BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007657
(594 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0WQ57|AUXI2_ARATH Auxilin-related protein 2 OS=Arabidopsis thaliana GN=At4g12770 PE=1
SV=1
Length = 891
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 53/80 (66%), Positives = 66/80 (82%)
Query: 498 IDVQIRKWSNGKEGNIRSLLSTLQYILWPASGWKPVPLVDIIEGNAVKRSYQKALLCLHP 557
+DV+IR+W GKEGN+R+LLSTLQY+LWP GW+PV L D+I G +VK+ Y+KA LC+HP
Sbjct: 796 LDVEIRRWGAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITGASVKKVYRKATLCIHP 855
Query: 558 DKLQQKGATCQQTYIAEKVL 577
DK+QQKGA QQ YIAEKV
Sbjct: 856 DKVQQKGANLQQKYIAEKVF 875
>sp|Q9SU08|AUXI1_ARATH Auxilin-related protein 1 OS=Arabidopsis thaliana GN=At4g12780 PE=1
SV=2
Length = 904
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 51/80 (63%), Positives = 65/80 (81%)
Query: 498 IDVQIRKWSNGKEGNIRSLLSTLQYILWPASGWKPVPLVDIIEGNAVKRSYQKALLCLHP 557
+DV+I++W GKEGN+R+LLSTLQY+LWP GW+PV L D+I +VK+ Y+KA LC+HP
Sbjct: 809 LDVEIKRWGAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITAASVKKVYRKATLCIHP 868
Query: 558 DKLQQKGATCQQTYIAEKVL 577
DK+QQKGA QQ YIAEKV
Sbjct: 869 DKVQQKGANLQQKYIAEKVF 888
>sp|O13773|UCP7_SCHPO UBA domain-containing protein 7 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ucp7 PE=4 SV=1
Length = 697
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 502 IRKWSNGKEGNIRSLLSTLQYILWPASGWKPVPLVDIIEGNAVKRSYQKALLCLHPDKLQ 561
+ KW GKE N+R+LL++L ILWP W+ V L +++ VK +Y KA+ +HPDKL
Sbjct: 607 VNKWKEGKESNLRALLASLDTILWPECRWQKVSLSELVLPKKVKIAYMKAVSRVHPDKLP 666
Query: 562 QKGATCQQTYIAEKVL 577
Q+ + Q IAE
Sbjct: 667 QQTSVEHQ-LIAESAF 681
>sp|Q27974|AUXI_BOVIN Putative tyrosine-protein phosphatase auxilin OS=Bos taurus
GN=DNAJC6 PE=1 SV=1
Length = 910
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 500 VQIRKWSNGKEGNIRSLLSTLQYILWPA-SGWKPVPLVDIIEGNAVKRSYQKALLCLHPD 558
++I +W GKE NIR+LLST+ +LW + WKPV + D++ VK+ Y+KA+L +HPD
Sbjct: 817 LKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPD 876
Query: 559 K 559
K
Sbjct: 877 K 877
>sp|O75061|AUXI_HUMAN Putative tyrosine-protein phosphatase auxilin OS=Homo sapiens
GN=DNAJC6 PE=1 SV=3
Length = 913
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 500 VQIRKWSNGKEGNIRSLLSTLQYILWPA-SGWKPVPLVDIIEGNAVKRSYQKALLCLHPD 558
++I +W GKE NIR+LLST+ +LW + WKPV + D++ VK+ Y+KA+L +HPD
Sbjct: 820 LKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPD 879
Query: 559 K 559
K
Sbjct: 880 K 880
>sp|Q80TZ3|AUXI_MOUSE Putative tyrosine-protein phosphatase auxilin OS=Mus musculus
GN=Dnajc6 PE=2 SV=2
Length = 938
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 500 VQIRKWSNGKEGNIRSLLSTLQYILWPA-SGWKPVPLVDIIEGNAVKRSYQKALLCLHPD 558
++I +W GKE NIR+LLST+ +LW + WKPV + D++ VK+ Y++A+L +HPD
Sbjct: 845 LKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRRAVLVVHPD 904
Query: 559 K 559
K
Sbjct: 905 K 905
>sp|P97874|GAK_RAT Cyclin-G-associated kinase OS=Rattus norvegicus GN=Gak PE=2 SV=1
Length = 1305
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 4/82 (4%)
Query: 479 TKDDNKLRKLGNDPQEFQAIDVQIRKWSNGKEGNIRSLLSTLQYILWPA-SGWKPVPLVD 537
T + + ++L D F+ +++ W GKE NIR+LLSTL +LW S W PV + D
Sbjct: 1194 TMAEMRKQELARDTDPFK---LKLLDWIEGKERNIRALLSTLHTVLWDGESRWTPVSMAD 1250
Query: 538 IIEGNAVKRSYQKALLCLHPDK 559
++ VK+ Y++A+L +HPDK
Sbjct: 1251 LVTPEQVKKQYRRAVLVVHPDK 1272
>sp|Q99KY4|GAK_MOUSE Cyclin-G-associated kinase OS=Mus musculus GN=Gak PE=1 SV=2
Length = 1305
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 6/71 (8%)
Query: 490 NDPQEFQAIDVQIRKWSNGKEGNIRSLLSTLQYILWPA-SGWKPVPLVDIIEGNAVKRSY 548
DP + + +D W GKE NIR+LLSTL +LW S W PV + D++ VK+ Y
Sbjct: 1207 TDPLKLKLLD-----WIEGKERNIRALLSTLHTVLWDGESRWTPVSMADLVTPEQVKKQY 1261
Query: 549 QKALLCLHPDK 559
++A+L +HPDK
Sbjct: 1262 RRAVLVVHPDK 1272
>sp|O14976|GAK_HUMAN Cyclin-G-associated kinase OS=Homo sapiens GN=GAK PE=1 SV=2
Length = 1311
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 6/71 (8%)
Query: 490 NDPQEFQAIDVQIRKWSNGKEGNIRSLLSTLQYILWPA-SGWKPVPLVDIIEGNAVKRSY 548
DP + + +D W GKE NIR+LLSTL +LW S W PV + D++ VK+ Y
Sbjct: 1213 TDPLKLKLLD-----WIEGKERNIRALLSTLHTVLWDGESRWTPVGMADLVAPEQVKKHY 1267
Query: 549 QKALLCLHPDK 559
++A+L +HPDK
Sbjct: 1268 RRAVLAVHPDK 1278
>sp|Q06677|SWA2_YEAST Auxilin-like clathrin uncoating factor SWA2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SWA2 PE=1
SV=1
Length = 668
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 501 QIRKWSNGKEGNIRSLLSTLQYIL-WPASGWKPVPLVDIIEGNAVKRSYQKALLCLHPDK 559
+I W +GK+ +IR LL+ L +L W WK V + D++ VK +Y KA+ HPDK
Sbjct: 577 KISSWKDGKDDDIRHLLANLSSLLTW--CNWKDVSMQDLVMPKRVKITYMKAVAKTHPDK 634
Query: 560 LQQKGATCQQTYIAEKVL 577
+ + + + IAE +
Sbjct: 635 IPE-SLSLENKMIAENIF 651
>sp|Q85FG3|MNME_CYAME Probable tRNA modification GTPase mnmE OS=Cyanidioschyzon merolae
GN=mnmE PE=3 SV=1
Length = 446
Score = 33.1 bits (74), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 464 DIDKSFQGNSLVNQVTKDDNKLRKLGNDPQEFQAIDVQIRKW---SNGKEGNIRSLLSTL 520
D+D +F NS +N +T N+++ L N P +F +Q+ + GK +L+
Sbjct: 183 DLDNTFVFNSFINSLTNIINQIQNLLNTPSKFYRYGIQVALLGPANAGKSTLFNALIGEE 242
Query: 521 QYILWPASG 529
+ I+ P +G
Sbjct: 243 RSIVTPIAG 251
>sp|Q8CNL6|ILVD_STAES Dihydroxy-acid dehydratase OS=Staphylococcus epidermidis (strain
ATCC 12228) GN=ilvD PE=3 SV=1
Length = 562
Score = 32.7 bits (73), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 197 SFRIEHNKQNDTAPPDTSTENTVETWPTADPGDATLENTGEETKSHSQSEIGLHNELEKV 256
+FR+ N +ND P D T++ ++ D NT T + + +E G+ +LE++
Sbjct: 235 AFRLVENIKNDIKPRDIITQDAIDDAFALDMAMGGSTNTVLHTLAIA-NEAGIDYDLERI 293
Query: 257 SVVAEEA-HKPELKPLCSLFYNDHYERS------NEEMNKNASEKESKVKCTKKSSVVPY 309
+ +A++ + ++ P S +D +E NE M K+ + ++ T K+
Sbjct: 294 NEIAKKTPYLSKIAPSSSYSMHDVHEAGGVPAIINELMKKDGTLHPDRLTVTGKTLRENN 353
Query: 310 FSKNKKKQDV 319
KN K DV
Sbjct: 354 EGKNIKNFDV 363
>sp|Q5HMG3|ILVD_STAEQ Dihydroxy-acid dehydratase OS=Staphylococcus epidermidis (strain
ATCC 35984 / RP62A) GN=ilvD PE=3 SV=1
Length = 562
Score = 32.7 bits (73), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 197 SFRIEHNKQNDTAPPDTSTENTVETWPTADPGDATLENTGEETKSHSQSEIGLHNELEKV 256
+FR+ N +ND P D T++ ++ D NT T + + +E G+ +LE++
Sbjct: 235 AFRLVENIKNDIKPRDIITQDAIDDAFALDMAMGGSTNTVLHTLAIA-NEAGIDYDLERI 293
Query: 257 SVVAEEA-HKPELKPLCSLFYNDHYERS------NEEMNKNASEKESKVKCTKKSSVVPY 309
+ +A++ + ++ P S +D +E NE M K+ + ++ T K+
Sbjct: 294 NEIAKKTPYLSKIAPSSSYSMHDVHEAGGVPAIINELMKKDGTLHPDRLTVTGKTLRENN 353
Query: 310 FSKNKKKQDV 319
KN K DV
Sbjct: 354 EGKNIKNFDV 363
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.127 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 233,229,240
Number of Sequences: 539616
Number of extensions: 10389954
Number of successful extensions: 27201
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 205
Number of HSP's that attempted gapping in prelim test: 25826
Number of HSP's gapped (non-prelim): 802
length of query: 594
length of database: 191,569,459
effective HSP length: 123
effective length of query: 471
effective length of database: 125,196,691
effective search space: 58967641461
effective search space used: 58967641461
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)