCC-ccCCcCh--
Confidence 578888888765544 3344443 6889999999986 45554 3 5888999999999998 4454432
Q ss_pred ccCCCCcccCCCccccccceeccccccccccc-CCCCccCCCccEEeecccCCCCCCCCCC--cCCcCcceEEEcc
Q 007656 488 KFAETPEMMGHISPFENLQSLHLSQLPALKSI-YWKPLPFTHLKEISVGYCRNLKKLPLDS--NSAKERKFVIRGE 560 (594)
Q Consensus 488 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l-~~~~~~l~~L~~L~i~~C~~L~~lp~~~--~~~~L~~l~I~~~ 560 (594)
..+..+++|+.|+|++| .+..+ +.....+++|+.|++++| +++.+|... ..++|+.++++++
T Consensus 341 ---------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 341 ---------RMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp ---------GGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ---------hHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCC
Confidence 25778999999999998 56666 445567999999999995 688888754 2389999999854
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=4.2e-23 Score=217.73 Aligned_cols=302 Identities=20% Similarity=0.195 Sum_probs=162.2
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLK 297 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~ 297 (594)
.+++|++|++ +++.+..+++ +.++++|++|++++| .+ ..++. ++.+. +|++|++++|.++.+|. +.++++|+
T Consensus 66 ~l~~L~~L~L-s~n~l~~~~~--~~~l~~L~~L~l~~n-~l-~~~~~-~~~l~-~L~~L~L~~n~l~~~~~-~~~l~~L~ 137 (466)
T 1o6v_A 66 YLNNLTQINF-SNNQLTDITP--LKNLTKLVDILMNNN-QI-ADITP-LANLT-NLTGLTLFNNQITDIDP-LKNLTNLN 137 (466)
T ss_dssp GCTTCCEEEC-CSSCCCCCGG--GTTCTTCCEEECCSS-CC-CCCGG-GTTCT-TCCEEECCSSCCCCCGG-GTTCTTCS
T ss_pred hhcCCCEEEC-CCCccCCchh--hhccccCCEEECCCC-cc-ccChh-hcCCC-CCCEEECCCCCCCCChH-HcCCCCCC
Confidence 6888888888 6667777776 788888888888888 88 66766 88888 88888888888888875 88888888
Q ss_pred EEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccc-cCCCCc----cccCCcccchHHhcCCCCCcEEEEEEcchhh
Q 007656 298 CLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFL-EAPEDS----VLFGGGEVLIQELLGLKYLEVLELTLGSYHA 372 (594)
Q Consensus 298 ~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~-~~~~~~----~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 372 (594)
+|++++| .+..++. ++.+++|++|++.+ ...... +..-.+ .+.++.-..+..+..+++|+.|+++.+....
T Consensus 138 ~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~ 213 (466)
T 1o6v_A 138 RLELSSN-TISDISA--LSGLTSLQQLSFGN-QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD 213 (466)
T ss_dssp EEEEEEE-EECCCGG--GTTCTTCSEEEEEE-SCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC
T ss_pred EEECCCC-ccCCChh--hccCCcccEeecCC-cccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccc
Confidence 8888888 5666664 55665555555542 111100 000000 0000000011224445555555555444332
Q ss_pred HHHHhcCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeeccccc-c------------cccCC
Q 007656 373 LQILLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEI-V------------RKRRE 439 (594)
Q Consensus 373 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~-~------------~~~~~ 439 (594)
...+ ..+++|+.|+++.+.... + ..+..+++|+.|++++|.... +.+ +.. . ...+.
T Consensus 214 ~~~~----~~l~~L~~L~l~~n~l~~-~---~~l~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~ 282 (466)
T 1o6v_A 214 ITPL----GILTNLDELSLNGNQLKD-I---GTLASLTNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISNISP 282 (466)
T ss_dssp CGGG----GGCTTCCEEECCSSCCCC-C---GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCSEEECCSSCCCCCGG
T ss_pred cccc----cccCCCCEEECCCCCccc-c---hhhhcCCCCCEEECCCCcccc-chh--hhcCCCCCEEECCCCccCcccc
Confidence 2211 122345555553333332 1 134444555555555543322 111 110 0 00000
Q ss_pred CccCCCcceEeEecCCCCccccccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceeccccccccccc
Q 007656 440 PFVFRSLHCVRIEQCHKLKDVTFLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSI 519 (594)
Q Consensus 440 ~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l 519 (594)
...+++|+.|++++| .+..++.++.+++|++|++++| .+..++ .+..+++|+.|++++| .+..+
T Consensus 283 ~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n-~l~~~~-------------~~~~l~~L~~L~l~~n-~l~~~ 346 (466)
T 1o6v_A 283 LAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFN-NISDIS-------------PVSSLTKLQRLFFYNN-KVSDV 346 (466)
T ss_dssp GTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSS-CCSCCG-------------GGGGCTTCCEEECCSS-CCCCC
T ss_pred ccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCC-cCCCch-------------hhccCccCCEeECCCC-ccCCc
Confidence 123444555555543 3344444445555555555555 222221 2456677777777776 45555
Q ss_pred CCCCccCCCccEEeecccCCCCCCCCCCcCCcCcceEEEcc
Q 007656 520 YWKPLPFTHLKEISVGYCRNLKKLPLDSNSAKERKFVIRGE 560 (594)
Q Consensus 520 ~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~L~~l~I~~~ 560 (594)
+ ....+++|+.|++++|. +..++.....++|+.+.+++|
T Consensus 347 ~-~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 347 S-SLANLTNINWLSAGHNQ-ISDLTPLANLTRITQLGLNDQ 385 (466)
T ss_dssp G-GGTTCTTCCEEECCSSC-CCBCGGGTTCTTCCEEECCCE
T ss_pred h-hhccCCCCCEEeCCCCc-cCccchhhcCCCCCEEeccCC
Confidence 3 33457778888887764 444333333477788877766
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=5.4e-23 Score=224.61 Aligned_cols=143 Identities=15% Similarity=0.043 Sum_probs=73.7
Q ss_pred cccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCccc-c-ccccCCCCceEeEccCccchh
Q 007656 405 VFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDV-T-FLIFAPNLKSLDLSYCSSMEE 482 (594)
Q Consensus 405 ~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~~~~l~~ 482 (594)
.+..+++|+.|++++|... .+ |..+. .+++|+.|++++| .+..+ | .+..+++|++|++++|.....
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~l-p~~l~---------~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 340 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-EL-PSGLV---------GLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLE 340 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-CC-CSSCC---------SCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCCB
T ss_pred HhccccCCCEEeccCCccC-CC-Chhhc---------ccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCcccc
Confidence 4666777777777776544 23 33322 4556666666654 23332 2 355555566665555532222
Q ss_pred hhccCccC------------CCCc---ccCCCccccccceeccccccccccc-CCCCccCCCccEEeecccCCCCCCCCC
Q 007656 483 VISVGKFA------------ETPE---MMGHISPFENLQSLHLSQLPALKSI-YWKPLPFTHLKEISVGYCRNLKKLPLD 546 (594)
Q Consensus 483 ~~~~~~~~------------~~~~---~~~~~~~l~~L~~L~L~~~~~L~~l-~~~~~~l~~L~~L~i~~C~~L~~lp~~ 546 (594)
++...... .... .+..+..+++|+.|+++++. +..+ +.....+++|+.|++++|.--...|..
T Consensus 341 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp CCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred cchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence 21100000 0000 01245667777777777763 4443 333445777888888776433233322
Q ss_pred --CcCCcCcceEEEcc
Q 007656 547 --SNSAKERKFVIRGE 560 (594)
Q Consensus 547 --~~~~~L~~l~I~~~ 560 (594)
...++|+.+++++|
T Consensus 420 ~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHS 435 (606)
T ss_dssp TTTTCTTCCEEECTTC
T ss_pred hhhCcccCCEEECCCC
Confidence 12377888888766
No 16
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=2.4e-23 Score=208.65 Aligned_cols=88 Identities=23% Similarity=0.387 Sum_probs=47.5
Q ss_pred CCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCcEE
Q 007656 220 PHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLKCL 299 (594)
Q Consensus 220 ~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L 299 (594)
++++.|++ .++.+..+|.. +.++++|++|++++| .+ ..+|..++.+. +|++|++++|.++.+|..++++++|++|
T Consensus 81 ~~l~~L~L-~~n~l~~lp~~-l~~l~~L~~L~L~~n-~l-~~lp~~~~~l~-~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALEL-RSVPLPQFPDQ-AFRLSHLQHMTIDAA-GL-MELPDTMQQFA-GLETLTLARNPLRALPASIASLNRLREL 155 (328)
T ss_dssp TTCCEEEE-ESSCCSSCCSC-GGGGTTCSEEEEESS-CC-CCCCSCGGGGT-TCSEEEEESCCCCCCCGGGGGCTTCCEE
T ss_pred cceeEEEc-cCCCchhcChh-hhhCCCCCEEECCCC-Cc-cchhHHHhccC-CCCEEECCCCccccCcHHHhcCcCCCEE
Confidence 45555555 44445555554 344555555555555 55 45555555555 5555555555555555555555555555
Q ss_pred ecCCCCCCCCcch
Q 007656 300 NLRWTDTLNKIPR 312 (594)
Q Consensus 300 ~L~~~~~l~~lp~ 312 (594)
++++|..+..+|.
T Consensus 156 ~L~~n~~~~~~p~ 168 (328)
T 4fcg_A 156 SIRACPELTELPE 168 (328)
T ss_dssp EEEEETTCCCCCS
T ss_pred ECCCCCCccccCh
Confidence 5555444445554
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=8e-23 Score=215.16 Aligned_cols=297 Identities=20% Similarity=0.175 Sum_probs=207.8
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccc-cchh--hhcc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITE-LPEE--LKLL 293 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~-lp~~--i~~L 293 (594)
++++|++|++++|.....++...|.++++|++|++++| .+ ..+ |..++.+. +|++|++++|.++. +|.. +..+
T Consensus 52 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l-~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l 128 (455)
T 3v47_A 52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QF-LQLETGAFNGLA-NLEVLTLTQCNLDGAVLSGNFFKPL 128 (455)
T ss_dssp SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TT-CEECTTTTTTCT-TCCEEECTTSCCBTHHHHSSTTTTC
T ss_pred cCccccEEECcCCcccceECcccccccccCCEEeCCCC-cc-CccChhhccCcc-cCCEEeCCCCCCCccccCcccccCc
Confidence 78999999994444334777777899999999999999 88 554 78899998 99999999998885 4444 8889
Q ss_pred CcCcEEecCCCCCCCCc-chhhhcCCCCCcEEEecCCCCCccccCCCCcc---------ccCC-----cc-----cchHH
Q 007656 294 VNLKCLNLRWTDTLNKI-PRQLISILSWLRVLRMLGTGWFNFLEAPEDSV---------LFGG-----GE-----VLIQE 353 (594)
Q Consensus 294 ~~L~~L~L~~~~~l~~l-p~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~---------~~~~-----~~-----~~~~~ 353 (594)
++|++|++++| .+..+ |...+.++++|++|++++|.+........... .... .. .....
T Consensus 129 ~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 207 (455)
T 3v47_A 129 TSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207 (455)
T ss_dssp TTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCC
T ss_pred ccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccc
Confidence 99999999999 56666 54447889999999999988765322110000 0000 00 00011
Q ss_pred hcCCCCCcEEEEEEcchhhHH--HHhcC---c--------------------------------hhhhcceeEEEEeCCC
Q 007656 354 LLGLKYLEVLELTLGSYHALQ--ILLSS---N--------------------------------KLKSCIRSLYLHLTGD 396 (594)
Q Consensus 354 l~~L~~L~~L~l~~~~~~~~~--~~~~~---~--------------------------------~~~~~L~~L~L~~~~~ 396 (594)
+..+++|+.|+++.+...... .+... . ....+|+.|+++.+..
T Consensus 208 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 287 (455)
T 3v47_A 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI 287 (455)
T ss_dssp TTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCC
T ss_pred ccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccc
Confidence 334577888888877643211 11110 0 0013566777744444
Q ss_pred cccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCcccc--ccccCCCCceEeE
Q 007656 397 TASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDVT--FLIFAPNLKSLDL 474 (594)
Q Consensus 397 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L 474 (594)
.. . ....+..+++|+.|++++|.... +.+..+. .+++|+.|++++| .+..++ .++.+++|++|+|
T Consensus 288 ~~-~-~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~---------~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 288 FA-L-LKSVFSHFTDLEQLTLAQNEINK-IDDNAFW---------GLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp CE-E-CTTTTTTCTTCCEEECTTSCCCE-ECTTTTT---------TCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEEC
T ss_pred cc-c-chhhcccCCCCCEEECCCCcccc-cChhHhc---------CcccCCEEECCCC-ccCCcChhHhcCcccCCEEEC
Confidence 44 2 23367889999999999976554 4455543 6899999999996 556653 5889999999999
Q ss_pred ccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCCCC-ccCCCccEEeecccCCCCCCC
Q 007656 475 SYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKP-LPFTHLKEISVGYCRNLKKLP 544 (594)
Q Consensus 475 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~-~~l~~L~~L~i~~C~~L~~lp 544 (594)
++| .++.++. ..+..+++|+.|+|+++ .++.++... ..+++|+.|++++++--...|
T Consensus 355 s~N-~l~~~~~-----------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 355 SYN-HIRALGD-----------QSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CSS-CCCEECT-----------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCC-cccccCh-----------hhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999 4555432 36788999999999998 688887754 478999999999987544444
No 18
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=6.7e-23 Score=206.10 Aligned_cols=104 Identities=27% Similarity=0.347 Sum_probs=50.6
Q ss_pred CcccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccccchhhhccCcCcEE
Q 007656 221 HLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITELPEELKLLVNLKCL 299 (594)
Q Consensus 221 ~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L 299 (594)
+++.|++ .++.++.++...|.++++|++|++++| .+ ..+ |..+..+. +|++|++++|.++.+|..+. ++|++|
T Consensus 53 ~l~~L~L-~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l-~~~~~~~~~~l~-~L~~L~Ls~n~l~~l~~~~~--~~L~~L 126 (330)
T 1xku_A 53 DTALLDL-QNNKITEIKDGDFKNLKNLHTLILINN-KI-SKISPGAFAPLV-KLERLYLSKNQLKELPEKMP--KTLQEL 126 (330)
T ss_dssp TCCEEEC-CSSCCCCBCTTTTTTCTTCCEEECCSS-CC-CCBCTTTTTTCT-TCCEEECCSSCCSBCCSSCC--TTCCEE
T ss_pred CCeEEEC-CCCcCCEeChhhhccCCCCCEEECCCC-cC-CeeCHHHhcCCC-CCCEEECCCCcCCccChhhc--ccccEE
Confidence 4455555 344444444444455555555555555 44 333 44455554 55555555555555544332 445555
Q ss_pred ecCCCCCCCCcchhhhcCCCCCcEEEecCCCC
Q 007656 300 NLRWTDTLNKIPRQLISILSWLRVLRMLGTGW 331 (594)
Q Consensus 300 ~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~ 331 (594)
++++| .+..++...+.++++|++|++++|.+
T Consensus 127 ~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l 157 (330)
T 1xku_A 127 RVHEN-EITKVRKSVFNGLNQMIVVELGTNPL 157 (330)
T ss_dssp ECCSS-CCCBBCHHHHTTCTTCCEEECCSSCC
T ss_pred ECCCC-cccccCHhHhcCCccccEEECCCCcC
Confidence 55555 44444444445555555555555444
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=7.3e-23 Score=216.76 Aligned_cols=272 Identities=20% Similarity=0.150 Sum_probs=210.8
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCch-HHhhhhcCcEEEccCCcccccc-hhhhccCc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLA-MSELGSSLELLDISYASITELP-EELKLLVN 295 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~-i~~l~~~L~~L~ls~~~l~~lp-~~i~~L~~ 295 (594)
.+++|++|+| .++.+..+++..|.++++|++|+|++| .+ ..+|.. +..+. +|++|++++|.+..++ ..+.++++
T Consensus 54 ~l~~L~~L~L-~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l-~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~ 129 (477)
T 2id5_A 54 SFPHLEELEL-NENIVSAVEPGAFNNLFNLRTLGLRSN-RL-KLIPLGVFTGLS-NLTKLDISENKIVILLDYMFQDLYN 129 (477)
T ss_dssp TCTTCCEEEC-TTSCCCEECTTTTTTCTTCCEEECCSS-CC-CSCCTTSSTTCT-TCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCCCCCEEEC-CCCccCEeChhhhhCCccCCEEECCCC-cC-CccCcccccCCC-CCCEEECCCCccccCChhHcccccc
Confidence 8999999999 677888887777999999999999999 99 888654 67888 9999999999998775 47899999
Q ss_pred CcEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHH
Q 007656 296 LKCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQI 375 (594)
Q Consensus 296 L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 375 (594)
|++|++++| .+..++...+.++++|++|++++|.+.. .....+.++++|+.|+++.+....+..
T Consensus 130 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~l~~l~~L~~L~l~~n~i~~~~~ 193 (477)
T 2id5_A 130 LKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLTS---------------IPTEALSHLHGLIVLRLRHLNINAIRD 193 (477)
T ss_dssp CCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCSS---------------CCHHHHTTCTTCCEEEEESCCCCEECT
T ss_pred CCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCcc---------------cChhHhcccCCCcEEeCCCCcCcEeCh
Confidence 999999999 6777776569999999999999998765 244568899999999999877654332
Q ss_pred HhcCchhhhcceeEEE-EeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecC
Q 007656 376 LLSSNKLKSCIRSLYL-HLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQC 454 (594)
Q Consensus 376 ~~~~~~~~~~L~~L~L-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 454 (594)
.....+.+|+.|++ ++..... ++. ......+|++|++++|... .++...+. .+++|+.|+|++|
T Consensus 194 --~~~~~l~~L~~L~l~~~~~~~~-~~~--~~~~~~~L~~L~l~~n~l~-~~~~~~~~---------~l~~L~~L~Ls~n 258 (477)
T 2id5_A 194 --YSFKRLYRLKVLEISHWPYLDT-MTP--NCLYGLNLTSLSITHCNLT-AVPYLAVR---------HLVYLRFLNLSYN 258 (477)
T ss_dssp --TCSCSCTTCCEEEEECCTTCCE-ECT--TTTTTCCCSEEEEESSCCC-SCCHHHHT---------TCTTCCEEECCSS
T ss_pred --hhcccCcccceeeCCCCccccc-cCc--ccccCccccEEECcCCccc-ccCHHHhc---------CccccCeeECCCC
Confidence 12233458999999 5444443 322 3333458999999997554 34333443 6899999999985
Q ss_pred CCCcccc--ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCCCC-ccCCCccE
Q 007656 455 HKLKDVT--FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKP-LPFTHLKE 531 (594)
Q Consensus 455 ~~l~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~-~~l~~L~~ 531 (594)
.+..++ .+..+++|++|+|++| .+..+.. ..+..+++|+.|+|+++ .++.++... ..+++|+.
T Consensus 259 -~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-----------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 324 (477)
T 2id5_A 259 -PISTIEGSMLHELLRLQEIQLVGG-QLAVVEP-----------YAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLET 324 (477)
T ss_dssp -CCCEECTTSCTTCTTCCEEECCSS-CCSEECT-----------TTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCE
T ss_pred -cCCccChhhccccccCCEEECCCC-ccceECH-----------HHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCE
Confidence 466665 4888999999999998 4554432 36778899999999998 678777653 46789999
Q ss_pred EeecccC
Q 007656 532 ISVGYCR 538 (594)
Q Consensus 532 L~i~~C~ 538 (594)
|+++++|
T Consensus 325 L~l~~N~ 331 (477)
T 2id5_A 325 LILDSNP 331 (477)
T ss_dssp EECCSSC
T ss_pred EEccCCC
Confidence 9998865
No 20
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=7.7e-23 Score=204.99 Aligned_cols=230 Identities=22% Similarity=0.229 Sum_probs=142.7
Q ss_pred CCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCcEEecCCCCCCCCcchhhhcCCCCCc
Q 007656 243 LMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLR 322 (594)
Q Consensus 243 ~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~ 322 (594)
...++++|++++| .+ ..+|..++.+. +|++|++++|.++.+|..++++++|++|++++| .+..+|.. ++++++|+
T Consensus 79 ~~~~l~~L~L~~n-~l-~~lp~~l~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~-l~~l~~L~ 153 (328)
T 4fcg_A 79 TQPGRVALELRSV-PL-PQFPDQAFRLS-HLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPAS-IASLNRLR 153 (328)
T ss_dssp TSTTCCEEEEESS-CC-SSCCSCGGGGT-TCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGG-GGGCTTCC
T ss_pred cccceeEEEccCC-Cc-hhcChhhhhCC-CCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHH-HhcCcCCC
Confidence 4689999999999 99 89999999999 999999999999999999999999999999999 78899986 99999999
Q ss_pred EEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcCchhhhcceeEEEEeCCCcccccc
Q 007656 323 VLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLHLTGDTASIID 402 (594)
Q Consensus 323 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 402 (594)
+|++++|.......... . .......+.++++|+.|+++.|. +.. ++
T Consensus 154 ~L~L~~n~~~~~~p~~~----~--~~~~~~~~~~l~~L~~L~L~~n~--------------------------l~~-lp- 199 (328)
T 4fcg_A 154 ELSIRACPELTELPEPL----A--STDASGEHQGLVNLQSLRLEWTG--------------------------IRS-LP- 199 (328)
T ss_dssp EEEEEEETTCCCCCSCS----E--EEC-CCCEEESTTCCEEEEEEEC--------------------------CCC-CC-
T ss_pred EEECCCCCCccccChhH----h--hccchhhhccCCCCCEEECcCCC--------------------------cCc-ch-
Confidence 99999987654111100 0 00000112224444444433322 222 21
Q ss_pred cccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCcccc-ccccCCCCceEeEccCccch
Q 007656 403 ATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDVT-FLIFAPNLKSLDLSYCSSME 481 (594)
Q Consensus 403 ~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~ 481 (594)
..+..+++|+.|++++|.... + +..+ ..+++|+.|++++|+....+| .++.+++|++|+|++|...+
T Consensus 200 -~~l~~l~~L~~L~L~~N~l~~-l-~~~l---------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 200 -ASIANLQNLKSLKIRNSPLSA-L-GPAI---------HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp -GGGGGCTTCCEEEEESSCCCC-C-CGGG---------GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred -HhhcCCCCCCEEEccCCCCCc-C-chhh---------ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence 134455555555555544332 2 2222 245555555555555554444 35555555555555554444
Q ss_pred hhhccCccCCCCcccCCCccccccceecccccccccccCCCCccCCCccEEeec
Q 007656 482 EVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKPLPFTHLKEISVG 535 (594)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~l~~L~~L~i~ 535 (594)
.++. .+..+++|+.|+|++|+.++.+|.....+++|+.+.+.
T Consensus 268 ~~p~------------~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 268 TLPL------------DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp BCCT------------TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred hcch------------hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 3332 34555555555555555555555555555555555544
No 21
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=2.7e-23 Score=209.16 Aligned_cols=283 Identities=16% Similarity=0.151 Sum_probs=155.1
Q ss_pred CcccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCccccc-chhhhccCcCcE
Q 007656 221 HLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITEL-PEELKLLVNLKC 298 (594)
Q Consensus 221 ~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~l-p~~i~~L~~L~~ 298 (594)
+++.+++ .++.++.+|..+ .++|++|++++| .+ ..+ |..+..+. +|++|++++|.++.+ |..++++++|++
T Consensus 34 ~l~~l~~-~~~~l~~ip~~~---~~~l~~L~l~~n-~i-~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 34 HLRVVQC-SDLGLKAVPKEI---SPDTTLLDLQNN-DI-SELRKDDFKGLQ-HLYALVLVNNKISKIHEKAFSPLRKLQK 106 (332)
T ss_dssp ETTEEEC-CSSCCSSCCSCC---CTTCCEEECCSS-CC-CEECTTTTTTCT-TCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred cCCEEEC-CCCCccccCCCC---CCCCeEEECCCC-cC-CccCHhHhhCCC-CCcEEECCCCccCccCHhHhhCcCCCCE
Confidence 4566666 455566666542 256666666666 66 444 34566666 666666666666655 445666666666
Q ss_pred EecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhc
Q 007656 299 LNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLS 378 (594)
Q Consensus 299 L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 378 (594)
|++++| .+..+|.. +. ++|++|++++|.+... ....+.++++|+.|+++.+..........
T Consensus 107 L~L~~n-~l~~l~~~-~~--~~L~~L~l~~n~i~~~---------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 167 (332)
T 2ft3_A 107 LYISKN-HLVEIPPN-LP--SSLVELRIHDNRIRKV---------------PKGVFSGLRNMNCIEMGGNPLENSGFEPG 167 (332)
T ss_dssp EECCSS-CCCSCCSS-CC--TTCCEEECCSSCCCCC---------------CSGGGSSCSSCCEEECCSCCCBGGGSCTT
T ss_pred EECCCC-cCCccCcc-cc--ccCCEEECCCCccCcc---------------CHhHhCCCccCCEEECCCCccccCCCCcc
Confidence 666666 56666654 22 5666666666665431 12235566666666666555432211111
Q ss_pred CchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCc
Q 007656 379 SNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLK 458 (594)
Q Consensus 379 ~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~ 458 (594)
..... +|+.|+++.+.+.. ++. .+ .++|+.|++++|.... +.+..+. .+++|+.|++++| .+.
T Consensus 168 ~~~~l-~L~~L~l~~n~l~~-l~~--~~--~~~L~~L~l~~n~i~~-~~~~~l~---------~l~~L~~L~L~~N-~l~ 230 (332)
T 2ft3_A 168 AFDGL-KLNYLRISEAKLTG-IPK--DL--PETLNELHLDHNKIQA-IELEDLL---------RYSKLYRLGLGHN-QIR 230 (332)
T ss_dssp SSCSC-CCSCCBCCSSBCSS-CCS--SS--CSSCSCCBCCSSCCCC-CCTTSST---------TCTTCSCCBCCSS-CCC
T ss_pred cccCC-ccCEEECcCCCCCc-cCc--cc--cCCCCEEECCCCcCCc-cCHHHhc---------CCCCCCEEECCCC-cCC
Confidence 11112 56666664444443 211 11 1567777777754433 2333332 5677777777774 444
Q ss_pred ccc--ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCCCCc-------cCCCc
Q 007656 459 DVT--FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKPL-------PFTHL 529 (594)
Q Consensus 459 ~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~-------~l~~L 529 (594)
.++ .+..+++|++|++++| .++.++. .+..+++|+.|+++++ .++.++.... .+++|
T Consensus 231 ~~~~~~~~~l~~L~~L~L~~N-~l~~lp~------------~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l 296 (332)
T 2ft3_A 231 MIENGSLSFLPTLRELHLDNN-KLSRVPA------------GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYY 296 (332)
T ss_dssp CCCTTGGGGCTTCCEEECCSS-CCCBCCT------------TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCB
T ss_pred cCChhHhhCCCCCCEEECCCC-cCeecCh------------hhhcCccCCEEECCCC-CCCccChhHccccccccccccc
Confidence 443 4667777777777777 4444433 4566777777777776 4666554322 14567
Q ss_pred cEEeecccCCCC-CCCCCCc--CCcCcceEEEcc
Q 007656 530 KEISVGYCRNLK-KLPLDSN--SAKERKFVIRGE 560 (594)
Q Consensus 530 ~~L~i~~C~~L~-~lp~~~~--~~~L~~l~I~~~ 560 (594)
+.|++.++|... .++.... .++|+.+.+.++
T Consensus 297 ~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 297 NGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cceEeecCcccccccCcccccccchhhhhhcccc
Confidence 777777766321 2222211 266666666655
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=4.1e-23 Score=223.88 Aligned_cols=161 Identities=16% Similarity=0.063 Sum_probs=100.8
Q ss_pred hhcceeEEEEeCCCcccccc-cccccCccCCceEEecccCCceeeeecccccc--------------ccc--CCCccCCC
Q 007656 383 KSCIRSLYLHLTGDTASIID-ATVFADLNQLNQLWIDEGIELEELKIDYTEIV--------------RKR--REPFVFRS 445 (594)
Q Consensus 383 ~~~L~~L~L~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~--------------~~~--~~~~~~~~ 445 (594)
+++|+.|+++.+.... ... ...+..+++|+.|++++|.... +++. +... ... .....+++
T Consensus 346 ~~~L~~L~l~~n~l~~-~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSF-KGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp CTTCCEEECCSSCCBE-EEEEEHHHHTCSCCCEEECCSCSEEE-EEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred CCCCCEEeCcCCccCc-cccccccccccCccCEEECCCCcccc-cccc-ccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 3466667764444443 211 2356677788888888765433 2222 2100 001 12345667
Q ss_pred cceEeEecCCCCcccc-ccccCCCCceEeEccCccch-hhhccCccCCCCcccCCCccccccceeccccccccccc-CCC
Q 007656 446 LHCVRIEQCHKLKDVT-FLIFAPNLKSLDLSYCSSME-EVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSI-YWK 522 (594)
Q Consensus 446 L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~-~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l-~~~ 522 (594)
|+.|++++|......| .+..+++|++|++++|.... .++ ..+..+++|+.|++++| .+..+ +..
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p------------~~~~~l~~L~~L~l~~n-~l~~~~~~~ 489 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP------------DIFTELRNLTFLDLSQC-QLEQLSPTA 489 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC------------SCCTTCTTCCEEECTTS-CCCEECTTT
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch------------hhhhcccCCCEEECCCC-ccccCChhh
Confidence 7777777754333333 46677777777777774321 222 36788999999999998 56666 555
Q ss_pred CccCCCccEEeecccCCCCCCCCCC--cCCcCcceEEEcc
Q 007656 523 PLPFTHLKEISVGYCRNLKKLPLDS--NSAKERKFVIRGE 560 (594)
Q Consensus 523 ~~~l~~L~~L~i~~C~~L~~lp~~~--~~~~L~~l~I~~~ 560 (594)
...+++|+.|++++| +++.+|... ..++|+.++++++
T Consensus 490 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 490 FNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred hhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCC
Confidence 567899999999997 678877543 2389999999864
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=1.8e-22 Score=216.18 Aligned_cols=319 Identities=16% Similarity=0.105 Sum_probs=183.8
Q ss_pred CCcccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccccchhhhccCcCcE
Q 007656 220 PHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITELPEELKLLVNLKC 298 (594)
Q Consensus 220 ~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~ 298 (594)
++|++|++ +++.+..+++..|.++++|++|++++| .+ ..+ |..++.+. +|++|++++|.++.+|.. .+++|++
T Consensus 21 ~~L~~L~L-s~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l-~~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~--~l~~L~~ 94 (520)
T 2z7x_B 21 QKTTILNI-SQNYISELWTSDILSLSKLRILIISHN-RI-QYLDISVFKFNQ-ELEYLDLSHNKLVKISCH--PTVNLKH 94 (520)
T ss_dssp TTCSEEEC-CSSCCCCCCHHHHTTCTTCCEEECCSS-CC-CEEEGGGGTTCT-TCCEEECCSSCCCEEECC--CCCCCSE
T ss_pred ccccEEEC-CCCcccccChhhccccccccEEecCCC-cc-CCcChHHhhccc-CCCEEecCCCceeecCcc--ccCCccE
Confidence 57777777 566677777666777777888888777 77 544 66777777 788888877777777765 6777777
Q ss_pred EecCCCCCCCC--cchhhhcCCCCCcEEEecCCCCCccccCCCCc---------------------cccC----------
Q 007656 299 LNLRWTDTLNK--IPRQLISILSWLRVLRMLGTGWFNFLEAPEDS---------------------VLFG---------- 345 (594)
Q Consensus 299 L~L~~~~~l~~--lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~---------------------~~~~---------- 345 (594)
|++++| .+.. +|.. ++++++|++|++++|.+....+..-.. .+..
T Consensus 95 L~L~~N-~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 95 LDLSFN-AFDALPICKE-FGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172 (520)
T ss_dssp EECCSS-CCSSCCCCGG-GGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred EeccCC-ccccccchhh-hccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence 777777 5554 3443 777777777777777654311000000 0000
Q ss_pred ---------------------------C--------cccchHHhcCCCCCcEEEEEEcchhh--HHHHhcCchhhhccee
Q 007656 346 ---------------------------G--------GEVLIQELLGLKYLEVLELTLGSYHA--LQILLSSNKLKSCIRS 388 (594)
Q Consensus 346 ---------------------------~--------~~~~~~~l~~L~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~ 388 (594)
+ ....+..+..+++|+.|+++.+.... +..+... ...++|+.
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~-~~~~~L~~ 251 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL-VWHTTVWY 251 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHH-HHTSSCSE
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHH-hhhCcccE
Confidence 0 00012234455555555555443211 1111100 00124444
Q ss_pred EEEEeCCCc----cc-----------------------cc------------------------ccccccCccCCceEEe
Q 007656 389 LYLHLTGDT----AS-----------------------II------------------------DATVFADLNQLNQLWI 417 (594)
Q Consensus 389 L~L~~~~~~----~~-----------------------~~------------------------~~~~l~~~~~L~~L~l 417 (594)
|+++.+.+. .. ++ ....+..+++|++|++
T Consensus 252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 331 (520)
T 2z7x_B 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331 (520)
T ss_dssp EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEEC
T ss_pred EEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEe
Confidence 444111111 00 00 0000156788889999
Q ss_pred cccCCceeeeecccccccccCCCccCCCcceEeEecCCCCccc---c-ccccCCCCceEeEccCccchhhhccCccC--C
Q 007656 418 DEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDV---T-FLIFAPNLKSLDLSYCSSMEEVISVGKFA--E 491 (594)
Q Consensus 418 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l---~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~--~ 491 (594)
++|..... .+.++ ..+++|+.|++++| .+..+ | .++.+++|++|++++|.....++...... .
T Consensus 332 s~n~l~~~-~~~~~---------~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 332 SNNLLTDT-VFENC---------GHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp CSSCCCTT-TTTTC---------CCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred ECCccChh-hhhhh---------ccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 88765442 23333 25777888888775 44433 2 36777777777777774332244321100 0
Q ss_pred CCc-------c-cCCCccc-cccceecccccccccccCCCCccCCCccEEeecccCCCCCCCCC-C-cCCcCcceEEEcc
Q 007656 492 TPE-------M-MGHISPF-ENLQSLHLSQLPALKSIYWKPLPFTHLKEISVGYCRNLKKLPLD-S-NSAKERKFVIRGE 560 (594)
Q Consensus 492 ~~~-------~-~~~~~~l-~~L~~L~L~~~~~L~~l~~~~~~l~~L~~L~i~~C~~L~~lp~~-~-~~~~L~~l~I~~~ 560 (594)
... + ......+ ++|+.|++++| .++.++.....+++|+.|++++| +++.+|.. . ..++|+.++++++
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCC
Confidence 000 0 0011122 68999999988 68888877778999999999997 68899976 2 2388999998843
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=2.2e-22 Score=212.21 Aligned_cols=281 Identities=17% Similarity=0.183 Sum_probs=171.6
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccch---------
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPE--------- 288 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~--------- 288 (594)
.+++|++|++ +++.+..+++ +.++++|++|++++| .+ ..+|. +..+. +|++|++++|.+..+|.
T Consensus 88 ~l~~L~~L~l-~~n~l~~~~~--~~~l~~L~~L~L~~n-~l-~~~~~-~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~ 160 (466)
T 1o6v_A 88 NLTKLVDILM-NNNQIADITP--LANLTNLTGLTLFNN-QI-TDIDP-LKNLT-NLNRLELSSNTISDISALSGLTSLQQ 160 (466)
T ss_dssp TCTTCCEEEC-CSSCCCCCGG--GTTCTTCCEEECCSS-CC-CCCGG-GTTCT-TCSEEEEEEEEECCCGGGTTCTTCSE
T ss_pred ccccCCEEEC-CCCccccChh--hcCCCCCCEEECCCC-CC-CCChH-HcCCC-CCCEEECCCCccCCChhhccCCcccE
Confidence 5667777777 5555655555 666677777777776 66 55554 66666 66666666666555542
Q ss_pred -----------hhhccCcCcEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCC-CCc----cccCCcccchH
Q 007656 289 -----------ELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAP-EDS----VLFGGGEVLIQ 352 (594)
Q Consensus 289 -----------~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~-~~~----~~~~~~~~~~~ 352 (594)
.+.++++|++|++++| .+..++. +..+++|++|++++|.+....... ..+ .+.++.-....
T Consensus 161 L~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~ 237 (466)
T 1o6v_A 161 LSFGNQVTDLKPLANLTTLERLDISSN-KVSDISV--LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 237 (466)
T ss_dssp EEEEESCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred eecCCcccCchhhccCCCCCEEECcCC-cCCCChh--hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch
Confidence 1445555666666666 4555543 556666666666666554311000 000 00001111122
Q ss_pred HhcCCCCCcEEEEEEcchhhHHHHhcCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccc
Q 007656 353 ELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTE 432 (594)
Q Consensus 353 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~ 432 (594)
.+..+++|+.|+++.+....... ...+++|+.|+++.+.... .+ .+..+++|+.|++++|.... +++ +
T Consensus 238 ~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~-~~---~~~~l~~L~~L~L~~n~l~~-~~~--~- 305 (466)
T 1o6v_A 238 TLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQISN-IS---PLAGLTALTNLELNENQLED-ISP--I- 305 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCCC-CG---GGTTCTTCSEEECCSSCCSC-CGG--G-
T ss_pred hhhcCCCCCEEECCCCccccchh----hhcCCCCCEEECCCCccCc-cc---cccCCCccCeEEcCCCcccC-chh--h-
Confidence 35555666666665554433322 1223466666664444444 21 25666777777777764433 211 2
Q ss_pred cccccCCCccCCCcceEeEecCCCCccccccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccc
Q 007656 433 IVRKRREPFVFRSLHCVRIEQCHKLKDVTFLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQ 512 (594)
Q Consensus 433 ~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 512 (594)
..+++|+.|++++| .+..+++++.+++|+.|++++| .+..++ .+..+++|+.|++++
T Consensus 306 --------~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~~-------------~l~~l~~L~~L~l~~ 362 (466)
T 1o6v_A 306 --------SNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYNN-KVSDVS-------------SLANLTNINWLSAGH 362 (466)
T ss_dssp --------GGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSS-CCCCCG-------------GGTTCTTCCEEECCS
T ss_pred --------cCCCCCCEEECcCC-cCCCchhhccCccCCEeECCCC-ccCCch-------------hhccCCCCCEEeCCC
Confidence 47899999999996 5667767899999999999999 555442 577899999999999
Q ss_pred cccccccCCCCccCCCccEEeecccCCCCCCCCC
Q 007656 513 LPALKSIYWKPLPFTHLKEISVGYCRNLKKLPLD 546 (594)
Q Consensus 513 ~~~L~~l~~~~~~l~~L~~L~i~~C~~L~~lp~~ 546 (594)
| .+..+.. ...+++|+.|++++|+ +..+|..
T Consensus 363 n-~l~~~~~-~~~l~~L~~L~l~~n~-~~~~p~~ 393 (466)
T 1o6v_A 363 N-QISDLTP-LANLTRITQLGLNDQA-WTNAPVN 393 (466)
T ss_dssp S-CCCBCGG-GTTCTTCCEEECCCEE-EECCCBC
T ss_pred C-ccCccch-hhcCCCCCEEeccCCc-ccCCchh
Confidence 8 4666554 5679999999999975 5555543
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=2.2e-22 Score=219.73 Aligned_cols=110 Identities=24% Similarity=0.212 Sum_probs=91.5
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccccc-hhhhccCc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITELP-EELKLLVN 295 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~lp-~~i~~L~~ 295 (594)
++++|++|++ +++.+..+++..|.++++|++|++++| .+ ..+ |..++.+. +|++|++++|.++.+| ..++++++
T Consensus 54 ~l~~L~~L~L-s~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l-~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 54 NFSELQWLDL-SRCEIETIEDKAWHGLHHLSNLILTGN-PI-QSFSPGSFSGLT-SLENLVAVETKLASLESFPIGQLIT 129 (606)
T ss_dssp TCTTCCEEEC-TTCCCCEECTTTTTTCTTCCEEECTTC-CC-CCCCTTSSTTCT-TCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred CCccCcEEeC-CCCcccccCHHHhhchhhcCEeECCCC-cc-cccChhhcCCcc-cCCEEEccCCccccccccccCCCCC
Confidence 7889999999 666788887777888999999999998 88 555 77888888 9999999999888887 47888999
Q ss_pred CcEEecCCCCCCC--CcchhhhcCCCCCcEEEecCCCCCc
Q 007656 296 LKCLNLRWTDTLN--KIPRQLISILSWLRVLRMLGTGWFN 333 (594)
Q Consensus 296 L~~L~L~~~~~l~--~lp~~~~~~L~~L~~L~l~~~~~~~ 333 (594)
|++|++++| .+. .+|.. ++++++|++|++++|.+..
T Consensus 130 L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 130 LKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CCEEECCSS-CCCCCCCCGG-GGTCTTCCEEECCSSCCCE
T ss_pred CCEEeCCCC-cccceechHh-HhhcCCCCEEEccCCccee
Confidence 999999988 565 46765 8889999999998887765
No 26
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=8.5e-23 Score=228.55 Aligned_cols=111 Identities=29% Similarity=0.314 Sum_probs=49.9
Q ss_pred CCCCccccccccccccc-ccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCccc-ccchhhhc--c
Q 007656 218 TCPHLHTLFLASNNSLQ-RITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASIT-ELPEELKL--L 293 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~-~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~-~lp~~i~~--L 293 (594)
.+++|++|++ .++.+. .+|...|.++++|++|++++| .+++.+|..+..+.++|++|++++|.++ .+|..+.. +
T Consensus 316 ~l~~L~~L~L-~~n~l~~~ip~~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 393 (768)
T 3rgz_A 316 SCSLLESLAL-SSNNFSGELPMDTLLKMRGLKVLDLSFN-EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393 (768)
T ss_dssp GCTTCCEEEC-CSSEEEEECCHHHHTTCTTCCEEECCSS-EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTT
T ss_pred cCCCccEEEC-CCCcccCcCCHHHHhcCCCCCEEeCcCC-ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhccc
Confidence 4455555555 233332 555544555566666666655 5523455555544323444444444332 12222222 3
Q ss_pred CcCcEEecCCCCCCC-CcchhhhcCCCCCcEEEecCCCCC
Q 007656 294 VNLKCLNLRWTDTLN-KIPRQLISILSWLRVLRMLGTGWF 332 (594)
Q Consensus 294 ~~L~~L~L~~~~~l~-~lp~~~~~~L~~L~~L~l~~~~~~ 332 (594)
++|++|++++| .+. .+|.. ++++++|++|++++|.+.
T Consensus 394 ~~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 394 NTLQELYLQNN-GFTGKIPPT-LSNCSELVSLHLSFNYLS 431 (768)
T ss_dssp CCCCEEECCSS-EEEEECCGG-GGGCTTCCEEECCSSEEE
T ss_pred CCccEEECCCC-ccccccCHH-HhcCCCCCEEECcCCccc
Confidence 33444444444 222 33332 555555555555555443
No 27
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=7.9e-23 Score=228.78 Aligned_cols=282 Identities=16% Similarity=0.070 Sum_probs=191.6
Q ss_pred CCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCccc-ccchhhhccCcCcEEecCCCCCCCCcchhhhcCCCCCc
Q 007656 244 MPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASIT-ELPEELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLR 322 (594)
Q Consensus 244 l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~ 322 (594)
+++|++|++++| .+++.+|..++.+. +|++|++++|.++ .+|..++++++|++|++++|.....+|.. +..+++|+
T Consensus 393 ~~~L~~L~L~~n-~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~ 469 (768)
T 3rgz_A 393 KNTLQELYLQNN-GFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLE 469 (768)
T ss_dssp TCCCCEEECCSS-EEEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCC
T ss_pred cCCccEEECCCC-ccccccCHHHhcCC-CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCce
Confidence 455666666666 55345666677776 7777777777665 55666777777777777777333355554 66777777
Q ss_pred EEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchh-hHHHHhcCchhhhcceeEEEEeCCCccccc
Q 007656 323 VLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYH-ALQILLSSNKLKSCIRSLYLHLTGDTASII 401 (594)
Q Consensus 323 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 401 (594)
+|++++|.+.. ..+..+.++++|+.|+++.|... .++.. ...+++|+.|+|+.+.+.. .
T Consensus 470 ~L~L~~N~l~~---------------~~p~~l~~l~~L~~L~L~~N~l~~~~p~~---~~~l~~L~~L~L~~N~l~~-~- 529 (768)
T 3rgz_A 470 TLILDFNDLTG---------------EIPSGLSNCTNLNWISLSNNRLTGEIPKW---IGRLENLAILKLSNNSFSG-N- 529 (768)
T ss_dssp EEECCSSCCCS---------------CCCGGGGGCTTCCEEECCSSCCCSCCCGG---GGGCTTCCEEECCSSCCEE-E-
T ss_pred EEEecCCcccC---------------cCCHHHhcCCCCCEEEccCCccCCcCChH---HhcCCCCCEEECCCCcccC-c-
Confidence 77777776653 34556888888898888877654 22222 2234588888886566654 1
Q ss_pred ccccccCccCCceEEecccCCceeeeecccccc-----------------------------------------------
Q 007656 402 DATVFADLNQLNQLWIDEGIELEELKIDYTEIV----------------------------------------------- 434 (594)
Q Consensus 402 ~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~----------------------------------------------- 434 (594)
.+..+..+++|+.|++++|.....++..+....
T Consensus 530 ~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 609 (768)
T 3rgz_A 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGG
T ss_pred CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccc
Confidence 234678889999999998876654433322100
Q ss_pred -------------cccCCCccCCCcceEeEecCCCCcccc-ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCc
Q 007656 435 -------------RKRREPFVFRSLHCVRIEQCHKLKDVT-FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHIS 500 (594)
Q Consensus 435 -------------~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 500 (594)
..++....+++|+.|++++|.....+| .++.+++|+.|+|++|.....+|. .++
T Consensus 610 ~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~------------~l~ 677 (768)
T 3rgz_A 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD------------EVG 677 (768)
T ss_dssp TCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG------------GGG
T ss_pred ccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh------------HHh
Confidence 112233456789999999976555666 689999999999999955445544 788
Q ss_pred cccccceecccccccccccCCCCccCCCccEEeecccCCCCCCCCCCcCCcCcceEEEcc
Q 007656 501 PFENLQSLHLSQLPALKSIYWKPLPFTHLKEISVGYCRNLKKLPLDSNSAKERKFVIRGE 560 (594)
Q Consensus 501 ~l~~L~~L~L~~~~~L~~l~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~L~~l~I~~~ 560 (594)
.+++|+.|+|++|.--..+|.....+++|+.|++++|+--..+|......++....+.++
T Consensus 678 ~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN 737 (768)
T 3rgz_A 678 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNN 737 (768)
T ss_dssp GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSC
T ss_pred CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCC
Confidence 999999999999855557887777899999999999876667887766555555444444
No 28
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=1.5e-22 Score=221.07 Aligned_cols=105 Identities=16% Similarity=0.113 Sum_probs=67.8
Q ss_pred cCCCcceEeEecCCCCccc---c-ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceeccccccccc
Q 007656 442 VFRSLHCVRIEQCHKLKDV---T-FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALK 517 (594)
Q Consensus 442 ~~~~L~~L~L~~c~~l~~l---~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~ 517 (594)
.+++|+.|++++| .+..+ + .++.+++|++|++++|. +..++ +..+..+++|+.|+++++. +.
T Consensus 348 ~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-----------~~~~~~l~~L~~L~l~~n~-l~ 413 (606)
T 3t6q_A 348 NLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLK-----------TEAFKECPQLELLDLAFTR-LK 413 (606)
T ss_dssp TCTTCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSCS-CEEEC-----------TTTTTTCTTCSEEECTTCC-EE
T ss_pred ccCcCCEEECCCC-ccccccCcchhcccCCCCCEEECCCCc-CCcCC-----------HHHhcCCccCCeEECCCCc-CC
Confidence 4556666666664 23332 2 35566666666666663 22221 1367789999999999984 54
Q ss_pred cc-CCC-CccCCCccEEeecccCCCCCC-CCCCc-CCcCcceEEEccH
Q 007656 518 SI-YWK-PLPFTHLKEISVGYCRNLKKL-PLDSN-SAKERKFVIRGEE 561 (594)
Q Consensus 518 ~l-~~~-~~~l~~L~~L~i~~C~~L~~l-p~~~~-~~~L~~l~I~~~~ 561 (594)
.. +.. ...+++|+.|++++|. +... |.... .++|+.+++++|.
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCC-CBTTCTTTTTTCTTCCEEECTTCB
T ss_pred CcccchhhhCcccCCEEECCCCc-cCCcCHHHHhCCCCCCEEECCCCC
Confidence 43 333 4578999999999985 4544 43332 3899999999874
No 29
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=2e-22 Score=220.08 Aligned_cols=307 Identities=18% Similarity=0.083 Sum_probs=199.9
Q ss_pred CCcccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCccccc-chhhhccCcCc
Q 007656 220 PHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITEL-PEELKLLVNLK 297 (594)
Q Consensus 220 ~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~l-p~~i~~L~~L~ 297 (594)
+++++|++ .++.++.++...|.++++|++|++++| .+ ..+ |..+..+. +|++|++++|.++.+ |..++++++|+
T Consensus 32 ~~l~~L~L-s~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l-~~i~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 107 (606)
T 3vq2_A 32 SSTKNIDL-SFNPLKILKSYSFSNFSELQWLDLSRC-EI-ETIEDKAWHGLH-HLSNLILTGNPIQSFSPGSFSGLTSLE 107 (606)
T ss_dssp TTCCEEEC-TTSCCCEECTTTTTTCTTCCEEECTTC-CC-CEECTTTTTTCT-TCCEEECTTCCCCCCCTTSSTTCTTCC
T ss_pred CCcCEEEC-CCCCcCEeChhhccCCccCcEEeCCCC-cc-cccCHHHhhchh-hcCEeECCCCcccccChhhcCCcccCC
Confidence 68999999 778888998877999999999999999 99 666 77889999 999999999999988 67899999999
Q ss_pred EEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhh-----
Q 007656 298 CLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHA----- 372 (594)
Q Consensus 298 ~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~----- 372 (594)
+|++++| .+..++...++++++|++|++++|.+.... .+..++++++|+.|+++.+....
T Consensus 108 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------------lp~~~~~l~~L~~L~Ls~n~l~~~~~~~ 172 (606)
T 3vq2_A 108 NLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCK--------------LPAYFSNLTNLVHVDLSYNYIQTITVND 172 (606)
T ss_dssp EEECTTS-CCCCSSSSCCTTCTTCCEEECCSSCCCCCC--------------CCGGGGTCTTCCEEECCSSCCCEECTTT
T ss_pred EEEccCC-ccccccccccCCCCCCCEEeCCCCccccee--------------chHhHhhcCCCCEEEccCCcceecChhh
Confidence 9999999 788888555999999999999999886421 34567888888888887665322
Q ss_pred HHHHhcCc--------------------hhhhcceeEEEEeCCCccc---------------------------------
Q 007656 373 LQILLSSN--------------------KLKSCIRSLYLHLTGDTAS--------------------------------- 399 (594)
Q Consensus 373 ~~~~~~~~--------------------~~~~~L~~L~L~~~~~~~~--------------------------------- 399 (594)
+..+.... ....+|+.|+++.+.....
T Consensus 173 ~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~ 252 (606)
T 3vq2_A 173 LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252 (606)
T ss_dssp THHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCG
T ss_pred hhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccCh
Confidence 11111000 0111566666633322100
Q ss_pred ---------------------c-cccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCC
Q 007656 400 ---------------------I-IDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKL 457 (594)
Q Consensus 400 ---------------------~-~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l 457 (594)
+ .....+..+++|+.|++++|.... + + ++ ..+++|+.|++++|..
T Consensus 253 ~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~-~l---------~~~~~L~~L~l~~n~l- 319 (606)
T 3vq2_A 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-L-E-DV---------PKHFKWQSLSIIRCQL- 319 (606)
T ss_dssp GGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-C-C-CC---------CTTCCCSEEEEESCCC-
T ss_pred HHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchh-h-h-hc---------cccccCCEEEcccccC-
Confidence 0 001124456677777777654432 2 2 22 2456666666666533
Q ss_pred ccccccccCCCCceEeEccCccchhhhccCccCC-------------CCcccCCCccccccceecccccccccccCCCCc
Q 007656 458 KDVTFLIFAPNLKSLDLSYCSSMEEVISVGKFAE-------------TPEMMGHISPFENLQSLHLSQLPALKSIYWKPL 524 (594)
Q Consensus 458 ~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~-------------~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~ 524 (594)
..+|.+ .+++|++|++++|..+..+.. ..... ....+..+..+++|+.|++++| .+..++....
T Consensus 320 ~~lp~~-~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~ 396 (606)
T 3vq2_A 320 KQFPTL-DLPFLKSLTLTMNKGSISFKK-VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFM 396 (606)
T ss_dssp SSCCCC-CCSSCCEEEEESCSSCEECCC-CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SEEEECCCCT
T ss_pred cccccC-CCCccceeeccCCcCccchhh-ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC-ccccchhhcc
Confidence 555544 566666666665533222100 00000 0000123456777777777776 4666665566
Q ss_pred cCCCccEEeecccCCCCCCCCC--CcCCcCcceEEEccH
Q 007656 525 PFTHLKEISVGYCRNLKKLPLD--SNSAKERKFVIRGEE 561 (594)
Q Consensus 525 ~l~~L~~L~i~~C~~L~~lp~~--~~~~~L~~l~I~~~~ 561 (594)
.+++|+.|++++|.-....|.. ...++|+.+++++|.
T Consensus 397 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 435 (606)
T 3vq2_A 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435 (606)
T ss_dssp TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC
T ss_pred CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC
Confidence 7888888888887533333312 233788888888763
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=2.8e-22 Score=216.32 Aligned_cols=108 Identities=28% Similarity=0.322 Sum_probs=94.2
Q ss_pred CCCcccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccccchh-hhccCcC
Q 007656 219 CPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITELPEE-LKLLVNL 296 (594)
Q Consensus 219 ~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~lp~~-i~~L~~L 296 (594)
.++|++|++ +++.++.+++..|.++++|++|++++| .+ ..+ |..++.+. +|++|++++|.++.+|.. ++++++|
T Consensus 25 ~~~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i-~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 25 TAAMKSLDL-SFNKITYIGHGDLRACANLQVLILKSS-RI-NTIEGDAFYSLG-SLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp CTTCCEEEC-CSSCCCEECSSTTSSCTTCCEEECTTS-CC-CEECTTTTTTCT-TCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCCccEEEC-cCCccCccChhhhhcCCcccEEECCCC-Cc-CccChhhccccc-cCCEEECCCCccCccCHHHhccCCCC
Confidence 368999999 667788887766999999999999999 99 665 57899999 999999999999999874 9999999
Q ss_pred cEEecCCCCCCCCc--chhhhcCCCCCcEEEecCCCCC
Q 007656 297 KCLNLRWTDTLNKI--PRQLISILSWLRVLRMLGTGWF 332 (594)
Q Consensus 297 ~~L~L~~~~~l~~l--p~~~~~~L~~L~~L~l~~~~~~ 332 (594)
++|++++| .+..+ |.. ++++++|++|++++|...
T Consensus 101 ~~L~Ls~n-~l~~~~~~~~-~~~l~~L~~L~L~~n~~~ 136 (549)
T 2z81_A 101 KYLNLMGN-PYQTLGVTSL-FPNLTNLQTLRIGNVETF 136 (549)
T ss_dssp CEEECTTC-CCSSSCSSCS-CTTCTTCCEEEEEESSSC
T ss_pred cEEECCCC-cccccchhhh-hhccCCccEEECCCCccc
Confidence 99999999 67754 453 899999999999999843
No 31
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=9.1e-22 Score=197.80 Aligned_cols=262 Identities=18% Similarity=0.195 Sum_probs=183.0
Q ss_pred CcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCc-hHHhhhhcCcEEEccCCccccc-chhhhccCcCcE
Q 007656 221 HLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPL-AMSELGSSLELLDISYASITEL-PEELKLLVNLKC 298 (594)
Q Consensus 221 ~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~-~i~~l~~~L~~L~ls~~~l~~l-p~~i~~L~~L~~ 298 (594)
+++.+++ .++.+..+|..+ .+.|++|++++| .+ ..+|. .+..+. +|++|++++|.++.+ |..++++++|++
T Consensus 32 ~l~~l~~-~~~~l~~lp~~~---~~~l~~L~L~~n-~i-~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 32 HLRVVQC-SDLGLEKVPKDL---PPDTALLDLQNN-KI-TEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLER 104 (330)
T ss_dssp ETTEEEC-TTSCCCSCCCSC---CTTCCEEECCSS-CC-CCBCTTTTTTCT-TCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CCeEEEe-cCCCccccCccC---CCCCeEEECCCC-cC-CEeChhhhccCC-CCCEEECCCCcCCeeCHHHhcCCCCCCE
Confidence 7889999 777788888763 378999999999 99 77754 788999 999999999999988 678999999999
Q ss_pred EecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhc
Q 007656 299 LNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLS 378 (594)
Q Consensus 299 L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 378 (594)
|++++| .++.+|.. +. ++|++|++++|.+.. .....+.++++|+.|+++.+..........
T Consensus 105 L~Ls~n-~l~~l~~~-~~--~~L~~L~l~~n~l~~---------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 165 (330)
T 1xku_A 105 LYLSKN-QLKELPEK-MP--KTLQELRVHENEITK---------------VRKSVFNGLNQMIVVELGTNPLKSSGIENG 165 (330)
T ss_dssp EECCSS-CCSBCCSS-CC--TTCCEEECCSSCCCB---------------BCHHHHTTCTTCCEEECCSSCCCGGGBCTT
T ss_pred EECCCC-cCCccChh-hc--ccccEEECCCCcccc---------------cCHhHhcCCccccEEECCCCcCCccCcChh
Confidence 999999 78899986 33 799999999998765 245568899999999998776543222222
Q ss_pred CchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCc
Q 007656 379 SNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLK 458 (594)
Q Consensus 379 ~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~ 458 (594)
....+++|+.|+++.+.+.. ++. .+ .++|+.|++++|.... +.+..+. .+++|+.|++++| .+.
T Consensus 166 ~~~~l~~L~~L~l~~n~l~~-l~~--~~--~~~L~~L~l~~n~l~~-~~~~~~~---------~l~~L~~L~Ls~n-~l~ 229 (330)
T 1xku_A 166 AFQGMKKLSYIRIADTNITT-IPQ--GL--PPSLTELHLDGNKITK-VDAASLK---------GLNNLAKLGLSFN-SIS 229 (330)
T ss_dssp GGGGCTTCCEEECCSSCCCS-CCS--SC--CTTCSEEECTTSCCCE-ECTGGGT---------TCTTCCEEECCSS-CCC
T ss_pred hccCCCCcCEEECCCCcccc-CCc--cc--cccCCEEECCCCcCCc-cCHHHhc---------CCCCCCEEECCCC-cCc
Confidence 22334567777775444544 321 11 2677777777764333 3344433 5677777777774 444
Q ss_pred ccc--ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCCCCc-------cCCCc
Q 007656 459 DVT--FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKPL-------PFTHL 529 (594)
Q Consensus 459 ~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~-------~l~~L 529 (594)
.++ .+..+++|++|+|++| .++.++. .+..+++|+.|+++++ .++.++.... ..++|
T Consensus 230 ~~~~~~~~~l~~L~~L~L~~N-~l~~lp~------------~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l 295 (330)
T 1xku_A 230 AVDNGSLANTPHLRELHLNNN-KLVKVPG------------GLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASY 295 (330)
T ss_dssp EECTTTGGGSTTCCEEECCSS-CCSSCCT------------TTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCC
T ss_pred eeChhhccCCCCCCEEECCCC-cCccCCh------------hhccCCCcCEEECCCC-cCCccChhhcCCcccccccccc
Confidence 443 4667777777777777 4444433 4566777777777776 4666654322 23566
Q ss_pred cEEeecccC
Q 007656 530 KEISVGYCR 538 (594)
Q Consensus 530 ~~L~i~~C~ 538 (594)
+.|++++.|
T Consensus 296 ~~l~l~~N~ 304 (330)
T 1xku_A 296 SGVSLFSNP 304 (330)
T ss_dssp SEEECCSSS
T ss_pred cceEeecCc
Confidence 777777655
No 32
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=8.7e-23 Score=203.36 Aligned_cols=252 Identities=17% Similarity=0.180 Sum_probs=164.9
Q ss_pred CCccccccccccccc---ccCchhhcCCCcccEEEccC-CcCcccccCchHHhhhhcCcEEEccCCccc-ccchhhhccC
Q 007656 220 PHLHTLFLASNNSLQ---RITDGFFQLMPSLKVLKMSN-CWNFTLKLPLAMSELGSSLELLDISYASIT-ELPEELKLLV 294 (594)
Q Consensus 220 ~~L~~L~L~~~~~l~---~l~~~~~~~l~~L~~L~L~~-~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~-~lp~~i~~L~ 294 (594)
.+++.|++ .++.+. .+|.. |.++++|++|++++ | .+.+.+|..++.+. +|++|++++|.++ .+|..+.+++
T Consensus 50 ~~l~~L~L-~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n-~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDL-SGLNLPKPYPIPSS-LANLPYLNFLYIGGIN-NLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEE-ECCCCSSCEECCGG-GGGCTTCSEEEEEEET-TEESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEEC-CCCCccCCcccChh-HhCCCCCCeeeCCCCC-cccccCChhHhcCC-CCCEEECcCCeeCCcCCHHHhCCC
Confidence 57999999 555665 56765 89999999999995 7 77467899999999 9999999999998 8888999999
Q ss_pred cCcEEecCCCCCCC-CcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCC-CCcEEEEEEcchhh
Q 007656 295 NLKCLNLRWTDTLN-KIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLK-YLEVLELTLGSYHA 372 (594)
Q Consensus 295 ~L~~L~L~~~~~l~-~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~~L~l~~~~~~~ 372 (594)
+|++|++++| .+. .+|.. +.++++|++|++++|.+.. ..+..+.+++ +|+.|+++.|....
T Consensus 126 ~L~~L~Ls~N-~l~~~~p~~-~~~l~~L~~L~L~~N~l~~---------------~~p~~l~~l~~~L~~L~L~~N~l~~ 188 (313)
T 1ogq_A 126 TLVTLDFSYN-ALSGTLPPS-ISSLPNLVGITFDGNRISG---------------AIPDSYGSFSKLFTSMTISRNRLTG 188 (313)
T ss_dssp TCCEEECCSS-EEESCCCGG-GGGCTTCCEEECCSSCCEE---------------ECCGGGGCCCTTCCEEECCSSEEEE
T ss_pred CCCEEeCCCC-ccCCcCChH-HhcCCCCCeEECcCCcccC---------------cCCHHHhhhhhcCcEEECcCCeeec
Confidence 9999999999 555 67775 8999999999999998763 2555678887 88888887664431
Q ss_pred HHHHhcCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEe
Q 007656 373 LQILLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIE 452 (594)
Q Consensus 373 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~ 452 (594)
. ....+..++ |+.|++++|.... ..+..+. .+++|+.|+++
T Consensus 189 ~----------------------------~~~~~~~l~-L~~L~Ls~N~l~~-~~~~~~~---------~l~~L~~L~L~ 229 (313)
T 1ogq_A 189 K----------------------------IPPTFANLN-LAFVDLSRNMLEG-DASVLFG---------SDKNTQKIHLA 229 (313)
T ss_dssp E----------------------------CCGGGGGCC-CSEEECCSSEEEE-CCGGGCC---------TTSCCSEEECC
T ss_pred c----------------------------CChHHhCCc-ccEEECcCCcccC-cCCHHHh---------cCCCCCEEECC
Confidence 0 111233333 5666666543332 2222222 45566666666
Q ss_pred cCCCCccccccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCCCCccCCCccEE
Q 007656 453 QCHKLKDVTFLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKPLPFTHLKEI 532 (594)
Q Consensus 453 ~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~l~~L~~L 532 (594)
+|.....++.+..+++|++|+|++|.....++. .+..+++|+.|+++++.--..+|.. ..+++|+.+
T Consensus 230 ~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~------------~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l 296 (313)
T 1ogq_A 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ------------GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS 296 (313)
T ss_dssp SSEECCBGGGCCCCTTCCEEECCSSCCEECCCG------------GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGG
T ss_pred CCceeeecCcccccCCCCEEECcCCcccCcCCh------------HHhcCcCCCEEECcCCcccccCCCC-ccccccChH
Confidence 543332344455556666666666532222222 4455566666666665322234433 445566666
Q ss_pred eecccCCCCCCC
Q 007656 533 SVGYCRNLKKLP 544 (594)
Q Consensus 533 ~i~~C~~L~~lp 544 (594)
++.+++.+...|
T Consensus 297 ~l~~N~~lc~~p 308 (313)
T 1ogq_A 297 AYANNKCLCGSP 308 (313)
T ss_dssp GTCSSSEEESTT
T ss_pred HhcCCCCccCCC
Confidence 666555544433
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=6.3e-22 Score=213.90 Aligned_cols=320 Identities=17% Similarity=0.131 Sum_probs=184.4
Q ss_pred CCcccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccccchhhhccCcCcE
Q 007656 220 PHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITELPEELKLLVNLKC 298 (594)
Q Consensus 220 ~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~ 298 (594)
++|++|++ +++.+..+++..|.++++|++|++++| .+ ..+ |..+..+. +|++|++++|.++.+|.. .+++|++
T Consensus 52 ~~L~~L~L-s~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l-~~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~--~l~~L~~ 125 (562)
T 3a79_B 52 PRTKALSL-SQNSISELRMPDISFLSELRVLRLSHN-RI-RSLDFHVFLFNQ-DLEYLDVSHNRLQNISCC--PMASLRH 125 (562)
T ss_dssp TTCCEEEC-CSSCCCCCCGGGTTTCTTCCEEECCSC-CC-CEECTTTTTTCT-TCCEEECTTSCCCEECSC--CCTTCSE
T ss_pred CCcCEEEC-CCCCccccChhhhccCCCccEEECCCC-CC-CcCCHHHhCCCC-CCCEEECCCCcCCccCcc--ccccCCE
Confidence 57888888 666777777666888888888888888 77 555 66677787 888888888888888766 7888888
Q ss_pred EecCCCCCCCCcch-hhhcCCCCCcEEEecCCCCCccccCCCCcc-----------c--cCCc-----------------
Q 007656 299 LNLRWTDTLNKIPR-QLISILSWLRVLRMLGTGWFNFLEAPEDSV-----------L--FGGG----------------- 347 (594)
Q Consensus 299 L~L~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~-----------~--~~~~----------------- 347 (594)
|++++| .+..+|. ..++++++|++|++++|.+....+..-... + .+..
T Consensus 126 L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 204 (562)
T 3a79_B 126 LDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204 (562)
T ss_dssp EECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEEC
T ss_pred EECCCC-CccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEec
Confidence 888888 5666541 237788888888888776643111000000 0 0000
Q ss_pred ----------------------------------ccchHHhcCCCCCcEEEEEEcchhh--HHHHhcCchhhhcceeEEE
Q 007656 348 ----------------------------------EVLIQELLGLKYLEVLELTLGSYHA--LQILLSSNKLKSCIRSLYL 391 (594)
Q Consensus 348 ----------------------------------~~~~~~l~~L~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~L 391 (594)
...+..+..+++|+.+++..+.... +...... ....+|+.|++
T Consensus 205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l 283 (562)
T 3a79_B 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNI 283 (562)
T ss_dssp SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEE
T ss_pred CccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEE
Confidence 0011122233333333333222110 0111100 00125666666
Q ss_pred EeCCCccccccc---------------------------------------------------ccccCccCCceEEeccc
Q 007656 392 HLTGDTASIIDA---------------------------------------------------TVFADLNQLNQLWIDEG 420 (594)
Q Consensus 392 ~~~~~~~~~~~~---------------------------------------------------~~l~~~~~L~~L~l~~~ 420 (594)
+.+.+...++.. .....+++|+.|++++|
T Consensus 284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n 363 (562)
T 3a79_B 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363 (562)
T ss_dssp EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSS
T ss_pred eccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCC
Confidence 222111000000 00156778888888887
Q ss_pred CCceeeeecccccccccCCCccCCCcceEeEecCCCCcccc----ccccCCCCceEeEccCccchhhhccCccCC--CC-
Q 007656 421 IELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDVT----FLIFAPNLKSLDLSYCSSMEEVISVGKFAE--TP- 493 (594)
Q Consensus 421 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~----~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~--~~- 493 (594)
..... .+..+. .+++|+.|++++| .++.++ .++.+++|++|++++|.....++......- ..
T Consensus 364 ~l~~~-~~~~~~---------~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~ 432 (562)
T 3a79_B 364 VFTDS-VFQGCS---------TLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432 (562)
T ss_dssp CCCTT-TTTTCC---------SCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred ccccc-hhhhhc---------ccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence 55442 233332 5667777777774 444433 256667777777776633221332111000 00
Q ss_pred ------cc-cCCCccc-cccceecccccccccccCCCCccCCCccEEeecccCCCCCCCCC-C-cCCcCcceEEEcc
Q 007656 494 ------EM-MGHISPF-ENLQSLHLSQLPALKSIYWKPLPFTHLKEISVGYCRNLKKLPLD-S-NSAKERKFVIRGE 560 (594)
Q Consensus 494 ------~~-~~~~~~l-~~L~~L~L~~~~~L~~l~~~~~~l~~L~~L~i~~C~~L~~lp~~-~-~~~~L~~l~I~~~ 560 (594)
.+ ......+ ++|+.|++++| .++.++.....+++|+.|+++++ +++.+|.. . ..++|+.++++++
T Consensus 433 L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 433 LNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp EECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSC
T ss_pred EECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCC
Confidence 00 0011233 68999999998 78899888788999999999986 68899986 2 3388999998843
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=2.5e-22 Score=210.40 Aligned_cols=297 Identities=15% Similarity=0.108 Sum_probs=153.0
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLK 297 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~ 297 (594)
.+++|++|++ +++.++.+| . +..+++|++|++++| .+ ..+| ++.+. +|++|++++|.++.+| ++++++|+
T Consensus 40 ~l~~L~~L~L-s~n~l~~~~-~-l~~l~~L~~L~Ls~n-~l-~~~~--~~~l~-~L~~L~Ls~N~l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 40 QLATLTSLDC-HNSSITDMT-G-IEKLTGLTKLICTSN-NI-TTLD--LSQNT-NLTYLACDSNKLTNLD--VTPLTKLT 109 (457)
T ss_dssp HHTTCCEEEC-CSSCCCCCT-T-GGGCTTCSEEECCSS-CC-SCCC--CTTCT-TCSEEECCSSCCSCCC--CTTCTTCC
T ss_pred HcCCCCEEEc-cCCCcccCh-h-hcccCCCCEEEccCC-cC-CeEc--cccCC-CCCEEECcCCCCceee--cCCCCcCC
Confidence 5667777777 555666665 2 666777777777777 66 5554 56666 7777777777776665 66677777
Q ss_pred EEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCc----cccCC-cccchHHhcCCCCCcEEEEEEcchhh
Q 007656 298 CLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDS----VLFGG-GEVLIQELLGLKYLEVLELTLGSYHA 372 (594)
Q Consensus 298 ~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~----~~~~~-~~~~~~~l~~L~~L~~L~l~~~~~~~ 372 (594)
+|++++| .++.+| ++.+++|++|++++|.+....+..-.+ ....+ ..... .+..+++|+.|+++.+....
T Consensus 110 ~L~L~~N-~l~~l~---~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 110 YLNCDTN-KLTKLD---VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp EEECCSS-CCSCCC---CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCC
T ss_pred EEECCCC-cCCeec---CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccce
Confidence 7777776 566654 566677777777766665421000000 00000 00000 24455555555555554443
Q ss_pred HHHHhcCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEe
Q 007656 373 LQILLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIE 452 (594)
Q Consensus 373 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~ 452 (594)
++ ...+++|+.|+++.+.+.. + .+..+++|+.|++++|.... + + + ..+++|+.|+++
T Consensus 185 l~-----l~~l~~L~~L~l~~N~l~~-~----~l~~l~~L~~L~Ls~N~l~~-i-p--~---------~~l~~L~~L~l~ 241 (457)
T 3bz5_A 185 LD-----VSQNKLLNRLNCDTNNITK-L----DLNQNIQLTFLDCSSNKLTE-I-D--V---------TPLTQLTYFDCS 241 (457)
T ss_dssp CC-----CTTCTTCCEEECCSSCCSC-C----CCTTCTTCSEEECCSSCCSC-C-C--C---------TTCTTCSEEECC
T ss_pred ec-----cccCCCCCEEECcCCcCCe-e----ccccCCCCCEEECcCCcccc-c-C--c---------cccCCCCEEEee
Confidence 32 1223355555554444444 2 24555666666666554333 2 1 1 245666666666
Q ss_pred cCCCCccccccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCCC--------Cc
Q 007656 453 QCHKLKDVTFLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWK--------PL 524 (594)
Q Consensus 453 ~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~--------~~ 524 (594)
+| .++.+| ++.+++|+.|+++++ .++.+.-.. ....... ..+.+++|+.|++++|+.++.++.. ..
T Consensus 242 ~N-~l~~~~-~~~l~~L~~L~l~~n-~L~~L~l~~-n~~~~~~--~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~ 315 (457)
T 3bz5_A 242 VN-PLTELD-VSTLSKLTTLHCIQT-DLLEIDLTH-NTQLIYF--QAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLS 315 (457)
T ss_dssp SS-CCSCCC-CTTCTTCCEEECTTC-CCSCCCCTT-CTTCCEE--ECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCT
T ss_pred CC-cCCCcC-HHHCCCCCEEeccCC-CCCEEECCC-CccCCcc--cccccccCCEEECCCCcccceeccCCCcceEechh
Confidence 63 344443 334444444443333 222221100 0000000 2356788888888888777766642 11
Q ss_pred cCCCccEEeecccCCCCCCCCCCcCCcCcceEEEcc
Q 007656 525 PFTHLKEISVGYCRNLKKLPLDSNSAKERKFVIRGE 560 (594)
Q Consensus 525 ~l~~L~~L~i~~C~~L~~lp~~~~~~~L~~l~I~~~ 560 (594)
.+++|+.|+++++ +++.++. ...++|+.++++++
T Consensus 316 ~~~~L~~L~L~~N-~l~~l~l-~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 316 QNPKLVYLYLNNT-ELTELDV-SHNTKLKSLSCVNA 349 (457)
T ss_dssp TCTTCCEEECTTC-CCSCCCC-TTCTTCSEEECCSS
T ss_pred hcccCCEEECCCC-ccccccc-ccCCcCcEEECCCC
Confidence 2344455554443 3444442 12367777777654
No 35
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=4.5e-22 Score=200.20 Aligned_cols=274 Identities=19% Similarity=0.157 Sum_probs=204.5
Q ss_pred CCCcccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccccchhhhccCcCc
Q 007656 219 CPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITELPEELKLLVNLK 297 (594)
Q Consensus 219 ~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~ 297 (594)
.++|+.|++ .++.+..+++..|.++++|++|++++| .+ ..+ |..++.+. +|++|++++|.++.+|..+. ++|+
T Consensus 53 ~~~l~~L~l-~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l-~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~--~~L~ 126 (332)
T 2ft3_A 53 SPDTTLLDL-QNNDISELRKDDFKGLQHLYALVLVNN-KI-SKIHEKAFSPLR-KLQKLYISKNHLVEIPPNLP--SSLV 126 (332)
T ss_dssp CTTCCEEEC-CSSCCCEECTTTTTTCTTCCEEECCSS-CC-CEECGGGSTTCT-TCCEEECCSSCCCSCCSSCC--TTCC
T ss_pred CCCCeEEEC-CCCcCCccCHhHhhCCCCCcEEECCCC-cc-CccCHhHhhCcC-CCCEEECCCCcCCccCcccc--ccCC
Confidence 468999999 777788888777999999999999999 89 655 77899999 99999999999999997665 8999
Q ss_pred EEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHh
Q 007656 298 CLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILL 377 (594)
Q Consensus 298 ~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 377 (594)
+|++++| .+..+|...+.++++|++|++++|.+... +..+..+..+ +|+.|+++.+....++..
T Consensus 127 ~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~~~l-~L~~L~l~~n~l~~l~~~- 190 (332)
T 2ft3_A 127 ELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENS-------------GFEPGAFDGL-KLNYLRISEAKLTGIPKD- 190 (332)
T ss_dssp EEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGG-------------GSCTTSSCSC-CCSCCBCCSSBCSSCCSS-
T ss_pred EEECCCC-ccCccCHhHhCCCccCCEEECCCCccccC-------------CCCcccccCC-ccCEEECcCCCCCccCcc-
Confidence 9999999 78889887789999999999999987541 1233346666 888999988876553321
Q ss_pred cCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCC
Q 007656 378 SSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKL 457 (594)
Q Consensus 378 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l 457 (594)
..++|+.|+++.+.+.. . ....+..+++|+.|++++|.... +.+.++. .+++|+.|++++| .+
T Consensus 191 ----~~~~L~~L~l~~n~i~~-~-~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~---------~l~~L~~L~L~~N-~l 253 (332)
T 2ft3_A 191 ----LPETLNELHLDHNKIQA-I-ELEDLLRYSKLYRLGLGHNQIRM-IENGSLS---------FLPTLRELHLDNN-KL 253 (332)
T ss_dssp ----SCSSCSCCBCCSSCCCC-C-CTTSSTTCTTCSCCBCCSSCCCC-CCTTGGG---------GCTTCCEEECCSS-CC
T ss_pred ----ccCCCCEEECCCCcCCc-c-CHHHhcCCCCCCEEECCCCcCCc-CChhHhh---------CCCCCCEEECCCC-cC
Confidence 12589999996666665 3 33468889999999999975544 4444443 6899999999995 66
Q ss_pred cccc-ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceeccccccccc--ccC-CCCccCCCccEEe
Q 007656 458 KDVT-FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALK--SIY-WKPLPFTHLKEIS 533 (594)
Q Consensus 458 ~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~--~l~-~~~~~l~~L~~L~ 533 (594)
..+| .+..+++|++|++++| .++.++........ ....+++|+.|++.+++ +. .+. .....+++|+.++
T Consensus 254 ~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~-----~~~~~~~l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~ 326 (332)
T 2ft3_A 254 SRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVG-----FGVKRAYYNGISLFNNP-VPYWEVQPATFRCVTDRLAIQ 326 (332)
T ss_dssp CBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSS-----CCSSSCCBSEEECCSSS-SCGGGSCGGGGTTBCCSTTEE
T ss_pred eecChhhhcCccCCEEECCCC-CCCccChhHccccc-----cccccccccceEeecCc-ccccccCcccccccchhhhhh
Confidence 7777 5899999999999998 56666442221110 11236889999999986 44 222 2334578888888
Q ss_pred ecccC
Q 007656 534 VGYCR 538 (594)
Q Consensus 534 i~~C~ 538 (594)
++++.
T Consensus 327 l~~n~ 331 (332)
T 2ft3_A 327 FGNYK 331 (332)
T ss_dssp C----
T ss_pred ccccc
Confidence 88764
No 36
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=1.9e-21 Score=215.22 Aligned_cols=227 Identities=19% Similarity=0.203 Sum_probs=154.6
Q ss_pred CCcccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccccch-hhhccCcCc
Q 007656 220 PHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITELPE-ELKLLVNLK 297 (594)
Q Consensus 220 ~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L~ 297 (594)
+++++|++ +++.++.++...|.++++|++|++++| .+ ..+ |..++.+. +|++|++++|.++.+|. .++++++|+
T Consensus 25 ~~l~~L~L-s~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l-~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 25 TNITVLNL-THNQLRRLPAANFTRYSQLTSLDVGFN-TI-SKLEPELCQKLP-MLKVLNLQHNELSQLSDKTFAFCTNLT 100 (680)
T ss_dssp TTCSEEEC-CSSCCCCCCGGGGGGGTTCSEEECCSS-CC-CCCCTTHHHHCT-TCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred CCCcEEEC-CCCCCCCcCHHHHhCCCcCcEEECCCC-cc-CccCHHHHhccc-CcCEEECCCCccCccChhhhccCCCCC
Confidence 68999999 777888898888999999999999999 88 555 77889999 99999999999999997 599999999
Q ss_pred EEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHh
Q 007656 298 CLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILL 377 (594)
Q Consensus 298 ~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 377 (594)
+|++++| .+..+|...++++++|++|++++|.+... .+..+.++++|+.|+++.+....+....
T Consensus 101 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 164 (680)
T 1ziw_A 101 ELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSST---------------KLGTQVQLENLQELLLSNNKIQALKSEE 164 (680)
T ss_dssp EEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCC---------------CCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred EEECCCC-ccCccChhHccccCCCCEEECCCCccccc---------------CchhhcccccCCEEEccCCcccccCHHH
Confidence 9999999 68888865689999999999999987652 2233678888888888877654332211
Q ss_pred cCchhhhcceeEEEEeCCCcccccccccccCc---------------------------cCCceEEecccCCceeeeecc
Q 007656 378 SSNKLKSCIRSLYLHLTGDTASIIDATVFADL---------------------------NQLNQLWIDEGIELEELKIDY 430 (594)
Q Consensus 378 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~---------------------------~~L~~L~l~~~~~~~~l~~~~ 430 (594)
......++|+.|+++.+.+.. . ....+..+ ++|+.|++++|.... +.+.+
T Consensus 165 ~~~~~~~~L~~L~L~~n~l~~-~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~-~~~~~ 241 (680)
T 1ziw_A 165 LDIFANSSLKKLELSSNQIKE-F-SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST-TSNTT 241 (680)
T ss_dssp HGGGTTCEESEEECTTCCCCC-B-CTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE-ECTTT
T ss_pred hhccccccccEEECCCCcccc-c-ChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc-cChhH
Confidence 111112477888874444433 2 11122222 445555555543332 22333
Q ss_pred cccccccCCCccCCCcceEeEecCCCCcccc--ccccCCCCceEeEccC
Q 007656 431 TEIVRKRREPFVFRSLHCVRIEQCHKLKDVT--FLIFAPNLKSLDLSYC 477 (594)
Q Consensus 431 ~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~ 477 (594)
+.. ...++|+.|++++|. +..++ .++.+++|++|++++|
T Consensus 242 ~~~-------l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n 282 (680)
T 1ziw_A 242 FLG-------LKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYN 282 (680)
T ss_dssp TGG-------GGGSCCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSC
T ss_pred hhc-------cCcCCCCEEECCCCC-cCccCcccccCcccccEeeCCCC
Confidence 220 011346666666643 33332 3566666666666666
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=5.3e-22 Score=207.85 Aligned_cols=288 Identities=17% Similarity=0.090 Sum_probs=166.3
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLK 297 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~ 297 (594)
.+++|++|++ +++.++.++ ++.+++|++|++++| .+ ..+| ++.+. +|++|++++|.++.+| ++.+++|+
T Consensus 62 ~l~~L~~L~L-s~n~l~~~~---~~~l~~L~~L~Ls~N-~l-~~~~--~~~l~-~L~~L~L~~N~l~~l~--~~~l~~L~ 130 (457)
T 3bz5_A 62 KLTGLTKLIC-TSNNITTLD---LSQNTNLTYLACDSN-KL-TNLD--VTPLT-KLTYLNCDTNKLTKLD--VSQNPLLT 130 (457)
T ss_dssp GCTTCSEEEC-CSSCCSCCC---CTTCTTCSEEECCSS-CC-SCCC--CTTCT-TCCEEECCSSCCSCCC--CTTCTTCC
T ss_pred ccCCCCEEEc-cCCcCCeEc---cccCCCCCEEECcCC-CC-ceee--cCCCC-cCCEEECCCCcCCeec--CCCCCcCC
Confidence 4555666666 444455543 455555555555555 55 4443 45555 5555555555555554 55555555
Q ss_pred EEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCc-cccCCCCc----cccCC-cccchHHhcCCCCCcEEEEEEcchh
Q 007656 298 CLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFN-FLEAPEDS----VLFGG-GEVLIQELLGLKYLEVLELTLGSYH 371 (594)
Q Consensus 298 ~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~-~~~~~~~~----~~~~~-~~~~~~~l~~L~~L~~L~l~~~~~~ 371 (594)
+|++++| .++.++ ++.+++|++|++++|.... ..+....+ ....+ -...+ +..+++|+.|+++.+...
T Consensus 131 ~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 131 YLNCARN-TLTEID---VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp EEECTTS-CCSCCC---CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCS
T ss_pred EEECCCC-ccceec---cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCC
Confidence 5555555 444442 3444445555544442211 00000000 00000 00121 778899999999988876
Q ss_pred hHHHHhcCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeE
Q 007656 372 ALQILLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRI 451 (594)
Q Consensus 372 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L 451 (594)
.+. ...+++|+.|+++.+.+.. + .+..+++|+.|++++|.... +++..+... ..-.....+|+.|++
T Consensus 205 ~~~-----l~~l~~L~~L~Ls~N~l~~-i----p~~~l~~L~~L~l~~N~l~~-~~~~~l~~L--~~L~l~~n~L~~L~l 271 (457)
T 3bz5_A 205 KLD-----LNQNIQLTFLDCSSNKLTE-I----DVTPLTQLTYFDCSVNPLTE-LDVSTLSKL--TTLHCIQTDLLEIDL 271 (457)
T ss_dssp CCC-----CTTCTTCSEEECCSSCCSC-C----CCTTCTTCSEEECCSSCCSC-CCCTTCTTC--CEEECTTCCCSCCCC
T ss_pred eec-----cccCCCCCEEECcCCcccc-c----CccccCCCCEEEeeCCcCCC-cCHHHCCCC--CEEeccCCCCCEEEC
Confidence 642 2345699999997777777 5 27788999999999976544 332221100 000001125566677
Q ss_pred ecCCCCccccccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCCCCccCCCccE
Q 007656 452 EQCHKLKDVTFLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKPLPFTHLKE 531 (594)
Q Consensus 452 ~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~l~~L~~ 531 (594)
++|.....+| .+.+++|+.|++++|..++.++... ..... -.+..+++|+.|+++++ .++.++ ...+++|+.
T Consensus 272 ~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~--~~L~~--L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~ 343 (457)
T 3bz5_A 272 THNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQA--AGITE--LDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKS 343 (457)
T ss_dssp TTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTT--CCCSC--CCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSE
T ss_pred CCCccCCccc-ccccccCCEEECCCCcccceeccCC--CcceE--echhhcccCCEEECCCC-cccccc--cccCCcCcE
Confidence 7766555555 5788999999999998777765411 11111 13566788888888877 577763 456889999
Q ss_pred EeecccCCCCCCC
Q 007656 532 ISVGYCRNLKKLP 544 (594)
Q Consensus 532 L~i~~C~~L~~lp 544 (594)
|+++++ +++.+|
T Consensus 344 L~l~~N-~l~~l~ 355 (457)
T 3bz5_A 344 LSCVNA-HIQDFS 355 (457)
T ss_dssp EECCSS-CCCBCT
T ss_pred EECCCC-CCCCcc
Confidence 998874 455543
No 38
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=220.84 Aligned_cols=302 Identities=16% Similarity=0.179 Sum_probs=180.9
Q ss_pred CCCcccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCccccc-chhhhccCcC
Q 007656 219 CPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITEL-PEELKLLVNL 296 (594)
Q Consensus 219 ~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~l-p~~i~~L~~L 296 (594)
.+++++|+| +++.++.+++..|.++++|++|++++| ...+.+ |..+..+. +|++|++++|.++.+ |..++++++|
T Consensus 23 p~~l~~LdL-s~N~i~~i~~~~~~~l~~L~~LdLs~n-~~~~~i~~~~f~~L~-~L~~L~Ls~N~l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 23 LNTTERLLL-SFNYIRTVTASSFPFLEQLQLLELGSQ-YTPLTIDKEAFRNLP-NLRILDLGSSKIYFLHPDAFQGLFHL 99 (844)
T ss_dssp CTTCCEEEE-ESCCCCEECSSSCSSCCSCSEEEECTT-CCCCEECTTTTSSCT-TCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred CCCcCEEEC-CCCcCCccChhHCcccccCeEEeCCCC-CCccccCHHHhcCCC-CCCEEECCCCcCcccCHhHccCCccc
Confidence 368899999 667788877666899999999999998 443666 77888898 999999999988877 6689999999
Q ss_pred cEEecCCCCCCCC-cch-hhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhH-
Q 007656 297 KCLNLRWTDTLNK-IPR-QLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHAL- 373 (594)
Q Consensus 297 ~~L~L~~~~~l~~-lp~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~- 373 (594)
++|++++| .+.. +|. ..++++++|++|++++|.+.... ....++++++|+.|+++.|.+...
T Consensus 100 ~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~--------------~~~~~~~L~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 100 FELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY--------------LHPSFGKLNSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp CCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC--------------CCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred CEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccccc--------------cchhHhhCCCCCEEECCCCcCCeeC
Confidence 99999999 5554 343 34788999999999998876521 224588899999999987765321
Q ss_pred -HHHhcCchhhhcceeEEEEeCCCcccccccccccCcc------CCceEEecccCCceeeeecccccc------------
Q 007656 374 -QILLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLN------QLNQLWIDEGIELEELKIDYTEIV------------ 434 (594)
Q Consensus 374 -~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~l~~~~~~~~------------ 434 (594)
..+... ...+|+.|+++.+.... . ....+..++ +|+.|++++|......+.......
T Consensus 165 ~~~l~~l--~~~~L~~L~L~~n~l~~-~-~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 165 EHELEPL--QGKTLSFFSLAANSLYS-R-VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp SGGGHHH--HHCSSCCCEECCSBSCC-C-CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred HHHcccc--cCCccceEECCCCcccc-c-cccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence 111100 01467777774443333 1 111222222 266666666532211100000000
Q ss_pred ----------------------------------------cccCCCccCCCcceEeEecCCCCcccc--ccccCCCCceE
Q 007656 435 ----------------------------------------RKRREPFVFRSLHCVRIEQCHKLKDVT--FLIFAPNLKSL 472 (594)
Q Consensus 435 ----------------------------------------~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L 472 (594)
..+.....+++|+.|+|++| .+..++ .+..+++|++|
T Consensus 241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L 319 (844)
T 3j0a_A 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KINKIADEAFYGLDNLQVL 319 (844)
T ss_dssp SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESC-CCCEECTTTTTTCSSCCEE
T ss_pred ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCC-cCCCCChHHhcCCCCCCEE
Confidence 00011124455555555553 233322 34555555555
Q ss_pred eEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCCC-CccCCCccEEeecccCCCCCCCCCCcCCc
Q 007656 473 DLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWK-PLPFTHLKEISVGYCRNLKKLPLDSNSAK 551 (594)
Q Consensus 473 ~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~-~~~l~~L~~L~i~~C~~L~~lp~~~~~~~ 551 (594)
+|++| .++.++. ..+..+++|+.|+++++ .+..++.. ...+++|+.|++++| .++.++. .++
T Consensus 320 ~Ls~N-~l~~~~~-----------~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~---~~~ 382 (844)
T 3j0a_A 320 NLSYN-LLGELYS-----------SNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDN-ALTTIHF---IPS 382 (844)
T ss_dssp EEESC-CCSCCCS-----------CSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETC-CSCCCSS---CCS
T ss_pred ECCCC-CCCccCH-----------HHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCC-CCCcccC---CCC
Confidence 55555 2222211 24556667777777766 45555543 334677777777765 3555544 356
Q ss_pred CcceEEEcc
Q 007656 552 ERKFVIRGE 560 (594)
Q Consensus 552 L~~l~I~~~ 560 (594)
|+.+.+.++
T Consensus 383 L~~L~l~~N 391 (844)
T 3j0a_A 383 IPDIFLSGN 391 (844)
T ss_dssp CSEEEEESC
T ss_pred cchhccCCC
Confidence 666666654
No 39
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=5e-21 Score=204.97 Aligned_cols=144 Identities=19% Similarity=0.171 Sum_probs=115.7
Q ss_pred ccccccccccccccCchhhcCCCcccEEEccCCcCcccccC-chHHhhhhcCcEEEccCCccccc-chhhhccCcCcEEe
Q 007656 223 HTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLP-LAMSELGSSLELLDISYASITEL-PEELKLLVNLKCLN 300 (594)
Q Consensus 223 ~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp-~~i~~l~~~L~~L~ls~~~l~~l-p~~i~~L~~L~~L~ 300 (594)
++|++ +++.++.+|..+ . ++|++|++++| .+ ..++ ..+..+. +|++|++++|.++.+ |..++++++|++|+
T Consensus 3 ~~l~l-s~n~l~~ip~~~-~--~~L~~L~Ls~n-~i-~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 75 (520)
T 2z7x_B 3 FLVDR-SKNGLIHVPKDL-S--QKTTILNISQN-YI-SELWTSDILSLS-KLRILIISHNRIQYLDISVFKFNQELEYLD 75 (520)
T ss_dssp CEEEC-TTSCCSSCCCSC-C--TTCSEEECCSS-CC-CCCCHHHHTTCT-TCCEEECCSSCCCEEEGGGGTTCTTCCEEE
T ss_pred ceEec-CCCCcccccccc-c--ccccEEECCCC-cc-cccChhhccccc-cccEEecCCCccCCcChHHhhcccCCCEEe
Confidence 57888 777899999873 3 89999999999 99 6664 6899999 999999999999988 56899999999999
Q ss_pred cCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcCc
Q 007656 301 LRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSN 380 (594)
Q Consensus 301 L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~ 380 (594)
+++| .++.+|.. .+++|++|++++|.+.... .+..++++++|+.|+++.+.... ..+
T Consensus 76 Ls~N-~l~~lp~~---~l~~L~~L~L~~N~l~~~~--------------~p~~~~~l~~L~~L~L~~n~l~~-~~~---- 132 (520)
T 2z7x_B 76 LSHN-KLVKISCH---PTVNLKHLDLSFNAFDALP--------------ICKEFGNMSQLKFLGLSTTHLEK-SSV---- 132 (520)
T ss_dssp CCSS-CCCEEECC---CCCCCSEEECCSSCCSSCC--------------CCGGGGGCTTCCEEEEEESSCCG-GGG----
T ss_pred cCCC-ceeecCcc---ccCCccEEeccCCcccccc--------------chhhhccCCcceEEEecCcccch-hhc----
Confidence 9999 78999984 8999999999999886521 34568889999999999887654 111
Q ss_pred hhhhcc--eeEEEEeCCC
Q 007656 381 KLKSCI--RSLYLHLTGD 396 (594)
Q Consensus 381 ~~~~~L--~~L~L~~~~~ 396 (594)
..+++| +.|+++.+..
T Consensus 133 ~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 133 LPIAHLNISKVLLVLGET 150 (520)
T ss_dssp GGGTTSCEEEEEEEECTT
T ss_pred cccccceeeEEEeecccc
Confidence 223355 7777744433
No 40
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=212.52 Aligned_cols=110 Identities=27% Similarity=0.315 Sum_probs=87.5
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccccch-hhhccCc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITELPE-ELKLLVN 295 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~ 295 (594)
++++|++|++ +++.+..+++..|.++++|++|++++| .+ ..+ |..+..+. +|++|++++|.++.+|. .++++++
T Consensus 50 ~l~~L~~L~L-s~n~i~~i~~~~~~~l~~L~~L~L~~n-~l-~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~ 125 (570)
T 2z63_A 50 SFPELQVLDL-SRCEIQTIEDGAYQSLSHLSTLILTGN-PI-QSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKT 125 (570)
T ss_dssp TCSSCCEEEC-TTCCCCEECTTTTTTCTTCCEEECTTC-CC-CEECTTTTTTCT-TCCEEECTTSCCCCSTTCSCTTCTT
T ss_pred CCCCceEEEC-CCCcCCccCcccccCchhCCEEeCcCC-cC-CccCHhhhcCcc-ccccccccccccccCCCcccccccc
Confidence 7888888888 566677787777888888888888888 77 555 46788888 88888888888888876 6888888
Q ss_pred CcEEecCCCCCCCC--cchhhhcCCCCCcEEEecCCCCCc
Q 007656 296 LKCLNLRWTDTLNK--IPRQLISILSWLRVLRMLGTGWFN 333 (594)
Q Consensus 296 L~~L~L~~~~~l~~--lp~~~~~~L~~L~~L~l~~~~~~~ 333 (594)
|++|++++| .+.. +|.. ++++++|++|++++|.+..
T Consensus 126 L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 126 LKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp CCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECTTSCCCE
T ss_pred ccEEecCCC-ccceecChhh-hcccCCCCEEeCcCCccce
Confidence 888888888 5654 5665 8888888888888887764
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=7.7e-21 Score=214.90 Aligned_cols=306 Identities=17% Similarity=0.193 Sum_probs=211.8
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccc-cchh--hhcc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITE-LPEE--LKLL 293 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~-lp~~--i~~L 293 (594)
++++|++|++++|..+..+++..|.++++|++|+|++| .+ ..+ |..++.+. +|++|++++|.++. +|.. ++++
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l-~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KI-YFLHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CC-CEECTTSSCSCS-SCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cC-cccCHhHccCCc-ccCEeeCcCCCCCcccccCcccccc
Confidence 89999999997776788887777999999999999999 88 555 88999999 99999999999885 5554 8999
Q ss_pred CcCcEEecCCCCCCCCcc-hhhhcCCCCCcEEEecCCCCCccccCCCC-----c----cccCC--cccchHHhcCCC---
Q 007656 294 VNLKCLNLRWTDTLNKIP-RQLISILSWLRVLRMLGTGWFNFLEAPED-----S----VLFGG--GEVLIQELLGLK--- 358 (594)
Q Consensus 294 ~~L~~L~L~~~~~l~~lp-~~~~~~L~~L~~L~l~~~~~~~~~~~~~~-----~----~~~~~--~~~~~~~l~~L~--- 358 (594)
++|++|++++| .+..++ ...++++++|++|++++|.+.......-. . ....+ ....+..+..++
T Consensus 123 ~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 201 (844)
T 3j0a_A 123 KALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201 (844)
T ss_dssp SSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTT
T ss_pred CCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcc
Confidence 99999999999 566653 23489999999999999987642111000 0 00000 000111112222
Q ss_pred ---CCcEEEEEEcchhh--HHHHhcCc----------------------------------hhhhcceeEEEEeCCCccc
Q 007656 359 ---YLEVLELTLGSYHA--LQILLSSN----------------------------------KLKSCIRSLYLHLTGDTAS 399 (594)
Q Consensus 359 ---~L~~L~l~~~~~~~--~~~~~~~~----------------------------------~~~~~L~~L~L~~~~~~~~ 399 (594)
+|+.|+++.+.... ...+.... -..++|+.|+++.+....
T Consensus 202 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~- 280 (844)
T 3j0a_A 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS- 280 (844)
T ss_dssp TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE-
T ss_pred ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc-
Confidence 26666666553211 00010000 002457777774444443
Q ss_pred ccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCccc-c-ccccCCCCceEeEccC
Q 007656 400 IIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDV-T-FLIFAPNLKSLDLSYC 477 (594)
Q Consensus 400 ~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~~ 477 (594)
. ....+..+++|+.|++++|.... +.+..+. .+++|+.|+|++| .+..+ + .+..+++|++|++++|
T Consensus 281 ~-~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~---------~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N 348 (844)
T 3j0a_A 281 L-NSRVFETLKDLKVLNLAYNKINK-IADEAFY---------GLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKN 348 (844)
T ss_dssp E-CSCCSSSCCCCCEEEEESCCCCE-ECTTTTT---------TCSSCCEEEEESC-CCSCCCSCSCSSCTTCCEEECCSC
T ss_pred c-ChhhhhcCCCCCEEECCCCcCCC-CChHHhc---------CCCCCCEEECCCC-CCCccCHHHhcCCCCCCEEECCCC
Confidence 2 23467788888889988865544 3444443 6899999999996 55555 3 6899999999999999
Q ss_pred ccchhhhccCccCCCCcccCCCccccccceecccccccccccCCCCccCCCccEEeecccCCCCCCCCCCcCCcCcceEE
Q 007656 478 SSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKPLPFTHLKEISVGYCRNLKKLPLDSNSAKERKFVI 557 (594)
Q Consensus 478 ~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~L~~l~I 557 (594)
.+..++. ..+..+++|+.|+++++ .++.++. +++|+.|.+++| ++..+|.. ..+++.+++
T Consensus 349 -~i~~~~~-----------~~~~~l~~L~~L~Ls~N-~l~~i~~----~~~L~~L~l~~N-~l~~l~~~--~~~l~~L~l 408 (844)
T 3j0a_A 349 -HIAIIQD-----------QTFKFLEKLQTLDLRDN-ALTTIHF----IPSIPDIFLSGN-KLVTLPKI--NLTANLIHL 408 (844)
T ss_dssp -CCCCCCS-----------SCSCSCCCCCEEEEETC-CSCCCSS----CCSCSEEEEESC-CCCCCCCC--CTTCCEEEC
T ss_pred -CCCccCh-----------hhhcCCCCCCEEECCCC-CCCcccC----CCCcchhccCCC-Cccccccc--ccccceeec
Confidence 5555533 35778999999999998 5776654 799999999986 57788765 356777777
Q ss_pred Ecc
Q 007656 558 RGE 560 (594)
Q Consensus 558 ~~~ 560 (594)
+.+
T Consensus 409 s~N 411 (844)
T 3j0a_A 409 SEN 411 (844)
T ss_dssp CSC
T ss_pred ccC
Confidence 754
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=3.3e-21 Score=191.90 Aligned_cols=230 Identities=16% Similarity=0.204 Sum_probs=181.6
Q ss_pred CCCCccccccccccccc-ccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCccc-ccchhhhccCc
Q 007656 218 TCPHLHTLFLASNNSLQ-RITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASIT-ELPEELKLLVN 295 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~-~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~-~lp~~i~~L~~ 295 (594)
++++|++|++++++.+. .+|.. |+++++|++|++++| .+++.+|..+..+. +|++|++++|.++ .+|..+..+++
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~ 150 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAIPDFLSQIK-TLVTLDFSYNALSGTLPPSISSLPN 150 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTT
T ss_pred CCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCC-eeCCcCCHHHhCCC-CCCEEeCCCCccCCcCChHHhcCCC
Confidence 89999999995445555 56665 899999999999999 89458899999999 9999999999998 78989999999
Q ss_pred CcEEecCCCCCCC-CcchhhhcCCC-CCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhH
Q 007656 296 LKCLNLRWTDTLN-KIPRQLISILS-WLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHAL 373 (594)
Q Consensus 296 L~~L~L~~~~~l~-~lp~~~~~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 373 (594)
|++|++++| .+. .+|.. +..++ +|++|++++|.+.. ..+..+..++ |+.|+++.|....
T Consensus 151 L~~L~L~~N-~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~---------------~~~~~~~~l~-L~~L~Ls~N~l~~- 211 (313)
T 1ogq_A 151 LVGITFDGN-RISGAIPDS-YGSFSKLFTSMTISRNRLTG---------------KIPPTFANLN-LAFVDLSRNMLEG- 211 (313)
T ss_dssp CCEEECCSS-CCEEECCGG-GGCCCTTCCEEECCSSEEEE---------------ECCGGGGGCC-CSEEECCSSEEEE-
T ss_pred CCeEECcCC-cccCcCCHH-HhhhhhcCcEEECcCCeeec---------------cCChHHhCCc-ccEEECcCCcccC-
Confidence 999999999 566 78886 88888 99999999998764 2445566666 8888777553321
Q ss_pred HHHhcCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEec
Q 007656 374 QILLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQ 453 (594)
Q Consensus 374 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~ 453 (594)
. ....+..+++|+.|++++|..... .+. + ..+++|+.|++++
T Consensus 212 --------------------------~-~~~~~~~l~~L~~L~L~~N~l~~~-~~~-~---------~~l~~L~~L~Ls~ 253 (313)
T 1ogq_A 212 --------------------------D-ASVLFGSDKNTQKIHLAKNSLAFD-LGK-V---------GLSKNLNGLDLRN 253 (313)
T ss_dssp --------------------------C-CGGGCCTTSCCSEEECCSSEECCB-GGG-C---------CCCTTCCEEECCS
T ss_pred --------------------------c-CCHHHhcCCCCCEEECCCCceeee-cCc-c---------cccCCCCEEECcC
Confidence 1 223677889999999999766542 222 2 3689999999999
Q ss_pred CCCCcccc-ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccC
Q 007656 454 CHKLKDVT-FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIY 520 (594)
Q Consensus 454 c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~ 520 (594)
|.....+| .+..+++|++|+|++|.....+| ....+++|+.|++.+++.+...|
T Consensus 254 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip-------------~~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-------------QGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp SCCEECCCGGGGGCTTCCEEECCSSEEEEECC-------------CSTTGGGSCGGGTCSSSEEESTT
T ss_pred CcccCcCChHHhcCcCCCEEECcCCcccccCC-------------CCccccccChHHhcCCCCccCCC
Confidence 65443566 68999999999999995443443 34789999999999998666543
No 43
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=3.2e-20 Score=200.58 Aligned_cols=149 Identities=21% Similarity=0.214 Sum_probs=116.8
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccC-chHHhhhhcCcEEEccCCccccc-chhhhccCc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLP-LAMSELGSSLELLDISYASITEL-PEELKLLVN 295 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp-~~i~~l~~~L~~L~ls~~~l~~l-p~~i~~L~~ 295 (594)
.|...+++++ +++.++.+|...+ ++|++|++++| .+ ..+| ..+..+. +|++|++++|.++.+ |..+.++++
T Consensus 29 ~~~~~~~l~l-s~~~L~~ip~~~~---~~L~~L~Ls~N-~i-~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~ 101 (562)
T 3a79_B 29 SNELESMVDY-SNRNLTHVPKDLP---PRTKALSLSQN-SI-SELRMPDISFLS-ELRVLRLSHNRIRSLDFHVFLFNQD 101 (562)
T ss_dssp ----CCEEEC-TTSCCCSCCTTSC---TTCCEEECCSS-CC-CCCCGGGTTTCT-TCCEEECCSCCCCEECTTTTTTCTT
T ss_pred ccCCCcEEEc-CCCCCccCCCCCC---CCcCEEECCCC-Cc-cccChhhhccCC-CccEEECCCCCCCcCCHHHhCCCCC
Confidence 4566689999 7778999998632 89999999999 99 7775 6899999 999999999999988 457999999
Q ss_pred CcEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHH
Q 007656 296 LKCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQI 375 (594)
Q Consensus 296 L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 375 (594)
|++|++++| .++.+|.. .+++|++|++++|.+.... .+..++++++|+.|+++.+..... .
T Consensus 102 L~~L~Ls~N-~l~~lp~~---~l~~L~~L~Ls~N~l~~l~--------------~p~~~~~l~~L~~L~L~~n~l~~~-~ 162 (562)
T 3a79_B 102 LEYLDVSHN-RLQNISCC---PMASLRHLDLSFNDFDVLP--------------VCKEFGNLTKLTFLGLSAAKFRQL-D 162 (562)
T ss_dssp CCEEECTTS-CCCEECSC---CCTTCSEEECCSSCCSBCC--------------CCGGGGGCTTCCEEEEECSBCCTT-T
T ss_pred CCEEECCCC-cCCccCcc---ccccCCEEECCCCCccccC--------------chHhhcccCcccEEecCCCccccC-c
Confidence 999999999 78999984 8999999999999987522 235688999999999998876531 1
Q ss_pred HhcCchhhhcc--eeEEEEeCCC
Q 007656 376 LLSSNKLKSCI--RSLYLHLTGD 396 (594)
Q Consensus 376 ~~~~~~~~~~L--~~L~L~~~~~ 396 (594)
+ ..+.+| +.|+++.+..
T Consensus 163 ~----~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 163 L----LPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp T----GGGTTSCEEEEEEEESSC
T ss_pred h----hhhhhceeeEEEeecccc
Confidence 1 112244 7777744433
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=6.6e-21 Score=193.40 Aligned_cols=271 Identities=18% Similarity=0.206 Sum_probs=169.1
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCc-hHHhhhhcCcEEEccCCcccccch-hhhccCc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPL-AMSELGSSLELLDISYASITELPE-ELKLLVN 295 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~-~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~ 295 (594)
.|+.....+. .++.++.+|..++ ++|++|++++| .+ ..+|. .+..+. +|++|++++|.++.++. .+.++++
T Consensus 29 ~C~~~~~c~~-~~~~l~~iP~~~~---~~L~~L~l~~n-~i-~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 29 SCDRNGICKG-SSGSLNSIPSGLT---EAVKSLDLSNN-RI-TYISNSDLQRCV-NLQALVLTSNGINTIEEDSFSSLGS 101 (353)
T ss_dssp EECTTSEEEC-CSTTCSSCCTTCC---TTCCEEECTTS-CC-CEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCCCCeEeeC-CCCCccccccccc---ccCcEEECCCC-cC-cccCHHHhccCC-CCCEEECCCCccCccCHhhcCCCCC
Confidence 3555555666 6667777776532 47788888888 77 66654 677777 88888888887777754 5777888
Q ss_pred CcEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcc-hhhHH
Q 007656 296 LKCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGS-YHALQ 374 (594)
Q Consensus 296 L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~-~~~~~ 374 (594)
|++|++++| .++.+|.+.++++++|++|++++|.+..... ...+.++++|+.|+++.+. ...+.
T Consensus 102 L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--------------~~~~~~l~~L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 102 LEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE--------------TSLFSHLTKLQILRVGNMDTFTKIQ 166 (353)
T ss_dssp CCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTCCCSSSCS--------------SCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred CCEEECCCC-cCCcCCHhHhCCCccCCEEECCCCCCcccCc--------------hhhhccCCCCcEEECCCCccccccC
Confidence 888888887 6777777667778888888888777654211 0136677777777777663 22211
Q ss_pred HHhcCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecC
Q 007656 375 ILLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQC 454 (594)
Q Consensus 375 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 454 (594)
. .....+++|+.|+++.+.... . ....+..+++|++|++++|.... ++.... ..+++|+.|++++|
T Consensus 167 ~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~---------~~~~~L~~L~L~~n 232 (353)
T 2z80_A 167 R--KDFAGLTFLEELEIDASDLQS-Y-EPKSLKSIQNVSHLILHMKQHIL-LLEIFV---------DVTSSVECLELRDT 232 (353)
T ss_dssp T--TTTTTCCEEEEEEEEETTCCE-E-CTTTTTTCSEEEEEEEECSCSTT-HHHHHH---------HHTTTEEEEEEESC
T ss_pred H--HHccCCCCCCEEECCCCCcCc-c-CHHHHhccccCCeecCCCCcccc-chhhhh---------hhcccccEEECCCC
Confidence 0 011223466666665555544 2 23356677778888887765432 222222 24677888888774
Q ss_pred CCCcccc-----ccccCCCCceEeEccCccch----hhhccCccCCCCcccCCCccccccceecccccccccccCCCC-c
Q 007656 455 HKLKDVT-----FLIFAPNLKSLDLSYCSSME----EVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKP-L 524 (594)
Q Consensus 455 ~~l~~l~-----~l~~l~~L~~L~L~~~~~l~----~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~-~ 524 (594)
.++.++ .....+.++.++++++.... .++. .+..+++|+.|+++++ .++.++... .
T Consensus 233 -~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~------------~l~~l~~L~~L~Ls~N-~l~~i~~~~~~ 298 (353)
T 2z80_A 233 -DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK------------LLNQISGLLELEFSRN-QLKSVPDGIFD 298 (353)
T ss_dssp -BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH------------HHHTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred -ccccccccccccccccchhhccccccccccCcchhhhHH------------HHhcccCCCEEECCCC-CCCccCHHHHh
Confidence 444432 23345667777777663211 2222 4566778888888877 677777664 4
Q ss_pred cCCCccEEeecccC
Q 007656 525 PFTHLKEISVGYCR 538 (594)
Q Consensus 525 ~l~~L~~L~i~~C~ 538 (594)
.+++|+.|++++++
T Consensus 299 ~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 299 RLTSLQKIWLHTNP 312 (353)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cCCCCCEEEeeCCC
Confidence 67788888887765
No 45
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=6.5e-21 Score=210.98 Aligned_cols=227 Identities=20% Similarity=0.154 Sum_probs=140.6
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCc-hHHhhhhcCcEEEccCCcccccch-hhhccCc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPL-AMSELGSSLELLDISYASITELPE-ELKLLVN 295 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~-~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~ 295 (594)
++++|++|++ +++.+..+++..|+++++|++|++++| .+ ..+|. .++.+. +|++|++++|.++.+|. .++++++
T Consensus 47 ~l~~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~L~~n-~l-~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~ 122 (680)
T 1ziw_A 47 RYSQLTSLDV-GFNTISKLEPELCQKLPMLKVLNLQHN-EL-SQLSDKTFAFCT-NLTELHLMSNSIQKIKNNPFVKQKN 122 (680)
T ss_dssp GGTTCSEEEC-CSSCCCCCCTTHHHHCTTCCEEECCSS-CC-CCCCTTTTTTCT-TCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred CCCcCcEEEC-CCCccCccCHHHHhcccCcCEEECCCC-cc-CccChhhhccCC-CCCEEECCCCccCccChhHccccCC
Confidence 7788888888 666777777777888888888888888 88 77765 578888 88888888888888874 6888888
Q ss_pred CcEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHh--cCCCCCcEEEEEEcchhhH
Q 007656 296 LKCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQEL--LGLKYLEVLELTLGSYHAL 373 (594)
Q Consensus 296 L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~L~~L~~L~l~~~~~~~~ 373 (594)
|++|++++| .+..++.+.++++++|++|++++|.+... .+..+ ..+++|+.|+++.+....+
T Consensus 123 L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------~~~~~~~~~~~~L~~L~L~~n~l~~~ 186 (680)
T 1ziw_A 123 LITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQAL---------------KSEELDIFANSSLKKLELSSNQIKEF 186 (680)
T ss_dssp CCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCCB---------------CHHHHGGGTTCEESEEECTTCCCCCB
T ss_pred CCEEECCCC-cccccCchhhcccccCCEEEccCCccccc---------------CHHHhhccccccccEEECCCCccccc
Confidence 888888888 56666554577888888888888876542 11111 1234444444443322110
Q ss_pred H--------------------------HHhcCchhhhcceeEEEEeCCCcccccccccccCcc--CCceEEecccCCcee
Q 007656 374 Q--------------------------ILLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLN--QLNQLWIDEGIELEE 425 (594)
Q Consensus 374 ~--------------------------~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~ 425 (594)
. .+... -...+|+.|+++.+.... . ....+..++ +|+.|++++|....
T Consensus 187 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~-l~~~~L~~L~L~~n~l~~-~-~~~~~~~l~~~~L~~L~Ls~n~l~~- 262 (680)
T 1ziw_A 187 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE-LANTSIRNLSLSNSQLST-T-SNTTFLGLKWTNLTMLDLSYNNLNV- 262 (680)
T ss_dssp CTTGGGGSSEECEEECTTCCCHHHHHHHHHHH-HTTSCCCEEECTTSCCCE-E-CTTTTGGGGGSCCCEEECTTSCCCE-
T ss_pred ChhhhhhhhhhhhhhccccccChhhHHHHHHH-hhhccccEEEccCCcccc-c-ChhHhhccCcCCCCEEECCCCCcCc-
Confidence 0 00000 011356666664344433 2 122344443 37777777765433
Q ss_pred eeecccccccccCCCccCCCcceEeEecCCCCcccc-ccccCCCCceEeEccC
Q 007656 426 LKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDVT-FLIFAPNLKSLDLSYC 477 (594)
Q Consensus 426 l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~ 477 (594)
+.+.++. .+++|+.|++++|......| .+..+++|++|++++|
T Consensus 263 ~~~~~~~---------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 263 VGNDSFA---------WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp ECTTTTT---------TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred cCccccc---------CcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 3334433 56677777777643222222 4666666666666654
No 46
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=2.8e-20 Score=204.16 Aligned_cols=104 Identities=15% Similarity=0.137 Sum_probs=76.7
Q ss_pred ccCCCcceEeEecCCCCccc-c-ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccc
Q 007656 441 FVFRSLHCVRIEQCHKLKDV-T-FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKS 518 (594)
Q Consensus 441 ~~~~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~ 518 (594)
..+++|+.|++++|.....+ | .+..+++|++|+|++| .++.++. ..+..+++|+.|+|+++ +++.
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~-----------~~f~~l~~L~~L~Ls~N-~l~~ 532 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSP-----------TAFNSLSSLQVLNMSHN-NFFS 532 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-----------TTTTTCTTCCEEECTTS-CCCB
T ss_pred ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcCh-----------HHHcCCCCCCEEECCCC-cCCC
Confidence 35667778888776545443 3 4778888888888888 5555543 36788999999999998 6888
Q ss_pred cCCC-CccCCCccEEeecccCCCCCCCCCCc-C--CcCcceEEE
Q 007656 519 IYWK-PLPFTHLKEISVGYCRNLKKLPLDSN-S--AKERKFVIR 558 (594)
Q Consensus 519 l~~~-~~~l~~L~~L~i~~C~~L~~lp~~~~-~--~~L~~l~I~ 558 (594)
++.. ...+++|+.|+++++ ++..++.... . ++|+.++++
T Consensus 533 l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~ 575 (635)
T 4g8a_A 533 LDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLT 575 (635)
T ss_dssp CCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECT
T ss_pred CChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEee
Confidence 7654 346899999999986 5777654432 2 679999986
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=1.7e-20 Score=186.31 Aligned_cols=241 Identities=17% Similarity=0.172 Sum_probs=136.7
Q ss_pred cccccccccccccCchhhcCCCcccEEEccCCcCcccccCch-HHhhhhcCcEEEccCCccccc---chhhhccCcCcEE
Q 007656 224 TLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLA-MSELGSSLELLDISYASITEL---PEELKLLVNLKCL 299 (594)
Q Consensus 224 ~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~-i~~l~~~L~~L~ls~~~l~~l---p~~i~~L~~L~~L 299 (594)
.++. ..+.++.+|..+ .++|++|++++| .+ ..+|.. +..+. +|++|++++|.++.+ |..+..+++|++|
T Consensus 11 ~l~c-~~~~l~~ip~~~---~~~l~~L~L~~n-~l-~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 83 (306)
T 2z66_A 11 EIRC-NSKGLTSVPTGI---PSSATRLELESN-KL-QSLPHGVFDKLT-QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83 (306)
T ss_dssp EEEC-CSSCCSSCCSCC---CTTCCEEECCSS-CC-CCCCTTTTTTCT-TCSEEECCSSCCCEEEEEEHHHHSCSCCCEE
T ss_pred EEEc-CCCCcccCCCCC---CCCCCEEECCCC-cc-CccCHhHhhccc-cCCEEECCCCccCcccCcccccccccccCEE
Confidence 4455 455566666542 256777777777 67 666554 45666 777777777766644 4566667777777
Q ss_pred ecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcC
Q 007656 300 NLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSS 379 (594)
Q Consensus 300 ~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 379 (594)
++++| .+..+|.. +..+++|++|++++|.+.... ....+.++++|+.|+++.+...
T Consensus 84 ~Ls~n-~i~~l~~~-~~~l~~L~~L~l~~n~l~~~~--------------~~~~~~~l~~L~~L~l~~n~l~-------- 139 (306)
T 2z66_A 84 DLSFN-GVITMSSN-FLGLEQLEHLDFQHSNLKQMS--------------EFSVFLSLRNLIYLDISHTHTR-------- 139 (306)
T ss_dssp ECCSC-SEEEEEEE-EETCTTCCEEECTTSEEESST--------------TTTTTTTCTTCCEEECTTSCCE--------
T ss_pred ECCCC-ccccChhh-cCCCCCCCEEECCCCcccccc--------------cchhhhhccCCCEEECCCCcCC--------
Confidence 77777 56666665 667777777777776654311 1123455555555555433211
Q ss_pred chhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCcc
Q 007656 380 NKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKD 459 (594)
Q Consensus 380 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~ 459 (594)
. . ....+..+++|+.|++++|.......+..+. .+++|+.|++++| .+..
T Consensus 140 ------------------~-~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------~l~~L~~L~Ls~n-~l~~ 189 (306)
T 2z66_A 140 ------------------V-A-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFT---------ELRNLTFLDLSQC-QLEQ 189 (306)
T ss_dssp ------------------E-C-STTTTTTCTTCCEEECTTCEEGGGEECSCCT---------TCTTCCEEECTTS-CCCE
T ss_pred ------------------c-c-chhhcccCcCCCEEECCCCccccccchhHHh---------hCcCCCEEECCCC-CcCC
Confidence 1 1 1124555666777777665443322333332 5666777777764 3444
Q ss_pred c-c-ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceeccccccccccc-CCCCccCC-CccEEeec
Q 007656 460 V-T-FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSI-YWKPLPFT-HLKEISVG 535 (594)
Q Consensus 460 l-~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l-~~~~~~l~-~L~~L~i~ 535 (594)
+ | .+..+++|++|++++| .++.++. ..+..+++|+.|+++++. +... +.....+| +|+.|+++
T Consensus 190 ~~~~~~~~l~~L~~L~L~~N-~l~~~~~-----------~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 190 LSPTAFNSLSSLQVLNMSHN-NFFSLDT-----------FPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLT 256 (306)
T ss_dssp ECTTTTTTCTTCCEEECTTS-CCSBCCS-----------GGGTTCTTCCEEECTTSC-CCBCSSSSCCCCCTTCCEEECT
T ss_pred cCHHHhcCCCCCCEEECCCC-ccCccCh-----------hhccCcccCCEeECCCCC-CcccCHHHHHhhhccCCEEEcc
Confidence 4 2 4666677777777766 3333321 134556677777777663 3333 23333453 67777766
Q ss_pred ccC
Q 007656 536 YCR 538 (594)
Q Consensus 536 ~C~ 538 (594)
+++
T Consensus 257 ~N~ 259 (306)
T 2z66_A 257 QND 259 (306)
T ss_dssp TCC
T ss_pred CCC
Confidence 654
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=5.5e-20 Score=193.09 Aligned_cols=241 Identities=18% Similarity=0.167 Sum_probs=184.3
Q ss_pred cccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccccc-hhhhccCcCcEE
Q 007656 222 LHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITELP-EELKLLVNLKCL 299 (594)
Q Consensus 222 L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~lp-~~i~~L~~L~~L 299 (594)
.+.++. .+..++.+|..+ .++|++|+|++| .+ ..+ |..+..+. +|++|++++|.++.++ ..+.++++|++|
T Consensus 56 ~~~v~c-~~~~l~~iP~~~---~~~l~~L~L~~n-~i-~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 128 (452)
T 3zyi_A 56 FSKVVC-TRRGLSEVPQGI---PSNTRYLNLMEN-NI-QMIQADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGLASLNTL 128 (452)
T ss_dssp SCEEEC-CSSCCSSCCSCC---CTTCSEEECCSS-CC-CEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CcEEEE-CCCCcCccCCCC---CCCccEEECcCC-cC-ceECHHHcCCCC-CCCEEECCCCccCCcChhhccCcccCCEE
Confidence 456666 667788888763 368999999999 88 555 77889999 9999999999999887 478999999999
Q ss_pred ecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcC
Q 007656 300 NLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSS 379 (594)
Q Consensus 300 ~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 379 (594)
++++| .++.+|.+.+..+++|++|++++|.+... ....+.++++|+.|+++.
T Consensus 129 ~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l~~L~~L~l~~------------ 180 (452)
T 3zyi_A 129 ELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIESI---------------PSYAFNRVPSLMRLDLGE------------ 180 (452)
T ss_dssp ECCSS-CCSBCCTTTSSSCTTCCEEECCSCCCCEE---------------CTTTTTTCTTCCEEECCC------------
T ss_pred ECCCC-cCCccChhhhcccCCCCEEECCCCCccee---------------CHhHHhcCCcccEEeCCC------------
Confidence 99999 78899887788999999999999987652 222366777777776653
Q ss_pred chhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCcc
Q 007656 380 NKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKD 459 (594)
Q Consensus 380 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~ 459 (594)
++.... + ....+..+++|+.|++++|.... + +.. ..+++|+.|+|++| .+..
T Consensus 181 -------------~~~l~~-i-~~~~~~~l~~L~~L~L~~n~l~~-~-~~~----------~~l~~L~~L~Ls~N-~l~~ 232 (452)
T 3zyi_A 181 -------------LKKLEY-I-SEGAFEGLFNLKYLNLGMCNIKD-M-PNL----------TPLVGLEELEMSGN-HFPE 232 (452)
T ss_dssp -------------CTTCCE-E-CTTTTTTCTTCCEEECTTSCCSS-C-CCC----------TTCTTCCEEECTTS-CCSE
T ss_pred -------------CCCccc-c-ChhhccCCCCCCEEECCCCcccc-c-ccc----------cccccccEEECcCC-cCcc
Confidence 222222 2 22357788999999999976544 2 322 36889999999995 4555
Q ss_pred c-c-ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCCCC-ccCCCccEEeecc
Q 007656 460 V-T-FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKP-LPFTHLKEISVGY 536 (594)
Q Consensus 460 l-~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~-~~l~~L~~L~i~~ 536 (594)
+ | .+..+++|+.|+|++| .+..+.. ..+..+++|+.|+|+++ .++.++... ..+++|+.|++++
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n-~l~~~~~-----------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNS-QVSLIER-----------NAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTS-CCCEECT-----------TTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCS
T ss_pred cCcccccCccCCCEEEeCCC-cCceECH-----------HHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccC
Confidence 5 3 5889999999999998 4554432 35778899999999998 688877654 3588999999988
Q ss_pred cC
Q 007656 537 CR 538 (594)
Q Consensus 537 C~ 538 (594)
+|
T Consensus 300 Np 301 (452)
T 3zyi_A 300 NP 301 (452)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=7e-20 Score=191.56 Aligned_cols=241 Identities=17% Similarity=0.194 Sum_probs=144.3
Q ss_pred cccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccccch-hhhccCcCcEE
Q 007656 222 LHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITELPE-ELKLLVNLKCL 299 (594)
Q Consensus 222 L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L~~L 299 (594)
.+.++. .+..++.+|..+ .+++++|+|++| .+ ..+ +..+..+. +|++|++++|.++.++. .+.++++|++|
T Consensus 45 ~~~v~c-~~~~l~~iP~~~---~~~l~~L~L~~n-~i-~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L 117 (440)
T 3zyj_A 45 FSKVIC-VRKNLREVPDGI---STNTRLLNLHEN-QI-QIIKVNSFKHLR-HLEILQLSRNHIRTIEIGAFNGLANLNTL 117 (440)
T ss_dssp SCEEEC-CSCCCSSCCSCC---CTTCSEEECCSC-CC-CEECTTTTSSCS-SCCEEECCSSCCCEECGGGGTTCSSCCEE
T ss_pred CCEEEe-CCCCcCcCCCCC---CCCCcEEEccCC-cC-CeeCHHHhhCCC-CCCEEECCCCcCCccChhhccCCccCCEE
Confidence 455666 566777888753 267888888888 78 555 46777887 88888888888887764 67888888888
Q ss_pred ecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcc-hhhHHHHhc
Q 007656 300 NLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGS-YHALQILLS 378 (594)
Q Consensus 300 ~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~-~~~~~~~~~ 378 (594)
++++| .++.+|.+.+..+++|++|++++|.+... ....+.++++|+.|+++.+. ...+.. .
T Consensus 118 ~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~---------------~~~~~~~l~~L~~L~l~~~~~l~~i~~--~ 179 (440)
T 3zyj_A 118 ELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIESI---------------PSYAFNRIPSLRRLDLGELKRLSYISE--G 179 (440)
T ss_dssp ECCSS-CCSSCCTTTSCSCSSCCEEECCSCCCCEE---------------CTTTTTTCTTCCEEECCCCTTCCEECT--T
T ss_pred ECCCC-cCCeeCHhHhhccccCceeeCCCCccccc---------------CHHHhhhCcccCEeCCCCCCCcceeCc--c
Confidence 88888 67888876688888888888888877642 22236677777777776422 111110 0
Q ss_pred CchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCc
Q 007656 379 SNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLK 458 (594)
Q Consensus 379 ~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~ 458 (594)
....+++|+.|+++.+.+.. ++ .+..+++|+.|++++|... .+.+..+. .+++|+.|++++| .+.
T Consensus 180 ~~~~l~~L~~L~L~~n~l~~-~~---~~~~l~~L~~L~Ls~N~l~-~~~~~~~~---------~l~~L~~L~L~~n-~l~ 244 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAMCNLRE-IP---NLTPLIKLDELDLSGNHLS-AIRPGSFQ---------GLMHLQKLWMIQS-QIQ 244 (440)
T ss_dssp TTTTCSSCCEEECTTSCCSS-CC---CCTTCSSCCEEECTTSCCC-EECTTTTT---------TCTTCCEEECTTC-CCC
T ss_pred hhhcccccCeecCCCCcCcc-cc---ccCCCcccCEEECCCCccC-ccChhhhc---------cCccCCEEECCCC-cee
Confidence 01112345555553333333 21 3455556666666665332 23333332 4566666666653 344
Q ss_pred ccc--ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccc
Q 007656 459 DVT--FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLP 514 (594)
Q Consensus 459 ~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 514 (594)
.++ .+..+++|++|+|++| .++.++. ..+..+++|+.|+|++++
T Consensus 245 ~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-----------~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 245 VIERNAFDNLQSLVEINLAHN-NLTLLPH-----------DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EECTTSSTTCTTCCEEECTTS-CCCCCCT-----------TTTSSCTTCCEEECCSSC
T ss_pred EEChhhhcCCCCCCEEECCCC-CCCccCh-----------hHhccccCCCEEEcCCCC
Confidence 433 3555666666666665 3433322 134455666666666543
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=2e-20 Score=201.78 Aligned_cols=253 Identities=20% Similarity=0.165 Sum_probs=164.5
Q ss_pred CcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCcEEe
Q 007656 221 HLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLKCLN 300 (594)
Q Consensus 221 ~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L~ 300 (594)
+++.|++ +++.++.+|..+ . ++|++|++++| .+ ..+|. .+. +|++|++++|.++.+|. .+++|++|+
T Consensus 41 ~l~~L~l-s~n~L~~lp~~l-~--~~L~~L~L~~N-~l-~~lp~---~l~-~L~~L~Ls~N~l~~lp~---~l~~L~~L~ 107 (622)
T 3g06_A 41 GNAVLNV-GESGLTTLPDCL-P--AHITTLVIPDN-NL-TSLPA---LPP-ELRTLEVSGNQLTSLPV---LPPGLLELS 107 (622)
T ss_dssp CCCEEEC-CSSCCSCCCSCC-C--TTCSEEEECSC-CC-SCCCC---CCT-TCCEEEECSCCCSCCCC---CCTTCCEEE
T ss_pred CCcEEEe-cCCCcCccChhh-C--CCCcEEEecCC-CC-CCCCC---cCC-CCCEEEcCCCcCCcCCC---CCCCCCEEE
Confidence 5677777 666677777653 2 67888888888 77 67776 355 78888888887777775 667788888
Q ss_pred cCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcCc
Q 007656 301 LRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSN 380 (594)
Q Consensus 301 L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~ 380 (594)
+++| .+..+|. .+++|+.|++++|.+... +. .+++|+.|+++.|....++.
T Consensus 108 Ls~N-~l~~l~~----~l~~L~~L~L~~N~l~~l----------------p~---~l~~L~~L~Ls~N~l~~l~~----- 158 (622)
T 3g06_A 108 IFSN-PLTHLPA----LPSGLCKLWIFGNQLTSL----------------PV---LPPGLQELSVSDNQLASLPA----- 158 (622)
T ss_dssp ECSC-CCCCCCC----CCTTCCEEECCSSCCSCC----------------CC---CCTTCCEEECCSSCCSCCCC-----
T ss_pred CcCC-cCCCCCC----CCCCcCEEECCCCCCCcC----------------CC---CCCCCCEEECcCCcCCCcCC-----
Confidence 8877 6777765 456777888877776541 11 23677777777766554322
Q ss_pred hhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCccc
Q 007656 381 KLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDV 460 (594)
Q Consensus 381 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l 460 (594)
...+|+.|++..+.+.. ++ ..+++|+.|++++|.... + +. .+++|+.|++++| .++.+
T Consensus 159 -~~~~L~~L~L~~N~l~~-l~-----~~~~~L~~L~Ls~N~l~~-l-~~------------~~~~L~~L~L~~N-~l~~l 216 (622)
T 3g06_A 159 -LPSELCKLWAYNNQLTS-LP-----MLPSGLQELSVSDNQLAS-L-PT------------LPSELYKLWAYNN-RLTSL 216 (622)
T ss_dssp -CCTTCCEEECCSSCCSC-CC-----CCCTTCCEEECCSSCCSC-C-CC------------CCTTCCEEECCSS-CCSSC
T ss_pred -ccCCCCEEECCCCCCCC-Cc-----ccCCCCcEEECCCCCCCC-C-CC------------ccchhhEEECcCC-ccccc
Confidence 12467777775555555 32 445777788887764432 2 11 3567777777774 55555
Q ss_pred cccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCCCCccCCCccEEeecccCCC
Q 007656 461 TFLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKPLPFTHLKEISVGYCRNL 540 (594)
Q Consensus 461 ~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~l~~L~~L~i~~C~~L 540 (594)
|. .+++|++|++++| .++.++ ..+++|+.|+|++| .++.++. .+++|+.|++++| ++
T Consensus 217 ~~--~~~~L~~L~Ls~N-~L~~lp---------------~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L 273 (622)
T 3g06_A 217 PA--LPSGLKELIVSGN-RLTSLP---------------VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QL 273 (622)
T ss_dssp CC--CCTTCCEEECCSS-CCSCCC---------------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CC
T ss_pred CC--CCCCCCEEEccCC-ccCcCC---------------CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CC
Confidence 53 2467777777777 444432 34567777777776 5666665 4577777777775 56
Q ss_pred CCCCCCCcC-CcCcceEEEcc
Q 007656 541 KKLPLDSNS-AKERKFVIRGE 560 (594)
Q Consensus 541 ~~lp~~~~~-~~L~~l~I~~~ 560 (594)
+.+|..... ++|+.++++++
T Consensus 274 ~~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 274 TRLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp CSCCGGGGGSCTTCEEECCSC
T ss_pred CcCCHHHhhccccCEEEecCC
Confidence 677654333 67777777755
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=3.5e-20 Score=188.02 Aligned_cols=274 Identities=18% Similarity=0.129 Sum_probs=202.1
Q ss_pred cCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccch-hhhccCcCcEEecCCCCCCCCcchhhhcCCCC
Q 007656 242 QLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPE-ELKLLVNLKCLNLRWTDTLNKIPRQLISILSW 320 (594)
Q Consensus 242 ~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~ 320 (594)
..++...+.+.+++ .+ +.+|..+. . +|++|++++|.++.+|. .+.++++|++|++++| .++.++.+.+.++++
T Consensus 28 ~~C~~~~~c~~~~~-~l-~~iP~~~~--~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 28 LSCDRNGICKGSSG-SL-NSIPSGLT--E-AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGS 101 (353)
T ss_dssp CEECTTSEEECCST-TC-SSCCTTCC--T-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTT
T ss_pred CCCCCCeEeeCCCC-Cc-cccccccc--c-cCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCC
Confidence 34566667899999 99 99998654 4 99999999999999987 7999999999999999 788887666999999
Q ss_pred CcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcCchhhhcceeEEEEeC-CCccc
Q 007656 321 LRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLHLT-GDTAS 399 (594)
Q Consensus 321 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~ 399 (594)
|++|++++|.+.. .....+.++++|+.|+++.|....+... .....+++|+.|+++.+ ....
T Consensus 102 L~~L~Ls~n~l~~---------------~~~~~~~~l~~L~~L~L~~n~l~~l~~~-~~~~~l~~L~~L~l~~n~~~~~- 164 (353)
T 2z80_A 102 LEHLDLSYNYLSN---------------LSSSWFKPLSSLTFLNLLGNPYKTLGET-SLFSHLTKLQILRVGNMDTFTK- 164 (353)
T ss_dssp CCEEECCSSCCSS---------------CCHHHHTTCTTCSEEECTTCCCSSSCSS-CSCTTCTTCCEEEEEESSSCCE-
T ss_pred CCEEECCCCcCCc---------------CCHhHhCCCccCCEEECCCCCCcccCch-hhhccCCCCcEEECCCCccccc-
Confidence 9999999998875 1334488999999999998876644320 12234569999999544 4444
Q ss_pred ccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCcccc--ccccCCCCceEeEccC
Q 007656 400 IIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDVT--FLIFAPNLKSLDLSYC 477 (594)
Q Consensus 400 ~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~ 477 (594)
+ ....+..+++|+.|++++|.... +.+..+. .+++|+.|++++| .+..+| .+..+++|++|++++|
T Consensus 165 ~-~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~---------~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 165 I-QRKDFAGLTFLEELEIDASDLQS-YEPKSLK---------SIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp E-CTTTTTTCCEEEEEEEEETTCCE-ECTTTTT---------TCSEEEEEEEECS-CSTTHHHHHHHHTTTEEEEEEESC
T ss_pred c-CHHHccCCCCCCEEECCCCCcCc-cCHHHHh---------ccccCCeecCCCC-ccccchhhhhhhcccccEEECCCC
Confidence 3 33468889999999999976544 3455544 6899999999996 466666 3567999999999999
Q ss_pred ccchhhhccCccCCCCcccCCCccccccceecccccc----cccccCCCCccCCCccEEeecccCCCCCCCCCC--cCCc
Q 007656 478 SSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLP----ALKSIYWKPLPFTHLKEISVGYCRNLKKLPLDS--NSAK 551 (594)
Q Consensus 478 ~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~----~L~~l~~~~~~l~~L~~L~i~~C~~L~~lp~~~--~~~~ 551 (594)
.++.++... .......+.++.+++.++. .+..++.....+++|+.|++++| +++.+|... ..++
T Consensus 233 -~l~~~~~~~--------l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~ 302 (353)
T 2z80_A 233 -DLDTFHFSE--------LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTS 302 (353)
T ss_dssp -BCTTCCCC--------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred -ccccccccc--------cccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCC
Confidence 444432200 0122335556666666542 22234444456899999999997 688999865 3489
Q ss_pred CcceEEEcc
Q 007656 552 ERKFVIRGE 560 (594)
Q Consensus 552 L~~l~I~~~ 560 (594)
|+.++++++
T Consensus 303 L~~L~L~~N 311 (353)
T 2z80_A 303 LQKIWLHTN 311 (353)
T ss_dssp CCEEECCSS
T ss_pred CCEEEeeCC
Confidence 999999865
No 52
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=6.8e-21 Score=190.11 Aligned_cols=245 Identities=14% Similarity=0.095 Sum_probs=129.6
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLK 297 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~ 297 (594)
.+++|++|++ .++.+..+++..|..+++|++|++++| .+ ..+++ +..+. +|++|++++|.++.+| .+++|+
T Consensus 32 ~~~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l-~~~~~-~~~l~-~L~~L~Ls~n~l~~l~----~~~~L~ 102 (317)
T 3o53_A 32 SAWNVKELDL-SGNPLSQISAADLAPFTKLELLNLSSN-VL-YETLD-LESLS-TLRTLDLNNNYVQELL----VGPSIE 102 (317)
T ss_dssp TGGGCSEEEC-TTSCCCCCCHHHHTTCTTCCEEECTTS-CC-EEEEE-ETTCT-TCCEEECCSSEEEEEE----ECTTCC
T ss_pred cCCCCCEEEC-cCCccCcCCHHHhhCCCcCCEEECCCC-cC-Ccchh-hhhcC-CCCEEECcCCcccccc----CCCCcC
Confidence 3456666666 555566666555666666666666666 66 44443 56666 6666666666666555 236666
Q ss_pred EEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHh
Q 007656 298 CLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILL 377 (594)
Q Consensus 298 ~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 377 (594)
+|++++| .+..++.. .+++|++|++++|.+... .+..+..+++|+.|+++.|.
T Consensus 103 ~L~l~~n-~l~~~~~~---~~~~L~~L~l~~N~l~~~---------------~~~~~~~l~~L~~L~Ls~N~-------- 155 (317)
T 3o53_A 103 TLHAANN-NISRVSCS---RGQGKKNIYLANNKITML---------------RDLDEGCRSRVQYLDLKLNE-------- 155 (317)
T ss_dssp EEECCSS-CCSEEEEC---CCSSCEEEECCSSCCCSG---------------GGBCTGGGSSEEEEECTTSC--------
T ss_pred EEECCCC-ccCCcCcc---ccCCCCEEECCCCCCCCc---------------cchhhhccCCCCEEECCCCC--------
Confidence 6666666 55555542 356666666666665541 11124445555555554443
Q ss_pred cCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCC
Q 007656 378 SSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKL 457 (594)
Q Consensus 378 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l 457 (594)
+.. .........+++|+.|++++|.... + +.. ..+++|+.|++++| .+
T Consensus 156 ------------------l~~-~~~~~~~~~l~~L~~L~L~~N~l~~-~-~~~----------~~l~~L~~L~Ls~N-~l 203 (317)
T 3o53_A 156 ------------------IDT-VNFAELAASSDTLEHLNLQYNFIYD-V-KGQ----------VVFAKLKTLDLSSN-KL 203 (317)
T ss_dssp ------------------CCE-EEGGGGGGGTTTCCEEECTTSCCCE-E-ECC----------CCCTTCCEEECCSS-CC
T ss_pred ------------------CCc-ccHHHHhhccCcCCEEECCCCcCcc-c-ccc----------cccccCCEEECCCC-cC
Confidence 332 2111122345566666666654332 1 111 13556666666663 34
Q ss_pred cccc-ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccc-cccCCCCccCCCccEEeec
Q 007656 458 KDVT-FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPAL-KSIYWKPLPFTHLKEISVG 535 (594)
Q Consensus 458 ~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L-~~l~~~~~~l~~L~~L~i~ 535 (594)
+.+| .+..+++|++|++++| .++.++. .+..+++|+.|++++++-. ..++.....+++|+.+++.
T Consensus 204 ~~l~~~~~~l~~L~~L~L~~N-~l~~l~~------------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 204 AFMGPEFQSAAGVTWISLRNN-KLVLIEK------------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CEECGGGGGGTTCSEEECTTS-CCCEECT------------TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CcchhhhcccCcccEEECcCC-cccchhh------------HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 4443 4555666666666666 3444332 3455566666666665322 1232233345566666666
Q ss_pred ccCCCCCC
Q 007656 536 YCRNLKKL 543 (594)
Q Consensus 536 ~C~~L~~l 543 (594)
+|+.++..
T Consensus 271 ~~~~l~~~ 278 (317)
T 3o53_A 271 TVKKLTGQ 278 (317)
T ss_dssp HHHHHHSS
T ss_pred CchhccCC
Confidence 55555543
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=1.8e-19 Score=188.47 Aligned_cols=240 Identities=20% Similarity=0.220 Sum_probs=149.4
Q ss_pred cccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccch-hhhccCcCcEEecCCCCCCCCcchhhhcCCCCCcEE
Q 007656 246 SLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPE-ELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLRVL 324 (594)
Q Consensus 246 ~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~~L 324 (594)
..+.++.++. .+ ..+|..+. . ++++|++++|.++.++. .+.++++|++|+|++| .+..++.+.+.++++|++|
T Consensus 44 ~~~~v~c~~~-~l-~~iP~~~~--~-~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L 117 (440)
T 3zyj_A 44 QFSKVICVRK-NL-REVPDGIS--T-NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTL 117 (440)
T ss_dssp TSCEEECCSC-CC-SSCCSCCC--T-TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEE
T ss_pred CCCEEEeCCC-Cc-CcCCCCCC--C-CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEE
Confidence 3567888888 89 89998764 4 99999999999998874 8999999999999999 7888887779999999999
Q ss_pred EecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcCchhhhcceeEEEEeCCCcccccccc
Q 007656 325 RMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLHLTGDTASIIDAT 404 (594)
Q Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 404 (594)
++++|.+... ....+..+++|+.|+++.|.+..+. ..
T Consensus 118 ~L~~n~l~~~---------------~~~~~~~l~~L~~L~L~~N~i~~~~----------------------------~~ 154 (440)
T 3zyj_A 118 ELFDNRLTTI---------------PNGAFVYLSKLKELWLRNNPIESIP----------------------------SY 154 (440)
T ss_dssp ECCSSCCSSC---------------CTTTSCSCSSCCEEECCSCCCCEEC----------------------------TT
T ss_pred ECCCCcCCee---------------CHhHhhccccCceeeCCCCcccccC----------------------------HH
Confidence 9999988752 2234778888998888866543221 11
Q ss_pred cccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCccccccccCCCCceEeEccCccchhhh
Q 007656 405 VFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDVTFLIFAPNLKSLDLSYCSSMEEVI 484 (594)
Q Consensus 405 ~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~~~ 484 (594)
.+..+++|+.|++++|+.+..++...+. .+++|+.|++++| .++.+|.+..+++|++|+|++| .++.++
T Consensus 155 ~~~~l~~L~~L~l~~~~~l~~i~~~~~~---------~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~ 223 (440)
T 3zyj_A 155 AFNRIPSLRRLDLGELKRLSYISEGAFE---------GLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGN-HLSAIR 223 (440)
T ss_dssp TTTTCTTCCEEECCCCTTCCEECTTTTT---------TCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTS-CCCEEC
T ss_pred HhhhCcccCEeCCCCCCCcceeCcchhh---------cccccCeecCCCC-cCccccccCCCcccCEEECCCC-ccCccC
Confidence 3444455555555555444443333322 4555555555553 4445555555555555555555 333332
Q ss_pred ccCccCCCCcccCCCccccccceecccccccccccCCC-CccCCCccEEeecccCCCCCCCCCCcC--CcCcceEEE
Q 007656 485 SVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWK-PLPFTHLKEISVGYCRNLKKLPLDSNS--AKERKFVIR 558 (594)
Q Consensus 485 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~-~~~l~~L~~L~i~~C~~L~~lp~~~~~--~~L~~l~I~ 558 (594)
. ..+..+++|+.|+|+++ .+..++.. ...+++|+.|+++++ +++.+|..... ++|+.++++
T Consensus 224 ~-----------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~ 287 (440)
T 3zyj_A 224 P-----------GSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLH 287 (440)
T ss_dssp T-----------TTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECC
T ss_pred h-----------hhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcC
Confidence 1 13444555555555554 34443332 223555555555553 44454443221 445555544
No 54
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=1.1e-20 Score=197.74 Aligned_cols=203 Identities=20% Similarity=0.171 Sum_probs=130.8
Q ss_pred CCCCcccccccccccccccCchhhcCCCcc-------------cEEEccCCcCcccccCchHHhhhhcCcEEEccCCccc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSL-------------KVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASIT 284 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L-------------~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~ 284 (594)
++++|++|++++|...+.+|.. ++++.+| ++|++++| .+ ..+|.. .. +|++|++++|.++
T Consensus 32 ~L~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l-~~lp~~---~~-~L~~L~l~~n~l~ 104 (454)
T 1jl5_A 32 NVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCLDRQAHELELNNL-GL-SSLPEL---PP-HLESLVASCNSLT 104 (454)
T ss_dssp --CCHHHHHHHHHHHHHTSCTT-SCCCHHHHHHHHHHHHHHTCSEEECTTS-CC-SCCCSC---CT-TCSEEECCSSCCS
T ss_pred cccchhhhhccCCcccccCCcc-cccchhcchhhhhhhhccCCCEEEecCC-cc-ccCCCC---cC-CCCEEEccCCcCC
Confidence 6677777777433333355554 5555553 67777777 66 666552 23 7777777777777
Q ss_pred ccchhhhccCcCcEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEE
Q 007656 285 ELPEELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLE 364 (594)
Q Consensus 285 ~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 364 (594)
.+|.. +.+|++|++++| .+..+|. + .++|++|++++|.+.. .+ .++++++|+.|+
T Consensus 105 ~lp~~---~~~L~~L~l~~n-~l~~l~~--~--~~~L~~L~L~~n~l~~----------------lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 105 ELPEL---PQSLKSLLVDNN-NLKALSD--L--PPLLEYLGVSNNQLEK----------------LP-ELQNSSFLKIID 159 (454)
T ss_dssp SCCCC---CTTCCEEECCSS-CCSCCCS--C--CTTCCEEECCSSCCSS----------------CC-CCTTCTTCCEEE
T ss_pred ccccc---cCCCcEEECCCC-ccCcccC--C--CCCCCEEECcCCCCCC----------------Cc-ccCCCCCCCEEE
Confidence 76642 356777777776 5565554 1 1567777777776653 22 478889999999
Q ss_pred EEEcchhhHHHHhcCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCC
Q 007656 365 LTLGSYHALQILLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFR 444 (594)
Q Consensus 365 l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~ 444 (594)
++.|....++.. ..+|+.|+++.+.+.. ++ .+..+++|+.|++++|.... + +. .++
T Consensus 160 l~~N~l~~lp~~------~~~L~~L~L~~n~l~~-l~---~~~~l~~L~~L~l~~N~l~~-l-~~------------~~~ 215 (454)
T 1jl5_A 160 VDNNSLKKLPDL------PPSLEFIAAGNNQLEE-LP---ELQNLPFLTAIYADNNSLKK-L-PD------------LPL 215 (454)
T ss_dssp CCSSCCSCCCCC------CTTCCEEECCSSCCSS-CC---CCTTCTTCCEEECCSSCCSS-C-CC------------CCT
T ss_pred CCCCcCcccCCC------cccccEEECcCCcCCc-Cc---cccCCCCCCEEECCCCcCCc-C-CC------------CcC
Confidence 988876553322 2388899886666665 42 47888899999998875443 1 21 235
Q ss_pred CcceEeEecCCCCccccccccCCCCceEeEccC
Q 007656 445 SLHCVRIEQCHKLKDVTFLIFAPNLKSLDLSYC 477 (594)
Q Consensus 445 ~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~ 477 (594)
+|+.|++++| .+..+|.++.+++|++|++++|
T Consensus 216 ~L~~L~l~~n-~l~~lp~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 216 SLESIVAGNN-ILEELPELQNLPFLTTIYADNN 247 (454)
T ss_dssp TCCEEECCSS-CCSSCCCCTTCTTCCEEECCSS
T ss_pred cccEEECcCC-cCCcccccCCCCCCCEEECCCC
Confidence 7777777775 4556666777777777777777
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=5.7e-20 Score=192.98 Aligned_cols=223 Identities=19% Similarity=0.218 Sum_probs=168.7
Q ss_pred CCcccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccccch-hhhccCcCc
Q 007656 220 PHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITELPE-ELKLLVNLK 297 (594)
Q Consensus 220 ~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L~ 297 (594)
++++.|+| .++.+..++...|.++++|++|+|++| .+ ..+ |..+..+. +|++|++++|.++.+|. .+..+++|+
T Consensus 75 ~~l~~L~L-~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i-~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLNL-MENNIQMIQADTFRHLHHLEVLQLGRN-SI-RQIEVGAFNGLA-SLNTLELFDNWLTVIPSGAFEYLSKLR 150 (452)
T ss_dssp TTCSEEEC-CSSCCCEECTTTTTTCTTCCEEECCSS-CC-CEECTTTTTTCT-TCCEEECCSSCCSBCCTTTSSSCTTCC
T ss_pred CCccEEEC-cCCcCceECHHHcCCCCCCCEEECCCC-cc-CCcChhhccCcc-cCCEEECCCCcCCccChhhhcccCCCC
Confidence 58999999 777888888777999999999999999 99 666 57888999 99999999999999987 488999999
Q ss_pred EEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHh
Q 007656 298 CLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILL 377 (594)
Q Consensus 298 ~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 377 (594)
+|++++| .+..+|...+.++++|++|++++|..... .....+.++++|+.|+++.|....++.
T Consensus 151 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~--------------i~~~~~~~l~~L~~L~L~~n~l~~~~~-- 213 (452)
T 3zyi_A 151 ELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEY--------------ISEGAFEGLFNLKYLNLGMCNIKDMPN-- 213 (452)
T ss_dssp EEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCE--------------ECTTTTTTCTTCCEEECTTSCCSSCCC--
T ss_pred EEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccc--------------cChhhccCCCCCCEEECCCCccccccc--
Confidence 9999999 78999987799999999999998655431 122347788999999988776655432
Q ss_pred cCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCC
Q 007656 378 SSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKL 457 (594)
Q Consensus 378 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l 457 (594)
...+.+|+.|+|+.+.+.. + ....+..+++|+.|++++|.... +.+..+. .+++|+.|+|++| .+
T Consensus 214 --~~~l~~L~~L~Ls~N~l~~-~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~---------~l~~L~~L~L~~N-~l 278 (452)
T 3zyi_A 214 --LTPLVGLEELEMSGNHFPE-I-RPGSFHGLSSLKKLWVMNSQVSL-IERNAFD---------GLASLVELNLAHN-NL 278 (452)
T ss_dssp --CTTCTTCCEEECTTSCCSE-E-CGGGGTTCTTCCEEECTTSCCCE-ECTTTTT---------TCTTCCEEECCSS-CC
T ss_pred --ccccccccEEECcCCcCcc-c-CcccccCccCCCEEEeCCCcCce-ECHHHhc---------CCCCCCEEECCCC-cC
Confidence 2234477777775555554 3 23456777777777777754433 3344433 5677777777774 55
Q ss_pred cccc--ccccCCCCceEeEccCc
Q 007656 458 KDVT--FLIFAPNLKSLDLSYCS 478 (594)
Q Consensus 458 ~~l~--~l~~l~~L~~L~L~~~~ 478 (594)
+.++ .+..+++|+.|+|++|+
T Consensus 279 ~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 279 SSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp SCCCTTSSTTCTTCCEEECCSSC
T ss_pred CccChHHhccccCCCEEEccCCC
Confidence 5655 36677777777777765
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=7.5e-20 Score=182.55 Aligned_cols=267 Identities=13% Similarity=0.041 Sum_probs=192.7
Q ss_pred CcccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccccchhhhccCcCcEE
Q 007656 221 HLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITELPEELKLLVNLKCL 299 (594)
Q Consensus 221 ~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L 299 (594)
+++.+++ ..+.+...+...+..+++|++|++++| .+ ..+ |..+..+. +|++|++++|.++.++. +..+++|++|
T Consensus 11 ~l~i~~l-s~~~l~~~~~~~~~~~~~L~~L~L~~n-~l-~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~-~~~l~~L~~L 85 (317)
T 3o53_A 11 RYKIEKV-TDSSLKQALASLRQSAWNVKELDLSGN-PL-SQISAADLAPFT-KLELLNLSSNVLYETLD-LESLSTLRTL 85 (317)
T ss_dssp EEEEESC-CTTTHHHHHHHHHTTGGGCSEEECTTS-CC-CCCCHHHHTTCT-TCCEEECTTSCCEEEEE-ETTCTTCCEE
T ss_pred ceeEeec-cccchhhhHHHHhccCCCCCEEECcCC-cc-CcCCHHHhhCCC-cCCEEECCCCcCCcchh-hhhcCCCCEE
Confidence 4555566 555566666666777788888888888 88 555 46788888 88888888888877664 8888888888
Q ss_pred ecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcC
Q 007656 300 NLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSS 379 (594)
Q Consensus 300 ~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 379 (594)
++++| .++.+|. .++|++|++++|.+.... ...+++|
T Consensus 86 ~Ls~n-~l~~l~~-----~~~L~~L~l~~n~l~~~~------------------~~~~~~L------------------- 122 (317)
T 3o53_A 86 DLNNN-YVQELLV-----GPSIETLHAANNNISRVS------------------CSRGQGK------------------- 122 (317)
T ss_dssp ECCSS-EEEEEEE-----CTTCCEEECCSSCCSEEE------------------ECCCSSC-------------------
T ss_pred ECcCC-ccccccC-----CCCcCEEECCCCccCCcC------------------ccccCCC-------------------
Confidence 88888 5666553 378888888888776411 1123444
Q ss_pred chhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCcc
Q 007656 380 NKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKD 459 (594)
Q Consensus 380 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~ 459 (594)
+.|+++.+.+.. + ....+..+++|+.|++++|.... +.+..+. ..+++|+.|++++| .++.
T Consensus 123 -------~~L~l~~N~l~~-~-~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~--------~~l~~L~~L~L~~N-~l~~ 183 (317)
T 3o53_A 123 -------KNIYLANNKITM-L-RDLDEGCRSRVQYLDLKLNEIDT-VNFAELA--------ASSDTLEHLNLQYN-FIYD 183 (317)
T ss_dssp -------EEEECCSSCCCS-G-GGBCTGGGSSEEEEECTTSCCCE-EEGGGGG--------GGTTTCCEEECTTS-CCCE
T ss_pred -------CEEECCCCCCCC-c-cchhhhccCCCCEEECCCCCCCc-ccHHHHh--------hccCcCCEEECCCC-cCcc
Confidence 444443334443 2 22366778999999999976554 3444432 25899999999995 6788
Q ss_pred ccccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCCCCccCCCccEEeecccCC
Q 007656 460 VTFLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKPLPFTHLKEISVGYCRN 539 (594)
Q Consensus 460 l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~l~~L~~L~i~~C~~ 539 (594)
++....+++|++|+|++| .++.++. .+..+++|+.|+++++ .++.++.....+++|+.|++++++-
T Consensus 184 ~~~~~~l~~L~~L~Ls~N-~l~~l~~------------~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 184 VKGQVVFAKLKTLDLSSN-KLAFMGP------------EFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp EECCCCCTTCCEEECCSS-CCCEECG------------GGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCC
T ss_pred cccccccccCCEEECCCC-cCCcchh------------hhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCc
Confidence 887778999999999999 5666644 5778999999999998 7889988877899999999999864
Q ss_pred C-CCCCCCCcC-CcCcceEEEccHhhhhhcc
Q 007656 540 L-KKLPLDSNS-AKERKFVIRGEEDWWNRLQ 568 (594)
Q Consensus 540 L-~~lp~~~~~-~~L~~l~I~~~~~~~~~l~ 568 (594)
. ..+|..... ++|+.+.+.++..+.....
T Consensus 250 ~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 250 HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp BHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred cCcCHHHHHhccccceEEECCCchhccCCch
Confidence 4 233332222 6778888887777765543
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=2.7e-19 Score=193.02 Aligned_cols=235 Identities=19% Similarity=0.160 Sum_probs=184.2
Q ss_pred CCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCcEE
Q 007656 220 PHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLKCL 299 (594)
Q Consensus 220 ~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L 299 (594)
++|+.|++ +++.++.+|. .+++|++|+|++| .+ +.+|. .+. +|++|++++|.++.+|. .+++|+.|
T Consensus 61 ~~L~~L~L-~~N~l~~lp~----~l~~L~~L~Ls~N-~l-~~lp~---~l~-~L~~L~Ls~N~l~~l~~---~l~~L~~L 126 (622)
T 3g06_A 61 AHITTLVI-PDNNLTSLPA----LPPELRTLEVSGN-QL-TSLPV---LPP-GLLELSIFSNPLTHLPA---LPSGLCKL 126 (622)
T ss_dssp TTCSEEEE-CSCCCSCCCC----CCTTCCEEEECSC-CC-SCCCC---CCT-TCCEEEECSCCCCCCCC---CCTTCCEE
T ss_pred CCCcEEEe-cCCCCCCCCC----cCCCCCEEEcCCC-cC-CcCCC---CCC-CCCEEECcCCcCCCCCC---CCCCcCEE
Confidence 68999999 7778888887 5789999999999 99 88987 567 99999999999999996 67899999
Q ss_pred ecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcC
Q 007656 300 NLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSS 379 (594)
Q Consensus 300 ~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 379 (594)
++++| .++.+|.. +++|++|++++|.+... + ..+++|+.|+++.|.+..++
T Consensus 127 ~L~~N-~l~~lp~~----l~~L~~L~Ls~N~l~~l----------------~---~~~~~L~~L~L~~N~l~~l~----- 177 (622)
T 3g06_A 127 WIFGN-QLTSLPVL----PPGLQELSVSDNQLASL----------------P---ALPSELCKLWAYNNQLTSLP----- 177 (622)
T ss_dssp ECCSS-CCSCCCCC----CTTCCEEECCSSCCSCC----------------C---CCCTTCCEEECCSSCCSCCC-----
T ss_pred ECCCC-CCCcCCCC----CCCCCEEECcCCcCCCc----------------C---CccCCCCEEECCCCCCCCCc-----
Confidence 99999 78999873 48999999999987651 1 13467888888887766544
Q ss_pred chhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCcc
Q 007656 380 NKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKD 459 (594)
Q Consensus 380 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~ 459 (594)
..+++|+.|+++.+.+.. ++. .+++|+.|++++|.... + + ..+++|+.|++++| .++.
T Consensus 178 -~~~~~L~~L~Ls~N~l~~-l~~-----~~~~L~~L~L~~N~l~~-l-~------------~~~~~L~~L~Ls~N-~L~~ 235 (622)
T 3g06_A 178 -MLPSGLQELSVSDNQLAS-LPT-----LPSELYKLWAYNNRLTS-L-P------------ALPSGLKELIVSGN-RLTS 235 (622)
T ss_dssp -CCCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSS-C-C------------CCCTTCCEEECCSS-CCSC
T ss_pred -ccCCCCcEEECCCCCCCC-CCC-----ccchhhEEECcCCcccc-c-C------------CCCCCCCEEEccCC-ccCc
Confidence 224588999986666665 422 24789999998875443 2 2 13578999999985 6777
Q ss_pred ccccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCCCCccCCCccEEeecccC
Q 007656 460 VTFLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKPLPFTHLKEISVGYCR 538 (594)
Q Consensus 460 l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~l~~L~~L~i~~C~ 538 (594)
+| ..+++|+.|+|++| .++.++ . .+++|+.|+|++| .++.+|.....+++|+.|++++|+
T Consensus 236 lp--~~l~~L~~L~Ls~N-~L~~lp-------------~--~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 236 LP--VLPSELKELMVSGN-RLTSLP-------------M--LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CC--CCCTTCCEEECCSS-CCSCCC-------------C--CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred CC--CCCCcCcEEECCCC-CCCcCC-------------c--ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 77 56788999999988 555542 1 5688999999988 688888777788999999998876
No 58
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=4.5e-19 Score=185.49 Aligned_cols=160 Identities=26% Similarity=0.246 Sum_probs=108.0
Q ss_pred CCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCcEE
Q 007656 220 PHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLKCL 299 (594)
Q Consensus 220 ~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L 299 (594)
++|++|++ +++.++.+|. |+++++|++|++++| .+ ..+|.. .. +|++|++++|.++.+| .++++++|++|
T Consensus 131 ~~L~~L~L-~~n~l~~lp~--~~~l~~L~~L~l~~N-~l-~~lp~~---~~-~L~~L~L~~n~l~~l~-~~~~l~~L~~L 200 (454)
T 1jl5_A 131 PLLEYLGV-SNNQLEKLPE--LQNSSFLKIIDVDNN-SL-KKLPDL---PP-SLEFIAAGNNQLEELP-ELQNLPFLTAI 200 (454)
T ss_dssp TTCCEEEC-CSSCCSSCCC--CTTCTTCCEEECCSS-CC-SCCCCC---CT-TCCEEECCSSCCSSCC-CCTTCTTCCEE
T ss_pred CCCCEEEC-cCCCCCCCcc--cCCCCCCCEEECCCC-cC-cccCCC---cc-cccEEECcCCcCCcCc-cccCCCCCCEE
Confidence 57777777 5566767773 777788888888887 77 666653 24 7778888887777777 57777778888
Q ss_pred ecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcC
Q 007656 300 NLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSS 379 (594)
Q Consensus 300 ~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 379 (594)
++++| .+..+|.. .++|++|++++|.+.. .+ .+..+++|+.|+++.|....++..
T Consensus 201 ~l~~N-~l~~l~~~----~~~L~~L~l~~n~l~~----------------lp-~~~~l~~L~~L~l~~N~l~~l~~~--- 255 (454)
T 1jl5_A 201 YADNN-SLKKLPDL----PLSLESIVAGNNILEE----------------LP-ELQNLPFLTTIYADNNLLKTLPDL--- 255 (454)
T ss_dssp ECCSS-CCSSCCCC----CTTCCEEECCSSCCSS----------------CC-CCTTCTTCCEEECCSSCCSSCCSC---
T ss_pred ECCCC-cCCcCCCC----cCcccEEECcCCcCCc----------------cc-ccCCCCCCCEEECCCCcCCccccc---
Confidence 88777 56666652 2477777777776653 22 267788888888887766543321
Q ss_pred chhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCc
Q 007656 380 NKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIEL 423 (594)
Q Consensus 380 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 423 (594)
..+|+.|+++.+.+.. ++. .+++|+.|++++|...
T Consensus 256 ---~~~L~~L~l~~N~l~~-l~~-----~~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 256 ---PPSLEALNVRDNYLTD-LPE-----LPQSLTFLDVSENIFS 290 (454)
T ss_dssp ---CTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCS
T ss_pred ---ccccCEEECCCCcccc-cCc-----ccCcCCEEECcCCccC
Confidence 2478888885555554 322 2367788888776543
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=2.2e-19 Score=189.72 Aligned_cols=239 Identities=14% Similarity=0.084 Sum_probs=149.8
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLK 297 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~ 297 (594)
.+++|++|+| +++.+..+++..|..+++|++|+|++| .+ ..+++ ++.+. +|++|++++|.++.+|. .++|+
T Consensus 32 ~~~~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l-~~~~~-l~~l~-~L~~L~Ls~N~l~~l~~----~~~L~ 102 (487)
T 3oja_A 32 SAWNVKELDL-SGNPLSQISAADLAPFTKLELLNLSSN-VL-YETLD-LESLS-TLRTLDLNNNYVQELLV----GPSIE 102 (487)
T ss_dssp TGGGCCEEEC-CSSCCCCCCGGGGTTCTTCCEEECTTS-CC-EEEEE-CTTCT-TCCEEECCSSEEEEEEE----CTTCC
T ss_pred cCCCccEEEe-eCCcCCCCCHHHHhCCCCCCEEEeeCC-CC-CCCcc-cccCC-CCCEEEecCCcCCCCCC----CCCcC
Confidence 3457777777 555666666655777777777777777 66 44443 66676 77777777777776653 26777
Q ss_pred EEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHh
Q 007656 298 CLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILL 377 (594)
Q Consensus 298 ~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 377 (594)
+|++++| .+..++.. .+++|+.|++++|.+... .+..++++++|+.|+++
T Consensus 103 ~L~L~~N-~l~~~~~~---~l~~L~~L~L~~N~l~~~---------------~~~~~~~l~~L~~L~Ls----------- 152 (487)
T 3oja_A 103 TLHAANN-NISRVSCS---RGQGKKNIYLANNKITML---------------RDLDEGCRSRVQYLDLK----------- 152 (487)
T ss_dssp EEECCSS-CCCCEEEC---CCSSCEEEECCSSCCCSG---------------GGBCGGGGSSEEEEECT-----------
T ss_pred EEECcCC-cCCCCCcc---ccCCCCEEECCCCCCCCC---------------CchhhcCCCCCCEEECC-----------
Confidence 7777777 56666542 456777777777766541 12224444444444443
Q ss_pred cCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCC
Q 007656 378 SSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKL 457 (594)
Q Consensus 378 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l 457 (594)
.+.+.. .........+++|+.|++++|.... + +.. ..+++|+.|+|++| .+
T Consensus 153 ---------------~N~l~~-~~~~~l~~~l~~L~~L~Ls~N~l~~-~-~~~----------~~l~~L~~L~Ls~N-~l 203 (487)
T 3oja_A 153 ---------------LNEIDT-VNFAELAASSDTLEHLNLQYNFIYD-V-KGQ----------VVFAKLKTLDLSSN-KL 203 (487)
T ss_dssp ---------------TSCCCE-EEGGGGGGGTTTCCEEECTTSCCCE-E-ECC----------CCCTTCCEEECCSS-CC
T ss_pred ---------------CCCCCC-cChHHHhhhCCcccEEecCCCcccc-c-ccc----------ccCCCCCEEECCCC-CC
Confidence 333333 2111122367888888888876544 2 222 24788888888885 45
Q ss_pred cccc-ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccc-cccCCCCccCCCccEEeec
Q 007656 458 KDVT-FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPAL-KSIYWKPLPFTHLKEISVG 535 (594)
Q Consensus 458 ~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L-~~l~~~~~~l~~L~~L~i~ 535 (594)
+.+| .+..+++|+.|+|++| .+..++. .+..+++|+.|++++++-. ..++.....++.|+.+.+.
T Consensus 204 ~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~------------~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 204 AFMGPEFQSAAGVTWISLRNN-KLVLIEK------------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CEECGGGGGGTTCSEEECTTS-CCCEECT------------TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCHhHcCCCCccEEEecCC-cCcccch------------hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 5554 5788888888888888 4555543 5677888888888887533 1333334456777777765
Q ss_pred cc
Q 007656 536 YC 537 (594)
Q Consensus 536 ~C 537 (594)
.+
T Consensus 271 ~~ 272 (487)
T 3oja_A 271 TV 272 (487)
T ss_dssp HH
T ss_pred cc
Confidence 33
No 60
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=8.9e-20 Score=200.14 Aligned_cols=109 Identities=28% Similarity=0.348 Sum_probs=80.4
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCc-hHHhhhhcCcEEEccCCcccccch-hhhccCc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPL-AMSELGSSLELLDISYASITELPE-ELKLLVN 295 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~-~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~ 295 (594)
++++|++|+| +++.++.+++++|.++++|++|+|++| .+ ..+|. .|..+. +|++|++++|.++.+|. .++++++
T Consensus 74 ~l~~L~~L~L-s~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l-~~l~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~~~~L~~ 149 (635)
T 4g8a_A 74 SFPELQVLDL-SRCEIQTIEDGAYQSLSHLSTLILTGN-PI-QSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKT 149 (635)
T ss_dssp TCTTCCEEEC-TTCCCCEECTTTTTTCTTCCEEECTTC-CC-CEECGGGGTTCT-TCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred CCCCCCEEEC-CCCcCCCcChhHhcCCCCCCEEEccCC-cC-CCCCHHHhcCCC-CCCEEECCCCcCCCCChhhhhcCcc
Confidence 7788888888 666777777777788888888888888 77 66654 467777 88888888888877776 4777888
Q ss_pred CcEEecCCCCCCCCc--chhhhcCCCCCcEEEecCCCCC
Q 007656 296 LKCLNLRWTDTLNKI--PRQLISILSWLRVLRMLGTGWF 332 (594)
Q Consensus 296 L~~L~L~~~~~l~~l--p~~~~~~L~~L~~L~l~~~~~~ 332 (594)
|++|++++| .+..+ |. .++.+++|++|++++|.+.
T Consensus 150 L~~L~Ls~N-~l~~~~~~~-~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 150 LKELNVAHN-LIQSFKLPE-YFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CCEEECCSS-CCCCCCCCG-GGGGCTTCCEEECCSSCCC
T ss_pred cCeeccccC-ccccCCCch-hhccchhhhhhcccCcccc
Confidence 888888877 55543 44 3677778888877777654
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=2.3e-19 Score=176.26 Aligned_cols=219 Identities=16% Similarity=0.144 Sum_probs=111.2
Q ss_pred cccccccccccccCchhhcCCCcccEEEccCCcCcccccC-chHHhhhhcCcEEEccCCccccc-chhhhccCcCcEEec
Q 007656 224 TLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLP-LAMSELGSSLELLDISYASITEL-PEELKLLVNLKCLNL 301 (594)
Q Consensus 224 ~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp-~~i~~l~~~L~~L~ls~~~l~~l-p~~i~~L~~L~~L~L 301 (594)
+++. .++.++.+|.. -.++|++|++++| .+ ..+| ..+..+. +|++|++++|.++.+ |..+..+++|++|++
T Consensus 15 ~~~c-~~~~l~~ip~~---~~~~l~~L~l~~n-~i-~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 15 TTSC-PQQGLQAVPVG---IPAASQRIFLHGN-RI-SHVPAASFRACR-NLTILWLHSNVLARIDAAAFTGLALLEQLDL 87 (285)
T ss_dssp EEEC-CSSCCSSCCTT---CCTTCSEEECTTS-CC-CEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred EEEc-CcCCcccCCcC---CCCCceEEEeeCC-cC-CccCHHHcccCC-CCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence 4444 44455555543 1345666666666 55 4443 3455555 666666666666655 335666666666666
Q ss_pred CCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcCch
Q 007656 302 RWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNK 381 (594)
Q Consensus 302 ~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~ 381 (594)
++|..+..++...+..+++|++|++++|.+... .+..+.++++|+.|+++.+....+..- ...
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~ 150 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL---------------GPGLFRGLAALQYLYLQDNALQALPDD--TFR 150 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCC---------------CTTTTTTCTTCCEEECCSSCCCCCCTT--TTT
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCCcCCEE---------------CHhHhhCCcCCCEEECCCCcccccCHh--Hhc
Confidence 666335555433356666666666666655431 122355555666655554433221100 001
Q ss_pred hhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCcccc
Q 007656 382 LKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDVT 461 (594)
Q Consensus 382 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~ 461 (594)
.+++|+.|+++.+.+.. + ....+..+++|+.|++++|.... +.+.++. .+++|+.|++++| .+..++
T Consensus 151 ~l~~L~~L~l~~n~l~~-~-~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~---------~l~~L~~L~l~~n-~l~~~~ 217 (285)
T 1ozn_A 151 DLGNLTHLFLHGNRISS-V-PERAFRGLHSLDRLLLHQNRVAH-VHPHAFR---------DLGRLMTLYLFAN-NLSALP 217 (285)
T ss_dssp TCTTCCEEECCSSCCCE-E-CTTTTTTCTTCCEEECCSSCCCE-ECTTTTT---------TCTTCCEEECCSS-CCSCCC
T ss_pred cCCCccEEECCCCcccc-c-CHHHhcCccccCEEECCCCcccc-cCHhHcc---------CcccccEeeCCCC-cCCcCC
Confidence 11233444442233332 2 11235556666666666654333 2333332 4666666666664 444444
Q ss_pred --ccccCCCCceEeEccCcc
Q 007656 462 --FLIFAPNLKSLDLSYCSS 479 (594)
Q Consensus 462 --~l~~l~~L~~L~L~~~~~ 479 (594)
.+..+++|++|+|++|+.
T Consensus 218 ~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 218 TEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp HHHHTTCTTCCEEECCSSCE
T ss_pred HHHcccCcccCEEeccCCCc
Confidence 256666666666666643
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=7e-19 Score=174.67 Aligned_cols=239 Identities=17% Similarity=0.197 Sum_probs=179.4
Q ss_pred cEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchh-hhccCcCcEEecCCCCCCCCc---chhhhcCCCCCcE
Q 007656 248 KVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEE-LKLLVNLKCLNLRWTDTLNKI---PRQLISILSWLRV 323 (594)
Q Consensus 248 ~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~l---p~~~~~~L~~L~~ 323 (594)
+.++.+++ .+ ..+|..+. . +|++|++++|.++.+|.. +.++++|++|++++| .+..+ |.. +..+++|++
T Consensus 10 ~~l~c~~~-~l-~~ip~~~~--~-~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~~~~~~L~~ 82 (306)
T 2z66_A 10 TEIRCNSK-GL-TSVPTGIP--S-SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQS-DFGTTSLKY 82 (306)
T ss_dssp TEEECCSS-CC-SSCCSCCC--T-TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHH-HHSCSCCCE
T ss_pred CEEEcCCC-Cc-ccCCCCCC--C-CCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccc-cccccccCE
Confidence 57888888 88 88988653 4 999999999999999974 799999999999999 67765 454 778999999
Q ss_pred EEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcCchhhhcceeEEEEeCCCccccccc
Q 007656 324 LRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLHLTGDTASIIDA 403 (594)
Q Consensus 324 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 403 (594)
|++++|.+.. .+..+..+++|+.|+++.+... . .+..
T Consensus 83 L~Ls~n~i~~----------------l~~~~~~l~~L~~L~l~~n~l~--------------------------~-~~~~ 119 (306)
T 2z66_A 83 LDLSFNGVIT----------------MSSNFLGLEQLEHLDFQHSNLK--------------------------Q-MSEF 119 (306)
T ss_dssp EECCSCSEEE----------------EEEEEETCTTCCEEECTTSEEE--------------------------S-STTT
T ss_pred EECCCCcccc----------------ChhhcCCCCCCCEEECCCCccc--------------------------c-cccc
Confidence 9999998764 3334677788887777644322 1 2122
Q ss_pred ccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCcc--cc-ccccCCCCceEeEccCccc
Q 007656 404 TVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKD--VT-FLIFAPNLKSLDLSYCSSM 480 (594)
Q Consensus 404 ~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~--l~-~l~~l~~L~~L~L~~~~~l 480 (594)
..+..+++|+.|++++|.... ..+..+. .+++|+.|++++| .+.. +| .+..+++|++|++++| .+
T Consensus 120 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~---------~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l 187 (306)
T 2z66_A 120 SVFLSLRNLIYLDISHTHTRV-AFNGIFN---------GLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QL 187 (306)
T ss_dssp TTTTTCTTCCEEECTTSCCEE-CSTTTTT---------TCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CC
T ss_pred hhhhhccCCCEEECCCCcCCc-cchhhcc---------cCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCC-Cc
Confidence 357788999999999976544 3344433 6899999999996 4443 44 6889999999999999 55
Q ss_pred hhhhccCccCCCCcccCCCccccccceecccccccccccCC-CCccCCCccEEeecccCCCCCCCCCCcC--CcCcceEE
Q 007656 481 EEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYW-KPLPFTHLKEISVGYCRNLKKLPLDSNS--AKERKFVI 557 (594)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~-~~~~l~~L~~L~i~~C~~L~~lp~~~~~--~~L~~l~I 557 (594)
+.++. ..+..+++|+.|+++++ .+..++. ....+++|+.|++++|.--...|..... ++|+.+++
T Consensus 188 ~~~~~-----------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L 255 (306)
T 2z66_A 188 EQLSP-----------TAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255 (306)
T ss_dssp CEECT-----------TTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEEC
T ss_pred CCcCH-----------HHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEc
Confidence 55432 36778999999999998 5777665 3346899999999998543334433332 48899988
Q ss_pred Ecc
Q 007656 558 RGE 560 (594)
Q Consensus 558 ~~~ 560 (594)
+++
T Consensus 256 ~~N 258 (306)
T 2z66_A 256 TQN 258 (306)
T ss_dssp TTC
T ss_pred cCC
Confidence 754
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=7.7e-20 Score=182.01 Aligned_cols=246 Identities=18% Similarity=0.178 Sum_probs=144.9
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcc-cccCchHH-------hhhhcCcEEEccCCccc-ccch
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFT-LKLPLAMS-------ELGSSLELLDISYASIT-ELPE 288 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~-~~lp~~i~-------~l~~~L~~L~ls~~~l~-~lp~ 288 (594)
..++|+.|++ .++.+ .+|..+... |++|++++| .+. ..+|..+. .+. +|++|++++|.++ .+|.
T Consensus 41 ~~~~L~~l~l-~~n~l-~~p~~~~~~---L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 41 GGRSLEYLLK-RVDTE-ADLGQFTDI---IKSLSLKRL-TVRAARIPSRILFGALRVLGIS-GLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEECTTHHH-HCCTT-CCCHHHHHH---HHHCCCCEE-EEEEEECBHHHHHHHHHHHTTS-CCCEEEEEEEBCBSCCCC
T ss_pred cCCCceeEee-ccccc-ccHHHHHHH---Hhhcccccc-cccCCCcCHHHHHHHHHhcCcC-CccEEEccCCcccchhHH
Confidence 4566777777 44455 666653322 777777777 661 23455554 566 7777777777776 5666
Q ss_pred hh--hccCcCcEEecCCCCCCCCcchhhhcCC-----CCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCc
Q 007656 289 EL--KLLVNLKCLNLRWTDTLNKIPRQLISIL-----SWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLE 361 (594)
Q Consensus 289 ~i--~~L~~L~~L~L~~~~~l~~lp~~~~~~L-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 361 (594)
.+ +.+++|++|++++| .+..+|.. ++.+ ++|++|++++|.+... .+..+.++++|+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~---------------~~~~~~~l~~L~ 176 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNV-SWATRDAW-LAELQQWLKPGLKVLSIAQAHSLNF---------------SCEQVRVFPALS 176 (312)
T ss_dssp CSSSCCSCCCSEEEEESC-BCSSSSSH-HHHHHTTCCTTCCEEEEESCSCCCC---------------CTTTCCCCSSCC
T ss_pred HHHHhcCCCccEEEccCC-CCcchhHH-HHHHHHhhcCCCcEEEeeCCCCccc---------------hHHHhccCCCCC
Confidence 54 77777777777777 56666643 5555 7777777777776541 223466777777
Q ss_pred EEEEEEcchhhHHHHhcCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCce--eeeecccccccccCC
Q 007656 362 VLELTLGSYHALQILLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELE--ELKIDYTEIVRKRRE 439 (594)
Q Consensus 362 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~l~~~~~~~~~~~~~ 439 (594)
.|+++.|.......+. ....+..+++|++|++++|.... .++...+
T Consensus 177 ~L~Ls~N~l~~~~~~~------------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-------- 224 (312)
T 1wwl_A 177 TLDLSDNPELGERGLI------------------------SALCPLKFPTLQVLALRNAGMETPSGVCSALA-------- 224 (312)
T ss_dssp EEECCSCTTCHHHHHH------------------------HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH--------
T ss_pred EEECCCCCcCcchHHH------------------------HHHHhccCCCCCEEECCCCcCcchHHHHHHHH--------
Confidence 7777766532211111 00123555677777777654432 1111111
Q ss_pred CccCCCcceEeEecCCCCcc-c--cccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccc
Q 007656 440 PFVFRSLHCVRIEQCHKLKD-V--TFLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPAL 516 (594)
Q Consensus 440 ~~~~~~L~~L~L~~c~~l~~-l--~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L 516 (594)
..+++|+.|++++| .+.. . +.+..+++|++|++++| .++.++. .+. ++|+.|+++++ .+
T Consensus 225 -~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~------------~~~--~~L~~L~Ls~N-~l 286 (312)
T 1wwl_A 225 -AARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPK------------GLP--AKLSVLDLSYN-RL 286 (312)
T ss_dssp -HTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCS------------SCC--SEEEEEECCSS-CC
T ss_pred -hcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCC-ccChhhh------------hcc--CCceEEECCCC-CC
Confidence 14567777777774 3433 2 23455677777777777 4444432 222 67777777776 56
Q ss_pred cccCCCCccCCCccEEeecccC
Q 007656 517 KSIYWKPLPFTHLKEISVGYCR 538 (594)
Q Consensus 517 ~~l~~~~~~l~~L~~L~i~~C~ 538 (594)
+.++. ...+++|+.|++++++
T Consensus 287 ~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 287 DRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CSCCC-TTTSCEEEEEECTTCT
T ss_pred CCChh-HhhCCCCCEEeccCCC
Confidence 66654 4567777777777643
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=1.8e-19 Score=179.38 Aligned_cols=135 Identities=19% Similarity=0.205 Sum_probs=107.1
Q ss_pred cccccccccccccc--cCchhhc-------CCCcccEEEccCCcCcccccCchH--HhhhhcCcEEEccCCcccccchhh
Q 007656 222 LHTLFLASNNSLQR--ITDGFFQ-------LMPSLKVLKMSNCWNFTLKLPLAM--SELGSSLELLDISYASITELPEEL 290 (594)
Q Consensus 222 L~~L~L~~~~~l~~--l~~~~~~-------~l~~L~~L~L~~~~~l~~~lp~~i--~~l~~~L~~L~ls~~~l~~lp~~i 290 (594)
|+.|++ .++.+.. ++.. +. ++++|++|++++| .+++.+|..+ ..+. +|++|++++|.++.+|..+
T Consensus 65 L~~L~L-~~n~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~ 140 (312)
T 1wwl_A 65 IKSLSL-KRLTVRAARIPSR-ILFGALRVLGISGLQELTLENL-EVTGTAPPPLLEATGP-DLNILNLRNVSWATRDAWL 140 (312)
T ss_dssp HHHCCC-CEEEEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCCSSSCCSC-CCSEEEEESCBCSSSSSHH
T ss_pred Hhhccc-ccccccCCCcCHH-HHHHHHHhcCcCCccEEEccCC-cccchhHHHHHHhcCC-CccEEEccCCCCcchhHHH
Confidence 889999 5566643 4444 33 6899999999999 8845778876 7888 9999999999999888888
Q ss_pred hcc-----CcCcEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHh--cCCCCCcEE
Q 007656 291 KLL-----VNLKCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQEL--LGLKYLEVL 363 (594)
Q Consensus 291 ~~L-----~~L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~L~~L~~L 363 (594)
+.+ ++|++|++++| .+..++...++++++|++|++++|.+.+ ....+..+ ..+++|+.|
T Consensus 141 ~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------~~~~~~~~~~~~l~~L~~L 206 (312)
T 1wwl_A 141 AELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELG-------------ERGLISALCPLKFPTLQVL 206 (312)
T ss_dssp HHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCH-------------HHHHHHHSCTTSCTTCCEE
T ss_pred HHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCc-------------chHHHHHHHhccCCCCCEE
Confidence 887 89999999999 7888886569999999999999998653 11123344 788899999
Q ss_pred EEEEcchhhHH
Q 007656 364 ELTLGSYHALQ 374 (594)
Q Consensus 364 ~l~~~~~~~~~ 374 (594)
+++.|.+..+.
T Consensus 207 ~L~~N~l~~~~ 217 (312)
T 1wwl_A 207 ALRNAGMETPS 217 (312)
T ss_dssp ECTTSCCCCHH
T ss_pred ECCCCcCcchH
Confidence 98877665433
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=2e-18 Score=169.49 Aligned_cols=219 Identities=17% Similarity=0.162 Sum_probs=148.0
Q ss_pred ccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccch-hhhccCcCcEEecCCCCCCCCcchhhhcCCCCCcEEE
Q 007656 247 LKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPE-ELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLRVLR 325 (594)
Q Consensus 247 L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~ 325 (594)
-+.++.+++ .+ ..+|..+ .. +|++|++++|.++.+|. .+.++++|++|++++| .+..++...+.++++|++|+
T Consensus 13 ~~~~~c~~~-~l-~~ip~~~--~~-~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 86 (285)
T 1ozn_A 13 KVTTSCPQQ-GL-QAVPVGI--PA-ASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLD 86 (285)
T ss_dssp SCEEECCSS-CC-SSCCTTC--CT-TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEE
T ss_pred CeEEEcCcC-Cc-ccCCcCC--CC-CceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEe
Confidence 367888888 89 8888754 34 99999999999999985 6999999999999999 78888555599999999999
Q ss_pred ecCCC-CCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcCchhhhcceeEEEEeCCCcccccccc
Q 007656 326 MLGTG-WFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLHLTGDTASIIDAT 404 (594)
Q Consensus 326 l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 404 (594)
+++|. +.. ..+..+..+++|+.|+++.+....+ ...
T Consensus 87 l~~n~~l~~---------------~~~~~~~~l~~L~~L~l~~n~l~~~----------------------------~~~ 123 (285)
T 1ozn_A 87 LSDNAQLRS---------------VDPATFHGLGRLHTLHLDRCGLQEL----------------------------GPG 123 (285)
T ss_dssp CCSCTTCCC---------------CCTTTTTTCTTCCEEECTTSCCCCC----------------------------CTT
T ss_pred CCCCCCccc---------------cCHHHhcCCcCCCEEECCCCcCCEE----------------------------CHh
Confidence 99997 543 1244578888898888875543221 112
Q ss_pred cccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCcccc--ccccCCCCceEeEccCccchh
Q 007656 405 VFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDVT--FLIFAPNLKSLDLSYCSSMEE 482 (594)
Q Consensus 405 ~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~ 482 (594)
.+..+++|+.|++++|.... +++..+. .+++|+.|++++| .++.++ .+..+++|++|++++|. +..
T Consensus 124 ~~~~l~~L~~L~l~~n~l~~-~~~~~~~---------~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~ 191 (285)
T 1ozn_A 124 LFRGLAALQYLYLQDNALQA-LPDDTFR---------DLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR-VAH 191 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCC-CCTTTTT---------TCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCE
T ss_pred HhhCCcCCCEEECCCCcccc-cCHhHhc---------cCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCc-ccc
Confidence 45556667777776654332 2333222 4666777777764 455554 26666777777777663 333
Q ss_pred hhccCccCCCCcccCCCccccccceecccccccccccCCC-CccCCCccEEeecccC
Q 007656 483 VISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWK-PLPFTHLKEISVGYCR 538 (594)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~-~~~l~~L~~L~i~~C~ 538 (594)
++. ..+..+++|+.|+++++ .+..++.. ...+++|+.|++++++
T Consensus 192 ~~~-----------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 192 VHP-----------HAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp ECT-----------TTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred cCH-----------hHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCC
Confidence 311 24556667777777766 45555432 3346677777776654
No 66
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=1.8e-18 Score=165.04 Aligned_cols=102 Identities=22% Similarity=0.344 Sum_probs=73.9
Q ss_pred ccccccccccccccCchhhcCCCcccEEEccCCcCcccccCc-hHHhhhhcCcEEEccCCc-ccccch-hhhccCcCcEE
Q 007656 223 HTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPL-AMSELGSSLELLDISYAS-ITELPE-ELKLLVNLKCL 299 (594)
Q Consensus 223 ~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~-~i~~l~~~L~~L~ls~~~-l~~lp~-~i~~L~~L~~L 299 (594)
+.+.+ .|..++.+|. +. ++|++|++++| .+ ..+|. .+..+. +|++|++++|. ++.+|. .+.++++|++|
T Consensus 14 ~~~~v-~c~~l~~ip~--~~--~~l~~L~l~~n-~l-~~i~~~~~~~l~-~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L 85 (239)
T 2xwt_C 14 EDFRV-TCKDIQRIPS--LP--PSTQTLKLIET-HL-RTIPSHAFSNLP-NISRIYVSIDVTLQQLESHSFYNLSKVTHI 85 (239)
T ss_dssp STTEE-EECSCSSCCC--CC--TTCCEEEEESC-CC-SEECTTTTTTCT-TCCEEEEECCSSCCEECTTTEESCTTCCEE
T ss_pred Cccee-EccCccccCC--CC--CcccEEEEeCC-cc-eEECHHHccCCC-CCcEEeCCCCCCcceeCHhHcCCCcCCcEE
Confidence 34444 4555777776 22 37888888888 78 66654 677777 88888888885 877776 67788888888
Q ss_pred ecCC-CCCCCCcchhhhcCCCCCcEEEecCCCCCc
Q 007656 300 NLRW-TDTLNKIPRQLISILSWLRVLRMLGTGWFN 333 (594)
Q Consensus 300 ~L~~-~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~ 333 (594)
++++ | .++.+|.+.+.++++|++|++++|.+..
T Consensus 86 ~l~~~n-~l~~i~~~~f~~l~~L~~L~l~~n~l~~ 119 (239)
T 2xwt_C 86 EIRNTR-NLTYIDPDALKELPLLKFLGIFNTGLKM 119 (239)
T ss_dssp EEEEET-TCCEECTTSEECCTTCCEEEEEEECCCS
T ss_pred ECCCCC-CeeEcCHHHhCCCCCCCEEeCCCCCCcc
Confidence 8887 5 6777776557788888888888776654
No 67
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=1.2e-18 Score=189.52 Aligned_cols=301 Identities=16% Similarity=0.124 Sum_probs=174.1
Q ss_pred CCCCcccccccccccccccCc----hhhcCCCcccEEEccCCcCcc----cccCchHHhhhhcCcEEEccCCcccccchh
Q 007656 218 TCPHLHTLFLASNNSLQRITD----GFFQLMPSLKVLKMSNCWNFT----LKLPLAMSELGSSLELLDISYASITELPEE 289 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~----~~~~~l~~L~~L~L~~~~~l~----~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~ 289 (594)
.|++|++|+++ ++.+..... .++..+++|++|++++| .++ ..++..+..++ +|++|++++|.+..+|..
T Consensus 162 ~~~~L~~L~L~-~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~l~~~ 238 (592)
T 3ogk_B 162 HCRKIKTLLME-ESSFSEKDGKWLHELAQHNTSLEVLNFYMT-EFAKISPKDLETIARNCR-SLVSVKVGDFEILELVGF 238 (592)
T ss_dssp HCTTCSEEECT-TCEEECCCSHHHHHHHHHCCCCCEEECTTC-CCSSCCHHHHHHHHHHCT-TCCEEECSSCBGGGGHHH
T ss_pred hCCCCCEEECc-cccccCcchhHHHHHHhcCCCccEEEeecc-CCCccCHHHHHHHHhhCC-CCcEEeccCccHHHHHHH
Confidence 57888888884 444433321 23567788888888887 662 13344455666 888888888887777777
Q ss_pred hhccCcCcEEecCCCC--------------------------CCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccc
Q 007656 290 LKLLVNLKCLNLRWTD--------------------------TLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVL 343 (594)
Q Consensus 290 i~~L~~L~~L~L~~~~--------------------------~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 343 (594)
+.++++|++|+++.+. ....+|. .+..+++|++|++++|.+..
T Consensus 239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~Ls~~~l~~---------- 307 (592)
T 3ogk_B 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI-LFPFAAQIRKLDLLYALLET---------- 307 (592)
T ss_dssp HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG-GGGGGGGCCEEEETTCCCCH----------
T ss_pred HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH-HHhhcCCCcEEecCCCcCCH----------
Confidence 7777777777776321 1233444 25667788888888877432
Q ss_pred cCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcCchhhhcceeEEEE-----------eCCCcccccccccccCccCC
Q 007656 344 FGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLH-----------LTGDTASIIDATVFADLNQL 412 (594)
Q Consensus 344 ~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~-----------~~~~~~~~~~~~~l~~~~~L 412 (594)
......+.++++|+.|++. +.... ..+......+++|+.|++. |+.... .........+++|
T Consensus 308 ----~~~~~~~~~~~~L~~L~L~-~~~~~-~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~-~~~~~l~~~~~~L 380 (592)
T 3ogk_B 308 ----EDHCTLIQKCPNLEVLETR-NVIGD-RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ-RGLIALAQGCQEL 380 (592)
T ss_dssp ----HHHHHHHTTCTTCCEEEEE-GGGHH-HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH-HHHHHHHHHCTTC
T ss_pred ----HHHHHHHHhCcCCCEEecc-CccCH-HHHHHHHHhCCCCCEEEeecCccccccccccCccCH-HHHHHHHhhCccC
Confidence 1233446788899988888 33211 2222222334578888884 555554 2122234557888
Q ss_pred ceEEecccCCceeeeecccccccccCCCccCCCcceEeEec---CCCCcccc-------ccccCCCCceEeEccCcc-ch
Q 007656 413 NQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQ---CHKLKDVT-------FLIFAPNLKSLDLSYCSS-ME 481 (594)
Q Consensus 413 ~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~---c~~l~~l~-------~l~~l~~L~~L~L~~~~~-l~ 481 (594)
++|+++. +.+....+..+. ..+++|+.|++++ |+.++..| .+..+++|++|+|++|.. +.
T Consensus 381 ~~L~l~~-~~l~~~~~~~l~--------~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~ 451 (592)
T 3ogk_B 381 EYMAVYV-SDITNESLESIG--------TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLT 451 (592)
T ss_dssp SEEEEEE-SCCCHHHHHHHH--------HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCC
T ss_pred eEEEeec-CCccHHHHHHHH--------hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCcc
Confidence 8888844 343322233332 2477788888873 45666532 245677888888876542 22
Q ss_pred hh-hccCccCCCCcccCCCccccccceecccccccccc--cCCCCccCCCccEEeecccCCCCC--CCCCC-cCCcCcce
Q 007656 482 EV-ISVGKFAETPEMMGHISPFENLQSLHLSQLPALKS--IYWKPLPFTHLKEISVGYCRNLKK--LPLDS-NSAKERKF 555 (594)
Q Consensus 482 ~~-~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~--l~~~~~~l~~L~~L~i~~C~~L~~--lp~~~-~~~~L~~l 555 (594)
.. +. .....+++|+.|+|++|. +.. ++.....+++|+.|++++|+ +.. ++... ..++|+.+
T Consensus 452 ~~~~~-----------~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L 518 (592)
T 3ogk_B 452 DLGLS-----------YIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYL 518 (592)
T ss_dssp HHHHH-----------HHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEE
T ss_pred HHHHH-----------HHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCee
Confidence 11 11 011236667777777663 332 11112345777777777776 432 22111 22667777
Q ss_pred EEEccH
Q 007656 556 VIRGEE 561 (594)
Q Consensus 556 ~I~~~~ 561 (594)
++++|.
T Consensus 519 ~ls~n~ 524 (592)
T 3ogk_B 519 WVQGYR 524 (592)
T ss_dssp EEESCB
T ss_pred ECcCCc
Confidence 777664
No 68
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=1.9e-17 Score=167.54 Aligned_cols=235 Identities=18% Similarity=0.163 Sum_probs=135.3
Q ss_pred cccccccccccccCchhhcCCCcccEEEccCCcCcccccCc-hHHhhhhcCcEEEccCCcc-cccch-hhhccCcCcEEe
Q 007656 224 TLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPL-AMSELGSSLELLDISYASI-TELPE-ELKLLVNLKCLN 300 (594)
Q Consensus 224 ~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~-~i~~l~~~L~~L~ls~~~l-~~lp~-~i~~L~~L~~L~ 300 (594)
+++. .++.++++|..+ .+++++|+|++| .| +.+|. .|..+. +|++|+|++|.+ +.+|. .|.++++|+++.
T Consensus 13 ~v~C-~~~~Lt~iP~~l---~~~l~~L~Ls~N-~i-~~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 13 VFLC-QESKVTEIPSDL---PRNAIELRFVLT-KL-RVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp EEEE-ESTTCCSCCTTC---CTTCSEEEEESC-CC-SEECTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred EEEe-cCCCCCccCcCc---CCCCCEEEccCC-cC-CCcCHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 3444 444556666542 245666666666 66 55653 355666 666666666654 33443 355566555433
Q ss_pred -cCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcC
Q 007656 301 -LRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSS 379 (594)
Q Consensus 301 -L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 379 (594)
+.+| .+..++.+.+..+++|++|++++|.+...... .+....
T Consensus 86 ~~~~N-~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~---------------~~~~~~--------------------- 128 (350)
T 4ay9_X 86 IEKAN-NLLYINPEAFQNLPNLQYLLISNTGIKHLPDV---------------HKIHSL--------------------- 128 (350)
T ss_dssp EEEET-TCCEECTTSBCCCTTCCEEEEEEECCSSCCCC---------------TTCCBS---------------------
T ss_pred cccCC-cccccCchhhhhccccccccccccccccCCch---------------hhcccc---------------------
Confidence 3333 55666555556666666666666655431100 011111
Q ss_pred chhhhcceeEEE-EeCCCcccccccccccCc-cCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCC
Q 007656 380 NKLKSCIRSLYL-HLTGDTASIIDATVFADL-NQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKL 457 (594)
Q Consensus 380 ~~~~~~L~~L~L-~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l 457 (594)
++..|.+ +++.... + ....+..+ ..++.|++++|.. +.++...+ ...+|+.|.+.+++.+
T Consensus 129 -----~l~~l~l~~~~~i~~-l-~~~~f~~~~~~l~~L~L~~N~i-~~i~~~~f----------~~~~L~~l~l~~~n~l 190 (350)
T 4ay9_X 129 -----QKVLLDIQDNINIHT-I-ERNSFVGLSFESVILWLNKNGI-QEIHNSAF----------NGTQLDELNLSDNNNL 190 (350)
T ss_dssp -----SCEEEEEESCTTCCE-E-CTTSSTTSBSSCEEEECCSSCC-CEECTTSS----------TTEEEEEEECTTCTTC
T ss_pred -----hhhhhhhcccccccc-c-cccchhhcchhhhhhccccccc-cCCChhhc----------cccchhHHhhccCCcc
Confidence 2333333 3333333 2 11233333 4577888887544 44444433 3567888888877888
Q ss_pred ccccc--cccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCCCCccCCCccEEeec
Q 007656 458 KDVTF--LIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKPLPFTHLKEISVG 535 (594)
Q Consensus 458 ~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~l~~L~~L~i~ 535 (594)
+.+|. ++.+++|++|+|++| .++.++. ..|.+|+.|.+.++.+++.+|. ...+++|+.+++.
T Consensus 191 ~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~--------------~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 191 EELPNDVFHGASGPVILDISRT-RIHSLPS--------------YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT 254 (350)
T ss_dssp CCCCTTTTTTEECCSEEECTTS-CCCCCCS--------------SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred cCCCHHHhccCcccchhhcCCC-CcCccCh--------------hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence 88873 778888888888888 5666532 3467777777777777888874 4567888888875
Q ss_pred c
Q 007656 536 Y 536 (594)
Q Consensus 536 ~ 536 (594)
+
T Consensus 255 ~ 255 (350)
T 4ay9_X 255 Y 255 (350)
T ss_dssp C
T ss_pred C
Confidence 4
No 69
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=1e-17 Score=166.13 Aligned_cols=102 Identities=20% Similarity=0.227 Sum_probs=48.4
Q ss_pred CCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCcE
Q 007656 219 CPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLKC 298 (594)
Q Consensus 219 ~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~ 298 (594)
+++|+.|++ .++.+..++. +..+++|++|++++| .+ ..++. +..+. +|++|++++|.++.+| .+..+++|++
T Consensus 40 l~~L~~L~l-~~~~i~~l~~--~~~l~~L~~L~L~~n-~i-~~~~~-~~~l~-~L~~L~L~~n~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 40 LDGITTLSA-FGTGVTTIEG--VQYLNNLIGLELKDN-QI-TDLAP-LKNLT-KITELELSGNPLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHTCCEEEC-TTSCCCCCTT--GGGCTTCCEEECCSS-CC-CCCGG-GTTCC-SCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred cCCcCEEEe-eCCCccCchh--hhccCCCCEEEccCC-cC-CCChh-HccCC-CCCEEEccCCcCCCch-hhcCCCCCCE
Confidence 444555555 3334444432 444555555555555 44 44443 44444 5555555555444443 3444455555
Q ss_pred EecCCCCCCCCcchhhhcCCCCCcEEEecCCCC
Q 007656 299 LNLRWTDTLNKIPRQLISILSWLRVLRMLGTGW 331 (594)
Q Consensus 299 L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~ 331 (594)
|++++| .+..++. +..+++|++|++++|.+
T Consensus 112 L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l 141 (308)
T 1h6u_A 112 LDLTST-QITDVTP--LAGLSNLQVLYLDLNQI 141 (308)
T ss_dssp EECTTS-CCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCC-CCCCchh--hcCCCCCCEEECCCCcc
Confidence 555554 3444443 44455555555554443
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=4e-17 Score=158.75 Aligned_cols=196 Identities=21% Similarity=0.237 Sum_probs=134.2
Q ss_pred CcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCc-hHHhhhhcCcEEEccCCcccccchh-hhccCcCcE
Q 007656 221 HLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPL-AMSELGSSLELLDISYASITELPEE-LKLLVNLKC 298 (594)
Q Consensus 221 ~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~-~i~~l~~~L~~L~ls~~~l~~lp~~-i~~L~~L~~ 298 (594)
+.+.+++ .++.++.+|..+ .++|++|++++| .+ ..+|. .+..+. +|++|++++|.++.+|.. +.++++|++
T Consensus 17 ~~~~l~~-~~~~l~~ip~~~---~~~l~~L~l~~n-~l-~~~~~~~~~~l~-~L~~L~l~~n~l~~i~~~~~~~l~~L~~ 89 (270)
T 2o6q_A 17 NKNSVDC-SSKKLTAIPSNI---PADTKKLDLQSN-KL-SSLPSKAFHRLT-KLRLLYLNDNKLQTLPAGIFKELKNLET 89 (270)
T ss_dssp TTTEEEC-TTSCCSSCCSCC---CTTCSEEECCSS-CC-SCCCTTSSSSCT-TCCEEECCSSCCSCCCTTTTSSCTTCCE
T ss_pred CCCEEEc-cCCCCCccCCCC---CCCCCEEECcCC-CC-CeeCHHHhcCCC-CCCEEECCCCccCeeChhhhcCCCCCCE
Confidence 5677888 667777887652 257888888888 88 66654 677888 888888888888888864 577888888
Q ss_pred EecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhc
Q 007656 299 LNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLS 378 (594)
Q Consensus 299 L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 378 (594)
|++++| .+..+|.+.+.++++|++|++++|.+... .+..+.++++|+.|+++.+..
T Consensus 90 L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------~~~~~~~l~~L~~L~Ls~n~l-------- 145 (270)
T 2o6q_A 90 LWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSL---------------PPRVFDSLTKLTYLSLGYNEL-------- 145 (270)
T ss_dssp EECCSS-CCCCCCTTTTTTCSSCCEEECCSSCCCCC---------------CTTTTTTCTTCCEEECCSSCC--------
T ss_pred EECCCC-cCCcCCHhHcccccCCCEEECCCCccCee---------------CHHHhCcCcCCCEEECCCCcC--------
Confidence 888888 67888876678888888888888877642 122355666666666654322
Q ss_pred CchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCc
Q 007656 379 SNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLK 458 (594)
Q Consensus 379 ~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~ 458 (594)
.. + ....+..+++|+.|++++|.... +++..+. .+++|+.|++++| .++
T Consensus 146 ------------------~~-~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~---------~l~~L~~L~L~~N-~l~ 194 (270)
T 2o6q_A 146 ------------------QS-L-PKGVFDKLTSLKELRLYNNQLKR-VPEGAFD---------KLTELKTLKLDNN-QLK 194 (270)
T ss_dssp ------------------CC-C-CTTTTTTCTTCCEEECCSSCCSC-CCTTTTT---------TCTTCCEEECCSS-CCS
T ss_pred ------------------Cc-c-CHhHccCCcccceeEecCCcCcE-eChhHhc---------cCCCcCEEECCCC-cCC
Confidence 21 1 11245667778888887764433 3333332 5677778888774 555
Q ss_pred ccc--ccccCCCCceEeEccCc
Q 007656 459 DVT--FLIFAPNLKSLDLSYCS 478 (594)
Q Consensus 459 ~l~--~l~~l~~L~~L~L~~~~ 478 (594)
.++ .+..+++|+.|+|++|+
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 195 RVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCHHHhccccCCCEEEecCCC
Confidence 555 26677777777777774
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=2.5e-17 Score=160.89 Aligned_cols=199 Identities=23% Similarity=0.165 Sum_probs=108.6
Q ss_pred CcccccccccccccccCchhhcCCCcccEEEccCCcCcccccC-chHHhhhhcCcEEEccCCcccccch-hhhccCcCcE
Q 007656 221 HLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLP-LAMSELGSSLELLDISYASITELPE-ELKLLVNLKC 298 (594)
Q Consensus 221 ~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp-~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L~~ 298 (594)
+|++|++ +++.++.++...|.++++|++|++++| .+ ..++ ..+..+. +|++|++++|.++.++. .+.++++|++
T Consensus 29 ~l~~L~l-s~n~l~~~~~~~~~~l~~L~~L~l~~n-~l-~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 29 STKNLDL-SFNPLRHLGSYSFFSFPELQVLDLSRC-EI-QTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQK 104 (276)
T ss_dssp TCCEEEC-TTCCCCEECTTTTTTCTTCSEEECTTC-CC-CEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CccEEEC-CCCcccccCHhHhccccCCcEEECCCC-cC-CccCHHHccCCc-CCCEEECCCCccCccChhhhcCCccccE
Confidence 4666666 555566665544666666666666666 66 4443 3555666 66666666666665553 5666666666
Q ss_pred EecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhc
Q 007656 299 LNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLS 378 (594)
Q Consensus 299 L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 378 (594)
|++++| .+..++...++.+++|++|++++|.+.... .+..+.++++|+.|+++.|....
T Consensus 105 L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------l~~~~~~l~~L~~L~Ls~N~l~~------ 163 (276)
T 2z62_A 105 LVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFK--------------LPEYFSNLTNLEHLDLSSNKIQS------ 163 (276)
T ss_dssp EECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCC--------------CCGGGGGCTTCCEEECCSSCCCE------
T ss_pred EECCCC-CccccCchhcccCCCCCEEECcCCccceec--------------CchhhccCCCCCEEECCCCCCCc------
Confidence 666666 455555433566666666666666554311 23335555555555555433221
Q ss_pred CchhhhcceeEEEEeCCCcccccccccccCccCCc----eEEecccCCceeeeecccccccccCCCccCCCcceEeEecC
Q 007656 379 SNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLN----QLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQC 454 (594)
Q Consensus 379 ~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~----~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 454 (594)
+ ....+..+++|+ +|++++|.... +++..+ ...+|+.|++++|
T Consensus 164 ---------------------~-~~~~~~~l~~L~~l~l~L~ls~n~l~~-~~~~~~----------~~~~L~~L~L~~n 210 (276)
T 2z62_A 164 ---------------------I-YCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAF----------KEIRLKELALDTN 210 (276)
T ss_dssp ---------------------E-CGGGGHHHHTCTTCCEEEECCSSCCCE-ECTTSS----------CSCCEEEEECCSS
T ss_pred ---------------------C-CHHHhhhhhhccccceeeecCCCcccc-cCcccc----------CCCcccEEECCCC
Confidence 1 111222233333 56666654332 333222 2336777777764
Q ss_pred CCCccccc--cccCCCCceEeEccCc
Q 007656 455 HKLKDVTF--LIFAPNLKSLDLSYCS 478 (594)
Q Consensus 455 ~~l~~l~~--l~~l~~L~~L~L~~~~ 478 (594)
.++.+|. +..+++|++|+|++|+
T Consensus 211 -~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 211 -QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp -CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred -ceeecCHhHhcccccccEEEccCCc
Confidence 3555542 5667777777777663
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=5.6e-17 Score=157.73 Aligned_cols=198 Identities=22% Similarity=0.272 Sum_probs=142.5
Q ss_pred CcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccch-hhhccCcCcEEecCCCCCCCCcchhhhcCCCCCcE
Q 007656 245 PSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPE-ELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLRV 323 (594)
Q Consensus 245 ~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~~ 323 (594)
...+.++++++ .+ ..+|..+. . +|++|++++|.++.+|. .+.++++|++|++++| .++.+|.+.+.++++|++
T Consensus 16 ~~~~~l~~~~~-~l-~~ip~~~~--~-~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~ 89 (270)
T 2o6q_A 16 NNKNSVDCSSK-KL-TAIPSNIP--A-DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLET 89 (270)
T ss_dssp TTTTEEECTTS-CC-SSCCSCCC--T-TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCE
T ss_pred CCCCEEEccCC-CC-CccCCCCC--C-CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCE
Confidence 35789999999 99 88887654 4 89999999999999986 7899999999999999 788999887789999999
Q ss_pred EEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcCchhhhcceeEEEEeCCCccccccc
Q 007656 324 LRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLHLTGDTASIIDA 403 (594)
Q Consensus 324 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 403 (594)
|++++|.+... ....+.++++|+.|+++.+.. .. + ..
T Consensus 90 L~l~~n~l~~~---------------~~~~~~~l~~L~~L~l~~n~l--------------------------~~-~-~~ 126 (270)
T 2o6q_A 90 LWVTDNKLQAL---------------PIGVFDQLVNLAELRLDRNQL--------------------------KS-L-PP 126 (270)
T ss_dssp EECCSSCCCCC---------------CTTTTTTCSSCCEEECCSSCC--------------------------CC-C-CT
T ss_pred EECCCCcCCcC---------------CHhHcccccCCCEEECCCCcc--------------------------Ce-e-CH
Confidence 99999987652 122356666666666654322 21 1 12
Q ss_pred ccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCcccc--ccccCCCCceEeEccCccch
Q 007656 404 TVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDVT--FLIFAPNLKSLDLSYCSSME 481 (594)
Q Consensus 404 ~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~ 481 (594)
..+..+++|+.|++++|... .+++..+. .+++|+.|++++| .++.++ .+..+++|++|+|++| .++
T Consensus 127 ~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~---------~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 194 (270)
T 2o6q_A 127 RVFDSLTKLTYLSLGYNELQ-SLPKGVFD---------KLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-QLK 194 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCC-CCCTTTTT---------TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CCS
T ss_pred HHhCcCcCCCEEECCCCcCC-ccCHhHcc---------CCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-cCC
Confidence 24667788888888886443 33333332 5778888888874 555555 3677788888888877 455
Q ss_pred hhhccCccCCCCcccCCCccccccceecccccc
Q 007656 482 EVISVGKFAETPEMMGHISPFENLQSLHLSQLP 514 (594)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 514 (594)
.++. ..+..+++|+.|+|.+++
T Consensus 195 ~~~~-----------~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 195 RVPE-----------GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCCT-----------TTTTTCTTCCEEECCSSC
T ss_pred cCCH-----------HHhccccCCCEEEecCCC
Confidence 4433 245667778888877764
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=3.9e-17 Score=159.46 Aligned_cols=213 Identities=19% Similarity=0.169 Sum_probs=132.4
Q ss_pred ccccccccCchhhcCCCcccEEEccCCcCcccccCc-hHHhhhhcCcEEEccCCcccccch-hhhccCcCcEEecCCCCC
Q 007656 229 SNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPL-AMSELGSSLELLDISYASITELPE-ELKLLVNLKCLNLRWTDT 306 (594)
Q Consensus 229 ~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~-~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L~~L~L~~~~~ 306 (594)
.+..+..+|.. + .++|++|++++| .+ ..++. .+..+. +|++|++++|.++.++. .+.++++|++|++++| .
T Consensus 15 ~~~~l~~ip~~-l--~~~l~~L~ls~n-~l-~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~ 87 (276)
T 2z62_A 15 MELNFYKIPDN-L--PFSTKNLDLSFN-PL-RHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-P 87 (276)
T ss_dssp TTSCCSSCCSS-S--CTTCCEEECTTC-CC-CEECTTTTTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-C
T ss_pred cCCCccccCCC-C--CCCccEEECCCC-cc-cccCHhHhcccc-CCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-c
Confidence 33445667765 2 257899999999 88 66654 788888 99999999998888876 6888899999999998 6
Q ss_pred CCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcCchhhhcc
Q 007656 307 LNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCI 386 (594)
Q Consensus 307 l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 386 (594)
+..++.+.+.++++|++|++.+|.+.... ...+.++++|+.|+++.|..
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------~~~~~~l~~L~~L~l~~n~l---------------- 136 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLE---------------NFPIGHLKTLKELNVAHNLI---------------- 136 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCST---------------TCCCTTCTTCCEEECCSSCC----------------
T ss_pred cCccChhhhcCCccccEEECCCCCccccC---------------chhcccCCCCCEEECcCCcc----------------
Confidence 77777656888999999999888776411 11255566666665553322
Q ss_pred eeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcc----eEeEecCCCCcccc-
Q 007656 387 RSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLH----CVRIEQCHKLKDVT- 461 (594)
Q Consensus 387 ~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~----~L~L~~c~~l~~l~- 461 (594)
.. +.....+..+++|+.|++++|.... +++..+. .+++|+ .|++++| .+..++
T Consensus 137 ----------~~-~~l~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~---------~l~~L~~l~l~L~ls~n-~l~~~~~ 194 (276)
T 2z62_A 137 ----------QS-FKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLR---------VLHQMPLLNLSLDLSLN-PMNFIQP 194 (276)
T ss_dssp ----------CC-CCCCGGGGGCTTCCEEECCSSCCCE-ECGGGGH---------HHHTCTTCCEEEECCSS-CCCEECT
T ss_pred ----------ce-ecCchhhccCCCCCEEECCCCCCCc-CCHHHhh---------hhhhccccceeeecCCC-cccccCc
Confidence 11 1112255666777777777754433 3333332 334444 5666663 344443
Q ss_pred ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceeccccc
Q 007656 462 FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQL 513 (594)
Q Consensus 462 ~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 513 (594)
......+|++|++++| .++.++. ..+..+++|+.|+++++
T Consensus 195 ~~~~~~~L~~L~L~~n-~l~~~~~-----------~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 195 GAFKEIRLKELALDTN-QLKSVPD-----------GIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp TSSCSCCEEEEECCSS-CCSCCCT-----------TTTTTCCSCCEEECCSS
T ss_pred cccCCCcccEEECCCC-ceeecCH-----------hHhcccccccEEEccCC
Confidence 2333346666666666 3443332 12345566666666654
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=2.1e-17 Score=160.87 Aligned_cols=105 Identities=21% Similarity=0.354 Sum_probs=49.8
Q ss_pred CCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccch-hhhccCcCc
Q 007656 219 CPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPE-ELKLLVNLK 297 (594)
Q Consensus 219 ~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L~ 297 (594)
+++|+.|++ .++.+..++. +..+++|++|++++| .+ ..++ .+..+. +|++|++++|.++.+|. .+.++++|+
T Consensus 40 l~~L~~L~l-~~~~i~~~~~--l~~l~~L~~L~l~~n-~l-~~~~-~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 40 LNSIDQIIA-NNSDIKSVQG--IQYLPNVRYLALGGN-KL-HDIS-ALKELT-NLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HTTCCEEEC-TTSCCCCCTT--GGGCTTCCEEECTTS-CC-CCCG-GGTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccceeeeee-CCCCcccccc--cccCCCCcEEECCCC-CC-CCch-hhcCCC-CCCEEECCCCccCccChhHhcCCcCCC
Confidence 444555555 3344444432 444555555555555 44 3332 344444 55555555555554443 234455555
Q ss_pred EEecCCCCCCCCcchhhhcCCCCCcEEEecCCCC
Q 007656 298 CLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGW 331 (594)
Q Consensus 298 ~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~ 331 (594)
+|++++| .+..+|...++++++|++|++++|.+
T Consensus 113 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l 145 (272)
T 3rfs_A 113 ELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQL 145 (272)
T ss_dssp EEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEECCCC-cCCccCHHHhccCCCCCEEECCCCcc
Confidence 5555555 34444443344455555555554443
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=1.3e-17 Score=159.23 Aligned_cols=107 Identities=21% Similarity=0.245 Sum_probs=94.4
Q ss_pred CCcccccccccccccccCchhhcCCCcccEEEccCCcC-cccccCc-hHHhhhhcCcEEEccC-Ccccccch-hhhccCc
Q 007656 220 PHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWN-FTLKLPL-AMSELGSSLELLDISY-ASITELPE-ELKLLVN 295 (594)
Q Consensus 220 ~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~-l~~~lp~-~i~~l~~~L~~L~ls~-~~l~~lp~-~i~~L~~ 295 (594)
++|+.|++ .++.++.++...|.++++|++|++++| . + +.+|. .+..+. +|++|++++ |.++.+|. .+..+++
T Consensus 31 ~~l~~L~l-~~n~l~~i~~~~~~~l~~L~~L~l~~n-~~l-~~i~~~~f~~l~-~L~~L~l~~~n~l~~i~~~~f~~l~~ 106 (239)
T 2xwt_C 31 PSTQTLKL-IETHLRTIPSHAFSNLPNISRIYVSID-VTL-QQLESHSFYNLS-KVTHIEIRNTRNLTYIDPDALKELPL 106 (239)
T ss_dssp TTCCEEEE-ESCCCSEECTTTTTTCTTCCEEEEECC-SSC-CEECTTTEESCT-TCCEEEEEEETTCCEECTTSEECCTT
T ss_pred CcccEEEE-eCCcceEECHHHccCCCCCcEEeCCCC-CCc-ceeCHhHcCCCc-CCcEEECCCCCCeeEcCHHHhCCCCC
Confidence 48999999 778899999888999999999999999 7 8 77765 688899 999999999 89999986 6889999
Q ss_pred CcEEecCCCCCCCCcchhhhcCCCCCc---EEEecCC-CCCc
Q 007656 296 LKCLNLRWTDTLNKIPRQLISILSWLR---VLRMLGT-GWFN 333 (594)
Q Consensus 296 L~~L~L~~~~~l~~lp~~~~~~L~~L~---~L~l~~~-~~~~ 333 (594)
|++|++++| .++.+|. +..+++|+ +|++++| .+..
T Consensus 107 L~~L~l~~n-~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~ 145 (239)
T 2xwt_C 107 LKFLGIFNT-GLKMFPD--LTKVYSTDIFFILEITDNPYMTS 145 (239)
T ss_dssp CCEEEEEEE-CCCSCCC--CTTCCBCCSEEEEEEESCTTCCE
T ss_pred CCEEeCCCC-CCccccc--cccccccccccEEECCCCcchhh
Confidence 999999999 7888997 88888888 9999988 5543
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=4.3e-17 Score=160.06 Aligned_cols=198 Identities=16% Similarity=0.130 Sum_probs=152.0
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccccchhhhccCcC
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITELPEELKLLVNL 296 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L 296 (594)
++++++.+++ .++.++.+|..+ .+++++|++++| .+ ..+ |..+..+. +|++|++++|.++.+|.. +.+++|
T Consensus 8 ~l~~l~~l~~-~~~~l~~ip~~~---~~~l~~L~L~~N-~l-~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~-~~l~~L 79 (290)
T 1p9a_G 8 KVASHLEVNC-DKRNLTALPPDL---PKDTTILHLSEN-LL-YTFSLATLMPYT-RLTQLNLDRAELTKLQVD-GTLPVL 79 (290)
T ss_dssp CSTTCCEEEC-TTSCCSSCCSCC---CTTCCEEECTTS-CC-SEEEGGGGTTCT-TCCEEECTTSCCCEEECC-SCCTTC
T ss_pred ccCCccEEEC-CCCCCCcCCCCC---CCCCCEEEcCCC-cC-CccCHHHhhcCC-CCCEEECCCCccCcccCC-CCCCcC
Confidence 6788999999 778888998763 268999999999 88 665 67788898 999999999999988864 789999
Q ss_pred cEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHH
Q 007656 297 KCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQIL 376 (594)
Q Consensus 297 ~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 376 (594)
++|++++| .+..+|.. +..+++|++|++++|.+... .+..+.++++|+.|+++.|..
T Consensus 80 ~~L~Ls~N-~l~~l~~~-~~~l~~L~~L~l~~N~l~~l---------------~~~~~~~l~~L~~L~L~~N~l------ 136 (290)
T 1p9a_G 80 GTLDLSHN-QLQSLPLL-GQTLPALTVLDVSFNRLTSL---------------PLGALRGLGELQELYLKGNEL------ 136 (290)
T ss_dssp CEEECCSS-CCSSCCCC-TTTCTTCCEEECCSSCCCCC---------------CSSTTTTCTTCCEEECTTSCC------
T ss_pred CEEECCCC-cCCcCchh-hccCCCCCEEECCCCcCccc---------------CHHHHcCCCCCCEEECCCCCC------
Confidence 99999999 78899985 88999999999999988752 123366777777777664432
Q ss_pred hcCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCC
Q 007656 377 LSSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHK 456 (594)
Q Consensus 377 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~ 456 (594)
.. + ....+..+++|+.|++++|... .+++..+. .+++|+.|++++| .
T Consensus 137 --------------------~~-~-~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~---------~l~~L~~L~L~~N-~ 183 (290)
T 1p9a_G 137 --------------------KT-L-PPGLLTPTPKLEKLSLANNNLT-ELPAGLLN---------GLENLDTLLLQEN-S 183 (290)
T ss_dssp --------------------CC-C-CTTTTTTCTTCCEEECTTSCCS-CCCTTTTT---------TCTTCCEEECCSS-C
T ss_pred --------------------Cc-c-ChhhcccccCCCEEECCCCcCC-ccCHHHhc---------CcCCCCEEECCCC-c
Confidence 22 2 2235677888999999886544 34444433 6888999999884 6
Q ss_pred Ccccc-ccccCCCCceEeEccCcc
Q 007656 457 LKDVT-FLIFAPNLKSLDLSYCSS 479 (594)
Q Consensus 457 l~~l~-~l~~l~~L~~L~L~~~~~ 479 (594)
++.+| .+..+++|+.|+|++|+.
T Consensus 184 l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 184 LYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CCccChhhcccccCCeEEeCCCCc
Confidence 66776 567778899999988754
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.71 E-value=7.7e-18 Score=169.51 Aligned_cols=224 Identities=17% Similarity=0.118 Sum_probs=141.9
Q ss_pred CcccccccccccccccCchhhcCC--CcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccc--cchhhhccCcC
Q 007656 221 HLHTLFLASNNSLQRITDGFFQLM--PSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITE--LPEELKLLVNL 296 (594)
Q Consensus 221 ~L~~L~L~~~~~l~~l~~~~~~~l--~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~--lp~~i~~L~~L 296 (594)
.++.+++ .++.+. +..+..+ +++++|++++| .+ ...+..+..+. +|++|++++|.++. +|..+..+++|
T Consensus 48 ~~~~l~l-~~~~~~---~~~~~~~~~~~l~~L~l~~n-~l-~~~~~~~~~~~-~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 48 LWQTLDL-TGKNLH---PDVTGRLLSQGVIAFRCPRS-FM-DQPLAEHFSPF-RVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp TSSEEEC-TTCBCC---HHHHHHHHHTTCSEEECTTC-EE-CSCCCSCCCCB-CCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred hheeecc-ccccCC---HHHHHhhhhccceEEEcCCc-cc-cccchhhccCC-CCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 3667777 444333 3446666 78888888888 77 55555566777 88888888887763 77778888888
Q ss_pred cEEecCCCCCCC-CcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEc-chhhHH
Q 007656 297 KCLNLRWTDTLN-KIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLG-SYHALQ 374 (594)
Q Consensus 297 ~~L~L~~~~~l~-~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~-~~~~~~ 374 (594)
++|++++| .+. ..|.. ++.+++|++|++++|...+ +...+..+.++++|+.|+++.+ .....
T Consensus 121 ~~L~L~~~-~l~~~~~~~-l~~~~~L~~L~L~~~~~l~-------------~~~l~~~~~~~~~L~~L~l~~~~~l~~~- 184 (336)
T 2ast_B 121 QNLSLEGL-RLSDPIVNT-LAKNSNLVRLNLSGCSGFS-------------EFALQTLLSSCSRLDELNLSWCFDFTEK- 184 (336)
T ss_dssp SEEECTTC-BCCHHHHHH-HTTCTTCSEEECTTCBSCC-------------HHHHHHHHHHCTTCCEEECCCCTTCCHH-
T ss_pred CEEeCcCc-ccCHHHHHH-HhcCCCCCEEECCCCCCCC-------------HHHHHHHHhcCCCCCEEcCCCCCCcChH-
Confidence 88888888 455 34443 7788888888888883222 1123444667777777777655 33221
Q ss_pred HHhcCchhhhcceeEEEEeCCCcccccccccccCcc-CCceEEecccC-Cce-eeeecccccccccCCCccCCCcceEeE
Q 007656 375 ILLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLN-QLNQLWIDEGI-ELE-ELKIDYTEIVRKRREPFVFRSLHCVRI 451 (594)
Q Consensus 375 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~-~~~-~l~~~~~~~~~~~~~~~~~~~L~~L~L 451 (594)
. ....+..++ +|++|++++|. .+. ...+..+ ..+++|+.|++
T Consensus 185 ~--------------------------~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~---------~~~~~L~~L~l 229 (336)
T 2ast_B 185 H--------------------------VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV---------RRCPNLVHLDL 229 (336)
T ss_dssp H--------------------------HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH---------HHCTTCSEEEC
T ss_pred H--------------------------HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH---------hhCCCCCEEeC
Confidence 0 111344556 77777777764 222 1112222 25777888888
Q ss_pred ecCCCCcc--ccccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceeccccc
Q 007656 452 EQCHKLKD--VTFLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQL 513 (594)
Q Consensus 452 ~~c~~l~~--l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 513 (594)
++|..++. ++.+..+++|++|++++|..+..... ..+..+++|+.|++++|
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-----------~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-----------LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-----------GGGGGCTTCCEEECTTS
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH-----------HHHhcCCCCCEEeccCc
Confidence 87764443 34577778888888887753322100 13566788888888777
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=4.6e-17 Score=158.51 Aligned_cols=223 Identities=17% Similarity=0.128 Sum_probs=149.5
Q ss_pred CcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCcEEe
Q 007656 221 HLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLKCLN 300 (594)
Q Consensus 221 ~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L~ 300 (594)
.+..+.+ ....+..... +..+++|+.|++++| .+ ..++ .+..+. +|++|++++|.++.++ .+..+++|++|+
T Consensus 20 ~l~~l~l-~~~~~~~~~~--~~~l~~L~~L~l~~~-~i-~~~~-~l~~l~-~L~~L~l~~n~l~~~~-~l~~l~~L~~L~ 91 (272)
T 3rfs_A 20 ETIKANL-KKKSVTDAVT--QNELNSIDQIIANNS-DI-KSVQ-GIQYLP-NVRYLALGGNKLHDIS-ALKELTNLTYLI 91 (272)
T ss_dssp HHHHHHH-TCSCTTSEEC--HHHHTTCCEEECTTS-CC-CCCT-TGGGCT-TCCEEECTTSCCCCCG-GGTTCTTCCEEE
T ss_pred HHHHHHh-cCcccccccc--cccccceeeeeeCCC-Cc-cccc-ccccCC-CCcEEECCCCCCCCch-hhcCCCCCCEEE
Confidence 3444445 3344444333 567888999999998 88 6665 478888 9999999999888876 788899999999
Q ss_pred cCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcCc
Q 007656 301 LRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSN 380 (594)
Q Consensus 301 L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~ 380 (594)
+++| .++.++...+.++++|++|++++|.+... ....+.++++|+.|+++.|..
T Consensus 92 L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------~~~~~~~l~~L~~L~L~~n~l---------- 145 (272)
T 3rfs_A 92 LTGN-QLQSLPNGVFDKLTNLKELVLVENQLQSL---------------PDGVFDKLTNLTYLNLAHNQL---------- 145 (272)
T ss_dssp CTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCC---------------CTTTTTTCTTCCEEECCSSCC----------
T ss_pred CCCC-ccCccChhHhcCCcCCCEEECCCCcCCcc---------------CHHHhccCCCCCEEECCCCcc----------
Confidence 9998 78888877678899999999998887642 222256666666666654432
Q ss_pred hhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCccc
Q 007656 381 KLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDV 460 (594)
Q Consensus 381 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l 460 (594)
.. + ....+..+++|+.|++++|... .+++..+. .+++|+.|++++| .+..+
T Consensus 146 ----------------~~-~-~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~---------~l~~L~~L~L~~N-~l~~~ 196 (272)
T 3rfs_A 146 ----------------QS-L-PKGVFDKLTNLTELDLSYNQLQ-SLPEGVFD---------KLTQLKDLRLYQN-QLKSV 196 (272)
T ss_dssp ----------------CC-C-CTTTTTTCTTCCEEECCSSCCC-CCCTTTTT---------TCTTCCEEECCSS-CCSCC
T ss_pred ----------------Cc-c-CHHHhccCccCCEEECCCCCcC-ccCHHHhc---------CCccCCEEECCCC-cCCcc
Confidence 11 1 1124566778888888876543 33333332 5778888888875 45555
Q ss_pred c--ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCCCCcc
Q 007656 461 T--FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKPLP 525 (594)
Q Consensus 461 ~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~ 525 (594)
+ .++.+++|++|++++|+. .+.+|+|+.|.++.+..-..+|...+.
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~-------------------~~~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPW-------------------DCTCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCB-------------------CCCTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred CHHHHhCCcCCCEEEccCCCc-------------------cccCcHHHHHHHHHHhCCCcccCcccc
Confidence 4 267778888888887732 234667777777766444455554443
No 79
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=5.4e-17 Score=164.14 Aligned_cols=240 Identities=15% Similarity=0.131 Sum_probs=162.5
Q ss_pred cEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccch-hhhccCcCcEEecCCCCCCCCcchhhhcCCCCCcEEE-
Q 007656 248 KVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPE-ELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLRVLR- 325 (594)
Q Consensus 248 ~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~- 325 (594)
++++.+++ ++ +.+|..+ .. ++++|+|++|+|+.+|. .|.++++|++|+|++|...+.+|.++|.++++|+++.
T Consensus 12 ~~v~C~~~-~L-t~iP~~l--~~-~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQES-KV-TEIPSDL--PR-NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEEST-TC-CSCCTTC--CT-TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CEEEecCC-CC-CccCcCc--CC-CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 45667777 77 7788765 24 78888888888888886 5788888888888888444667766677888877644
Q ss_pred ecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcCchhhhcceeEEEEeCCCccccccccc
Q 007656 326 MLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLHLTGDTASIIDATV 405 (594)
Q Consensus 326 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~ 405 (594)
+..|.+... .+..+..+++|+.|+++.+.... + ....
T Consensus 87 ~~~N~l~~l---------------~~~~f~~l~~L~~L~l~~n~l~~---------------------------~-~~~~ 123 (350)
T 4ay9_X 87 EKANNLLYI---------------NPEAFQNLPNLQYLLISNTGIKH---------------------------L-PDVH 123 (350)
T ss_dssp EEETTCCEE---------------CTTSBCCCTTCCEEEEEEECCSS---------------------------C-CCCT
T ss_pred ccCCccccc---------------Cchhhhhcccccccccccccccc---------------------------C-Cchh
Confidence 444555441 23346777777777777554321 1 1112
Q ss_pred ccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCcccc-ccccCCCCceEeEccCccchhhh
Q 007656 406 FADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDVT-FLIFAPNLKSLDLSYCSSMEEVI 484 (594)
Q Consensus 406 l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~~~ 484 (594)
+....++..|++.++..+..++...+. .....++.|++++ +.++.++ .....++|++|.+.++..++.++
T Consensus 124 ~~~~~~l~~l~l~~~~~i~~l~~~~f~--------~~~~~l~~L~L~~-N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~ 194 (350)
T 4ay9_X 124 KIHSLQKVLLDIQDNINIHTIERNSFV--------GLSFESVILWLNK-NGIQEIHNSAFNGTQLDELNLSDNNNLEELP 194 (350)
T ss_dssp TCCBSSCEEEEEESCTTCCEECTTSST--------TSBSSCEEEECCS-SCCCEECTTSSTTEEEEEEECTTCTTCCCCC
T ss_pred hcccchhhhhhhccccccccccccchh--------hcchhhhhhcccc-ccccCCChhhccccchhHHhhccCCcccCCC
Confidence 334456777788777777666555443 2344677888887 4666665 34455678888888776777765
Q ss_pred ccCccCCCCcccCCCccccccceecccccccccccCCCCccCCCccEEeecccCCCCCCCCCCcCCcCcceEEE
Q 007656 485 SVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKPLPFTHLKEISVGYCRNLKKLPLDSNSAKERKFVIR 558 (594)
Q Consensus 485 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~L~~l~I~ 558 (594)
. ..+..+++|+.|+++++ .++.++.. .+.+|+.|.+.+|.+++.+|.....++|+.+++.
T Consensus 195 ~-----------~~f~~l~~L~~LdLs~N-~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 195 N-----------DVFHGASGPVILDISRT-RIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp T-----------TTTTTEECCSEEECTTS-CCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred H-----------HHhccCcccchhhcCCC-CcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 4 24677888888888887 67777653 4678888888888888888865555778877775
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=4e-17 Score=160.31 Aligned_cols=198 Identities=19% Similarity=0.141 Sum_probs=151.3
Q ss_pred hcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccch-hhhccCcCcEEecCCCCCCCCcchhhhcCCC
Q 007656 241 FQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPE-ELKLLVNLKCLNLRWTDTLNKIPRQLISILS 319 (594)
Q Consensus 241 ~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~ 319 (594)
++++++++.++++++ .+ ..+|..+. . ++++|++++|.++.++. .+..+++|++|++++| .++.++. .+.++
T Consensus 6 ~~~l~~l~~l~~~~~-~l-~~ip~~~~--~-~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~ 77 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NL-TALPPDLP--K-DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV--DGTLP 77 (290)
T ss_dssp EECSTTCCEEECTTS-CC-SSCCSCCC--T-TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC--CSCCT
T ss_pred ccccCCccEEECCCC-CC-CcCCCCCC--C-CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccC--CCCCC
Confidence 678899999999999 99 88987764 4 99999999999998864 7999999999999999 7888887 57899
Q ss_pred CCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcCchhhhcceeEEEEeCCCccc
Q 007656 320 WLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLHLTGDTAS 399 (594)
Q Consensus 320 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 399 (594)
+|++|++++|.+.. .+..+..+++|+.|+++.|.+ ..
T Consensus 78 ~L~~L~Ls~N~l~~----------------l~~~~~~l~~L~~L~l~~N~l--------------------------~~- 114 (290)
T 1p9a_G 78 VLGTLDLSHNQLQS----------------LPLLGQTLPALTVLDVSFNRL--------------------------TS- 114 (290)
T ss_dssp TCCEEECCSSCCSS----------------CCCCTTTCTTCCEEECCSSCC--------------------------CC-
T ss_pred cCCEEECCCCcCCc----------------CchhhccCCCCCEEECCCCcC--------------------------cc-
Confidence 99999999998764 223356667777666664432 22
Q ss_pred ccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCccccc--cccCCCCceEeEccC
Q 007656 400 IIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDVTF--LIFAPNLKSLDLSYC 477 (594)
Q Consensus 400 ~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~~ 477 (594)
+ ....+..+++|+.|++++|... .+++..+. .+++|+.|++++| .++.+|. +..+++|++|+|++|
T Consensus 115 l-~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~---------~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 115 L-PLGALRGLGELQELYLKGNELK-TLPPGLLT---------PTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp C-CSSTTTTCTTCCEEECTTSCCC-CCCTTTTT---------TCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred c-CHHHHcCCCCCCEEECCCCCCC-ccChhhcc---------cccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC
Confidence 2 2235778889999999987544 34444433 6888999999984 6777763 678899999999888
Q ss_pred ccchhhhccCccCCCCcccCCCccccccceecccccc
Q 007656 478 SSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLP 514 (594)
Q Consensus 478 ~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 514 (594)
.++.++. .+..+++|+.|+|.+++
T Consensus 183 -~l~~ip~------------~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 183 -SLYTIPK------------GFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp -CCCCCCT------------TTTTTCCCSEEECCSCC
T ss_pred -cCCccCh------------hhcccccCCeEEeCCCC
Confidence 5555544 55566788888888764
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=4.8e-17 Score=161.33 Aligned_cols=196 Identities=20% Similarity=0.226 Sum_probs=162.3
Q ss_pred hcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCcEEecCCCCCCCCcchhhhcCCCC
Q 007656 241 FQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLKCLNLRWTDTLNKIPRQLISILSW 320 (594)
Q Consensus 241 ~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~ 320 (594)
+..+++|++|++++| .+ ..+| .+..+. +|++|++++|.++.+|. +..+++|++|++++| .+..++. +..+++
T Consensus 37 ~~~l~~L~~L~l~~~-~i-~~l~-~~~~l~-~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~ 108 (308)
T 1h6u_A 37 QADLDGITTLSAFGT-GV-TTIE-GVQYLN-NLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVSA--IAGLQS 108 (308)
T ss_dssp HHHHHTCCEEECTTS-CC-CCCT-TGGGCT-TCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCGG--GTTCTT
T ss_pred HHHcCCcCEEEeeCC-Cc-cCch-hhhccC-CCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCchh--hcCCCC
Confidence 457889999999999 99 8887 588999 99999999999999997 999999999999999 6888875 999999
Q ss_pred CcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcCchhhhcceeEEEEeCCCcccc
Q 007656 321 LRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLHLTGDTASI 400 (594)
Q Consensus 321 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 400 (594)
|++|++++|.+.. . ..+..+++|+.|+++.+....+..+ ..+++|+.|+++.+.+.. +
T Consensus 109 L~~L~l~~n~l~~----------------~-~~l~~l~~L~~L~l~~n~l~~~~~l----~~l~~L~~L~l~~n~l~~-~ 166 (308)
T 1h6u_A 109 IKTLDLTSTQITD----------------V-TPLAGLSNLQVLYLDLNQITNISPL----AGLTNLQYLSIGNAQVSD-L 166 (308)
T ss_dssp CCEEECTTSCCCC----------------C-GGGTTCTTCCEEECCSSCCCCCGGG----GGCTTCCEEECCSSCCCC-C
T ss_pred CCEEECCCCCCCC----------------c-hhhcCCCCCCEEECCCCccCcCccc----cCCCCccEEEccCCcCCC-C
Confidence 9999999998864 1 2388999999999998887665542 335589999996666665 4
Q ss_pred cccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCccccccccCCCCceEeEccCccc
Q 007656 401 IDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDVTFLIFAPNLKSLDLSYCSSM 480 (594)
Q Consensus 401 ~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l 480 (594)
+ .+..+++|+.|++++|.... +++ + ..+++|+.|++++| .+..++++..+++|+.|++++|+ +
T Consensus 167 ~---~l~~l~~L~~L~l~~n~l~~-~~~--l---------~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~N~-i 229 (308)
T 1h6u_A 167 T---PLANLSKLTTLKADDNKISD-ISP--L---------ASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTNQT-I 229 (308)
T ss_dssp G---GGTTCTTCCEEECCSSCCCC-CGG--G---------GGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEEEE-E
T ss_pred h---hhcCCCCCCEEECCCCccCc-Chh--h---------cCCCCCCEEEccCC-ccCccccccCCCCCCEEEccCCe-e
Confidence 2 38889999999999976543 322 2 36899999999995 67787789999999999999994 4
Q ss_pred hhh
Q 007656 481 EEV 483 (594)
Q Consensus 481 ~~~ 483 (594)
...
T Consensus 230 ~~~ 232 (308)
T 1h6u_A 230 TNQ 232 (308)
T ss_dssp ECC
T ss_pred ecC
Confidence 443
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=2.1e-17 Score=174.43 Aligned_cols=217 Identities=18% Similarity=0.122 Sum_probs=166.6
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLK 297 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~ 297 (594)
.+++|++|+| +++.+..+++ |..+++|++|++++| .+ +.+|.. . +|++|++++|.++.+|. ..+++|+
T Consensus 56 ~l~~L~~L~L-s~N~l~~~~~--l~~l~~L~~L~Ls~N-~l-~~l~~~----~-~L~~L~L~~N~l~~~~~--~~l~~L~ 123 (487)
T 3oja_A 56 PFTKLELLNL-SSNVLYETLD--LESLSTLRTLDLNNN-YV-QELLVG----P-SIETLHAANNNISRVSC--SRGQGKK 123 (487)
T ss_dssp TCTTCCEEEC-TTSCCEEEEE--CTTCTTCCEEECCSS-EE-EEEEEC----T-TCCEEECCSSCCCCEEE--CCCSSCE
T ss_pred CCCCCCEEEe-eCCCCCCCcc--cccCCCCCEEEecCC-cC-CCCCCC----C-CcCEEECcCCcCCCCCc--cccCCCC
Confidence 7999999999 6777776666 899999999999999 99 777653 6 99999999999998875 3578999
Q ss_pred EEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhc-CCCCCcEEEEEEcchhhHHHH
Q 007656 298 CLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELL-GLKYLEVLELTLGSYHALQIL 376 (594)
Q Consensus 298 ~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~~L~l~~~~~~~~~~~ 376 (594)
+|++++| .+..+++..++++++|++|++++|.+... .+..+. ++++|+.|+++.|.+.
T Consensus 124 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---------------~~~~l~~~l~~L~~L~Ls~N~l~----- 182 (487)
T 3oja_A 124 NIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTV---------------NFAELAASSDTLEHLNLQYNFIY----- 182 (487)
T ss_dssp EEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCEE---------------EGGGGGGGTTTCCEEECTTSCCC-----
T ss_pred EEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCCc---------------ChHHHhhhCCcccEEecCCCccc-----
Confidence 9999999 77887655589999999999999988752 333444 6777777777654332
Q ss_pred hcCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCC
Q 007656 377 LSSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHK 456 (594)
Q Consensus 377 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~ 456 (594)
. + .....+++|+.|++++|.... +++. + ..+++|+.|++++| .
T Consensus 183 ---------------------~-~---~~~~~l~~L~~L~Ls~N~l~~-~~~~-~---------~~l~~L~~L~Ls~N-~ 225 (487)
T 3oja_A 183 ---------------------D-V---KGQVVFAKLKTLDLSSNKLAF-MGPE-F---------QSAAGVTWISLRNN-K 225 (487)
T ss_dssp ---------------------E-E---ECCCCCTTCCEEECCSSCCCE-ECGG-G---------GGGTTCSEEECTTS-C
T ss_pred ---------------------c-c---cccccCCCCCEEECCCCCCCC-CCHh-H---------cCCCCccEEEecCC-c
Confidence 2 1 123357899999999976554 4444 3 36899999999995 5
Q ss_pred Ccccc-ccccCCCCceEeEccCccc-hhhhccCccCCCCcccCCCccccccceecccccccc
Q 007656 457 LKDVT-FLIFAPNLKSLDLSYCSSM-EEVISVGKFAETPEMMGHISPFENLQSLHLSQLPAL 516 (594)
Q Consensus 457 l~~l~-~l~~l~~L~~L~L~~~~~l-~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L 516 (594)
+..+| .++.+++|+.|++++|+.. ..++. .+..++.|+.|.+..+..+
T Consensus 226 l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~------------~~~~l~~L~~l~~~~~~~~ 275 (487)
T 3oja_A 226 LVLIEKALRFSQNLEHFDLRGNGFHCGTLRD------------FFSKNQRVQTVAKQTVKKL 275 (487)
T ss_dssp CCEECTTCCCCTTCCEEECTTCCBCHHHHHH------------HHTTCHHHHHHHHHHHHHH
T ss_pred CcccchhhccCCCCCEEEcCCCCCcCcchHH------------HHHhCCCCcEEeccccccc
Confidence 66776 5888999999999999654 23333 5667888888888654433
No 83
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.69 E-value=7.1e-18 Score=177.58 Aligned_cols=287 Identities=18% Similarity=0.140 Sum_probs=183.8
Q ss_pred CcccccccccccccccC----chhhcCCCcccEEEccCCcCcccccCchHHh-----hhhcCcEEEccCCcccc-----c
Q 007656 221 HLHTLFLASNNSLQRIT----DGFFQLMPSLKVLKMSNCWNFTLKLPLAMSE-----LGSSLELLDISYASITE-----L 286 (594)
Q Consensus 221 ~L~~L~L~~~~~l~~l~----~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~-----l~~~L~~L~ls~~~l~~-----l 286 (594)
+|++|++ +++.++... ...+..+++|++|++++| .++...+..+.. .. +|++|++++|.++. +
T Consensus 86 ~L~~L~L-~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~-~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 86 KIQKLSL-QNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQC-RLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp CCCEEEC-TTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTC-CCCEEECTTSCCBGGGHHHH
T ss_pred ceeEEEc-cCCCCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCC-cceEEECCCCCCCHHHHHHH
Confidence 6888998 555565321 334788889999999998 772222444433 33 69999999988774 4
Q ss_pred chhhhccCcCcEEecCCCCCCCCcchhhhc-----CCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCc
Q 007656 287 PEELKLLVNLKCLNLRWTDTLNKIPRQLIS-----ILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLE 361 (594)
Q Consensus 287 p~~i~~L~~L~~L~L~~~~~l~~lp~~~~~-----~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 361 (594)
+..+..+++|++|++++| .+.......+. .+++|++|++++|.+.... ....+..+..+++|+
T Consensus 163 ~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~-----------~~~l~~~l~~~~~L~ 230 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN-----------CRDLCGIVASKASLR 230 (461)
T ss_dssp HHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH-----------HHHHHHHHHHCTTCC
T ss_pred HHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH-----------HHHHHHHHHhCCCcc
Confidence 566778889999999988 45543221122 4668999999988775411 112466678899999
Q ss_pred EEEEEEcchhhH--HHHhcC-chhhhcceeEEEEeCCCccccc---ccccccCccCCceEEecccCCceeeeeccccccc
Q 007656 362 VLELTLGSYHAL--QILLSS-NKLKSCIRSLYLHLTGDTASII---DATVFADLNQLNQLWIDEGIELEELKIDYTEIVR 435 (594)
Q Consensus 362 ~L~l~~~~~~~~--~~~~~~-~~~~~~L~~L~L~~~~~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~ 435 (594)
.|+++.+..... ..+... ....++|+.|+++.+.+.. .. ....+..+++|++|++++|.... ..+..+...
T Consensus 231 ~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~~l~~~~~L~~L~Ls~n~i~~-~~~~~l~~~- 307 (461)
T 1z7x_W 231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA-KGCGDLCRVLRAKESLKELSLAGNELGD-EGARLLCET- 307 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH-HHHHHHHHHHHHCTTCCEEECTTCCCHH-HHHHHHHHH-
T ss_pred EEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCH-HHHHHHHHHHhhCCCcceEECCCCCCch-HHHHHHHHH-
Confidence 999998875432 222111 1124589999994445544 11 12246668999999999975432 122222100
Q ss_pred ccCCCccCCCcceEeEecCCCCccc-----c-ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCc-ccccccee
Q 007656 436 KRREPFVFRSLHCVRIEQCHKLKDV-----T-FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHIS-PFENLQSL 508 (594)
Q Consensus 436 ~~~~~~~~~~L~~L~L~~c~~l~~l-----~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L 508 (594)
.....++|+.|++++|. ++.. + .+..+++|++|+|++| .+.+.... .+...+. ..++|+.|
T Consensus 308 ---l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~-------~l~~~l~~~~~~L~~L 375 (461)
T 1z7x_W 308 ---LLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVR-------ELCQGLGQPGSVLRVL 375 (461)
T ss_dssp ---HTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHH-------HHHHHHTSTTCCCCEE
T ss_pred ---hccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHH-------HHHHHHcCCCCceEEE
Confidence 00134689999999975 4432 2 4678899999999999 45543210 0000111 26799999
Q ss_pred ccccccccc-----ccCCCCccCCCccEEeecccC
Q 007656 509 HLSQLPALK-----SIYWKPLPFTHLKEISVGYCR 538 (594)
Q Consensus 509 ~L~~~~~L~-----~l~~~~~~l~~L~~L~i~~C~ 538 (594)
++++| .+. .++.....+++|+.|++++|+
T Consensus 376 ~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 376 WLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp ECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred ECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 99998 566 455444568999999999974
No 84
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.69 E-value=1.2e-18 Score=183.60 Aligned_cols=317 Identities=15% Similarity=0.105 Sum_probs=177.4
Q ss_pred CCCCcccccccccccccc-----cCchhhcCCCcccEEEccCCcCcccc-cCchHHhhhh----cCcEEEccCCccc---
Q 007656 218 TCPHLHTLFLASNNSLQR-----ITDGFFQLMPSLKVLKMSNCWNFTLK-LPLAMSELGS----SLELLDISYASIT--- 284 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~-----l~~~~~~~l~~L~~L~L~~~~~l~~~-lp~~i~~l~~----~L~~L~ls~~~l~--- 284 (594)
.+++|++|++ .++.+.. ++. .+..+++|++|++++| .+ +. .+..+....+ +|++|++++|.++
T Consensus 26 ~~~~L~~L~L-~~~~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n-~l-~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~ 101 (461)
T 1z7x_W 26 LLQQCQVVRL-DDCGLTEARCKDISS-ALRVNPALAELNLRSN-EL-GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG 101 (461)
T ss_dssp HHTTCSEEEE-ESSCCCHHHHHHHHH-HHHTCTTCCEEECTTC-CC-HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGG
T ss_pred hcCCccEEEc-cCCCCCHHHHHHHHH-HHHhCCCcCEEeCCCC-cC-ChHHHHHHHHHHhhCCCceeEEEccCCCCCHHH
Confidence 5678888888 4455543 233 3677888999999888 77 43 3444444331 4889999888877
Q ss_pred --ccchhhhccCcCcEEecCCCCCCCCcc-----hhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCC
Q 007656 285 --ELPEELKLLVNLKCLNLRWTDTLNKIP-----RQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGL 357 (594)
Q Consensus 285 --~lp~~i~~L~~L~~L~L~~~~~l~~lp-----~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 357 (594)
.+|..+..+++|++|++++| .+.... .......++|++|++++|.+.... .......+..+
T Consensus 102 ~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~-----------~~~l~~~l~~~ 169 (461)
T 1z7x_W 102 CGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS-----------CEPLASVLRAK 169 (461)
T ss_dssp HHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG-----------HHHHHHHHHHC
T ss_pred HHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH-----------HHHHHHHHhhC
Confidence 45777888888999999888 454322 121223567888888888765411 11245567778
Q ss_pred CCCcEEEEEEcchhhH--HHHhcCc-hhhhcceeEEEEeCCCccccc---ccccccCccCCceEEecccCCceeeeeccc
Q 007656 358 KYLEVLELTLGSYHAL--QILLSSN-KLKSCIRSLYLHLTGDTASII---DATVFADLNQLNQLWIDEGIELEELKIDYT 431 (594)
Q Consensus 358 ~~L~~L~l~~~~~~~~--~~~~~~~-~~~~~L~~L~L~~~~~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~ 431 (594)
++|+.|+++.+..... ..+.... ....+|+.|+++.+.+.. .. ....+..+++|++|++++|.... .....+
T Consensus 170 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~-~~~~~l~~~l~~~~~L~~L~Ls~n~l~~-~~~~~l 247 (461)
T 1z7x_W 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS-DNCRDLCGIVASKASLRELALGSNKLGD-VGMAEL 247 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT-THHHHHHHHHHHCTTCCEEECCSSBCHH-HHHHHH
T ss_pred CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH-HHHHHHHHHHHhCCCccEEeccCCcCCh-HHHHHH
Confidence 8888888887765332 2222111 112378888883334433 10 12245566788888888764322 111111
Q ss_pred ccccccCCCccCCCcceEeEecCCCCcc-----cc-ccccCCCCceEeEccCccchhhhccC----------ccC-----
Q 007656 432 EIVRKRREPFVFRSLHCVRIEQCHKLKD-----VT-FLIFAPNLKSLDLSYCSSMEEVISVG----------KFA----- 490 (594)
Q Consensus 432 ~~~~~~~~~~~~~~L~~L~L~~c~~l~~-----l~-~l~~l~~L~~L~L~~~~~l~~~~~~~----------~~~----- 490 (594)
.. .....+++|+.|++++| .++. ++ .+..+++|++|++++|. +.+..... ...
T Consensus 248 ~~----~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 248 CP----GLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HH----HHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HH----HHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcC
Confidence 00 00013567777777775 4444 23 35556777777777663 32211000 000
Q ss_pred --CCC-----cccCCCccccccceecccccccccccCCCC------ccCCCccEEeecccCCCC-----CCCCCCc-CCc
Q 007656 491 --ETP-----EMMGHISPFENLQSLHLSQLPALKSIYWKP------LPFTHLKEISVGYCRNLK-----KLPLDSN-SAK 551 (594)
Q Consensus 491 --~~~-----~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~------~~l~~L~~L~i~~C~~L~-----~lp~~~~-~~~ 551 (594)
... .++..+..+++|+.|++++| .+....... ...++|+.|++++| .+. .+|.... .++
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~ 399 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHS 399 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCC
Confidence 000 00112334577777777776 344332110 11568888888887 355 3443322 277
Q ss_pred CcceEEEcc
Q 007656 552 ERKFVIRGE 560 (594)
Q Consensus 552 L~~l~I~~~ 560 (594)
|+++++++|
T Consensus 400 L~~L~l~~N 408 (461)
T 1z7x_W 400 LRELDLSNN 408 (461)
T ss_dssp CCEEECCSS
T ss_pred ccEEECCCC
Confidence 888888876
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=1.6e-17 Score=167.27 Aligned_cols=243 Identities=16% Similarity=0.134 Sum_probs=174.3
Q ss_pred CcccEEEccCCcCcccccCchHHhh--hhcCcEEEccCCcccccchhhhccCcCcEEecCCCCCCCC--cchhhhcCCCC
Q 007656 245 PSLKVLKMSNCWNFTLKLPLAMSEL--GSSLELLDISYASITELPEELKLLVNLKCLNLRWTDTLNK--IPRQLISILSW 320 (594)
Q Consensus 245 ~~L~~L~L~~~~~l~~~lp~~i~~l--~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~--lp~~~~~~L~~ 320 (594)
..++.++++++ .+ . |..+..+ . +++.|++++|.+...+..+.++++|++|++++| .+.. +|. .+..+++
T Consensus 47 ~~~~~l~l~~~-~~-~--~~~~~~~~~~-~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~-~~~~~~~ 119 (336)
T 2ast_B 47 SLWQTLDLTGK-NL-H--PDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNS-VIEVSTLHG-ILSQCSK 119 (336)
T ss_dssp TTSSEEECTTC-BC-C--HHHHHHHHHT-TCSEEECTTCEECSCCCSCCCCBCCCEEECTTC-EECHHHHHH-HHTTBCC
T ss_pred hhheeeccccc-cC-C--HHHHHhhhhc-cceEEEcCCccccccchhhccCCCCCEEEccCC-CcCHHHHHH-HHhhCCC
Confidence 35889999998 77 3 6667777 7 999999999998888777888999999999999 4654 555 4889999
Q ss_pred CcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcCchhhhcceeEEEEeCCCcccc
Q 007656 321 LRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLHLTGDTASI 400 (594)
Q Consensus 321 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 400 (594)
|++|++++|.+.. ..+..+..+++|+.|+++.+. .+.. .
T Consensus 120 L~~L~L~~~~l~~---------------~~~~~l~~~~~L~~L~L~~~~-------------------------~l~~-~ 158 (336)
T 2ast_B 120 LQNLSLEGLRLSD---------------PIVNTLAKNSNLVRLNLSGCS-------------------------GFSE-F 158 (336)
T ss_dssp CSEEECTTCBCCH---------------HHHHHHTTCTTCSEEECTTCB-------------------------SCCH-H
T ss_pred CCEEeCcCcccCH---------------HHHHHHhcCCCCCEEECCCCC-------------------------CCCH-H
Confidence 9999999987653 356677788888888777542 1111 0
Q ss_pred cccccccCccCCceEEecccCCceee-eecccccccccCCCccCC-CcceEeEecCC-CCc--ccc-ccccCCCCceEeE
Q 007656 401 IDATVFADLNQLNQLWIDEGIELEEL-KIDYTEIVRKRREPFVFR-SLHCVRIEQCH-KLK--DVT-FLIFAPNLKSLDL 474 (594)
Q Consensus 401 ~~~~~l~~~~~L~~L~l~~~~~~~~l-~~~~~~~~~~~~~~~~~~-~L~~L~L~~c~-~l~--~l~-~l~~l~~L~~L~L 474 (594)
.....+..+++|++|++++|..+... .+..+ ..++ +|++|++++|. .++ .++ .+..+++|++|++
T Consensus 159 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~---------~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 159 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV---------AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH---------HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH---------HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 01114566789999999998444421 12333 3688 99999999985 443 344 5778999999999
Q ss_pred ccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCC-CCccCCCccEEeecccCCCCCCCCCCcC---C
Q 007656 475 SYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYW-KPLPFTHLKEISVGYCRNLKKLPLDSNS---A 550 (594)
Q Consensus 475 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~-~~~~l~~L~~L~i~~C~~L~~lp~~~~~---~ 550 (594)
++|..++.... ..+..+++|+.|++++|..+..... ....+++|+.|++++| ++..... .
T Consensus 230 ~~~~~l~~~~~-----------~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~ 293 (336)
T 2ast_B 230 SDSVMLKNDCF-----------QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKE 293 (336)
T ss_dssp TTCTTCCGGGG-----------GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHH
T ss_pred CCCCcCCHHHH-----------HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHh
Confidence 99975543211 2567889999999999974443222 2346999999999998 4433222 4
Q ss_pred cCcceEEEcc
Q 007656 551 KERKFVIRGE 560 (594)
Q Consensus 551 ~L~~l~I~~~ 560 (594)
++..+++.++
T Consensus 294 ~l~~L~l~~n 303 (336)
T 2ast_B 294 ALPHLQINCS 303 (336)
T ss_dssp HSTTSEESCC
T ss_pred hCcceEEecc
Confidence 5778887644
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.69 E-value=1e-17 Score=172.00 Aligned_cols=243 Identities=15% Similarity=0.087 Sum_probs=119.2
Q ss_pred ccccccCchhhcCCCcccEEEccCCcCcccc----cCchHHhhhhcCcEEEccCCccc----ccchhh-------hccCc
Q 007656 231 NSLQRITDGFFQLMPSLKVLKMSNCWNFTLK----LPLAMSELGSSLELLDISYASIT----ELPEEL-------KLLVN 295 (594)
Q Consensus 231 ~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~----lp~~i~~l~~~L~~L~ls~~~l~----~lp~~i-------~~L~~ 295 (594)
..+..++.. +..+++|++|++++| .++.. ++..+..++ +|++|++++|.+. .+|..+ ..+++
T Consensus 19 ~~~~~l~~~-l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~-~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 19 EDEKSVFAV-LLEDDSVKEIVLSGN-TIGTEAARWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp HHHHTTSHH-HHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCT-TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHH-HhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCC-CccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence 334444443 555666666666666 55222 122233555 6666666665433 223322 45666
Q ss_pred CcEEecCCCCCCCC-----cchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCC---------CCCc
Q 007656 296 LKCLNLRWTDTLNK-----IPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGL---------KYLE 361 (594)
Q Consensus 296 L~~L~L~~~~~l~~-----lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L---------~~L~ 361 (594)
|++|++++| .+.. +|.. +..+++|++|++++|.+..... ......+..+ ++|+
T Consensus 96 L~~L~Ls~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~~-----------~~l~~~l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 96 LHTVRLSDN-AFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQAG-----------AKIARALQELAVNKKAKNAPPLR 162 (386)
T ss_dssp CCEEECCSC-CCCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHHHH-----------HHHHHHHHHHHHHHHHHTCCCCC
T ss_pred ccEEECCCC-cCCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHHHH-----------HHHHHHHHHHhhhhhcccCCCCc
Confidence 666666666 4444 4443 5566666666666665532100 0112223333 5666
Q ss_pred EEEEEEcchh--hHHHHhcCchhhhcceeEEEEeCCCccccc---ccc-cccCccCCceEEecccCCc----eeeeeccc
Q 007656 362 VLELTLGSYH--ALQILLSSNKLKSCIRSLYLHLTGDTASII---DAT-VFADLNQLNQLWIDEGIEL----EELKIDYT 431 (594)
Q Consensus 362 ~L~l~~~~~~--~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~---~~~-~l~~~~~L~~L~l~~~~~~----~~l~~~~~ 431 (594)
.|+++.|... .+..+......+++|+.|+++.+.+.. .. ... .+..+++|+.|+|++|... ..+ +..+
T Consensus 163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~-~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l-~~~l 240 (386)
T 2ca6_A 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP-EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL-AIAL 240 (386)
T ss_dssp EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCH-HHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH-HHHG
T ss_pred EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCH-hHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH-HHHH
Confidence 6666555442 333222222233355555553333331 00 111 4556667777777766542 111 2222
Q ss_pred ccccccCCCccCCCcceEeEecCCCCccc-----c-cc--ccCCCCceEeEccCccch----hhhccCccCCCCcccCCC
Q 007656 432 EIVRKRREPFVFRSLHCVRIEQCHKLKDV-----T-FL--IFAPNLKSLDLSYCSSME----EVISVGKFAETPEMMGHI 499 (594)
Q Consensus 432 ~~~~~~~~~~~~~~L~~L~L~~c~~l~~l-----~-~l--~~l~~L~~L~L~~~~~l~----~~~~~~~~~~~~~~~~~~ 499 (594)
..+++|+.|+|++|. ++.. + .+ +.+++|++|+|++|.... .++. .+
T Consensus 241 ---------~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~------------~l 298 (386)
T 2ca6_A 241 ---------KSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT------------VI 298 (386)
T ss_dssp ---------GGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH------------HH
T ss_pred ---------ccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH------------HH
Confidence 246667777777653 4332 2 23 336777777777763322 1332 23
Q ss_pred -ccccccceeccccc
Q 007656 500 -SPFENLQSLHLSQL 513 (594)
Q Consensus 500 -~~l~~L~~L~L~~~ 513 (594)
..+|+|+.|++++|
T Consensus 299 ~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 299 DEKMPDLLFLELNGN 313 (386)
T ss_dssp HHHCTTCCEEECTTS
T ss_pred HhcCCCceEEEccCC
Confidence 34677777777766
No 87
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=5.3e-17 Score=176.59 Aligned_cols=284 Identities=16% Similarity=0.116 Sum_probs=189.6
Q ss_pred CCCCcccccccccccccccCc----hhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCC------------
Q 007656 218 TCPHLHTLFLASNNSLQRITD----GFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYA------------ 281 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~----~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~------------ 281 (594)
.+++|+.|++ .++.+..+.. ..+.++++|++|++++| .+ ..+|..+..+. +|++|+++.+
T Consensus 190 ~~~~L~~L~L-~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~-~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 190 HNTSLEVLNF-YMTEFAKISPKDLETIARNCRSLVSVKVGDF-EI-LELVGFFKAAA-NLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HCCCCCEEEC-TTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BG-GGGHHHHHHCT-TCCEEEECBCCCCTTCTTSSSC
T ss_pred cCCCccEEEe-eccCCCccCHHHHHHHHhhCCCCcEEeccCc-cH-HHHHHHHhhhh-HHHhhcccccccccchHHHHHH
Confidence 5789999999 6665653322 22567899999999999 88 77887788877 8888887632
Q ss_pred ---------------cccccchhhhccCcCcEEecCCCCCCCCcc-hhhhcCCCCCcEEEecCCCCCccccCCCCccccC
Q 007656 282 ---------------SITELPEELKLLVNLKCLNLRWTDTLNKIP-RQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFG 345 (594)
Q Consensus 282 ---------------~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 345 (594)
....+|..+..+++|++|++++|. +.... ...+..+++|++|++.++ +..
T Consensus 266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~~~------------ 331 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNV-IGD------------ 331 (592)
T ss_dssp CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHH------------
T ss_pred hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCc-cCH------------
Confidence 234566677889999999999994 44322 133689999999999833 221
Q ss_pred CcccchHHhcCCCCCcEEEEEE-----------cchhhHHHHhcCchhhhcceeEEEEeCCCccccccccccc-CccCCc
Q 007656 346 GGEVLIQELLGLKYLEVLELTL-----------GSYHALQILLSSNKLKSCIRSLYLHLTGDTASIIDATVFA-DLNQLN 413 (594)
Q Consensus 346 ~~~~~~~~l~~L~~L~~L~l~~-----------~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~-~~~~L~ 413 (594)
........++++|+.|+++. +.... ..+......+++|+.|.++++.+.. . ....+. .+++|+
T Consensus 332 --~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~l~~-~-~~~~l~~~~~~L~ 406 (592)
T 3ogk_B 332 --RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ-RGLIALAQGCQELEYMAVYVSDITN-E-SLESIGTYLKNLC 406 (592)
T ss_dssp --HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH-HHHHHHHHHCTTCSEEEEEESCCCH-H-HHHHHHHHCCSCC
T ss_pred --HHHHHHHHhCCCCCEEEeecCccccccccccCccCH-HHHHHHHhhCccCeEEEeecCCccH-H-HHHHHHhhCCCCc
Confidence 22344457789999999993 23221 1222222345699999998888776 3 222333 488999
Q ss_pred eEEecc---cCCceeeeec-ccccccccCCCccCCCcceEeEecCCC-Ccc--cccc-ccCCCCceEeEccCccchhh-h
Q 007656 414 QLWIDE---GIELEELKID-YTEIVRKRREPFVFRSLHCVRIEQCHK-LKD--VTFL-IFAPNLKSLDLSYCSSMEEV-I 484 (594)
Q Consensus 414 ~L~l~~---~~~~~~l~~~-~~~~~~~~~~~~~~~~L~~L~L~~c~~-l~~--l~~l-~~l~~L~~L~L~~~~~l~~~-~ 484 (594)
+|++++ |+.++..+.+ .+. .....+++|+.|+++.|.+ +++ +..+ ..+++|++|+|++|. +++. .
T Consensus 407 ~L~l~~~~~~n~l~~~p~~~~~~-----~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~ 480 (592)
T 3ogk_B 407 DFRLVLLDREERITDLPLDNGVR-----SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGL 480 (592)
T ss_dssp EEEEEECSCCSCCSSCCCHHHHH-----HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHH
T ss_pred EEEEeecCCCccccCchHHHHHH-----HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHH
Confidence 999985 4454432111 010 0013589999999987654 333 2233 358999999999985 4332 1
Q ss_pred ccCccCCCCcccCCCccccccceecccccccccc--cCCCCccCCCccEEeecccCCCCCC
Q 007656 485 SVGKFAETPEMMGHISPFENLQSLHLSQLPALKS--IYWKPLPFTHLKEISVGYCRNLKKL 543 (594)
Q Consensus 485 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~--l~~~~~~l~~L~~L~i~~C~~L~~l 543 (594)
. ..+..+++|+.|+|++|+ +.. ++.....+++|+.|++++|. +..-
T Consensus 481 ~-----------~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 481 M-----------EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp H-----------HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred H-----------HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence 1 134678999999999996 543 22222368999999999997 6654
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.66 E-value=4.3e-17 Score=167.32 Aligned_cols=239 Identities=15% Similarity=0.086 Sum_probs=169.9
Q ss_pred CCCCcccccccccccccccCchh----hcCCCcccEEEccCCcCc---ccccCchH-------HhhhhcCcEEEccCCcc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGF----FQLMPSLKVLKMSNCWNF---TLKLPLAM-------SELGSSLELLDISYASI 283 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~----~~~l~~L~~L~L~~~~~l---~~~lp~~i-------~~l~~~L~~L~ls~~~l 283 (594)
.+++|++|+| +++.+....... +..+++|++|+|++| .+ ++.+|..+ ..+. +|++|++++|.+
T Consensus 30 ~~~~L~~L~L-~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l 106 (386)
T 2ca6_A 30 EDDSVKEIVL-SGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCP-KLHTVRLSDNAF 106 (386)
T ss_dssp HCSCCCEEEC-TTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCT-TCCEEECCSCCC
T ss_pred cCCCccEEEC-CCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCC-cccEEECCCCcC
Confidence 5789999999 566665543322 678999999999997 54 22445555 5777 999999999998
Q ss_pred cc-----cchhhhccCcCcEEecCCCCCCCCcchhh----hcCC---------CCCcEEEecCCCCCccccCCCCccccC
Q 007656 284 TE-----LPEELKLLVNLKCLNLRWTDTLNKIPRQL----ISIL---------SWLRVLRMLGTGWFNFLEAPEDSVLFG 345 (594)
Q Consensus 284 ~~-----lp~~i~~L~~L~~L~L~~~~~l~~lp~~~----~~~L---------~~L~~L~l~~~~~~~~~~~~~~~~~~~ 345 (594)
+. +|..+.++++|++|++++| .++..+... +..+ ++|++|++++|.+....
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~---------- 175 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS---------- 175 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG----------
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH----------
Confidence 86 7888999999999999999 565332211 3334 89999999999886311
Q ss_pred CcccchHHhcCCCCCcEEEEEEcchh--hHHHHhc-CchhhhcceeEEEEeCCCccc--ccccccccCccCCceEEeccc
Q 007656 346 GGEVLIQELLGLKYLEVLELTLGSYH--ALQILLS-SNKLKSCIRSLYLHLTGDTAS--IIDATVFADLNQLNQLWIDEG 420 (594)
Q Consensus 346 ~~~~~~~~l~~L~~L~~L~l~~~~~~--~~~~~~~-~~~~~~~L~~L~L~~~~~~~~--~~~~~~l~~~~~L~~L~l~~~ 420 (594)
.......+..+++|+.|+++.|.+. ++..+.. ....+++|+.|+|+.+.+... ......+..+++|+.|+|++|
T Consensus 176 -~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 176 -MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254 (386)
T ss_dssp -HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred -HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence 1112357888999999999988765 3333333 445567999999966666420 002236788899999999998
Q ss_pred CCceee---eecccccccccCCCccCCCcceEeEecCCCCcc-----cc-cc-ccCCCCceEeEccCcc
Q 007656 421 IELEEL---KIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKD-----VT-FL-IFAPNLKSLDLSYCSS 479 (594)
Q Consensus 421 ~~~~~l---~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~-----l~-~l-~~l~~L~~L~L~~~~~ 479 (594)
.....- .+..+. ...+++|+.|+|++|. ++. +| .+ .++++|++|++++|..
T Consensus 255 ~i~~~~~~~l~~~l~-------~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 255 LLSARGAAAVVDAFS-------KLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp CCCHHHHHHHHHHHH-------TCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred CCchhhHHHHHHHHh-------hccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 654310 112221 0138999999999964 555 66 44 6789999999999954
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=3.5e-16 Score=153.70 Aligned_cols=170 Identities=21% Similarity=0.215 Sum_probs=110.2
Q ss_pred hcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCcEEecCCCCCCCCcchhhhcCCCC
Q 007656 241 FQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLKCLNLRWTDTLNKIPRQLISILSW 320 (594)
Q Consensus 241 ~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~ 320 (594)
+..+++|++|++++| .+ ..+|. +..+. +|++|++++|.++.++. +.++++|++|++++| .+..+|. +..+++
T Consensus 42 ~~~l~~L~~L~l~~~-~i-~~~~~-~~~l~-~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~ 113 (291)
T 1h6t_A 42 QNELNSIDQIIANNS-DI-KSVQG-IQYLP-NVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS--LKDLKK 113 (291)
T ss_dssp HHHHHTCCEEECTTS-CC-CCCTT-GGGCT-TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG--GTTCTT
T ss_pred hhhcCcccEEEccCC-Cc-ccChh-HhcCC-CCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh--hccCCC
Confidence 345667777777777 77 66653 66666 77777777777777765 777777777777777 5666665 777777
Q ss_pred CcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcCchhhhcceeEEEEeCCCcccc
Q 007656 321 LRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLHLTGDTASI 400 (594)
Q Consensus 321 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 400 (594)
|++|++++|.+.. +..+..+++|+.|+++.|.. .. +
T Consensus 114 L~~L~L~~n~i~~-----------------~~~l~~l~~L~~L~l~~n~l--------------------------~~-~ 149 (291)
T 1h6t_A 114 LKSLSLEHNGISD-----------------INGLVHLPQLESLYLGNNKI--------------------------TD-I 149 (291)
T ss_dssp CCEEECTTSCCCC-----------------CGGGGGCTTCCEEECCSSCC--------------------------CC-C
T ss_pred CCEEECCCCcCCC-----------------ChhhcCCCCCCEEEccCCcC--------------------------Cc-c
Confidence 7777777776543 12355555555555553322 11 1
Q ss_pred cccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCccccccccCCCCceEeEccCc
Q 007656 401 IDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDVTFLIFAPNLKSLDLSYCS 478 (594)
Q Consensus 401 ~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~ 478 (594)
..+..+++|+.|++++|.... +.+ + ..+++|+.|++++| .++.++.+..+++|+.|++++|+
T Consensus 150 ---~~l~~l~~L~~L~L~~N~l~~-~~~--l---------~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 150 ---TVLSRLTKLDTLSLEDNQISD-IVP--L---------AGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp ---GGGGGCTTCSEEECCSSCCCC-CGG--G---------TTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred ---hhhccCCCCCEEEccCCcccc-chh--h---------cCCCccCEEECCCC-cCCCChhhccCCCCCEEECcCCc
Confidence 245566777777777764433 222 2 25777888888774 56677777778888888887773
No 90
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.65 E-value=3.6e-17 Score=177.95 Aligned_cols=299 Identities=15% Similarity=0.066 Sum_probs=154.9
Q ss_pred CCCCcccccccccccccccCchh----hcCCCcccEEEccCCcC--cc-cccCchHHhhhhcCcEEEccCC-cccccchh
Q 007656 218 TCPHLHTLFLASNNSLQRITDGF----FQLMPSLKVLKMSNCWN--FT-LKLPLAMSELGSSLELLDISYA-SITELPEE 289 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~----~~~l~~L~~L~L~~~~~--l~-~~lp~~i~~l~~~L~~L~ls~~-~l~~lp~~ 289 (594)
.|++|++|++++| .++...... ...+++|++|++++| . ++ ..++..+..++ +|++|++++| .++.+|..
T Consensus 154 ~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~~l~~l~~~~~-~L~~L~L~~~~~~~~l~~~ 230 (594)
T 2p1m_B 154 TCRNLKELDLRES-DVDDVSGHWLSHFPDTYTSLVSLNISCL-ASEVSFSALERLVTRCP-NLKSLKLNRAVPLEKLATL 230 (594)
T ss_dssp HCTTCCEEECTTC-EEECCCGGGGGGSCTTCCCCCEEECTTC-CSCCCHHHHHHHHHHCT-TCCEEECCTTSCHHHHHHH
T ss_pred hCCCCCEEeCcCC-ccCCcchHHHHHHhhcCCcCcEEEeccc-CCcCCHHHHHHHHHhCC-CCcEEecCCCCcHHHHHHH
Confidence 5778888888443 354433222 235668888888877 3 21 11222233446 8888888877 66666666
Q ss_pred hhccCcCcEEecCCCC-------------------CC-----------CCcchhhhcCCCCCcEEEecCCCCCccccCCC
Q 007656 290 LKLLVNLKCLNLRWTD-------------------TL-----------NKIPRQLISILSWLRVLRMLGTGWFNFLEAPE 339 (594)
Q Consensus 290 i~~L~~L~~L~L~~~~-------------------~l-----------~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~ 339 (594)
+.++++|++|+++.+. .+ ..+|. .+..+++|++|++++|.+..
T Consensus 231 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~l~~------ 303 (594)
T 2p1m_B 231 LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA-VYSVCSRLTTLNLSYATVQS------ 303 (594)
T ss_dssp HHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG-GHHHHTTCCEEECTTCCCCH------
T ss_pred HhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH-HHHhhCCCCEEEccCCCCCH------
Confidence 7777777777654431 11 11222 13356778888888777432
Q ss_pred CccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcCchhhhcceeEEE-Ee--------CCCcccccccccccCcc
Q 007656 340 DSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYL-HL--------TGDTASIIDATVFADLN 410 (594)
Q Consensus 340 ~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L-~~--------~~~~~~~~~~~~l~~~~ 410 (594)
......+.++++|+.|++..+ .. ...+......+++|+.|++ .| +.... .........++
T Consensus 304 --------~~l~~~~~~~~~L~~L~l~~~-~~-~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~-~~l~~l~~~~~ 372 (594)
T 2p1m_B 304 --------YDLVKLLCQCPKLQRLWVLDY-IE-DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE-QGLVSVSMGCP 372 (594)
T ss_dssp --------HHHHHHHTTCTTCCEEEEEGG-GH-HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH-HHHHHHHHHCT
T ss_pred --------HHHHHHHhcCCCcCEEeCcCc-cC-HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH-HHHHHHHHhch
Confidence 123333567788888888755 21 1222222223457777777 32 22222 10111123467
Q ss_pred CCceEEecccCCceeeeecccccccccCCCccCCCcceEeEe-----cCCCCcccc-------ccccCCCCceEeEccCc
Q 007656 411 QLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIE-----QCHKLKDVT-------FLIFAPNLKSLDLSYCS 478 (594)
Q Consensus 411 ~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~-----~c~~l~~l~-------~l~~l~~L~~L~L~~~~ 478 (594)
+|+.|.++. +.+....+..+. ..+++|+.|+++ +|+.++..| .+..+++|++|+|+++
T Consensus 373 ~L~~L~~~~-~~l~~~~~~~l~--------~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~- 442 (594)
T 2p1m_B 373 KLESVLYFC-RQMTNAALITIA--------RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL- 442 (594)
T ss_dssp TCCEEEEEE-SCCCHHHHHHHH--------HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSS-
T ss_pred hHHHHHHhc-CCcCHHHHHHHH--------hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCc-
Confidence 777775543 333322222222 246777777777 455666433 1456677777777552
Q ss_pred cchhhhccCccCCCCcccCCCc-cccccceecccccccccccCCC--CccCCCccEEeecccCCCCC--CC-CCCcCCcC
Q 007656 479 SMEEVISVGKFAETPEMMGHIS-PFENLQSLHLSQLPALKSIYWK--PLPFTHLKEISVGYCRNLKK--LP-LDSNSAKE 552 (594)
Q Consensus 479 ~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~L~~l~~~--~~~l~~L~~L~i~~C~~L~~--lp-~~~~~~~L 552 (594)
+.+... ..+. .+++|+.|+|++|. +...... ...+++|+.|++++|+. .. +. .....++|
T Consensus 443 -l~~~~~-----------~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L 508 (594)
T 2p1m_B 443 -LTDKVF-----------EYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETM 508 (594)
T ss_dssp -CCHHHH-----------HHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGS
T ss_pred -ccHHHH-----------HHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCC
Confidence 222110 0122 25667777776663 3221111 02356677777776654 22 11 11112566
Q ss_pred cceEEEccH
Q 007656 553 RKFVIRGEE 561 (594)
Q Consensus 553 ~~l~I~~~~ 561 (594)
+.+++++|+
T Consensus 509 ~~L~l~~~~ 517 (594)
T 2p1m_B 509 RSLWMSSCS 517 (594)
T ss_dssp SEEEEESSC
T ss_pred CEEeeeCCC
Confidence 667776663
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=6.2e-17 Score=160.82 Aligned_cols=206 Identities=15% Similarity=0.062 Sum_probs=116.1
Q ss_pred CCCcccEEEccCCcCcccccCchH--HhhhhcCcEEEccCCccccc----c-hhhhccCcCcEEecCCCCCCCCcchhhh
Q 007656 243 LMPSLKVLKMSNCWNFTLKLPLAM--SELGSSLELLDISYASITEL----P-EELKLLVNLKCLNLRWTDTLNKIPRQLI 315 (594)
Q Consensus 243 ~l~~L~~L~L~~~~~l~~~lp~~i--~~l~~~L~~L~ls~~~l~~l----p-~~i~~L~~L~~L~L~~~~~l~~lp~~~~ 315 (594)
.+++|++|++++| .+++..|..+ ..+. +|++|++++|.++.. + ..+..+++|++|++++| .+..++...+
T Consensus 89 ~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~ 165 (310)
T 4glp_A 89 AYSRLKELTLEDL-KITGTMPPLPLEATGL-ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQV 165 (310)
T ss_dssp HHSCCCEEEEESC-CCBSCCCCCSSSCCCB-CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSC
T ss_pred ccCceeEEEeeCC-EeccchhhhhhhccCC-CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHh
Confidence 3456888888888 7734556666 6777 888888888877642 2 24456778888888887 5666665557
Q ss_pred cCCCCCcEEEecCCCCCccccCCCCccccCCcccc--hHHhcCCCCCcEEEEEEcchhhHHHHhcCchhhhcceeEEEEe
Q 007656 316 SILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVL--IQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLHL 393 (594)
Q Consensus 316 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 393 (594)
+.+++|++|++++|.+... ... ...+..+++|+.|+++.|....+......
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~-------------~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-------------- 218 (310)
T 4glp_A 166 RAFPALTSLDLSDNPGLGE-------------RGLMAALCPHKFPAIQNLALRNTGMETPTGVCAA-------------- 218 (310)
T ss_dssp CCCTTCCEEECCSCTTCHH-------------HHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHH--------------
T ss_pred ccCCCCCEEECCCCCCccc-------------hhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHH--------------
Confidence 7788888888887775430 000 01124566677666666554433222110
Q ss_pred CCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCccccc-cccCCCCceE
Q 007656 394 TGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDVTF-LIFAPNLKSL 472 (594)
Q Consensus 394 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L 472 (594)
.+..+++|++|++++|...... |..+.. ...+++|+.|++++| .++.+|. + .++|++|
T Consensus 219 -----------l~~~l~~L~~L~Ls~N~l~~~~-p~~~~~------~~~~~~L~~L~Ls~N-~l~~lp~~~--~~~L~~L 277 (310)
T 4glp_A 219 -----------LAAAGVQPHSLDLSHNSLRATV-NPSAPR------CMWSSALNSLNLSFA-GLEQVPKGL--PAKLRVL 277 (310)
T ss_dssp -----------HHHHTCCCSSEECTTSCCCCCC-CSCCSS------CCCCTTCCCEECCSS-CCCSCCSCC--CSCCSCE
T ss_pred -----------HHhcCCCCCEEECCCCCCCccc-hhhHHh------ccCcCcCCEEECCCC-CCCchhhhh--cCCCCEE
Confidence 1244456666666665443321 222110 011256666666663 4445542 2 2566666
Q ss_pred eEccCccchhhhccCccCCCCcccCCCccccccceeccccc
Q 007656 473 DLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQL 513 (594)
Q Consensus 473 ~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 513 (594)
+|++| .++.++ ....+++|+.|+|+++
T Consensus 278 ~Ls~N-~l~~~~-------------~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 278 DLSSN-RLNRAP-------------QPDELPEVDNLTLDGN 304 (310)
T ss_dssp ECCSC-CCCSCC-------------CTTSCCCCSCEECSST
T ss_pred ECCCC-cCCCCc-------------hhhhCCCccEEECcCC
Confidence 66666 333331 2345566666666665
No 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.63 E-value=7.9e-16 Score=165.74 Aligned_cols=82 Identities=18% Similarity=0.220 Sum_probs=39.9
Q ss_pred cCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCcEEecCCCCCCCCcchhhhcCCCCC
Q 007656 242 QLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLKCLNLRWTDTLNKIPRQLISILSWL 321 (594)
Q Consensus 242 ~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L 321 (594)
..+++|+.|++++| .+ ..+| .+..+. +|++|+|++|.+..+|. +..+++|+.|+|++| .+..+|. +..+++|
T Consensus 40 ~~L~~L~~L~l~~n-~i-~~l~-~l~~l~-~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L 111 (605)
T 1m9s_A 40 NELNSIDQIIANNS-DI-KSVQ-GIQYLP-NVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLSS--LKDLKKL 111 (605)
T ss_dssp HHHTTCCCCBCTTC-CC-CCCT-TGGGCT-TCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCTT--STTCTTC
T ss_pred hcCCCCCEEECcCC-CC-CCCh-HHccCC-CCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCChh--hccCCCC
Confidence 34444555555555 44 4443 244444 55555555555554443 445555555555555 4444442 4455555
Q ss_pred cEEEecCCCC
Q 007656 322 RVLRMLGTGW 331 (594)
Q Consensus 322 ~~L~l~~~~~ 331 (594)
++|++++|.+
T Consensus 112 ~~L~Ls~N~l 121 (605)
T 1m9s_A 112 KSLSLEHNGI 121 (605)
T ss_dssp CEEECTTSCC
T ss_pred CEEEecCCCC
Confidence 5555555444
No 93
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.62 E-value=2.6e-15 Score=123.45 Aligned_cols=82 Identities=9% Similarity=0.116 Sum_probs=72.5
Q ss_pred ccchhhhhhHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchhhHHHHHHHHHHHHHHHHH
Q 007656 8 TCDGALFNRCLDCFLGKAAYIRNLQDNLDALETELGNLIAKKNDVMRRVVDAERQQ-MRRLDGVQVWVSRVDAFKTGADE 86 (594)
Q Consensus 8 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~-~~~~~~v~~Wl~~~~~~~y~aed 86 (594)
+++.+ ++||.+++.+|+.++.+|++++++|+++|+.|+++|.+ |+.+. ...++.++.|+++||+++|||||
T Consensus 2 ~v~~l-l~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~ED 73 (115)
T 3qfl_A 2 AISNL-IPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIED 73 (115)
T ss_dssp TTCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 45566 89999999999999999999999999999999999987 76652 22468999999999999999999
Q ss_pred HHhhhhhhccc
Q 007656 87 LITDGSEEIGK 97 (594)
Q Consensus 87 ~ld~~~~~~~~ 97 (594)
++|+|.+++..
T Consensus 74 ~iD~f~~~~~~ 84 (115)
T 3qfl_A 74 VVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 99999998753
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.61 E-value=1.4e-15 Score=154.46 Aligned_cols=236 Identities=14% Similarity=0.102 Sum_probs=131.5
Q ss_pred CCcccccccccccccccCc----hhhcCCC-cccEEEccCCcCccccc-CchHHhh-----hhcCcEEEccCCcccccch
Q 007656 220 PHLHTLFLASNNSLQRITD----GFFQLMP-SLKVLKMSNCWNFTLKL-PLAMSEL-----GSSLELLDISYASITELPE 288 (594)
Q Consensus 220 ~~L~~L~L~~~~~l~~l~~----~~~~~l~-~L~~L~L~~~~~l~~~l-p~~i~~l-----~~~L~~L~ls~~~l~~lp~ 288 (594)
++|++|++ +++.++..+. ..|..++ +|++|++++| .+ +.. +..+..+ . +|++|++++|.++..+.
T Consensus 22 ~~L~~L~L-s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l-~~~~~~~l~~~l~~~~~-~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 22 HGVTSLDL-SLNNLYSISTVELIQAFANTPASVTSLNLSGN-SL-GFKNSDELVQILAAIPA-NVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp TTCCEEEC-TTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CG-GGSCHHHHHHHHHTSCT-TCCEEECCSSCGGGSCH
T ss_pred CCceEEEc-cCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CC-CHHHHHHHHHHHhccCC-CccEEECcCCcCChHHH
Confidence 44777777 5555766665 4566777 7777777777 77 443 5556555 5 77777777777765543
Q ss_pred -h----hhcc-CcCcEEecCCCCCCCCcchhhh----cC-CCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCC
Q 007656 289 -E----LKLL-VNLKCLNLRWTDTLNKIPRQLI----SI-LSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGL 357 (594)
Q Consensus 289 -~----i~~L-~~L~~L~L~~~~~l~~lp~~~~----~~-L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 357 (594)
. +..+ ++|++|++++| .++..+...+ .. .++|++|++++|.+.... .......+..+
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-----------~~~l~~~l~~~ 165 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS-----------SDELIQILAAI 165 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC-----------HHHHHHHHHTS
T ss_pred HHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH-----------HHHHHHHHhcC
Confidence 2 3344 67777777777 5665554322 23 257777777777665311 11233344444
Q ss_pred C-CCcEEEEEEcchhhHHHHhcCchhhhcceeEEEEeCCCcccccccccccCc-cCCceEEecccCCceeeeeccccccc
Q 007656 358 K-YLEVLELTLGSYHALQILLSSNKLKSCIRSLYLHLTGDTASIIDATVFADL-NQLNQLWIDEGIELEELKIDYTEIVR 435 (594)
Q Consensus 358 ~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~l~~~~~~~~~ 435 (594)
+ +|+.|+++.|........ .....+... ++|+.|++++|..... ....+.
T Consensus 166 ~~~L~~L~Ls~n~l~~~~~~------------------------~l~~~l~~~~~~L~~L~Ls~N~i~~~-~~~~l~--- 217 (362)
T 3goz_A 166 PANVNSLNLRGNNLASKNCA------------------------ELAKFLASIPASVTSLDLSANLLGLK-SYAELA--- 217 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHH------------------------HHHHHHHTSCTTCCEEECTTSCGGGS-CHHHHH---
T ss_pred CccccEeeecCCCCchhhHH------------------------HHHHHHHhCCCCCCEEECCCCCCChh-HHHHHH---
Confidence 4 666666665543221100 000123334 4777777777653321 111110
Q ss_pred ccCCC-ccCCCcceEeEecCCCCcccc------ccccCCCCceEeEccCc---c----chhhhccCccCCCCcccCCCcc
Q 007656 436 KRREP-FVFRSLHCVRIEQCHKLKDVT------FLIFAPNLKSLDLSYCS---S----MEEVISVGKFAETPEMMGHISP 501 (594)
Q Consensus 436 ~~~~~-~~~~~L~~L~L~~c~~l~~l~------~l~~l~~L~~L~L~~~~---~----l~~~~~~~~~~~~~~~~~~~~~ 501 (594)
... ...++|+.|+|++| .++..+ .+..+++|++|+|++|. . +..+. ..+..
T Consensus 218 --~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~------------~~~~~ 282 (362)
T 3goz_A 218 --YIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG------------AAFPN 282 (362)
T ss_dssp --HHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHH------------TTSTT
T ss_pred --HHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHH------------HHhcc
Confidence 000 12357888888774 454432 24567778888888774 0 22222 24556
Q ss_pred ccccceecccccc
Q 007656 502 FENLQSLHLSQLP 514 (594)
Q Consensus 502 l~~L~~L~L~~~~ 514 (594)
+++|+.|++++++
T Consensus 283 l~~L~~LdL~~N~ 295 (362)
T 3goz_A 283 IQKIILVDKNGKE 295 (362)
T ss_dssp CCEEEEECTTSCB
T ss_pred CCceEEEecCCCc
Confidence 7777778887763
No 95
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.60 E-value=2.4e-16 Score=171.47 Aligned_cols=279 Identities=15% Similarity=0.112 Sum_probs=180.7
Q ss_pred CCCCcccccccccccccccCchh----hcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCc-----------
Q 007656 218 TCPHLHTLFLASNNSLQRITDGF----FQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYAS----------- 282 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~----~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~----------- 282 (594)
.+++|+.|+++.+. ..++... +.++++|++|++++|..+ +.+|..+..+. +|++|+++.+.
T Consensus 182 ~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~-~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~l 257 (594)
T 2p1m_B 182 TYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPL-EKLATLLQRAP-QLEELGTGGYTAEVRPDVYSGL 257 (594)
T ss_dssp TCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCH-HHHHHHHHHCT-TCSEEECSBCCCCCCHHHHHHH
T ss_pred cCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcH-HHHHHHHhcCC-cceEcccccccCccchhhHHHH
Confidence 67899999995543 2333222 356799999999998556 66777788888 88888765441
Q ss_pred --------------------ccccchhhhccCcCcEEecCCCCCCCCc-chhhhcCCCCCcEEEecCCCCCccccCCCCc
Q 007656 283 --------------------ITELPEELKLLVNLKCLNLRWTDTLNKI-PRQLISILSWLRVLRMLGTGWFNFLEAPEDS 341 (594)
Q Consensus 283 --------------------l~~lp~~i~~L~~L~~L~L~~~~~l~~l-p~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~ 341 (594)
...+|..+..+++|++|++++|. +... ...++..+++|++|++.+| ...
T Consensus 258 ~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~~-------- 327 (594)
T 2p1m_B 258 SVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IED-------- 327 (594)
T ss_dssp HHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHH--------
T ss_pred HHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cCH--------
Confidence 12344445578999999999994 5432 1223668999999999988 321
Q ss_pred cccCCcccchHHhcCCCCCcEEEEEE---------cch--hhHHHHhcCchhhhcceeEEEEeCCCcccccccccccCcc
Q 007656 342 VLFGGGEVLIQELLGLKYLEVLELTL---------GSY--HALQILLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLN 410 (594)
Q Consensus 342 ~~~~~~~~~~~~l~~L~~L~~L~l~~---------~~~--~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 410 (594)
.........+++|+.|++.. +.. ..+..+. ..+++|+.|.++|+.+.. .........++
T Consensus 328 ------~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~---~~~~~L~~L~~~~~~l~~-~~~~~l~~~~~ 397 (594)
T 2p1m_B 328 ------AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS---MGCPKLESVLYFCRQMTN-AALITIARNRP 397 (594)
T ss_dssp ------HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH---HHCTTCCEEEEEESCCCH-HHHHHHHHHCT
T ss_pred ------HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH---HhchhHHHHHHhcCCcCH-HHHHHHHhhCC
Confidence 12233344689999999943 122 2222222 234689999778888776 31222234579
Q ss_pred CCceEEec-----ccCCceeeeec-ccccccccCCCccCCCcceEeEecCCCCcc--cccccc-CCCCceEeEccCccch
Q 007656 411 QLNQLWID-----EGIELEELKID-YTEIVRKRREPFVFRSLHCVRIEQCHKLKD--VTFLIF-APNLKSLDLSYCSSME 481 (594)
Q Consensus 411 ~L~~L~l~-----~~~~~~~l~~~-~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~--l~~l~~-l~~L~~L~L~~~~~l~ 481 (594)
+|+.|+++ +|+.+...+.+ .+. .....+++|+.|++++ .+++ ++.+.. +++|++|+|++|....
T Consensus 398 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~-----~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~ 470 (594)
T 2p1m_B 398 NMTRFRLCIIEPKAPDYLTLEPLDIGFG-----AIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSD 470 (594)
T ss_dssp TCCEEEEEESSTTCCCTTTCCCTHHHHH-----HHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSH
T ss_pred CcceeEeecccCCCcccccCCchhhHHH-----HHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcH
Confidence 99999999 45555532211 100 0013678999999976 4444 234544 8999999999995322
Q ss_pred hhhccCccCCCCcccCCCccccccceecccccccccccCC--CCccCCCccEEeecccCC
Q 007656 482 EVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYW--KPLPFTHLKEISVGYCRN 539 (594)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~--~~~~l~~L~~L~i~~C~~ 539 (594)
..+. .-...+++|+.|+|++|+. ..... ....+++|+.|++++|+.
T Consensus 471 ~~~~-----------~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 471 LGMH-----------HVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHH-----------HHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHH-----------HHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 2221 0125689999999999964 43222 223589999999999975
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.59 E-value=2.8e-15 Score=147.23 Aligned_cols=167 Identities=18% Similarity=0.262 Sum_probs=131.2
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLK 297 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~ 297 (594)
.+++|+.|++ .++.+..++. +..+++|++|++++| .+ ..++. +..+. +|++|++++|.++.+|. +..+++|+
T Consensus 44 ~l~~L~~L~l-~~~~i~~~~~--~~~l~~L~~L~L~~n-~l-~~~~~-l~~l~-~L~~L~l~~n~l~~~~~-l~~l~~L~ 115 (291)
T 1h6t_A 44 ELNSIDQIIA-NNSDIKSVQG--IQYLPNVTKLFLNGN-KL-TDIKP-LANLK-NLGWLFLDENKVKDLSS-LKDLKKLK 115 (291)
T ss_dssp HHHTCCEEEC-TTSCCCCCTT--GGGCTTCCEEECCSS-CC-CCCGG-GTTCT-TCCEEECCSSCCCCGGG-GTTCTTCC
T ss_pred hcCcccEEEc-cCCCcccChh--HhcCCCCCEEEccCC-cc-CCCcc-cccCC-CCCEEECCCCcCCCChh-hccCCCCC
Confidence 6789999999 7778888865 889999999999999 99 88876 89999 99999999999999874 99999999
Q ss_pred EEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHh
Q 007656 298 CLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILL 377 (594)
Q Consensus 298 ~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 377 (594)
+|++++| .+..++. +..+++|++|++++|.+.. . ..+..+++|+.|+++.|....+.
T Consensus 116 ~L~L~~n-~i~~~~~--l~~l~~L~~L~l~~n~l~~----------------~-~~l~~l~~L~~L~L~~N~l~~~~--- 172 (291)
T 1h6t_A 116 SLSLEHN-GISDING--LVHLPQLESLYLGNNKITD----------------I-TVLSRLTKLDTLSLEDNQISDIV--- 172 (291)
T ss_dssp EEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCC----------------C-GGGGGCTTCSEEECCSSCCCCCG---
T ss_pred EEECCCC-cCCCChh--hcCCCCCCEEEccCCcCCc----------------c-hhhccCCCCCEEEccCCccccch---
Confidence 9999999 7888865 8999999999999998764 1 35777888888877755433211
Q ss_pred cCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecC
Q 007656 378 SSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQC 454 (594)
Q Consensus 378 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 454 (594)
.+..+++|+.|++++|.... + +. + ..+++|+.|++++|
T Consensus 173 ---------------------------~l~~l~~L~~L~L~~N~i~~-l-~~-l---------~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 173 ---------------------------PLAGLTKLQNLYLSKNHISD-L-RA-L---------AGLKNLDVLELFSQ 210 (291)
T ss_dssp ---------------------------GGTTCTTCCEEECCSSCCCB-C-GG-G---------TTCTTCSEEEEEEE
T ss_pred ---------------------------hhcCCCccCEEECCCCcCCC-C-hh-h---------ccCCCCCEEECcCC
Confidence 25566777777777754332 2 11 2 25677777777774
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=1.2e-14 Score=139.63 Aligned_cols=104 Identities=19% Similarity=0.266 Sum_probs=63.6
Q ss_pred CcccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccccch-hhhccCcCcE
Q 007656 221 HLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITELPE-ELKLLVNLKC 298 (594)
Q Consensus 221 ~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L~~ 298 (594)
..+++++ .++.++.+|.. +. +.++.|++++| .+ ..+ |..+..+. +|++|++++|.++.++. .+..+++|++
T Consensus 15 ~~~~l~~-~~~~l~~~p~~-~~--~~l~~L~L~~n-~l-~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 87 (251)
T 3m19_A 15 GKKEVDC-QGKSLDSVPSG-IP--ADTEKLDLQST-GL-ATLSDATFRGLT-KLTWLNLDYNQLQTLSAGVFDDLTELGT 87 (251)
T ss_dssp GGTEEEC-TTCCCSSCCSC-CC--TTCCEEECTTS-CC-CCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCeEEec-CCCCccccCCC-CC--CCCCEEEccCC-Cc-CccCHhHhcCcc-cCCEEECCCCcCCccCHhHhccCCcCCE
Confidence 4555666 55556666654 22 46666666666 66 444 34566666 66666666666666554 3566666666
Q ss_pred EecCCCCCCCCcchhhhcCCCCCcEEEecCCCCC
Q 007656 299 LNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWF 332 (594)
Q Consensus 299 L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~ 332 (594)
|++++| .+..+|...+..+++|++|++++|.+.
T Consensus 88 L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 120 (251)
T 3m19_A 88 LGLANN-QLASLPLGVFDHLTQLDKLYLGGNQLK 120 (251)
T ss_dssp EECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EECCCC-cccccChhHhcccCCCCEEEcCCCcCC
Confidence 666666 566666555666666666666666554
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=1.3e-14 Score=139.40 Aligned_cols=156 Identities=19% Similarity=0.240 Sum_probs=127.2
Q ss_pred CCcccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccccch-hhhccCcCc
Q 007656 220 PHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITELPE-ELKLLVNLK 297 (594)
Q Consensus 220 ~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L~ 297 (594)
++++.|++ .++.+..++...|.++++|++|++++| .+ ..+ |..+..+. +|++|++++|.++.+|. .+..+++|+
T Consensus 35 ~~l~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l-~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~ 110 (251)
T 3m19_A 35 ADTEKLDL-QSTGLATLSDATFRGLTKLTWLNLDYN-QL-QTLSAGVFDDLT-ELGTLGLANNQLASLPLGVFDHLTQLD 110 (251)
T ss_dssp TTCCEEEC-TTSCCCCCCTTTTTTCTTCCEEECTTS-CC-CCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCCEEEc-cCCCcCccCHhHhcCcccCCEEECCCC-cC-CccCHhHhccCC-cCCEEECCCCcccccChhHhcccCCCC
Confidence 58999999 778888888877999999999999999 99 666 55688899 99999999999999986 678999999
Q ss_pred EEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHh
Q 007656 298 CLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILL 377 (594)
Q Consensus 298 ~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 377 (594)
+|++++| .++.+|.+.+..+++|++|++++|.+... ....+..+++|+.|+++.|...
T Consensus 111 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---------------~~~~~~~l~~L~~L~L~~N~l~------ 168 (251)
T 3m19_A 111 KLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSI---------------PAGAFDKLTNLQTLSLSTNQLQ------ 168 (251)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC---------------CTTTTTTCTTCCEEECCSSCCS------
T ss_pred EEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCcc---------------CHHHcCcCcCCCEEECCCCcCC------
Confidence 9999999 78999987789999999999999988752 2224677888888777755432
Q ss_pred cCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCc
Q 007656 378 SSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIEL 423 (594)
Q Consensus 378 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 423 (594)
. + ....+..+++|+.|++++|...
T Consensus 169 --------------------~-~-~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 169 --------------------S-V-PHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp --------------------C-C-CTTTTTTCTTCCEEECCSCCBC
T ss_pred --------------------c-c-CHHHHhCCCCCCEEEeeCCcee
Confidence 2 2 1225667788888888887543
No 99
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.57 E-value=7.9e-15 Score=145.56 Aligned_cols=225 Identities=16% Similarity=0.101 Sum_probs=131.8
Q ss_pred CcccEEEccCCcCcccc-cCc--hHHhhhhcCcEEEccCCccc-ccchhh--hccCcCcEEecCCCCCCCC-cc---hhh
Q 007656 245 PSLKVLKMSNCWNFTLK-LPL--AMSELGSSLELLDISYASIT-ELPEEL--KLLVNLKCLNLRWTDTLNK-IP---RQL 314 (594)
Q Consensus 245 ~~L~~L~L~~~~~l~~~-lp~--~i~~l~~~L~~L~ls~~~l~-~lp~~i--~~L~~L~~L~L~~~~~l~~-lp---~~~ 314 (594)
..++.|.+.++ .++.. +.. ....+. +|++|++++|.+. ..|..+ ..+++|++|++++| .+.. .+ ...
T Consensus 64 ~~l~~l~l~~~-~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~ 140 (310)
T 4glp_A 64 LRVRRLTVGAA-QVPAQLLVGALRVLAYS-RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQ 140 (310)
T ss_dssp CCCCEEEECSC-CCBHHHHHHHHHHHHHS-CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHH
T ss_pred cceeEEEEeCC-cCCHHHHHHHHHhcccC-ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHH
Confidence 34667777776 55111 111 122344 6888888888776 344455 77788888888887 4443 22 112
Q ss_pred hcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcCchhhhcceeEEEEeC
Q 007656 315 ISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLHLT 394 (594)
Q Consensus 315 ~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 394 (594)
+..+++|++|++++|.+... .+..+.++++|+.|+++.|.......+.
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~---------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----------------- 188 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAF---------------SCEQVRAFPALTSLDLSDNPGLGERGLM----------------- 188 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCC---------------CTTSCCCCTTCCEEECCSCTTCHHHHHH-----------------
T ss_pred hhhccCCCEEEeeCCCcchh---------------hHHHhccCCCCCEEECCCCCCccchhhh-----------------
Confidence 45677888888888777541 2234667777777777766543222111
Q ss_pred CCcccccccccccCccCCceEEecccCCceeeeec--ccccccccCCCccCCCcceEeEecCCCCccc-c-ccccC---C
Q 007656 395 GDTASIIDATVFADLNQLNQLWIDEGIELEELKID--YTEIVRKRREPFVFRSLHCVRIEQCHKLKDV-T-FLIFA---P 467 (594)
Q Consensus 395 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~--~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l-~-~l~~l---~ 467 (594)
....+..+++|++|++++|.... ++.. ++. ..+++|++|++++| .+... | .+..+ +
T Consensus 189 -------~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~--------~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~ 251 (310)
T 4glp_A 189 -------AALCPHKFPAIQNLALRNTGMET-PTGVCAALA--------AAGVQPHSLDLSHN-SLRATVNPSAPRCMWSS 251 (310)
T ss_dssp -------TTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHH--------HHTCCCSSEECTTS-CCCCCCCSCCSSCCCCT
T ss_pred -------HHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHH--------hcCCCCCEEECCCC-CCCccchhhHHhccCcC
Confidence 11133566778888888765432 1111 111 24677888888875 44443 3 34443 6
Q ss_pred CCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCCCCccCCCccEEeecccC
Q 007656 468 NLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKPLPFTHLKEISVGYCR 538 (594)
Q Consensus 468 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~l~~L~~L~i~~C~ 538 (594)
+|++|+|++| .++.++. .+ +++|+.|+|++| .++.++. ...+++|+.|++++++
T Consensus 252 ~L~~L~Ls~N-~l~~lp~------------~~--~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 252 ALNSLNLSFA-GLEQVPK------------GL--PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp TCCCEECCSS-CCCSCCS------------CC--CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTT
T ss_pred cCCEEECCCC-CCCchhh------------hh--cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCC
Confidence 8888888877 4545432 22 377888888877 5666654 4557777777777653
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=1.1e-14 Score=156.76 Aligned_cols=169 Identities=19% Similarity=0.231 Sum_probs=131.8
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLK 297 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~ 297 (594)
.+++|+.|++ .++.+..++. +..+++|+.|+|++| .+ ..+|+ +..+. +|++|+|++|.+..+| .+..+++|+
T Consensus 41 ~L~~L~~L~l-~~n~i~~l~~--l~~l~~L~~L~Ls~N-~l-~~~~~-l~~l~-~L~~L~Ls~N~l~~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 41 ELNSIDQIIA-NNSDIKSVQG--IQYLPNVTKLFLNGN-KL-TDIKP-LTNLK-NLGWLFLDENKIKDLS-SLKDLKKLK 112 (605)
T ss_dssp HHTTCCCCBC-TTCCCCCCTT--GGGCTTCCEEECTTS-CC-CCCGG-GGGCT-TCCEEECCSSCCCCCT-TSTTCTTCC
T ss_pred cCCCCCEEEC-cCCCCCCChH--HccCCCCCEEEeeCC-CC-CCChh-hccCC-CCCEEECcCCCCCCCh-hhccCCCCC
Confidence 6789999999 7778888874 899999999999999 99 77876 88999 9999999999999988 799999999
Q ss_pred EEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHh
Q 007656 298 CLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILL 377 (594)
Q Consensus 298 ~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 377 (594)
+|+|++| .+..++. +..+++|+.|++++|.+.. . ..+..+++|+.|+++.|.+..+..
T Consensus 113 ~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~~----------------l-~~l~~l~~L~~L~Ls~N~l~~~~~-- 170 (605)
T 1m9s_A 113 SLSLEHN-GISDING--LVHLPQLESLYLGNNKITD----------------I-TVLSRLTKLDTLSLEDNQISDIVP-- 170 (605)
T ss_dssp EEECTTS-CCCCCGG--GGGCTTCSEEECCSSCCCC----------------C-GGGGSCTTCSEEECCSSCCCCCGG--
T ss_pred EEEecCC-CCCCCcc--ccCCCccCEEECCCCccCC----------------c-hhhcccCCCCEEECcCCcCCCchh--
Confidence 9999999 7888876 8999999999999998864 1 458888999999888776544322
Q ss_pred cCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCC
Q 007656 378 SSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIE 422 (594)
Q Consensus 378 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 422 (594)
...+++|+.|+|+.+.+.. + ..+..+++|+.|+|++|..
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~-l---~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISD-L---RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCB-C---GGGTTCTTCSEEECCSEEE
T ss_pred --hccCCCCCEEECcCCCCCC-C---hHHccCCCCCEEEccCCcC
Confidence 1223456666664444443 2 2355556666666666543
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.55 E-value=1.3e-15 Score=154.76 Aligned_cols=259 Identities=14% Similarity=0.050 Sum_probs=151.2
Q ss_pred cccccccccccCchhhcCCCcccEEEccCCcCcccccC-----chHHhhhhcCcEEEccCCcccccc-hhhhcc-----C
Q 007656 226 FLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLP-----LAMSELGSSLELLDISYASITELP-EELKLL-----V 294 (594)
Q Consensus 226 ~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp-----~~i~~l~~~L~~L~ls~~~l~~lp-~~i~~L-----~ 294 (594)
.+ +.+.+....+.++...++|++|++++| .+ +..+ ..+..+..+|++|++++|.++... ..+..+ +
T Consensus 4 ~l-s~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 4 KL-TLHPGSNPVEEFTSIPHGVTSLDLSLN-NL-YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EC-CCCTTCCHHHHHHTSCTTCCEEECTTS-CG-GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred cc-ccccchHHHHHHHhCCCCceEEEccCC-CC-ChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 44 444555555554555566888888888 77 5554 334444326888888888777653 355554 7
Q ss_pred cCcEEecCCCCCCCCcchhh----hcCC-CCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCC-CCCcEEEEEEc
Q 007656 295 NLKCLNLRWTDTLNKIPRQL----ISIL-SWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGL-KYLEVLELTLG 368 (594)
Q Consensus 295 ~L~~L~L~~~~~l~~lp~~~----~~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~l~~~ 368 (594)
+|++|++++| .++..+... +..+ ++|++|++++|.+.... .......+..+ ++|+.|+++.|
T Consensus 81 ~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-----------~~~l~~~l~~~~~~L~~L~Ls~N 148 (362)
T 3goz_A 81 NVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS-----------SSEFKQAFSNLPASITSLNLRGN 148 (362)
T ss_dssp TCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC-----------HHHHHHHHTTSCTTCCEEECTTS
T ss_pred CccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH-----------HHHHHHHHHhCCCceeEEEccCC
Confidence 7888888887 565544322 3334 67888888877765411 00122223332 46666666554
Q ss_pred chhhHHHHhcCchhhhcceeEEEEeCCCcccccccccccCcc-CCceEEecccCCceeeeecccccccccCCCccC-CCc
Q 007656 369 SYHALQILLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLN-QLNQLWIDEGIELEELKIDYTEIVRKRREPFVF-RSL 446 (594)
Q Consensus 369 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~-~~L 446 (594)
....... .. ....+..++ +|++|++++|.... ..+..+.. ....+ ++|
T Consensus 149 ~l~~~~~---------------------~~---l~~~l~~~~~~L~~L~Ls~n~l~~-~~~~~l~~-----~l~~~~~~L 198 (362)
T 3goz_A 149 DLGIKSS---------------------DE---LIQILAAIPANVNSLNLRGNNLAS-KNCAELAK-----FLASIPASV 198 (362)
T ss_dssp CGGGSCH---------------------HH---HHHHHHTSCTTCCEEECTTSCGGG-SCHHHHHH-----HHHTSCTTC
T ss_pred cCCHHHH---------------------HH---HHHHHhcCCccccEeeecCCCCch-hhHHHHHH-----HHHhCCCCC
Confidence 4331000 00 111334444 89999999986544 22322210 00134 599
Q ss_pred ceEeEecCCCCcc-----cc-cccc-CCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccc-----
Q 007656 447 HCVRIEQCHKLKD-----VT-FLIF-APNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLP----- 514 (594)
Q Consensus 447 ~~L~L~~c~~l~~-----l~-~l~~-l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~----- 514 (594)
+.|+|++| .++. ++ .+.. .++|++|+|++| .++..+.. .+...+..+++|+.|++++|.
T Consensus 199 ~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~-------~l~~~~~~l~~L~~L~L~~n~l~~i~ 269 (362)
T 3goz_A 199 TSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLE-------NLKLLKDSLKHLQTVYLDYDIVKNMS 269 (362)
T ss_dssp CEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHH-------HHHHTTTTTTTCSEEEEEHHHHTTCC
T ss_pred CEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHH-------HHHHHHhcCCCccEEEeccCCccccC
Confidence 99999996 4665 43 3545 459999999999 44332110 001245678999999999984
Q ss_pred --cccccCCCCccCCCccEEeecccC
Q 007656 515 --ALKSIYWKPLPFTHLKEISVGYCR 538 (594)
Q Consensus 515 --~L~~l~~~~~~l~~L~~L~i~~C~ 538 (594)
.+..+......+++|+.|++++++
T Consensus 270 ~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 270 KEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHHHHHHhccCCceEEEecCCCc
Confidence 133344445567889999998865
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.52 E-value=5e-14 Score=129.79 Aligned_cols=153 Identities=20% Similarity=0.193 Sum_probs=102.7
Q ss_pred hHHhhhhcCcEEEccCCcccccchhhhccCcCcEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCcccc
Q 007656 265 AMSELGSSLELLDISYASITELPEELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLF 344 (594)
Q Consensus 265 ~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 344 (594)
....+. +|++|++++|.++.+| .+..+++|++|++++| .+..++. +..+++|++|++++|.+...
T Consensus 39 ~~~~l~-~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~--l~~l~~L~~L~l~~n~l~~~---------- 103 (197)
T 4ezg_A 39 TEAQMN-SLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYNP--ISGLSNLERLRIMGKDVTSD---------- 103 (197)
T ss_dssp BHHHHH-TCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCGG--GTTCTTCCEEEEECTTCBGG----------
T ss_pred ChhhcC-CccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcchh--hhcCCCCCEEEeECCccCcc----------
Confidence 346777 8888888888888888 6888888888888888 6776664 78888888888888776531
Q ss_pred CCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCce
Q 007656 345 GGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELE 424 (594)
Q Consensus 345 ~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 424 (594)
.+..+..+++|+.|+++.+.... . ....+..+++|+.|++++|..+.
T Consensus 104 -----~~~~l~~l~~L~~L~Ls~n~i~~---------------------------~-~~~~l~~l~~L~~L~L~~n~~i~ 150 (197)
T 4ezg_A 104 -----KIPNLSGLTSLTLLDISHSAHDD---------------------------S-ILTKINTLPKVNSIDLSYNGAIT 150 (197)
T ss_dssp -----GSCCCTTCTTCCEEECCSSBCBG---------------------------G-GHHHHTTCSSCCEEECCSCTBCC
T ss_pred -----cChhhcCCCCCCEEEecCCccCc---------------------------H-hHHHHhhCCCCCEEEccCCCCcc
Confidence 22335566666666665443321 0 11245566777777777766444
Q ss_pred eeeecccccccccCCCccCCCcceEeEecCCCCccccccccCCCCceEeEccC
Q 007656 425 ELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDVTFLIFAPNLKSLDLSYC 477 (594)
Q Consensus 425 ~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~ 477 (594)
+++ .+ ..+++|+.|++++| .+..++.+..+++|++|++++|
T Consensus 151 ~~~--~l---------~~l~~L~~L~l~~n-~i~~~~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 151 DIM--PL---------KTLPELKSLNIQFD-GVHDYRGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CCG--GG---------GGCSSCCEEECTTB-CCCCCTTGGGCSSCCEEEECBC
T ss_pred ccH--hh---------cCCCCCCEEECCCC-CCcChHHhccCCCCCEEEeeCc
Confidence 332 22 25777777777774 4666666777777777777776
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.52 E-value=3.5e-14 Score=151.26 Aligned_cols=188 Identities=19% Similarity=0.234 Sum_probs=126.6
Q ss_pred CCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCcEE
Q 007656 220 PHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLKCL 299 (594)
Q Consensus 220 ~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L 299 (594)
.+|+.|++ .++.++.+|..+ +++|++|++++| .+ +.+| ..+. +|++|++++|.++.+|. +.+ +|++|
T Consensus 59 ~~L~~L~L-s~n~L~~lp~~l---~~~L~~L~Ls~N-~l-~~ip---~~l~-~L~~L~Ls~N~l~~ip~-l~~--~L~~L 125 (571)
T 3cvr_A 59 NQFSELQL-NRLNLSSLPDNL---PPQITVLEITQN-AL-ISLP---ELPA-SLEYLDACDNRLSTLPE-LPA--SLKHL 125 (571)
T ss_dssp TTCSEEEC-CSSCCSCCCSCC---CTTCSEEECCSS-CC-SCCC---CCCT-TCCEEECCSSCCSCCCC-CCT--TCCEE
T ss_pred CCccEEEe-CCCCCCccCHhH---cCCCCEEECcCC-CC-cccc---cccC-CCCEEEccCCCCCCcch-hhc--CCCEE
Confidence 47888888 666777788763 377888888888 88 7787 3456 88888888888888887 554 88888
Q ss_pred ecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcC
Q 007656 300 NLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSS 379 (594)
Q Consensus 300 ~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 379 (594)
++++| .++.+|. .+++|+.|++++|.+.. .+. .+++|+.|+++.
T Consensus 126 ~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~l~~----------------lp~---~l~~L~~L~Ls~------------ 169 (571)
T 3cvr_A 126 DVDNN-QLTMLPE----LPALLEYINADNNQLTM----------------LPE---LPTSLEVLSVRN------------ 169 (571)
T ss_dssp ECCSS-CCSCCCC----CCTTCCEEECCSSCCSC----------------CCC---CCTTCCEEECCS------------
T ss_pred ECCCC-cCCCCCC----cCccccEEeCCCCccCc----------------CCC---cCCCcCEEECCC------------
Confidence 88888 6777776 57888888888887654 111 344555555443
Q ss_pred chhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCcc
Q 007656 380 NKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKD 459 (594)
Q Consensus 380 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~ 459 (594)
+.+.. ++. +. ++|+.|++++|... .++. +.. ......+.|+.|+|++| .++.
T Consensus 170 --------------N~L~~-lp~---l~--~~L~~L~Ls~N~L~-~lp~--~~~----~L~~~~~~L~~L~Ls~N-~l~~ 221 (571)
T 3cvr_A 170 --------------NQLTF-LPE---LP--ESLEALDVSTNLLE-SLPA--VPV----RNHHSEETEIFFRCREN-RITH 221 (571)
T ss_dssp --------------SCCSC-CCC---CC--TTCCEEECCSSCCS-SCCC--CC------------CCEEEECCSS-CCCC
T ss_pred --------------CCCCC-cch---hh--CCCCEEECcCCCCC-chhh--HHH----hhhcccccceEEecCCC-ccee
Confidence 34443 322 33 78889999887544 3332 220 00011223399999984 6777
Q ss_pred cc-ccccCCCCceEeEccCccchhhh
Q 007656 460 VT-FLIFAPNLKSLDLSYCSSMEEVI 484 (594)
Q Consensus 460 l~-~l~~l~~L~~L~L~~~~~l~~~~ 484 (594)
+| .+..+++|+.|+|++|+....++
T Consensus 222 lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 222 IPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred cCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 77 47789999999999996555444
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.51 E-value=1e-14 Score=140.85 Aligned_cols=124 Identities=21% Similarity=0.250 Sum_probs=88.6
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLK 297 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~ 297 (594)
.+.++..+++ +.+.++.++. +..+++|++|++++| .+ ..+| .+..+. +|++|++++|.++.+|. +.++++|+
T Consensus 17 ~l~~l~~l~l-~~~~i~~~~~--~~~l~~L~~L~l~~n-~i-~~l~-~l~~l~-~L~~L~L~~N~i~~~~~-l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNL-GKQSVTDLVS--QKELSGVQNFNGDNS-NI-QSLA-GMQFFT-NLKELHLSHNQISDLSP-LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHH-TCSCTTSEEC--HHHHTTCSEEECTTS-CC-CCCT-TGGGCT-TCCEEECCSSCCCCCGG-GTTCSSCC
T ss_pred HHHHHHHHHh-cCCCcccccc--hhhcCcCcEEECcCC-Cc-ccch-HHhhCC-CCCEEECCCCccCCChh-hccCCCCC
Confidence 3455666677 6666766663 677788888888888 77 7777 577777 88888888888888776 77888888
Q ss_pred EEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcch
Q 007656 298 CLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY 370 (594)
Q Consensus 298 ~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 370 (594)
+|++++| .++.+|. +.. ++|++|++++|.+.. +..+.++++|+.|+++.|..
T Consensus 89 ~L~L~~N-~l~~l~~--~~~-~~L~~L~L~~N~l~~-----------------~~~l~~l~~L~~L~Ls~N~i 140 (263)
T 1xeu_A 89 ELSVNRN-RLKNLNG--IPS-ACLSRLFLDNNELRD-----------------TDSLIHLKNLEILSIRNNKL 140 (263)
T ss_dssp EEECCSS-CCSCCTT--CCC-SSCCEEECCSSCCSB-----------------SGGGTTCTTCCEEECTTSCC
T ss_pred EEECCCC-ccCCcCc--ccc-CcccEEEccCCccCC-----------------ChhhcCcccccEEECCCCcC
Confidence 8888888 6777776 444 788888888877654 12366677777766665443
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.49 E-value=4.5e-14 Score=136.34 Aligned_cols=167 Identities=15% Similarity=0.139 Sum_probs=112.5
Q ss_pred CCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCcEEecCCCCCCCCcchhhhcCCCCCc
Q 007656 243 LMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLR 322 (594)
Q Consensus 243 ~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~ 322 (594)
.+.++..++++++ .+ ..++ .+..+. +|++|++++|.++.+| .+..+++|++|++++| .+..+|. +.++++|+
T Consensus 17 ~l~~l~~l~l~~~-~i-~~~~-~~~~l~-~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQ-SV-TDLV-SQKELS-GVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP--LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCS-CT-TSEE-CHHHHT-TCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG--GTTCSSCC
T ss_pred HHHHHHHHHhcCC-Cc-cccc-chhhcC-cCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh--hccCCCCC
Confidence 4566777788888 78 7776 578888 8999999999888888 7888889999999888 7888887 88888899
Q ss_pred EEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcCchhhhcceeEEEEeCCCcccccc
Q 007656 323 VLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLHLTGDTASIID 402 (594)
Q Consensus 323 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 402 (594)
+|++++|.+.... .+.. ++|+.|+++ .+.+.. +
T Consensus 89 ~L~L~~N~l~~l~-----------------~~~~-~~L~~L~L~--------------------------~N~l~~-~-- 121 (263)
T 1xeu_A 89 ELSVNRNRLKNLN-----------------GIPS-ACLSRLFLD--------------------------NNELRD-T-- 121 (263)
T ss_dssp EEECCSSCCSCCT-----------------TCCC-SSCCEEECC--------------------------SSCCSB-S--
T ss_pred EEECCCCccCCcC-----------------cccc-CcccEEEcc--------------------------CCccCC-C--
Confidence 9998888765410 0111 333333333 233332 2
Q ss_pred cccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCccccccccCCCCceEeEccCc
Q 007656 403 ATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDVTFLIFAPNLKSLDLSYCS 478 (594)
Q Consensus 403 ~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~ 478 (594)
..+..+++|+.|++++|.... + + .+ ..+++|+.|++++| .+..++.+..+++|+.|++++|.
T Consensus 122 -~~l~~l~~L~~L~Ls~N~i~~-~-~-~l---------~~l~~L~~L~L~~N-~i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 122 -DSLIHLKNLEILSIRNNKLKS-I-V-ML---------GFLSKLEVLDLHGN-EITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp -GGGTTCTTCCEEECTTSCCCB-C-G-GG---------GGCTTCCEEECTTS-CCCBCTTSTTCCCCCEEEEEEEE
T ss_pred -hhhcCcccccEEECCCCcCCC-C-h-HH---------ccCCCCCEEECCCC-cCcchHHhccCCCCCEEeCCCCc
Confidence 135666777777777754333 2 1 22 25677777777774 45555666677777777777763
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=7.2e-14 Score=131.05 Aligned_cols=131 Identities=23% Similarity=0.301 Sum_probs=111.0
Q ss_pred CCcccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccccchh-hhccCcCc
Q 007656 220 PHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITELPEE-LKLLVNLK 297 (594)
Q Consensus 220 ~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~lp~~-i~~L~~L~ 297 (594)
++|+.|++ .++.++.++...|..+++|++|+|++| .+ ..+ |..+..+. +|++|++++|.++.+|.. +..+++|+
T Consensus 32 ~~l~~L~l-~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i-~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 107 (220)
T 2v9t_B 32 ETITEIRL-EQNTIKVIPPGAFSPYKKLRRIDLSNN-QI-SELAPDAFQGLR-SLNSLVLYGNKITELPKSLFEGLFSLQ 107 (220)
T ss_dssp TTCCEEEC-CSSCCCEECTTSSTTCTTCCEEECCSS-CC-CEECTTTTTTCS-SCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCEEEC-CCCcCCCcCHhHhhCCCCCCEEECCCC-cC-CCcCHHHhhCCc-CCCEEECCCCcCCccCHhHccCCCCCC
Confidence 58899999 777888888877899999999999999 88 655 78899998 999999999999999874 68899999
Q ss_pred EEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcch
Q 007656 298 CLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY 370 (594)
Q Consensus 298 ~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 370 (594)
+|++++| .+..++.+.+..+++|++|++++|.+... ....+..+++|+.|+++.|.+
T Consensus 108 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 108 LLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTI---------------AKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC---------------CTTTTTTCTTCCEEECCSSCE
T ss_pred EEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEE---------------CHHHHhCCCCCCEEEeCCCCc
Confidence 9999999 78888766689999999999999988762 223377788999999887754
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.48 E-value=8.3e-14 Score=129.56 Aligned_cols=102 Identities=22% Similarity=0.289 Sum_probs=66.8
Q ss_pred cccccccccccccCchhhcCCCcccEEEccCCcCcccccCc-hHHhhhhcCcEEEccCCcccccch-hhhccCcCcEEec
Q 007656 224 TLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPL-AMSELGSSLELLDISYASITELPE-ELKLLVNLKCLNL 301 (594)
Q Consensus 224 ~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~-~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L~~L~L 301 (594)
.++. .++.+..+|.. -.++|++|++++| .+ ..+|. .+..+. +|++|++++|.++.+|. .+..+++|++|++
T Consensus 11 ~v~c-~~~~l~~~p~~---~~~~l~~L~l~~n-~l-~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 11 TVEC-YSQGRTSVPTG---IPAQTTYLDLETN-SL-KSLPNGVFDELT-SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp EEEC-CSSCCSSCCSC---CCTTCSEEECCSS-CC-CCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred EEEe-cCCCccCCCCC---CCCCCcEEEcCCC-cc-CcCChhhhcccc-cCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence 3444 44556666654 2356777777777 77 55544 355666 77777777777777765 3567777777777
Q ss_pred CCCCCCCCcchhhhcCCCCCcEEEecCCCCCc
Q 007656 302 RWTDTLNKIPRQLISILSWLRVLRMLGTGWFN 333 (594)
Q Consensus 302 ~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~ 333 (594)
++| .++.+|...+.++++|++|++++|.+..
T Consensus 84 s~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 114 (208)
T 2o6s_A 84 STN-QLQSLPNGVFDKLTQLKELALNTNQLQS 114 (208)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCC-cCCccCHhHhcCccCCCEEEcCCCcCcc
Confidence 777 5666666556677777777777766543
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.47 E-value=1.5e-13 Score=146.37 Aligned_cols=177 Identities=16% Similarity=0.157 Sum_probs=132.5
Q ss_pred CcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCcEEecCCCCCCCCcchhhhcCCCCCcEE
Q 007656 245 PSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLRVL 324 (594)
Q Consensus 245 ~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~~L 324 (594)
.+|++|++++| .+ +.+|..+. . +|++|++++|.|+.+| ..+++|++|++++| .++.+|. +.+ +|++|
T Consensus 59 ~~L~~L~Ls~n-~L-~~lp~~l~--~-~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~--l~~--~L~~L 125 (571)
T 3cvr_A 59 NQFSELQLNRL-NL-SSLPDNLP--P-QITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE--LPA--SLKHL 125 (571)
T ss_dssp TTCSEEECCSS-CC-SCCCSCCC--T-TCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC--CCT--TCCEE
T ss_pred CCccEEEeCCC-CC-CccCHhHc--C-CCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch--hhc--CCCEE
Confidence 38999999999 99 77988764 5 9999999999999999 56899999999999 7888987 555 89999
Q ss_pred EecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcCchhhhcceeEEEEeCCCcccccccc
Q 007656 325 RMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLHLTGDTASIIDAT 404 (594)
Q Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 404 (594)
++++|.+.. .+. .+++|+.|+++.| .+.. ++.
T Consensus 126 ~Ls~N~l~~----------------lp~---~l~~L~~L~Ls~N--------------------------~l~~-lp~-- 157 (571)
T 3cvr_A 126 DVDNNQLTM----------------LPE---LPALLEYINADNN--------------------------QLTM-LPE-- 157 (571)
T ss_dssp ECCSSCCSC----------------CCC---CCTTCCEEECCSS--------------------------CCSC-CCC--
T ss_pred ECCCCcCCC----------------CCC---cCccccEEeCCCC--------------------------ccCc-CCC--
Confidence 999998764 111 3555655555533 3333 322
Q ss_pred cccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCccccccccCCCC-------ceEeEccC
Q 007656 405 VFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDVTFLIFAPNL-------KSLDLSYC 477 (594)
Q Consensus 405 ~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L-------~~L~L~~~ 477 (594)
.+++|+.|++++|.... ++. . .++|+.|+|++| .++.+|.+.. +| +.|+|++|
T Consensus 158 ---~l~~L~~L~Ls~N~L~~-lp~-l------------~~~L~~L~Ls~N-~L~~lp~~~~--~L~~~~~~L~~L~Ls~N 217 (571)
T 3cvr_A 158 ---LPTSLEVLSVRNNQLTF-LPE-L------------PESLEALDVSTN-LLESLPAVPV--RNHHSEETEIFFRCREN 217 (571)
T ss_dssp ---CCTTCCEEECCSSCCSC-CCC-C------------CTTCCEEECCSS-CCSSCCCCC----------CCEEEECCSS
T ss_pred ---cCCCcCEEECCCCCCCC-cch-h------------hCCCCEEECcCC-CCCchhhHHH--hhhcccccceEEecCCC
Confidence 46899999999976544 322 1 278999999995 6778776333 67 99999998
Q ss_pred ccchhhhccCccCCCCcccCCCccccccceeccccccc
Q 007656 478 SSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPA 515 (594)
Q Consensus 478 ~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 515 (594)
.++.++. .+..+++|+.|+|++|+-
T Consensus 218 -~l~~lp~------------~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 218 -RITHIPE------------NILSLDPTCTIILEDNPL 242 (571)
T ss_dssp -CCCCCCG------------GGGGSCTTEEEECCSSSC
T ss_pred -cceecCH------------HHhcCCCCCEEEeeCCcC
Confidence 6666654 566799999999999853
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=9.3e-14 Score=124.44 Aligned_cols=134 Identities=22% Similarity=0.181 Sum_probs=109.7
Q ss_pred CCCCccccccccccccc--ccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccc-cchhhhccC
Q 007656 218 TCPHLHTLFLASNNSLQ--RITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITE-LPEELKLLV 294 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~--~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~-lp~~i~~L~ 294 (594)
..++|+.|++ .++.+. .+|.. +..+++|++|++++| .+ ..+ ..+..+. +|++|++++|.++. +|..+..++
T Consensus 22 ~~~~L~~L~l-~~n~l~~~~i~~~-~~~l~~L~~L~l~~n-~l-~~~-~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 22 TPAAVRELVL-DNCKSNDGKIEGL-TAEFVNLEFLSLINV-GL-ISV-SNLPKLP-KLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp CTTSCSEEEC-CSCBCBTTBCSSC-CGGGGGCCEEEEESS-CC-CCC-SSCCCCS-SCCEEEEESCCCCSCCCHHHHHCT
T ss_pred CcccCCEEEC-CCCCCChhhHHHH-HHhCCCCCEEeCcCC-CC-CCh-hhhccCC-CCCEEECcCCcCchHHHHHHhhCC
Confidence 4578999999 666676 78776 789999999999999 89 777 6788898 99999999999998 787888899
Q ss_pred cCcEEecCCCCCCCCcch-hhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcch
Q 007656 295 NLKCLNLRWTDTLNKIPR-QLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY 370 (594)
Q Consensus 295 ~L~~L~L~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 370 (594)
+|++|++++| .++.+|. ..+..+++|++|++++|.+.... ......+..+++|+.|+++.+..
T Consensus 96 ~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~------------~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 96 NLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLN------------DYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp TCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTST------------THHHHHHTTCSSCCEETTEETTS
T ss_pred CCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchH------------HHHHHHHHhCccCcEecCCCCCh
Confidence 9999999999 7888873 34889999999999999876511 01124688899999998886654
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.46 E-value=1.3e-13 Score=129.21 Aligned_cols=124 Identities=20% Similarity=0.286 Sum_probs=97.7
Q ss_pred ccccccccccccccCchhhcCCCcccEEEccCCcCcccccCc-hHHhhhhcCcEEEccCCccccc-chhhhccCcCcEEe
Q 007656 223 HTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPL-AMSELGSSLELLDISYASITEL-PEELKLLVNLKCLN 300 (594)
Q Consensus 223 ~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~-~i~~l~~~L~~L~ls~~~l~~l-p~~i~~L~~L~~L~ 300 (594)
+.+++ .++.++.+|... .++|+.|++++| .+ ..+|. .+..+. +|++|++++|.++.+ |..+..+++|++|+
T Consensus 14 ~~v~c-~~~~l~~iP~~l---~~~l~~L~l~~n-~i-~~i~~~~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~ 86 (220)
T 2v9t_B 14 NIVDC-RGKGLTEIPTNL---PETITEIRLEQN-TI-KVIPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLV 86 (220)
T ss_dssp TEEEC-TTSCCSSCCSSC---CTTCCEEECCSS-CC-CEECTTSSTTCT-TCCEEECCSSCCCEECTTTTTTCSSCCEEE
T ss_pred CEEEc-CCCCcCcCCCcc---CcCCCEEECCCC-cC-CCcCHhHhhCCC-CCCEEECCCCcCCCcCHHHhhCCcCCCEEE
Confidence 45677 667788888763 268999999999 88 77754 688888 999999999999888 56899999999999
Q ss_pred cCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcc
Q 007656 301 LRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGS 369 (594)
Q Consensus 301 L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 369 (594)
|++| .++.+|.+.+.++++|++|++++|.+... .+..+..+++|+.|+++.|.
T Consensus 87 Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 87 LYGN-KITELPKSLFEGLFSLQLLLLNANKINCL---------------RVDAFQDLHNLNLLSLYDNK 139 (220)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC---------------CTTTTTTCTTCCEEECCSSC
T ss_pred CCCC-cCCccCHhHccCCCCCCEEECCCCCCCEe---------------CHHHcCCCCCCCEEECCCCc
Confidence 9999 78899988788999999999999887652 23346666666666666443
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.45 E-value=2e-13 Score=128.88 Aligned_cols=131 Identities=24% Similarity=0.328 Sum_probs=104.0
Q ss_pred CCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCch-HHhhhhcCcEEEccCCcccccch-hhhccCcC
Q 007656 219 CPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLA-MSELGSSLELLDISYASITELPE-ELKLLVNL 296 (594)
Q Consensus 219 ~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~-i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L 296 (594)
.++|++|++ +++.+..+++..|..+++|++|+|++| .+ +.+|.. +..+. +|++|++++|.++.+|. .+..+++|
T Consensus 39 ~~~L~~L~L-s~n~i~~~~~~~~~~l~~L~~L~L~~N-~l-~~i~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~~l~~L 114 (229)
T 3e6j_A 39 PTNAQILYL-HDNQITKLEPGVFDSLINLKELYLGSN-QL-GALPVGVFDSLT-QLTVLDLGTNQLTVLPSAVFDRLVHL 114 (229)
T ss_dssp CTTCSEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSS-CC-CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCEEEc-CCCccCccCHHHhhCccCCcEEECCCC-CC-CCcChhhcccCC-CcCEEECCCCcCCccChhHhCcchhh
Confidence 367888888 677787887666888889999999998 88 777644 57787 89999999998888876 46788899
Q ss_pred cEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcch
Q 007656 297 KCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY 370 (594)
Q Consensus 297 ~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 370 (594)
++|++++| .+..+|.. +..+++|++|++++|.+... ....+..+++|+.|++..|.+
T Consensus 115 ~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 115 KELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKSI---------------PHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCCCC---------------CTTTTTTCTTCCEEECTTSCB
T ss_pred CeEeccCC-cccccCcc-cccCCCCCEEECCCCcCCcc---------------CHHHHhCCCCCCEEEeeCCCc
Confidence 99999888 78888876 78888999999988877652 123477788888888876654
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.45 E-value=2.5e-13 Score=128.21 Aligned_cols=150 Identities=20% Similarity=0.213 Sum_probs=119.9
Q ss_pred cccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccccch-hhhccCcCcEE
Q 007656 222 LHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITELPE-ELKLLVNLKCL 299 (594)
Q Consensus 222 L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L~~L 299 (594)
.+.++. .++.++.+|... .++|++|++++| .+ ..+ |..+..+. +|++|++++|.++.+|. .+..+++|++|
T Consensus 21 ~~~v~c-~~~~l~~ip~~~---~~~L~~L~Ls~n-~i-~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 93 (229)
T 3e6j_A 21 GTTVDC-RSKRHASVPAGI---PTNAQILYLHDN-QI-TKLEPGVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLTVL 93 (229)
T ss_dssp TTEEEC-TTSCCSSCCSCC---CTTCSEEECCSS-CC-CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEeEc-cCCCcCccCCCC---CCCCCEEEcCCC-cc-CccCHHHhhCcc-CCcEEECCCCCCCCcChhhcccCCCcCEE
Confidence 456777 777888999763 389999999999 99 655 77788998 99999999999999986 57899999999
Q ss_pred ecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcC
Q 007656 300 NLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSS 379 (594)
Q Consensus 300 ~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 379 (594)
++++| .++.+|...+..+++|++|++++|.+.. .+..+..+++|+.|+++.|.+.
T Consensus 94 ~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~----------------lp~~~~~l~~L~~L~L~~N~l~-------- 148 (229)
T 3e6j_A 94 DLGTN-QLTVLPSAVFDRLVHLKELFMCCNKLTE----------------LPRGIERLTHLTHLALDQNQLK-------- 148 (229)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCS----------------CCTTGGGCTTCSEEECCSSCCC--------
T ss_pred ECCCC-cCCccChhHhCcchhhCeEeccCCcccc----------------cCcccccCCCCCEEECCCCcCC--------
Confidence 99999 7899988778899999999999998875 3444677888888777755332
Q ss_pred chhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCc
Q 007656 380 NKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIEL 423 (594)
Q Consensus 380 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 423 (594)
. + ....+..+++|+.|++++|...
T Consensus 149 ------------------~-~-~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 149 ------------------S-I-PHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp ------------------C-C-CTTTTTTCTTCCEEECTTSCBC
T ss_pred ------------------c-c-CHHHHhCCCCCCEEEeeCCCcc
Confidence 2 2 1135677788888888887544
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.44 E-value=3.2e-13 Score=124.35 Aligned_cols=129 Identities=18% Similarity=0.214 Sum_probs=74.2
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccc-cchhhhccCcC
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITE-LPEELKLLVNL 296 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~-lp~~i~~L~~L 296 (594)
.+++|++|++ +++.+..++. +..+++|++|++++| .++...|..++.++ +|++|++++|.++. .|..++.+++|
T Consensus 64 ~l~~L~~L~l-~~n~~~~~~~--l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~-~L~~L~Ls~n~i~~~~~~~l~~l~~L 138 (197)
T 4ezg_A 64 YAHNIKDLTI-NNIHATNYNP--ISGLSNLERLRIMGK-DVTSDKIPNLSGLT-SLTLLDISHSAHDDSILTKINTLPKV 138 (197)
T ss_dssp GCTTCSEEEE-ESCCCSCCGG--GTTCTTCCEEEEECT-TCBGGGSCCCTTCT-TCCEEECCSSBCBGGGHHHHTTCSSC
T ss_pred cCCCCCEEEc-cCCCCCcchh--hhcCCCCCEEEeECC-ccCcccChhhcCCC-CCCEEEecCCccCcHhHHHHhhCCCC
Confidence 5666666666 3334544432 566666666666666 66223455566666 66666666666653 44456666666
Q ss_pred cEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcch
Q 007656 297 KCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY 370 (594)
Q Consensus 297 ~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 370 (594)
++|++++|..++.+|. +..+++|++|++++|.+.. .. .+..+++|+.|+++.|.+
T Consensus 139 ~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~----------------~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 139 NSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD----------------YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC----------------CT-TGGGCSSCCEEEECBC--
T ss_pred CEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC----------------hH-HhccCCCCCEEEeeCccc
Confidence 6666666633566653 6666666666666665543 11 355566666666665543
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.43 E-value=4.7e-13 Score=124.43 Aligned_cols=130 Identities=25% Similarity=0.312 Sum_probs=111.4
Q ss_pred CCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCch-HHhhhhcCcEEEccCCcccccch-hhhccCcC
Q 007656 219 CPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLA-MSELGSSLELLDISYASITELPE-ELKLLVNL 296 (594)
Q Consensus 219 ~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~-i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L 296 (594)
.++|++|++ .++.+..++...|..+++|++|++++| .+ ..+|.. +..+. +|++|++++|.++.+|. .+..+++|
T Consensus 27 ~~~l~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l-~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 27 PAQTTYLDL-ETNSLKSLPNGVFDELTSLTQLYLGGN-KL-QSLPNGVFNKLT-SLTYLNLSTNQLQSLPNGVFDKLTQL 102 (208)
T ss_dssp CTTCSEEEC-CSSCCCCCCTTTTTTCTTCSEEECCSS-CC-CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCcEEEc-CCCccCcCChhhhcccccCcEEECCCC-cc-CccChhhcCCCC-CcCEEECCCCcCCccCHhHhcCccCC
Confidence 468999999 777888999888899999999999999 99 777654 57888 99999999999999987 47899999
Q ss_pred cEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEc
Q 007656 297 KCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLG 368 (594)
Q Consensus 297 ~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 368 (594)
++|++++| .++.+|...+.++++|++|++++|.+... ....+..+++|+.|+++.|
T Consensus 103 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~---------------~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 103 KELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSV---------------PDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC---------------CTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCC-cCcccCHhHhccCCcCCEEECCCCcccee---------------CHHHhccCCCccEEEecCC
Confidence 99999999 78999887789999999999999988752 2223677888888887755
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.43 E-value=2.8e-13 Score=127.01 Aligned_cols=131 Identities=20% Similarity=0.247 Sum_probs=94.9
Q ss_pred CCccccccccccccccc-CchhhcCCCcccEEEccCCcCcccccC-chHHhhhhcCcEEEccCCcccccch-hhhccCcC
Q 007656 220 PHLHTLFLASNNSLQRI-TDGFFQLMPSLKVLKMSNCWNFTLKLP-LAMSELGSSLELLDISYASITELPE-ELKLLVNL 296 (594)
Q Consensus 220 ~~L~~L~L~~~~~l~~l-~~~~~~~l~~L~~L~L~~~~~l~~~lp-~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L 296 (594)
+.++.|++ +++.++.+ +..+|..+++|++|++++| .+ ..++ ..+..+. +|++|++++|.++.+|. .+..+++|
T Consensus 32 ~~~~~L~L-~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i-~~i~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L 107 (220)
T 2v70_A 32 QYTAELRL-NNNEFTVLEATGIFKKLPQLRKINFSNN-KI-TDIEEGAFEGAS-GVNEILLTSNRLENVQHKMFKGLESL 107 (220)
T ss_dssp TTCSEEEC-CSSCCCEECCCCCGGGCTTCCEEECCSS-CC-CEECTTTTTTCT-TCCEEECCSSCCCCCCGGGGTTCSSC
T ss_pred CCCCEEEc-CCCcCCccCchhhhccCCCCCEEECCCC-cC-CEECHHHhCCCC-CCCEEECCCCccCccCHhHhcCCcCC
Confidence 35677888 66667666 3455778888888888888 77 5554 4677777 88888888888887776 47778888
Q ss_pred cEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcch
Q 007656 297 KCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY 370 (594)
Q Consensus 297 ~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 370 (594)
++|++++| .+..++...+.++++|++|++++|.+... .+..+..+++|+.|+++.|.+
T Consensus 108 ~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 108 KTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTV---------------APGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCB---------------CTTTTTTCTTCCEEECCSCCE
T ss_pred CEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEE---------------CHHHhcCCCCCCEEEecCcCC
Confidence 88888888 67777554577888888888888877652 234467777888887776654
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.42 E-value=3.5e-13 Score=126.37 Aligned_cols=123 Identities=20% Similarity=0.226 Sum_probs=93.3
Q ss_pred ccccccccccccccCchhhcCCCcccEEEccCCcCccccc-C-chHHhhhhcCcEEEccCCcccccch-hhhccCcCcEE
Q 007656 223 HTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-P-LAMSELGSSLELLDISYASITELPE-ELKLLVNLKCL 299 (594)
Q Consensus 223 ~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p-~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L~~L 299 (594)
+++++ +++.++.+|..+ .+.+++|++++| .+ ..+ | ..+..+. +|++|++++|.++.++. .+..+++|++|
T Consensus 14 ~~l~~-s~n~l~~iP~~~---~~~~~~L~L~~N-~l-~~~~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 86 (220)
T 2v70_A 14 TTVDC-SNQKLNKIPEHI---PQYTAELRLNNN-EF-TVLEATGIFKKLP-QLRKINFSNNKITDIEEGAFEGASGVNEI 86 (220)
T ss_dssp TEEEC-CSSCCSSCCSCC---CTTCSEEECCSS-CC-CEECCCCCGGGCT-TCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CEeEe-CCCCcccCccCC---CCCCCEEEcCCC-cC-CccCchhhhccCC-CCCEEECCCCcCCEECHHHhCCCCCCCEE
Confidence 57788 777788888753 345689999999 88 666 3 3477888 99999999999988876 78889999999
Q ss_pred ecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEc
Q 007656 300 NLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLG 368 (594)
Q Consensus 300 ~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 368 (594)
++++| .+..++.+.+.++++|++|++++|.+... .+..+..+++|+.|+++.|
T Consensus 87 ~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---------------~~~~~~~l~~L~~L~L~~N 139 (220)
T 2v70_A 87 LLTSN-RLENVQHKMFKGLESLKTLMLRSNRITCV---------------GNDSFIGLSSVRLLSLYDN 139 (220)
T ss_dssp ECCSS-CCCCCCGGGGTTCSSCCEEECTTSCCCCB---------------CTTSSTTCTTCSEEECTTS
T ss_pred ECCCC-ccCccCHhHhcCCcCCCEEECCCCcCCeE---------------CHhHcCCCccCCEEECCCC
Confidence 99998 78888877788899999999998887652 2233556666666655533
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.41 E-value=1.1e-14 Score=155.76 Aligned_cols=84 Identities=15% Similarity=0.059 Sum_probs=47.9
Q ss_pred cccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCccc--c-ccccCCCCceEeEccCccch
Q 007656 405 VFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDV--T-FLIFAPNLKSLDLSYCSSME 481 (594)
Q Consensus 405 ~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l--~-~l~~l~~L~~L~L~~~~~l~ 481 (594)
.+..+++|+.|++++|.... + | .+ ..+++|+.|+|++| .++.+ | .++.+++|+.|+|++| .++
T Consensus 481 ~~~~l~~L~~L~Ls~N~l~~-l-p-~l---------~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N-~l~ 546 (567)
T 1dce_A 481 ALAALRCLEVLQASDNALEN-V-D-GV---------ANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGN-SLC 546 (567)
T ss_dssp GGGGCTTCCEEECCSSCCCC-C-G-GG---------TTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTS-GGG
T ss_pred hhhcCCCCCEEECCCCCCCC-C-c-cc---------CCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCC-cCC
Confidence 45566677777777654433 2 2 22 25777777777774 45544 4 5777777777777777 344
Q ss_pred hhhccCccCCCCcccCCCccccccceecc
Q 007656 482 EVISVGKFAETPEMMGHISPFENLQSLHL 510 (594)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 510 (594)
.++. ........+|+|+.|++
T Consensus 547 ~~~~--------~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 547 QEEG--------IQERLAEMLPSVSSILT 567 (567)
T ss_dssp GSSS--------CTTHHHHHCTTCSEEEC
T ss_pred CCcc--------HHHHHHHHCcccCccCC
Confidence 4432 00011234677777653
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.40 E-value=5.5e-13 Score=135.20 Aligned_cols=103 Identities=21% Similarity=0.234 Sum_probs=71.9
Q ss_pred ccccccccccccccCchhhcCCCcccEEEccCCcCcccccCch-HH-hhhhcCcEEEccCCcccccch-hhhccCcCcEE
Q 007656 223 HTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLA-MS-ELGSSLELLDISYASITELPE-ELKLLVNLKCL 299 (594)
Q Consensus 223 ~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~-i~-~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L~~L 299 (594)
+++++ .++.++.+|..+ .+.+++|+|++| .+ ..++.. +. .+. +|++|++++|.|+.+|. .+.++++|++|
T Consensus 21 ~~l~c-~~~~l~~iP~~~---~~~l~~L~Ls~N-~l-~~l~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 93 (361)
T 2xot_A 21 NILSC-SKQQLPNVPQSL---PSYTALLDLSHN-NL-SRLRAEWTPTRLT-NLHSLLLSHNHLNFISSEAFVPVPNLRYL 93 (361)
T ss_dssp TEEEC-CSSCCSSCCSSC---CTTCSEEECCSS-CC-CEECTTSSSSCCT-TCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CEEEe-CCCCcCccCccC---CCCCCEEECCCC-CC-CccChhhhhhccc-ccCEEECCCCcCCccChhhccCCCCCCEE
Confidence 45666 566677777652 245777788877 77 666443 33 666 77888887777777764 57777778888
Q ss_pred ecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCc
Q 007656 300 NLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFN 333 (594)
Q Consensus 300 ~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~ 333 (594)
+|++| .+..++.+.+.++++|++|++++|.+..
T Consensus 94 ~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 126 (361)
T 2xot_A 94 DLSSN-HLHTLDEFLFSDLQALEVLLLYNNHIVV 126 (361)
T ss_dssp ECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred ECCCC-cCCcCCHHHhCCCcCCCEEECCCCcccE
Confidence 88777 6777776667777777777777776654
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.38 E-value=3.3e-13 Score=118.15 Aligned_cols=130 Identities=18% Similarity=0.190 Sum_probs=105.1
Q ss_pred CCCCccccccccccccc--ccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccc-cchhhhccC
Q 007656 218 TCPHLHTLFLASNNSLQ--RITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITE-LPEELKLLV 294 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~--~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~-lp~~i~~L~ 294 (594)
..++|+.|++ +++.+. .+|.. +..+++|++|++++| .+ ..+ ..++.+. +|++|++++|.++. +|..++.++
T Consensus 15 ~~~~l~~L~l-~~n~l~~~~~~~~-~~~l~~L~~L~l~~n-~l-~~~-~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 15 TPSDVKELVL-DNSRSNEGKLEGL-TDEFEELEFLSTINV-GL-TSI-ANLPKLN-KLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp CGGGCSEEEC-TTCBCBTTBCCSC-CTTCTTCCEEECTTS-CC-CCC-TTCCCCT-TCCEEECCSSCCCSCTHHHHHHCT
T ss_pred CCccCeEEEc-cCCcCChhHHHHH-HhhcCCCcEEECcCC-CC-CCc-hhhhcCC-CCCEEECCCCcccchHHHHhhhCC
Confidence 3578999999 566676 77764 789999999999999 99 777 6788898 99999999999998 887888899
Q ss_pred cCcEEecCCCCCCCCcch-hhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEE
Q 007656 295 NLKCLNLRWTDTLNKIPR-QLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELT 366 (594)
Q Consensus 295 ~L~~L~L~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 366 (594)
+|++|++++| .++.+|. ..++.+++|++|++++|.+.... ......+..+++|+.|+++
T Consensus 89 ~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~------------~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 89 NLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTNLN------------DYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGGGST------------THHHHHHHHCTTCCEETTB
T ss_pred CCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCcccchH------------HHHHHHHHHCCCcccccCC
Confidence 9999999999 6888752 34899999999999999876511 0112467888888887653
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.38 E-value=2.8e-13 Score=137.34 Aligned_cols=135 Identities=22% Similarity=0.209 Sum_probs=106.5
Q ss_pred CCcccccccccccccccCchhhc-CCCcccEEEccCCcCcccccC-chHHhhhhcCcEEEccCCcccccch-hhhccCcC
Q 007656 220 PHLHTLFLASNNSLQRITDGFFQ-LMPSLKVLKMSNCWNFTLKLP-LAMSELGSSLELLDISYASITELPE-ELKLLVNL 296 (594)
Q Consensus 220 ~~L~~L~L~~~~~l~~l~~~~~~-~l~~L~~L~L~~~~~l~~~lp-~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L 296 (594)
+.++.|+| +++.++.++...|. ++++|++|+|++| .+ ..++ ..+..+. +|++|++++|.++.+|. .+..+++|
T Consensus 39 ~~l~~L~L-s~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i-~~i~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L 114 (361)
T 2xot_A 39 SYTALLDL-SHNNLSRLRAEWTPTRLTNLHSLLLSHN-HL-NFISSEAFVPVP-NLRYLDLSSNHLHTLDEFLFSDLQAL 114 (361)
T ss_dssp TTCSEEEC-CSSCCCEECTTSSSSCCTTCCEEECCSS-CC-CEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCCCEEEC-CCCCCCccChhhhhhcccccCEEECCCC-cC-CccChhhccCCC-CCCEEECCCCcCCcCCHHHhCCCcCC
Confidence 46889999 77788888888777 8999999999999 99 7775 5688898 99999999999998886 68899999
Q ss_pred cEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchh
Q 007656 297 KCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYH 371 (594)
Q Consensus 297 ~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 371 (594)
++|+|++| .+..++...+.++++|++|++++|.+..... .....+..+++|+.|+++.|.+.
T Consensus 115 ~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~------------~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 115 EVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPV------------ELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCG------------GGTC----CTTCCEEECCSSCCC
T ss_pred CEEECCCC-cccEECHHHhCCcccCCEEECCCCcCCeeCH------------HHhcCcccCCcCCEEECCCCCCC
Confidence 99999999 7888866668999999999999998875211 11112256778888887766554
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=6.4e-13 Score=119.93 Aligned_cols=136 Identities=17% Similarity=0.131 Sum_probs=110.9
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchh-hhccCcC
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEE-LKLLVNL 296 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~-i~~L~~L 296 (594)
.+++|+.|++ +++.++.++. +....++|++|++++| .+ ..+ ..+..+. +|++|++++|.++.+|.. +..+++|
T Consensus 17 ~~~~L~~L~l-~~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l-~~~-~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 17 NAVRDRELDL-RGYKIPVIEN-LGATLDQFDAIDFSDN-EI-RKL-DGFPLLR-RLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp CTTSCEEEEC-TTSCCCSCCC-GGGGTTCCSEEECCSS-CC-CEE-CCCCCCS-SCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred CcCCceEEEe-eCCCCchhHH-hhhcCCCCCEEECCCC-CC-Ccc-cccccCC-CCCEEECCCCcccccCcchhhcCCCC
Confidence 7899999999 7778888865 2333449999999999 99 777 5688898 999999999999999865 4999999
Q ss_pred cEEecCCCCCCCCcch-hhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhh
Q 007656 297 KCLNLRWTDTLNKIPR-QLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHA 372 (594)
Q Consensus 297 ~~L~L~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 372 (594)
++|++++| .++.+|. ..+..+++|++|++++|.+.... ......+..+++|+.|+++.+....
T Consensus 91 ~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~------------~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 91 TELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKK------------HYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGST------------THHHHHHHHCTTCSEETTEECCHHH
T ss_pred CEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcH------------hHHHHHHHHCCccceeCCCcCCHHH
Confidence 99999999 7888886 23889999999999999886410 1122347889999999999887644
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.36 E-value=1.8e-12 Score=118.68 Aligned_cols=125 Identities=22% Similarity=0.287 Sum_probs=106.9
Q ss_pred ccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccch-hhhccCcCcEEec
Q 007656 223 HTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPE-ELKLLVNLKCLNL 301 (594)
Q Consensus 223 ~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L~~L~L 301 (594)
+++++ .++.++.+|..+ .++|++|++++| .+ ..+|..+..+. +|++|++++|.|+.++. .|..+++|++|++
T Consensus 13 ~~l~~-~~~~l~~ip~~~---~~~l~~L~L~~n-~i-~~ip~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRC-SNKGLKVLPKGI---PRDVTELYLDGN-QF-TLVPKELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEEC-TTSCCSSCCSCC---CTTCCEEECCSS-CC-CSCCGGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEc-CCCCCCcCCCCC---CCCCCEEECCCC-cC-chhHHHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence 56777 777888998763 368999999999 99 89999999999 99999999999999986 6999999999999
Q ss_pred CCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcch
Q 007656 302 RWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY 370 (594)
Q Consensus 302 ~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 370 (594)
++| .++.++...+.++++|++|++++|.+.... ...+..+++|+.|+++.|.+
T Consensus 86 s~N-~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~---------------~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 86 SYN-RLRCIPPRTFDGLKSLRLLSLHGNDISVVP---------------EGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CSS-CCCBCCTTTTTTCTTCCEEECCSSCCCBCC---------------TTTTTTCTTCCEEECCSSCE
T ss_pred CCC-ccCEeCHHHhCCCCCCCEEECCCCCCCeeC---------------hhhhhcCccccEEEeCCCCe
Confidence 999 789988777999999999999999887522 22377889999999887754
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.32 E-value=1.7e-12 Score=118.79 Aligned_cols=125 Identities=15% Similarity=0.199 Sum_probs=103.9
Q ss_pred ccccccccccccccCchhhcCCCcccEEEccCCcCcccccCch--HHhhhhcCcEEEccCCccccc-chhhhccCcCcEE
Q 007656 223 HTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLA--MSELGSSLELLDISYASITEL-PEELKLLVNLKCL 299 (594)
Q Consensus 223 ~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~--i~~l~~~L~~L~ls~~~l~~l-p~~i~~L~~L~~L 299 (594)
+++++ +++.++.+|..++ .+|++|++++| .+ +.++.. +..+. +|++|++++|.++.+ |..+..+++|++|
T Consensus 11 ~~l~~-s~~~l~~ip~~~~---~~l~~L~l~~n-~i-~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDC-TGRGLKEIPRDIP---LHTTELLLNDN-EL-GRISSDGLFGRLP-HLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEEC-TTSCCSSCCSCCC---TTCSEEECCSC-CC-CSBCCSCSGGGCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CEEEc-CCCCcCcCccCCC---CCCCEEECCCC-cC-CccCCccccccCC-CCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 67888 7778889987632 38999999999 99 777653 88998 999999999999988 5689999999999
Q ss_pred ecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcch
Q 007656 300 NLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY 370 (594)
Q Consensus 300 ~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 370 (594)
++++| .++.++...+.++++|++|++++|.+... .+..+..+++|+.|+++.|.+
T Consensus 84 ~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 84 QLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCV---------------MPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp ECCSC-CCCEECSSSSTTCTTCCEEECCSSCCCEE---------------CTTSSTTCTTCCEEECTTCCB
T ss_pred ECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCee---------------CHHHhhcCCCCCEEEeCCCCc
Confidence 99999 78888876688999999999999988752 344578888999998887654
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.29 E-value=5.4e-12 Score=112.82 Aligned_cols=109 Identities=22% Similarity=0.241 Sum_probs=87.8
Q ss_pred CCCcccEEEccCCcCccc--ccCchHHhhhhcCcEEEccCCcccccchhhhccCcCcEEecCCCCCCCC-cchhhhcCCC
Q 007656 243 LMPSLKVLKMSNCWNFTL--KLPLAMSELGSSLELLDISYASITELPEELKLLVNLKCLNLRWTDTLNK-IPRQLISILS 319 (594)
Q Consensus 243 ~l~~L~~L~L~~~~~l~~--~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~-lp~~~~~~L~ 319 (594)
..++|++|++++| .+ . .+|..+..+. +|++|++++|.++.+ ..+..+++|++|++++| .+.. +|. .+.+++
T Consensus 22 ~~~~L~~L~l~~n-~l-~~~~i~~~~~~l~-~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~ 95 (168)
T 2ell_A 22 TPAAVRELVLDNC-KS-NDGKIEGLTAEFV-NLEFLSLINVGLISV-SNLPKLPKLKKLELSEN-RIFGGLDM-LAEKLP 95 (168)
T ss_dssp CTTSCSEEECCSC-BC-BTTBCSSCCGGGG-GCCEEEEESSCCCCC-SSCCCCSSCCEEEEESC-CCCSCCCH-HHHHCT
T ss_pred CcccCCEEECCCC-CC-ChhhHHHHHHhCC-CCCEEeCcCCCCCCh-hhhccCCCCCEEECcCC-cCchHHHH-HHhhCC
Confidence 4578999999999 88 6 8888888998 999999999999888 67889999999999999 6777 565 477799
Q ss_pred CCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchh
Q 007656 320 WLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYH 371 (594)
Q Consensus 320 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 371 (594)
+|++|++++|.+.... .+..+..+++|+.|+++.|.+.
T Consensus 96 ~L~~L~Ls~N~l~~~~--------------~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 96 NLTHLNLSGNKLKDIS--------------TLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp TCCEEECBSSSCCSSG--------------GGGGGSSCSCCCEEECCSSGGG
T ss_pred CCCEEeccCCccCcch--------------hHHHHhcCCCCCEEEeeCCcCc
Confidence 9999999999876511 2245777777777777766543
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.29 E-value=7.6e-12 Score=133.86 Aligned_cols=124 Identities=20% Similarity=0.218 Sum_probs=92.7
Q ss_pred cccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCcEEecCCCCCCCCcchhhhcCCCCCcEEE
Q 007656 246 SLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLRVLR 325 (594)
Q Consensus 246 ~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~ 325 (594)
.|++|++++| .+ ..+|. ++.+. +|++|++++|.++.+|..++++++|++|+|++| .++.+| . ++++++|++|+
T Consensus 442 ~L~~L~Ls~n-~l-~~lp~-~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~-l~~l~~L~~L~ 514 (567)
T 1dce_A 442 DVRVLHLAHK-DL-TVLCH-LEQLL-LVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-G-VANLPRLQELL 514 (567)
T ss_dssp TCSEEECTTS-CC-SSCCC-GGGGT-TCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-G-GTTCSSCCEEE
T ss_pred CceEEEecCC-CC-CCCcC-ccccc-cCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-c-cCCCCCCcEEE
Confidence 5888888888 88 77876 88888 888888888888888888888888888888888 677888 3 88888888888
Q ss_pred ecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHHh-cCchhhhcceeEE
Q 007656 326 MLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILL-SSNKLKSCIRSLY 390 (594)
Q Consensus 326 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~ 390 (594)
+++|.+.... .+..+.++++|+.|+++.|.+....... .....+++|+.|+
T Consensus 515 Ls~N~l~~~~--------------~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 515 LCNNRLQQSA--------------AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCSSCCCSSS--------------TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCCC--------------CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 8888776510 1566888888888888888775543322 1222344666664
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.28 E-value=8.5e-12 Score=114.19 Aligned_cols=108 Identities=20% Similarity=0.293 Sum_probs=97.5
Q ss_pred CCCcccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccccch-hhhccCcC
Q 007656 219 CPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITELPE-ELKLLVNL 296 (594)
Q Consensus 219 ~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L 296 (594)
.++|++|++ .++.++.+|.. |.++++|++|++++| .+ ..+ +..|..+. +|++|++++|.++.+|. .+..+++|
T Consensus 30 ~~~l~~L~L-~~n~i~~ip~~-~~~l~~L~~L~Ls~N-~i-~~i~~~~f~~l~-~L~~L~Ls~N~l~~i~~~~f~~l~~L 104 (193)
T 2wfh_A 30 PRDVTELYL-DGNQFTLVPKE-LSNYKHLTLIDLSNN-RI-STLSNQSFSNMT-QLLTLILSYNRLRCIPPRTFDGLKSL 104 (193)
T ss_dssp CTTCCEEEC-CSSCCCSCCGG-GGGCTTCCEEECCSS-CC-CCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred CCCCCEEEC-CCCcCchhHHH-hhcccCCCEEECCCC-cC-CEeCHhHccCCC-CCCEEECCCCccCEeCHHHhCCCCCC
Confidence 358999999 78889999954 899999999999999 99 777 45689999 99999999999999986 69999999
Q ss_pred cEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCC
Q 007656 297 KCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWF 332 (594)
Q Consensus 297 ~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~ 332 (594)
++|++++| .+..+|.+.+..+++|+.|++.+|.+.
T Consensus 105 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 105 RLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEEECCCC-CCCeeChhhhhcCccccEEEeCCCCee
Confidence 99999999 799999877999999999999998764
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.26 E-value=1.4e-11 Score=111.18 Aligned_cols=126 Identities=20% Similarity=0.242 Sum_probs=84.0
Q ss_pred cccccccccccccccCchhhcCCCcccEEEccCCcCcccccCc-hHHhhhhcCcEEEccCCcccccch-hhhccCcCcEE
Q 007656 222 LHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPL-AMSELGSSLELLDISYASITELPE-ELKLLVNLKCL 299 (594)
Q Consensus 222 L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~-~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L~~L 299 (594)
.+.+++ .++.++.+|... .++|++|++++| .+ ..+|. .+..+. +|++|++++|.++.+|. .+..+++|++|
T Consensus 9 ~~~l~~-~~~~l~~~p~~~---~~~l~~L~l~~n-~l-~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 9 GTEIRC-NSKGLTSVPTGI---PSSATRLELESN-KL-QSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp TTEEEC-CSSCCSSCCTTC---CTTCSEEECCSS-CC-CCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEEe-cCCCCccCCCCC---CCCCcEEEeCCC-cc-cEeCHHHhcCcc-cccEEECCCCcceEeChhHccCCCccCEE
Confidence 355666 556666676542 357777777777 77 55544 346666 77777777777777765 35777777777
Q ss_pred ecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcch
Q 007656 300 NLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY 370 (594)
Q Consensus 300 ~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 370 (594)
++++| .++.+|...+..+++|++|++++|.+... ....+..+++|+.|+++.|.+
T Consensus 82 ~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~---------------~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 82 YLHEN-KLQSLPNGVFDKLTQLKELALDTNQLKSV---------------PDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC---------------CTTTTTTCTTCCEEECCSSCB
T ss_pred ECCCC-CccccCHHHhhCCcccCEEECcCCcceEe---------------CHHHhcCCcccCEEEecCCCe
Confidence 77777 66777766567777777777777766542 112256677777777776654
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.25 E-value=7.1e-12 Score=113.00 Aligned_cols=113 Identities=18% Similarity=0.159 Sum_probs=94.5
Q ss_pred hcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCcEEecCCCCCCCCcchhhhcCCCC
Q 007656 241 FQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLKCLNLRWTDTLNKIPRQLISILSW 320 (594)
Q Consensus 241 ~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~ 320 (594)
+.++.+|++|++++| .+ ..+|. +..+.++|++|++++|.++.+ ..+..+++|++|++++| .++.+|.+.+..+++
T Consensus 15 ~~~~~~L~~L~l~~n-~l-~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 15 YTNAVRDRELDLRGY-KI-PVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPD 89 (176)
T ss_dssp EECTTSCEEEECTTS-CC-CSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTT
T ss_pred cCCcCCceEEEeeCC-CC-chhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCC
Confidence 678899999999999 99 78865 555544999999999999998 58999999999999999 789999775699999
Q ss_pred CcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhh
Q 007656 321 LRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHA 372 (594)
Q Consensus 321 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 372 (594)
|++|++++|.+.... ....+..+++|+.|+++.|.+..
T Consensus 90 L~~L~L~~N~i~~~~--------------~~~~l~~l~~L~~L~l~~N~i~~ 127 (176)
T 1a9n_A 90 LTELILTNNSLVELG--------------DLDPLASLKSLTYLCILRNPVTN 127 (176)
T ss_dssp CCEEECCSCCCCCGG--------------GGGGGGGCTTCCEEECCSSGGGG
T ss_pred CCEEECCCCcCCcch--------------hhHhhhcCCCCCEEEecCCCCCC
Confidence 999999999886411 12358889999999988776543
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=1.4e-12 Score=120.18 Aligned_cols=118 Identities=22% Similarity=0.262 Sum_probs=101.0
Q ss_pred ccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCcEEecCCCCCCCCcch
Q 007656 233 LQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLKCLNLRWTDTLNKIPR 312 (594)
Q Consensus 233 l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~ 312 (594)
++.+|.. |..+++|++|++++| .+ ..+| .+..+. +|++|++++|.++.+|..+..+++|++|++++| .++.+|.
T Consensus 37 l~~l~~~-~~~l~~L~~L~ls~n-~l-~~l~-~~~~l~-~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~~ 110 (198)
T 1ds9_A 37 IEKMDAT-LSTLKACKHLALSTN-NI-EKIS-SLSGME-NLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLSG 110 (198)
T ss_dssp CCCCHHH-HHHTTTCSEEECSEE-EE-SCCC-CHHHHT-TCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHHH
T ss_pred HhhhhHH-HhcCCCCCEEECCCC-CC-cccc-ccccCC-CCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCCc
Confidence 4445444 889999999999999 99 7888 899999 999999999999999988888999999999999 7888884
Q ss_pred hhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhh
Q 007656 313 QLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHA 372 (594)
Q Consensus 313 ~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 372 (594)
+..+++|++|++++|.+... ..+..+..+++|+.|+++.|....
T Consensus 111 --~~~l~~L~~L~l~~N~i~~~--------------~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 111 --IEKLVNLRVLYMSNNKITNW--------------GEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp --HHHHHHSSEEEESEEECCCH--------------HHHHHHTTTTTCSEEEECSCHHHH
T ss_pred --cccCCCCCEEECCCCcCCch--------------hHHHHHhcCCCCCEEEecCCcccc
Confidence 88999999999999987641 123568899999999999887654
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.24 E-value=9.5e-12 Score=137.37 Aligned_cols=109 Identities=25% Similarity=0.290 Sum_probs=98.4
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLK 297 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~ 297 (594)
.+++|+.|+| +++.+..+|..+ .++++|++|+|++| .+ ..+|..|+.+. +|++|+|++|.|+.+|..+++|++|+
T Consensus 222 ~l~~L~~L~L-s~n~l~~l~~~~-~~l~~L~~L~Ls~N-~l-~~lp~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 222 DDQLWHALDL-SNLQIFNISANI-FKYDFLTRLYLNGN-SL-TELPAEIKNLS-NLRVLDLSHNRLTSLPAELGSCFQLK 296 (727)
T ss_dssp CCCCCCEEEC-TTSCCSCCCGGG-GGCCSCSCCBCTTS-CC-SCCCGGGGGGT-TCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred cCCCCcEEEC-CCCCCCCCChhh-cCCCCCCEEEeeCC-cC-cccChhhhCCC-CCCEEeCcCCcCCccChhhcCCCCCC
Confidence 7889999999 777788898884 48999999999999 99 78999999999 99999999999999999999999999
Q ss_pred EEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCc
Q 007656 298 CLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFN 333 (594)
Q Consensus 298 ~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~ 333 (594)
+|+|++| .++.+|.+ |++|++|++|++++|.+..
T Consensus 297 ~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 297 YFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp EEECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCCS
T ss_pred EEECCCC-CCCccChh-hhcCCCccEEeCCCCccCC
Confidence 9999999 78899987 9999999999999998874
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.23 E-value=5.4e-12 Score=139.34 Aligned_cols=120 Identities=22% Similarity=0.232 Sum_probs=99.9
Q ss_pred cccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCcEEecCCCCCCCC
Q 007656 230 NNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLKCLNLRWTDTLNK 309 (594)
Q Consensus 230 ~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~ 309 (594)
++.+. ++...|..++.|+.|+|++| .+ ..+|..++.+. +|++|+|++|.|+.+|..+++|++|++|+|++| .++.
T Consensus 210 ~n~~~-~~~~~~~~l~~L~~L~Ls~n-~l-~~l~~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~ 284 (727)
T 4b8c_D 210 ENRMV-MPKDSKYDDQLWHALDLSNL-QI-FNISANIFKYD-FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTS 284 (727)
T ss_dssp -------------CCCCCCEEECTTS-CC-SCCCGGGGGCC-SCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSS
T ss_pred cccee-cChhhhccCCCCcEEECCCC-CC-CCCChhhcCCC-CCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCc
Confidence 33443 45555899999999999999 99 89999999999 999999999999999999999999999999999 7889
Q ss_pred cchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchh
Q 007656 310 IPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYH 371 (594)
Q Consensus 310 lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 371 (594)
+|.. +++|++|++|++++|.+.. .+..+++|++|+.|+++.|.+.
T Consensus 285 lp~~-~~~l~~L~~L~L~~N~l~~----------------lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 285 LPAE-LGSCFQLKYFYFFDNMVTT----------------LPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CCSS-GGGGTTCSEEECCSSCCCC----------------CCSSTTSCTTCCCEECTTSCCC
T ss_pred cChh-hcCCCCCCEEECCCCCCCc----------------cChhhhcCCCccEEeCCCCccC
Confidence 9987 9999999999999998764 4455899999999999988764
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.22 E-value=1.3e-11 Score=107.87 Aligned_cols=103 Identities=26% Similarity=0.274 Sum_probs=91.6
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccc-cCchHHhhhhcCcEEEccCCcccccc--hhhhccC
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLK-LPLAMSELGSSLELLDISYASITELP--EELKLLV 294 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~-lp~~i~~l~~~L~~L~ls~~~l~~lp--~~i~~L~ 294 (594)
.+++|+.|++ +++.++.+ ..+..+++|++|++++| .+ .. +|..+..+. +|++|++++|.++.+| ..++.++
T Consensus 40 ~l~~L~~L~l-~~n~l~~~--~~~~~l~~L~~L~Ls~n-~i-~~~~~~~~~~l~-~L~~L~ls~N~i~~~~~~~~~~~l~ 113 (149)
T 2je0_A 40 EFEELEFLST-INVGLTSI--ANLPKLNKLKKLELSDN-RV-SGGLEVLAEKCP-NLTHLNLSGNKIKDLSTIEPLKKLE 113 (149)
T ss_dssp TCTTCCEEEC-TTSCCCCC--TTCCCCTTCCEEECCSS-CC-CSCTHHHHHHCT-TCCEEECTTSCCCSHHHHGGGGGCT
T ss_pred hcCCCcEEEC-cCCCCCCc--hhhhcCCCCCEEECCCC-cc-cchHHHHhhhCC-CCCEEECCCCcCCChHHHHHHhhCC
Confidence 7899999999 67788887 34899999999999999 99 65 788888899 9999999999999876 6899999
Q ss_pred cCcEEecCCCCCCCCcch---hhhcCCCCCcEEEec
Q 007656 295 NLKCLNLRWTDTLNKIPR---QLISILSWLRVLRML 327 (594)
Q Consensus 295 ~L~~L~L~~~~~l~~lp~---~~~~~L~~L~~L~l~ 327 (594)
+|++|++++| .++.+|. ..+..+++|++|+++
T Consensus 114 ~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 114 NLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 9999999999 7888876 558999999999875
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.22 E-value=1.5e-12 Score=119.93 Aligned_cols=134 Identities=25% Similarity=0.278 Sum_probs=108.4
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCc
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLK 297 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~ 297 (594)
.+++|++|++ +++.+..+| .+..+++|++|++++| .+ ..+|..+..++ +|++|++++|.++.+| .+..+++|+
T Consensus 46 ~l~~L~~L~l-s~n~l~~l~--~~~~l~~L~~L~l~~n-~l-~~l~~~~~~~~-~L~~L~L~~N~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 46 TLKACKHLAL-STNNIEKIS--SLSGMENLRILSLGRN-LI-KKIENLDAVAD-TLEELWISYNQIASLS-GIEKLVNLR 118 (198)
T ss_dssp HTTTCSEEEC-SEEEESCCC--CHHHHTTCCEEEEEEE-EE-CSCSSHHHHHH-HCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred cCCCCCEEEC-CCCCCcccc--ccccCCCCCEEECCCC-Cc-ccccchhhcCC-cCCEEECcCCcCCcCC-ccccCCCCC
Confidence 6899999999 777888888 3899999999999999 99 89999888888 9999999999999998 799999999
Q ss_pred EEecCCCCCCCCcch-hhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEE
Q 007656 298 CLNLRWTDTLNKIPR-QLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLE 364 (594)
Q Consensus 298 ~L~L~~~~~l~~lp~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 364 (594)
+|++++| .+..+|. ..+..+++|++|++++|.+....... ..........+..+++|+.|+
T Consensus 119 ~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-----~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 119 VLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN-----NATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT-----TTHHHHHHHHHHHCSSCSEEC
T ss_pred EEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccc-----cchHHHHHHHHHhCCCcEEEC
Confidence 9999999 7888775 34889999999999999775410000 000011223477888888876
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.22 E-value=3.7e-11 Score=108.38 Aligned_cols=110 Identities=25% Similarity=0.364 Sum_probs=97.9
Q ss_pred CCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCch-HHhhhhcCcEEEccCCcccccch-hhhccCcC
Q 007656 219 CPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLA-MSELGSSLELLDISYASITELPE-ELKLLVNL 296 (594)
Q Consensus 219 ~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~-i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L 296 (594)
.++|+.|++ .++.++.++...|..+++|++|++++| .+ ..+|.. +..+. +|++|++++|.++.+|. .+..+++|
T Consensus 27 ~~~l~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l-~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L 102 (177)
T 2o6r_A 27 PSSATRLEL-ESNKLQSLPHGVFDKLTQLTKLSLSQN-QI-QSLPDGVFDKLT-KLTILYLHENKLQSLPNGVFDKLTQL 102 (177)
T ss_dssp CTTCSEEEC-CSSCCCCCCTTTTTTCTTCSEEECCSS-CC-CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCcEEEe-CCCcccEeCHHHhcCcccccEEECCCC-cc-eEeChhHccCCC-ccCEEECCCCCccccCHHHhhCCccc
Confidence 468999999 777788999887899999999999999 99 777654 68888 99999999999999987 47899999
Q ss_pred cEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCc
Q 007656 297 KCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFN 333 (594)
Q Consensus 297 ~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~ 333 (594)
++|++++| .++.+|.+.+..+++|++|++++|.+..
T Consensus 103 ~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 103 KELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeec
Confidence 99999999 7899998767899999999999998753
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.21 E-value=2.8e-11 Score=120.96 Aligned_cols=98 Identities=15% Similarity=0.068 Sum_probs=48.7
Q ss_pred ccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCcccc--ccccCCCCc-eEeEccCccchhhhc
Q 007656 409 LNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDVT--FLIFAPNLK-SLDLSYCSSMEEVIS 485 (594)
Q Consensus 409 ~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~-~L~L~~~~~l~~~~~ 485 (594)
+++|+.|++.+|. +..++...+. .+.+|+.|+|.++ ++.++ .+..+++|+ .|.+.+ .++.+..
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~~aF~---------~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~ 290 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPDFTFA---------QKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF 290 (329)
T ss_dssp CTTCCEEECTTBC-CCEECTTTTT---------TCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT
T ss_pred cCCCeEEECCCCC-cceecHhhhh---------CCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch
Confidence 4566666666543 3333333332 4556666666552 55554 355666666 666654 3333322
Q ss_pred cCccCCCCcccCCCccccccceecccccccccccCCCCc-cCCCccEE
Q 007656 486 VGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKPL-PFTHLKEI 532 (594)
Q Consensus 486 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~-~l~~L~~L 532 (594)
..+..+++|+.|++.+. +++.++.... .+++|+.+
T Consensus 291 -----------~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 291 -----------GAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp -----------TTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEE
T ss_pred -----------hhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhh
Confidence 24555566666665443 4555544322 24444443
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.21 E-value=4.3e-11 Score=119.57 Aligned_cols=251 Identities=14% Similarity=0.070 Sum_probs=154.0
Q ss_pred CCCccccccccccccc--ccCchhhcCCCcccEEEccCCcCcccccCchHHh--------hhhcCcEEEccCCcccccch
Q 007656 219 CPHLHTLFLASNNSLQ--RITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSE--------LGSSLELLDISYASITELPE 288 (594)
Q Consensus 219 ~~~L~~L~L~~~~~l~--~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~--------l~~~L~~L~ls~~~l~~lp~ 288 (594)
+++|++|+| +++.+. ..+. +.++.++.+.+..+ .+ . +..|.. +. +|+.|++.+ .++.++.
T Consensus 48 l~~L~~LdL-s~n~i~~~~~~~---~~~~~~~~~~~~~~-~I-~--~~aF~~~~~~~~~g~~-~L~~l~L~~-~i~~I~~ 117 (329)
T 3sb4_A 48 FPSLKVLDI-SNAEIKMYSGKA---GTYPNGKFYIYMAN-FV-P--AYAFSNVVNGVTKGKQ-TLEKVILSE-KIKNIED 117 (329)
T ss_dssp CTTCCEEEE-EEEEECCEEESS---SSSGGGCCEEECTT-EE-C--TTTTEEEETTEEEECT-TCCC-CBCT-TCCEECT
T ss_pred hccCeEEec-CcceeEEecCcc---cccccccccccccc-cc-C--HHHhcccccccccccC-CCcEEECCc-cccchhH
Confidence 689999999 666676 2222 23333555555555 33 1 233445 67 888888888 7888876
Q ss_pred -hhhccCcCcEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCC----CccccCC-CC------ccccCCcccchH----
Q 007656 289 -ELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGW----FNFLEAP-ED------SVLFGGGEVLIQ---- 352 (594)
Q Consensus 289 -~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~----~~~~~~~-~~------~~~~~~~~~~~~---- 352 (594)
.|..|++|+.|++.+| .+..++.+.|.++.++..+....... ..+.... .. .+.-........
T Consensus 118 ~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~ 196 (329)
T 3sb4_A 118 AAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMK 196 (329)
T ss_dssp TTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHH
T ss_pred HHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhh
Confidence 6888888888888888 67778777777777666665543111 0000000 00 000000000111
Q ss_pred HhcCCCCCcEEEEEEcch-hhHHHHhcCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeeccc
Q 007656 353 ELLGLKYLEVLELTLGSY-HALQILLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYT 431 (594)
Q Consensus 353 ~l~~L~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~ 431 (594)
.-....++..+.+...-. .....+. ..+++|+.++|..+.+.. + ....|.++++|++|++.++ +..+....+
T Consensus 197 ~~~~~~~~~~l~~~~~l~~~~~~~l~---~~~~~L~~l~L~~n~i~~-I-~~~aF~~~~~L~~l~l~~n--i~~I~~~aF 269 (329)
T 3sb4_A 197 AGLQPRDINFLTIEGKLDNADFKLIR---DYMPNLVSLDISKTNATT-I-PDFTFAQKKYLLKIKLPHN--LKTIGQRVF 269 (329)
T ss_dssp TTCCGGGCSEEEEEECCCHHHHHHHH---HHCTTCCEEECTTBCCCE-E-CTTTTTTCTTCCEEECCTT--CCEECTTTT
T ss_pred cccCccccceEEEeeeecHHHHHHHH---HhcCCCeEEECCCCCcce-e-cHhhhhCCCCCCEEECCcc--cceehHHHh
Confidence 111234445555553321 1111111 235689999995444555 4 4457999999999999985 666666665
Q ss_pred ccccccCCCccCCCcc-eEeEecCCCCcccc--ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCcccccccee
Q 007656 432 EIVRKRREPFVFRSLH-CVRIEQCHKLKDVT--FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSL 508 (594)
Q Consensus 432 ~~~~~~~~~~~~~~L~-~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L 508 (594)
. .+++|+ .+.+.+ .++.++ .+..+++|+.|++.++ .++.+.. ..+..+++|+.+
T Consensus 270 ~---------~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~-----------~aF~~~~~L~~l 326 (329)
T 3sb4_A 270 S---------NCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLGD-----------ELFGNGVPSKLI 326 (329)
T ss_dssp T---------TCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEECT-----------TTTCTTCCCCEE
T ss_pred h---------CChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC-ccCccch-----------hhhcCCcchhhh
Confidence 4 789999 999987 677776 5889999999999877 6666654 356778888877
Q ss_pred cc
Q 007656 509 HL 510 (594)
Q Consensus 509 ~L 510 (594)
+.
T Consensus 327 y~ 328 (329)
T 3sb4_A 327 YK 328 (329)
T ss_dssp EC
T ss_pred cc
Confidence 53
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.21 E-value=2e-11 Score=111.66 Aligned_cols=109 Identities=23% Similarity=0.301 Sum_probs=96.1
Q ss_pred CCcccccccccccccccCch-hhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccccch-hhhccCcC
Q 007656 220 PHLHTLFLASNNSLQRITDG-FFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITELPE-ELKLLVNL 296 (594)
Q Consensus 220 ~~L~~L~L~~~~~l~~l~~~-~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L 296 (594)
+++++|++ .++.++.++.. +|..+++|++|++++| .+ ..+ |..+..+. +|++|++++|.++.++. .+..+++|
T Consensus 29 ~~l~~L~l-~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l-~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L 104 (192)
T 1w8a_A 29 LHTTELLL-NDNELGRISSDGLFGRLPHLVKLELKRN-QL-TGIEPNAFEGAS-HIQELQLGENKIKEISNKMFLGLHQL 104 (192)
T ss_dssp TTCSEEEC-CSCCCCSBCCSCSGGGCTTCCEEECCSS-CC-CCBCTTTTTTCT-TCCEEECCSCCCCEECSSSSTTCTTC
T ss_pred CCCCEEEC-CCCcCCccCCccccccCCCCCEEECCCC-CC-CCcCHhHcCCcc-cCCEEECCCCcCCccCHHHhcCCCCC
Confidence 48999999 77788888864 5899999999999999 99 655 78899999 99999999999999886 58999999
Q ss_pred cEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCc
Q 007656 297 KCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFN 333 (594)
Q Consensus 297 ~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~ 333 (594)
++|++++| .++.++...+..+++|++|++++|.+..
T Consensus 105 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 105 KTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 99999999 7787755559999999999999998753
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.17 E-value=5.2e-11 Score=106.53 Aligned_cols=104 Identities=28% Similarity=0.357 Sum_probs=81.4
Q ss_pred CcccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccccchh-hhccCcCcE
Q 007656 221 HLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITELPEE-LKLLVNLKC 298 (594)
Q Consensus 221 ~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~lp~~-i~~L~~L~~ 298 (594)
..+.+++ +++.++.+|..+ .++|++|++++| .+ ..+ |..+..+. +|++|++++|.|+.+|.. +..+++|++
T Consensus 10 ~~~~l~~-s~n~l~~ip~~~---~~~l~~L~L~~N-~i-~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 10 SGTTVDC-SGKSLASVPTGI---PTTTQVLYLYDN-QI-TKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp ETTEEEC-TTSCCSSCCSCC---CTTCSEEECCSS-CC-CCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCEEEe-CCCCcCccCccC---CCCCcEEEcCCC-cC-CccChhhhcCcc-cCCEEECCCCCcCccChhhccCCCCCCE
Confidence 3567788 677788888753 377888888888 88 666 66678888 888888888888888774 578888888
Q ss_pred EecCCCCCCCCcchhhhcCCCCCcEEEecCCCCC
Q 007656 299 LNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWF 332 (594)
Q Consensus 299 L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~ 332 (594)
|+|++| .++.+|.+.+.++++|++|++++|.+.
T Consensus 83 L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 83 LSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EECCCC-ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 888888 678888766888888888888888764
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.17 E-value=5.7e-11 Score=106.64 Aligned_cols=103 Identities=23% Similarity=0.297 Sum_probs=84.3
Q ss_pred cccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccccchh-hhccCcCcEE
Q 007656 222 LHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITELPEE-LKLLVNLKCL 299 (594)
Q Consensus 222 L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~lp~~-i~~L~~L~~L 299 (594)
-+.+++ +++.++.+|..+ .++|++|++++| .+ ..+ |..+..+. +|++|++++|.|+.+|.. +.++++|++|
T Consensus 14 ~~~l~~-~~n~l~~iP~~~---~~~L~~L~Ls~N-~l-~~~~~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 14 QTLVNC-QNIRLASVPAGI---PTDKQRLWLNNN-QI-TKLEPGVFDHLV-NLQQLYFNSNKLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp SSEEEC-CSSCCSSCCSCC---CTTCSEEECCSS-CC-CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CcEEEe-CCCCCCccCCCc---CCCCcEEEeCCC-Cc-cccCHHHhcCCc-CCCEEECCCCCCCccChhHhCCcchhhEE
Confidence 366777 777788888763 278899999999 88 666 66788888 999999999999888874 5788999999
Q ss_pred ecCCCCCCCCcchhhhcCCCCCcEEEecCCCCC
Q 007656 300 NLRWTDTLNKIPRQLISILSWLRVLRMLGTGWF 332 (594)
Q Consensus 300 ~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~ 332 (594)
+|++| .+..+|.+.+..+++|++|++++|.+.
T Consensus 87 ~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 87 DLNDN-HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ECCCC-ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 99988 788888776888899999999888765
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.12 E-value=2.2e-09 Score=109.62 Aligned_cols=257 Identities=13% Similarity=0.114 Sum_probs=145.8
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccch-hhhccCcC
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPE-ELKLLVNL 296 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L 296 (594)
.+..++.+.+ . +.++.++..+|.++ +|+.+.+..+ + ..++.....-. +|+.+.+.. .++.++. .|.+|.+|
T Consensus 111 ~~~~l~~i~i-p-~~i~~I~~~aF~~~-~L~~i~l~~~--i-~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L 182 (401)
T 4fdw_A 111 ILKGYNEIIL-P-NSVKSIPKDAFRNS-QIAKVVLNEG--L-KSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNL 182 (401)
T ss_dssp ECSSCSEEEC-C-TTCCEECTTTTTTC-CCSEEECCTT--C-CEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTC
T ss_pred ecCCccEEEE-C-CccCEehHhhcccC-CccEEEeCCC--c-cEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccC
Confidence 3566666666 2 34667777777764 6777777654 5 56644333335 777777765 5666664 67777788
Q ss_pred cEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHH
Q 007656 297 KCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQIL 376 (594)
Q Consensus 297 ~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 376 (594)
+.+++..| .+..+|.+.|. .++|+.+.+..+ .... ....+.++++|+.+.+..+
T Consensus 183 ~~l~l~~n-~l~~I~~~aF~-~~~L~~l~lp~~-l~~I---------------~~~aF~~~~~L~~l~l~~~-------- 236 (401)
T 4fdw_A 183 KKADLSKT-KITKLPASTFV-YAGIEEVLLPVT-LKEI---------------GSQAFLKTSQLKTIEIPEN-------- 236 (401)
T ss_dssp CEEECTTS-CCSEECTTTTT-TCCCSEEECCTT-CCEE---------------CTTTTTTCTTCCCEECCTT--------
T ss_pred CeeecCCC-cceEechhhEe-ecccCEEEeCCc-hhee---------------hhhHhhCCCCCCEEecCCC--------
Confidence 88888777 67777776565 477777777643 2221 2223666666666655411
Q ss_pred hcCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCC
Q 007656 377 LSSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHK 456 (594)
Q Consensus 377 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~ 456 (594)
++ . + ....|.+ .+|+.+.+.. .+..+....+. .+++|+.+.+.++..
T Consensus 237 ---------l~----------~-I-~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~---------~c~~L~~l~l~~~~~ 283 (401)
T 4fdw_A 237 ---------VS----------T-I-GQEAFRE-SGITTVKLPN--GVTNIASRAFY---------YCPELAEVTTYGSTF 283 (401)
T ss_dssp ---------CC----------E-E-CTTTTTT-CCCSEEEEET--TCCEECTTTTT---------TCTTCCEEEEESSCC
T ss_pred ---------cc----------C-c-ccccccc-CCccEEEeCC--CccEEChhHhh---------CCCCCCEEEeCCccc
Confidence 10 0 1 1123444 4566666632 23434344433 566677776665321
Q ss_pred C----cccc--ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCCCCc-cCCCc
Q 007656 457 L----KDVT--FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKPL-PFTHL 529 (594)
Q Consensus 457 l----~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~-~l~~L 529 (594)
. ..++ .+..+++|+.+.|.+ .++.+.. ..+..+++|+.+.|.. +++.+..... .+ +|
T Consensus 284 ~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~-----------~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L 347 (401)
T 4fdw_A 284 NDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQ-----------GLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GI 347 (401)
T ss_dssp CCCTTCEECTTTTTTCTTCCEECCCT--TCCEECT-----------TTTTTCCSCCEEEECT--TCCEECTTSSSSS-CC
T ss_pred cCCcccEECHHHhhCCccCCeEEeCC--ceEEEhh-----------hhhcCCCCccEEEECc--cccEEcHHhCCCC-CC
Confidence 1 1233 366677777777763 2444433 2556667777777743 4666655444 34 77
Q ss_pred cEEeecccCCCCCCCCCCcC---CcCcceEEE
Q 007656 530 KEISVGYCRNLKKLPLDSNS---AKERKFVIR 558 (594)
Q Consensus 530 ~~L~i~~C~~L~~lp~~~~~---~~L~~l~I~ 558 (594)
+.+.+.+. .+..++..... .++..+.+-
T Consensus 348 ~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 348 KEVKVEGT-TPPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp CEEEECCS-SCCBCCCSSCCCSCTTCCEEEEC
T ss_pred CEEEEcCC-CCcccccccccCCCCCccEEEeC
Confidence 77777764 44555544322 345566665
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.08 E-value=6e-09 Score=106.46 Aligned_cols=222 Identities=14% Similarity=0.115 Sum_probs=156.2
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccccchhhhccCcC
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITELPEELKLLVNL 296 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L 296 (594)
+| +|+.+.+ .++ ++.++..+|.++ +|+.+.+.. .+ ..+ +..|..+. +|+.++++.|.++.+|...-.+.+|
T Consensus 134 ~~-~L~~i~l-~~~-i~~I~~~aF~~~-~L~~i~lp~--~l-~~I~~~aF~~c~-~L~~l~l~~n~l~~I~~~aF~~~~L 205 (401)
T 4fdw_A 134 NS-QIAKVVL-NEG-LKSIGDMAFFNS-TVQEIVFPS--TL-EQLKEDIFYYCY-NLKKADLSKTKITKLPASTFVYAGI 205 (401)
T ss_dssp TC-CCSEEEC-CTT-CCEECTTTTTTC-CCCEEECCT--TC-CEECSSTTTTCT-TCCEEECTTSCCSEECTTTTTTCCC
T ss_pred cC-CccEEEe-CCC-ccEECHHhcCCC-CceEEEeCC--Cc-cEehHHHhhCcc-cCCeeecCCCcceEechhhEeeccc
Confidence 55 6888888 433 888998888885 699999985 46 666 45677888 9999999999999998844447899
Q ss_pred cEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHHHH
Q 007656 297 KCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQIL 376 (594)
Q Consensus 297 ~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 376 (594)
+.+.+..+ +..++...|.++++|+.+.+..+ .... ....+.+ .+|+.+.+.
T Consensus 206 ~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I---------------~~~aF~~-~~L~~i~lp---------- 256 (401)
T 4fdw_A 206 EEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTI---------------GQEAFRE-SGITTVKLP---------- 256 (401)
T ss_dssp SEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEE---------------CTTTTTT-CCCSEEEEE----------
T ss_pred CEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCc---------------ccccccc-CCccEEEeC----------
Confidence 99999854 78898888999999999998764 2221 1112333 456655553
Q ss_pred hcCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCc----eeeeecccccccccCCCccCCCcceEeEe
Q 007656 377 LSSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIEL----EELKIDYTEIVRKRREPFVFRSLHCVRIE 452 (594)
Q Consensus 377 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~----~~l~~~~~~~~~~~~~~~~~~~L~~L~L~ 452 (594)
+.+.. + ....|.++++|+.+.+.++... ..+....+. .+++|+.+.|.
T Consensus 257 -----------------~~i~~-I-~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~---------~c~~L~~l~l~ 308 (401)
T 4fdw_A 257 -----------------NGVTN-I-ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE---------GCPKLARFEIP 308 (401)
T ss_dssp -----------------TTCCE-E-CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT---------TCTTCCEECCC
T ss_pred -----------------CCccE-E-ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh---------CCccCCeEEeC
Confidence 11111 2 2347888999999999875432 123444443 78899999998
Q ss_pred cCCCCcccc--ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCC
Q 007656 453 QCHKLKDVT--FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYW 521 (594)
Q Consensus 453 ~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~ 521 (594)
+ .++.++ .+..+++|+.|.|..+ ++.+.. ..+..+ +|+.+.+.++ .+..+..
T Consensus 309 ~--~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~-----------~aF~~~-~L~~l~l~~n-~~~~l~~ 362 (401)
T 4fdw_A 309 E--SIRILGQGLLGGNRKVTQLTIPAN--VTQINF-----------SAFNNT-GIKEVKVEGT-TPPQVFE 362 (401)
T ss_dssp T--TCCEECTTTTTTCCSCCEEEECTT--CCEECT-----------TSSSSS-CCCEEEECCS-SCCBCCC
T ss_pred C--ceEEEhhhhhcCCCCccEEEECcc--ccEEcH-----------HhCCCC-CCCEEEEcCC-CCccccc
Confidence 5 477776 4888899999999654 555533 356677 8999999876 4444443
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.06 E-value=3.2e-10 Score=101.37 Aligned_cols=104 Identities=19% Similarity=0.189 Sum_probs=90.4
Q ss_pred cccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccc-hhhhccCcCcEEecCCCCCCCCcchhhhcCCCCCcEE
Q 007656 246 SLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELP-EELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLRVL 324 (594)
Q Consensus 246 ~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~~L 324 (594)
..+.++++++ .+ ..+|..+. . +|++|++++|.|+.++ ..+.++++|++|++++| .+..+|.+.+.++++|++|
T Consensus 10 ~~~~l~~s~n-~l-~~ip~~~~--~-~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 10 SGTTVDCSGK-SL-ASVPTGIP--T-TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp ETTEEECTTS-CC-SSCCSCCC--T-TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEEeCCC-Cc-CccCccCC--C-CCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEE
Confidence 4578999999 99 89998764 5 9999999999999995 47999999999999999 7999998878999999999
Q ss_pred EecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcch
Q 007656 325 RMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY 370 (594)
Q Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 370 (594)
++++|.+... ....+.++++|+.|+++.|.+
T Consensus 84 ~L~~N~l~~~---------------~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 84 SLNDNQLKSI---------------PRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp ECCSSCCCCC---------------CTTTTTTCTTCCEEECCSSCB
T ss_pred ECCCCccCEe---------------CHHHhcCCCCCCEEEeCCCCC
Confidence 9999998762 223478899999999998865
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.05 E-value=3.8e-10 Score=101.20 Aligned_cols=104 Identities=20% Similarity=0.216 Sum_probs=90.1
Q ss_pred ccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccc-hhhhccCcCcEEecCCCCCCCCcchhhhcCCCCCcEEE
Q 007656 247 LKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELP-EELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLRVLR 325 (594)
Q Consensus 247 L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~ 325 (594)
-+.++++++ .+ +.+|..+. . +|++|++++|.++.++ ..+.++++|++|+|++| .++.+|.+.+.++++|++|+
T Consensus 14 ~~~l~~~~n-~l-~~iP~~~~--~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 14 QTLVNCQNI-RL-ASVPAGIP--T-DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLD 87 (174)
T ss_dssp SSEEECCSS-CC-SSCCSCCC--T-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CcEEEeCCC-CC-CccCCCcC--C-CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEE
Confidence 378999999 99 99998765 5 9999999999999995 48999999999999999 89999988789999999999
Q ss_pred ecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchh
Q 007656 326 MLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYH 371 (594)
Q Consensus 326 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 371 (594)
+++|.+... ....+..+++|+.|+++.|.+.
T Consensus 88 L~~N~l~~l---------------~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 88 LNDNHLKSI---------------PRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCSSCCCCC---------------CTTTTTTCTTCSEEECCSSCBC
T ss_pred CCCCcccee---------------CHHHhccccCCCEEEeCCCCcc
Confidence 999998752 1223788999999999987653
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.89 E-value=2.7e-09 Score=107.33 Aligned_cols=102 Identities=21% Similarity=0.269 Sum_probs=87.2
Q ss_pred cccccccccccccCchhhcCCCcccEEEccC-CcCcccccC-chHHhhhhcCcEEEccCCcccccch-hhhccCcCcEEe
Q 007656 224 TLFLASNNSLQRITDGFFQLMPSLKVLKMSN-CWNFTLKLP-LAMSELGSSLELLDISYASITELPE-ELKLLVNLKCLN 300 (594)
Q Consensus 224 ~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~-~~~l~~~lp-~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L~~L~ 300 (594)
.+++++++.++.+|. +..+++|++|+|++ | .+ ..+| ..|..+. +|++|+|++|.|+.+|. .|.+|++|++|+
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n-~l-~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQ-HL-QHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCSCS-SC-CEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccCCC-CC-CCcChhHhcccc-CCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence 457734448999998 89999999999996 8 89 7775 6788999 99999999999998876 789999999999
Q ss_pred cCCCCCCCCcchhhhcCCCCCcEEEecCCCCC
Q 007656 301 LRWTDTLNKIPRQLISILSWLRVLRMLGTGWF 332 (594)
Q Consensus 301 L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~ 332 (594)
|++| .+..+|.+.+..++ |+.|++.+|.+.
T Consensus 87 l~~N-~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 87 LSFN-ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSS-CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCCC-ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 9999 78999987666666 999999998775
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.68 E-value=1.4e-07 Score=96.37 Aligned_cols=284 Identities=14% Similarity=0.128 Sum_probs=155.8
Q ss_pred CCCCceEEEeeCCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccC-chHHhhhhcCcEEEccCC----
Q 007656 207 PTNFDCVIWVPTCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLP-LAMSELGSSLELLDISYA---- 281 (594)
Q Consensus 207 ~~~f~~~~w~p~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp-~~i~~l~~~L~~L~ls~~---- 281 (594)
...|. +|.+|+.+.+ . +.++.++..+|.++.+|+.+++.++ + ..++ ..+..+. +|+.+.+..+
T Consensus 64 ~~AF~------~c~~L~~i~l-p-~~i~~I~~~aF~~c~~L~~i~lp~~--l-~~I~~~aF~~c~-~L~~i~~p~~l~~i 131 (394)
T 4fs7_A 64 YAAFQ------GCRKVTEIKI-P-STVREIGEFAFENCSKLEIINIPDS--V-KMIGRCTFSGCY-ALKSILLPLMLKSI 131 (394)
T ss_dssp TTTTT------TCTTEEEEEC-C-TTCCEECTTTTTTCTTCCEECCCTT--C-CEECTTTTTTCT-TCCCCCCCTTCCEE
T ss_pred HHHhh------CCCCceEEEe-C-CCccCcchhHhhCCCCCcEEEeCCC--c-eEccchhhcccc-cchhhcccCceeee
Confidence 35676 7888888888 3 3478888888888888888888654 4 4553 3455555 6665554332
Q ss_pred -----------------cccccch-hhhccCcCcEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccc
Q 007656 282 -----------------SITELPE-ELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVL 343 (594)
Q Consensus 282 -----------------~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 343 (594)
.+..+.. .+.++.+|+.+.+..+ +..++.+.+.++++|+.+.+..+-. ..
T Consensus 132 ~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~~~-~I--------- 199 (394)
T 4fs7_A 132 GVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRNLK-II--------- 199 (394)
T ss_dssp CTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTTCC-EE---------
T ss_pred cceeeecccccccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCCce-Ee---------
Confidence 1111221 3566677777777654 4566666677777777776654411 10
Q ss_pred cCCcccchHHhcCCCCCcEEEEEEcchhhHHHHhcCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCc
Q 007656 344 FGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIEL 423 (594)
Q Consensus 344 ~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 423 (594)
....+.++..|+.+.+..+... +.. .......|+.+.+.- .... + ....+..+.+|+.+.+..+ .
T Consensus 200 ------~~~~F~~~~~L~~i~~~~~~~~-i~~---~~~~~~~l~~i~ip~-~~~~-i-~~~~f~~~~~l~~~~~~~~--~ 264 (394)
T 4fs7_A 200 ------RDYCFAECILLENMEFPNSLYY-LGD---FALSKTGVKNIIIPD-SFTE-L-GKSVFYGCTDLESISIQNN--K 264 (394)
T ss_dssp ------CTTTTTTCTTCCBCCCCTTCCE-ECT---TTTTTCCCCEEEECT-TCCE-E-CSSTTTTCSSCCEEEECCT--T
T ss_pred ------CchhhccccccceeecCCCceE-eeh---hhcccCCCceEEECC-Ccee-c-ccccccccccceeEEcCCC--c
Confidence 1122444555554443311110 000 011123566666511 1111 1 2235667777887777653 2
Q ss_pred eeeeecccccccccCCCccCCCcceEeEecCCCCcccc--ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCcc
Q 007656 424 EELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDVT--FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISP 501 (594)
Q Consensus 424 ~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (594)
..+....+. .+..++.+..... .++ .+..+.+|+.+.+.++ ++.+.. ..+..
T Consensus 265 ~~i~~~~F~---------~~~~l~~~~~~~~----~i~~~~F~~~~~L~~i~l~~~--i~~I~~-----------~aF~~ 318 (394)
T 4fs7_A 265 LRIGGSLFY---------NCSGLKKVIYGSV----IVPEKTFYGCSSLTEVKLLDS--VKFIGE-----------EAFES 318 (394)
T ss_dssp CEECSCTTT---------TCTTCCEEEECSS----EECTTTTTTCTTCCEEEECTT--CCEECT-----------TTTTT
T ss_pred ceeeccccc---------cccccceeccCce----eeccccccccccccccccccc--cceech-----------hhhcC
Confidence 222333322 4566666655431 122 3556677777777543 444432 24566
Q ss_pred ccccceecccccccccccCCCCc-cCCCccEEeecccCCCCCCCCCCcC--CcCcceEEEc
Q 007656 502 FENLQSLHLSQLPALKSIYWKPL-PFTHLKEISVGYCRNLKKLPLDSNS--AKERKFVIRG 559 (594)
Q Consensus 502 l~~L~~L~L~~~~~L~~l~~~~~-~l~~L~~L~i~~C~~L~~lp~~~~~--~~L~~l~I~~ 559 (594)
+++|+.+.|.. +++.|..... .+++|+.+.+.. +++.++..... .+|+.+.+..
T Consensus 319 c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 319 CTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred CCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 77788877753 4666655443 467777777753 36666655443 6777777753
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.67 E-value=4.8e-09 Score=106.11 Aligned_cols=135 Identities=15% Similarity=0.110 Sum_probs=78.6
Q ss_pred CCCcccccccccccccccCchhhc-----CCCcccEEEccCCcCccccc-CchH-HhhhhcCcEEEccCCcccccch-h-
Q 007656 219 CPHLHTLFLASNNSLQRITDGFFQ-----LMPSLKVLKMSNCWNFTLKL-PLAM-SELGSSLELLDISYASITELPE-E- 289 (594)
Q Consensus 219 ~~~L~~L~L~~~~~l~~l~~~~~~-----~l~~L~~L~L~~~~~l~~~l-p~~i-~~l~~~L~~L~ls~~~l~~lp~-~- 289 (594)
.++|+.|++ +++.++......+. ..++|++|+|++| .+ +.. ...+ ..+. +|++|++++|.++.... .
T Consensus 71 ~~~L~~L~L-s~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l-~~~~~~~l~~~L~-~L~~L~Ls~n~l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNL-AGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QL-DPAGLRTLLPVFL-RARKLGLQLNSLGPEACKDL 146 (372)
T ss_dssp HTTCCEEEC-TTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CC-CHHHHHHTHHHHH-TEEEEECCSSCCCHHHHHHH
T ss_pred HhhCCEEEe-cCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CC-CHHHHHHHHHHHH-hccHhhcCCCCCCHHHHHHH
Confidence 456777788 55555543333222 2367888888888 67 321 2222 3455 78888888887764332 2
Q ss_pred ---h-hccCcCcEEecCCCCCCCC-----cchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCC
Q 007656 290 ---L-KLLVNLKCLNLRWTDTLNK-----IPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYL 360 (594)
Q Consensus 290 ---i-~~L~~L~~L~L~~~~~l~~-----lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 360 (594)
+ ...++|++|+|++| .++. ++.. +..+++|++|++++|.+.... .......+...++|
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~-L~~~~~L~~L~Ls~N~l~~~g-----------~~~L~~~L~~~~~L 213 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEG-LAGNTSVTHLSLLHTGLGDEG-----------LELLAAQLDRNRQL 213 (372)
T ss_dssp HHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHH-HHTCSSCCEEECTTSSCHHHH-----------HHHHHHHGGGCSCC
T ss_pred HHHHHhcCCccceeeCCCC-CCChHHHHHHHHH-HhcCCCcCEEeCCCCCCCcHH-----------HHHHHHHHhcCCCc
Confidence 2 23567888888887 5544 2222 456777888888877765311 01134455666667
Q ss_pred cEEEEEEcch
Q 007656 361 EVLELTLGSY 370 (594)
Q Consensus 361 ~~L~l~~~~~ 370 (594)
+.|+++.|.+
T Consensus 214 ~~L~Ls~N~i 223 (372)
T 3un9_A 214 QELNVAYNGA 223 (372)
T ss_dssp CEEECCSSCC
T ss_pred CeEECCCCCC
Confidence 7777666554
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.61 E-value=9.5e-09 Score=103.89 Aligned_cols=113 Identities=14% Similarity=0.167 Sum_probs=78.2
Q ss_pred CCcccEEEccCCcCccccc-CchHHhh-----hhcCcEEEccCCccccc--chhhhccCcCcEEecCCCCCCCCcchhhh
Q 007656 244 MPSLKVLKMSNCWNFTLKL-PLAMSEL-----GSSLELLDISYASITEL--PEELKLLVNLKCLNLRWTDTLNKIPRQLI 315 (594)
Q Consensus 244 l~~L~~L~L~~~~~l~~~l-p~~i~~l-----~~~L~~L~ls~~~l~~l--p~~i~~L~~L~~L~L~~~~~l~~lp~~~~ 315 (594)
+++|++|++++| .+ +.. ...+... . +|++|++++|.++.- ..-...+.+|++|+|++| .++......+
T Consensus 71 ~~~L~~L~Ls~n-~l-~~~~~~~l~~~L~~~~~-~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNLAGV-RM-TPVKCTVVAAVLGSGRH-ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDL 146 (372)
T ss_dssp HTTCCEEECTTS-CC-CHHHHHHHHHHHSSCSS-CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHH
T ss_pred HhhCCEEEecCC-CC-CHHHHHHHHHHHhhCCC-CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHH
Confidence 468999999999 88 433 3344444 5 899999999988642 223345678999999999 6665443223
Q ss_pred -----cCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchh
Q 007656 316 -----SILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYH 371 (594)
Q Consensus 316 -----~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 371 (594)
...++|++|++++|.+.... .......+..+++|+.|+++.|.+.
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~l~~~~-----------~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNPLTAAG-----------VAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSCCHHHH-----------HHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred HHHHHhcCCccceeeCCCCCCChHH-----------HHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 35688999999999875411 1124455677888888888877654
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.58 E-value=7.6e-08 Score=96.62 Aligned_cols=89 Identities=18% Similarity=0.193 Sum_probs=76.2
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCccccc-CchHHhhhhcCcEEEccCCcccccchhhhccCcC
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKL-PLAMSELGSSLELLDISYASITELPEELKLLVNL 296 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~l-p~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L 296 (594)
.+++|+.|+|+++|.++.++...|.++++|++|+|++| .| ..+ |..|..+. +|++|+|++|.|+.+|..+....+|
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l-~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~~~L 105 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GL-RFVAPDAFHFTP-RLSRLNLSFNALESLSWKTVQGLSL 105 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CC-CEECTTGGGSCS-CCCEEECCSSCCSCCCSTTTCSCCC
T ss_pred CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-cc-ceeCHHHhcCCc-CCCEEeCCCCccceeCHHHcccCCc
Confidence 78899999994459999999888999999999999999 99 666 56789999 9999999999999999855444459
Q ss_pred cEEecCCCCCCCCc
Q 007656 297 KCLNLRWTDTLNKI 310 (594)
Q Consensus 297 ~~L~L~~~~~l~~l 310 (594)
+.|+|.+| .+...
T Consensus 106 ~~l~l~~N-~~~c~ 118 (347)
T 2ifg_A 106 QELVLSGN-PLHCS 118 (347)
T ss_dssp CEEECCSS-CCCCC
T ss_pred eEEEeeCC-CccCC
Confidence 99999999 55543
No 149
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.56 E-value=5.1e-08 Score=104.13 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=51.0
Q ss_pred CceechhHHHHHHHHHHhcC---CceEEEEEecCCCchhHHHHHHHH--hhccCCCCCceEEEe
Q 007656 158 PTIVGLQSQLEQVWRCLVEE---SVGIIGLYGMGGVGKTTLLTHINN--KFLESPTNFDCVIWV 216 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~---~~~~i~i~G~gG~gKttl~~~~~~--~~~~~~~~f~~~~w~ 216 (594)
+..|||+.++++|.++|..+ ++++|+|+||||+||||||+.+|+ +. .+..+|+.++|+
T Consensus 128 ~~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv 190 (549)
T 2a5y_B 128 MTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWL 190 (549)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEE
T ss_pred CccCCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEE
Confidence 33369999999999999764 789999999999999999999998 33 457899999999
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.43 E-value=5.4e-07 Score=90.31 Aligned_cols=169 Identities=18% Similarity=0.144 Sum_probs=83.3
Q ss_pred CchHHhhhhcCcEEEccCCcc----------cccchhhhccCcCcEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCC
Q 007656 263 PLAMSELGSSLELLDISYASI----------TELPEELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWF 332 (594)
Q Consensus 263 p~~i~~l~~~L~~L~ls~~~l----------~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~ 332 (594)
..++..++ +|+.|.+..... ..++..+..+++|+.|++++|.. ..++. +. +++|++|++..|.+.
T Consensus 132 ~~s~~~l~-~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~-l~l~~--~~-~~~L~~L~L~~~~l~ 206 (362)
T 2ra8_A 132 VENKEKFA-HFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN-LSIGK--KP-RPNLKSLEIISGGLP 206 (362)
T ss_dssp HTTHHHHT-TCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT-CBCCS--CB-CTTCSEEEEECSBCC
T ss_pred HHhhhhcc-hhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC-ceecc--cc-CCCCcEEEEecCCCC
Confidence 33445555 666665543311 13444556677777777776622 23443 32 677777777766653
Q ss_pred ccccCCCCccccCCcccchHHhc--CCCCCcEEEEEEcchhhHHHHhcCchhhhcceeEEEEeCCCcccccccccccCcc
Q 007656 333 NFLEAPEDSVLFGGGEVLIQELL--GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLN 410 (594)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 410 (594)
. .....+. .+++|+.|+++.+..... +...... +........++
T Consensus 207 ~---------------~~l~~l~~~~lp~L~~L~L~~~~~~~~------------------~~~~~~~-l~~~l~~~~~p 252 (362)
T 2ra8_A 207 D---------------SVVEDILGSDLPNLEKLVLYVGVEDYG------------------FDGDMNV-FRPLFSKDRFP 252 (362)
T ss_dssp H---------------HHHHHHHHSBCTTCCEEEEECBCGGGT------------------CCSCGGG-TGGGSCTTTCT
T ss_pred h---------------HHHHHHHHccCCCCcEEEEeccccccc------------------cchhHHH-HHHHHhcCCCC
Confidence 2 1233333 567777776653211000 0000000 10111113457
Q ss_pred CCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCcc-----cc-ccccCCCCceEeEccCc
Q 007656 411 QLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKD-----VT-FLIFAPNLKSLDLSYCS 478 (594)
Q Consensus 411 ~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~-----l~-~l~~l~~L~~L~L~~~~ 478 (594)
+|+.|.+.+|.........+.. ...+++|+.|+|+. +.+.+ ++ .+..+++|+.|+|++|.
T Consensus 253 ~Lr~L~L~~~~i~~~~~~~la~-------a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 253 NLKWLGIVDAEEQNVVVEMFLE-------SDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TCCEEEEESCTTHHHHHHHHHH-------CSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CcCEEeCCCCCCchHHHHHHHh-------CccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 7777777776544311111111 02466777777765 34544 12 24556777777777663
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.40 E-value=1.9e-06 Score=87.95 Aligned_cols=264 Identities=17% Similarity=0.167 Sum_probs=161.9
Q ss_pred CCCCceEEEeeCCCCcccccccccccccccCchhhcCCCcccEEEccCCc-----------Ccc--------ccc-CchH
Q 007656 207 PTNFDCVIWVPTCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCW-----------NFT--------LKL-PLAM 266 (594)
Q Consensus 207 ~~~f~~~~w~p~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~-----------~l~--------~~l-p~~i 266 (594)
...|. +|++|+.+++ .+ .++.++..+|.++..|+.+.+..+- .+. ..+ ...+
T Consensus 87 ~~aF~------~c~~L~~i~l-p~-~l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF 158 (394)
T 4fs7_A 87 EFAFE------NCSKLEIINI-PD-SVKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEGVTVIGDEAF 158 (394)
T ss_dssp TTTTT------TCTTCCEECC-CT-TCCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTCCEECTTTT
T ss_pred hhHhh------CCCCCcEEEe-CC-CceEccchhhcccccchhhcccCceeeecceeeecccccccccCccccccchhhh
Confidence 45677 8999999999 33 3778888888888888776654320 000 111 2346
Q ss_pred HhhhhcCcEEEccCCcccccch-hhhccCcCcEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccC
Q 007656 267 SELGSSLELLDISYASITELPE-ELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFG 345 (594)
Q Consensus 267 ~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 345 (594)
..+. +|+.+.+..+ +..++. .+.++.+|+.+.+..+ ++.++...+.++..|+.+.+..+....
T Consensus 159 ~~c~-~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~~i------------ 222 (394)
T 4fs7_A 159 ATCE-SLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLYYL------------ 222 (394)
T ss_dssp TTCT-TCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCCEE------------
T ss_pred cccC-CCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCceEe------------
Confidence 6777 9999999765 456665 6888999999999876 688888778999999988876543321
Q ss_pred CcccchHHhcCCCCCcEEEEEEcchhhHHHHhcCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCcee
Q 007656 346 GGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEE 425 (594)
Q Consensus 346 ~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 425 (594)
........+|+.+.+.... ..+.. .....+..++.+.+..+... + ....+..+..++.+......
T Consensus 223 -----~~~~~~~~~l~~i~ip~~~-~~i~~--~~f~~~~~l~~~~~~~~~~~--i-~~~~F~~~~~l~~~~~~~~~---- 287 (394)
T 4fs7_A 223 -----GDFALSKTGVKNIIIPDSF-TELGK--SVFYGCTDLESISIQNNKLR--I-GGSLFYNCSGLKKVIYGSVI---- 287 (394)
T ss_dssp -----CTTTTTTCCCCEEEECTTC-CEECS--STTTTCSSCCEEEECCTTCE--E-CSCTTTTCTTCCEEEECSSE----
T ss_pred -----ehhhcccCCCceEEECCCc-eeccc--ccccccccceeEEcCCCcce--e-eccccccccccceeccCcee----
Confidence 1112334566666554211 00000 01122335666666222111 1 22356677777777665421
Q ss_pred eeecccccccccCCCccCCCcceEeEecCCCCcccc--ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCcccc
Q 007656 426 LKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDVT--FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFE 503 (594)
Q Consensus 426 l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 503 (594)
++...+ ..+.+|+.+.+.. .++.++ .+..+++|+.++|.++ ++.+.. ..+..++
T Consensus 288 i~~~~F---------~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~-----------~aF~~c~ 343 (394)
T 4fs7_A 288 VPEKTF---------YGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPYL--VEEIGK-----------RSFRGCT 343 (394)
T ss_dssp ECTTTT---------TTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCTT--CCEECT-----------TTTTTCT
T ss_pred eccccc---------ccccccccccccc--ccceechhhhcCCCCCCEEEeCCc--ccEEhH-----------HhccCCC
Confidence 122222 3577888888865 466665 4777888888888543 444433 2566778
Q ss_pred ccceecccccccccccCCCCc-cCCCccEEeec
Q 007656 504 NLQSLHLSQLPALKSIYWKPL-PFTHLKEISVG 535 (594)
Q Consensus 504 ~L~~L~L~~~~~L~~l~~~~~-~l~~L~~L~i~ 535 (594)
+|+.+.|.. +++.|..... .+++|+.+.+.
T Consensus 344 ~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 344 SLSNINFPL--SLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred CCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence 888888854 4666665443 46777777764
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.35 E-value=7.2e-06 Score=83.66 Aligned_cols=291 Identities=12% Similarity=0.142 Sum_probs=161.1
Q ss_pred CCC-CcccccccccccccccCchhhcCCCcccEEEccCC--cCcccccC-chHHhhhhcCcEEEccCCcccccch-hhhc
Q 007656 218 TCP-HLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNC--WNFTLKLP-LAMSELGSSLELLDISYASITELPE-ELKL 292 (594)
Q Consensus 218 ~~~-~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~--~~l~~~lp-~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~ 292 (594)
+|. .|+.+.+ - ..++.++..+|.++.+|+.+.+..+ ..+ ..++ .+|..+. +|+.+.+..+ ++.++. .+..
T Consensus 61 ~~~~~L~sI~i-P-~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l-~~Ig~~aF~~c~-~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 61 NYKYVLTSVQI-P-DTVTEIGSNAFYNCTSLKRVTIQDNKPSCV-KKIGRQAFMFCS-ELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TCCSCCCEEEE-C-TTCCEECTTTTTTCTTCCEEEEGGGCCCCC-CEECTTTTTTCT-TCCBCGGGTT-CSEECTTTTTT
T ss_pred CCCCcCEEEEE-C-CCeeEEhHHHhhCCccCceEeecCCCCCee-eEechhhchhcc-cceeeccCCc-cceehhhhhhh
Confidence 664 5888888 3 3478888888999999999988765 125 5553 4556666 8887776554 666665 6788
Q ss_pred cCcCcEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchh-
Q 007656 293 LVNLKCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYH- 371 (594)
Q Consensus 293 L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~- 371 (594)
+.+|+.+.+..+ +..++...+..+.+|+.+.+..+-. .. ....+. ..+|+.+.+...-..
T Consensus 136 c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~~~-~I---------------~~~aF~-~~~l~~i~ip~~~~~i 196 (394)
T 4gt6_A 136 CEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDSVT-AI---------------EERAFT-GTALTQIHIPAKVTRI 196 (394)
T ss_dssp CTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTTCC-EE---------------CTTTTT-TCCCSEEEECTTCCEE
T ss_pred hcccccccccce--eeeecccceecccccccccccceee-Ee---------------cccccc-ccceeEEEECCccccc
Confidence 888999988754 5777777788888999888865422 11 011122 245776665421110
Q ss_pred hHHHHhcCchhhhcceeEEEEeCCCcccccc------------cccccCccCCceEEecccCCceeeeecccccccccCC
Q 007656 372 ALQILLSSNKLKSCIRSLYLHLTGDTASIID------------ATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRRE 439 (594)
Q Consensus 372 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~------------~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~ 439 (594)
....+ ..+..+............ ... .........+..+.+. ..+..+....+
T Consensus 197 ~~~af----~~c~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip--~~v~~i~~~aF-------- 261 (394)
T 4gt6_A 197 GTNAF----SECFALSTITSDSESYPA-IDNVLYEKSANGDYALIRYPSQREDPAFKIP--NGVARIETHAF-------- 261 (394)
T ss_dssp CTTTT----TTCTTCCEEEECCSSSCB-SSSCEEEECTTSCEEEEECCTTCCCSEEECC--TTEEEECTTTT--------
T ss_pred ccchh----hhccccceeccccccccc-ccceeecccccccccccccccccccceEEcC--CcceEccccee--------
Confidence 00001 111233333331111111 000 0001111122222221 11222212222
Q ss_pred CccCCCcceEeEecCCCCcccc--ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceeccccccccc
Q 007656 440 PFVFRSLHCVRIEQCHKLKDVT--FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALK 517 (594)
Q Consensus 440 ~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~ 517 (594)
..+.+|+.+.+.+ .+..+. .+.++++|+.+.+.. .++.++. ..+..+++|+.+.|.. +++
T Consensus 262 -~~c~~L~~i~lp~--~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~-----------~aF~~c~~L~~i~lp~--~v~ 323 (394)
T 4gt6_A 262 -DSCAYLASVKMPD--SVVSIGTGAFMNCPALQDIEFSS--RITELPE-----------SVFAGCISLKSIDIPE--GIT 323 (394)
T ss_dssp -TTCSSCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECT-----------TTTTTCTTCCEEECCT--TCC
T ss_pred -eecccccEEeccc--ccceecCcccccccccccccCCC--cccccCc-----------eeecCCCCcCEEEeCC--ccc
Confidence 3566777777754 233343 366677787777743 3444433 2566677888888753 466
Q ss_pred ccCCCCc-cCCCccEEeecccCCCCCCCCCCcC--CcCcceEEEccHhhhhhc
Q 007656 518 SIYWKPL-PFTHLKEISVGYCRNLKKLPLDSNS--AKERKFVIRGEEDWWNRL 567 (594)
Q Consensus 518 ~l~~~~~-~l~~L~~L~i~~C~~L~~lp~~~~~--~~L~~l~I~~~~~~~~~l 567 (594)
.|..... .+.+|+.+.|-. +++.++..... .+|+.+.+.+....++.+
T Consensus 324 ~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~~~~~~ 374 (394)
T 4gt6_A 324 QILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRSQWNAI 374 (394)
T ss_dssp EECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHHHHHTC
T ss_pred EehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCceeehhhh
Confidence 6665444 467788887753 46666654433 678888777765555443
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.33 E-value=2.6e-07 Score=81.43 Aligned_cols=39 Identities=10% Similarity=0.058 Sum_probs=18.3
Q ss_pred ccceecccccccccccCCC-CccCCCccEEeecccCCCCC
Q 007656 504 NLQSLHLSQLPALKSIYWK-PLPFTHLKEISVGYCRNLKK 542 (594)
Q Consensus 504 ~L~~L~L~~~~~L~~l~~~-~~~l~~L~~L~i~~C~~L~~ 542 (594)
+|+.|+|++|+++++-... ...+++|+.|++++|+.++.
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 4555555555444442221 11345555555555555544
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.33 E-value=2.5e-07 Score=81.51 Aligned_cols=89 Identities=18% Similarity=0.294 Sum_probs=56.8
Q ss_pred cCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCcccc--ccccC----CCCceEeEccCccchhh
Q 007656 410 NQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDVT--FLIFA----PNLKSLDLSYCSSMEEV 483 (594)
Q Consensus 410 ~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l----~~L~~L~L~~~~~l~~~ 483 (594)
.+|++|++++|. +++.....+ ..+++|++|+|++|..+++-. .+..+ ++|++|+|++|..+++-
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L---------~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHM---------EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGG---------TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred ceEeEEeCcCCC-ccHHHHHHh---------cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 467788888776 332222222 357778888888887776632 34443 46888888888776664
Q ss_pred hccCccCCCCcccCCCccccccceeccccccccccc
Q 007656 484 ISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSI 519 (594)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l 519 (594)
.- ..+..+++|+.|+|++|+.+++.
T Consensus 131 Gl-----------~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 131 GI-----------IALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HH-----------HHGGGCTTCCEEEEESCTTCCCH
T ss_pred HH-----------HHHhcCCCCCEEECCCCCCCCch
Confidence 22 14556788888888888777653
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.30 E-value=6.3e-06 Score=84.07 Aligned_cols=269 Identities=13% Similarity=0.184 Sum_probs=166.6
Q ss_pred CCCCceEEEeeCCCCccccccccc--ccccccCchhhcCCCcccEEEccCCcCcccccC-chHHhhhhcCcEEEccCCcc
Q 007656 207 PTNFDCVIWVPTCPHLHTLFLASN--NSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLP-LAMSELGSSLELLDISYASI 283 (594)
Q Consensus 207 ~~~f~~~~w~p~~~~L~~L~L~~~--~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp-~~i~~l~~~L~~L~ls~~~l 283 (594)
...|. +|.+|+.+.+..+ ..++.++..+|.++.+|+.+.+..+ + ..++ ..+..+. +|+.+.+..+ +
T Consensus 80 ~~AF~------~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~-~~I~~~aF~~c~-~L~~i~lp~~-~ 148 (394)
T 4gt6_A 80 SNAFY------NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--V-TEIDSEAFHHCE-ELDTVTIPEG-V 148 (394)
T ss_dssp TTTTT------TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--C-SEECTTTTTTCT-TCCEEECCTT-C
T ss_pred HHHhh------CCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--c-ceehhhhhhhhc-ccccccccce-e
Confidence 34576 8999999999443 3588899999999999998887664 4 5564 4566777 9999999754 5
Q ss_pred cccch-hhhccCcCcEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcE
Q 007656 284 TELPE-ELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEV 362 (594)
Q Consensus 284 ~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 362 (594)
..++. .+..+.+|+.+.+..+ +..+....+.. .+|+.+.+..+-... ....+..+.++..
T Consensus 149 ~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~~~~~i----------------~~~af~~c~~l~~ 209 (394)
T 4gt6_A 149 TSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPAKVTRI----------------GTNAFSECFALST 209 (394)
T ss_dssp CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECTTCCEE----------------CTTTTTTCTTCCE
T ss_pred eeecccceecccccccccccce--eeEeccccccc-cceeEEEECCccccc----------------ccchhhhccccce
Confidence 56655 6888999999999765 67787765654 678888886543221 1222455556665
Q ss_pred EEEEEcchhhHHHHhcCch-----------hhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeeccc
Q 007656 363 LELTLGSYHALQILLSSNK-----------LKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYT 431 (594)
Q Consensus 363 L~l~~~~~~~~~~~~~~~~-----------~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~ 431 (594)
................... ....+..+.+. +.... + ....|.++.+|+.+.+... ...+....+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~-i-~~~aF~~c~~L~~i~lp~~--~~~I~~~aF 284 (394)
T 4gt6_A 210 ITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVAR-I-ETHAFDSCAYLASVKMPDS--VVSIGTGAF 284 (394)
T ss_dssp EEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEE-E-CTTTTTTCSSCCEEECCTT--CCEECTTTT
T ss_pred ecccccccccccceeecccccccccccccccccccceEEcC-CcceE-c-ccceeeecccccEEecccc--cceecCccc
Confidence 5443222111110000000 00011111110 01111 1 2236778888888888652 233333333
Q ss_pred ccccccCCCccCCCcceEeEecCCCCcccc--ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceec
Q 007656 432 EIVRKRREPFVFRSLHCVRIEQCHKLKDVT--FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLH 509 (594)
Q Consensus 432 ~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 509 (594)
..+++|+.+.+.. .++.++ .+..+.+|+.+.|..+ ++.+.. ..+..+.+|+.+.
T Consensus 285 ---------~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~-----------~aF~~C~~L~~i~ 340 (394)
T 4gt6_A 285 ---------MNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILD-----------DAFAGCEQLERIA 340 (394)
T ss_dssp ---------TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECT-----------TTTTTCTTCCEEE
T ss_pred ---------ccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehH-----------hHhhCCCCCCEEE
Confidence 3678888888864 566666 4778889999988653 444433 3567788888888
Q ss_pred ccccccccccCCCCc-cCCCccEEeecc
Q 007656 510 LSQLPALKSIYWKPL-PFTHLKEISVGY 536 (594)
Q Consensus 510 L~~~~~L~~l~~~~~-~l~~L~~L~i~~ 536 (594)
|-. +++.|..... .+++|+.+.+.+
T Consensus 341 ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 341 IPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp ECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred ECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 853 4666665433 477888887764
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.13 E-value=3.9e-06 Score=83.99 Aligned_cols=83 Identities=18% Similarity=0.095 Sum_probs=55.7
Q ss_pred hcCCCcccEEEccCCcCc---------ccccCchHHhhhhcCcEEEccCCcccccchhhhccCcCcEEecCCCCCCCCcc
Q 007656 241 FQLMPSLKVLKMSNCWNF---------TLKLPLAMSELGSSLELLDISYASITELPEELKLLVNLKCLNLRWTDTLNKIP 311 (594)
Q Consensus 241 ~~~l~~L~~L~L~~~~~l---------~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp 311 (594)
...+++|+.|.+.+. .. .+.++..+..++ +|+.|++++|.-..+|. + .+++|++|++..| .+..-.
T Consensus 135 ~~~l~~L~~L~l~~~-~~e~~~is~~~~~~L~~ll~~~P-~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~-~l~~~~ 209 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDI-DFEEQEISWIEQVDLSPVLDAMP-LLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISG-GLPDSV 209 (362)
T ss_dssp HHHHTTCSEEEECCC-CTTTCCGGGCBCCBCHHHHHTCT-TCCEEEEECCBTCBCCS-C-BCTTCSEEEEECS-BCCHHH
T ss_pred hhhcchhhheeecCc-chhhcccccccccCHHHHHhcCC-CCcEEEEeCCCCceecc-c-cCCCCcEEEEecC-CCChHH
Confidence 456789999988654 22 023445556667 99999999883234554 4 3889999999887 443222
Q ss_pred hhhhc--CCCCCcEEEecC
Q 007656 312 RQLIS--ILSWLRVLRMLG 328 (594)
Q Consensus 312 ~~~~~--~L~~L~~L~l~~ 328 (594)
-..+. .+++|++|+++.
T Consensus 210 l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp HHHHHHSBCTTCCEEEEEC
T ss_pred HHHHHHccCCCCcEEEEec
Confidence 11233 789999999864
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.09 E-value=3.9e-05 Score=77.67 Aligned_cols=103 Identities=19% Similarity=0.201 Sum_probs=54.9
Q ss_pred cccCccCCceEEecccCCceeeeecccccccccCCCccCCCcceEeEecCCCCcccc--ccccCCCCceEeEccCccchh
Q 007656 405 VFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSLHCVRIEQCHKLKDVT--FLIFAPNLKSLDLSYCSSMEE 482 (594)
Q Consensus 405 ~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~ 482 (594)
.+.++.+|+.+.+..+ +..+....+ ..+.+|+.+.+.. .+..++ .+..+++|+.+.+.++ .++.
T Consensus 235 ~f~~~~~L~~i~lp~~--v~~I~~~aF---------~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~-~i~~ 300 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN--VTSIGSFLL---------QNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNS-AIET 300 (379)
T ss_dssp TTTTCSSCCEEEECTT--CCEECTTTT---------TTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCT-TCCE
T ss_pred cccCCccceEEEcCCC--ccEeCcccc---------ceeehhccccccc--cceecccccccccccccccccccc-ccce
Confidence 4555666666666542 333333332 2566677777654 355554 3666777777777654 3444
Q ss_pred hhccCccCCCCcccCCCccccccceecccccccccccCCCCc-cCCCccEEee
Q 007656 483 VISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKPL-PFTHLKEISV 534 (594)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~-~l~~L~~L~i 534 (594)
+.. ..+..+++|+.+.|-. +++.|..... .+++|+.+.+
T Consensus 301 I~~-----------~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 301 LEP-----------RVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp ECT-----------TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred ehh-----------hhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 432 2455666777777642 3555544332 2444554444
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.07 E-value=5.9e-06 Score=78.42 Aligned_cols=86 Identities=19% Similarity=0.127 Sum_probs=56.2
Q ss_pred HhhhhcCcEEEccCCcccccc---hhhhccCcCcEEecCCCCCCCCcchhhhcCCC--CCcEEEecCCCCCccccCCCCc
Q 007656 267 SELGSSLELLDISYASITELP---EELKLLVNLKCLNLRWTDTLNKIPRQLISILS--WLRVLRMLGTGWFNFLEAPEDS 341 (594)
Q Consensus 267 ~~l~~~L~~L~ls~~~l~~lp---~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~--~L~~L~l~~~~~~~~~~~~~~~ 341 (594)
..++ +|++|+|++|.|+.++ ..+..+++|+.|+|++| .+..+.. +..++ +|++|++.+|.+... ++
T Consensus 167 ~~l~-~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~l~L~~L~L~~Npl~~~-~~---- 237 (267)
T 3rw6_A 167 ENIP-ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERE--LDKIKGLKLEELWLDGNSLCDT-FR---- 237 (267)
T ss_dssp HHCT-TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGG--GGGGTTSCCSEEECTTSTTGGG-CS----
T ss_pred hhCC-CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchh--hhhcccCCcceEEccCCcCccc-cC----
Confidence 3455 8888888888777654 45677888888888888 6776643 44444 788888888876531 00
Q ss_pred cccCCcccchHHhcCCCCCcEEE
Q 007656 342 VLFGGGEVLIQELLGLKYLEVLE 364 (594)
Q Consensus 342 ~~~~~~~~~~~~l~~L~~L~~L~ 364 (594)
.........+..+++|+.|+
T Consensus 238 ---~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 238 ---DQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp ---SHHHHHHHHHHHCTTCCEES
T ss_pred ---cchhHHHHHHHHCcccCeEC
Confidence 00122345566777777775
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.01 E-value=5.1e-06 Score=74.88 Aligned_cols=58 Identities=17% Similarity=0.152 Sum_probs=28.3
Q ss_pred hcCCCcccEEEccCCcCcccc-----cCchHHhhhhcCcEEEccCCcccc-----cchhhhccCcCcEEec
Q 007656 241 FQLMPSLKVLKMSNCWNFTLK-----LPLAMSELGSSLELLDISYASITE-----LPEELKLLVNLKCLNL 301 (594)
Q Consensus 241 ~~~l~~L~~L~L~~~~~l~~~-----lp~~i~~l~~~L~~L~ls~~~l~~-----lp~~i~~L~~L~~L~L 301 (594)
+...++|++|+|++| .+ +. +...+.... +|++|+|++|.|.. +...+...++|++|++
T Consensus 61 L~~~~~L~~L~Ls~n-~i-~~~g~~~l~~~L~~n~-~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 61 LKTNTYVKKFSIVGT-RS-NDPVAFALAEMLKVNN-TLKSLNVESNFISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp HTTCCSCCEEECTTS-CC-CHHHHHHHHHHHHHCS-SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred HHhCCCcCEEECcCC-CC-ChHHHHHHHHHHHhCC-CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEe
Confidence 344555666666666 55 22 222333334 55555555555542 2334444455555555
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.98 E-value=4.9e-06 Score=74.95 Aligned_cols=119 Identities=17% Similarity=0.091 Sum_probs=85.4
Q ss_pred hhcCCCcccEEEccCCcCcc----cccCchHHhhhhcCcEEEccCCcccc-----cchhhhccCcCcEEecCCCCCCCC-
Q 007656 240 FFQLMPSLKVLKMSNCWNFT----LKLPLAMSELGSSLELLDISYASITE-----LPEELKLLVNLKCLNLRWTDTLNK- 309 (594)
Q Consensus 240 ~~~~l~~L~~L~L~~~~~l~----~~lp~~i~~l~~~L~~L~ls~~~l~~-----lp~~i~~L~~L~~L~L~~~~~l~~- 309 (594)
++...+.|++|+|++|..+. ..+...+.... +|++|+|++|.|.. +...+...++|++|+|++| .++.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~-~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~ 108 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNT-YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGS 108 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCC-SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCC-CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHH
Confidence 36778999999999873441 12334455556 89999999998873 4456777789999999999 6665
Q ss_pred ----cchhhhcCCCCCcEEEe--cCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhh
Q 007656 310 ----IPRQLISILSWLRVLRM--LGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHA 372 (594)
Q Consensus 310 ----lp~~~~~~L~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 372 (594)
+... +...++|++|++ .+|.+.... .......+...++|+.|+++.|.+..
T Consensus 109 g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g-----------~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 109 GILALVEA-LQSNTSLIELRIDNQSQPLGNNV-----------EMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHHG-GGGCSSCCEEECCCCSSCCCHHH-----------HHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHH-HHhCCCceEEEecCCCCCCCHHH-----------HHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 2332 667789999999 778776411 11245567777899999999887654
No 161
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.96 E-value=2.9e-06 Score=93.72 Aligned_cols=58 Identities=17% Similarity=0.278 Sum_probs=50.4
Q ss_pred CceechhHHHHHHHHHHhc-CCceEEEEEecCCCchhHHHHHHHHhhccCCCCCce-EEEe
Q 007656 158 PTIVGLQSQLEQVWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDC-VIWV 216 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~-~~~~~i~i~G~gG~gKttl~~~~~~~~~~~~~~f~~-~~w~ 216 (594)
+..|||+..++++.++|.. +..++|+|+||||+||||||+.+|++. ++...|+. ++|+
T Consensus 128 k~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WV 187 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWL 187 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEE
T ss_pred CCCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEE
Confidence 3349999999999999987 678999999999999999999999864 34677886 8898
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.95 E-value=2.7e-06 Score=80.82 Aligned_cols=83 Identities=18% Similarity=0.179 Sum_probs=65.8
Q ss_pred hcCCCcccEEEccCCcCcccc---cCchHHhhhhcCcEEEccCCcccccchhhhccC--cCcEEecCCCCCCCCcch---
Q 007656 241 FQLMPSLKVLKMSNCWNFTLK---LPLAMSELGSSLELLDISYASITELPEELKLLV--NLKCLNLRWTDTLNKIPR--- 312 (594)
Q Consensus 241 ~~~l~~L~~L~L~~~~~l~~~---lp~~i~~l~~~L~~L~ls~~~l~~lp~~i~~L~--~L~~L~L~~~~~l~~lp~--- 312 (594)
..++++|+.|+|++| .+ .. +|..+..++ +|++|+|++|.|+.+. .+..+. +|++|+|++|+....+|.
T Consensus 166 ~~~l~~L~~L~Ls~N-~l-~~l~~l~~~~~~l~-~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 166 EENIPELLSLNLSNN-RL-YRLDDMSSIVQKAP-NLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp HHHCTTCCEEECTTS-CC-CCCGGGTTHHHHST-TCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHH
T ss_pred HhhCCCCCEEECCCC-CC-CCCccchhHHhhCC-CCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchh
Confidence 357899999999999 88 54 457778898 9999999999999884 455555 999999999964344542
Q ss_pred ---hhhcCCCCCcEEEec
Q 007656 313 ---QLISILSWLRVLRML 327 (594)
Q Consensus 313 ---~~~~~L~~L~~L~l~ 327 (594)
.++..+++|+.|+-.
T Consensus 242 y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 242 YISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHHCTTCCEESSC
T ss_pred HHHHHHHHCcccCeECCc
Confidence 347789999998754
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.82 E-value=0.00018 Score=72.80 Aligned_cols=281 Identities=11% Similarity=0.067 Sum_probs=156.7
Q ss_pred CCCCcccccccccccccccCchhhcCCCcccEEEccCCcCcccccCchHHhhhhcCcEEEccCCcccccch-hhhccCcC
Q 007656 218 TCPHLHTLFLASNNSLQRITDGFFQLMPSLKVLKMSNCWNFTLKLPLAMSELGSSLELLDISYASITELPE-ELKLLVNL 296 (594)
Q Consensus 218 ~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~L~~~~~l~~~lp~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L 296 (594)
...+|+.+.+ ...++.++..+|.++.+|+.+.|..+ + ..++.....-. +|+.+.+..+ ++.++. .+.. .+|
T Consensus 44 ~~~~i~~v~i--p~~vt~Ig~~aF~~C~~L~~I~lp~~--v-~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L 115 (379)
T 4h09_A 44 DRDRISEVRV--NSGITSIGEANFNSCYNMTKVTVAST--V-TSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDL 115 (379)
T ss_dssp GGGGCSEEEE--CTTEEEECTTTTTTCTTCCEEEECTT--C-CEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCC
T ss_pred cccCCEEEEe--CCCccChHHHHhhCCCCCCEEEeCCc--c-eEechhhhcCC-CCceEECCce-eeEeccceecc-CCc
Confidence 5677888887 34588899988999999999999654 6 66755444445 6777777543 666665 3443 478
Q ss_pred cEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCCCccccCCCCccccCCcccchHHhcCCCCCcEEEEEEcchhhHH-H
Q 007656 297 KCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQ-I 375 (594)
Q Consensus 297 ~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~-~ 375 (594)
+.+.+..+ +..+....+.+. +|+.+.+..+-... ....+..+.++..+.+......... .
T Consensus 116 ~~i~lp~~--~~~i~~~~F~~~-~l~~~~~~~~v~~i----------------~~~~f~~~~~l~~~~~~~~~~~~~~~~ 176 (379)
T 4h09_A 116 DDFEFPGA--TTEIGNYIFYNS-SVKRIVIPKSVTTI----------------KDGIGYKAENLEKIEVSSNNKNYVAEN 176 (379)
T ss_dssp SEEECCTT--CCEECTTTTTTC-CCCEEEECTTCCEE----------------CSCTTTTCTTCCEEEECTTCSSEEEET
T ss_pred ccccCCCc--cccccccccccc-eeeeeeccceeecc----------------ccchhcccccccccccccccceeeccc
Confidence 88888765 566666545544 56666655431110 1112445555655544321110000 0
Q ss_pred Hh---------cCchhhhcceeEEEEeCCCcccccccccccCccCCceEEecccCCceeeeecccccccccCCCccCCCc
Q 007656 376 LL---------SSNKLKSCIRSLYLHLTGDTASIIDATVFADLNQLNQLWIDEGIELEELKIDYTEIVRKRREPFVFRSL 446 (594)
Q Consensus 376 ~~---------~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L 446 (594)
.. ........+..+.+. ..... . ....+..+.+|+.+.+... +..+....+ ..+.+|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-i-~~~~f~~~~~l~~i~~~~~--~~~i~~~~f---------~~~~~L 242 (379)
T 4h09_A 177 YVLYNKNKTILESYPAAKTGTEFTIP-STVKT-V-TAYGFSYGKNLKKITITSG--VTTLGDGAF---------YGMKAL 242 (379)
T ss_dssp TEEEETTSSEEEECCTTCCCSEEECC-TTCCE-E-CTTTTTTCSSCSEEECCTT--CCEECTTTT---------TTCSSC
T ss_pred ceecccccceeccccccccccccccc-cceeE-E-eecccccccccceeeeccc--eeEEccccc---------cCCccc
Confidence 00 000000111111110 00010 1 1124556677777777542 333333333 367889
Q ss_pred ceEeEecCCCCcccc--ccccCCCCceEeEccCccchhhhccCccCCCCcccCCCccccccceecccccccccccCCCCc
Q 007656 447 HCVRIEQCHKLKDVT--FLIFAPNLKSLDLSYCSSMEEVISVGKFAETPEMMGHISPFENLQSLHLSQLPALKSIYWKPL 524 (594)
Q Consensus 447 ~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~ 524 (594)
+.+.+.. .++.+. .+..+.+|+.+.+... ++.+.. ..+..+++|+.+.+.+. .++.|+....
T Consensus 243 ~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~-----------~aF~~c~~L~~i~l~~~-~i~~I~~~aF 306 (379)
T 4h09_A 243 DEIAIPK--NVTSIGSFLLQNCTALKTLNFYAK--VKTVPY-----------LLCSGCSNLTKVVMDNS-AIETLEPRVF 306 (379)
T ss_dssp CEEEECT--TCCEECTTTTTTCTTCCEEEECCC--CSEECT-----------TTTTTCTTCCEEEECCT-TCCEECTTTT
T ss_pred eEEEcCC--CccEeCccccceeehhcccccccc--ceeccc-----------ccccccccccccccccc-ccceehhhhh
Confidence 9998876 366665 4778889999988643 444432 25677889999998753 5777765543
Q ss_pred -cCCCccEEeecccCCCCCCCCCCcC--CcCcceEE
Q 007656 525 -PFTHLKEISVGYCRNLKKLPLDSNS--AKERKFVI 557 (594)
Q Consensus 525 -~l~~L~~L~i~~C~~L~~lp~~~~~--~~L~~l~I 557 (594)
.+++|+.+.+.. +++.++..... .+|+.+.|
T Consensus 307 ~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 307 MDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred cCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 467888887642 35555443322 44555544
No 164
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.78 E-value=1.1e-05 Score=87.22 Aligned_cols=58 Identities=22% Similarity=0.343 Sum_probs=49.3
Q ss_pred CceechhHHHHHHHHHHhc--CCceEEEEEecCCCchhHHHHHHHHhhccC-CCCC-ceEEEe
Q 007656 158 PTIVGLQSQLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKFLES-PTNF-DCVIWV 216 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~--~~~~~i~i~G~gG~gKttl~~~~~~~~~~~-~~~f-~~~~w~ 216 (594)
+.+|||+..++++.++|.. +..++++|+||||+||||+|..++++. .. ...| +.+.|+
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv 185 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWV 185 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEE
T ss_pred CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEE
Confidence 5689999999999999974 578999999999999999999998864 22 4567 478887
No 165
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.63 E-value=2.7e-05 Score=91.76 Aligned_cols=60 Identities=23% Similarity=0.341 Sum_probs=49.1
Q ss_pred CCceechhHHHHHHHHHHhc--CCceEEEEEecCCCchhHHHHHHHHhhccCCCCC-ceEEEe
Q 007656 157 EPTIVGLQSQLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNF-DCVIWV 216 (594)
Q Consensus 157 ~~~~vG~~~~~~~i~~~L~~--~~~~~i~i~G~gG~gKttl~~~~~~~~~~~~~~f-~~~~w~ 216 (594)
.+.+|||+.+++++.++|.. +..++|+|+||||+||||||+.+|++.......| +.+.|+
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v 185 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWV 185 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEE
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEE
Confidence 35689999999999999963 6899999999999999999999998752224444 566688
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.46 E-value=0.0034 Score=52.35 Aligned_cols=54 Identities=28% Similarity=0.434 Sum_probs=29.2
Q ss_pred EEEccCCccc--ccchhhhccCcCcEEecCCCCCCCCcchhhhcCCCCCcEEEecCCCC
Q 007656 275 LLDISYASIT--ELPEELKLLVNLKCLNLRWTDTLNKIPRQLISILSWLRVLRMLGTGW 331 (594)
Q Consensus 275 ~L~ls~~~l~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~L~~L~~L~l~~~~~ 331 (594)
.++.++++++ .+|..+. .+|++|+|++| .++.+|.++|..+++|+.|++.+|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence 4455555555 5553321 24566666666 55666655555566666666665543
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.01 E-value=0.0071 Score=50.36 Aligned_cols=52 Identities=21% Similarity=0.242 Sum_probs=38.0
Q ss_pred EEEccCCcCccc--ccCchHHhhhhcCcEEEccCCcccccch-hhhccCcCcEEecCCCC
Q 007656 249 VLKMSNCWNFTL--KLPLAMSELGSSLELLDISYASITELPE-ELKLLVNLKCLNLRWTD 305 (594)
Q Consensus 249 ~L~L~~~~~l~~--~lp~~i~~l~~~L~~L~ls~~~l~~lp~-~i~~L~~L~~L~L~~~~ 305 (594)
.++.+++ ++ + .+|.. +.++|++|+|++|.|+.||. .|..+++|++|+|.+|+
T Consensus 12 ~v~Cs~~-~L-~~~~vP~~---lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRR-GL-TWASLPTA---FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSS-CC-CTTTSCSC---CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCC-CC-ccccCCCC---CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5667777 77 6 67754 33378888888888888876 56778888888888874
No 168
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.88 E-value=0.0094 Score=53.05 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=41.4
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++|++..++.+.+++.......+-++|..|+|||++++.+....
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999988777778899999999999999998876
No 169
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.65 E-value=0.011 Score=58.50 Aligned_cols=44 Identities=23% Similarity=0.256 Sum_probs=39.5
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++||+.+.+.+.+++..+ +++.|+|..|+||||+++.+.+..
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS
T ss_pred HhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc
Confidence 56899999999999999765 789999999999999999988775
No 170
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.53 E-value=0.026 Score=50.43 Aligned_cols=119 Identities=14% Similarity=0.047 Sum_probs=57.7
Q ss_pred hcCCCcccEEEccCCcCcccc-----cCchHHhhhhcCcEEEccCCccc-----ccchhhhccCcCcEEecCCCCCCCCc
Q 007656 241 FQLMPSLKVLKMSNCWNFTLK-----LPLAMSELGSSLELLDISYASIT-----ELPEELKLLVNLKCLNLRWTDTLNKI 310 (594)
Q Consensus 241 ~~~l~~L~~L~L~~~~~l~~~-----lp~~i~~l~~~L~~L~ls~~~l~-----~lp~~i~~L~~L~~L~L~~~~~l~~l 310 (594)
+.+-+.|+.|+|+++..+ +. +-..+..-. .|+.|+|++|.|. .|-..+..-+.|++|+|++| .++.-
T Consensus 37 l~~n~~L~~L~L~~nn~i-gd~ga~~la~aL~~N~-~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~ 113 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRV-SKERIRSLIEAACNSK-HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPE 113 (197)
T ss_dssp HTTCSSCCEEECTTCCSS-CHHHHHHHHHHHTTCS-CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHH
T ss_pred HhcCCCccEEECCCCCCC-CHHHHHHHHHHHhhCC-CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHH
Confidence 344455666666553133 21 222333334 5666666666554 23334445566666666666 44421
Q ss_pred ch----hhhcCCCCCcEEEecCCCCCccccCCCCccccCC-cccchHHhcCCCCCcEEEEEEcchh
Q 007656 311 PR----QLISILSWLRVLRMLGTGWFNFLEAPEDSVLFGG-GEVLIQELLGLKYLEVLELTLGSYH 371 (594)
Q Consensus 311 p~----~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~L~~L~~L~l~~~~~~ 371 (594)
.. +.+..=+.|++|++++|.... ++.. ...+.+.+..-+.|..|+++.+...
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~---------ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSV---------LGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCC---------CCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcC---------cCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 11 112333457777776542200 0000 1124556666677777777766543
No 171
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.52 E-value=0.0092 Score=60.68 Aligned_cols=46 Identities=24% Similarity=0.190 Sum_probs=37.5
Q ss_pred CceechhHHHHHHHHHH-hc------CCceEEEE--EecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCL-VE------ESVGIIGL--YGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L-~~------~~~~~i~i--~G~gG~gKttl~~~~~~~~ 203 (594)
..++||+.+++.+.+++ .. .....+-| +|.+|+||||+++.+.+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 56899999999999998 42 23344545 9999999999999999876
No 172
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.49 E-value=0.014 Score=51.64 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=41.2
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|++..++.+.+.+.......+-++|..|+||||+++.+....
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999988766777899999999999999998877
No 173
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.06 E-value=0.018 Score=57.82 Aligned_cols=46 Identities=24% Similarity=0.396 Sum_probs=40.8
Q ss_pred CceechhHHHHHHHHHHhc----CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~----~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++||+..++.+.+++.. .....+.|+|..|+||||+++.+.+..
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999874 456788999999999999999999876
No 174
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.98 E-value=0.022 Score=56.42 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=38.0
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++||+.+++.+.+ +.. +++.|+|..|+||||+++.+.+..
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc
Confidence 568999999999999 765 699999999999999999998876
No 175
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.88 E-value=0.023 Score=51.83 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=40.7
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|++..++.+.+++.......+-++|..|+|||++++.+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999988766568899999999999999998875
No 176
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.51 E-value=0.034 Score=51.47 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=40.2
Q ss_pred CceechhHHHHHHHHHHhcCC-ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~-~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|++..++.+..++..+. ...+-|+|..|+||||+++.+.+..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999998764 3578899999999999999998877
No 177
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.18 E-value=0.046 Score=54.85 Aligned_cols=46 Identities=22% Similarity=0.079 Sum_probs=39.9
Q ss_pred CceechhHHHHHHHHHHhc----CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~----~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|++..++++..++.. +..+.+-|+|..|+||||+++.+.+..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999877754 456789999999999999999999876
No 178
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.14 E-value=0.038 Score=49.31 Aligned_cols=83 Identities=18% Similarity=0.124 Sum_probs=49.9
Q ss_pred cCcEEEccCC-ccc-----ccchhhhccCcCcEEecCCCCCCCCcch----hhhcCCCCCcEEEecCCCCCccccCCCCc
Q 007656 272 SLELLDISYA-SIT-----ELPEELKLLVNLKCLNLRWTDTLNKIPR----QLISILSWLRVLRMLGTGWFNFLEAPEDS 341 (594)
Q Consensus 272 ~L~~L~ls~~-~l~-----~lp~~i~~L~~L~~L~L~~~~~l~~lp~----~~~~~L~~L~~L~l~~~~~~~~~~~~~~~ 341 (594)
.|++|+|+++ .|. .+-..+..-..|+.|+|++| .+..--. +.+..-+.|++|+++.|.+....
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G------ 114 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPEL------ 114 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH------
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH------
Confidence 7888888875 654 23345666677888888888 4543221 11334467888888888775411
Q ss_pred cccCCcccchHHhcCCCCCcEEEEE
Q 007656 342 VLFGGGEVLIQELLGLKYLEVLELT 366 (594)
Q Consensus 342 ~~~~~~~~~~~~l~~L~~L~~L~l~ 366 (594)
.....+.+..-+.|+.|+++
T Consensus 115 -----a~ala~aL~~N~tL~~L~L~ 134 (197)
T 1pgv_A 115 -----LARLLRSTLVTQSIVEFKAD 134 (197)
T ss_dssp -----HHHHHHHTTTTCCCSEEECC
T ss_pred -----HHHHHHHHhhCCceeEEECC
Confidence 11234445555567777665
No 179
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.69 E-value=0.053 Score=52.80 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=41.2
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|++..++.+.+++..+....+-++|..|.||||+++.+.+..
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4579999999999999998876668899999999999999998876
No 180
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.64 E-value=0.08 Score=51.64 Aligned_cols=46 Identities=24% Similarity=0.295 Sum_probs=41.6
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|++..++.+..++..+....+-++|..|.||||+|+.+.+..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4589999999999999998877678999999999999999999876
No 181
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.51 E-value=0.047 Score=54.71 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=40.4
Q ss_pred CceechhHHHHHHHHHHhc----CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~----~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++|++..++.+..++.. .....+-|+|..|+||||+++.+.+..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999853 466788899999999999999999876
No 182
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.43 E-value=0.088 Score=52.80 Aligned_cols=46 Identities=24% Similarity=0.213 Sum_probs=39.9
Q ss_pred CceechhHHHHHHHHHHhc----CC--ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE----ES--VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~----~~--~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+.++|++..++.+..++.. .. .+.+.|+|..|+||||+++.+.+..
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999875 23 3388999999999999999999887
No 183
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=91.92 E-value=0.14 Score=48.89 Aligned_cols=46 Identities=30% Similarity=0.386 Sum_probs=38.7
Q ss_pred CceechhHHHHHHHHHHhc-------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~-------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++.+.+.+.. .....+-++|..|.|||++|+.+.+..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 5689999999999888743 345668899999999999999999876
No 184
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.78 E-value=0.12 Score=51.07 Aligned_cols=46 Identities=15% Similarity=0.302 Sum_probs=40.6
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++.+..++..+....+-++|..|.||||+++.+....
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999988866568899999999999999988875
No 185
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.24 E-value=0.2 Score=51.61 Aligned_cols=46 Identities=22% Similarity=0.366 Sum_probs=40.0
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++|++..++.+...+......-+=++|-.|+|||++|+.+...+
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999977655556699999999999999999887
No 186
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.59 E-value=0.26 Score=41.50 Aligned_cols=44 Identities=23% Similarity=0.331 Sum_probs=34.7
Q ss_pred ceechhHHHHHHHHHHhc---CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 159 TIVGLQSQLEQVWRCLVE---ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 159 ~~vG~~~~~~~i~~~L~~---~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++|....+.++.+.+.. .... |=|+|-.|.|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~-vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIA-VWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSC-EEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCC-EEEECCCCCCHHHHHHHHHHhC
Confidence 468999888888888753 3444 4599999999999999999876
No 187
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=90.52 E-value=0.15 Score=49.42 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=40.7
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|++..++.+.+++..+....+-++|..|.|||++++.+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 4579999999999999988776668899999999999999998876
No 188
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.12 E-value=0.29 Score=48.67 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=39.9
Q ss_pred CceechhHHHHHHHHHHhcCCc-eEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~-~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|++..++.+...+..+.. ..+-++|..|+||||+++.+....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999987654 456799999999999999998877
No 189
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.89 E-value=0.28 Score=51.26 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=39.9
Q ss_pred CceechhHHHHHHHHHHhc-----------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE-----------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~-----------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|++..++.+.+++.. ...+.+-++|..|+||||+|+.+.+..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999975 134688899999999999999999886
No 190
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=89.79 E-value=0.31 Score=46.91 Aligned_cols=46 Identities=26% Similarity=0.288 Sum_probs=38.1
Q ss_pred CceechhHHHHHHHHHHhc-------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~-------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++.+.+++.. ...+.+-++|..|.|||++|+.+.+..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 4589999888888887642 345678899999999999999999876
No 191
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.58 E-value=0.3 Score=47.94 Aligned_cols=46 Identities=20% Similarity=0.354 Sum_probs=40.3
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++.+..++..+++..+-++|..|.||||+++.+....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3468988889999999988877668999999999999999998886
No 192
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=89.53 E-value=0.36 Score=46.54 Aligned_cols=45 Identities=20% Similarity=0.343 Sum_probs=35.9
Q ss_pred ceechhHHHHHHHHHHh---------------cCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 159 TIVGLQSQLEQVWRCLV---------------EESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 159 ~~vG~~~~~~~i~~~L~---------------~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+++|.+..++.+.+.+. ......+-++|..|.|||++|+.+.+..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 47899888888877654 2344567899999999999999888876
No 193
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=89.44 E-value=0.5 Score=42.32 Aligned_cols=41 Identities=20% Similarity=0.473 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHhc---CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 163 LQSQLEQVWRCLVE---ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 163 ~~~~~~~i~~~L~~---~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
++..++.+.+.+.. ..-.+++|.|..|.||||+++.+....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44566777777764 356899999999999999999988765
No 194
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=89.42 E-value=0.4 Score=44.84 Aligned_cols=46 Identities=20% Similarity=0.195 Sum_probs=35.5
Q ss_pred CceechhHHHHHHHHHHh---c---------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLV---E---------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~---~---------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++.+.+.+. . .....+-++|..|.|||++|+.+.+..
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 568999888877766542 1 123456699999999999999999987
No 195
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=89.40 E-value=0.3 Score=49.90 Aligned_cols=46 Identities=28% Similarity=0.324 Sum_probs=40.8
Q ss_pred CceechhHHH---HHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQL---EQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~---~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..+ ..+...+..+.+..+-++|-.|.||||+|+.+.+..
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 4579998887 788888888888888899999999999999999987
No 196
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=89.39 E-value=0.46 Score=46.42 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=34.3
Q ss_pred echhHHHHHHHHHHh----cCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 161 VGLQSQLEQVWRCLV----EESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 161 vG~~~~~~~i~~~L~----~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
|+.+.-.+.+++.+. .+....|.++|+.|.||||+++.+....
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 556666777777764 4567789999999999999999888766
No 197
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.14 E-value=0.19 Score=49.73 Aligned_cols=46 Identities=15% Similarity=0.120 Sum_probs=39.4
Q ss_pred CceechhHHHHHHHHHH-hcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCL-VEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L-~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+...+.+.+++ ..+....+-++|..|.||||+++.+....
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999998888 66665558999999999999999998865
No 198
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=88.97 E-value=0.32 Score=47.25 Aligned_cols=46 Identities=26% Similarity=0.379 Sum_probs=38.4
Q ss_pred CceechhHHHHHHHHHHhc-----CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE-----ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~-----~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|++..+..+..++.. .....+-|+|..|.|||++|+.+.+..
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999998888888753 344567799999999999999999877
No 199
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=88.95 E-value=0.3 Score=47.26 Aligned_cols=45 Identities=4% Similarity=0.158 Sum_probs=39.5
Q ss_pred eechhHHHHHHHHHHhc----CCceEEEEEecCCCchhHHHHHHHHhhc
Q 007656 160 IVGLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 160 ~vG~~~~~~~i~~~L~~----~~~~~i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
+.||+.+++++...|.. +....+=|+|..|.|||++++.+.+...
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999887754 5777888999999999999999999883
No 200
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=88.85 E-value=0.41 Score=45.84 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=38.2
Q ss_pred CceechhHHHHHHHHHHhc------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++.+.+.+.. .....+-++|..|.||||+|+.+....
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 5689999999998888732 234677899999999999999999876
No 201
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=88.71 E-value=0.37 Score=42.19 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHhc---CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 163 LQSQLEQVWRCLVE---ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 163 ~~~~~~~i~~~L~~---~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
....++.+.+++.+ ..-..+.++|..|.||||+++.+.+..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34445555555544 234778999999999999999999877
No 202
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=88.71 E-value=0.37 Score=47.20 Aligned_cols=46 Identities=26% Similarity=0.321 Sum_probs=38.9
Q ss_pred CceechhHHHHHHHHHHhc-----CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE-----ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~-----~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|++..++.+..++.. .....+-|+|..|.|||++|+.+....
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4689999999999888864 345567899999999999999998876
No 203
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=88.27 E-value=0.43 Score=43.31 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=35.3
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..+-+.+...+.+.+.+......++.++|.+|+||||++..+....
T Consensus 9 ~~l~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 9 DLLAENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp --CHHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHhhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3344556667777777766788999999999999999998877765
No 204
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=87.82 E-value=0.46 Score=44.41 Aligned_cols=46 Identities=24% Similarity=0.238 Sum_probs=35.0
Q ss_pred CceechhHHHHHHHHHHh---c---------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLV---E---------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~---~---------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++++.+.+. . ....-+-++|..|.||||+|+.+.+..
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 568999888777665542 2 123457799999999999999999876
No 205
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=87.76 E-value=0.66 Score=42.21 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 165 SQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 165 ~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...+.+...+.......|.++|.+|+||||++..+....
T Consensus 24 ~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 24 RLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 344455555555678999999999999999998877765
No 206
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=87.74 E-value=0.5 Score=46.72 Aligned_cols=46 Identities=24% Similarity=0.219 Sum_probs=38.3
Q ss_pred CceechhHHHHHHHHHHhc------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++.+.+.+.. ...+.+-++|..|.|||++|+.+.+..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999998888742 345677899999999999999998876
No 207
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=87.42 E-value=0.66 Score=45.92 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=36.9
Q ss_pred CceechhHHHHH---HHHHHhcCCc--eEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQ---VWRCLVEESV--GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~---i~~~L~~~~~--~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++. +.+.+..... ..+=++|..|+|||++|+.+.+..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999988665 4555555544 478899999999999999999988
No 208
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=87.32 E-value=0.54 Score=51.77 Aligned_cols=46 Identities=22% Similarity=0.366 Sum_probs=40.3
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++|++..++.+...|......-+=++|-.|+|||++|+.+...+
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999977655556799999999999999998886
No 209
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=87.25 E-value=0.43 Score=53.38 Aligned_cols=46 Identities=22% Similarity=0.413 Sum_probs=40.4
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++|++..+..+++.+.......+-++|-.|+||||+++.+....
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999999999999987766667799999999999999998876
No 210
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=87.19 E-value=0.71 Score=42.29 Aligned_cols=45 Identities=16% Similarity=0.151 Sum_probs=34.0
Q ss_pred ceech---hHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 159 TIVGL---QSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 159 ~~vG~---~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+++|. +..++.+..+........+-|+|..|.||||+++.+....
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45552 3556666666665567788899999999999999998877
No 211
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=86.94 E-value=0.59 Score=44.92 Aligned_cols=46 Identities=24% Similarity=0.237 Sum_probs=37.7
Q ss_pred CceechhHHHHHHHHHHhc--------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE--------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~--------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++|.+..++.+...+.. .....+-++|-.|.|||++|+.+.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999998888754 223456699999999999999999887
No 212
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=86.61 E-value=0.7 Score=44.91 Aligned_cols=46 Identities=22% Similarity=0.310 Sum_probs=37.4
Q ss_pred CceechhHHHHHHHHHHhc------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++.+.+.+.. ...+.+-++|..|.|||++|+.+.+..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 5689999988888877631 133677899999999999999999876
No 213
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=86.54 E-value=0.44 Score=46.60 Aligned_cols=46 Identities=26% Similarity=0.332 Sum_probs=36.0
Q ss_pred CceechhHHHHHHHHHHhc-----CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE-----ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~-----~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++.+...+.. .....+.++|..|.||||+++.+.+..
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3467887777776666543 345778999999999999999999987
No 214
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=86.25 E-value=0.71 Score=50.86 Aligned_cols=46 Identities=24% Similarity=0.357 Sum_probs=40.5
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++|++..+..+++.|......-+-++|-.|+|||++++.+...+
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999987766667799999999999999998876
No 215
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=85.80 E-value=0.9 Score=40.48 Aligned_cols=39 Identities=33% Similarity=0.331 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcC----CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 165 SQLEQVWRCLVEE----SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 165 ~~~~~i~~~L~~~----~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++.+.+++... ....+-|+|..|.||||+|+.+++..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3445555666543 11678899999999999999999987
No 216
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=85.47 E-value=0.89 Score=40.85 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=30.0
Q ss_pred HHHHHHHHHhc--CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 166 QLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 166 ~~~~i~~~L~~--~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-.++|.+.+.. ..-.+++|.|..|.||||+++.+....
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44555566553 466899999999999999999988876
No 217
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=85.32 E-value=0.89 Score=42.96 Aligned_cols=46 Identities=24% Similarity=0.235 Sum_probs=34.4
Q ss_pred CceechhHHHHHHHHHHhc-------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~-------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++.|.+..++++.+.+.. .-.+-+.++|..|.||||+++.+....
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc
Confidence 5678999888888775421 112338999999999999999999876
No 218
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=85.31 E-value=0.86 Score=44.25 Aligned_cols=46 Identities=24% Similarity=0.361 Sum_probs=37.7
Q ss_pred CceechhHHHHHHHHHHhc------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++.+.+.+.. ...+.+=++|..|.|||++|+.+.+..
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 5689999999999888721 123567799999999999999999886
No 219
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=84.88 E-value=0.59 Score=40.34 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.8
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+|.|.|+.|.||||+++.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998876
No 220
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=84.84 E-value=0.53 Score=45.52 Aligned_cols=27 Identities=30% Similarity=0.717 Sum_probs=22.5
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 177 ~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
++.++|+|.|=||+||||.+-.+.-.+
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aL 72 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAF 72 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHH
Confidence 578999999999999999877666655
No 221
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=84.58 E-value=0.75 Score=44.27 Aligned_cols=46 Identities=24% Similarity=0.399 Sum_probs=38.3
Q ss_pred CceechhHHHHHHHHHHhcC---------CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEE---------SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~---------~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++|.+..++.+...+... ....+-++|-.|.||||+|+.+....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 45789998888888888653 24578999999999999999999987
No 222
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=84.44 E-value=0.53 Score=40.68 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=19.9
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+|.+.|+.|.||||+++.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 37899999999999999999 443
No 223
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=83.69 E-value=1 Score=43.71 Aligned_cols=46 Identities=17% Similarity=0.063 Sum_probs=38.9
Q ss_pred CceechhHHHHHHHHHHhcCCc-eEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~-~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++.+.+++..+.. .++=+.|..|.|||++++.+.+..
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 5689999999999999987755 455566779999999999998876
No 224
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=83.55 E-value=0.55 Score=39.35 Aligned_cols=45 Identities=13% Similarity=0.082 Sum_probs=32.6
Q ss_pred CceechhHHHHHHHHHHhc---CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE---ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~---~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-+++|.+..+.++.+.+.. .... +=|+|-.|.|||++|+.+.+..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~-vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSP-VFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSC-EEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCc-EEEECCCCccHHHHHHHHHHhC
Confidence 3578998888888887754 3334 5589999999999999887765
No 225
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=83.49 E-value=1.4 Score=42.05 Aligned_cols=27 Identities=26% Similarity=0.237 Sum_probs=23.8
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 177 ~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
....+|+|.|..|.||||+++.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999887766
No 226
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=83.28 E-value=1.2 Score=42.93 Aligned_cols=45 Identities=11% Similarity=0.234 Sum_probs=36.1
Q ss_pred CceechhHHHHHHHHHHhc---CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE---ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~---~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++|....+.++.+.+.. .... +=|+|-.|.|||++|+.+.+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~-vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDAT-VLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSC-EEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCc-EEEECCCCchHHHHHHHHHHhC
Confidence 4578999888888888755 3444 4489999999999999999976
No 227
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=83.25 E-value=0.7 Score=40.74 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHHh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
-.++++.|..|.||||+++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 357999999999999999998664
No 228
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=83.19 E-value=0.53 Score=44.28 Aligned_cols=46 Identities=22% Similarity=0.173 Sum_probs=35.1
Q ss_pred CceechhHHHHHHHHHHhc------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++.+.+.+.. ....-+-++|..|.|||++|+.+.+..
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 5689998887777776541 112335689999999999999999987
No 229
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=83.04 E-value=0.75 Score=41.01 Aligned_cols=26 Identities=38% Similarity=0.353 Sum_probs=23.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
....|.|.|+.|.||||+++.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998876
No 230
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=82.91 E-value=1.1 Score=44.31 Aligned_cols=46 Identities=24% Similarity=0.361 Sum_probs=37.1
Q ss_pred CceechhHHHHHHHHHHhc------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++.+.+.+.. ...+.+-++|..|.|||++|+.+.+..
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 4689999999998887731 123456789999999999999999987
No 231
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=82.87 E-value=1.2 Score=44.64 Aligned_cols=46 Identities=20% Similarity=0.227 Sum_probs=37.9
Q ss_pred CceechhHHHHHHHHHHhc------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++.+.+++.. .....+-++|-.|.|||++|+.+.+..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999888732 234567799999999999999998875
No 232
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=82.28 E-value=1.8 Score=40.70 Aligned_cols=46 Identities=20% Similarity=0.149 Sum_probs=34.7
Q ss_pred CceechhHHHHHHHH-------HHh---cCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWR-------CLV---EESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~-------~L~---~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++|....+++++. .+. ......+=++|..|.|||++|+.+.+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 346777776666665 333 3456778899999999999999999876
No 233
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=82.27 E-value=1.1 Score=41.94 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=32.9
Q ss_pred CceechhHHHHHHHHHHhc--CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~--~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++|.+..+..+.+.+.. ..-.-+=|+|-.|.|||++|+.+.+..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 4578998888888776643 222345589999999999999999876
No 234
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=82.18 E-value=0.95 Score=42.12 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.4
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 177 ~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
....+|+|.|..|.||||+++.+....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999988865
No 235
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=82.02 E-value=0.83 Score=39.98 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.4
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|+|..|.||||+++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999988765
No 236
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=81.89 E-value=1.4 Score=45.05 Aligned_cols=46 Identities=22% Similarity=0.310 Sum_probs=37.9
Q ss_pred CceechhHHHHHHHHHHhc------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++.+.+.+.. ...+.+-++|..|.|||++|+.+.+..
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999988887731 234677899999999999999999876
No 237
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=81.81 E-value=0.88 Score=39.54 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.6
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+|-+.|+.|.||||+++.+....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468899999999999999998876
No 238
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=81.78 E-value=1.1 Score=37.81 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=29.7
Q ss_pred ceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 159 TIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 159 ~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++|.+.. .+..|..-.-..+.++|..|.||||+++.+.+..
T Consensus 19 f~~g~n~~---~~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 19 FLGTENAE---LVYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSCCTHH---HHHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred cCcCccHH---HHHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34454433 3334433245678899999999999999999987
No 239
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=81.48 E-value=1.5 Score=40.62 Aligned_cols=46 Identities=22% Similarity=0.238 Sum_probs=32.8
Q ss_pred CceechhHHHHHHHHHHh---c---------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLV---E---------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~---~---------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..+.++.+... . .-.+-+.++|..|.||||+++.+....
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 457888766665554432 1 011238899999999999999999876
No 240
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=81.38 E-value=0.79 Score=39.63 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.6
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+|.|.|..|.||||+++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 241
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=81.01 E-value=1.1 Score=39.28 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.8
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..|.|.|+.|.||||+++.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999998877
No 242
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=80.52 E-value=1.1 Score=39.93 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=21.3
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.|.|.|+.|.||||+++.+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58899999999999999998877
No 243
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=80.37 E-value=1.4 Score=39.21 Aligned_cols=30 Identities=30% Similarity=0.519 Sum_probs=25.5
Q ss_pred HhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 174 LVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 174 L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+....-.+|.|.|..|.||||+++.+....
T Consensus 20 ~~~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 20 LLDQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp HHTSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344566899999999999999999988876
No 244
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=80.34 E-value=1.1 Score=38.55 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=22.5
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...+|.|.|+.|.||||+++.+....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998876
No 245
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=80.34 E-value=1.2 Score=38.53 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=22.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-.++.+.|..|.||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 3679999999999999999987765
No 246
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=80.33 E-value=1.2 Score=38.58 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.5
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+.+++|.|..|.||||++..+...+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 46789999999999999998888776
No 247
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=79.99 E-value=0.88 Score=40.61 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..+|.|.|..|.||||+++.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999988876
No 248
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=79.99 E-value=1.1 Score=39.88 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.2
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 177 ~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..-.+++|.|..|.||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 355789999999999999999998765
No 249
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=79.99 E-value=1.8 Score=40.78 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=33.4
Q ss_pred CceechhHHHHHHHHHHhc------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++++.+.... .-.+-+.|+|..|.||||+++.+....
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 4678988776666554321 011238899999999999999999876
No 250
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=79.93 E-value=1.1 Score=39.10 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...|.+.|+.|.||||+++.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999998876
No 251
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=79.86 E-value=1.2 Score=39.19 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.2
Q ss_pred eEEEEEecCCCchhHHHHHHHHh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
.++++.|..|.||||+++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999998753
No 252
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=79.85 E-value=1.2 Score=38.91 Aligned_cols=23 Identities=43% Similarity=0.580 Sum_probs=21.1
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++|.|..|.||||+++.+....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998876
No 253
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=79.74 E-value=1.4 Score=42.86 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=37.2
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++|.+..++.+...+..+. -+-++|-.|.|||++|+.+.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHh
Confidence 567999999988888887653 45689999999999999998876
No 254
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=79.47 E-value=1.1 Score=39.83 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.4
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.|..|.||||+++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 479999999999999999988764
No 255
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=79.46 E-value=1.2 Score=39.76 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.1
Q ss_pred eEEEEEecCCCchhHHHHHHHH
Q 007656 180 GIIGLYGMGGVGKTTLLTHINN 201 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~ 201 (594)
.+|+|.|..|.||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999877
No 256
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=79.43 E-value=1.3 Score=38.50 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=20.0
Q ss_pred eEEEEEecCCCchhHHHHHHHH
Q 007656 180 GIIGLYGMGGVGKTTLLTHINN 201 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~ 201 (594)
.+|.+.|..|.||||+++.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4788999999999999999877
No 257
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=79.35 E-value=1.3 Score=39.79 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=23.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.-.+++|.|..|.||||+++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999988865
No 258
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=79.22 E-value=1.2 Score=39.02 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.7
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..|.|.|+.|.||||+++.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998876
No 259
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=78.88 E-value=1.4 Score=38.53 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=23.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.-.+|.+.|+.|.||||+++.+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44678999999999999999998876
No 260
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.72 E-value=2 Score=43.26 Aligned_cols=46 Identities=26% Similarity=0.367 Sum_probs=38.1
Q ss_pred CceechhHHHHHHHHHHhc-------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~-------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++.|.+..+++|.+.+.- ...+-+=++|..|.|||++|+.+.+..
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999888877632 245667899999999999999999987
No 261
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=78.57 E-value=1.1 Score=39.06 Aligned_cols=25 Identities=44% Similarity=0.430 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...|.+.|+.|.||||+++.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999988776
No 262
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=78.39 E-value=2.7 Score=41.31 Aligned_cols=38 Identities=26% Similarity=0.442 Sum_probs=29.3
Q ss_pred HHHHHHHHHh--cCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 166 QLEQVWRCLV--EESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 166 ~~~~i~~~L~--~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
....+.+.+. .....+|+|.|.+|+||||++..+....
T Consensus 64 ~~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 64 QAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445555554 3578899999999999999998877665
No 263
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=78.28 E-value=1.1 Score=39.49 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.3
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+++++.|..|.||||+++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999988765
No 264
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=78.28 E-value=1.3 Score=39.55 Aligned_cols=24 Identities=38% Similarity=0.360 Sum_probs=21.4
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.|..|.||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 579999999999999999987765
No 265
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=78.10 E-value=1.6 Score=38.38 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-.+|.+.|+.|.||||+++.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578899999999999999988776
No 266
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=78.08 E-value=1.7 Score=38.61 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=22.5
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHh
Q 007656 177 ESVGIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 177 ~~~~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
....+|+|.|..|.||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35678999999999999999988764
No 267
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=77.83 E-value=1.4 Score=39.95 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.7
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+|+|.|..|.||||+++.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999988765
No 268
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.79 E-value=2.7 Score=42.39 Aligned_cols=46 Identities=26% Similarity=0.339 Sum_probs=37.9
Q ss_pred CceechhHHHHHHHHHHhc-------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~-------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++.|.+..+++|.+.+.- ...+-+=++|..|.|||++|+.+.+..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 5578999888888777632 245778899999999999999999987
No 269
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=77.63 E-value=1.4 Score=39.45 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=22.1
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...+|+|.|..|.||||+++.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999887653
No 270
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=77.42 E-value=6 Score=28.70 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007656 70 VQVWVSRVDAFKTGADE 86 (594)
Q Consensus 70 v~~Wl~~~~~~~y~aed 86 (594)
....++++.++.|..||
T Consensus 53 ~~~l~~~I~~ILYat~~ 69 (75)
T 3mtu_A 53 NDPVLQRIVDILYATDE 69 (75)
T ss_dssp TCHHHHHHHHHHHCBTT
T ss_pred hHHHHHHHHHHHhccCc
Confidence 34677888888887663
No 271
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=77.33 E-value=1.2 Score=39.87 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-.+|.+.|+.|.||||+++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4578899999999999999988765
No 272
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=77.28 E-value=1.5 Score=40.44 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=23.1
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...+++|.|..|.||||+++.+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998776
No 273
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=76.84 E-value=2.8 Score=42.83 Aligned_cols=46 Identities=24% Similarity=0.258 Sum_probs=35.7
Q ss_pred CceechhHHHHHHHHH---HhcCC--ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRC---LVEES--VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~---L~~~~--~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++.+..+ +..+. .+.+=++|..|.|||++|+.+.+..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 5689999887755444 44442 2467799999999999999999987
No 274
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=76.61 E-value=1.3 Score=39.54 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.2
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+.++|+|..|.||||+++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999987765
No 275
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=76.50 E-value=2.6 Score=41.79 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=35.8
Q ss_pred CceechhHHHHHHHHHHhc------------------------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE------------------------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~------------------------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++|.+..++.+...+.. ..-..+-++|..|.|||++|+.+.+..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4578998888888777621 023456799999999999999999876
No 276
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=76.49 E-value=1.8 Score=38.42 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=23.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...+|.+.|+.|.||||+++.+....
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999988765
No 277
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.45 E-value=2.4 Score=42.75 Aligned_cols=46 Identities=26% Similarity=0.329 Sum_probs=37.8
Q ss_pred CceechhHHHHHHHHHHhc-------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~-------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++.|.+..++++.+.+.. ...+-+=++|..|.|||.+|+.+.+..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 5578999998888876522 245677899999999999999999987
No 278
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=76.40 E-value=1.5 Score=39.11 Aligned_cols=22 Identities=41% Similarity=0.527 Sum_probs=19.8
Q ss_pred eEEEEEecCCCchhHHHHHHHH
Q 007656 180 GIIGLYGMGGVGKTTLLTHINN 201 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~ 201 (594)
.+|+|.|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 279
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=76.37 E-value=1.6 Score=42.03 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=23.8
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 177 ~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..-.+++|.|..|.||||+++.+..-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 345789999999999999999988876
No 280
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=76.26 E-value=1.2 Score=40.06 Aligned_cols=23 Identities=35% Similarity=0.746 Sum_probs=21.1
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+|.|.|..|.||||+++.+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999988876
No 281
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=76.24 E-value=1.9 Score=36.83 Aligned_cols=27 Identities=33% Similarity=0.315 Sum_probs=23.5
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 177 ~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..=.++++.|..|.||||+++.+..-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345689999999999999999988876
No 282
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=76.20 E-value=1.5 Score=42.00 Aligned_cols=29 Identities=28% Similarity=0.618 Sum_probs=23.0
Q ss_pred hcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 175 VEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 175 ~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.....++|+++|-||+||||++..+...+
T Consensus 37 ~~~~~~vI~v~~KGGvGKTT~a~nLA~~L 65 (307)
T 3end_A 37 KITGAKVFAVYGKGGIGKSTTSSNLSAAF 65 (307)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCceEEEEECCCCccHHHHHHHHHHHH
Confidence 33478899999999999999988777766
No 283
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=76.14 E-value=1.6 Score=39.04 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|+|..|.||||+++.+..-.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4579999999999999999988765
No 284
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=75.99 E-value=1.9 Score=37.87 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.5
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+|.+.|..|.||||+++.+....
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999988766
No 285
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=75.99 E-value=1.8 Score=38.15 Aligned_cols=25 Identities=36% Similarity=0.406 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..+|.+.|+.|.||||+++.+....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 286
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=75.88 E-value=1.5 Score=37.97 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=18.9
Q ss_pred ceEEEEEecCCCchhHHHHHHH
Q 007656 179 VGIIGLYGMGGVGKTTLLTHIN 200 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~ 200 (594)
-.+++++|..|.||||+++..+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3578999999999999999743
No 287
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=75.87 E-value=1.9 Score=37.57 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.3
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..|.+.|+.|.||||+++.+....
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999988765
No 288
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=75.75 E-value=1.8 Score=37.96 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=21.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHHh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
-..|.+.|+.|.||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999998887
No 289
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=75.71 E-value=2.6 Score=43.39 Aligned_cols=46 Identities=30% Similarity=0.323 Sum_probs=37.6
Q ss_pred CceechhHHHHHHHHHHhc-------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~-------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++++.+.+.. ....-+=|+|-.|.|||++|+.+.+..
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4589999999998887742 334567799999999999999998876
No 290
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=75.69 E-value=1.9 Score=38.48 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=22.1
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..|.|.|+.|.||||+++.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 578999999999999999998877
No 291
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=75.62 E-value=2.6 Score=41.55 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=36.5
Q ss_pred ceechhHHHHHHHHHHhc-------------C--CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 159 TIVGLQSQLEQVWRCLVE-------------E--SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 159 ~~vG~~~~~~~i~~~L~~-------------~--~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++|.+..++.+...+.. . ....+-++|..|.|||++|+.+....
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999988888731 1 33567789999999999999999887
No 292
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=75.60 E-value=1.9 Score=36.93 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=21.0
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.|.|.|+.|.||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 293
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=75.58 E-value=1.8 Score=37.95 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.9
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+|.+.|..|.||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998865
No 294
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=75.50 E-value=1.7 Score=39.00 Aligned_cols=26 Identities=31% Similarity=0.254 Sum_probs=22.5
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.-.+++|.|..|.||||+++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34579999999999999999988765
No 295
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=75.47 E-value=1.9 Score=38.13 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..+|.+.|..|.||||+++.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998876
No 296
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=75.47 E-value=1.9 Score=37.43 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+.++.|.|..|.||||++..+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999998888765
No 297
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=75.42 E-value=2.1 Score=37.52 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.3
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..+|.+.|..|.||||+++.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999988876
No 298
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=75.35 E-value=2 Score=37.97 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=23.6
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 177 ~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..-.+|+|.|+-|.||||+++.+....
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 356899999999999999999988764
No 299
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=75.32 E-value=1.7 Score=42.53 Aligned_cols=46 Identities=22% Similarity=0.351 Sum_probs=33.8
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..+..+..........-+=++|-.|.|||++|+.+.+..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 4578988766655444433333347789999999999999999876
No 300
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=74.94 E-value=1.9 Score=40.09 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=22.8
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.-.+|+|.|..|.||||+++.+...+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999998765
No 301
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=74.78 E-value=3.5 Score=39.76 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=23.2
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...+++|.|..|.||||+++.+..-.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56699999999999999999987766
No 302
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.71 E-value=3.2 Score=42.03 Aligned_cols=46 Identities=26% Similarity=0.337 Sum_probs=37.7
Q ss_pred CceechhHHHHHHHHHHhc-------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~-------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++.|.+..+++|.+.+.- ...+-|=++|..|.|||++|+.+.+..
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 4578999988888776521 256777799999999999999999987
No 303
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=74.66 E-value=2.1 Score=39.84 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.7
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++.|.|..|.||||+|+.+....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478899999999999999998876
No 304
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=74.56 E-value=1.9 Score=37.27 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=21.1
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.|.|.|+.|.||||+++.+....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998876
No 305
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=74.41 E-value=1.6 Score=37.47 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=21.5
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..|.|.|+.|.||||+++.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999998876
No 306
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=74.36 E-value=1.5 Score=38.22 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=21.0
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+|.|.|+.|.||||+++.+....
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998876
No 307
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=74.32 E-value=1.3 Score=38.38 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=21.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..+++|+|..|.||||+++.+..-.
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3679999999999999999887765
No 308
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=74.23 E-value=3.1 Score=42.64 Aligned_cols=46 Identities=22% Similarity=0.241 Sum_probs=35.1
Q ss_pred CceechhHHHHHHHHHHh---cC---------CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLV---EE---------SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~---~~---------~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.++.++++.+.+. .. -.+-+-++|..|.||||+|+.+.+..
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 568999887777766542 21 12347799999999999999999987
No 309
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=74.16 E-value=2.4 Score=42.83 Aligned_cols=46 Identities=24% Similarity=0.237 Sum_probs=37.1
Q ss_pred CceechhHHHHHHHHHHhc--------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE--------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~--------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++|.+..++.+...+.. -..+-+-++|..|.||||+|+.+....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999888888777633 134567799999999999999998877
No 310
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=74.04 E-value=1.8 Score=47.85 Aligned_cols=46 Identities=28% Similarity=0.317 Sum_probs=37.6
Q ss_pred CceechhHHHHHHHHHHhc-------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~-------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++++.+++.. ..-..+.++|-.|.||||+|+.+.+..
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4589999888888888743 234568899999999999999998865
No 311
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=74.03 E-value=1.8 Score=38.25 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.8
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+++|+|..|.||||+++.+....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58899999999999999988876
No 312
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=73.86 E-value=1.6 Score=39.52 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=21.3
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|+|..|.||||+++.+....
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 568999999999999999988754
No 313
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=73.84 E-value=3.6 Score=38.15 Aligned_cols=40 Identities=30% Similarity=0.338 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHhc-----CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 164 QSQLEQVWRCLVE-----ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 164 ~~~~~~i~~~L~~-----~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+...+.++..+.. ....+|.+.|..|.||||+++.+....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3344445444433 245789999999999999999998876
No 314
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=73.79 E-value=2 Score=39.70 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=22.9
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.-.+++|.|..|.||||+++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999987765
No 315
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=73.50 E-value=4.3 Score=38.46 Aligned_cols=26 Identities=35% Similarity=0.281 Sum_probs=22.7
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...+|-+.|..|.||||+++.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45788899999999999999988765
No 316
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=73.48 E-value=2.4 Score=36.72 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.4
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+|.+.|+.|.||||+++.+....
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999988765
No 317
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.46 E-value=3.2 Score=41.29 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=37.3
Q ss_pred CceechhHHHHHHHHHHhc-------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~-------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++.|.+..++++.+.+.- ...+-+=++|..|.|||.+|+.+.+..
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 5578999888888776632 234667799999999999999999987
No 318
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=73.40 E-value=3.3 Score=40.01 Aligned_cols=37 Identities=35% Similarity=0.336 Sum_probs=27.7
Q ss_pred HHHHHHHHhcC--CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 167 LEQVWRCLVEE--SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 167 ~~~i~~~L~~~--~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...+....... ....+-|+|..|.||||+++.+.+..
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 34444444443 34667899999999999999999977
No 319
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=73.39 E-value=2.2 Score=38.08 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-.+|.+.|..|.||||+++.+....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998875
No 320
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=73.23 E-value=1.7 Score=37.81 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=17.6
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+|.+.|+.|.||||+++.+....
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999988775
No 321
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=73.20 E-value=2.5 Score=39.49 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...|-+.|+.|.||||+++.+...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999988874
No 322
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=73.04 E-value=2.3 Score=37.41 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=21.0
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.|.+.|..|.||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999988876
No 323
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=73.00 E-value=2.3 Score=37.71 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-..|.+.|+.|.||||+++.+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999999999998876
No 324
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=72.91 E-value=2.3 Score=37.73 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=22.4
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.-+++.|+|..|.|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 44678999999999999999988765
No 325
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=72.78 E-value=2.1 Score=41.01 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=22.9
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.-.+++|+|.+|.||||++..+....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35689999999999999999988776
No 326
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=72.74 E-value=2.2 Score=39.69 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=22.5
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...++.+.|.||+||||++..+....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 46788899999999999998887766
No 327
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=72.73 E-value=2.2 Score=38.69 Aligned_cols=25 Identities=16% Similarity=0.204 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|+|..|.|||||++.+....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3578999999999999999988865
No 328
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=72.72 E-value=2.2 Score=40.75 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=22.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.-.+++++|.+|.||||++..+....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999998887765
No 329
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=72.71 E-value=2.5 Score=37.86 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.2
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 177 ~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..-.+|.+.|+.|.||||+++.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999988766
No 330
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=72.56 E-value=2.5 Score=37.87 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.3
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-..|.|.|..|.||||+++.+....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998876
No 331
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=72.49 E-value=2.9 Score=43.09 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=36.9
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++|.+..++.+...+..+. -+=++|..|.|||++|+.+....
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHH
Confidence 457999999888888877654 45689999999999999999876
No 332
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=72.44 E-value=2.1 Score=38.95 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=20.9
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.|..|.|||||++.+..-.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999887654
No 333
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=72.15 E-value=2.4 Score=40.60 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=22.3
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-.+++++|..|.||||+++.+....
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999888776
No 334
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=72.04 E-value=2.2 Score=39.27 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=22.9
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 177 ~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.. .+++|.|..|.|||||++.+..-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 46 789999999999999999987755
No 335
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=72.04 E-value=2.1 Score=38.48 Aligned_cols=32 Identities=22% Similarity=0.173 Sum_probs=23.9
Q ss_pred HHHHHHhcCCceEEEEEecCCCchhHHHHHHHHh
Q 007656 169 QVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 169 ~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
.+++-+..++ +++|.|..|.|||||++.+..-
T Consensus 14 ~~l~~i~~Ge--~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 14 HYVDAIDTNT--IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHHHHHHCS--EEEEECCTTSSTTHHHHHHHHH
T ss_pred HHHHhccCCC--EEEEECCCCCCHHHHHHHHhcC
Confidence 3444444443 5888999999999999988765
No 336
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=71.94 E-value=4.1 Score=39.47 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=23.6
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 177 ~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..-.+++++|..|.||||+++.+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999888765
No 337
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=71.72 E-value=2.5 Score=37.07 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=22.1
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..-.++++|..|+|||||++.+....
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 35678999999999999999887754
No 338
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=71.72 E-value=2.3 Score=39.73 Aligned_cols=24 Identities=29% Similarity=0.699 Sum_probs=20.9
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
++|+|.|-||+||||++..+...+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~l 25 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGL 25 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHHHH
Confidence 578888999999999998877776
No 339
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=71.63 E-value=2.2 Score=39.20 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=21.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+..-.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3579999999999999999877654
No 340
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=71.53 E-value=2.5 Score=40.02 Aligned_cols=23 Identities=26% Similarity=0.660 Sum_probs=20.9
Q ss_pred CceEEEEEecCCCchhHHHHHHH
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHIN 200 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~ 200 (594)
...+|+|.|+.|.||||+++.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999987
No 341
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=71.18 E-value=5.2 Score=40.96 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=22.8
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.-.+++|+|..|.||||+++.+....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 35699999999999999999988765
No 342
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=71.12 E-value=2.7 Score=40.43 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=23.2
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.-.+++|.|..|.||||+++.+....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999988866
No 343
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=71.09 E-value=2.2 Score=39.63 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-..|.|.|+.|.||||+++.+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3478999999999999999998876
No 344
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=71.01 E-value=2.4 Score=37.54 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.3
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..|.+.|+.|.||||+++.+....
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 478999999999999999988765
No 345
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=70.98 E-value=2.7 Score=38.17 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.6
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..|.+.|+.|.||||+++.+....
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 578999999999999999988765
No 346
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=70.93 E-value=4.5 Score=41.67 Aligned_cols=46 Identities=22% Similarity=0.232 Sum_probs=34.7
Q ss_pred CceechhHHHHHHHHHHh---cC---------CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLV---EE---------SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~---~~---------~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..+.++.+... +. -.+-+.++|-.|.||||+++.+....
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 568999877776665542 21 12348899999999999999999876
No 347
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=70.93 E-value=2.6 Score=39.98 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=21.3
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++|+|.|-||+||||++..+...+
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~L 26 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAAL 26 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHH
Confidence 4688889999999999988777766
No 348
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.79 E-value=4.1 Score=40.81 Aligned_cols=46 Identities=30% Similarity=0.408 Sum_probs=37.4
Q ss_pred CceechhHHHHHHHHHHhc-------------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~-------------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++.|.++.+++|.+.+.- ...+-|=++|..|.|||.+|+.+.+..
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh
Confidence 4567899888888776632 245778899999999999999999987
No 349
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=70.73 E-value=2.8 Score=37.73 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=20.0
Q ss_pred eEEEEEecCCCchhHHHHHHHH
Q 007656 180 GIIGLYGMGGVGKTTLLTHINN 201 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~ 201 (594)
.+|+|.|+.|.||||+++.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999865
No 350
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=70.59 E-value=2.4 Score=39.01 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=21.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|+|..|.|||||++.+..-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999887654
No 351
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=70.21 E-value=2.4 Score=39.65 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=21.8
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.=.+++|.|..|.|||||++.+..-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999877654
No 352
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=70.20 E-value=2.6 Score=39.13 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.8
Q ss_pred eEEEEEecCCCchhHHHHHHHHh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
.+++|.|..|.|||||++.+..-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999998874
No 353
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=70.04 E-value=2.6 Score=40.76 Aligned_cols=25 Identities=48% Similarity=0.658 Sum_probs=22.2
Q ss_pred CceEEEEEecCCCchhHHHHHHHHh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
.+.++.|.|+.|.||||+++.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999988764
No 354
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=70.01 E-value=3 Score=35.03 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=20.2
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..|.++|..|+||||++..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999998877653
No 355
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=69.79 E-value=3 Score=37.03 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=21.4
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+|+|.|..|.||||+++.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998876
No 356
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=69.69 E-value=2.5 Score=38.88 Aligned_cols=24 Identities=42% Similarity=0.578 Sum_probs=21.0
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.|..|.|||||++.+..-.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999987654
No 357
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=69.59 E-value=5.3 Score=40.50 Aligned_cols=36 Identities=28% Similarity=0.339 Sum_probs=27.1
Q ss_pred HHHHHHHhcCC-ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 168 EQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 168 ~~i~~~L~~~~-~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..+........ ...+-|+|..|+||||+|+.+.+..
T Consensus 118 ~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 118 HAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp HHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 33444443333 6678899999999999999999876
No 358
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=69.49 E-value=3 Score=39.21 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=21.1
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++++|-.|.||||+++.+....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999876
No 359
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=69.22 E-value=2.7 Score=39.38 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.6
Q ss_pred CceEEEEEecCCCchhHHHHHHHHh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
.=.+++|.|..|.|||||++.+..-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999998774
No 360
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=69.18 E-value=2.6 Score=39.27 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.1
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.|..|.|||||++.+..-.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999987654
No 361
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=69.06 E-value=3.2 Score=37.26 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=20.4
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.|.|.|..|.||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999987776
No 362
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=69.06 E-value=3.1 Score=37.46 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.6
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..|.+.|+.|.||||+++.+....
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468899999999999999998876
No 363
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=68.99 E-value=2.6 Score=39.36 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=22.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.=.+++|.|..|.|||||++.+..-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34689999999999999999877654
No 364
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=68.97 E-value=3.6 Score=43.78 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=37.5
Q ss_pred CceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++.+...+..+ ..+.++|-.|.||||+|+.+....
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 34789988888888877776 478899999999999999999876
No 365
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=68.94 E-value=5.8 Score=40.05 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=28.2
Q ss_pred HHHHHHHHHhc---------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 166 QLEQVWRCLVE---------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 166 ~~~~i~~~L~~---------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-.+++.+.+.. ...++|.++|.+|+||||++..+....
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34556666532 246899999999999999987777665
No 366
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=68.87 E-value=2.7 Score=38.35 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=21.2
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.|..|.|||||++.+..-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999987654
No 367
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=68.74 E-value=2.9 Score=38.55 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=22.1
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.=.+++|+|..|.|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999987654
No 368
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=68.73 E-value=2.7 Score=39.61 Aligned_cols=24 Identities=33% Similarity=0.620 Sum_probs=21.0
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.|..|.|||||++.+..-.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 578999999999999999887654
No 369
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=68.64 E-value=3.2 Score=37.53 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.4
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.=.+++|.|-.|.||||+++.+....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999988754
No 370
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=68.56 E-value=3.1 Score=35.36 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=19.6
Q ss_pred eEEEEEecCCCchhHHHHHHHHh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
..++++|..|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999887653
No 371
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=68.48 E-value=3.3 Score=40.61 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-.+++++|..|.||||++..+....
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4689999999999999999888776
No 372
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=68.42 E-value=3.1 Score=36.69 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.-.++++|..|+|||||++.+....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568899999999999999887753
No 373
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=68.29 E-value=3 Score=35.07 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=19.4
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.|.++|.+|+||||++..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999998877653
No 374
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=68.21 E-value=2.8 Score=39.27 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=21.6
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|-.|.|||||++.+..-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3578999999999999999887654
No 375
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=68.20 E-value=2.8 Score=38.75 Aligned_cols=24 Identities=38% Similarity=0.653 Sum_probs=21.0
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.|..|.|||||++.+..-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999976654
No 376
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=68.18 E-value=2.8 Score=38.99 Aligned_cols=25 Identities=44% Similarity=0.554 Sum_probs=21.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+..-.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999987654
No 377
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=67.93 E-value=5.8 Score=34.35 Aligned_cols=34 Identities=26% Similarity=0.543 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHh
Q 007656 168 EQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 168 ~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
..+.+ +.......|.++|..|+||||+...+.+.
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34555 44455667889999999999999887643
No 378
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=67.83 E-value=2.4 Score=38.19 Aligned_cols=24 Identities=38% Similarity=0.681 Sum_probs=20.8
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.|..|.|||||++.+..-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999987654
No 379
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=67.76 E-value=2.9 Score=38.70 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.1
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.|..|.|||||++.+..-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 478999999999999999987655
No 380
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=67.75 E-value=3 Score=38.34 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHH
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINN 201 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~ 201 (594)
=.+++|.|..|.||||+++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 46789999999999999998773
No 381
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=67.65 E-value=3.4 Score=37.06 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.3
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.|.|.|..|.||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999987765
No 382
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=67.38 E-value=3.6 Score=36.48 Aligned_cols=32 Identities=25% Similarity=0.228 Sum_probs=20.4
Q ss_pred HHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 172 RCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 172 ~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+.......-.|.++|..|+||||++..+.+..
T Consensus 23 ~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 23 NLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred hHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 33444455567899999999999997776543
No 383
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=67.37 E-value=2.1 Score=39.05 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=15.6
Q ss_pred eEEEEEecCCCchhHHHHHHH-Hhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHIN-NKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~-~~~ 203 (594)
.+++|.|..|.||||+++.+. ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 579999999999999999987 554
No 384
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=67.31 E-value=3 Score=39.21 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=22.1
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.=.+++|.|-.|.|||||++.+..-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999987754
No 385
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=67.26 E-value=3 Score=38.90 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=21.6
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|+|..|.|||||++.+..-.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3579999999999999999987654
No 386
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=67.19 E-value=3 Score=39.06 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=21.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+..-.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3579999999999999999987654
No 387
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=67.05 E-value=3.8 Score=39.76 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=22.0
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+|.|.|..|.||||++..+....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 489999999999999999998876
No 388
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=66.82 E-value=7.6 Score=35.64 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=23.6
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 177 ~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.....|.|.|..|.||||+++.+....
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999988766
No 389
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=66.64 E-value=3.2 Score=43.47 Aligned_cols=46 Identities=30% Similarity=0.351 Sum_probs=36.0
Q ss_pred CceechhHHHHHHHHHHhc------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLVE------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.+..++.+.+.+.- ..-..+.++|..|.||||+|+.+....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578988877777655432 245689999999999999999999887
No 390
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=66.59 E-value=3.1 Score=39.25 Aligned_cols=25 Identities=44% Similarity=0.509 Sum_probs=21.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+..-.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3578999999999999999987654
No 391
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=66.59 E-value=3.2 Score=38.51 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.1
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.|-.|.|||||++.+..-.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999987654
No 392
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=66.57 E-value=3.2 Score=36.16 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=20.0
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-.|.++|.+|+||||++..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 357799999999999998887653
No 393
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=66.54 E-value=3 Score=36.26 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=18.2
Q ss_pred EEEEEecCCCchhHHHHHHHH
Q 007656 181 IIGLYGMGGVGKTTLLTHINN 201 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~ 201 (594)
.|.++|..|+|||||++.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999987665
No 394
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=66.37 E-value=6.9 Score=39.48 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=22.7
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...+|.++|.+|.||||++..+....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46899999999999999988877766
No 395
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=66.27 E-value=3.9 Score=39.46 Aligned_cols=26 Identities=38% Similarity=0.622 Sum_probs=22.5
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...++.++|.+|.||||++..+....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999998887766
No 396
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=66.27 E-value=4 Score=39.08 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=22.7
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...++.++|.+|.||||++..+....
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 45789999999999999998887766
No 397
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=66.25 E-value=3.7 Score=37.05 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.6
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..|.+.|+.|.||||+++.+....
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998877
No 398
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=66.12 E-value=3.4 Score=36.09 Aligned_cols=25 Identities=44% Similarity=0.352 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.--|.++|..|+|||||++.+.+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3457899999999999998777654
No 399
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=65.97 E-value=4.9 Score=34.74 Aligned_cols=25 Identities=36% Similarity=0.486 Sum_probs=20.3
Q ss_pred CCceEEEEEecCCCchhHHHHHHHH
Q 007656 177 ESVGIIGLYGMGGVGKTTLLTHINN 201 (594)
Q Consensus 177 ~~~~~i~i~G~gG~gKttl~~~~~~ 201 (594)
.....|.++|..|+||||+...+.+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 4556788999999999999877543
No 400
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=65.75 E-value=4.1 Score=37.21 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=22.3
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..+|.|.|..|.||||+++.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998776
No 401
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=65.59 E-value=3.5 Score=35.74 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=19.8
Q ss_pred eEEEEEecCCCchhHHHHHHHHh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
..|.++|..|+|||||+..+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999887653
No 402
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=65.58 E-value=3.4 Score=36.25 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.0
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-|-|+|..|.||+||++.+....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 46789999999999999988765
No 403
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=65.57 E-value=4.2 Score=36.41 Aligned_cols=23 Identities=35% Similarity=0.313 Sum_probs=20.6
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.|.+.|+.|.||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998876
No 404
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=65.45 E-value=3.7 Score=34.62 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.-.|.++|..|+||||++..+.+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3457899999999999998877653
No 405
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=65.42 E-value=4.3 Score=36.52 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.4
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..|.+.|+.|.||||+++.+....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998876
No 406
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=65.42 E-value=85 Score=30.36 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=20.7
Q ss_pred CceEEEEEecCCCchhHHHHHHHHh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
....++++|..|+||||+...+...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999776543
No 407
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=65.33 E-value=2.7 Score=38.38 Aligned_cols=25 Identities=32% Similarity=0.306 Sum_probs=21.2
Q ss_pred CceEEEEEecCCCchhHHHHHHHHh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
.-.+|+|.|..|.||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999887654
No 408
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=65.25 E-value=3.8 Score=39.02 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-.+++++|.+|.||||++..+....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999998887766
No 409
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=65.22 E-value=4.7 Score=36.96 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.9
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..|.|.|..|.||||+++.+....
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 578999999999999999998876
No 410
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=65.21 E-value=6.1 Score=34.77 Aligned_cols=32 Identities=31% Similarity=0.530 Sum_probs=22.7
Q ss_pred HHHHH-hcCCceEEEEEecCCCchhHHHHHHHH
Q 007656 170 VWRCL-VEESVGIIGLYGMGGVGKTTLLTHINN 201 (594)
Q Consensus 170 i~~~L-~~~~~~~i~i~G~gG~gKttl~~~~~~ 201 (594)
+++.+ .......|.++|.+|+||||++..+.+
T Consensus 15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 44444 223344678999999999999987643
No 411
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=64.96 E-value=2.8 Score=39.87 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=19.5
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...+|+|.|..|.||||+++.+....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999987755
No 412
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=64.90 E-value=4.3 Score=36.73 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.6
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.|.+.|+.|.||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 413
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=64.48 E-value=55 Score=27.05 Aligned_cols=51 Identities=14% Similarity=0.219 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHHH
Q 007656 33 DNLDALETELGNLIAKKNDVMRRVVDAERQQMRRLDGVQVWVSRVDAFKTGADE 86 (594)
Q Consensus 33 ~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~v~~Wl~~~~~~~y~aed 86 (594)
+.++.+++++..++..+..++..+...+ .+.+..|..||.+...-|....+
T Consensus 96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq---~EN~~LV~RWM~rk~qEAe~MN~ 146 (152)
T 3a7p_A 96 KNTERLNAALISGTIENNVLQQKLSDLK---KEHSQLVARWLKKTEKETEAMNS 146 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777766666555444332 22346788998887665554443
No 414
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=64.30 E-value=3.8 Score=34.49 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=19.9
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.-|.++|..|+||||++..+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 457899999999999998877653
No 415
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=64.28 E-value=7.7 Score=39.96 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=21.2
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...+|.++|.+|+||||++..+....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999988877655
No 416
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=64.04 E-value=4.2 Score=38.66 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...+-++|..|.|||++|+.+.+..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567789999999999999999987
No 417
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=63.89 E-value=5.5 Score=43.67 Aligned_cols=47 Identities=21% Similarity=0.396 Sum_probs=38.5
Q ss_pred CceechhHHHHHHHHHHhcC---------CceEEEEEecCCCchhHHHHHHHHhhc
Q 007656 158 PTIVGLQSQLEQVWRCLVEE---------SVGIIGLYGMGGVGKTTLLTHINNKFL 204 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~~~---------~~~~i~i~G~gG~gKttl~~~~~~~~~ 204 (594)
..++|.+..++.+...+... ....+-++|..|+|||++|+.+.....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~ 546 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF 546 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45799999998888888541 233688999999999999999999873
No 418
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=63.81 E-value=4.2 Score=35.47 Aligned_cols=26 Identities=31% Similarity=0.255 Sum_probs=21.6
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
....|.++|..|+||||++..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45578899999999999998877654
No 419
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=63.76 E-value=4.2 Score=34.24 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=19.5
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-|.++|..|+||||+...+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999998877643
No 420
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=63.61 E-value=3.9 Score=38.19 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.0
Q ss_pred eEEEEEecCCCchhHHHHHHHHh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
.+++|.|..|.|||||++.+..-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999987654
No 421
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=63.58 E-value=4.6 Score=37.63 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=23.6
Q ss_pred cCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 176 EESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 176 ~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-..=.+++|+|..|.||||+++.+....
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 3455689999999999999999887765
No 422
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=63.48 E-value=5.1 Score=34.45 Aligned_cols=31 Identities=29% Similarity=0.403 Sum_probs=22.6
Q ss_pred HHHHHhc-CCceEEEEEecCCCchhHHHHHHH
Q 007656 170 VWRCLVE-ESVGIIGLYGMGGVGKTTLLTHIN 200 (594)
Q Consensus 170 i~~~L~~-~~~~~i~i~G~gG~gKttl~~~~~ 200 (594)
+.+.+.. .....|.++|..|+||||+...+.
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHHHHTC
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHHHHHh
Confidence 3343444 556678899999999999986644
No 423
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=63.38 E-value=8.2 Score=38.74 Aligned_cols=43 Identities=28% Similarity=0.403 Sum_probs=30.9
Q ss_pred echhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 161 VGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 161 vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+|.......+++.+....-.++.|.|..|.||||+++.+....
T Consensus 149 Lg~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 149 LGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 3444433334444444566789999999999999999988876
No 424
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=63.12 E-value=5.2 Score=36.41 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-..|.|.|..|.||||+++.+....
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999987
No 425
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=63.08 E-value=4.1 Score=34.98 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=19.5
Q ss_pred eEEEEEecCCCchhHHHHHHHHh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
..|.++|..|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999887654
No 426
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=62.99 E-value=4.2 Score=34.79 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=21.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
....|.++|..|+||||+...+.+..
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc
Confidence 34568899999999999998877653
No 427
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=62.89 E-value=8.2 Score=38.87 Aligned_cols=26 Identities=35% Similarity=0.332 Sum_probs=22.5
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...++.++|.+|.||||++..+....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999988877666
No 428
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=62.85 E-value=4.2 Score=38.60 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=21.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|-.|.|||||++.+..-.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3579999999999999999877654
No 429
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=62.76 E-value=4.9 Score=36.65 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...+|+|.|..|.||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999988765
No 430
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=62.67 E-value=8.4 Score=36.86 Aligned_cols=40 Identities=20% Similarity=0.322 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHhcC---CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 164 QSQLEQVWRCLVEE---SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 164 ~~~~~~i~~~L~~~---~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...++.+.+++..- .-..+-++|..|+|||++|..+.+..
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 33445555666542 24667799999999999999999987
No 431
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=62.52 E-value=5 Score=36.54 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...|.+.|+.|.||||+++.+....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999998876
No 432
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=62.51 E-value=4.8 Score=33.82 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=18.8
Q ss_pred EEEEecCCCchhHHHHHHHHhh
Q 007656 182 IGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~~ 203 (594)
|.++|..|+||||++..+.+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6799999999999998876653
No 433
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=62.40 E-value=4.3 Score=34.36 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=19.9
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-.|.++|..|+||||++..+....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 457899999999999998876553
No 434
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=62.22 E-value=4.5 Score=35.04 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.--|.++|..|+||||++..+....
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457899999999999998877653
No 435
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=61.98 E-value=4.4 Score=34.16 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=17.6
Q ss_pred EEEEEecCCCchhHHHHHHHH
Q 007656 181 IIGLYGMGGVGKTTLLTHINN 201 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~ 201 (594)
-|.++|..|+||||+++.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999977643
No 436
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=61.88 E-value=4.5 Score=34.20 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.0
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-.|.++|..|+||||++..+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 357899999999999998877654
No 437
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=61.81 E-value=4.3 Score=34.37 Aligned_cols=22 Identities=32% Similarity=0.712 Sum_probs=18.8
Q ss_pred EEEEEecCCCchhHHHHHHHHh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~ 202 (594)
.|.++|..|+||||++..+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4779999999999999887654
No 438
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=61.65 E-value=5.3 Score=33.72 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=18.5
Q ss_pred eEEEEEecCCCchhHHHHHHHH
Q 007656 180 GIIGLYGMGGVGKTTLLTHINN 201 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~ 201 (594)
--|.++|..|+||||++..+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4578999999999999987653
No 439
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=61.65 E-value=4.5 Score=34.11 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.1
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-|.++|..|+||||++..+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47789999999999998876653
No 440
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=61.48 E-value=4.5 Score=35.13 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=19.2
Q ss_pred ceEEEEEecCCCchhHHHHHHHHh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
---|.++|..|+|||||+..+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999766554
No 441
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=61.29 E-value=5.1 Score=38.26 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=23.0
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 177 ~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..=.+++|+|..|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 355689999999999999999988765
No 442
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=61.20 E-value=4.7 Score=39.57 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=22.1
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.=.+++|.|..|.|||||++.+..-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 34679999999999999999887654
No 443
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=61.06 E-value=3.9 Score=35.91 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=19.2
Q ss_pred ceEEEEEecCCCchhHHHHHHHHh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
.--|.++|.+|+|||||++.+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 345789999999999998866554
No 444
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=61.05 E-value=4.9 Score=39.37 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.||||+++.+..-.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3578999999999999999988765
No 445
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=61.00 E-value=5 Score=34.97 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=21.4
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHh
Q 007656 177 ESVGIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 177 ~~~~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
.....|.++|..|+||||+...+.+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567889999999999999887654
No 446
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=60.95 E-value=3.7 Score=39.35 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=21.9
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.=.+++|+|-.|.|||||++.+..-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 44689999999999999999876654
No 447
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=60.93 E-value=5.3 Score=38.02 Aligned_cols=25 Identities=32% Similarity=0.390 Sum_probs=21.6
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..++.++|.+|.||||++..+....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999988877665
No 448
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=60.91 E-value=4.7 Score=35.09 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.--|.++|..|+|||||+..+.+..
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC
Confidence 4457899999999999997766543
No 449
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=60.88 E-value=4.5 Score=34.41 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=19.7
Q ss_pred ceEEEEEecCCCchhHHHHHHHHh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
.--|.++|..|+|||||+..+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 345889999999999999876654
No 450
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=60.41 E-value=5.2 Score=33.52 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=19.1
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-|.++|..|+||||++..+....
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999988776543
No 451
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=60.38 E-value=5 Score=39.30 Aligned_cols=25 Identities=40% Similarity=0.533 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+..-.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3578999999999999999988654
No 452
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=60.36 E-value=4.9 Score=34.42 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=21.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
....|.++|..|+||||++..+....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 45668899999999999998776643
No 453
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=60.31 E-value=54 Score=33.23 Aligned_cols=87 Identities=13% Similarity=0.139 Sum_probs=53.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCcccccchhhhHHHHHHHHHHHHHHHHHHcCccceeccccccCCC
Q 007656 67 LDGVQVWVSRVDAFKTGADELITDGSEEIGKLCVGGYCSKNCRSSYKFGKQVARKLRDVETLIAEGVFEAVATEVVPERA 146 (594)
Q Consensus 67 ~~~v~~Wl~~~~~~~y~aed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (594)
...++.|.+++-++.-.+|-.+|--+ ... ...+..+..++..+.++++++.....
T Consensus 162 ~~~~~~~r~~l~~~~a~iEa~iDf~e-d~~-----------~~~~~~~~~~i~~l~~~l~~~~~~~~------------- 216 (462)
T 3geh_A 162 AHPIRQLRANCLDILAEIEARIDFEE-DLP-----------PLDDEAIISDIENIAAEISQLLATKD------------- 216 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSS-SSC-----------CCCTTTHHHHHHHHHHHHHHHTTTHH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccc-cCC-----------hhhHHHHHHHHHHHHHHHHHHHHHhh-------------
Confidence 35678899999998888888776432 111 11223445566666666665433210
Q ss_pred CCCccccCCCCCceechhHHHHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 147 PEPVADKRPIEPTIVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 147 ~~~~~~~~~~~~~~vG~~~~~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.| + .+ .+.++ |.|+|..|+|||||...+....
T Consensus 217 --------------~~------~---~~-r~~~k-V~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 217 --------------KG------E---LL-RTGLK-VAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp --------------HH------H---HH-HHCEE-EEEEECTTSSHHHHHHHHHHHH
T ss_pred --------------hh------h---hh-cCCCE-EEEEcCCCCCHHHHHHHHhCCC
Confidence 00 0 11 12343 7899999999999998877654
No 454
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=60.27 E-value=4.9 Score=34.28 Aligned_cols=26 Identities=31% Similarity=0.295 Sum_probs=21.4
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
....|.++|..|+||||++..+....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 34568899999999999998877654
No 455
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=60.09 E-value=4.7 Score=38.51 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=19.4
Q ss_pred CceEEEEEecCCCchhHHHHHHHHh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
.+. |+++|-.|+|||||++.++..
T Consensus 18 ~~~-I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 18 EFT-LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp CEE-EEEEEETTSSHHHHHHHHHC-
T ss_pred CEE-EEEECCCCCCHHHHHHHHhCC
Confidence 344 489999999999999997764
No 456
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=60.00 E-value=5.2 Score=34.13 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=19.8
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
--|.++|..|+||||++..+.+..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhCc
Confidence 457899999999999998876543
No 457
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=59.95 E-value=5 Score=35.90 Aligned_cols=23 Identities=30% Similarity=0.265 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHH
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINN 201 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~ 201 (594)
=.++.|.|-.|.||||++..+..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999988776
No 458
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=59.94 E-value=5.3 Score=39.00 Aligned_cols=30 Identities=33% Similarity=0.442 Sum_probs=24.3
Q ss_pred HhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 174 LVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 174 L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+.+...+++-+.|-||+||||++..+.-..
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~l 42 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQL 42 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 334567888889999999999998877766
No 459
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=59.89 E-value=5.7 Score=34.34 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.2
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+..|+|..|.||||++..++--.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 378899999999999999988765
No 460
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=59.88 E-value=5 Score=34.21 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=20.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.--|.++|..|+||||++..+....
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 3457899999999999998876543
No 461
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=59.84 E-value=5.7 Score=35.77 Aligned_cols=24 Identities=38% Similarity=0.337 Sum_probs=20.9
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++.|.|-.|.||||++..+....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 578899999999999999887654
No 462
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=59.77 E-value=5.1 Score=34.51 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=21.2
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..-.|.++|..|+||||++..+.+..
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34567899999999999998877653
No 463
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=59.76 E-value=5.5 Score=33.58 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=19.7
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
--|.++|..|+||||++..+....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999998877643
No 464
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=59.66 E-value=7.7 Score=38.81 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.8
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...+++|+|-.|.||||+++.+..-.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 56699999999999999999988743
No 465
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=59.61 E-value=4.4 Score=40.90 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=21.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..+|.++|.+|+||||++..+....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988877665
No 466
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=59.53 E-value=7.8 Score=36.96 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 167 LEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 167 ~~~i~~~L~~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
++++.+.+.. .++++.|..|.|||||++.+. ..
T Consensus 156 i~~L~~~l~G---~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLEG---FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTTT---CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhccC---cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 4455555543 478899999999999999988 54
No 467
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=59.50 E-value=5.5 Score=38.98 Aligned_cols=26 Identities=27% Similarity=0.393 Sum_probs=22.5
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...+++|+|..|.||||+...+....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46789999999999999998887654
No 468
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=59.48 E-value=5.9 Score=34.49 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=20.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.--|.++|..|+|||||+..+.+..
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 4457899999999999998877654
No 469
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=59.35 E-value=5.9 Score=33.79 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=20.8
Q ss_pred CceEEEEEecCCCchhHHHHHHHHh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
....|.++|..|+||||++..+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999887654
No 470
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=59.31 E-value=5.3 Score=33.80 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=19.9
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..|.++|..|+||||++..+....
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999998876543
No 471
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=59.30 E-value=5.7 Score=34.66 Aligned_cols=23 Identities=39% Similarity=0.638 Sum_probs=19.6
Q ss_pred eEEEEEecCCCchhHHHHHHHHh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
..|.++|..|+||||+...+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999887664
No 472
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=59.29 E-value=5.4 Score=34.40 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=20.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.-.|.++|..|+||||++..+.+..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4567899999999999998877654
No 473
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=59.09 E-value=4.8 Score=35.26 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=20.3
Q ss_pred hcCCceEEEEEecCCCchhHHHHHHH
Q 007656 175 VEESVGIIGLYGMGGVGKTTLLTHIN 200 (594)
Q Consensus 175 ~~~~~~~i~i~G~gG~gKttl~~~~~ 200 (594)
.....-.|.++|..|+||||++..+.
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHC
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHH
Confidence 33445568899999999999987754
No 474
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=59.04 E-value=5.3 Score=34.50 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=19.6
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
-|.++|..|+||||++..+.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999998887654
No 475
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=59.02 E-value=4.6 Score=34.59 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=19.6
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
--|.++|..|+||||++..+.+..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 357899999999999998876643
No 476
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=59.02 E-value=6.4 Score=37.87 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.8
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+|.|.|..|.||||++..+....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478899999999999999998876
No 477
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=59.01 E-value=5.4 Score=39.12 Aligned_cols=25 Identities=32% Similarity=0.487 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+..-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3578999999999999999988754
No 478
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=58.88 E-value=6.9 Score=32.96 Aligned_cols=24 Identities=38% Similarity=0.384 Sum_probs=19.9
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
--|.++|..|+||||++..+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 457899999999999998876543
No 479
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=58.79 E-value=4.3 Score=37.22 Aligned_cols=22 Identities=36% Similarity=0.600 Sum_probs=19.5
Q ss_pred EEEEecCCCchhHHHHHHHHhh
Q 007656 182 IGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 182 i~i~G~gG~gKttl~~~~~~~~ 203 (594)
|++.|-||+||||++..+....
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~l 24 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIM 24 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 6778999999999998888777
No 480
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=58.77 E-value=5.3 Score=34.83 Aligned_cols=26 Identities=38% Similarity=0.424 Sum_probs=21.1
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
..--|.++|..|+|||||+..+....
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 34568899999999999998877653
No 481
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=58.77 E-value=5.5 Score=39.13 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
=.+++|.|..|.|||||++.+..-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3578999999999999999988755
No 482
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=58.61 E-value=5.6 Score=34.11 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...|.++|..|+|||||+..+.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4568899999999999988877543
No 483
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=58.55 E-value=6 Score=38.63 Aligned_cols=34 Identities=35% Similarity=0.368 Sum_probs=26.5
Q ss_pred HHHHHh-cCCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 170 VWRCLV-EESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 170 i~~~L~-~~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
+++.+. -..=.+++|+|-.|.||||+++.+.+..
T Consensus 61 ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 61 AIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444442 2355689999999999999999999986
No 484
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=58.51 E-value=4.8 Score=34.84 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=18.7
Q ss_pred EEEEEecCCCchhHHHHHHHHh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~ 202 (594)
.|.++|..|+||||++..+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999877654
No 485
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=58.50 E-value=5.5 Score=39.29 Aligned_cols=24 Identities=38% Similarity=0.383 Sum_probs=21.3
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.+++|.|-.|.|||||++.+..-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 578999999999999999988755
No 486
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=58.47 E-value=6.8 Score=42.87 Aligned_cols=46 Identities=30% Similarity=0.346 Sum_probs=36.4
Q ss_pred CceechhHHHHHHHHHHh----c---------CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 158 PTIVGLQSQLEQVWRCLV----E---------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 158 ~~~vG~~~~~~~i~~~L~----~---------~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.++.|.+..+++|.+.+. . ...+-|=++|..|.|||++|+.+.+..
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 457889888888877652 1 245678899999999999999998876
No 487
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=58.47 E-value=6 Score=34.34 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...|.++|..|+||||++..+....
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 4568899999999999998876653
No 488
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=58.44 E-value=6.5 Score=33.92 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=20.7
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHh
Q 007656 177 ESVGIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 177 ~~~~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
.....|.++|..|+||||+...+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 45667889999999999998776543
No 489
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=58.40 E-value=5.2 Score=34.17 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=20.2
Q ss_pred CceEEEEEecCCCchhHHHHHHHHh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
..--|.++|..|+||||++..+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4556889999999999999876543
No 490
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=58.37 E-value=6 Score=34.82 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=21.7
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...-|.++|..|+||||++..+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 45668899999999999998877654
No 491
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=58.35 E-value=5.3 Score=35.26 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=19.9
Q ss_pred eEEEEE-ecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLY-GMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~-G~gG~gKttl~~~~~~~~ 203 (594)
++|+++ +-||+||||++..+....
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~l 26 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATAL 26 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHH
Confidence 578887 679999999988877766
No 492
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=58.28 E-value=5.6 Score=34.12 Aligned_cols=23 Identities=35% Similarity=0.309 Sum_probs=19.1
Q ss_pred eEEEEEecCCCchhHHHHHHHHh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~ 202 (594)
--|.++|..|+||||+...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45779999999999999877654
No 493
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=58.24 E-value=4.4 Score=35.64 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=19.2
Q ss_pred CceEEEEEecCCCchhHHHHHHH
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHIN 200 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~ 200 (594)
..-.|.++|.+|+|||||+..+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 45678899999999999987753
No 494
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=58.22 E-value=5.6 Score=34.23 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
...|.++|..|+||||++..+....
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4567899999999999998877653
No 495
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=58.19 E-value=5.6 Score=39.19 Aligned_cols=26 Identities=35% Similarity=0.337 Sum_probs=22.2
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.=.+++|.|..|.|||||++.+..-.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 33578999999999999999988754
No 496
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=58.08 E-value=5.7 Score=34.64 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCchhHHHHHHHHhh
Q 007656 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 179 ~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.--|.++|..|+||||++..+....
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4468899999999999998877653
No 497
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=58.07 E-value=7.4 Score=34.67 Aligned_cols=24 Identities=29% Similarity=0.564 Sum_probs=21.7
Q ss_pred eEEEEEecCCCchhHHHHHHHHhh
Q 007656 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 180 ~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.-|.|-|..|.||||.++.+...+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 358899999999999999999887
No 498
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=58.04 E-value=5.6 Score=34.20 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=18.7
Q ss_pred EEEEEecCCCchhHHHHHHHHh
Q 007656 181 IIGLYGMGGVGKTTLLTHINNK 202 (594)
Q Consensus 181 ~i~i~G~gG~gKttl~~~~~~~ 202 (594)
-|.++|..|+||||++..+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999877654
No 499
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=57.99 E-value=5.5 Score=35.09 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=21.4
Q ss_pred CceEEEEEecCCCchhHHHHHHHHhh
Q 007656 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 178 ~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
....|.++|..|+||||++..+....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 45568899999999999998876653
No 500
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=57.91 E-value=6.5 Score=35.04 Aligned_cols=27 Identities=30% Similarity=0.249 Sum_probs=22.2
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHhh
Q 007656 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (594)
Q Consensus 177 ~~~~~i~i~G~gG~gKttl~~~~~~~~ 203 (594)
.....|.++|..|+||||++..+....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678899999999999998877654
Done!