Query 007659
Match_columns 594
No_of_seqs 201 out of 420
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 07:19:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007659.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007659hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yqr_A KIAA0907 protein; struc 100.0 1E-28 3.5E-33 220.5 9.9 112 202-340 5-117 (119)
2 2bl5_A MGC83862 protein, quaki 99.9 1.2E-23 4.3E-28 192.7 3.4 95 209-326 2-109 (140)
3 1k1g_A SF1-BO isoform; splicin 99.8 8E-22 2.8E-26 178.0 6.3 89 207-318 5-99 (131)
4 3krm_A Insulin-like growth fac 99.1 5.9E-10 2E-14 100.2 12.2 148 117-324 14-162 (163)
5 2jvz_A KH type-splicing, FAR u 99.0 4E-09 1.4E-13 94.3 15.1 157 105-320 3-162 (164)
6 2jzx_A Poly(RC)-binding protei 98.8 2.9E-08 1E-12 89.0 10.6 153 104-317 5-158 (160)
7 1j4w_A FUSE binding protein; s 98.8 3.7E-08 1.3E-12 89.8 11.2 147 117-316 14-174 (174)
8 2anr_A Neuro-oncological ventr 98.7 5.3E-08 1.8E-12 88.9 10.7 158 105-317 7-174 (178)
9 2opv_A KHSRP protein; KH domai 98.4 6.8E-07 2.3E-11 74.0 8.0 72 208-317 13-84 (85)
10 1x4m_A FAR upstream element bi 98.2 1.6E-06 5.3E-11 73.3 6.0 75 205-317 11-85 (94)
11 2e3u_A PH-DIM2P, hypothetical 98.1 2.3E-06 7.7E-11 83.2 5.8 150 106-318 36-191 (219)
12 1x4n_A FAR upstream element bi 98.1 2.3E-06 7.9E-11 72.0 4.9 71 209-319 15-85 (92)
13 1zzk_A Heterogeneous nuclear r 98.1 3.9E-06 1.3E-10 69.0 5.4 72 209-320 7-78 (82)
14 2hh3_A KH-type splicing regula 98.1 3.9E-06 1.4E-10 73.1 5.4 70 210-319 12-81 (106)
15 2hh2_A KH-type splicing regula 98.0 5.4E-06 1.9E-10 71.8 5.0 71 210-317 8-78 (107)
16 1dtj_A RNA-binding neurooncolo 98.0 6.1E-06 2.1E-10 66.3 4.6 63 224-317 12-74 (76)
17 2ctm_A Vigilin; K homology typ 98.0 5.9E-06 2E-10 70.5 4.8 77 209-326 17-93 (95)
18 1j5k_A Heterogeneous nuclear r 97.9 4.6E-06 1.6E-10 69.7 3.7 74 208-321 13-86 (89)
19 2p2r_A Poly(RC)-binding protei 97.9 5.5E-06 1.9E-10 67.0 3.7 68 210-317 6-73 (76)
20 2ctk_A Vigilin; K homology typ 97.9 9.6E-06 3.3E-10 70.2 4.9 66 224-325 26-91 (104)
21 1ec6_A RNA-binding protein NOV 97.9 1.2E-05 4.2E-10 66.6 5.1 75 211-322 5-79 (87)
22 2ctl_A Vigilin; K homology typ 97.9 1.5E-05 5E-10 68.2 5.6 76 209-323 17-92 (97)
23 2dgr_A Ring finger and KH doma 97.8 1.5E-05 5.1E-10 66.8 4.8 66 208-316 9-74 (83)
24 1we8_A Tudor and KH domain con 97.8 1.7E-05 5.8E-10 68.1 4.9 73 209-319 15-87 (104)
25 2cte_A Vigilin; K homology typ 97.8 1.2E-05 4E-10 68.1 3.8 71 209-321 17-87 (94)
26 1wvn_A Poly(RC)-binding protei 97.8 1.1E-05 3.9E-10 66.1 3.3 70 209-318 6-75 (82)
27 1k1g_A SF1-BO isoform; splicin 97.7 4.8E-05 1.6E-09 68.8 7.1 75 108-190 13-99 (131)
28 2axy_A Poly(RC)-binding protei 97.7 2.1E-05 7.3E-10 63.6 3.8 58 224-317 14-71 (73)
29 1vig_A Vigilin; RNA-binding pr 97.7 1.9E-05 6.4E-10 63.7 2.8 56 225-316 15-70 (71)
30 2yqr_A KIAA0907 protein; struc 97.7 8E-05 2.7E-09 66.7 6.9 66 117-190 30-99 (119)
31 1tua_A Hypothetical protein AP 97.6 3.2E-05 1.1E-09 74.1 3.9 141 117-318 15-160 (191)
32 2qnd_A FMR1 protein; KH domain 97.5 0.00021 7.3E-09 64.6 7.8 137 104-319 4-143 (144)
33 1j4w_A FUSE binding protein; s 97.3 0.00023 7.8E-09 64.8 4.9 63 224-320 12-74 (174)
34 2jvz_A KH type-splicing, FAR u 97.1 0.00046 1.6E-08 61.5 5.4 62 225-318 12-73 (164)
35 2ctj_A Vigilin; K homology typ 97.1 0.00032 1.1E-08 60.1 4.1 59 225-319 27-86 (95)
36 2cpq_A FragIle X mental retard 97.0 0.00031 1E-08 60.6 2.8 53 225-315 25-78 (91)
37 2bl5_A MGC83862 protein, quaki 96.8 0.0017 5.7E-08 59.9 6.3 80 108-190 8-101 (140)
38 2jzx_A Poly(RC)-binding protei 96.6 0.0013 4.4E-08 58.8 4.1 59 224-318 14-72 (160)
39 2anr_A Neuro-oncological ventr 96.6 0.0016 5.6E-08 59.2 4.4 72 209-317 6-77 (178)
40 3krm_A Insulin-like growth fac 96.5 0.0026 8.8E-08 57.0 5.1 61 225-318 13-73 (163)
41 3u1k_A Polyribonucleotide nucl 95.9 0.0046 1.6E-07 68.3 4.0 54 225-317 577-630 (630)
42 2ctf_A Vigilin; K homology typ 95.0 0.035 1.2E-06 47.9 5.7 60 225-323 37-97 (102)
43 2opv_A KHSRP protein; KH domai 94.7 0.13 4.3E-06 42.3 8.2 69 105-190 15-85 (85)
44 4aid_A Polyribonucleotide nucl 94.7 0.022 7.6E-07 64.0 4.8 55 225-318 580-634 (726)
45 1zzk_A Heterogeneous nuclear r 94.5 0.15 5.2E-06 41.6 8.1 70 104-191 7-77 (82)
46 3n89_A Defective in GERM LINE 93.7 0.088 3E-06 55.2 6.5 53 257-316 205-259 (376)
47 1dtj_A RNA-binding neurooncolo 93.6 0.13 4.6E-06 40.9 6.0 70 106-190 5-75 (76)
48 2dgr_A Ring finger and KH doma 93.5 0.15 5E-06 42.6 6.4 66 104-190 10-76 (83)
49 2e3u_A PH-DIM2P, hypothetical 93.5 0.063 2.2E-06 52.2 4.7 62 211-316 36-101 (219)
50 1wvn_A Poly(RC)-binding protei 93.4 0.12 4.2E-06 42.0 5.7 69 105-191 7-76 (82)
51 2p2r_A Poly(RC)-binding protei 93.3 0.13 4.4E-06 41.3 5.4 69 105-191 6-75 (76)
52 2hh2_A KH-type splicing regula 93.3 0.15 5.1E-06 44.0 6.2 71 107-192 10-81 (107)
53 1we8_A Tudor and KH domain con 93.2 0.25 8.7E-06 42.1 7.5 77 100-192 11-88 (104)
54 1x4m_A FAR upstream element bi 93.1 0.14 4.8E-06 43.0 5.7 72 104-191 15-87 (94)
55 1x4n_A FAR upstream element bi 92.9 0.16 5.3E-06 42.6 5.6 71 104-192 15-86 (92)
56 2hh3_A KH-type splicing regula 92.8 0.2 6.8E-06 43.5 6.3 69 107-193 14-83 (106)
57 4fxw_B Splicing factor 1; UHM, 92.7 0.096 3.3E-06 47.7 4.3 52 149-200 70-121 (124)
58 1j5k_A Heterogeneous nuclear r 92.7 0.17 5.8E-06 42.0 5.5 70 104-191 14-84 (89)
59 3n89_A Defective in GERM LINE 92.0 0.059 2E-06 56.5 2.4 73 207-315 28-103 (376)
60 2cte_A Vigilin; K homology typ 91.9 0.37 1.3E-05 40.5 6.7 68 104-191 17-85 (94)
61 1ec6_A RNA-binding protein NOV 91.1 0.44 1.5E-05 39.2 6.2 62 117-191 14-76 (87)
62 2ctl_A Vigilin; K homology typ 89.8 1.1 3.6E-05 38.1 7.7 69 104-190 17-87 (97)
63 2qnd_A FMR1 protein; KH domain 89.8 0.13 4.6E-06 46.3 2.2 60 210-312 5-64 (144)
64 2axy_A Poly(RC)-binding protei 89.5 0.72 2.5E-05 37.0 6.1 67 105-191 6-73 (73)
65 1vig_A Vigilin; RNA-binding pr 89.5 0.59 2E-05 37.4 5.6 64 105-188 6-70 (71)
66 2ctk_A Vigilin; K homology typ 88.8 0.58 2E-05 40.3 5.4 67 104-190 17-84 (104)
67 2ctm_A Vigilin; K homology typ 88.6 0.75 2.6E-05 39.0 5.8 68 104-190 17-85 (95)
68 1e3p_A Guanosine pentaphosphat 80.4 0.84 2.9E-05 51.6 3.1 53 225-316 608-660 (757)
69 2ctj_A Vigilin; K homology typ 77.9 3.5 0.00012 35.1 5.6 66 105-190 18-85 (95)
70 3cdi_A Polynucleotide phosphor 77.8 0.45 1.5E-05 53.5 0.0 54 225-317 570-623 (723)
71 3v69_A Protein filia; RNA-bind 75.9 4.8 0.00016 37.5 6.2 65 224-323 65-129 (140)
72 1tua_A Hypothetical protein AP 70.4 3.7 0.00013 39.3 4.3 67 100-190 85-160 (191)
73 2ctf_A Vigilin; K homology typ 69.8 9.5 0.00033 32.7 6.3 64 104-190 27-92 (102)
74 2cpq_A FragIle X mental retard 44.7 9.6 0.00033 32.7 2.0 62 104-187 15-78 (91)
75 1wjw_A Phosphoacetylglucosamin 32.7 1.5E+02 0.0052 25.5 7.7 49 259-322 46-96 (112)
76 4did_B Inositol phosphate phos 29.7 35 0.0012 32.0 3.3 33 301-333 88-121 (152)
77 3u1k_A Polyribonucleotide nucl 26.7 40 0.0014 37.5 3.7 60 107-189 570-630 (630)
78 3gpk_A PPIC-type peptidyl-prol 20.5 97 0.0033 26.7 4.2 29 293-322 11-39 (112)
79 3iot_A Maltose-binding protein 20.5 21 0.00073 35.8 0.0 17 125-141 22-38 (449)
80 3i38_A Putative chaperone DNAJ 20.5 89 0.003 26.8 3.9 46 266-317 49-95 (109)
No 1
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.95 E-value=1e-28 Score=220.48 Aligned_cols=112 Identities=36% Similarity=0.646 Sum_probs=105.4
Q ss_pred cCCCCCcceeEEEecCC-CCCCCceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCC
Q 007659 202 MGNGVQAMSTSVFLGFD-ADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGN 280 (594)
Q Consensus 202 ~~~G~~~~s~kV~Igid-~~P~fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~ 280 (594)
...|++|+++||||+++ .+|+|||+|+||||+ |.+||+|++||||||.||||||++
T Consensus 5 ~~~~~~~~~~ki~ip~~~~~p~fn~ig~IIGpg-----------------------G~tiK~I~~eTG~kI~I~G~gS~~ 61 (119)
T 2yqr_A 5 SSGGMHYVQDKLFVGLEHAVPTFNVKEKVEGPG-----------------------CSYLQHIQIETGAKVFLRGKGSGC 61 (119)
T ss_dssp CCSCCSCEEEEEECCCTTSCTTTCHHHHHSCGG-----------------------GHHHHHHHHHHCCEEEEESBTTTC
T ss_pred CCCCeeEEEEEEEcCCccCCCCCCeeeeEECCC-----------------------ChHHHHHHHHHCCEEEEecCCccc
Confidence 45678999999999999 699999999999999 999999999999999999999999
Q ss_pred CCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCc
Q 007659 281 SEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPP 340 (594)
Q Consensus 281 ~E~~~gqEs~EPLHl~IS~~~pe~l~~Ak~L~EnLL~tV~eEy~~~r~s~~k~y~~~ppp 340 (594)
+|+.+++|++|||||+|++.+++.+++|++||++||.+++++|++| |+-++.+.|-
T Consensus 62 ~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~~Ie~Ll~~v~~~~~~~----~~q~~~~~p~ 117 (119)
T 2yqr_A 62 IEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHAEYSRF----VNQINTAVPL 117 (119)
T ss_dssp CCTTTSSCCSSBCEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHSCCCCC
T ss_pred cccccccccCCCcEEEEEeCCHHHHHHHHHHHHHHhhchHHHHHHH----HHhhCCCCCC
Confidence 9999999999999999999999999999999999999999999999 6666666554
No 2
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=99.87 E-value=1.2e-23 Score=192.69 Aligned_cols=95 Identities=21% Similarity=0.418 Sum_probs=84.6
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCC----CC
Q 007659 209 MSTSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSE----GL 284 (594)
Q Consensus 209 ~s~kV~Igid~~P~fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E----~~ 284 (594)
+++||||+++.+|+|||+|+||||+ |+++|+||+||||||+||||||++.. ..
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPr-----------------------G~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~ 58 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPR-----------------------GLTAKQLEAETGCKIMVRGKGSMRDKKKEEQN 58 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTT-----------------------HHHHHHHHHHHSEEEEEESTTSSCCHHHHHTS
T ss_pred ceeEEEcCcccCCCCCeeeEEECCC-----------------------cchHHHHHHHHCCeEEEecCCCcccccccccc
Confidence 5799999999999999999999999 99999999999999999999999741 22
Q ss_pred CC----CCCCCCcEEEEEeCCHH-----HHHHHHHHHHHHHHHHHHHhccc
Q 007659 285 QG----EEVHQPLHLFLSSNNPK-----SLEEAKRLAENLLDTISAECGAS 326 (594)
Q Consensus 285 ~g----qEs~EPLHl~IS~~~pe-----~l~~Ak~L~EnLL~tV~eEy~~~ 326 (594)
.| ++.+|||||+|++.+++ .+++|+++|++||.++.+.++.+
T Consensus 59 ~g~~~~~~~~epLHV~Isa~~~~~~~~~~l~~A~~~I~~lL~p~~e~~de~ 109 (140)
T 2bl5_A 59 RGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLVPAAEGEDSL 109 (140)
T ss_dssp TTSHHHHTTTSCCEEEEEECSCCHHHHHHHHHHHHHHHHHSSCCSSSSSHH
T ss_pred cCCCCccccCCCcEEEEEecCchhhHHHHHHHHHHHHHHHCCCCCcchhHH
Confidence 33 26899999999999986 89999999999999988766655
No 3
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.84 E-value=8e-22 Score=178.04 Aligned_cols=89 Identities=22% Similarity=0.387 Sum_probs=81.2
Q ss_pred CcceeEEEecCCCCCCCceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCC---
Q 007659 207 QAMSTSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEG--- 283 (594)
Q Consensus 207 ~~~s~kV~Igid~~P~fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~--- 283 (594)
...++||||+++.+|+|||+|+||||+ |+++|+|++||||||.||||||++.+.
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~-----------------------G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~ 61 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPR-----------------------GNTLKNIEKECNAKIMIRGKGSVKEGKVGR 61 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSS-----------------------SHHHHHHHHHSCCEEEEEESTTSSSSSSSS
T ss_pred ceEEEEEEECCccccCcceeeeEECCC-----------------------cHHHHHHHHHHCCeEEecCCcccccccccc
Confidence 467899999999999999999999999 999999999999999999999998532
Q ss_pred ---CCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHH
Q 007659 284 ---LQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDT 318 (594)
Q Consensus 284 ---~~gqEs~EPLHl~IS~~~pe~l~~Ak~L~EnLL~t 318 (594)
...++++|||||+|++.+++.+++|+++|++||..
T Consensus 62 ~~~~~~~~~~e~lhV~I~a~~~e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 62 KDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQ 99 (131)
T ss_dssp CCCCCSCCSSCCEEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred cccccccccCCCeEEEEEECCHHHHHHHHHHHHHHHhc
Confidence 12346889999999999999999999999999976
No 4
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.10 E-value=5.9e-10 Score=100.21 Aligned_cols=148 Identities=15% Similarity=0.116 Sum_probs=105.0
Q ss_pred ccccccc-hhHHHHHHhhhCCeEeecccccCCCCCCCCCCCeEEeeecccchhhHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 007659 117 VRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGF 195 (594)
Q Consensus 117 vRy~LTK-g~Tq~eIqe~TGAsVtTRGrYyPPgk~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAIalIeEIIKe~P~~~ 195 (594)
++.++-| |+++++|++.|||.|.+--.-+| +..--.+.|.|.. ..+.+|+.+|.+++.+...+.
T Consensus 14 ~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~------~~~~r~v~I~G~~---------e~v~~A~~~I~~~~~e~~~~~ 78 (163)
T 3krm_A 14 VGAIIGKKGQHIKQLSRFASASIKIAPPETP------DSKVRMVIITGPP---------EAQFKAQGRIYGKLKEENFFG 78 (163)
T ss_dssp HHHHHCGGGHHHHHHHHHHTCEEEECCCSST------TCSEEEEEEEECH---------HHHHHHHHHHHHHHHHTTSSC
T ss_pred cceeECCCcHHHHHHHHHHCCeEEEcCCCCC------CCCceEEEEEcCH---------HHHHHHHHHHHHHHhcccccc
Confidence 6777755 99999999999999976432111 2222345778854 368889999999988753222
Q ss_pred CCcccccCCCCCcceeEEEecCCCCCCCceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEee
Q 007659 196 PTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRG 275 (594)
Q Consensus 196 pt~~~~~~~G~~~~s~kV~Igid~~P~fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRG 275 (594)
+. .......++.|+- +.+|+|||++ |.++++|+++|||+|.|-.
T Consensus 79 ~~-------~~~~~~~~i~vp~------~~~g~iIGkg-----------------------G~~I~~i~~~tga~I~i~~ 122 (163)
T 3krm_A 79 PK-------EEVKLETHIRVPA------SAAGRVIGKG-----------------------GKTVNELQNLTAAEVVVPR 122 (163)
T ss_dssp SS-------CCCCEEEEEEEET------TTHHHHHCGG-----------------------GHHHHHHHHHHCCEEECCT
T ss_pred cc-------cCCceEEEEEcCh------hheeeEEcCC-----------------------ChHHHHHHHHhCCeEEECC
Confidence 11 1112334555552 5899999999 9999999999999999975
Q ss_pred cCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhc
Q 007659 276 RGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECG 324 (594)
Q Consensus 276 KGSG~~E~~~gqEs~EPLHl~IS~~~pe~l~~Ak~L~EnLL~tV~eEy~ 324 (594)
.|.. .+.+.-.|.|+| +++.+++|++++++||+.+++..+
T Consensus 123 ~~~~--------~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~~~~~~~~ 162 (163)
T 3krm_A 123 DQTP--------DENDQVIVKIIG-HFYASQMAQRKIRDILAQVKQQHQ 162 (163)
T ss_dssp TCCC--------CTTSEEEEEEEE-CHHHHHHHHHHHHHHHHHHTC---
T ss_pred CCCC--------CCCCceEEEEEe-CHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4431 123334788999 899999999999999998887653
No 5
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.05 E-value=4e-09 Score=94.30 Aligned_cols=157 Identities=19% Similarity=0.250 Sum_probs=106.6
Q ss_pred EeeEEeCCCCccccccccc-hhHHHHHHhhhCCeEeecccccCCCC-CCCCCCCeEEeeecccchhhHHHHHHHHHHHHH
Q 007659 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNA-PPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (594)
Q Consensus 105 ~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGAsVtTRGrYyPPgk-~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAIa 182 (594)
..+|.|..-- ++.++-| |+++++|+++|||.|.+-- .+. ....++ .+.|.|.. ..|++|+.
T Consensus 3 ~~~~~Vp~~~--~g~iIGk~G~~Ik~i~~~tg~~I~i~~----~~~~~~~~~r--~v~I~G~~---------~~v~~A~~ 65 (164)
T 2jvz_A 3 VQEIMIPAGK--AGLVIGKGGETIKQLQERAGVKMILIQ----DGSQNTNVDK--PLRIIGDP---------YKVQQACE 65 (164)
T ss_dssp EEEEEECTTC--HHHHTCTTTHHHHHHHHTSCSEEEECC----CTTSSSSSCE--EEEEEECH---------HHHHHHHH
T ss_pred EEEEEechhh--eeEEECCChHHHHHHHHHhCCeEEEec----CCCCCCCCce--EEEEEcCH---------HHHHHHHH
Confidence 3456665543 6777755 9999999999999986521 111 112234 45678853 46899999
Q ss_pred HHHHHHHcCCCCCCCcccccCCCCC-cceeEEEecCCCCCCCceeeeEeCCCCCCCCccccchhhhhhcccccccchhHH
Q 007659 183 MVEEMLKQGHAGFPTLQTVMGNGVQ-AMSTSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYIN 261 (594)
Q Consensus 183 lIeEIIKe~P~~~pt~~~~~~~G~~-~~s~kV~Igid~~P~fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk 261 (594)
+|.+++.+........ ...++.. ..+.+|.|+- +++|+|||++ |.+++
T Consensus 66 ~I~~ii~e~~~~~~~~--~~~~~~~~~~~~~i~vp~------~~~g~iIGk~-----------------------G~~I~ 114 (164)
T 2jvz_A 66 MVMDILRERDQGGFGD--RNEYGSRIGGGIDVPVPR------HSVGVVIGRS-----------------------GEMIK 114 (164)
T ss_dssp HHHHHTTCSSSCCCSS--CSSCTTSCSSSBCCEEET------TTHHHHHCSS-----------------------SHHHH
T ss_pred HHHHHHHhccCCCCCC--ccccCCCCCceEEEEECh------hhccccCCCC-----------------------cHhHH
Confidence 9999988754211000 0123321 1234444442 3799999999 99999
Q ss_pred HHHhhcCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 007659 262 HIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTIS 320 (594)
Q Consensus 262 ~Iq~ETGaKV~LRGKGSG~~E~~~gqEs~EPLHl~IS~~~pe~l~~Ak~L~EnLL~tV~ 320 (594)
+|+++|||+|.|-..+. ....-.+.|++. ++.++.|++++++||+.+.
T Consensus 115 ~i~~~tg~~I~i~~~~~----------~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~~ 162 (164)
T 2jvz_A 115 KIQNDAGVRIQFKQDDG----------TGPEKIAHIMGP-PDRCEHAARIINDLLQSLR 162 (164)
T ss_dssp HHHHHTCCEEEECCCCT----------TSSEEEEEEESC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCeEEEeCCCC----------CCCcEEEEEEcC-HHHHHHHHHHHHHHHhhhh
Confidence 99999999999974321 112357888886 9999999999999998754
No 6
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.78 E-value=2.9e-08 Score=88.95 Aligned_cols=153 Identities=16% Similarity=0.181 Sum_probs=103.7
Q ss_pred EEeeEEeCCCCccccccccc-hhHHHHHHhhhCCeEeecccccCCCCCCCCCCCeEEeeecccchhhHHHHHHHHHHHHH
Q 007659 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (594)
Q Consensus 104 f~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGAsVtTRGrYyPPgk~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAIa 182 (594)
+..++.|..- .++.++-| |.++++|+++|||.|.+... + ..++ .+.|.|.. ..|++|+.
T Consensus 5 ~~~~~~vp~~--~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~----~---~~~r--~v~I~G~~---------~~v~~A~~ 64 (160)
T 2jzx_A 5 LTIRLLMHGK--EVGSIIGKKGESVKKMREESGARINISEG----N---CPER--IITLAGPT---------NAIFKAFA 64 (160)
T ss_dssp EEEEEEEEHH--HHHHHHCGGGHHHHHHHHHHCSEEEEECC----T---TTEE--EEEEEEEH---------HHHHHHHH
T ss_pred EEEEEEEchh--heeeeECCCcHHHHHHHHHHCCEEEEcCC----C---CCce--EEEEEeCH---------HHHHHHHH
Confidence 3445555542 25677755 89999999999999976432 1 1233 55678864 36889999
Q ss_pred HHHHHHHcCCCCCCCcccccCCCCCcceeEEEecCCCCCCCceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHH
Q 007659 183 MVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINH 262 (594)
Q Consensus 183 lIeEIIKe~P~~~pt~~~~~~~G~~~~s~kV~Igid~~P~fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~ 262 (594)
+|.+++.+......+.+. .........++.|+- +++|+|||++ |.++++
T Consensus 65 ~I~~~i~e~~~~~~~~~~--~~~~~~~~~~i~vp~------~~~g~iIGkg-----------------------G~~Ik~ 113 (160)
T 2jzx_A 65 MIIDKLEEDISSSMTNST--AASRPPVTLRLVVPA------SQCGSLIGKG-----------------------GCKIKE 113 (160)
T ss_dssp HHHHHHHHHHTSCCCSSS--CCCCCSEEEEEEEEH------HHHHHHHCGG-----------------------GHHHHH
T ss_pred HHHHHHHhhccccCCCCc--cCCCCCEEEEEEECh------hheeeEECCC-----------------------CHHHHH
Confidence 999888764211100000 011113455666653 5899999999 999999
Q ss_pred HHhhcCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 007659 263 IMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLD 317 (594)
Q Consensus 263 Iq~ETGaKV~LRGKGSG~~E~~~gqEs~EPLHl~IS~~~pe~l~~Ak~L~EnLL~ 317 (594)
|+++|||+|.|.+.. .. ....=.+.|+| +++.+++|+++++++|.
T Consensus 114 i~~~tga~I~i~~~~------~~---~~~~~~v~I~G-~~~~v~~A~~~I~~~i~ 158 (160)
T 2jzx_A 114 IRESTGAQVQVAGDM------LP---NSTERAITIAG-IPQSIIECVKQICVVML 158 (160)
T ss_dssp HHHHHSSEECCCCCC------ST---TCCEEEEEEEE-CHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCeEEECCCC------CC---CCCceEEEEEc-CHHHHHHHHHHHHHHHh
Confidence 999999999997521 11 11235688888 89999999999999875
No 7
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.77 E-value=3.7e-08 Score=89.80 Aligned_cols=147 Identities=17% Similarity=0.223 Sum_probs=95.6
Q ss_pred ccccccc-hhHHHHHHhhhCCeEeecccccCCCCCCCCCCCeEEeeecccchhhHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 007659 117 VRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGF 195 (594)
Q Consensus 117 vRy~LTK-g~Tq~eIqe~TGAsVtTRGrYyPPgk~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAIalIeEIIKe~P~~~ 195 (594)
++.++-| |.++++|+++|||.|.+... .....++ .+.|.|.. ..|++|+.+|.+++.+.....
T Consensus 14 vg~iIGkgG~~Ik~i~~~tg~~I~i~~~-----~~~~~~r--~v~I~G~~---------~~v~~A~~~I~~~~~~~~~~~ 77 (174)
T 1j4w_A 14 VGIVIGRNGEMIKKIQNDAGVRIQFKPD-----DGTTPER--IAQITGPP---------DRAQHAAEIITDLLRSVQAGN 77 (174)
T ss_dssp HHHHHCGGGHHHHHHHHHHCCEEEEECC-----TTSCSEE--EEEEEECH---------HHHHHHHHHHHHHHHHHC---
T ss_pred eeeeecCCchHHHHHHHHhCCEEEEecC-----CCCCCcc--EEEEEeCH---------HHHHHHHHHHHHHHHhcccCC
Confidence 5666644 99999999999999987431 1112233 44778874 368999999999987643111
Q ss_pred C-----Cccc----ccCC--CC--CcceeEEEecCCCCCCCceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHH
Q 007659 196 P-----TLQT----VMGN--GV--QAMSTSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINH 262 (594)
Q Consensus 196 p-----t~~~----~~~~--G~--~~~s~kV~Igid~~P~fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~ 262 (594)
. .... ...+ +. .....++.|+- +.+|+|||++ |.++++
T Consensus 78 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~------~~~g~iIGkg-----------------------G~~Ik~ 128 (174)
T 1j4w_A 78 PGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPT------GKTGLIIGKG-----------------------GETIKS 128 (174)
T ss_dssp --------------------------CEEEEEEET------TTHHHHHCGG-----------------------GHHHHH
T ss_pred CCCCCCCCCCCCCCCCccccCCCCCcEEEEEEECh------HHcCeeECCC-----------------------chHHHH
Confidence 0 0000 0000 00 11244555542 4789999999 999999
Q ss_pred HHhhcCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 007659 263 IMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLL 316 (594)
Q Consensus 263 Iq~ETGaKV~LRGKGSG~~E~~~gqEs~EPLHl~IS~~~pe~l~~Ak~L~EnLL 316 (594)
|+++|||+|.|-..... ..++. .=.|.|++ +++.+++|++|++++|
T Consensus 129 I~~~tga~I~i~~~~~~------~~~~~-~~~v~I~G-~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 129 ISQQSGARIELQRNPPP------NADPN-MKLFTIRG-TPQQIDYARQLIEEKI 174 (174)
T ss_dssp HHHHHCCEEEEECCCTT------TSCTT-EEEEEEEC-CHHHHHHHHHHHHHHC
T ss_pred HHHHHCCEEEECCCCCC------CCCCC-ceEEEEEC-CHHHHHHHHHHHHHhC
Confidence 99999999999854211 11111 23577888 8999999999999875
No 8
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.73 E-value=5.3e-08 Score=88.85 Aligned_cols=158 Identities=18% Similarity=0.182 Sum_probs=101.9
Q ss_pred EeeEEeCCCCccccccccc-hhHHHHHHhhhCCeEeec--ccccCCCCCCCCCCCeEEeeecccchhhHHHHHHHHHHHH
Q 007659 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITR--GKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAA 181 (594)
Q Consensus 105 ~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGAsVtTR--GrYyPPgk~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAI 181 (594)
..+|.|..- .++.++-| |+++++|+++|||.|.+. +.++|. ..++ .+.|.|.. ..+++|+
T Consensus 7 ~~~i~vp~~--~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~----~~er--~v~I~G~~---------~~v~~A~ 69 (178)
T 2anr_A 7 FLKVLIPSY--AAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPG----TTER--VCLIQGTI---------EALNAVH 69 (178)
T ss_dssp EEEEEEEHH--HHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTT----SSEE--EEEEEECH---------HHHHHHH
T ss_pred EEEEEEChh--HeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCC----CCCc--eEEEEeCH---------HHHHHHH
Confidence 445555542 36777755 899999999999998763 223321 1234 35678864 3689999
Q ss_pred HHHHHHHHcCCCCCCCccc-----c--cCCCCCcceeEEEecCCCCCCCceeeeEeCCCCCCCCccccchhhhhhccccc
Q 007659 182 AMVEEMLKQGHAGFPTLQT-----V--MGNGVQAMSTSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLY 254 (594)
Q Consensus 182 alIeEIIKe~P~~~pt~~~-----~--~~~G~~~~s~kV~Igid~~P~fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~ 254 (594)
.+|.+++.+.+........ + ..+.......++.|+- +.+|+|||++
T Consensus 70 ~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~------~~vg~iIGkg--------------------- 122 (178)
T 2anr_A 70 GFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPN------STAGLIIGKG--------------------- 122 (178)
T ss_dssp HHHHHHHTCCCCC-----------------CGGGGEEEEEEEH------HHHHHHHCGG---------------------
T ss_pred HHHHHHHhccCCccccCCcccccCCccCCCCCCceEEEEEEch------hheeeeECCC---------------------
Confidence 9999999876432110000 0 0000012345555553 4789999999
Q ss_pred ccchhHHHHHhhcCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 007659 255 MQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLD 317 (594)
Q Consensus 255 ~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gqEs~EPLHl~IS~~~pe~l~~Ak~L~EnLL~ 317 (594)
|.++++|+++|||+|.|-....+ .. ...=.|.|+|. ++.+++|+++++++|.
T Consensus 123 --G~~Ik~i~~~tga~I~i~~~~~~-------~~-~~~~~v~I~G~-~~~v~~A~~~I~~~i~ 174 (178)
T 2anr_A 123 --GATVKAIMEQSGAWVQLSQKPDG-------IN-LQNRVVTVSGE-PEQNRKAVELIIQKIQ 174 (178)
T ss_dssp --GHHHHHHHHHSSCEEEECCCC------------CCEEEEEEESS-HHHHHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHCCEEEEeCCCCC-------CC-CCceEEEEEcC-HHHHHHHHHHHHHHHH
Confidence 99999999999999999743211 01 11236777776 5899999999999875
No 9
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=98.41 E-value=6.8e-07 Score=74.02 Aligned_cols=72 Identities=15% Similarity=0.276 Sum_probs=57.8
Q ss_pred cceeEEEecCCCCCCCceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCC
Q 007659 208 AMSTSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGE 287 (594)
Q Consensus 208 ~~s~kV~Igid~~P~fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gq 287 (594)
.....|.|+. +.+|+|||++ |.++|.|+++|||+|.|...|+.
T Consensus 13 ~~~~~i~Ip~------~~ig~IIGkg-----------------------G~~Ik~I~~~tga~I~i~~~~~~-------- 55 (85)
T 2opv_A 13 GTVQEIMIPA------GKAGLVIGKG-----------------------GETIKQLQERAGVKMILIQDGSQ-------- 55 (85)
T ss_dssp SEEEEEEECT------TTHHHHHTTT-----------------------THHHHHHHHHHTCEEEECSSSCS--------
T ss_pred CEEEEEEeCh------hheeeeECCC-----------------------CHHHHHHHHHHCCEEEEcCCCCC--------
Confidence 3456666663 4789999999 99999999999999999875542
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 007659 288 EVHQPLHLFLSSNNPKSLEEAKRLAENLLD 317 (594)
Q Consensus 288 Es~EPLHl~IS~~~pe~l~~Ak~L~EnLL~ 317 (594)
.....-+|.|++ +++.+++|++++++|+.
T Consensus 56 ~~~~er~v~I~G-~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 56 NTNVDKPLRIIG-DPYKVQQACEMVMDILR 84 (85)
T ss_dssp STTSCEEEEEEE-CHHHHHHHHHHHHHHHT
T ss_pred CCCCceEEEEEe-CHHHHHHHHHHHHHHhc
Confidence 112345799999 99999999999999974
No 10
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.21 E-value=1.6e-06 Score=73.33 Aligned_cols=75 Identities=16% Similarity=0.301 Sum_probs=59.1
Q ss_pred CCCcceeEEEecCCCCCCCceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCC
Q 007659 205 GVQAMSTSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGL 284 (594)
Q Consensus 205 G~~~~s~kV~Igid~~P~fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~ 284 (594)
++.....+|.|+. +.+++|||++ |.+||+|+++|||+|.|...|..+
T Consensus 11 ~p~~~~~~i~Ip~------~~vG~IIGkg-----------------------G~~Ik~I~~~tga~I~I~~~~~~~---- 57 (94)
T 1x4m_A 11 GPGNAVQEIMIPA------SKAGLVIGKG-----------------------GETIKQLQERAGVKMVMIQDGPQN---- 57 (94)
T ss_dssp CCCCEEEEEEECH------HHHHHHSCSS-----------------------SSHHHHHHHHHTSEEEECCSCCCS----
T ss_pred CCCcEEEEEEECh------hhcceEECCC-----------------------CHHHHHHHHHHCCeEEecCCCCCC----
Confidence 3344566676664 3889999999 999999999999999998554321
Q ss_pred CCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 007659 285 QGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLD 317 (594)
Q Consensus 285 ~gqEs~EPLHl~IS~~~pe~l~~Ak~L~EnLL~ 317 (594)
. ...-.|.|++ +++.+++|++++++||.
T Consensus 58 ---~-~~~r~v~I~G-~~~~v~~A~~~I~~~i~ 85 (94)
T 1x4m_A 58 ---T-GADKPLRITG-DPYKVQQAKEMVLELIR 85 (94)
T ss_dssp ---S-CSCEEEEEEE-CTTTHHHHHHHHHHHHC
T ss_pred ---C-CCceEEEEEe-CHHHHHHHHHHHHHHHh
Confidence 1 1236788999 99999999999999985
No 11
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.12 E-value=2.3e-06 Score=83.18 Aligned_cols=150 Identities=20% Similarity=0.183 Sum_probs=96.5
Q ss_pred eeEEeCCCCccccccccc-hhHHHHHHhhhCCeEeecccccCCCCCCCCCCCeEEeeecccchhhHHHHHHHHHHHHHHH
Q 007659 106 REIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMV 184 (594)
Q Consensus 106 aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGAsVtTRGrYyPPgk~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAIalI 184 (594)
..|.|..-. .++++-+ |.++..|+++||+.|..-- .+... .|.+.+.+.+. .++++|+.+|
T Consensus 36 ~~i~IP~~k--ig~lIG~gGk~Ik~I~e~tgvkI~I~~----------~~g~V--~I~~~~~t~d~----~~i~kA~~~I 97 (219)
T 2e3u_A 36 EYVKIPKDR--IAVLIGKKGQTKKEIEKRTKTKITIDS----------ETGEV--WITSTKETEDP----LAVWKARDIV 97 (219)
T ss_dssp EEEECCHHH--HHHHHCGGGHHHHHHHHHHTEEEEECT----------TTCEE--EEEECTTCCSH----HHHHHHHHHH
T ss_pred EEEEeCHHH--hhhhhcccHHHHHHHHHHHCcEEEEEc----------CCCEE--EEecCCCCCCH----HHHHHHHHHH
Confidence 367777654 7888866 8999999999999987521 13344 44554422121 4789999999
Q ss_pred HHHHHcCCCCCCCcccccCCCCCcceeEEEecC---CCCCCC--ceeeeEeCCCCCCCCccccchhhhhhcccccccchh
Q 007659 185 EEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGF---DADASL--NIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQY 259 (594)
Q Consensus 185 eEIIKe~P~~~pt~~~~~~~G~~~~s~kV~Igi---d~~P~f--N~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~ 259 (594)
+.+...-.......-..++ ...+.+.|.- ...+++ ..+|||||++ |.+
T Consensus 98 ~~i~rg~~~e~g~~ll~dd----~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~-----------------------G~t 150 (219)
T 2e3u_A 98 LAIGRGFSPERAFRLLNEG----EYLEIINLTDIIIGNEKNALPRVRGRIIGRK-----------------------GRT 150 (219)
T ss_dssp HHHHTTCCHHHHGGGGSTT----CEEEEEEGGGCC------CHHHHHHHHHCGG-----------------------GHH
T ss_pred HHHhccCCccccceeccCC----ccceeEEcccccccCCchhhhhhhheeECCC-----------------------chH
Confidence 9987321000000000011 1123333331 112222 2689999999 999
Q ss_pred HHHHHhhcCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHH
Q 007659 260 INHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDT 318 (594)
Q Consensus 260 lk~Iq~ETGaKV~LRGKGSG~~E~~~gqEs~EPLHl~IS~~~pe~l~~Ak~L~EnLL~t 318 (594)
++.||+.|||+|.|-| . .+.|.| ..+.++.|++++++||+.
T Consensus 151 ik~ie~~Tg~~I~v~~---------------~--~v~i~G-~~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 151 RQIIEEMSGASVSVYG---------------K--TVAIIG-NPIQIEIAKTAIEKLARG 191 (219)
T ss_dssp HHHHHHHHCCEEEEET---------------T--EEEEEE-CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCceEEECC---------------e--EEEEEe-CHHHHHHHHHHHHHHHcC
Confidence 9999999999999963 2 367777 678889999999999964
No 12
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=98.11 E-value=2.3e-06 Score=72.02 Aligned_cols=71 Identities=21% Similarity=0.338 Sum_probs=56.7
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCCC
Q 007659 209 MSTSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEE 288 (594)
Q Consensus 209 ~s~kV~Igid~~P~fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gqE 288 (594)
...+|.|+. +++|+|||++ |.+|++|+++|||+|.|.....+
T Consensus 15 ~~~~i~Ip~------~~vG~IIGkg-----------------------G~~Ik~I~~~tga~I~I~~~~~g--------- 56 (92)
T 1x4n_A 15 MTEEYKVPD------GMVGFIIGRG-----------------------GEQISRIQQESGCKIQIAPDSGG--------- 56 (92)
T ss_dssp EEEEEEEEH------HHHHHHHCSS-----------------------SHHHHHHHHHSCCEEEECSCCTT---------
T ss_pred EEEEEEECh------HHcceeECCC-----------------------chHHHHHHHHhCCEEEEcCCCCC---------
Confidence 456666664 3889999999 99999999999999999854211
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 007659 289 VHQPLHLFLSSNNPKSLEEAKRLAENLLDTI 319 (594)
Q Consensus 289 s~EPLHl~IS~~~pe~l~~Ak~L~EnLL~tV 319 (594)
...-.|.|++. ++.+++|++|++++|+..
T Consensus 57 -~~~r~v~I~G~-~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 57 -LPERSCMLTGT-PESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp -CSEEEEEEEEC-HHHHHHHHHHHHHHHHHT
T ss_pred -CCccEEEEEeC-HHHHHHHHHHHHHHHHhc
Confidence 12257888886 999999999999998764
No 13
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=98.07 E-value=3.9e-06 Score=69.04 Aligned_cols=72 Identities=22% Similarity=0.346 Sum_probs=56.5
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCCC
Q 007659 209 MSTSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEE 288 (594)
Q Consensus 209 ~s~kV~Igid~~P~fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gqE 288 (594)
.+.+|.|+. +.+|+|||++ |.++++|+++|||+|.|... .. .
T Consensus 7 ~~~~i~Vp~------~~vg~iIGkg-----------------------G~~Ik~I~~~tga~I~i~~~-------~~--~ 48 (82)
T 1zzk_A 7 ITTQVTIPK------DLAGSIIGKG-----------------------GQRIKQIRHESGASIKIDEP-------LE--G 48 (82)
T ss_dssp EEEEEEEET------TTGGGGTCGG-----------------------GHHHHHHHHHHCCEEEECCT-------TS--C
T ss_pred EEEEEEECh------HhcCeeECCC-----------------------chHHHHHHHHHCCEEEEcCC-------CC--C
Confidence 455666664 3789999999 99999999999999999732 00 1
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 007659 289 VHQPLHLFLSSNNPKSLEEAKRLAENLLDTIS 320 (594)
Q Consensus 289 s~EPLHl~IS~~~pe~l~~Ak~L~EnLL~tV~ 320 (594)
...-.+.|++ +++.+++|++++++++....
T Consensus 49 -~~~~~v~I~G-~~~~v~~A~~~I~~~i~~~~ 78 (82)
T 1zzk_A 49 -SEDRIITITG-TQDQIQNAQYLLQNSVKQYS 78 (82)
T ss_dssp -SSEEEEEEEE-CHHHHHHHHHHHHHHHHHHH
T ss_pred -CCceEEEEEe-CHHHHHHHHHHHHHHHHhcc
Confidence 1225788999 59999999999999987543
No 14
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.05 E-value=3.9e-06 Score=73.06 Aligned_cols=70 Identities=17% Similarity=0.281 Sum_probs=54.6
Q ss_pred eeEEEecCCCCCCCceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCCCC
Q 007659 210 STSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEV 289 (594)
Q Consensus 210 s~kV~Igid~~P~fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gqEs 289 (594)
..+|.|+. +.+++|||++ |.+||+|+++|||+|.|.-.+ ..
T Consensus 12 ~~~i~Ip~------~~iG~IIGkg-----------------------G~~Ik~I~~~TGakI~I~~~~----------~~ 52 (106)
T 2hh3_A 12 GIDVPVPR------HSVGVVIGRS-----------------------GEMIKKIQNDAGVRIQFKQDD----------GT 52 (106)
T ss_dssp CEEEEEET------TTHHHHHTTT-----------------------THHHHHHHHHHTCEEEECSSC----------SS
T ss_pred EEEEEECH------HHcCccCCCC-----------------------cHHHHHHHHHHCcEEEEecCC----------CC
Confidence 45666653 3689999999 999999999999999997321 11
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 007659 290 HQPLHLFLSSNNPKSLEEAKRLAENLLDTI 319 (594)
Q Consensus 290 ~EPLHl~IS~~~pe~l~~Ak~L~EnLL~tV 319 (594)
...-.|.|++. ++.+++|++|+++||...
T Consensus 53 ~~er~V~I~G~-~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 53 GPEKIAHIMGP-PDRCEHAARIINDLLQSL 81 (106)
T ss_dssp SSEEEEEEESS-HHHHHHHHHHHHHHHHHH
T ss_pred CceeEEEEEeC-HHHHHHHHHHHHHHHhcc
Confidence 12357888876 999999999999998753
No 15
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=97.99 E-value=5.4e-06 Score=71.76 Aligned_cols=71 Identities=17% Similarity=0.234 Sum_probs=54.4
Q ss_pred eeEEEecCCCCCCCceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCCCC
Q 007659 210 STSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEV 289 (594)
Q Consensus 210 s~kV~Igid~~P~fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gqEs 289 (594)
..+|.|+. +.+++|||++ |.+||+|+++|||+|.|.....-. ..
T Consensus 8 ~~~i~IP~------~~vG~IIGkg-----------------------G~~Ik~I~~~TGa~I~I~~~~~~~-------~~ 51 (107)
T 2hh2_A 8 EMTFSIPT------HKCGLVIGRG-----------------------GENVKAINQQTGAFVEISRQLPPN-------GD 51 (107)
T ss_dssp CEEEEEEG------GGTTTTSTTT-----------------------TCHHHHHHHHSSSEEEECCCCCTT-------CC
T ss_pred eEEEEECH------HHcCccCCCC-----------------------cHHHHHHHHHhCCEEEEcCccCCC-------CC
Confidence 45666664 3789999999 999999999999999997432110 01
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 007659 290 HQPLHLFLSSNNPKSLEEAKRLAENLLD 317 (594)
Q Consensus 290 ~EPLHl~IS~~~pe~l~~Ak~L~EnLL~ 317 (594)
...-.|.|++ +++.+++|+++++++|.
T Consensus 52 ~~~r~V~I~G-~~e~v~~A~~~I~~~i~ 78 (107)
T 2hh2_A 52 PNFKLFIIRG-SPQQIDHAKQLIEEKIE 78 (107)
T ss_dssp TTEEEEEEES-CHHHHHHHHHHHHHHSC
T ss_pred CCceEEEEEC-CHHHHHHHHHHHHHHHh
Confidence 1224677877 99999999999999875
No 16
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=97.97 E-value=6.1e-06 Score=66.32 Aligned_cols=63 Identities=16% Similarity=0.226 Sum_probs=50.1
Q ss_pred ceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHH
Q 007659 224 NIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPK 303 (594)
Q Consensus 224 N~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gqEs~EPLHl~IS~~~pe 303 (594)
+.+|+|||++ |.++++|+++|||+|.|...+... . ....-.+.|++. ++
T Consensus 12 ~~vg~IIGkg-----------------------G~~Ik~I~~~tga~I~i~~~~~~~----~---~~~~~~v~I~G~-~~ 60 (76)
T 1dtj_A 12 NLVGAILGKG-----------------------GKTLVEYQELTGARIQISKKGEFL----P---GTRNRRVTITGS-PA 60 (76)
T ss_dssp TTHHHHHCST-----------------------THHHHHHHHHHCCEEEECCTTCCS----T---TCCEEEEEEEES-HH
T ss_pred HHcceEECCC-----------------------chHHHHHHHHhCCEEEECcCCCCC----C---CCceeEEEEEeC-HH
Confidence 3789999999 999999999999999998543211 1 112357888886 99
Q ss_pred HHHHHHHHHHHHHH
Q 007659 304 SLEEAKRLAENLLD 317 (594)
Q Consensus 304 ~l~~Ak~L~EnLL~ 317 (594)
.+++|+++++++|.
T Consensus 61 ~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 61 ATQAAQYLISQRVT 74 (76)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999863
No 17
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.97 E-value=5.9e-06 Score=70.49 Aligned_cols=77 Identities=29% Similarity=0.370 Sum_probs=61.2
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCCC
Q 007659 209 MSTSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEE 288 (594)
Q Consensus 209 ~s~kV~Igid~~P~fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gqE 288 (594)
.+..+.|+. .+.++|||++ |.+++.|+++|||+|.|-..|+.
T Consensus 17 vt~~i~Ip~------~~ig~IIG~g-----------------------G~~Ir~I~e~tg~~I~i~~~g~~--------- 58 (95)
T 2ctm_A 17 VSEDVPLDH------RVHARIIGAR-----------------------GKAIRKIMDEFKVDIRFPQSGAP--------- 58 (95)
T ss_dssp CCEEEECCT------TTHHHHHCSS-----------------------SCHHHHHHHHHTCEEECCCTTCS---------
T ss_pred EEEEEEECH------HHccccCCCC-----------------------cchHHHHHHHHCCeEEecCCCCC---------
Confidence 445565553 2678999999 99999999999999999654431
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhccc
Q 007659 289 VHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGAS 326 (594)
Q Consensus 289 s~EPLHl~IS~~~pe~l~~Ak~L~EnLL~tV~eEy~~~ 326 (594)
..-.+.|++. ++.+++|++++++|+....+++..+
T Consensus 59 --~~~~V~I~G~-~e~v~~A~~~I~~i~~e~~~~~~~~ 93 (95)
T 2ctm_A 59 --DPNCVTVTGL-PENVEEAIDHILNLEEEYLADSGPS 93 (95)
T ss_dssp --CTTEEEEESC-HHHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred --CCcEEEEEcC-HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 1357999998 6999999999999998887776543
No 18
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=97.95 E-value=4.6e-06 Score=69.68 Aligned_cols=74 Identities=22% Similarity=0.336 Sum_probs=56.5
Q ss_pred cceeEEEecCCCCCCCceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCC
Q 007659 208 AMSTSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGE 287 (594)
Q Consensus 208 ~~s~kV~Igid~~P~fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gq 287 (594)
....+|.|+. +.+++|||++ |.++|+|+++|||+|.|... ..
T Consensus 13 ~~~~~i~Ip~------~~vg~IIGkg-----------------------G~~Ik~I~~~tga~I~I~~~-------~~-- 54 (89)
T 1j5k_A 13 IITTQVTIPK------DLAGSIIGKG-----------------------GQRIKQIRHESGASIKIDEP-------LE-- 54 (89)
T ss_dssp EEEEEEEEEH------HHHHHHHCGG-----------------------GHHHHHHHHHTCCEEEECSC-------CS--
T ss_pred eEEEEEEECh------hhcceeECCC-----------------------CHhHHHHHHHhCCeEEecCC-------CC--
Confidence 3455666654 3889999999 99999999999999999631 00
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHHH
Q 007659 288 EVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISA 321 (594)
Q Consensus 288 Es~EPLHl~IS~~~pe~l~~Ak~L~EnLL~tV~e 321 (594)
+ ...-.+.|++. ++.+++|+++++++|.....
T Consensus 55 ~-~~~~~v~I~G~-~e~v~~A~~~I~~~i~e~~g 86 (89)
T 1j5k_A 55 G-SEDRIITITGT-QDQIQNAQYLLQNSVKQYSG 86 (89)
T ss_dssp S-SSEEEEEEEEE-HHHHHHHHHHHHHHHHHHC-
T ss_pred C-CCccEEEEEcC-HHHHHHHHHHHHHHHHhhhc
Confidence 1 12246888887 99999999999999876533
No 19
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=97.93 E-value=5.5e-06 Score=66.99 Aligned_cols=68 Identities=19% Similarity=0.206 Sum_probs=53.8
Q ss_pred eeEEEecCCCCCCCceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCCCC
Q 007659 210 STSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEV 289 (594)
Q Consensus 210 s~kV~Igid~~P~fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gqEs 289 (594)
..+|.|+- +.+|.|||++ |.++++|+++|||+|.|... . +.
T Consensus 6 ~~~i~Ip~------~~vg~iIGkg-----------------------G~~Ik~I~~~tga~I~i~~~----~------~~ 46 (76)
T 2p2r_A 6 SHELTIPN------DLIGCIIGRQ-----------------------GAKINEIRQMSGAQIKIANP----V------EG 46 (76)
T ss_dssp EEEEEEEH------HHHHHHHCGG-----------------------GHHHHHHHHHHCCEEEECCC----C------TT
T ss_pred EEEEEECh------HHcceEECCC-----------------------ChHHHHHHHHHCCEEEEcCC----C------CC
Confidence 44555653 3789999999 99999999999999999742 0 11
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 007659 290 HQPLHLFLSSNNPKSLEEAKRLAENLLD 317 (594)
Q Consensus 290 ~EPLHl~IS~~~pe~l~~Ak~L~EnLL~ 317 (594)
...-.+.|+|. ++.+++|++|++++|.
T Consensus 47 ~~~~~v~I~G~-~~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 47 STDRQVTITGS-AASISLAQYLINVRLS 73 (76)
T ss_dssp CSEEEEEEEEC-HHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEEeC-HHHHHHHHHHHHHHHH
Confidence 22357889887 9999999999999874
No 20
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.90 E-value=9.6e-06 Score=70.21 Aligned_cols=66 Identities=15% Similarity=0.150 Sum_probs=56.0
Q ss_pred ceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHH
Q 007659 224 NIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPK 303 (594)
Q Consensus 224 N~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gqEs~EPLHl~IS~~~pe 303 (594)
..+++|||++ |.+++.|++||||+|.|--.|+ ++-.|.|++.. +
T Consensus 26 ~~ig~IIG~g-----------------------G~~Ir~I~eetg~~I~I~~~g~------------~~~~V~I~G~~-e 69 (104)
T 2ctk_A 26 DLHRYVIGQK-----------------------GSGIRKMMDEFEVNIHVPAPEL------------QSDIIAITGLA-A 69 (104)
T ss_dssp HHHHHHHCSS-----------------------SHHHHHHHHHTCCEEECCCTTT------------TCCEEEEEECH-H
T ss_pred HHccceeCCC-----------------------chHHHHHHHHHCCEEEecCCCC------------CcceEEEEcCH-H
Confidence 3788999999 9999999999999999974433 12389999985 9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 007659 304 SLEEAKRLAENLLDTISAECGA 325 (594)
Q Consensus 304 ~l~~Ak~L~EnLL~tV~eEy~~ 325 (594)
.+++|++++++|+.....|+..
T Consensus 70 ~v~~A~~~I~~i~~e~e~~~~d 91 (104)
T 2ctk_A 70 NLDRAKAGLLERVKELQAEQED 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHhHHH
Confidence 9999999999999998887743
No 21
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=97.88 E-value=1.2e-05 Score=66.58 Aligned_cols=75 Identities=15% Similarity=0.197 Sum_probs=56.3
Q ss_pred eEEEecCCCCCCCceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCCCCC
Q 007659 211 TSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVH 290 (594)
Q Consensus 211 ~kV~Igid~~P~fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gqEs~ 290 (594)
.+|.|+- +.+|+|||++ |.++++|+++|||+|.|...+..+ .+ .
T Consensus 5 ~~i~IP~------~~vG~IIGkg-----------------------G~~Ik~I~~~tga~I~I~~~~~~~----~g---~ 48 (87)
T 1ec6_A 5 VEIAVPE------NLVGAILGKG-----------------------GKTLVEYQELTGARIQISKKGEFL----PG---T 48 (87)
T ss_dssp EEEEEEH------HHHHHHHCGG-----------------------GHHHHHHHHHHCCEEEECCTTCBS----TT---S
T ss_pred EEEEECh------HHcCeeECCC-----------------------cHhHHHHHHHhCCEEEEccCCCCC----CC---C
Confidence 4555553 3789999999 999999999999999998532110 01 1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHHHHHHHHHH
Q 007659 291 QPLHLFLSSNNPKSLEEAKRLAENLLDTISAE 322 (594)
Q Consensus 291 EPLHl~IS~~~pe~l~~Ak~L~EnLL~tV~eE 322 (594)
..-.+.|+|. ++.++.|+++++++|......
T Consensus 49 ~~r~v~I~G~-~~~v~~A~~~I~~~i~~~~~~ 79 (87)
T 1ec6_A 49 RNRRVTITGS-PAATQAAQYLISQRVTYEQGV 79 (87)
T ss_dssp CEEEEEEESS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEcC-HHHHHHHHHHHHHHHhccccc
Confidence 2256888886 999999999999999865443
No 22
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.88 E-value=1.5e-05 Score=68.21 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=59.4
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCCC
Q 007659 209 MSTSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEE 288 (594)
Q Consensus 209 ~s~kV~Igid~~P~fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gqE 288 (594)
.+.+|.|+. .++++|||++ |.+|+.|+++|||+|.|--.|..
T Consensus 17 ~~~~i~Ip~------~~ig~IIGkg-----------------------G~~Ik~I~~etg~~I~i~~~g~~--------- 58 (97)
T 2ctl_A 17 FKLSVTVDP------KYHPKIIGRK-----------------------GAVITQIRLEHDVNIQFPDKDDG--------- 58 (97)
T ss_dssp CEEEEECCT------TTHHHHSCSS-----------------------SCHHHHHHHHHTCEEECCCTTTC---------
T ss_pred eeEEEEECH------HHhhhcCCCC-----------------------chhHHHHHHHHCCEEEecCCCCC---------
Confidence 455565553 3788999999 99999999999999999744321
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHHHHh
Q 007659 289 VHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAEC 323 (594)
Q Consensus 289 s~EPLHl~IS~~~pe~l~~Ak~L~EnLL~tV~eEy 323 (594)
....-.|.|++. .+.+++|++++++|+..+.++.
T Consensus 59 ~~~~~~V~I~G~-~e~v~~A~~~I~~iv~e~e~~~ 92 (97)
T 2ctl_A 59 NQPQDQITITGY-EKNTEAARDAILRIVGELEQMS 92 (97)
T ss_dssp SSCSSEEEEESC-HHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCccEEEEEeC-HHHHHHHHHHHHHHHHHHHhhh
Confidence 112356999997 9999999999999998776654
No 23
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.83 E-value=1.5e-05 Score=66.81 Aligned_cols=66 Identities=18% Similarity=0.380 Sum_probs=50.7
Q ss_pred cceeEEEecCCCCCCCceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCC
Q 007659 208 AMSTSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGE 287 (594)
Q Consensus 208 ~~s~kV~Igid~~P~fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gq 287 (594)
.....|.|+. +++|.|||++ |.++|+|+++|||+|.|-.++
T Consensus 9 ~~~~~i~VP~------~~vG~IIGkg-----------------------G~tIk~Iqe~Tga~I~I~~~~---------- 49 (83)
T 2dgr_A 9 QTTIQVRVPY------RVVGLVVGPK-----------------------GATIKRIQQRTHTYIVTPGRD---------- 49 (83)
T ss_dssp SEEEEEECCH------HHHHHHHTTT-----------------------TSSHHHHHHHTTCEEECCCSS----------
T ss_pred ceEEEEEeCh------HHeeeeECCC-----------------------chHHHHHHHHhCCeEEecCCC----------
Confidence 3445555552 6899999999 999999999999999996321
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 007659 288 EVHQPLHLFLSSNNPKSLEEAKRLAENLL 316 (594)
Q Consensus 288 Es~EPLHl~IS~~~pe~l~~Ak~L~EnLL 316 (594)
+|+ .+.|++. ++.+++|++++++++
T Consensus 50 --~~~-~v~ItG~-~e~v~~A~~~I~~~i 74 (83)
T 2dgr_A 50 --KEP-VFAVTGM-PENVDRAREEIEAHI 74 (83)
T ss_dssp --SCC-EEEEEEC-TTTHHHHHHHHHHHH
T ss_pred --CCC-eEEEEcC-HHHHHHHHHHHHHHH
Confidence 132 3666665 599999999999864
No 24
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=97.80 E-value=1.7e-05 Score=68.10 Aligned_cols=73 Identities=16% Similarity=0.177 Sum_probs=56.1
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCCC
Q 007659 209 MSTSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEE 288 (594)
Q Consensus 209 ~s~kV~Igid~~P~fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gqE 288 (594)
...+|.|+. +++|+|||++ |.++++|+++|||+|.|-..+.+.
T Consensus 15 ~~~~i~Ip~------~~ig~IIGkg-----------------------G~~Ik~I~~~tga~I~I~~~~~~~-------- 57 (104)
T 1we8_A 15 VFEQLSVPQ------RSVGRIIGRG-----------------------GETIRSICKASGAKITCDKESEGT-------- 57 (104)
T ss_dssp EEEEEEEET------TTHHHHHTTT-----------------------SHHHHHHHHHHCCEEEECCSSCCS--------
T ss_pred EEEEEEECh------hheeeeECCC-----------------------CHHHHHHHHHHCCEEEEecCCCCC--------
Confidence 345666664 3789999999 999999999999999997543221
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 007659 289 VHQPLHLFLSSNNPKSLEEAKRLAENLLDTI 319 (594)
Q Consensus 289 s~EPLHl~IS~~~pe~l~~Ak~L~EnLL~tV 319 (594)
..+.-.|.|++... .+++|+++++++|...
T Consensus 58 ~~~~~~V~I~G~~~-~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 58 LLLSRLIKISGTQK-EVAAAKHLILEKVSED 87 (104)
T ss_dssp SSSEEEEEEEEEHH-HHHHHHHHHHHHHHHH
T ss_pred CCCcceEEEEcCHH-HHHHHHHHHHHHHhhC
Confidence 11235788988666 7999999999998753
No 25
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.80 E-value=1.2e-05 Score=68.11 Aligned_cols=71 Identities=10% Similarity=0.110 Sum_probs=56.2
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCCC
Q 007659 209 MSTSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEE 288 (594)
Q Consensus 209 ~s~kV~Igid~~P~fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gqE 288 (594)
.+..|.|+. ..+|.|||++ |.+++.|++||||+|.|-..++
T Consensus 17 ~t~~i~Ip~------~~ig~IIG~g-----------------------G~~Ik~I~~etg~~I~i~~~~~---------- 57 (94)
T 2cte_A 17 ASATVAIPK------EHHRFVIGKN-----------------------GEKLQDLELKTATKIQIPRPDD---------- 57 (94)
T ss_dssp EEEEEECCT------TTHHHHHCSS-----------------------SCHHHHHHHHTTCCCBCCCTTS----------
T ss_pred eEEEEEECh------HHeeeeECCC-----------------------ChhHHHHHHHHCCEEEeCCCCC----------
Confidence 455665553 2679999999 9999999999999999963221
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHHH
Q 007659 289 VHQPLHLFLSSNNPKSLEEAKRLAENLLDTISA 321 (594)
Q Consensus 289 s~EPLHl~IS~~~pe~l~~Ak~L~EnLL~tV~e 321 (594)
+.-.+.|++. ++.+++|++++++|+.....
T Consensus 58 --~~~~V~I~G~-~e~v~~A~~~I~~i~~~~~~ 87 (94)
T 2cte_A 58 --PSNQIKITGT-KEGIEKARHEVLLISAEQDK 87 (94)
T ss_dssp --SCCEEEEEEC-HHHHHHHHHHHHHHHHHHHT
T ss_pred --CCCeEEEEEC-HHHHHHHHHHHHHHhhcccc
Confidence 1248999998 99999999999999876543
No 26
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=97.78 E-value=1.1e-05 Score=66.14 Aligned_cols=70 Identities=19% Similarity=0.207 Sum_probs=53.8
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCCC
Q 007659 209 MSTSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEE 288 (594)
Q Consensus 209 ~s~kV~Igid~~P~fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gqE 288 (594)
...+|.|+. +.+|.|||++ |.++++|+++|||+|.|.... +
T Consensus 6 ~~~~i~Ip~------~~vg~IIGkg-----------------------G~~Ik~I~~~sga~I~i~~~~----------~ 46 (82)
T 1wvn_A 6 TTHELTIPN------NLIGCIIGRQ-----------------------GANINEIRQMSGAQIKIANPV----------E 46 (82)
T ss_dssp EEEEEEEEG------GGHHHHHCGG-----------------------GHHHHHHHHHHCCEEEECCCC----------T
T ss_pred EEEEEEEch------HhccceeCCC-----------------------chhHHHHHHHhCCEEEEecCC----------C
Confidence 445666664 3789999999 999999999999999997421 1
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHHHHH
Q 007659 289 VHQPLHLFLSSNNPKSLEEAKRLAENLLDT 318 (594)
Q Consensus 289 s~EPLHl~IS~~~pe~l~~Ak~L~EnLL~t 318 (594)
....-.|.|++. ++.+++|++|++++|..
T Consensus 47 ~~~~r~v~I~G~-~~~v~~A~~~I~~~i~~ 75 (82)
T 1wvn_A 47 GSSGRQVTITGS-AASISLAQYLINARLSS 75 (82)
T ss_dssp TCSEEEEEEEEC-HHHHHHHHHHHHHHTC-
T ss_pred CCCceEEEEEcC-HHHHHHHHHHHHHHHHh
Confidence 122357888885 59999999999999754
No 27
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.75 E-value=4.8e-05 Score=68.79 Aligned_cols=75 Identities=23% Similarity=0.274 Sum_probs=56.9
Q ss_pred EEeCCCCcc---ccccccchhHHHHHHhhhCCeEeecccccCCC-C--C------CCCCCCeEEeeecccchhhHHHHHH
Q 007659 108 IVINDSESS---VRYKLTKRHTQEEIQKCTGAVVITRGKYRLPN-A--P------PDGEKPLYLHISAGAHLKETAERIL 175 (594)
Q Consensus 108 IEINDlPq~---vRy~LTKg~Tq~eIqe~TGAsVtTRGrYyPPg-k--~------~~gEpPLYL~IeG~Te~ket~eR~k 175 (594)
|.+.++|.- -|.+-.+|.|+++|+++|||.|.+||+..-.. + . ...+.+||++|++.+. .
T Consensus 13 IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~--------e 84 (131)
T 1k1g_A 13 IPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTM--------E 84 (131)
T ss_dssp CCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSH--------H
T ss_pred ECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCH--------H
Confidence 444556622 36677999999999999999999999753221 1 1 1235699999999886 5
Q ss_pred HHHHHHHHHHHHHHc
Q 007659 176 AVDHAAAMVEEMLKQ 190 (594)
Q Consensus 176 aVDrAIalIeEIIKe 190 (594)
.+++|+++|+.+++.
T Consensus 85 ~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 689999999999976
No 28
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=97.71 E-value=2.1e-05 Score=63.59 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=48.6
Q ss_pred ceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHH
Q 007659 224 NIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPK 303 (594)
Q Consensus 224 N~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gqEs~EPLHl~IS~~~pe 303 (594)
+.+|.|||++ |.++++|+++|||+|.|-..|+ ..=.+.|+|. ++
T Consensus 14 ~~ig~iIGkg-----------------------G~~Ik~I~~~tga~I~i~~~~~------------~er~v~I~G~-~~ 57 (73)
T 2axy_A 14 KEVGSIIGKK-----------------------GESVKKMREESGARINISEGNC------------PERIITLAGP-TN 57 (73)
T ss_dssp HHHHHHHCGG-----------------------GHHHHHHHHHHCCEEEECSSCC------------SEEEEEEEEC-HH
T ss_pred hHeeeEECCC-----------------------CHHHHHHHHHHCCEEEEecCCC------------CcEEEEEEeC-HH
Confidence 4789999999 9999999999999999974321 1135888888 99
Q ss_pred HHHHHHHHHHHHHH
Q 007659 304 SLEEAKRLAENLLD 317 (594)
Q Consensus 304 ~l~~Ak~L~EnLL~ 317 (594)
.+.+|+++++++|.
T Consensus 58 ~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 58 AIFKAFAMIIDKLE 71 (73)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999885
No 29
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=97.66 E-value=1.9e-05 Score=63.74 Aligned_cols=56 Identities=18% Similarity=0.272 Sum_probs=47.3
Q ss_pred eeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q 007659 225 IAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKS 304 (594)
Q Consensus 225 ~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gqEs~EPLHl~IS~~~pe~ 304 (594)
+.++|||++ |.++++|++||||+|.|--.|. ..=.+.|++. .+.
T Consensus 15 ~ig~iIG~g-----------------------G~~I~~I~e~tg~~I~i~~~g~------------~~~~V~I~G~-~~~ 58 (71)
T 1vig_A 15 FHRHLIGKS-----------------------GANINRIKDQYKVSVRIPPDSE------------KSNLIRIEGD-PQG 58 (71)
T ss_dssp HHHHHTCSS-----------------------CCHHHHHHHHTCCEEECCCCCS------------SSEEEEEEES-SHH
T ss_pred HhhhhcCCC-----------------------CccHHHHHHHHCCEEEECCCCC------------cccEEEEEcC-HHH
Confidence 789999999 9999999999999999864331 1237899998 689
Q ss_pred HHHHHHHHHHHH
Q 007659 305 LEEAKRLAENLL 316 (594)
Q Consensus 305 l~~Ak~L~EnLL 316 (594)
+++|++++++|+
T Consensus 59 v~~A~~~I~~i~ 70 (71)
T 1vig_A 59 VQQAKRELLELA 70 (71)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999999874
No 30
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.65 E-value=8e-05 Score=66.67 Aligned_cols=66 Identities=26% Similarity=0.255 Sum_probs=51.3
Q ss_pred ccccc-cchhHHHHHHhhhCCeEeecccc---cCCCCCCCCCCCeEEeeecccchhhHHHHHHHHHHHHHHHHHHHHc
Q 007659 117 VRYKL-TKRHTQEEIQKCTGAVVITRGKY---RLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQ 190 (594)
Q Consensus 117 vRy~L-TKg~Tq~eIqe~TGAsVtTRGrY---yPPgk~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAIalIeEIIKe 190 (594)
.+-+| .+|.|++.|+++|||.|.+||+- +-+......+.+||++|.+.+. ..+++|+++|++++..
T Consensus 30 ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~--------e~i~~A~~~Ie~Ll~~ 99 (119)
T 2yqr_A 30 KEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKP--------EGLAAAKKLCENLLQT 99 (119)
T ss_dssp HHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSH--------HHHHHHHHHHHHHHHH
T ss_pred eeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCH--------HHHHHHHHHHHHHhhc
Confidence 34444 67999999999999999999873 2222223456799999999986 5789999999999864
No 31
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.60 E-value=3.2e-05 Score=74.06 Aligned_cols=141 Identities=16% Similarity=0.108 Sum_probs=89.2
Q ss_pred ccccccc-hhHHHHHHhhhCCeEeecccccCCCCCCCCCCCeEEeeecccchhhHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 007659 117 VRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGF 195 (594)
Q Consensus 117 vRy~LTK-g~Tq~eIqe~TGAsVtTRGrYyPPgk~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAIalIeEIIKe~P~~~ 195 (594)
+-+++.+ |++...|++.+|+.|..-. .++..- |.....+.+. ..+.+|..+|+.+...-+...
T Consensus 15 vg~liGk~g~~~k~i~e~~g~~i~id~----------~~~~V~--i~t~~~t~dp----~~i~KA~dlI~ai~rgf~~e~ 78 (191)
T 1tua_A 15 LGAVIGPRGEVKAEIMRRTGTVITVDT----------ENSMVI--VEPEAEGIPP----VNLMKAAEVVKAISLGFPPEK 78 (191)
T ss_dssp HHHHHCGGGHHHHHHHHHHTEEEEEET----------TTTEEE--EEESSTTSCH----HHHHHHHHHHHHHHHTCCHHH
T ss_pred hhHHHhcCHhHHHHHHHHHCcEEEEEc----------CCCeEE--EEeCCCCCCH----HHHHHHHHHHHHHHcCCCHHH
Confidence 4455544 8999999999999997643 244443 3322221222 468899999988765311000
Q ss_pred CCcccccCCCCCcceeEEEecC---CCCCC-CceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEE
Q 007659 196 PTLQTVMGNGVQAMSTSVFLGF---DADAS-LNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATV 271 (594)
Q Consensus 196 pt~~~~~~~G~~~~s~kV~Igi---d~~P~-fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV 271 (594)
+-.-... ....+.+.|.- .+... -..+|||||++ |.+++.||+.|||+|
T Consensus 79 --A~~Ll~D--d~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~-----------------------G~tik~iE~~Tg~~I 131 (191)
T 1tua_A 79 --AFRLLEE--DQILVVVDLKQVVGDSQNHLKRIKGRIIGEG-----------------------GRARRTIEEMTDTYI 131 (191)
T ss_dssp --HGGGGST--TEEEEEEETHHHHTTCHHHHHHHHHHHHCGG-----------------------GHHHHHHHHHHTCEE
T ss_pred --hhhcccC--cceeEEEEcccccccCchhHHHHhhheeCCC-----------------------ccHHHHHHHHHCceE
Confidence 0000000 11223333330 00000 12789999999 999999999999999
Q ss_pred EEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHH
Q 007659 272 LLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDT 318 (594)
Q Consensus 272 ~LRGKGSG~~E~~~gqEs~EPLHl~IS~~~pe~l~~Ak~L~EnLL~t 318 (594)
.|-|+ .++|.| .++.++.|++.+++||+.
T Consensus 132 ~v~~~-----------------~v~i~G-~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 132 NVGEY-----------------EVAIIG-DYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp EECSS-----------------EEEEEE-EHHHHHHHHHHHHHHHTT
T ss_pred EEcCC-----------------EEEEEe-ChHHHHHHHHHHHHHHcC
Confidence 99642 577766 688889999999999975
No 32
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=97.51 E-value=0.00021 Score=64.60 Aligned_cols=137 Identities=15% Similarity=0.278 Sum_probs=88.1
Q ss_pred EEeeEEeCCCCcccccccc-chhHHHHHHhhhCCeEeecccccCCCCCCCCCCCeEEeeecccchhhHHHHHHHHHHHHH
Q 007659 104 IAREIVINDSESSVRYKLT-KRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (594)
Q Consensus 104 f~aEIEINDlPq~vRy~LT-Kg~Tq~eIqe~TGAsVtTRGrYyPPgk~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAIa 182 (594)
|+.++.|..=+ +...+- +|+++..|++++|..|. .| . .++-.| .+.+.+. ..|.++
T Consensus 4 ~~~~~~Vp~~~--vG~~IG~~G~~I~~i~~e~gI~ii---~~-~------~~~~~~-i~~~~~p--------~~v~~~-- 60 (144)
T 2qnd_A 4 FHEQFIVREDL--MGLAIGTHGANIQQARKVPGVTAI---DL-D------EDTCTF-HIYGEDQ--------DAVKKA-- 60 (144)
T ss_dssp CEEEEECCGGG--HHHHHCGGGHHHHHHHTSTTEEEE---EE-E------TTTTEE-EEEESSH--------HHHHHH--
T ss_pred eEEEEEECCcc--eeeEECCChhHHHHHHHHHCCeEe---cc-C------CCchhe-eeccCCH--------HHHHHH--
Confidence 45566665555 677774 59999999999994443 12 1 123334 4556543 234443
Q ss_pred HHHHHHHcCCCCCCCcccccCCCCCcceeEEEecCCCCCCCceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHH
Q 007659 183 MVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINH 262 (594)
Q Consensus 183 lIeEIIKe~P~~~pt~~~~~~~G~~~~s~kV~Igid~~P~fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~ 262 (594)
+++|.-. +..|.|+- +.++++||.+ |.+++.
T Consensus 61 --~~~l~~~------------------e~~v~Vp~------~~~g~~IGK~-----------------------G~nIr~ 91 (144)
T 2qnd_A 61 --RSFLEFA------------------EDVIQVPR------NLVGKVIGKN-----------------------GKLIQE 91 (144)
T ss_dssp --HHHHCEE------------------EEEEEEEG------GGHHHHHCGG-----------------------GHHHHH
T ss_pred --HHhhhcc------------------eEEEEECH------HHcCeeECCC-----------------------CHHHHH
Confidence 3333210 14455442 3789999999 999999
Q ss_pred HHhhcCc-EEEEeecCCCCCCCCCCCCCCCCc-EEEEEeCCHHHHHHHHHHHHHHHHHH
Q 007659 263 IMNETGA-TVLLRGRGSGNSEGLQGEEVHQPL-HLFLSSNNPKSLEEAKRLAENLLDTI 319 (594)
Q Consensus 263 Iq~ETGa-KV~LRGKGSG~~E~~~gqEs~EPL-Hl~IS~~~pe~l~~Ak~L~EnLL~tV 319 (594)
|+++||| +|.|.+..... ....+-+ -|.|+| +.+.++.|++|++++|+.+
T Consensus 92 i~~~tG~~~I~i~~~~~~~------~~~~~~~~~vtI~G-~~~~v~~Ak~li~~~l~~l 143 (144)
T 2qnd_A 92 IVDKSGVVRVRIEAENEKN------VPQEEGMVPFVFVG-TKDSIANATVLLDYHLNYL 143 (144)
T ss_dssp HHHHHTCSEEEEEEECTTC------CCCCTTEEEEEEEE-EHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCEEEEEcCCCCCC------ccccCCeeEEEEEe-CHHHHHHHHHHHHHHHHhc
Confidence 9999997 99998753221 1112333 255665 7889999999999999753
No 33
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=97.26 E-value=0.00023 Score=64.79 Aligned_cols=63 Identities=17% Similarity=0.341 Sum_probs=50.0
Q ss_pred ceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHH
Q 007659 224 NIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPK 303 (594)
Q Consensus 224 N~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gqEs~EPLHl~IS~~~pe 303 (594)
+.+|+|||++ |.++|+|+++|||+|.|... ++ ....-.|.|++. ++
T Consensus 12 ~~vg~iIGkg-----------------------G~~Ik~i~~~tg~~I~i~~~-----~~-----~~~~r~v~I~G~-~~ 57 (174)
T 1j4w_A 12 FAVGIVIGRN-----------------------GEMIKKIQNDAGVRIQFKPD-----DG-----TTPERIAQITGP-PD 57 (174)
T ss_dssp HHHHHHHCGG-----------------------GHHHHHHHHHHCCEEEEECC-----TT-----SCSEEEEEEEEC-HH
T ss_pred hheeeeecCC-----------------------chHHHHHHHHhCCEEEEecC-----CC-----CCCccEEEEEeC-HH
Confidence 3789999999 99999999999999999631 00 111245778877 89
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007659 304 SLEEAKRLAENLLDTIS 320 (594)
Q Consensus 304 ~l~~Ak~L~EnLL~tV~ 320 (594)
.+++|+++++++|....
T Consensus 58 ~v~~A~~~I~~~~~~~~ 74 (174)
T 1j4w_A 58 RAQHAAEIITDLLRSVQ 74 (174)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999987653
No 34
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=97.13 E-value=0.00046 Score=61.55 Aligned_cols=62 Identities=18% Similarity=0.303 Sum_probs=48.2
Q ss_pred eeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q 007659 225 IAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKS 304 (594)
Q Consensus 225 ~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gqEs~EPLHl~IS~~~pe~ 304 (594)
.+|+|||++ |.++++|+++|||+|.+--.+.. .....-.+.|++ +++.
T Consensus 12 ~~g~iIGk~-----------------------G~~Ik~i~~~tg~~I~i~~~~~~--------~~~~~r~v~I~G-~~~~ 59 (164)
T 2jvz_A 12 KAGLVIGKG-----------------------GETIKQLQERAGVKMILIQDGSQ--------NTNVDKPLRIIG-DPYK 59 (164)
T ss_dssp CHHHHTCTT-----------------------THHHHHHHHTSCSEEEECCCTTS--------SSSSCEEEEEEE-CHHH
T ss_pred heeEEECCC-----------------------hHHHHHHHHHhCCeEEEecCCCC--------CCCCceEEEEEc-CHHH
Confidence 689999999 99999999999999998532210 111224678888 7899
Q ss_pred HHHHHHHHHHHHHH
Q 007659 305 LEEAKRLAENLLDT 318 (594)
Q Consensus 305 l~~Ak~L~EnLL~t 318 (594)
+++|+.++.+++..
T Consensus 60 v~~A~~~I~~ii~e 73 (164)
T 2jvz_A 60 VQQACEMVMDILRE 73 (164)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988753
No 35
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.13 E-value=0.00032 Score=60.06 Aligned_cols=59 Identities=22% Similarity=0.365 Sum_probs=49.5
Q ss_pred eeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhc-CcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHH
Q 007659 225 IAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNET-GATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPK 303 (594)
Q Consensus 225 ~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ET-GaKV~LRGKGSG~~E~~~gqEs~EPLHl~IS~~~pe 303 (594)
+.+.||||+ |.+++.|++|| ||+|.|--.|++ .-.+.|.+.+.
T Consensus 27 ~i~~iIG~g-----------------------Gk~Ir~I~eetggv~I~i~~~g~~------------~~~V~I~G~~~- 70 (95)
T 2ctj_A 27 LHNSLIGTK-----------------------GRLIRSIMEECGGVHIHFPVEGSG------------SDTVVIRGPSS- 70 (95)
T ss_dssp HHHHHHCSS-----------------------SHHHHHHHHHHTSCEEECCCTTTT------------CCEEEEESCHH-
T ss_pred HHhhhCCCC-----------------------chhHHHHHHHcCCCEEEeCCCCCC------------cceEEEEcCHH-
Confidence 677899999 99999999999 999988643321 24799999988
Q ss_pred HHHHHHHHHHHHHHHH
Q 007659 304 SLEEAKRLAENLLDTI 319 (594)
Q Consensus 304 ~l~~Ak~L~EnLL~tV 319 (594)
.+++|++++++|+..+
T Consensus 71 ~v~~A~~~I~~iv~e~ 86 (95)
T 2ctj_A 71 DVEKAKKQLLHLAEEK 86 (95)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999998654
No 36
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=96.99 E-value=0.00031 Score=60.62 Aligned_cols=53 Identities=15% Similarity=0.220 Sum_probs=46.5
Q ss_pred eeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcE-EEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHH
Q 007659 225 IAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGAT-VLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPK 303 (594)
Q Consensus 225 ~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaK-V~LRGKGSG~~E~~~gqEs~EPLHl~IS~~~pe 303 (594)
.+|.+|||+ |.+++.|+++|||+ |-|- | +.=.|.|.+.+.+
T Consensus 25 kIg~vIG~g-----------------------Gk~Ik~I~e~tGv~~IdI~-------------e--ddG~V~I~g~~~e 66 (91)
T 2cpq_A 25 LMGLAIGTH-----------------------GSNIQQARKVPGVTAIELD-------------E--DTGTFRIYGESAD 66 (91)
T ss_dssp HHHHHHTTT-----------------------THHHHHHHTSTTEEEEEEE-------------T--TTTEEEEEESSHH
T ss_pred HhhhhcCCC-----------------------cHHHHHHHHHhCCeEEEEE-------------c--CCCEEEEEECCHH
Confidence 688999999 99999999999998 9994 1 2257999999999
Q ss_pred HHHHHHHHHHHH
Q 007659 304 SLEEAKRLAENL 315 (594)
Q Consensus 304 ~l~~Ak~L~EnL 315 (594)
.+++|+++++++
T Consensus 67 a~~~A~~~I~~i 78 (91)
T 2cpq_A 67 AVKKARGFLEFV 78 (91)
T ss_dssp HHHHHHHHHSCC
T ss_pred HHHHHHHHHHhh
Confidence 999999998765
No 37
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=96.82 E-value=0.0017 Score=59.86 Aligned_cols=80 Identities=18% Similarity=0.247 Sum_probs=54.3
Q ss_pred EEeCCCCcc---ccccccchhHHHHHHhhhCCeEeecccccCCC---------CC--CCCCCCeEEeeecccchhhHHHH
Q 007659 108 IVINDSESS---VRYKLTKRHTQEEIQKCTGAVVITRGKYRLPN---------AP--PDGEKPLYLHISAGAHLKETAER 173 (594)
Q Consensus 108 IEINDlPq~---vRy~LTKg~Tq~eIqe~TGAsVtTRGrYyPPg---------k~--~~gEpPLYL~IeG~Te~ket~eR 173 (594)
|.++++|-- -|.+=-+|.|++.|+++|||.|.+||+----+ .+ ...+.|||++|++.+....-.
T Consensus 8 IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~~~~-- 85 (140)
T 2bl5_A 8 VPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAE-- 85 (140)
T ss_dssp CCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHHHH--
T ss_pred cCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchhhHH--
Confidence 344555521 23344789999999999999999999742111 00 124689999999976511111
Q ss_pred HHHHHHHHHHHHHHHHc
Q 007659 174 ILAVDHAAAMVEEMLKQ 190 (594)
Q Consensus 174 ~kaVDrAIalIeEIIKe 190 (594)
..+++|+++|+.+|..
T Consensus 86 -~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 86 -LKLKRAVEEVKKLLVP 101 (140)
T ss_dssp -HHHHHHHHHHHHHSSC
T ss_pred -HHHHHHHHHHHHHCCC
Confidence 3589999999999864
No 38
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=96.64 E-value=0.0013 Score=58.81 Aligned_cols=59 Identities=14% Similarity=0.200 Sum_probs=48.1
Q ss_pred ceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHH
Q 007659 224 NIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPK 303 (594)
Q Consensus 224 N~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gqEs~EPLHl~IS~~~pe 303 (594)
..+|+|||++ |.++++|+++|||+|.|-..|+ ..-.+.|++. .+
T Consensus 14 ~~~g~iIGkg-----------------------G~~Ik~i~~~tg~~I~i~~~~~------------~~r~v~I~G~-~~ 57 (160)
T 2jzx_A 14 KEVGSIIGKK-----------------------GESVKKMREESGARINISEGNC------------PERIITLAGP-TN 57 (160)
T ss_dssp HHHHHHHCGG-----------------------GHHHHHHHHHHCSEEEEECCTT------------TEEEEEEEEE-HH
T ss_pred hheeeeECCC-----------------------cHHHHHHHHHHCCEEEEcCCCC------------CceEEEEEeC-HH
Confidence 3789999999 9999999999999999974321 1246778886 89
Q ss_pred HHHHHHHHHHHHHHH
Q 007659 304 SLEEAKRLAENLLDT 318 (594)
Q Consensus 304 ~l~~Ak~L~EnLL~t 318 (594)
.+.+|+.++.+++..
T Consensus 58 ~v~~A~~~I~~~i~e 72 (160)
T 2jzx_A 58 AIFKAFAMIIDKLEE 72 (160)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999888754
No 39
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=96.57 E-value=0.0016 Score=59.21 Aligned_cols=72 Identities=18% Similarity=0.168 Sum_probs=51.2
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCCC
Q 007659 209 MSTSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEE 288 (594)
Q Consensus 209 ~s~kV~Igid~~P~fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gqE 288 (594)
...+|.|+. ..+|+|||++ |.++++|+++|||+|.|.-.+-.+ . .
T Consensus 6 ~~~~i~vp~------~~ig~iIGkg-----------------------G~~Ik~i~~~tg~~I~i~~~~~~~----~--~ 50 (178)
T 2anr_A 6 YFLKVLIPS------YAAGSIIGKG-----------------------GQTIVQLQKETGATIKLSKSKDFY----P--G 50 (178)
T ss_dssp EEEEEEEEH------HHHHHHHCGG-----------------------GHHHHHHHHHHCCEEEECCTTCBC----T--T
T ss_pred EEEEEEECh------hHeeeeECCC-----------------------cHHHHHHHHHhCCeEEEecCCCCC----C--C
Confidence 344555553 3789999999 999999999999999996432111 0 0
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 007659 289 VHQPLHLFLSSNNPKSLEEAKRLAENLLD 317 (594)
Q Consensus 289 s~EPLHl~IS~~~pe~l~~Ak~L~EnLL~ 317 (594)
..| =.+.|++. ++.+++|++++++++.
T Consensus 51 ~~e-r~v~I~G~-~~~v~~A~~~I~~~~~ 77 (178)
T 2anr_A 51 TTE-RVCLIQGT-IEALNAVHGFIAEKIR 77 (178)
T ss_dssp SSE-EEEEEEEC-HHHHHHHHHHHHHHHT
T ss_pred CCC-ceEEEEeC-HHHHHHHHHHHHHHHh
Confidence 111 24667775 8899999999888874
No 40
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=96.50 E-value=0.0026 Score=57.03 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=48.0
Q ss_pred eeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q 007659 225 IAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKS 304 (594)
Q Consensus 225 ~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gqEs~EPLHl~IS~~~pe~ 304 (594)
.+|.|||++ |.++++|+++|||+|.|--.|.. . ...--|.|++ +++.
T Consensus 13 ~~g~iIGk~-----------------------G~~Ik~i~~~tg~~I~i~~~~~~--------~-~~~r~v~I~G-~~e~ 59 (163)
T 3krm_A 13 AVGAIIGKK-----------------------GQHIKQLSRFASASIKIAPPETP--------D-SKVRMVIITG-PPEA 59 (163)
T ss_dssp GHHHHHCGG-----------------------GHHHHHHHHHHTCEEEECCCSST--------T-CSEEEEEEEE-CHHH
T ss_pred hcceeECCC-----------------------cHHHHHHHHHHCCeEEEcCCCCC--------C-CCceEEEEEc-CHHH
Confidence 689999999 99999999999999999743210 1 1223477777 8999
Q ss_pred HHHHHHHHHHHHHH
Q 007659 305 LEEAKRLAENLLDT 318 (594)
Q Consensus 305 l~~Ak~L~EnLL~t 318 (594)
+.+|+.++.+++..
T Consensus 60 v~~A~~~I~~~~~e 73 (163)
T 3krm_A 60 QFKAQGRIYGKLKE 73 (163)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998888753
No 41
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=95.86 E-value=0.0046 Score=68.29 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=46.0
Q ss_pred eeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q 007659 225 IAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKS 304 (594)
Q Consensus 225 ~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gqEs~EPLHl~IS~~~pe~ 304 (594)
.++.||||+ |.++|.|++||||+|.|- +.=.+.|.+.+.+.
T Consensus 577 kI~~vIG~g-----------------------G~~Ik~I~e~tg~~I~I~----------------d~G~V~I~~~~~~~ 617 (630)
T 3u1k_A 577 KRAKFVGPG-----------------------GYNLKKLQAETGVTISQV----------------DEETFSVFAPTPSA 617 (630)
T ss_dssp HHHHHHCGG-----------------------GHHHHHHHHHHCCEEEEC----------------SSSEEEEEESSHHH
T ss_pred HhheeECCC-----------------------ChhHHHHHHHHCCEEEEc----------------CCcEEEEEeCCHHH
Confidence 578899999 999999999999999875 12479999999999
Q ss_pred HHHHHHHHHHHHH
Q 007659 305 LEEAKRLAENLLD 317 (594)
Q Consensus 305 l~~Ak~L~EnLL~ 317 (594)
+++|++++++|+.
T Consensus 618 ~~~A~~~I~~i~~ 630 (630)
T 3u1k_A 618 MHEARDFITEICK 630 (630)
T ss_dssp HHHHHHHTTC---
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998863
No 42
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=94.96 E-value=0.035 Score=47.90 Aligned_cols=60 Identities=12% Similarity=0.165 Sum_probs=49.9
Q ss_pred eeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhh-cCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHH
Q 007659 225 IAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNE-TGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPK 303 (594)
Q Consensus 225 ~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~E-TGaKV~LRGKGSG~~E~~~gqEs~EPLHl~IS~~~pe 303 (594)
+.+.|||++ |+++++|+.+ +++.|.+=. ++ --+.|.|+ .+
T Consensus 37 ~h~~IIG~~-----------------------G~~Ik~i~~~~~~v~I~fp~------------~~---~~ItI~G~-~~ 77 (102)
T 2ctf_A 37 LHRFIIGKK-----------------------GQNLAKITQQMPKVHIEFTE------------GE---DKITLEGP-TE 77 (102)
T ss_dssp THHHHHTTT-----------------------TCHHHHHHHHCSSSEEEECS------------SS---CEEEEEEC-HH
T ss_pred HHhhhcCCC-----------------------CccHHHHHHHcCCcEEEeCC------------CC---CEEEEECC-HH
Confidence 567899999 9999999997 588886642 11 26999999 99
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 007659 304 SLEEAKRLAENLLDTISAEC 323 (594)
Q Consensus 304 ~l~~Ak~L~EnLL~tV~eEy 323 (594)
.+++|+..+++|++...++.
T Consensus 78 ~V~~a~~~I~~~v~el~~~~ 97 (102)
T 2ctf_A 78 DVSVAQEQIEGMVKDLINRS 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999887764
No 43
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=94.70 E-value=0.13 Score=42.35 Aligned_cols=69 Identities=25% Similarity=0.374 Sum_probs=49.7
Q ss_pred EeeEEeCCCCccccccccc-hhHHHHHHhhhCCeEeecccccCCCC-CCCCCCCeEEeeecccchhhHHHHHHHHHHHHH
Q 007659 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNA-PPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (594)
Q Consensus 105 ~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGAsVtTRGrYyPPgk-~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAIa 182 (594)
..+|.|..- .++.++-| |+|+++|+++|||.|.+... +. ....++.+ .|.| +. ..+++|+.
T Consensus 15 ~~~i~Ip~~--~ig~IIGkgG~~Ik~I~~~tga~I~i~~~----~~~~~~~er~v--~I~G-~~--------~~v~~A~~ 77 (85)
T 2opv_A 15 VQEIMIPAG--KAGLVIGKGGETIKQLQERAGVKMILIQD----GSQNTNVDKPL--RIIG-DP--------YKVQQACE 77 (85)
T ss_dssp EEEEEECTT--THHHHHTTTTHHHHHHHHHHTCEEEECSS----SCSSTTSCEEE--EEEE-CH--------HHHHHHHH
T ss_pred EEEEEeChh--heeeeECCCCHHHHHHHHHHCCEEEEcCC----CCCCCCCceEE--EEEe-CH--------HHHHHHHH
Confidence 457788653 37777766 99999999999999977542 11 12345555 5678 43 47899999
Q ss_pred HHHHHHHc
Q 007659 183 MVEEMLKQ 190 (594)
Q Consensus 183 lIeEIIKe 190 (594)
+|++++++
T Consensus 78 ~I~~i~~e 85 (85)
T 2opv_A 78 MVMDILRE 85 (85)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhcC
Confidence 99998764
No 44
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=94.69 E-value=0.022 Score=63.96 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=13.8
Q ss_pred eeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q 007659 225 IAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKS 304 (594)
Q Consensus 225 ~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gqEs~EPLHl~IS~~~pe~ 304 (594)
.++.+|||+ |.+||.|++||||+|-|. +.-.+.|.+.+.+.
T Consensus 580 ki~~vig~g-----------------------g~~i~~i~~~tg~~idi~----------------ddG~v~I~~~~~~~ 620 (726)
T 4aid_A 580 KIREVIGSG-----------------------GKVIREIVATTGAKVDIN----------------DDGVVKVSASDGAK 620 (726)
T ss_dssp -------------------------------------------------------------------------CCSCHHH
T ss_pred HHHhhcCCC-----------------------chhHHHHHHHHCCceeEE----------------CCceEEEEeCCHHH
Confidence 567899999 999999999999999765 23578899999999
Q ss_pred HHHHHHHHHHHHHH
Q 007659 305 LEEAKRLAENLLDT 318 (594)
Q Consensus 305 l~~Ak~L~EnLL~t 318 (594)
+++|++.++.|+..
T Consensus 621 ~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 621 IKAAIDWIKSITDE 634 (726)
T ss_dssp HHHHHHC-------
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999999864
No 45
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=94.50 E-value=0.15 Score=41.63 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=50.5
Q ss_pred EEeeEEeCCCCccccccccc-hhHHHHHHhhhCCeEeecccccCCCCCCCCCCCeEEeeecccchhhHHHHHHHHHHHHH
Q 007659 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (594)
Q Consensus 104 f~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGAsVtTRGrYyPPgk~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAIa 182 (594)
+..+|.|..-- ++.++-| |.++++|+++|||.|.+... .....++ .+.|.|.. ..+++|+.
T Consensus 7 ~~~~i~Vp~~~--vg~iIGkgG~~Ik~I~~~tga~I~i~~~-----~~~~~~~--~v~I~G~~---------~~v~~A~~ 68 (82)
T 1zzk_A 7 ITTQVTIPKDL--AGSIIGKGGQRIKQIRHESGASIKIDEP-----LEGSEDR--IITITGTQ---------DQIQNAQY 68 (82)
T ss_dssp EEEEEEEETTT--GGGGTCGGGHHHHHHHHHHCCEEEECCT-----TSCSSEE--EEEEEECH---------HHHHHHHH
T ss_pred EEEEEEEChHh--cCeeECCCchHHHHHHHHHCCEEEEcCC-----CCCCCce--EEEEEeCH---------HHHHHHHH
Confidence 45567776543 7888866 89999999999999987532 1111233 46778853 47899999
Q ss_pred HHHHHHHcC
Q 007659 183 MVEEMLKQG 191 (594)
Q Consensus 183 lIeEIIKe~ 191 (594)
+|++++++.
T Consensus 69 ~I~~~i~~~ 77 (82)
T 1zzk_A 69 LLQNSVKQY 77 (82)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998763
No 46
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=93.69 E-value=0.088 Score=55.21 Aligned_cols=53 Identities=19% Similarity=0.168 Sum_probs=36.9
Q ss_pred c--hhHHHHHhhcCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 007659 257 D--QYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLL 316 (594)
Q Consensus 257 G--s~lk~Iq~ETGaKV~LRGKGSG~~E~~~gqEs~EPLHl~IS~~~pe~l~~Ak~L~EnLL 316 (594)
| ..|++|+++|||+|.+-..|+... .....-.+.|+| ..+.+.+|++.+++||
T Consensus 205 G~n~~IkkIr~eTGv~I~FP~~~d~~d------~~~~~~~ItItG-s~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 205 STAQLMPVIERETTTIISYPCYNNRNE------TRGNIYEIKVVG-NIDNVLKARRYIMDLL 259 (376)
T ss_dssp TSCCHHHHHHHHHTCEEECC---------------CCEEEEEEES-CHHHHHHHHHHHHHTS
T ss_pred CcchHHHHHHHhhCCEEECCCCCCccc------ccCCceEEEEEe-CHHHHHHHHHHHHhhC
Confidence 7 456999999999999876554311 111224688888 8999999999999987
No 47
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=93.60 E-value=0.13 Score=40.90 Aligned_cols=70 Identities=21% Similarity=0.197 Sum_probs=47.3
Q ss_pred eeEEeCCCCccccccccc-hhHHHHHHhhhCCeEeecccccCCCCCCCCCCCeEEeeecccchhhHHHHHHHHHHHHHHH
Q 007659 106 REIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMV 184 (594)
Q Consensus 106 aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGAsVtTRGrYyPPgk~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAIalI 184 (594)
.+|.|..-- ++.++-+ |.++++|++.|||.|.+... +...++..--.+.|.|.. ..++.|+.+|
T Consensus 5 ~~i~Ip~~~--vg~IIGkgG~~Ik~I~~~tga~I~i~~~----~~~~~~~~~~~v~I~G~~---------~~v~~A~~~I 69 (76)
T 1dtj_A 5 VEMAVPENL--VGAILGKGGKTLVEYQELTGARIQISKK----GEFLPGTRNRRVTITGSP---------AATQAAQYLI 69 (76)
T ss_dssp EEEEEETTT--HHHHHCSTTHHHHHHHHHHCCEEEECCT----TCCSTTCCEEEEEEEESH---------HHHHHHHHHH
T ss_pred EEEEEChHH--cceEECCCchHHHHHHHHhCCEEEECcC----CCCCCCCceeEEEEEeCH---------HHHHHHHHHH
Confidence 355554433 6777755 89999999999999977532 111123333456778864 4789999999
Q ss_pred HHHHHc
Q 007659 185 EEMLKQ 190 (594)
Q Consensus 185 eEIIKe 190 (594)
++++.+
T Consensus 70 ~~~i~e 75 (76)
T 1dtj_A 70 SQRVTY 75 (76)
T ss_dssp HHHCC-
T ss_pred HHHHhc
Confidence 998764
No 48
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.54 E-value=0.15 Score=42.63 Aligned_cols=66 Identities=20% Similarity=0.241 Sum_probs=50.1
Q ss_pred EEeeEEeCCCCccccccccc-hhHHHHHHhhhCCeEeecccccCCCCCCCCCCCeEEeeecccchhhHHHHHHHHHHHHH
Q 007659 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (594)
Q Consensus 104 f~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGAsVtTRGrYyPPgk~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAIa 182 (594)
+..+|.|.+ ..+++++-| |+|+++|+++|||.|.+-.+ +.++ .+.|.|..+ .+++|+.
T Consensus 10 ~~~~i~VP~--~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~--------~~~~--~v~ItG~~e---------~v~~A~~ 68 (83)
T 2dgr_A 10 TTIQVRVPY--RVVGLVVGPKGATIKRIQQRTHTYIVTPGR--------DKEP--VFAVTGMPE---------NVDRARE 68 (83)
T ss_dssp EEEEEECCH--HHHHHHHTTTTSSHHHHHHHTTCEEECCCS--------SSCC--EEEEEECTT---------THHHHHH
T ss_pred eEEEEEeCh--HHeeeeECCCchHHHHHHHHhCCeEEecCC--------CCCC--eEEEEcCHH---------HHHHHHH
Confidence 356788876 558999866 99999999999999976321 1233 367788764 6899999
Q ss_pred HHHHHHHc
Q 007659 183 MVEEMLKQ 190 (594)
Q Consensus 183 lIeEIIKe 190 (594)
+|.+++..
T Consensus 69 ~I~~~i~~ 76 (83)
T 2dgr_A 69 EIEAHITL 76 (83)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhc
Confidence 99998765
No 49
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=93.47 E-value=0.063 Score=52.17 Aligned_cols=62 Identities=15% Similarity=0.167 Sum_probs=50.0
Q ss_pred eEEEecCCCCCCCceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCCCCC
Q 007659 211 TSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVH 290 (594)
Q Consensus 211 ~kV~Igid~~P~fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gqEs~ 290 (594)
.+|.|+. +-++.|||++ |.+++.|+++|||+|.|--.
T Consensus 36 ~~i~IP~------~kig~lIG~g-----------------------Gk~Ik~I~e~tgvkI~I~~~-------------- 72 (219)
T 2e3u_A 36 EYVKIPK------DRIAVLIGKK-----------------------GQTKKEIEKRTKTKITIDSE-------------- 72 (219)
T ss_dssp EEEECCH------HHHHHHHCGG-----------------------GHHHHHHHHHHTEEEEECTT--------------
T ss_pred EEEEeCH------HHhhhhhccc-----------------------HHHHHHHHHHHCcEEEEEcC--------------
Confidence 4555553 3678899999 99999999999999999511
Q ss_pred CCcEEEEEeCC----HHHHHHHHHHHHHHH
Q 007659 291 QPLHLFLSSNN----PKSLEEAKRLAENLL 316 (594)
Q Consensus 291 EPLHl~IS~~~----pe~l~~Ak~L~EnLL 316 (594)
.=.+.|.+.+ ++.+++|+++++.|.
T Consensus 73 -~g~V~I~~~~~t~d~~~i~kA~~~I~~i~ 101 (219)
T 2e3u_A 73 -TGEVWITSTKETEDPLAVWKARDIVLAIG 101 (219)
T ss_dssp -TCEEEEEECTTCCSHHHHHHHHHHHHHHH
T ss_pred -CCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 1247788876 999999999999987
No 50
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=93.43 E-value=0.12 Score=42.05 Aligned_cols=69 Identities=14% Similarity=0.240 Sum_probs=48.5
Q ss_pred EeeEEeCCCCccccccccc-hhHHHHHHhhhCCeEeecccccCCCCCCCCCCCeEEeeecccchhhHHHHHHHHHHHHHH
Q 007659 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAM 183 (594)
Q Consensus 105 ~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGAsVtTRGrYyPPgk~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAIal 183 (594)
..+|.|..-- ++.++-| |.++++|+++|||.|.+.... ....++ .+.|.|.. ..+++|+.+
T Consensus 7 ~~~i~Ip~~~--vg~IIGkgG~~Ik~I~~~sga~I~i~~~~-----~~~~~r--~v~I~G~~---------~~v~~A~~~ 68 (82)
T 1wvn_A 7 THELTIPNNL--IGCIIGRQGANINEIRQMSGAQIKIANPV-----EGSSGR--QVTITGSA---------ASISLAQYL 68 (82)
T ss_dssp EEEEEEEGGG--HHHHHCGGGHHHHHHHHHHCCEEEECCCC-----TTCSEE--EEEEEECH---------HHHHHHHHH
T ss_pred EEEEEEchHh--ccceeCCCchhHHHHHHHhCCEEEEecCC-----CCCCce--EEEEEcCH---------HHHHHHHHH
Confidence 4566665543 6777766 899999999999999875431 112244 45677865 378999999
Q ss_pred HHHHHHcC
Q 007659 184 VEEMLKQG 191 (594)
Q Consensus 184 IeEIIKe~ 191 (594)
|.+++.++
T Consensus 69 I~~~i~~~ 76 (82)
T 1wvn_A 69 INARLSSE 76 (82)
T ss_dssp HHHHTC--
T ss_pred HHHHHHhh
Confidence 99998765
No 51
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=93.28 E-value=0.13 Score=41.32 Aligned_cols=69 Identities=14% Similarity=0.256 Sum_probs=49.0
Q ss_pred EeeEEeCCCCccccccccc-hhHHHHHHhhhCCeEeecccccCCCCCCCCCCCeEEeeecccchhhHHHHHHHHHHHHHH
Q 007659 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAM 183 (594)
Q Consensus 105 ~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGAsVtTRGrYyPPgk~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAIal 183 (594)
..+|.|..- .++.++-+ |.++++|++.|||.|.+... . ....++ .+.|.|.. ..+++|+.+
T Consensus 6 ~~~i~Ip~~--~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--~---~~~~~~--~v~I~G~~---------~~v~~A~~~ 67 (76)
T 2p2r_A 6 SHELTIPND--LIGCIIGRQGAKINEIRQMSGAQIKIANP--V---EGSTDR--QVTITGSA---------ASISLAQYL 67 (76)
T ss_dssp EEEEEEEHH--HHHHHHCGGGHHHHHHHHHHCCEEEECCC--C---TTCSEE--EEEEEECH---------HHHHHHHHH
T ss_pred EEEEEEChH--HcceEECCCChHHHHHHHHHCCEEEEcCC--C---CCCCeE--EEEEEeCH---------HHHHHHHHH
Confidence 445666543 36777766 89999999999999987642 1 112344 45678863 479999999
Q ss_pred HHHHHHcC
Q 007659 184 VEEMLKQG 191 (594)
Q Consensus 184 IeEIIKe~ 191 (594)
|.+++.++
T Consensus 68 I~~~i~~E 75 (76)
T 2p2r_A 68 INVRLSSE 75 (76)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHcc
Confidence 99998764
No 52
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=93.25 E-value=0.15 Score=43.96 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=49.4
Q ss_pred eEEeCCCCccccccccc-hhHHHHHHhhhCCeEeecccccCCCCCCCCCCCeEEeeecccchhhHHHHHHHHHHHHHHHH
Q 007659 107 EIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVE 185 (594)
Q Consensus 107 EIEINDlPq~vRy~LTK-g~Tq~eIqe~TGAsVtTRGrYyPPgk~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAIalIe 185 (594)
+|.|..- .++.+|-| |+++++|+++|||.|.+...--+ ..+..--.+.|.|.. ..|++|+.+|+
T Consensus 10 ~i~IP~~--~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~----~~~~~~r~V~I~G~~---------e~v~~A~~~I~ 74 (107)
T 2hh2_A 10 TFSIPTH--KCGLVIGRGGENVKAINQQTGAFVEISRQLPP----NGDPNFKLFIIRGSP---------QQIDHAKQLIE 74 (107)
T ss_dssp EEEEEGG--GTTTTSTTTTCHHHHHHHHSSSEEEECCCCCT----TCCTTEEEEEEESCH---------HHHHHHHHHHH
T ss_pred EEEECHH--HcCccCCCCcHHHHHHHHHhCCEEEEcCccCC----CCCCCceEEEEECCH---------HHHHHHHHHHH
Confidence 5566543 37788866 89999999999999987543211 111122346778843 47999999999
Q ss_pred HHHHcCC
Q 007659 186 EMLKQGH 192 (594)
Q Consensus 186 EIIKe~P 192 (594)
+++.+..
T Consensus 75 ~~i~e~~ 81 (107)
T 2hh2_A 75 EKIEGPL 81 (107)
T ss_dssp HHSCSCC
T ss_pred HHHhccc
Confidence 9988754
No 53
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=93.23 E-value=0.25 Score=42.13 Aligned_cols=77 Identities=14% Similarity=0.173 Sum_probs=52.6
Q ss_pred CceeEEeeEEeCCCCccccccccc-hhHHHHHHhhhCCeEeecccccCCCCCCCCCCCeEEeeecccchhhHHHHHHHHH
Q 007659 100 DELIIAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVD 178 (594)
Q Consensus 100 de~~f~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGAsVtTRGrYyPPgk~~~gEpPLYL~IeG~Te~ket~eR~kaVD 178 (594)
+......+|.|..-- ++.++-| |.++++|+++|||.|.+...- ++ ....++ .+.|.|..+ .++
T Consensus 11 ~~ap~~~~i~Ip~~~--ig~IIGkgG~~Ik~I~~~tga~I~I~~~~--~~-~~~~~~--~V~I~G~~~---------~v~ 74 (104)
T 1we8_A 11 ENTPVFEQLSVPQRS--VGRIIGRGGETIRSICKASGAKITCDKES--EG-TLLLSR--LIKISGTQK---------EVA 74 (104)
T ss_dssp SSCEEEEEEEEETTT--HHHHHTTTSHHHHHHHHHHCCEEEECCSS--CC-SSSSEE--EEEEEEEHH---------HHH
T ss_pred CCCCEEEEEEEChhh--eeeeECCCCHHHHHHHHHHCCEEEEecCC--CC-CCCCcc--eEEEEcCHH---------HHH
Confidence 333346677776543 7888866 999999999999999875321 00 011234 356778653 589
Q ss_pred HHHHHHHHHHHcCC
Q 007659 179 HAAAMVEEMLKQGH 192 (594)
Q Consensus 179 rAIalIeEIIKe~P 192 (594)
+|+.+|++++.+++
T Consensus 75 ~A~~~I~~~i~e~~ 88 (104)
T 1we8_A 75 AAKHLILEKVSEDE 88 (104)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCh
Confidence 99999999987653
No 54
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=93.15 E-value=0.14 Score=43.01 Aligned_cols=72 Identities=24% Similarity=0.340 Sum_probs=50.5
Q ss_pred EEeeEEeCCCCccccccccc-hhHHHHHHhhhCCeEeecccccCCCCCCCCCCCeEEeeecccchhhHHHHHHHHHHHHH
Q 007659 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (594)
Q Consensus 104 f~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGAsVtTRGrYyPPgk~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAIa 182 (594)
+..+|.|..- .++.++-| |+++++|+++|||.|.+...-.+ ....++. +.|.|.. ..|++|+.
T Consensus 15 ~~~~i~Ip~~--~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~---~~~~~r~--v~I~G~~---------~~v~~A~~ 78 (94)
T 1x4m_A 15 AVQEIMIPAS--KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQ---NTGADKP--LRITGDP---------YKVQQAKE 78 (94)
T ss_dssp EEEEEEECHH--HHHHHSCSSSSHHHHHHHHHTSEEEECCSCCC---SSCSCEE--EEEEECT---------TTHHHHHH
T ss_pred EEEEEEEChh--hcceEECCCCHHHHHHHHHHCCeEEecCCCCC---CCCCceE--EEEEeCH---------HHHHHHHH
Confidence 3567888654 37777766 99999999999999976432110 1123454 4667844 36899999
Q ss_pred HHHHHHHcC
Q 007659 183 MVEEMLKQG 191 (594)
Q Consensus 183 lIeEIIKe~ 191 (594)
+|++++.+.
T Consensus 79 ~I~~~i~~~ 87 (94)
T 1x4m_A 79 MVLELIRDQ 87 (94)
T ss_dssp HHHHHHCCC
T ss_pred HHHHHHhcc
Confidence 999999764
No 55
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=92.89 E-value=0.16 Score=42.57 Aligned_cols=71 Identities=14% Similarity=0.258 Sum_probs=51.0
Q ss_pred EEeeEEeCCCCccccccccc-hhHHHHHHhhhCCeEeecccccCCCCCCCCCCCeEEeeecccchhhHHHHHHHHHHHHH
Q 007659 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (594)
Q Consensus 104 f~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGAsVtTRGrYyPPgk~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAIa 182 (594)
+..+|.|..- .++.++-| |.++++|+++|||.|.+...- ++..--.+.|.|.. ..|++|+.
T Consensus 15 ~~~~i~Ip~~--~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~-------~g~~~r~v~I~G~~---------e~v~~A~~ 76 (92)
T 1x4n_A 15 MTEEYKVPDG--MVGFIIGRGGEQISRIQQESGCKIQIAPDS-------GGLPERSCMLTGTP---------ESVQSAKR 76 (92)
T ss_dssp EEEEEEEEHH--HHHHHHCSSSHHHHHHHHHSCCEEEECSCC-------TTCSEEEEEEEECH---------HHHHHHHH
T ss_pred EEEEEEEChH--HcceeECCCchHHHHHHHHhCCEEEEcCCC-------CCCCccEEEEEeCH---------HHHHHHHH
Confidence 4567777554 36777765 999999999999999875421 12222345777864 47899999
Q ss_pred HHHHHHHcCC
Q 007659 183 MVEEMLKQGH 192 (594)
Q Consensus 183 lIeEIIKe~P 192 (594)
+|++++.+..
T Consensus 77 ~I~~~i~~~~ 86 (92)
T 1x4n_A 77 LLDQIVEKGR 86 (92)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhcc
Confidence 9999998753
No 56
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=92.80 E-value=0.2 Score=43.50 Aligned_cols=69 Identities=17% Similarity=0.256 Sum_probs=48.5
Q ss_pred eEEeCCCCccccccccc-hhHHHHHHhhhCCeEeecccccCCCCCCCCCCCeEEeeecccchhhHHHHHHHHHHHHHHHH
Q 007659 107 EIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVE 185 (594)
Q Consensus 107 EIEINDlPq~vRy~LTK-g~Tq~eIqe~TGAsVtTRGrYyPPgk~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAIalIe 185 (594)
+|.|..-- ++.++-| |+++++|+++|||.|.+.-. .....++ .+.|.|.. ..+++|+.+|+
T Consensus 14 ~i~Ip~~~--iG~IIGkgG~~Ik~I~~~TGakI~I~~~-----~~~~~er--~V~I~G~~---------e~v~~A~~~I~ 75 (106)
T 2hh3_A 14 DVPVPRHS--VGVVIGRSGEMIKKIQNDAGVRIQFKQD-----DGTGPEK--IAHIMGPP---------DRCEHAARIIN 75 (106)
T ss_dssp EEEEETTT--HHHHHTTTTHHHHHHHHHHTCEEEECSS-----CSSSSEE--EEEEESSH---------HHHHHHHHHHH
T ss_pred EEEECHHH--cCccCCCCcHHHHHHHHHHCcEEEEecC-----CCCCcee--EEEEEeCH---------HHHHHHHHHHH
Confidence 66675443 6777765 99999999999999987431 1111233 45777863 47899999999
Q ss_pred HHHHcCCC
Q 007659 186 EMLKQGHA 193 (594)
Q Consensus 186 EIIKe~P~ 193 (594)
+++.+...
T Consensus 76 ~ii~~~~~ 83 (106)
T 2hh3_A 76 DLLQSLRS 83 (106)
T ss_dssp HHHHHHC-
T ss_pred HHHhcccc
Confidence 99987543
No 57
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=92.69 E-value=0.096 Score=47.68 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=47.3
Q ss_pred CCCCCCCCeEEeeecccchhhHHHHHHHHHHHHHHHHHHHHcCCCCCCCccc
Q 007659 149 APPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGFPTLQT 200 (594)
Q Consensus 149 k~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAIalIeEIIKe~P~~~pt~~~ 200 (594)
.+.++.+|.|......++++|.+.|.++.+++..+|+++|+.++.+.+++++
T Consensus 70 ~RSPSPpP~Yd~~G~R~NTRE~R~r~~LE~ER~~lIe~~~k~~P~fkpP~DY 121 (124)
T 4fxw_B 70 DRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDFKPPADY 121 (124)
T ss_dssp SSCCCCCCCBCTTSCBSSCHHHHHHHHHHHHHHHHHHHGGGTCSSCCCCCC-
T ss_pred cCCCCCCCccCccccccchHHHHHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 4788999999998889999999999999999999999999999999987754
No 58
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=92.65 E-value=0.17 Score=42.00 Aligned_cols=70 Identities=14% Similarity=0.203 Sum_probs=49.9
Q ss_pred EEeeEEeCCCCccccccccc-hhHHHHHHhhhCCeEeecccccCCCCCCCCCCCeEEeeecccchhhHHHHHHHHHHHHH
Q 007659 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (594)
Q Consensus 104 f~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGAsVtTRGrYyPPgk~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAIa 182 (594)
+..+|.|..- .++.++-| |.++++|+++|||.|.+... .....++ .+.|.|.. ..+++|+.
T Consensus 14 ~~~~i~Ip~~--~vg~IIGkgG~~Ik~I~~~tga~I~I~~~-----~~~~~~~--~v~I~G~~---------e~v~~A~~ 75 (89)
T 1j5k_A 14 ITTQVTIPKD--LAGSIIGKGGQRIKQIRHESGASIKIDEP-----LEGSEDR--IITITGTQ---------DQIQNAQY 75 (89)
T ss_dssp EEEEEEEEHH--HHHHHHCGGGHHHHHHHHHTCCEEEECSC-----CSSSSEE--EEEEEEEH---------HHHHHHHH
T ss_pred EEEEEEEChh--hcceeECCCCHhHHHHHHHhCCeEEecCC-----CCCCCcc--EEEEEcCH---------HHHHHHHH
Confidence 4566777543 36777755 99999999999999987532 1112234 45678864 47899999
Q ss_pred HHHHHHHcC
Q 007659 183 MVEEMLKQG 191 (594)
Q Consensus 183 lIeEIIKe~ 191 (594)
+|++++.+.
T Consensus 76 ~I~~~i~e~ 84 (89)
T 1j5k_A 76 LLQNSVKQY 84 (89)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999998763
No 59
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=92.04 E-value=0.059 Score=56.49 Aligned_cols=73 Identities=14% Similarity=0.171 Sum_probs=49.7
Q ss_pred CcceeEEEecCCCCCCCceeeeEeCCCCCCCCccccchhhhhhcccccccc--hhHHHHHhhcCcEEEEeecCCCCCCCC
Q 007659 207 QAMSTSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQD--QYINHIMNETGATVLLRGRGSGNSEGL 284 (594)
Q Consensus 207 ~~~s~kV~Igid~~P~fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qG--s~lk~Iq~ETGaKV~LRGKGSG~~E~~ 284 (594)
...+.++.|+. .+..+|||.+ | ++|++|++||||+|.+=-.++...
T Consensus 28 ~~VTl~v~Ip~------~~Hs~IIGkg-----------------------G~~sNIkkImeEtgv~I~fPD~~~~~~--- 75 (376)
T 3n89_A 28 TRVTLNMEFES------QYYSLMTSDN-----------------------GDHENVASIMAETNTLIQLPDRSVGGT--- 75 (376)
T ss_dssp TEEEEEEECCG------GGHHHHHSCC-----------------------SSSCSHHHHHHHHTCEEECCCCCCCSS---
T ss_pred CEEEEEEEEch------hhhhhhccCC-----------------------ChHHHHHHHHHHhCCeEECCCCccccc---
Confidence 34455555542 4778899999 9 999999999999999954331110
Q ss_pred CCCCCCCC-cEEEEEeCCHHHHHHHHHHHHHH
Q 007659 285 QGEEVHQP-LHLFLSSNNPKSLEEAKRLAENL 315 (594)
Q Consensus 285 ~gqEs~EP-LHl~IS~~~pe~l~~Ak~L~EnL 315 (594)
+. .+. --+.|+| .++++++||+.+.+|
T Consensus 76 ~~---~~ks~~VtItG-~~enVE~AR~~I~~l 103 (376)
T 3n89_A 76 TP---DPFAQQVTITG-YFGDVDRARMLMRRN 103 (376)
T ss_dssp SC---CTTTTEEEEEE-EHHHHHHHHHHHHHS
T ss_pred CC---cCCCCeEEEEc-CHHHHHHHHHHHHhc
Confidence 00 111 2366665 577999999998875
No 60
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=91.92 E-value=0.37 Score=40.51 Aligned_cols=68 Identities=12% Similarity=0.160 Sum_probs=50.8
Q ss_pred EEeeEEeCCCCccccccccc-hhHHHHHHhhhCCeEeecccccCCCCCCCCCCCeEEeeecccchhhHHHHHHHHHHHHH
Q 007659 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (594)
Q Consensus 104 f~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGAsVtTRGrYyPPgk~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAIa 182 (594)
+...|.|..-- .|+++-+ |.++++|+++|||.|.+- +.. ..+. .+.|.|. . ..+++|+.
T Consensus 17 ~t~~i~Ip~~~--ig~IIG~gG~~Ik~I~~etg~~I~i~-----~~~--~~~~--~V~I~G~-~--------e~v~~A~~ 76 (94)
T 2cte_A 17 ASATVAIPKEH--HRFVIGKNGEKLQDLELKTATKIQIP-----RPD--DPSN--QIKITGT-K--------EGIEKARH 76 (94)
T ss_dssp EEEEEECCTTT--HHHHHCSSSCHHHHHHHHTTCCCBCC-----CTT--SSCC--EEEEEEC-H--------HHHHHHHH
T ss_pred eEEEEEEChHH--eeeeECCCChhHHHHHHHHCCEEEeC-----CCC--CCCC--eEEEEEC-H--------HHHHHHHH
Confidence 46788887654 7999977 799999999999998652 211 0122 5677887 3 47899999
Q ss_pred HHHHHHHcC
Q 007659 183 MVEEMLKQG 191 (594)
Q Consensus 183 lIeEIIKe~ 191 (594)
+|++++.+.
T Consensus 77 ~I~~i~~~~ 85 (94)
T 2cte_A 77 EVLLISAEQ 85 (94)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhcc
Confidence 999998764
No 61
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=91.08 E-value=0.44 Score=39.18 Aligned_cols=62 Identities=23% Similarity=0.179 Sum_probs=43.9
Q ss_pred ccccccc-hhHHHHHHhhhCCeEeecccccCCCCCCCCCCCeEEeeecccchhhHHHHHHHHHHHHHHHHHHHHcC
Q 007659 117 VRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQG 191 (594)
Q Consensus 117 vRy~LTK-g~Tq~eIqe~TGAsVtTRGrYyPPgk~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAIalIeEIIKe~ 191 (594)
++.++-+ |.++.+|+++|||.|.+... +...++..--.+.|.|.. ..++.|+.+|.+++.+.
T Consensus 14 vG~IIGkgG~~Ik~I~~~tga~I~I~~~----~~~~~g~~~r~v~I~G~~---------~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 14 VGAILGKGGKTLVEYQELTGARIQISKK----GEFLPGTRNRRVTITGSP---------AATQAAQYLISQRVTYE 76 (87)
T ss_dssp HHHHHCGGGHHHHHHHHHHCCEEEECCT----TCBSTTSCEEEEEEESSH---------HHHHHHHHHHHHHHHHH
T ss_pred cCeeECCCcHhHHHHHHHhCCEEEEccC----CCCCCCCCceEEEEEcCH---------HHHHHHHHHHHHHHhcc
Confidence 5667765 89999999999999977532 111123333456778864 47899999999998763
No 62
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=89.85 E-value=1.1 Score=38.13 Aligned_cols=69 Identities=4% Similarity=0.010 Sum_probs=49.2
Q ss_pred EEeeEEeCCCCccccccccc-hhHHHHHHhhhCCeEeecccccCCCC-CCCCCCCeEEeeecccchhhHHHHHHHHHHHH
Q 007659 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNA-PPDGEKPLYLHISAGAHLKETAERILAVDHAA 181 (594)
Q Consensus 104 f~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGAsVtTRGrYyPPgk-~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAI 181 (594)
|...|.|..-- .+.++-+ |.++.+|+++|||.|.+ ++.. ....++ .+.|.|. . ..+++|+
T Consensus 17 ~~~~i~Ip~~~--ig~IIGkgG~~Ik~I~~etg~~I~i-----~~~g~~~~~~~--~V~I~G~-~--------e~v~~A~ 78 (97)
T 2ctl_A 17 FKLSVTVDPKY--HPKIIGRKGAVITQIRLEHDVNIQF-----PDKDDGNQPQD--QITITGY-E--------KNTEAAR 78 (97)
T ss_dssp CEEEEECCTTT--HHHHSCSSSCHHHHHHHHHTCEEEC-----CCTTTCSSCSS--EEEEESC-H--------HHHHHHH
T ss_pred eeEEEEECHHH--hhhcCCCCchhHHHHHHHHCCEEEe-----cCCCCCCCCcc--EEEEEeC-H--------HHHHHHH
Confidence 45677777654 7888866 99999999999999964 2221 112333 4567786 3 4789999
Q ss_pred HHHHHHHHc
Q 007659 182 AMVEEMLKQ 190 (594)
Q Consensus 182 alIeEIIKe 190 (594)
.+|..++++
T Consensus 79 ~~I~~iv~e 87 (97)
T 2ctl_A 79 DAILRIVGE 87 (97)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998765
No 63
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=89.79 E-value=0.13 Score=46.31 Aligned_cols=60 Identities=8% Similarity=0.129 Sum_probs=44.7
Q ss_pred eeEEEecCCCCCCCceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCCCC
Q 007659 210 STSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEV 289 (594)
Q Consensus 210 s~kV~Igid~~P~fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gqEs 289 (594)
++.+.|+- .++|.+||++ |++++.|++|+| |.+-- .+
T Consensus 5 ~~~~~Vp~------~~vG~~IG~~-----------------------G~~I~~i~~e~g--I~ii~------------~~ 41 (144)
T 2qnd_A 5 HEQFIVRE------DLMGLAIGTH-----------------------GANIQQARKVPG--VTAID------------LD 41 (144)
T ss_dssp EEEEECCG------GGHHHHHCGG-----------------------GHHHHHHHTSTT--EEEEE------------EE
T ss_pred EEEEEECC------cceeeEECCC-----------------------hhHHHHHHHHHC--CeEec------------cC
Confidence 45555543 3789999999 999999999999 43321 12
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHH
Q 007659 290 HQPLHLFLSSNNPKSLEEAKRLA 312 (594)
Q Consensus 290 ~EPLHl~IS~~~pe~l~~Ak~L~ 312 (594)
++|--+.+.+..|+.+.+|+.|.
T Consensus 42 ~~~~~~i~~~~~p~~v~~~~~~l 64 (144)
T 2qnd_A 42 EDTCTFHIYGEDQDAVKKARSFL 64 (144)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHH
T ss_pred CCchheeeccCCHHHHHHHHHhh
Confidence 35667889999999999987653
No 64
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=89.54 E-value=0.72 Score=36.97 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=47.1
Q ss_pred EeeEEeCCCCccccccccc-hhHHHHHHhhhCCeEeecccccCCCCCCCCCCCeEEeeecccchhhHHHHHHHHHHHHHH
Q 007659 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAM 183 (594)
Q Consensus 105 ~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGAsVtTRGrYyPPgk~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAIal 183 (594)
.-.+.|.. ..++..+-+ |.++++|+++|||.|.+-.. + ..++- +.|.|.. ..+++|+.+
T Consensus 6 ~~~i~ip~--~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~----~---~~er~--v~I~G~~---------~~v~~A~~~ 65 (73)
T 2axy_A 6 TIRLLMHG--KEVGSIIGKKGESVKKMREESGARINISEG----N---CPERI--ITLAGPT---------NAIFKAFAM 65 (73)
T ss_dssp EEEEEEEH--HHHHHHHCGGGHHHHHHHHHHCCEEEECSS----C---CSEEE--EEEEECH---------HHHHHHHHH
T ss_pred EEEEEECh--hHeeeEECCCCHHHHHHHHHHCCEEEEecC----C---CCcEE--EEEEeCH---------HHHHHHHHH
Confidence 33555544 236777766 89999999999999976432 1 12343 4677874 478999999
Q ss_pred HHHHHHcC
Q 007659 184 VEEMLKQG 191 (594)
Q Consensus 184 IeEIIKe~ 191 (594)
|.++|.++
T Consensus 66 I~~~l~ed 73 (73)
T 2axy_A 66 IIDKLEED 73 (73)
T ss_dssp HHHHHHC-
T ss_pred HHHHHhcC
Confidence 99998763
No 65
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=89.52 E-value=0.59 Score=37.37 Aligned_cols=64 Identities=22% Similarity=0.180 Sum_probs=47.4
Q ss_pred EeeEEeCCCCccccccccc-hhHHHHHHhhhCCeEeecccccCCCCCCCCCCCeEEeeecccchhhHHHHHHHHHHHHHH
Q 007659 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAM 183 (594)
Q Consensus 105 ~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGAsVtTRGrYyPPgk~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAIal 183 (594)
..+|.|+.-- .|.++-+ |.++.+|+++|||.|.. ++. ++..=.+.|.|.. ..+++|+.+
T Consensus 6 ~~~i~I~~~~--ig~iIG~gG~~I~~I~e~tg~~I~i-----~~~----g~~~~~V~I~G~~---------~~v~~A~~~ 65 (71)
T 1vig_A 6 YVEINIDHKF--HRHLIGKSGANINRIKDQYKVSVRI-----PPD----SEKSNLIRIEGDP---------QGVQQAKRE 65 (71)
T ss_dssp EEEEEECSSH--HHHHTCSSCCHHHHHHHHTCCEEEC-----CCC----CSSSEEEEEEESS---------HHHHHHHHH
T ss_pred EEEEEECHHH--hhhhcCCCCccHHHHHHHHCCEEEE-----CCC----CCcccEEEEEcCH---------HHHHHHHHH
Confidence 5577887654 8888855 99999999999999964 221 2222356788874 478999999
Q ss_pred HHHHH
Q 007659 184 VEEML 188 (594)
Q Consensus 184 IeEII 188 (594)
|++++
T Consensus 66 I~~i~ 70 (71)
T 1vig_A 66 LLELA 70 (71)
T ss_dssp HHHTC
T ss_pred HHHHh
Confidence 98863
No 66
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=88.75 E-value=0.58 Score=40.28 Aligned_cols=67 Identities=15% Similarity=0.088 Sum_probs=48.7
Q ss_pred EEeeEEeCCCCccccccccc-hhHHHHHHhhhCCeEeecccccCCCCCCCCCCCeEEeeecccchhhHHHHHHHHHHHHH
Q 007659 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (594)
Q Consensus 104 f~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGAsVtTRGrYyPPgk~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAIa 182 (594)
+...|.|+.- ..|.++-+ |.++.+|+++|||.|.+ ++. ++..-.+.|.|.. ..+++|+.
T Consensus 17 ~~~~i~Ip~~--~ig~IIG~gG~~Ir~I~eetg~~I~I-----~~~----g~~~~~V~I~G~~---------e~v~~A~~ 76 (104)
T 2ctk_A 17 VTIEVEVPFD--LHRYVIGQKGSGIRKMMDEFEVNIHV-----PAP----ELQSDIIAITGLA---------ANLDRAKA 76 (104)
T ss_dssp EEEEEECCHH--HHHHHHCSSSHHHHHHHHHTCCEEEC-----CCT----TTTCCEEEEEECH---------HHHHHHHH
T ss_pred EEEEEEEChH--HccceeCCCchHHHHHHHHHCCEEEe-----cCC----CCCcceEEEEcCH---------HHHHHHHH
Confidence 4567777654 37888866 99999999999999964 221 1112267788875 36899999
Q ss_pred HHHHHHHc
Q 007659 183 MVEEMLKQ 190 (594)
Q Consensus 183 lIeEIIKe 190 (594)
+|+.++++
T Consensus 77 ~I~~i~~e 84 (104)
T 2ctk_A 77 GLLERVKE 84 (104)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99988764
No 67
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=88.56 E-value=0.75 Score=39.01 Aligned_cols=68 Identities=6% Similarity=0.066 Sum_probs=49.0
Q ss_pred EEeeEEeCCCCccccccccc-hhHHHHHHhhhCCeEeecccccCCCCCCCCCCCeEEeeecccchhhHHHHHHHHHHHHH
Q 007659 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (594)
Q Consensus 104 f~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGAsVtTRGrYyPPgk~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAIa 182 (594)
+..+|.|+.-- .|.++-+ |.++.+|+++|||.|.+ |+.. ....-.+.|.|.. ..+++|+.
T Consensus 17 vt~~i~Ip~~~--ig~IIG~gG~~Ir~I~e~tg~~I~i-----~~~g---~~~~~~V~I~G~~---------e~v~~A~~ 77 (95)
T 2ctm_A 17 VSEDVPLDHRV--HARIIGARGKAIRKIMDEFKVDIRF-----PQSG---APDPNCVTVTGLP---------ENVEEAID 77 (95)
T ss_dssp CCEEEECCTTT--HHHHHCSSSCHHHHHHHHHTCEEEC-----CCTT---CSCTTEEEEESCH---------HHHHHHHH
T ss_pred EEEEEEECHHH--ccccCCCCcchHHHHHHHHCCeEEe-----cCCC---CCCCcEEEEEcCH---------HHHHHHHH
Confidence 35678887654 7888855 99999999999999975 2211 1122345777864 36899999
Q ss_pred HHHHHHHc
Q 007659 183 MVEEMLKQ 190 (594)
Q Consensus 183 lIeEIIKe 190 (594)
+|+.++++
T Consensus 78 ~I~~i~~e 85 (95)
T 2ctm_A 78 HILNLEEE 85 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
No 68
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=80.36 E-value=0.84 Score=51.63 Aligned_cols=53 Identities=23% Similarity=0.471 Sum_probs=20.9
Q ss_pred eeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q 007659 225 IAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKS 304 (594)
Q Consensus 225 ~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gqEs~EPLHl~IS~~~pe~ 304 (594)
-.+.+|||+ |.++|.|..+||++|-|-..| .++|++.+.+.
T Consensus 608 ki~~vIG~g-----------------------Gk~Ik~I~~~~G~~IdI~~dG----------------~v~Is~~~~~~ 648 (757)
T 1e3p_A 608 KIGEVIGPK-----------------------RQMINQIQEDTGAEITIEDDG----------------TIYIGAADGPA 648 (757)
T ss_dssp ------------------------------------CTTCCCCCSCC------------------------CCCBSSHHH
T ss_pred Heehccccc-----------------------ceeeehhhHhhCCEEEecCCc----------------eEEEecCCHHH
Confidence 458899999 999999999999999776422 46778888888
Q ss_pred HHHHHHHHHHHH
Q 007659 305 LEEAKRLAENLL 316 (594)
Q Consensus 305 l~~Ak~L~EnLL 316 (594)
+++|++.++.|.
T Consensus 649 ~~~a~~~i~~i~ 660 (757)
T 1e3p_A 649 AEAARATINGIA 660 (757)
T ss_dssp HCC---------
T ss_pred HHHHHHHHHHhc
Confidence 888888887775
No 69
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=77.93 E-value=3.5 Score=35.05 Aligned_cols=66 Identities=12% Similarity=0.058 Sum_probs=48.4
Q ss_pred EeeEEeCCCCccccccccc-hhHHHHHHhhh-CCeEeecccccCCCCCCCCCCCeEEeeecccchhhHHHHHHHHHHHHH
Q 007659 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCT-GAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (594)
Q Consensus 105 ~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~T-GAsVtTRGrYyPPgk~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAIa 182 (594)
...|.|+.- ..|.++-+ |.++.+|+++| |+.|.. |.. +...-...|.|.. ..|++|++
T Consensus 18 t~~i~Ip~~--~i~~iIG~gGk~Ir~I~eetggv~I~i-----~~~----g~~~~~V~I~G~~---------~~v~~A~~ 77 (95)
T 2ctj_A 18 EVEVSIPAK--LHNSLIGTKGRLIRSIMEECGGVHIHF-----PVE----GSGSDTVVIRGPS---------SDVEKAKK 77 (95)
T ss_dssp CEEEECCHH--HHHHHHCSSSHHHHHHHHHHTSCEEEC-----CCT----TTTCCEEEEESCH---------HHHHHHHH
T ss_pred EEEEEECHH--HHhhhCCCCchhHHHHHHHcCCCEEEe-----CCC----CCCcceEEEEcCH---------HHHHHHHH
Confidence 456777644 37888866 79999999999 999853 332 2233356778875 37999999
Q ss_pred HHHHHHHc
Q 007659 183 MVEEMLKQ 190 (594)
Q Consensus 183 lIeEIIKe 190 (594)
+|++++.+
T Consensus 78 ~I~~iv~e 85 (95)
T 2ctj_A 78 QLLHLAEE 85 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99999875
No 70
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=77.83 E-value=0.45 Score=53.48 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=0.0
Q ss_pred eeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q 007659 225 IAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKS 304 (594)
Q Consensus 225 ~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gqEs~EPLHl~IS~~~pe~ 304 (594)
-++.+|||+ |.+++.|..+||++|-|... -.++|++.+.+.
T Consensus 570 ki~~~ig~g-----------------------Gk~I~~I~~~~G~~IdI~~d----------------g~v~I~~~~~~~ 610 (723)
T 3cdi_A 570 KIKDVIGKG-----------------------GSVIRALTEETGTTIEIEDD----------------GTVKIAATDGEK 610 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Hhccccccc-----------------------ceeeeeeehhhCceEEecCC----------------ccEEEecCCHHH
Confidence 456899999 99999999999999988743 257788888899
Q ss_pred HHHHHHHHHHHHH
Q 007659 305 LEEAKRLAENLLD 317 (594)
Q Consensus 305 l~~Ak~L~EnLL~ 317 (594)
+++|++.+++|+.
T Consensus 611 ~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 611 AKHAIRRIEEITA 623 (723)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHhh
Confidence 9999888887753
No 71
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=75.91 E-value=4.8 Score=37.47 Aligned_cols=65 Identities=11% Similarity=0.190 Sum_probs=46.5
Q ss_pred ceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHH
Q 007659 224 NIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPK 303 (594)
Q Consensus 224 N~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gqEs~EPLHl~IS~~~pe 303 (594)
.+++.|+||+ |++|++||..+++.|.|.=-.| ..---+.|-|. +.
T Consensus 65 ~lve~IFGp~-----------------------Gs~Ip~IE~~SqTLIqV~~~~s-----------~g~tEVtIfG~-~~ 109 (140)
T 3v69_A 65 RLLEIMFGKD-----------------------GEHIPHLESMLHTLIHVNVWGP-----------ERRAEIWIFGP-PP 109 (140)
T ss_dssp GGHHHHHCGG-----------------------GTTHHHHHHHHTSEEEEECCCT-----------TSCEEEEEESC-HH
T ss_pred hhhhcccCCC-----------------------cCccchHHhhcceeEEEeccCC-----------CCcEEEEEECC-HH
Confidence 4788899999 9999999999999999982111 11144666665 44
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 007659 304 SLEEAKRLAENLLDTISAEC 323 (594)
Q Consensus 304 ~l~~Ak~L~EnLL~tV~eEy 323 (594)
.=..||.++++|.+--++..
T Consensus 110 ~Q~rak~MI~sLA~~hr~~~ 129 (140)
T 3v69_A 110 FRRDVDRMLTDLAHYCRMKL 129 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44667788888777665554
No 72
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=70.45 E-value=3.7 Score=39.26 Aligned_cols=67 Identities=10% Similarity=0.032 Sum_probs=49.9
Q ss_pred CceeEEeeEEeCCC-C--------ccccccccchhHHHHHHhhhCCeEeecccccCCCCCCCCCCCeEEeeecccchhhH
Q 007659 100 DELIIAREIVINDS-E--------SSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKET 170 (594)
Q Consensus 100 de~~f~aEIEINDl-P--------q~vRy~LTKg~Tq~eIqe~TGAsVtTRGrYyPPgk~~~gEpPLYL~IeG~Te~ket 170 (594)
|++ |...|+|+|+ . ..-|.+=-.|.|+..|++.|||.|.+-|+ ..+|-|.-+
T Consensus 85 Dd~-~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~~--------------~v~i~G~~~---- 145 (191)
T 1tua_A 85 EDQ-ILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGEY--------------EVAIIGDYE---- 145 (191)
T ss_dssp TTE-EEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECSS--------------EEEEEEEHH----
T ss_pred Ccc-eeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcCC--------------EEEEEeChH----
Confidence 555 5778999987 2 22344445699999999999999998663 467778653
Q ss_pred HHHHHHHHHHHHHHHHHHHc
Q 007659 171 AERILAVDHAAAMVEEMLKQ 190 (594)
Q Consensus 171 ~eR~kaVDrAIalIeEIIKe 190 (594)
.++.|...|+.+|..
T Consensus 146 -----~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 146 -----RAMAAKQAIEMLAEG 160 (191)
T ss_dssp -----HHHHHHHHHHHHHTT
T ss_pred -----HHHHHHHHHHHHHcC
Confidence 568888889888854
No 73
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=69.75 E-value=9.5 Score=32.70 Aligned_cols=64 Identities=16% Similarity=0.167 Sum_probs=47.8
Q ss_pred EEeeEEeCCCCccccccccc-hhHHHHHHhh-hCCeEeecccccCCCCCCCCCCCeEEeeecccchhhHHHHHHHHHHHH
Q 007659 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKC-TGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAA 181 (594)
Q Consensus 104 f~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~-TGAsVtTRGrYyPPgk~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAI 181 (594)
...+|+|.--= .|+++-+ |+++.+|.+. +++.|. +|. ++. -+.|+|.. ..|++|+
T Consensus 27 ~t~~i~vp~~~--h~~IIG~~G~~Ik~i~~~~~~v~I~-----fp~-----~~~--~ItI~G~~---------~~V~~a~ 83 (102)
T 2ctf_A 27 TVSSVAAPSWL--HRFIIGKKGQNLAKITQQMPKVHIE-----FTE-----GED--KITLEGPT---------EDVSVAQ 83 (102)
T ss_dssp EEEEEECCSTT--HHHHHTTTTCHHHHHHHHCSSSEEE-----ECS-----SSC--EEEEEECH---------HHHHHHH
T ss_pred EEEEEEeCHHH--HhhhcCCCCccHHHHHHHcCCcEEE-----eCC-----CCC--EEEEECCH---------HHHHHHH
Confidence 46778887443 7888855 9999999995 587763 554 222 57889985 3799999
Q ss_pred HHHHHHHHc
Q 007659 182 AMVEEMLKQ 190 (594)
Q Consensus 182 alIeEIIKe 190 (594)
..|+.++++
T Consensus 84 ~~I~~~v~e 92 (102)
T 2ctf_A 84 EQIEGMVKD 92 (102)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998875
No 74
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=44.68 E-value=9.6 Score=32.75 Aligned_cols=62 Identities=15% Similarity=0.197 Sum_probs=45.1
Q ss_pred EEeeEEeCCCCccccccccc-hhHHHHHHhhhCCe-EeecccccCCCCCCCCCCCeEEeeecccchhhHHHHHHHHHHHH
Q 007659 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAV-VITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAA 181 (594)
Q Consensus 104 f~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGAs-VtTRGrYyPPgk~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAI 181 (594)
|...+.|+. ...|..+-+ |.++.+|+++||+. |.+-- ++. .+.|.|.+. .++++|+
T Consensus 15 ~i~~i~I~~--dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e----------ddG--~V~I~g~~~--------ea~~~A~ 72 (91)
T 2cpq_A 15 FHEEFVVRE--DLMGLAIGTHGSNIQQARKVPGVTAIELDE----------DTG--TFRIYGESA--------DAVKKAR 72 (91)
T ss_dssp EEEEEECCH--HHHHHHHTTTTHHHHHHHTSTTEEEEEEET----------TTT--EEEEEESSH--------HHHHHHH
T ss_pred eEEEEEECh--HHhhhhcCCCcHHHHHHHHHhCCeEEEEEc----------CCC--EEEEEECCH--------HHHHHHH
Confidence 566777774 347888855 99999999999997 87621 123 346678765 5789998
Q ss_pred HHHHHH
Q 007659 182 AMVEEM 187 (594)
Q Consensus 182 alIeEI 187 (594)
.+|+.+
T Consensus 73 ~~I~~i 78 (91)
T 2cpq_A 73 GFLEFV 78 (91)
T ss_dssp HHHSCC
T ss_pred HHHHhh
Confidence 888775
No 75
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=32.71 E-value=1.5e+02 Score=25.48 Aligned_cols=49 Identities=22% Similarity=0.301 Sum_probs=31.7
Q ss_pred hHHHHHhhc-CcEEEEeecCCCCCCCCCCCCCCCC-cEEEEEeCCHHHHHHHHHHHHHHHHHHHHH
Q 007659 259 YINHIMNET-GATVLLRGRGSGNSEGLQGEEVHQP-LHLFLSSNNPKSLEEAKRLAENLLDTISAE 322 (594)
Q Consensus 259 ~lk~Iq~ET-GaKV~LRGKGSG~~E~~~gqEs~EP-LHl~IS~~~pe~l~~Ak~L~EnLL~tV~eE 322 (594)
.+.-|+-+. +..|.||- || .|| ++|++.+.+.+ .|.++++.+.+.|.+.
T Consensus 46 ~idgl~~~~~~gwvlvRp--SG----------TEP~irvy~Ea~~~~---~~~~~~~~~~~~i~~~ 96 (112)
T 1wjw_A 46 AINDLVKKYTLARAFVRP--SG----------TEDIVRVYAEANSQE---SADRLAYEVSLLVFQL 96 (112)
T ss_dssp HHHHHHHHSSSEEEEEEC--SS----------SSSSEEEEEEESSHH---HHHHHHHHHHHHHHHH
T ss_pred hhhcEEEEcCCcEEEEEe--CC----------CccEEEEEEEECCHH---HHHHHHHHHHHHHHHH
Confidence 344444443 45899993 33 356 89999998865 5666677776666654
No 76
>4did_B Inositol phosphate phosphatase SOPB; small GTPase, GTP binding, hydrolase-hydrolase complex; HET: GDP; 2.35A {Salmonella enterica subsp}
Probab=29.75 E-value=35 Score=32.02 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH-hcccccccccc
Q 007659 301 NPKSLEEAKRLAENLLDTISAE-CGASRVSSCKV 333 (594)
Q Consensus 301 ~pe~l~~Ak~L~EnLL~tV~eE-y~~~r~s~~k~ 333 (594)
++..+++||+|..|||.-|..+ |.++.++.|+.
T Consensus 88 T~qE~~~aK~L~knLI~lIA~~l~~q~gls~keA 121 (152)
T 4did_B 88 TKQEEAAAKALKKNLIELIAARTQQQDGLPAKEA 121 (152)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 6889999999999999999999 89999998873
No 77
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=26.68 E-value=40 Score=37.48 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=40.4
Q ss_pred eEEeCCCCcccccccc-chhHHHHHHhhhCCeEeecccccCCCCCCCCCCCeEEeeecccchhhHHHHHHHHHHHHHHHH
Q 007659 107 EIVINDSESSVRYKLT-KRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVE 185 (594)
Q Consensus 107 EIEINDlPq~vRy~LT-Kg~Tq~eIqe~TGAsVtTRGrYyPPgk~~~gEpPLYL~IeG~Te~ket~eR~kaVDrAIalIe 185 (594)
.|.|+- .+.|-.+- .|.++++|+++||+.|.+- ++- ...|.+.+. ..+++|+..|+
T Consensus 570 ~~~I~~--~kI~~vIG~gG~~Ik~I~e~tg~~I~I~-----------d~G--~V~I~~~~~--------~~~~~A~~~I~ 626 (630)
T 3u1k_A 570 TVQVPL--SKRAKFVGPGGYNLKKLQAETGVTISQV-----------DEE--TFSVFAPTP--------SAMHEARDFIT 626 (630)
T ss_dssp EEECCH--HHHHHHHCGGGHHHHHHHHHHCCEEEEC-----------SSS--EEEEEESSH--------HHHHHHHHHTT
T ss_pred EEEeCh--hHhheeECCCChhHHHHHHHHCCEEEEc-----------CCc--EEEEEeCCH--------HHHHHHHHHHH
Confidence 455553 33566664 4999999999999999753 122 346678764 46899999998
Q ss_pred HHHH
Q 007659 186 EMLK 189 (594)
Q Consensus 186 EIIK 189 (594)
.+++
T Consensus 627 ~i~~ 630 (630)
T 3u1k_A 627 EICK 630 (630)
T ss_dssp C---
T ss_pred HHhC
Confidence 8753
No 78
>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, 11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans}
Probab=20.53 E-value=97 Score=26.70 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=24.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHHHHHHHHH
Q 007659 293 LHLFLSSNNPKSLEEAKRLAENLLDTISAE 322 (594)
Q Consensus 293 LHl~IS~~~pe~l~~Ak~L~EnLL~tV~eE 322 (594)
-||+|. .+++..++|++.+++|++.+..-
T Consensus 11 ~hIli~-~~~~~~~~a~~~A~~i~~~l~~G 39 (112)
T 3gpk_A 11 GEIFLA-ATEENKPQVFANAEKIVEQLKQG 39 (112)
T ss_dssp EEEEEE-CCGGGHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEe-CChhhHHHHHHHHHHHHHHHHCC
Confidence 499999 66788999999999999999853
No 79
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=20.48 E-value=21 Score=35.79 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=9.8
Q ss_pred hHHHHHHhhhCCeEeec
Q 007659 125 HTQEEIQKCTGAVVITR 141 (594)
Q Consensus 125 ~Tq~eIqe~TGAsVtTR 141 (594)
...++..+++|+.|...
T Consensus 22 ~~~~~F~~~~gi~V~~~ 38 (449)
T 3iot_A 22 EVGKKFEKDTGIKVTVE 38 (449)
T ss_dssp HHHHHHHHHHSCCEEEE
T ss_pred HHHHHHhhccCCEEEEE
Confidence 44555566667666543
No 80
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=20.47 E-value=89 Score=26.83 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=33.6
Q ss_pred hcCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHH-HHHHHHHHHHHH
Q 007659 266 ETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSL-EEAKRLAENLLD 317 (594)
Q Consensus 266 ETGaKV~LRGKGSG~~E~~~gqEs~EPLHl~IS~~~pe~l-~~Ak~L~EnLL~ 317 (594)
..|.+++|+|+|--.. + ..-.|+|.|.-..|+.| ++.+++.++|++
T Consensus 49 ~~G~~~rl~G~G~p~~----~--~~GDL~v~~~V~~P~~Ls~~q~~~l~~l~~ 95 (109)
T 3i38_A 49 QAGQRLRIKGKGLVSK----T--HTGDLFAVIKIVMPTKPDEKARELWQQLAA 95 (109)
T ss_dssp CTTCEEEETTCSCBCS----S--CBCCEEEEEEECCCSSCCHHHHHHHHHHHH
T ss_pred CcCeEEEECCccCCCC----C--CCcCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999997531 2 35679999988888876 445666666665
Done!