BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007659
(594 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LIA4|RIK_ARATH Protein RIK OS=Arabidopsis thaliana GN=RIK PE=1 SV=2
Length = 578
Score = 482 bits (1240), Expect = e-135, Method: Compositional matrix adjust.
Identities = 307/629 (48%), Positives = 386/629 (61%), Gaps = 108/629 (17%)
Query: 1 MTEDSHHTFSSDDSAISTDGSSQTRQRKKRKWDQPAESLINFPLASFGISLPGV-PVAPV 59
MTED+ + +T+ +S+TRQR+KRKWD+PAE L+ + G++ P + P+
Sbjct: 1 MTEDNDEARVPLSDSSTTNDASRTRQRRKRKWDKPAEQLV-----AAGVAFPQLLPLGNT 55
Query: 60 VPAPAAAAFFTNPPVASGATVPPVVLQGPLPPKFNQPKVQDELIIAREIVINDSESSVRY 119
+ P+ + P+ +VP V PK NQPK+QDE+IIAREIVIND+E+S+R+
Sbjct: 56 MNVPSMS------PLLQTLSVPLAV------PKVNQPKIQDEVIIAREIVINDAEASLRH 103
Query: 120 KLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHL--KETAERILAV 177
+LTKR TQE+IQ+ TGAVVITRGKYR PNAPPDGEKPLYLHISA A L KET ERILAV
Sbjct: 104 RLTKRSTQEDIQRSTGAVVITRGKYRPPNAPPDGEKPLYLHISAAAQLQLKETTERILAV 163
Query: 178 DHAAAMVEEMLKQ---GHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNL 234
D AAAM+EEM+KQ G LQTV + +ST V+LGF+AD S N+AARIRGPN
Sbjct: 164 DRAAAMIEEMMKQKSISQIGSVGLQTV-----KMLSTCVYLGFEADPSSNVAARIRGPN- 217
Query: 235 SLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLH 294
DQYINHIMNETGATV+LRGRGSG+ E G+E PLH
Sbjct: 218 ----------------------DQYINHIMNETGATVVLRGRGSGSLENQHGDEAQLPLH 255
Query: 295 LFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQ 354
L LS +NPKS+++AKRLAENL+DTIS E GASRVSS KVY AVPPPQQL++G G E
Sbjct: 256 LLLSGSNPKSIDDAKRLAENLMDTISVEFGASRVSSSKVYGAVPPPQQLISGAPGSDQEN 315
Query: 355 KLNAGSAVILTSTVNLSSVPLAPS---VPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYP 411
+ N S L +++ +++ P A S V T++Y Q ++QS GI N G
Sbjct: 316 Q-NLISTYGLMTSIPITAPPYAVSSFPVTPATSLYPQFPVMQSLGISNG--------GPS 366
Query: 412 QPVSTGGTSYSGYEGIYPQATPLQQVALALRQSSSPLTSLVAPTASVSSTATTSTTSTAM 471
QPV+ GGTSYSGY GIYPQATPLQQVA L+QS SP+ S V PT +++T+ + + A
Sbjct: 367 QPVA-GGTSYSGYAGIYPQATPLQQVAQVLKQSISPVISTVPPTM-LTATSLSIPSDNAS 424
Query: 472 SEKEKRPPQKRKFQELPVGSKGPAKHNQGSEIPNRSEL--SANLDVRNV----------- 518
+E E+RPP+KRKFQELP K P K Q SE+ ++ SAN VR+
Sbjct: 425 NEMERRPPRKRKFQELPADCKVPEKDKQQSELAMTGDVTPSAN-RVRSPPSPRSVMPPPP 483
Query: 519 ---------SNMPPPSKLVQPVDNGMPHPPPRN--MPP-------PPPPKFTLLAPTAKL 560
M PPS M PPPR+ M P PPPP+FTL ++L
Sbjct: 484 PKTIAPPPSKTMSPPS------SKSMLPPPPRSKTMSPLSSKSMLPPPPRFTLTTQRSRL 537
Query: 561 HDKNNSLNKTKSDNIPVVSDTLVKLMEYG 589
D + S+ K V DTL+KLMEYG
Sbjct: 538 QDNHISVKKPNP-----VPDTLIKLMEYG 561
>sp|Q32SG5|RIK_MAIZE Protein RIK OS=Zea mays PE=1 SV=1
Length = 616
Score = 401 bits (1031), Expect = e-111, Method: Compositional matrix adjust.
Identities = 263/557 (47%), Positives = 330/557 (59%), Gaps = 64/557 (11%)
Query: 1 MTEDSHHTFSSDDSAISTDGSSQTRQRKKRKWDQPAESLI----------NFPLASFGIS 50
MTED H + + +A Q+ +RKKRKWDQPAE L+ P+ +FG +
Sbjct: 1 MTEDRAHKVADEPAA----SGRQSPERKKRKWDQPAEDLVSAAVTAAAVSGMPVMNFG-A 55
Query: 51 LPGVPVAPVVPAPAAAAFFTNPPVASGA--TVPPVVLQ--GPLPPKFNQPKVQDELIIAR 106
LPGV V P V A AA + PV + P VLQ K +Q K+ DE +IAR
Sbjct: 56 LPGV-VLPGVTAYGAATLPSVVPVPYSLPPHIAPSVLQNAAAAAQKLSQAKIPDE-VIAR 113
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAH 166
EIVIND++ SVRYKLTKR TQEEIQKCT V+ITRGKY PN PDGEKPLYLHISAG+
Sbjct: 114 EIVINDADPSVRYKLTKRQTQEEIQKCTNTVIITRGKYHPPNLLPDGEKPLYLHISAGSQ 173
Query: 167 LKETAERILAVDHAAAMVEEMLKQGHAGFPT---LQTVMGNGVQAMSTSVFLGFDADASL 223
LK+TAERI AVD AA+M+EE+LKQG + G V+ S SVFLGFDAD SL
Sbjct: 174 LKDTAERIKAVDRAASMIEEILKQGTTSESISVPFSSSTGQAVRPFSASVFLGFDADPSL 233
Query: 224 NIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEG 283
NI ARIRGPN DQYINHIM ETG TV+LRG+ S N
Sbjct: 234 NITARIRGPN-----------------------DQYINHIMKETGVTVVLRGKDSENLGS 270
Query: 284 LQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQL 343
E QPLHL+L+S + K+LE AK LAENLLDT++AE GASR+SS KVY AVPPPQQL
Sbjct: 271 CHSEASQQPLHLYLTSMHLKNLEAAKVLAENLLDTVAAEFGASRISSSKVYGAVPPPQQL 330
Query: 344 LTGIQGFGNEQKLN--AGSAVILTSTVNLSSVPLAPSVPGVTTVYSQGMMLQSGGILNSV 401
L G+ G + ++ G V+ +T + +S + + V + + +QSG S
Sbjct: 331 LAGVDTSGTKSDVHYIVGPNVLSGATHSFASTGV------IAPVVAPAVTVQSGAPTYSG 384
Query: 402 QPQQNIVGYPQPVSTGGTSYSGYEGIYPQATPLQQVALALRQSSSPLTSLVAPTASVSST 461
P + + YP P + GG YSGY IYPQATPLQQ+A L+ +SS T V P S ++
Sbjct: 385 VPLPSNMAYPIPPANGGAFYSGYGDIYPQATPLQQLAFTLKHASSSATQAV-PVTSTPTS 443
Query: 462 ATTSTTSTAMSEKEKRPPQKRKFQELPVGSKGPAKHNQGSEIPN---RSELSANLDVRNV 518
T S +E +KR +RKFQELPV SKGPA +Q S+ + ++ L ++ ++ +
Sbjct: 444 MATKGNSILDAEMDKR--SRRKFQELPV-SKGPATESQNSQQGSKFVKTGLDSSGNIGSS 500
Query: 519 SNMPPPSKLVQPVDNGM 535
S PP K V P NGM
Sbjct: 501 SIAPP--KKVHPGSNGM 515
>sp|Q2NLB0|K0907_XENLA UPF0469 protein KIAA0907 homolog OS=Xenopus laevis PE=2 SV=1
Length = 585
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 118/258 (45%), Gaps = 64/258 (24%)
Query: 97 KVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPD---G 153
K +D+L++A E+ IND + R LT+ TQ+EI + +GA V TRG+Y G
Sbjct: 102 KSKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEISRMSGAAVSTRGRYMTAEEKAKIGPG 160
Query: 154 EKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQG--------------------HA 193
++PLYLH+ +T E VD A ++E++ G H
Sbjct: 161 DRPLYLHVQG-----QTRE---LVDRAVNRIKEIITSGVVKAATGSSPTFNGATVTVYHQ 212
Query: 194 GFPTLQTV--------MGNGVQAMSTSVFLGFD-ADASLNIAARIRGPNLSLTSPYNWER 244
P V +G+ + +F+G + A A+ N+ ++ GP S
Sbjct: 213 PAPVTPVVSAAPPKPQFQSGMHYVQDKLFVGLEHAVATFNVKEKVEGPGCS--------- 263
Query: 245 LFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKS 304
Y+ HI ETGA V LRG+GSG E G E +P+++++S P+
Sbjct: 264 --------------YLQHIQMETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEG 309
Query: 305 LEEAKRLAENLLDTISAE 322
L AK+L ENLL T+ AE
Sbjct: 310 LAAAKKLCENLLQTVHAE 327
>sp|Q6NZ18|K0907_DANRE UPF0469 protein KIAA0907 homolog OS=Danio rerio PE=2 SV=1
Length = 570
Score = 108 bits (271), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 118/261 (45%), Gaps = 72/261 (27%)
Query: 97 KVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYR--------LPN 148
K++D+L++A E+ IND + R LT+ TQ+EI + +GA V TRG++ LP+
Sbjct: 74 KLKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEISRVSGAAVSTRGRFMTVEEKSKALPS 132
Query: 149 APPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGFPTLQTVMG----- 203
++PLYLH+ + R L VD A ++E++ G T T G
Sbjct: 133 -----DRPLYLHV-------QGQTRDL-VDKAVNRIKEIITNGVVKAATNSTYSGATVTV 179
Query: 204 ---------------------NGVQAMSTSVFLGFD-ADASLNIAARIRGPNLSLTSPYN 241
G+ + VF+G D A N+ R+ GP+ S
Sbjct: 180 YQQSGPSVPTIPSAPHKPHYPGGMHYVQDKVFVGLDQALQGFNVKERVEGPSCS------ 233
Query: 242 WERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNN 301
++ HI ETGA V LRG+GSG E G E +P+++++S
Sbjct: 234 -----------------FLQHIQAETGAKVFLRGKGSGCLEPASGREAFEPMYIYISHPK 276
Query: 302 PKSLEEAKRLAENLLDTISAE 322
P+ L AK L ENLL T+ AE
Sbjct: 277 PEGLASAKTLCENLLQTVHAE 297
>sp|A0JM64|K0907_XENTR UPF0469 protein KIAA0907 homolog OS=Xenopus tropicalis PE=2 SV=1
Length = 612
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 117/255 (45%), Gaps = 61/255 (23%)
Query: 97 KVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPD---G 153
K +D+L++A E+ IND + R LT+ TQ+EI + +GA V TRG+Y G
Sbjct: 102 KSKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEISRMSGAAVSTRGRYMTAEEKAKIGPG 160
Query: 154 EKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQG-----HAGFPTLQTV------- 201
++PLYLH+ +T E VD A ++E++ G PT
Sbjct: 161 DRPLYLHVQG-----QTRE---LVDRAVNRIKEIITNGVVKAATGSSPTFNGATVTVYHQ 212
Query: 202 -------------MGNGVQAMSTSVFLGFD-ADASLNIAARIRGPNLSLTSPYNWERLFF 247
+G+ + +F+G + A A+ N+ ++ GP S
Sbjct: 213 PAPVAPVAPPKPQFQSGMHYVQDKLFVGLEHAVATFNVKEKVEGPGCS------------ 260
Query: 248 CWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEE 307
Y+ HI ETGA V LRG+GSG E G E +P+++++S P+ L
Sbjct: 261 -----------YLQHIQLETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAA 309
Query: 308 AKRLAENLLDTISAE 322
AK+L ENLL T+ +E
Sbjct: 310 AKKLCENLLQTVHSE 324
>sp|Q3TCX3|K0907_MOUSE UPF0469 protein KIAA0907 OS=Mus musculus GN=Kiaa0907 PE=2 SV=1
Length = 612
Score = 105 bits (262), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 149/343 (43%), Gaps = 80/343 (23%)
Query: 28 KKRKWDQPAES-LINFPLASFGISLPGVPVAPVVPAPAAAAFFTNPPVASGATVPPVVL- 85
++ KWDQPA + L+ P + G + G +P AAA A+ A +L
Sbjct: 14 RRSKWDQPAPAPLLFLPPTAPGGEVAGSGASPGGATTAAAPSGALDAAAAVAAKINAMLM 73
Query: 86 -QGPLPP------KFNQP-------KVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQ 131
+G L P K P K +D+L++A E+ IND + R LT+ TQ+EI
Sbjct: 74 AKGKLKPSQNAAEKLQAPGKSLTSNKSKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEIS 132
Query: 132 KCTGAVVITRGKYRLPNAPPD---GEKPLYLHISAGAHLKETAERILAVDHAAAMVEEML 188
+ +GA V TRG++ G++PLYLH+ +T E VD A ++E++
Sbjct: 133 RLSGAAVSTRGRFMTTEEKAKVGPGDRPLYLHVQG-----QTRE---LVDRAVNRIKEII 184
Query: 189 KQG--------------------HAGFPTLQTV--------MGNGVQAMSTSVFLGFD-A 219
G H P Q +G+ + +F+G + A
Sbjct: 185 TNGVVKAATGTSPTFNGATVTVYHQPAPIAQLSPAINQKPSFQSGMHYVQDKLFVGLEHA 244
Query: 220 DASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSG 279
+ N+ ++ GP S Y+ HI ETGA V LRG+GSG
Sbjct: 245 VPTFNVKEKVEGPGCS-----------------------YLQHIQIETGAKVFLRGKGSG 281
Query: 280 NSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAE 322
E G E +P+++++S P+ L AK+L ENLL T+ AE
Sbjct: 282 CIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHAE 324
>sp|Q5ZL54|K0907_CHICK UPF0469 protein KIAA0907 homolog OS=Gallus gallus GN=RCJMB04_7l9
PE=2 SV=1
Length = 619
Score = 105 bits (262), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 117/258 (45%), Gaps = 64/258 (24%)
Query: 97 KVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPD---G 153
K +D+L++A E+ IND + R LT+ TQ+EI + +GA V TRG++ G
Sbjct: 107 KSKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEISRLSGAAVSTRGRFMTAEEKAKVGPG 165
Query: 154 EKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQG--------------------HA 193
++PLYLH+ +T E VD A ++E++ G H
Sbjct: 166 DRPLYLHVQG-----QTRE---LVDRAVNRIKEIITNGVVKAATGSSPTFNGATVTVYHQ 217
Query: 194 GFPTLQTV--------MGNGVQAMSTSVFLGFD-ADASLNIAARIRGPNLSLTSPYNWER 244
P Q +G+ + +F+G + A + N+ ++ GP S
Sbjct: 218 PAPITQMSPAVGQKPPFQSGMHYVQDKLFVGLEHAVPTFNVKEKVEGPGCS--------- 268
Query: 245 LFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKS 304
Y+ HI ETGA V LRG+GSG E G E +P+++++S P+
Sbjct: 269 --------------YLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEG 314
Query: 305 LEEAKRLAENLLDTISAE 322
L AK+L ENLL T+ AE
Sbjct: 315 LAAAKKLCENLLQTVHAE 332
>sp|Q7Z7F0|K0907_HUMAN UPF0469 protein KIAA0907 OS=Homo sapiens GN=KIAA0907 PE=1 SV=1
Length = 614
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 117/258 (45%), Gaps = 64/258 (24%)
Query: 97 KVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPD---G 153
K +D+L++A E+ IND + R LT+ TQ+EI + +GA V TRG++ G
Sbjct: 97 KSKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEISRLSGAAVSTRGRFMTTEEKAKVGPG 155
Query: 154 EKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQG--------------------HA 193
++PLYLH+ +T E VD A ++E++ G H
Sbjct: 156 DRPLYLHVQG-----QTRE---LVDRAVNRIKEIITNGVVKAATGTSPTFNGATVTVYHQ 207
Query: 194 GFPTLQTV--------MGNGVQAMSTSVFLGFD-ADASLNIAARIRGPNLSLTSPYNWER 244
P Q +G+ + +F+G + A + N+ ++ GP S
Sbjct: 208 PAPIAQLSPAVSQKPPFQSGMHYVQDKLFVGLEHAVPTFNVKEKVEGPGCS--------- 258
Query: 245 LFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKS 304
Y+ HI ETGA V LRG+GSG E G E +P+++++S P+
Sbjct: 259 --------------YLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEG 304
Query: 305 LEEAKRLAENLLDTISAE 322
L AK+L ENLL T+ AE
Sbjct: 305 LAAAKKLCENLLQTVHAE 322
>sp|Q09911|YAJE_SCHPO Uncharacterized protein C30D11.14c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC30D11.14c PE=4 SV=1
Length = 534
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/324 (22%), Positives = 133/324 (41%), Gaps = 65/324 (20%)
Query: 98 VQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAP--PDGEK 155
++ + + +++ IN+ + RY L + T EI+ +G + ++G+Y PN D +
Sbjct: 160 IEGDGVFMQDVEINNVRN--RYILVRASTLSEIENKSGVQLFSKGRY-YPNKALATDKDP 216
Query: 156 PLYLHISAGAH------LKETAERILA-----VDHAAAMVEEMLKQGHAGFPTLQTVMGN 204
PLYLHI + L+E I +D E ++ ++ P + GN
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIESWINKDMGPLIDERRFRRREDNERNNSNSPRNFSTHGN 276
Query: 205 G--------VQAMSTSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQ 256
G + + V++ ++ I GP Q
Sbjct: 277 GNGENGQPRRKWLEEKVYINLTPSRGFHLRQAIVGP-----------------------Q 313
Query: 257 DQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLL 316
Y+ HI ET V ++G+GS E E +P+HL + S++P +++ AK L E+L+
Sbjct: 314 GAYVKHIQQETRTRVQIKGQGSAFIEPSTNRESDEPIHLCIMSHDPNAIQRAKVLCEDLI 373
Query: 317 DTISAECGASRV--------SSCKVYNAVPPPQQLLTGIQGFGNE--QKLNAGSAVILTS 366
++ + A + + YN PP + + E Q NA A ++T
Sbjct: 374 ASVHQQYKAWKSQPKDRDQNQGNRAYN--PPNRNQAFSARDSRQEKTQPTNASPAPLVTP 431
Query: 367 TVNLSSVPLAPSV------PGVTT 384
++ + S+P P + PGVT+
Sbjct: 432 SLPVPSIPAVPGMEAMAMPPGVTS 455
>sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa subsp.
japonica GN=Os08g0159900 PE=2 SV=1
Length = 1049
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 13/116 (11%)
Query: 53 GVPVAPVVPAPAAAAFFTNPPVASGATVPPVVLQGPLPPKFNQPKVQDELI---IAREIV 109
G V P++P A+ N A LQ + N ++Q + E+
Sbjct: 903 GTSVGPLLPLAIASNTQNNEATAR-------ALQAAFNIQQNLARIQAHAVPEHYEAELE 955
Query: 110 INDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDG--EKPLYLHISA 163
IND + R+K+T + T IQ+ TGA + TRG + P G E+ LYL I
Sbjct: 956 INDFPQNARWKITHKETLGPIQEWTGAAITTRGTF-FPQGKIVGANERKLYLFIEG 1010
>sp|Q569Z5|DDX46_MOUSE Probable ATP-dependent RNA helicase DDX46 OS=Mus musculus GN=Ddx46
PE=1 SV=2
Length = 1032
Score = 40.0 bits (92), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLP-NAPPDGEKPLYLHISAGA 165
E+ IND + R+K+T + + I + + A + RG Y P P +GE+ +YL I +
Sbjct: 936 ELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESAN 995
Query: 166 HLKETAERILAVDHAAAMVEEMLKQ 190
LAV A A + ++K+
Sbjct: 996 E--------LAVQKAKAEITRLIKE 1012
>sp|Q5R6D8|DDX46_PONAB Probable ATP-dependent RNA helicase DDX46 OS=Pongo abelii GN=DDX46
PE=2 SV=1
Length = 1032
Score = 40.0 bits (92), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLP-NAPPDGEKPLYLHISAGA 165
E+ IND + R+K+T + + I + + A + RG Y P P +GE+ +YL I +
Sbjct: 936 ELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESAN 995
Query: 166 HLKETAERILAVDHAAAMVEEMLKQ 190
LAV A A + ++K+
Sbjct: 996 E--------LAVQKAKAEITRLIKE 1012
>sp|Q7L014|DDX46_HUMAN Probable ATP-dependent RNA helicase DDX46 OS=Homo sapiens GN=DDX46
PE=1 SV=2
Length = 1031
Score = 40.0 bits (92), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLP-NAPPDGEKPLYLHISAGA 165
E+ IND + R+K+T + + I + + A + RG Y P P +GE+ +YL I +
Sbjct: 935 ELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESAN 994
Query: 166 HLKETAERILAVDHAAAMVEEMLKQ 190
LAV A A + ++K+
Sbjct: 995 E--------LAVQKAKAEITRLIKE 1011
>sp|Q62780|DDX46_RAT Probable ATP-dependent RNA helicase DDX46 OS=Rattus norvegicus
GN=Ddx46 PE=1 SV=1
Length = 1032
Score = 39.7 bits (91), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLP-NAPPDGEKPLYLHISAGA 165
E+ IND + R+K+T + + I + + A + RG Y P P +GE+ +YL I +
Sbjct: 936 ELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESAN 995
Query: 166 HLKETAERILAVDHAAAMVEEMLKQ 190
LAV A A + ++K+
Sbjct: 996 E--------LAVQKAKAEITRLIKE 1012
>sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana
GN=RH42 PE=1 SV=2
Length = 1166
Score = 39.7 bits (91), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 12/78 (15%)
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKY----RLPNAPPDGEKPLYLHIS 162
E+ IND + R+K+T + T I + TGA + TRG++ R+P GE+ LYL I
Sbjct: 1070 ELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQFYPTGRIPGP---GERKLYLFIE 1126
Query: 163 -----AGAHLKETAERIL 175
+ H K +R+L
Sbjct: 1127 GPSEKSVKHAKAELKRVL 1144
>sp|Q4TVV3|DDX46_DANRE Probable ATP-dependent RNA helicase DDX46 OS=Danio rerio GN=ddx46
PE=2 SV=1
Length = 1018
Score = 39.7 bits (91), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLP-NAPPDGEKPLYLHISAGA 165
E+ IND + R+K+T + + I + + A + RG Y P P +GE+ +YL I +
Sbjct: 922 ELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESAN 981
Query: 166 HLKETAERILAVDHAAAMVEEMLKQ 190
LAV A A + ++K+
Sbjct: 982 E--------LAVQKAKAEITRLIKE 998
>sp|Q9SF41|RH45_ARATH DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana
GN=RH45 PE=2 SV=1
Length = 989
Score = 37.4 bits (85), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGK-YRLPNAPPDGEKPLYLHI---- 161
E+ IND + R+K+T + T I + +GA + TRGK Y P E+ LYL +
Sbjct: 893 ELEINDFPQNARWKVTHKETLGPISEWSGASITTRGKFYEAGRIPGPEERKLYLFVEGPT 952
Query: 162 -----SAGAHLKETAERI 174
+A A LK E I
Sbjct: 953 EISVKTAKAELKRVLEDI 970
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 232,104,912
Number of Sequences: 539616
Number of extensions: 10487652
Number of successful extensions: 58313
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 659
Number of HSP's that attempted gapping in prelim test: 48850
Number of HSP's gapped (non-prelim): 7096
length of query: 594
length of database: 191,569,459
effective HSP length: 123
effective length of query: 471
effective length of database: 125,196,691
effective search space: 58967641461
effective search space used: 58967641461
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)