Query 007661
Match_columns 594
No_of_seqs 440 out of 3818
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 13:38:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007661.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007661hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0741 AAA+-type ATPase [Post 100.0 6E-116 1E-120 893.5 45.1 579 9-594 5-598 (744)
2 KOG0733 Nuclear AAA ATPase (VC 100.0 1.6E-77 3.5E-82 621.2 28.0 360 212-594 185-604 (802)
3 KOG0730 AAA+-type ATPase [Post 100.0 4.9E-70 1.1E-74 574.4 30.6 498 14-594 17-527 (693)
4 TIGR01243 CDC48 AAA family ATP 100.0 2.5E-64 5.4E-69 575.1 49.1 526 14-593 3-545 (733)
5 COG1222 RPT1 ATP-dependent 26S 100.0 1.8E-60 3.9E-65 470.3 28.1 286 174-488 105-394 (406)
6 KOG0730 AAA+-type ATPase [Post 100.0 2.4E-52 5.1E-57 440.7 23.9 253 209-490 426-678 (693)
7 KOG0733 Nuclear AAA ATPase (VC 100.0 1.9E-51 4.2E-56 427.1 24.7 264 211-490 505-773 (802)
8 KOG0736 Peroxisome assembly fa 100.0 2E-49 4.3E-54 421.6 23.6 263 211-490 666-936 (953)
9 KOG0727 26S proteasome regulat 100.0 5.6E-48 1.2E-52 363.1 22.4 305 144-487 89-397 (408)
10 KOG0736 Peroxisome assembly fa 100.0 3.7E-47 8.1E-52 404.3 29.0 424 128-594 306-764 (953)
11 KOG0728 26S proteasome regulat 100.0 1.7E-47 3.7E-52 359.5 22.3 286 174-488 101-390 (404)
12 KOG0726 26S proteasome regulat 100.0 1.6E-47 3.5E-52 366.6 19.4 316 132-486 98-426 (440)
13 KOG0652 26S proteasome regulat 100.0 6.7E-46 1.5E-50 350.6 22.2 248 211-487 165-413 (424)
14 KOG0729 26S proteasome regulat 100.0 5.7E-45 1.2E-49 345.2 17.6 249 211-488 171-420 (435)
15 KOG0738 AAA+-type ATPase [Post 100.0 4.2E-44 9.2E-49 355.8 21.3 262 210-491 205-474 (491)
16 COG1223 Predicted ATPase (AAA+ 100.0 6.9E-43 1.5E-47 330.3 25.2 307 124-490 49-359 (368)
17 KOG0734 AAA+-type ATPase conta 100.0 3.5E-43 7.5E-48 360.3 20.3 243 212-486 299-541 (752)
18 KOG0735 AAA+-type ATPase [Post 100.0 9E-43 2E-47 367.5 22.8 319 252-594 429-760 (952)
19 PTZ00454 26S protease regulato 100.0 7E-42 1.5E-46 360.2 29.0 287 174-489 99-389 (398)
20 COG0464 SpoVK ATPases of the A 100.0 1E-41 2.2E-46 374.1 28.8 328 238-593 2-334 (494)
21 KOG0735 AAA+-type ATPase [Post 100.0 9.5E-42 2.1E-46 359.8 21.9 233 212-462 662-894 (952)
22 PTZ00361 26 proteosome regulat 100.0 7E-40 1.5E-44 346.8 27.5 284 175-487 138-425 (438)
23 PRK03992 proteasome-activating 100.0 1.3E-39 2.8E-44 344.8 28.8 254 209-491 123-377 (389)
24 KOG0739 AAA+-type ATPase [Post 100.0 5.6E-41 1.2E-45 322.7 15.2 262 209-490 125-420 (439)
25 KOG0731 AAA+-type ATPase conta 100.0 7.6E-40 1.6E-44 356.4 21.5 246 212-486 306-553 (774)
26 TIGR01243 CDC48 AAA family ATP 100.0 6.9E-39 1.5E-43 366.1 26.8 263 211-490 447-714 (733)
27 KOG0737 AAA+-type ATPase [Post 100.0 2.2E-39 4.8E-44 322.8 19.6 258 212-489 87-362 (386)
28 COG0464 SpoVK ATPases of the A 100.0 1.3E-38 2.9E-43 349.5 25.3 253 210-490 235-487 (494)
29 KOG0651 26S proteasome regulat 100.0 5.4E-39 1.2E-43 311.2 14.5 248 211-487 126-374 (388)
30 KOG0732 AAA+-type ATPase conta 100.0 1.5E-38 3.3E-43 354.3 20.2 359 212-592 260-651 (1080)
31 COG0465 HflB ATP-dependent Zn 100.0 5.2E-38 1.1E-42 337.2 19.5 245 212-486 145-390 (596)
32 TIGR01242 26Sp45 26S proteasom 100.0 4.5E-36 9.8E-41 316.6 29.3 249 209-486 114-363 (364)
33 CHL00195 ycf46 Ycf46; Provisio 100.0 1.5E-36 3.3E-41 326.0 25.8 248 212-493 223-470 (489)
34 TIGR03689 pup_AAA proteasome A 100.0 4.8E-36 1E-40 321.4 25.9 258 211-485 176-477 (512)
35 TIGR01241 FtsH_fam ATP-depende 100.0 2.7E-35 5.8E-40 322.4 24.2 246 212-487 50-296 (495)
36 CHL00176 ftsH cell division pr 100.0 6E-34 1.3E-38 315.1 23.6 245 212-486 178-423 (638)
37 PRK10733 hflB ATP-dependent me 100.0 8.6E-32 1.9E-36 301.4 24.6 244 213-486 148-392 (644)
38 CHL00206 ycf2 Ycf2; Provisiona 100.0 3.2E-32 7E-37 315.0 21.3 212 243-488 1619-1879(2281)
39 PLN00020 ribulose bisphosphate 100.0 1.4E-31 3.1E-36 269.8 22.1 195 249-456 143-354 (413)
40 KOG0740 AAA+-type ATPase [Post 100.0 4.2E-32 9.1E-37 280.7 18.0 259 212-490 148-408 (428)
41 TIGR02639 ClpA ATP-dependent C 100.0 3.4E-28 7.4E-33 277.3 26.3 309 215-570 180-520 (731)
42 PRK11034 clpA ATP-dependent Cl 99.9 1.5E-26 3.2E-31 260.5 25.3 308 221-570 188-524 (758)
43 CHL00095 clpC Clp protease ATP 99.9 1.7E-24 3.6E-29 249.8 26.5 320 215-570 177-578 (821)
44 TIGR03345 VI_ClpV1 type VI sec 99.9 4.5E-24 9.7E-29 245.0 28.2 189 215-438 185-390 (852)
45 TIGR03346 chaperone_ClpB ATP-d 99.9 1.4E-22 2.9E-27 234.6 26.2 189 215-438 171-376 (852)
46 COG0542 clpA ATP-binding subun 99.9 8.9E-23 1.9E-27 225.1 23.1 324 221-578 172-583 (786)
47 PRK10865 protein disaggregatio 99.9 2.3E-22 5E-27 231.7 24.8 188 215-437 176-380 (857)
48 CHL00181 cbbX CbbX; Provisiona 99.9 5.4E-22 1.2E-26 201.4 21.3 235 221-480 25-280 (287)
49 TIGR02880 cbbX_cfxQ probable R 99.9 2.2E-21 4.7E-26 197.2 20.7 236 221-481 24-280 (284)
50 KOG0744 AAA+-type ATPase [Post 99.9 5.1E-22 1.1E-26 194.3 13.7 216 251-486 174-414 (423)
51 TIGR02881 spore_V_K stage V sp 99.9 1.1E-20 2.3E-25 190.5 19.3 215 221-460 8-245 (261)
52 PF00004 AAA: ATPase family as 99.8 3.6E-20 7.8E-25 166.3 14.4 131 257-398 1-132 (132)
53 KOG0742 AAA+-type ATPase [Post 99.8 1.2E-19 2.5E-24 182.4 17.6 189 252-454 382-593 (630)
54 CHL00195 ycf46 Ycf46; Provisio 99.8 6.3E-19 1.4E-23 190.1 23.3 223 323-593 82-317 (489)
55 KOG0743 AAA+-type ATPase [Post 99.8 6.2E-19 1.3E-23 181.5 16.7 204 214-443 198-410 (457)
56 COG1222 RPT1 ATP-dependent 26S 99.8 3.9E-19 8.4E-24 177.2 4.6 94 495-592 146-242 (406)
57 PF05496 RuvB_N: Holliday junc 99.7 2.3E-17 4.9E-22 157.3 15.2 189 214-449 21-225 (233)
58 TIGR00635 ruvB Holliday juncti 99.7 1.4E-15 3E-20 157.1 20.3 211 215-485 2-228 (305)
59 PRK00080 ruvB Holliday junctio 99.7 1.6E-15 3.5E-20 158.1 20.2 213 214-486 22-250 (328)
60 COG2255 RuvB Holliday junction 99.7 1.7E-15 3.8E-20 146.9 17.2 196 213-455 22-233 (332)
61 TIGR00763 lon ATP-dependent pr 99.7 9.2E-16 2E-20 176.4 17.5 234 220-484 321-584 (775)
62 TIGR02928 orc1/cdc6 family rep 99.6 3.9E-14 8.5E-19 150.1 22.0 230 212-487 10-275 (365)
63 KOG0727 26S proteasome regulat 99.6 4.4E-16 9.6E-21 147.9 6.2 95 494-592 149-246 (408)
64 COG2256 MGS1 ATPase related to 99.6 3.5E-14 7.5E-19 144.3 19.5 177 213-436 20-204 (436)
65 KOG0729 26S proteasome regulat 99.6 3.7E-16 7.9E-21 149.5 4.3 96 494-593 171-269 (435)
66 TIGR00362 DnaA chromosomal rep 99.6 4.2E-14 9.1E-19 151.7 19.7 206 212-454 105-319 (405)
67 PRK00149 dnaA chromosomal repl 99.6 4.1E-14 8.9E-19 153.7 18.8 206 212-454 117-331 (450)
68 PF02359 CDC48_N: Cell divisio 99.6 6.2E-15 1.3E-19 122.2 9.3 82 14-98 1-86 (87)
69 PRK06893 DNA replication initi 99.6 1.4E-13 3E-18 135.9 19.5 162 256-450 41-208 (229)
70 PRK00411 cdc6 cell division co 99.6 2.6E-13 5.5E-18 145.4 22.8 232 212-488 25-284 (394)
71 PTZ00112 origin recognition co 99.6 1.3E-13 2.8E-18 152.2 19.9 225 212-486 750-1006(1164)
72 PRK14962 DNA polymerase III su 99.5 4.4E-13 9.5E-18 144.9 22.0 192 213-451 10-224 (472)
73 TIGR03420 DnaA_homol_Hda DnaA 99.5 2.8E-13 6E-18 133.6 18.8 197 212-455 10-211 (226)
74 PRK14088 dnaA chromosomal repl 99.5 2.6E-13 5.5E-18 146.3 19.8 176 255-454 131-314 (440)
75 PRK14086 dnaA chromosomal repl 99.5 2.6E-13 5.5E-18 148.2 19.6 207 212-454 283-497 (617)
76 KOG0739 AAA+-type ATPase [Post 99.5 4.7E-15 1E-19 144.1 5.1 101 489-594 122-225 (439)
77 PRK14956 DNA polymerase III su 99.5 3.9E-13 8.4E-18 143.1 19.5 198 213-451 14-228 (484)
78 KOG0737 AAA+-type ATPase [Post 99.5 4.1E-15 8.9E-20 149.5 3.9 95 494-592 86-184 (386)
79 KOG0738 AAA+-type ATPase [Post 99.5 1.2E-14 2.6E-19 146.1 7.2 108 477-592 192-302 (491)
80 TIGR02902 spore_lonB ATP-depen 99.5 2.6E-13 5.6E-18 149.5 17.5 222 213-484 61-330 (531)
81 PRK07003 DNA polymerase III su 99.5 6.8E-13 1.5E-17 146.3 20.4 200 213-453 12-228 (830)
82 KOG2004 Mitochondrial ATP-depe 99.5 2.1E-13 4.5E-18 146.5 15.6 163 220-412 412-596 (906)
83 PRK12422 chromosomal replicati 99.5 5.1E-13 1.1E-17 143.6 18.8 206 212-450 106-318 (445)
84 COG0466 Lon ATP-dependent Lon 99.5 2.3E-13 4.9E-18 147.1 15.7 225 220-485 324-583 (782)
85 PRK06645 DNA polymerase III su 99.5 1.4E-12 3E-17 141.5 21.7 200 213-453 17-237 (507)
86 PRK14961 DNA polymerase III su 99.5 1.4E-12 3.1E-17 137.5 21.3 199 213-452 12-227 (363)
87 PRK12323 DNA polymerase III su 99.5 4.7E-13 1E-17 145.8 17.8 198 213-451 12-231 (700)
88 PRK08084 DNA replication initi 99.5 2E-12 4.3E-17 128.2 19.9 195 212-453 17-217 (235)
89 PRK07940 DNA polymerase III su 99.5 1.1E-12 2.4E-17 138.6 18.3 194 216-445 4-214 (394)
90 PRK14964 DNA polymerase III su 99.5 2.3E-12 5E-17 138.7 20.8 194 213-453 9-225 (491)
91 TIGR00390 hslU ATP-dependent p 99.5 1.7E-12 3.8E-17 135.0 18.8 179 221-408 14-342 (441)
92 PLN00020 ribulose bisphosphate 99.5 3.1E-14 6.7E-19 144.8 5.6 61 528-592 142-205 (413)
93 PRK14960 DNA polymerase III su 99.5 2.5E-12 5.4E-17 140.5 20.3 199 213-452 11-226 (702)
94 COG1223 Predicted ATPase (AAA+ 99.5 4.5E-14 9.7E-19 135.1 5.9 69 522-594 139-210 (368)
95 PF00308 Bac_DnaA: Bacterial d 99.5 1.6E-12 3.5E-17 127.2 16.8 206 212-452 3-215 (219)
96 PRK14958 DNA polymerase III su 99.5 1.9E-12 4.2E-17 141.3 19.1 199 213-452 12-227 (509)
97 PRK05201 hslU ATP-dependent pr 99.5 1.4E-12 3E-17 135.8 17.0 184 220-409 16-345 (443)
98 PRK07994 DNA polymerase III su 99.5 2.1E-12 4.6E-17 143.0 19.5 198 213-451 12-226 (647)
99 PRK12402 replication factor C 99.5 4.9E-12 1.1E-16 132.5 21.5 193 213-446 11-227 (337)
100 PRK05642 DNA replication initi 99.5 3.7E-12 8E-17 126.1 19.3 199 212-454 14-217 (234)
101 COG1474 CDC6 Cdc6-related prot 99.5 8.9E-12 1.9E-16 130.5 23.0 233 212-486 12-265 (366)
102 PRK08727 hypothetical protein; 99.5 5.3E-12 1.1E-16 125.0 20.2 188 212-450 14-209 (233)
103 PRK14087 dnaA chromosomal repl 99.5 2.7E-12 6E-17 138.4 19.5 181 255-455 142-329 (450)
104 PRK04195 replication factor C 99.5 3.2E-12 6.9E-17 140.0 20.0 195 213-451 10-205 (482)
105 PRK08691 DNA polymerase III su 99.4 3.1E-12 6.8E-17 141.0 19.2 199 213-452 12-227 (709)
106 PRK13342 recombination factor 99.4 6.1E-12 1.3E-16 135.2 20.9 190 214-451 9-202 (413)
107 PRK14949 DNA polymerase III su 99.4 2.7E-12 5.7E-17 144.3 18.6 198 213-451 12-226 (944)
108 PTZ00454 26S protease regulato 99.4 1.1E-13 2.5E-18 146.4 6.8 96 494-593 139-237 (398)
109 PRK10787 DNA-binding ATP-depen 99.4 3E-12 6.5E-17 146.3 18.6 229 220-485 323-581 (784)
110 KOG0731 AAA+-type ATPase conta 99.4 9.6E-14 2.1E-18 152.9 6.1 92 497-593 308-402 (774)
111 KOG0728 26S proteasome regulat 99.4 5.7E-14 1.2E-18 133.5 3.7 88 501-592 148-238 (404)
112 PRK08903 DnaA regulatory inact 99.4 8.4E-12 1.8E-16 123.2 19.2 205 212-484 13-224 (227)
113 TIGR02397 dnaX_nterm DNA polym 99.4 1.1E-11 2.4E-16 130.8 20.8 193 213-452 10-225 (355)
114 PRK14951 DNA polymerase III su 99.4 8.5E-12 1.8E-16 137.9 20.5 200 213-453 12-233 (618)
115 PRK05563 DNA polymerase III su 99.4 1.2E-11 2.5E-16 137.0 21.2 200 213-453 12-228 (559)
116 KOG2028 ATPase related to the 99.4 4.2E-12 9.2E-17 126.8 15.7 194 255-486 163-368 (554)
117 TIGR02640 gas_vesic_GvpN gas v 99.4 1.3E-11 2.8E-16 124.4 19.4 142 254-412 21-198 (262)
118 PRK14963 DNA polymerase III su 99.4 1.7E-11 3.7E-16 133.6 21.5 191 213-450 10-222 (504)
119 PRK05342 clpX ATP-dependent pr 99.4 9.6E-12 2.1E-16 132.1 18.7 230 221-458 73-383 (412)
120 PRK13341 recombination factor 99.4 1.3E-11 2.7E-16 139.5 20.5 192 213-451 24-223 (725)
121 KOG0989 Replication factor C, 99.4 8.8E-12 1.9E-16 122.6 16.4 197 213-450 32-235 (346)
122 PRK14957 DNA polymerase III su 99.4 1.8E-11 4E-16 133.7 20.7 199 213-452 12-227 (546)
123 KOG0734 AAA+-type ATPase conta 99.4 2.5E-13 5.5E-18 141.3 5.8 92 497-593 301-395 (752)
124 TIGR03689 pup_AAA proteasome A 99.4 3E-13 6.4E-18 146.1 6.2 95 494-592 176-283 (512)
125 KOG0652 26S proteasome regulat 99.4 1.3E-13 2.8E-18 131.8 2.7 89 500-592 171-262 (424)
126 PRK05896 DNA polymerase III su 99.4 1.7E-11 3.7E-16 134.0 19.5 198 213-451 12-226 (605)
127 PRK14952 DNA polymerase III su 99.4 2.4E-11 5.3E-16 133.9 20.2 199 213-452 9-226 (584)
128 PRK03992 proteasome-activating 99.4 4.9E-13 1.1E-17 142.1 6.7 94 495-592 126-222 (389)
129 PRK06620 hypothetical protein; 99.4 1.9E-11 4.1E-16 119.1 17.1 182 212-451 11-195 (214)
130 PRK14965 DNA polymerase III su 99.4 2.2E-11 4.9E-16 135.4 19.6 200 213-453 12-228 (576)
131 PLN03025 replication factor C 99.4 3.3E-11 7.2E-16 125.1 19.5 190 213-447 9-202 (319)
132 PRK14959 DNA polymerase III su 99.4 2.5E-11 5.4E-16 133.4 19.4 190 213-449 12-224 (624)
133 COG0593 DnaA ATPase involved i 99.4 3.2E-11 6.9E-16 126.0 19.2 209 212-456 82-297 (408)
134 KOG1051 Chaperone HSP104 and r 99.4 3.9E-11 8.4E-16 135.3 21.0 161 221-414 189-365 (898)
135 PRK14969 DNA polymerase III su 99.4 2.2E-11 4.8E-16 133.9 18.8 198 214-452 13-227 (527)
136 PF05673 DUF815: Protein of un 99.4 5.3E-11 1.1E-15 115.4 19.0 165 212-416 22-211 (249)
137 PRK14970 DNA polymerase III su 99.4 8E-11 1.7E-15 124.8 22.0 196 213-453 13-217 (367)
138 PRK07133 DNA polymerase III su 99.3 4E-11 8.6E-16 133.7 20.0 199 213-452 14-226 (725)
139 PRK07764 DNA polymerase III su 99.3 3.7E-11 8.1E-16 137.3 19.9 197 213-450 11-226 (824)
140 PHA02544 44 clamp loader, smal 99.3 4.9E-11 1.1E-15 123.8 18.5 181 213-436 17-201 (316)
141 KOG0726 26S proteasome regulat 99.3 3E-13 6.6E-18 131.2 1.5 88 500-591 185-275 (440)
142 TIGR00382 clpX endopeptidase C 99.3 5E-11 1.1E-15 125.9 18.0 230 220-457 78-388 (413)
143 PRK06647 DNA polymerase III su 99.3 9.6E-11 2.1E-15 129.3 20.4 199 213-452 12-227 (563)
144 PTZ00361 26 proteosome regulat 99.3 2.6E-12 5.7E-17 136.9 7.2 93 496-592 179-274 (438)
145 KOG0651 26S proteasome regulat 99.3 8.6E-13 1.9E-17 129.5 3.2 88 501-592 133-223 (388)
146 KOG0741 AAA+-type ATPase [Post 99.3 1.1E-12 2.5E-17 136.4 4.2 87 498-591 219-313 (744)
147 PRK14953 DNA polymerase III su 99.3 1.1E-10 2.4E-15 126.9 19.6 199 213-452 12-227 (486)
148 TIGR02903 spore_lon_C ATP-depe 99.3 9.4E-11 2E-15 131.3 18.8 232 213-486 150-430 (615)
149 PRK09111 DNA polymerase III su 99.3 1.9E-10 4.2E-15 127.5 20.6 198 214-452 21-240 (598)
150 PRK13407 bchI magnesium chelat 99.3 4.3E-11 9.3E-16 123.6 14.4 170 212-412 3-216 (334)
151 PRK08451 DNA polymerase III su 99.3 1.7E-10 3.7E-15 125.5 19.5 200 213-453 10-226 (535)
152 PRK14954 DNA polymerase III su 99.3 2.4E-10 5.3E-15 126.9 21.1 200 213-453 12-236 (620)
153 TIGR01650 PD_CobS cobaltochela 99.3 8.4E-12 1.8E-16 127.0 8.2 139 253-413 63-234 (327)
154 PRK14955 DNA polymerase III su 99.3 1.7E-10 3.6E-15 123.3 18.5 200 213-453 12-236 (397)
155 PRK06305 DNA polymerase III su 99.3 2.9E-10 6.2E-15 122.9 19.8 197 213-450 13-227 (451)
156 PRK14948 DNA polymerase III su 99.2 3.1E-10 6.7E-15 126.7 20.0 195 213-448 12-225 (620)
157 KOG0740 AAA+-type ATPase [Post 99.2 3.9E-12 8.3E-17 132.7 3.8 96 494-594 147-245 (428)
158 TIGR01241 FtsH_fam ATP-depende 99.2 8E-12 1.7E-16 137.4 6.3 94 495-593 50-146 (495)
159 PRK09087 hypothetical protein; 99.2 2E-10 4.3E-15 112.9 15.5 204 212-486 16-222 (226)
160 COG2812 DnaX DNA polymerase II 99.2 1.4E-10 3.1E-15 124.6 15.5 200 213-453 12-228 (515)
161 PRK00440 rfc replication facto 99.2 8.3E-10 1.8E-14 114.6 20.6 191 214-450 14-208 (319)
162 TIGR02639 ClpA ATP-dependent C 99.2 3.3E-10 7.2E-15 130.0 18.0 202 220-456 455-714 (731)
163 PRK11034 clpA ATP-dependent Cl 99.2 4E-10 8.6E-15 128.1 18.0 203 221-456 460-718 (758)
164 PRK14950 DNA polymerase III su 99.2 9.7E-10 2.1E-14 122.9 20.7 197 213-450 12-226 (585)
165 TIGR01242 26Sp45 26S proteasom 99.2 1.5E-11 3.2E-16 130.1 5.8 94 495-592 117-213 (364)
166 TIGR02030 BchI-ChlI magnesium 99.2 3.1E-10 6.8E-15 117.5 15.0 167 214-411 1-218 (337)
167 cd00009 AAA The AAA+ (ATPases 99.2 4E-10 8.7E-15 101.9 14.1 122 253-397 18-150 (151)
168 CHL00081 chlI Mg-protoporyphyr 99.2 6.6E-10 1.4E-14 115.0 17.0 169 212-411 12-231 (350)
169 CHL00206 ycf2 Ycf2; Provisiona 99.2 2.1E-11 4.5E-16 144.0 5.8 45 527-571 1623-1667(2281)
170 COG1220 HslU ATP-dependent pro 99.2 5E-10 1.1E-14 111.4 14.6 81 325-409 253-346 (444)
171 TIGR00678 holB DNA polymerase 99.1 1.4E-09 2.9E-14 104.2 15.3 153 253-436 13-183 (188)
172 TIGR03345 VI_ClpV1 type VI sec 99.1 1.6E-09 3.4E-14 125.5 18.4 202 220-456 567-833 (852)
173 KOG0732 AAA+-type ATPase conta 99.1 4E-11 8.8E-16 135.8 4.9 95 496-594 261-363 (1080)
174 PRK11331 5-methylcytosine-spec 99.1 6.4E-10 1.4E-14 117.5 13.2 141 221-398 177-357 (459)
175 PRK14971 DNA polymerase III su 99.1 4.9E-09 1.1E-13 117.2 20.3 200 213-453 13-230 (614)
176 KOG1969 DNA replication checkp 99.1 1.8E-09 3.9E-14 117.0 16.1 174 252-455 324-517 (877)
177 TIGR02442 Cob-chelat-sub cobal 99.1 1.5E-09 3.2E-14 122.5 16.1 165 214-411 1-213 (633)
178 TIGR03015 pepcterm_ATPase puta 99.1 1.6E-09 3.4E-14 109.8 14.9 199 256-487 45-267 (269)
179 TIGR03346 chaperone_ClpB ATP-d 99.1 2.4E-09 5.1E-14 124.8 18.0 203 221-457 567-829 (852)
180 PHA02244 ATPase-like protein 99.1 2.2E-09 4.9E-14 110.5 15.0 129 253-408 118-269 (383)
181 COG0465 HflB ATP-dependent Zn 99.1 1E-10 2.2E-15 127.1 5.3 89 500-593 150-241 (596)
182 CHL00176 ftsH cell division pr 99.1 1.6E-10 3.5E-15 129.0 6.2 92 497-593 180-274 (638)
183 PF07728 AAA_5: AAA domain (dy 99.0 1.3E-10 2.7E-15 105.6 4.1 109 256-390 1-139 (139)
184 smart00382 AAA ATPases associa 99.0 1.9E-09 4.1E-14 96.6 11.6 127 254-399 2-147 (148)
185 COG1224 TIP49 DNA helicase TIP 99.0 7.2E-09 1.6E-13 104.0 15.5 130 322-486 291-432 (450)
186 TIGR00764 lon_rel lon-related 99.0 8.2E-09 1.8E-13 115.4 17.5 103 367-484 268-389 (608)
187 PRK09112 DNA polymerase III su 99.0 2.1E-08 4.6E-13 104.8 19.2 185 213-439 19-235 (351)
188 PRK05564 DNA polymerase III su 99.0 1.1E-08 2.4E-13 106.0 16.7 180 215-439 2-185 (313)
189 PRK10865 protein disaggregatio 99.0 1.2E-08 2.7E-13 118.4 18.9 202 221-456 570-831 (857)
190 PF00004 AAA: ATPase family as 99.0 3.2E-10 7E-15 101.4 4.5 53 537-593 1-56 (132)
191 COG5271 MDN1 AAA ATPase contai 99.0 1.3E-08 2.9E-13 116.9 17.9 134 253-413 1542-1704(4600)
192 CHL00095 clpC Clp protease ATP 99.0 1.6E-08 3.4E-13 117.6 19.1 201 221-455 511-783 (821)
193 COG3829 RocR Transcriptional r 99.0 3.2E-09 6.9E-14 112.7 12.1 201 212-453 240-479 (560)
194 PRK07471 DNA polymerase III su 99.0 1.4E-08 3.1E-13 106.6 17.0 183 213-439 15-233 (365)
195 COG2607 Predicted ATPase (AAA+ 99.0 5.7E-08 1.2E-12 92.9 18.6 165 212-416 55-243 (287)
196 PF07724 AAA_2: AAA domain (Cd 99.0 2.8E-09 6.1E-14 100.1 9.7 119 253-379 2-132 (171)
197 PRK07399 DNA polymerase III su 99.0 2.2E-08 4.8E-13 103.2 17.0 184 215-442 2-219 (314)
198 COG0542 clpA ATP-binding subun 98.9 7.6E-09 1.6E-13 115.6 13.9 198 220-451 492-752 (786)
199 smart00350 MCM minichromosome 98.9 1.2E-08 2.7E-13 112.3 15.3 165 221-413 205-401 (509)
200 PRK05707 DNA polymerase III su 98.9 1.5E-08 3.3E-13 104.9 15.0 159 252-439 20-198 (328)
201 TIGR02974 phageshock_pspF psp 98.9 9.7E-09 2.1E-13 106.7 13.4 174 253-453 21-233 (329)
202 COG0714 MoxR-like ATPases [Gen 98.9 4.6E-09 1E-13 109.6 11.0 139 253-411 42-202 (329)
203 PRK11608 pspF phage shock prot 98.9 1.1E-08 2.4E-13 106.4 13.6 195 221-453 8-240 (326)
204 COG1219 ClpX ATP-dependent pro 98.9 3.8E-08 8.2E-13 97.5 16.4 103 255-362 98-203 (408)
205 COG1221 PspF Transcriptional r 98.9 9.4E-09 2E-13 107.3 12.1 202 214-456 75-312 (403)
206 COG1239 ChlI Mg-chelatase subu 98.9 1.2E-08 2.5E-13 105.6 12.6 170 212-413 12-233 (423)
207 TIGR02031 BchD-ChlD magnesium 98.9 2.3E-08 4.9E-13 111.7 15.4 138 255-412 17-174 (589)
208 TIGR01817 nifA Nif-specific re 98.9 2E-08 4.4E-13 111.7 14.8 206 213-453 192-428 (534)
209 PRK05022 anaerobic nitric oxid 98.9 1.9E-08 4.1E-13 111.1 14.4 200 215-455 185-422 (509)
210 PF01078 Mg_chelatase: Magnesi 98.9 2E-09 4.4E-14 102.5 5.6 46 216-279 2-47 (206)
211 PF05621 TniB: Bacterial TniB 98.9 5.4E-08 1.2E-12 97.6 16.0 192 252-481 59-284 (302)
212 PRK15429 formate hydrogenlyase 98.9 3.6E-08 7.7E-13 112.9 16.7 200 213-454 372-610 (686)
213 TIGR02881 spore_V_K stage V sp 98.9 2.7E-09 5.9E-14 107.6 6.7 86 501-591 7-105 (261)
214 KOG1514 Origin recognition com 98.9 1E-07 2.3E-12 103.4 19.0 205 256-489 424-658 (767)
215 PRK13531 regulatory ATPase Rav 98.9 1.5E-08 3.4E-13 108.0 12.6 156 220-411 21-193 (498)
216 PRK10820 DNA-binding transcrip 98.9 1.9E-08 4.2E-13 111.1 13.4 201 212-453 199-437 (520)
217 PRK11388 DNA-binding transcrip 98.9 1.1E-08 2.4E-13 116.2 11.6 205 213-453 321-554 (638)
218 PRK08058 DNA polymerase III su 98.8 6.9E-08 1.5E-12 100.6 15.8 158 216-409 4-179 (329)
219 TIGR02329 propionate_PrpR prop 98.8 4.2E-08 9E-13 107.7 14.6 200 213-453 208-450 (526)
220 PRK15424 propionate catabolism 98.8 2.7E-08 5.8E-13 109.1 13.0 199 214-453 216-465 (538)
221 COG5271 MDN1 AAA ATPase contai 98.8 3.5E-08 7.5E-13 113.6 13.9 135 254-412 888-1047(4600)
222 PRK04132 replication factor C 98.8 9.2E-08 2E-12 109.1 17.4 164 257-450 567-736 (846)
223 TIGR00368 Mg chelatase-related 98.8 5.8E-08 1.3E-12 105.8 15.1 47 214-278 189-235 (499)
224 PF00158 Sigma54_activat: Sigm 98.8 1.5E-08 3.3E-13 94.8 8.8 112 253-391 21-155 (168)
225 TIGR02880 cbbX_cfxQ probable R 98.8 5.2E-09 1.1E-13 106.6 6.1 86 502-592 24-122 (284)
226 PRK08116 hypothetical protein; 98.8 1.7E-08 3.6E-13 101.9 9.7 133 253-411 113-259 (268)
227 COG0470 HolB ATPase involved i 98.8 1.2E-07 2.6E-12 98.6 16.0 130 256-409 26-178 (325)
228 TIGR00602 rad24 checkpoint pro 98.8 2.3E-07 4.9E-12 103.3 18.8 209 213-451 80-326 (637)
229 PF06068 TIP49: TIP49 C-termin 98.8 8.3E-08 1.8E-12 98.1 13.9 65 220-293 25-90 (398)
230 KOG2227 Pre-initiation complex 98.8 2.6E-07 5.7E-12 96.2 17.5 236 220-486 151-415 (529)
231 PRK06964 DNA polymerase III su 98.8 7.3E-08 1.6E-12 99.9 12.7 138 252-411 19-203 (342)
232 PF05496 RuvB_N: Holliday junc 98.7 2.1E-08 4.6E-13 96.2 7.7 56 513-569 30-85 (233)
233 COG3604 FhlA Transcriptional r 98.7 9.5E-08 2.1E-12 100.3 12.7 209 220-458 224-460 (550)
234 TIGR00390 hslU ATP-dependent p 98.7 9.5E-09 2.1E-13 107.4 5.3 55 533-591 46-105 (441)
235 COG2204 AtoC Response regulato 98.7 6.7E-08 1.5E-12 102.8 11.8 198 221-457 143-378 (464)
236 PF06068 TIP49: TIP49 C-termin 98.7 3.9E-08 8.4E-13 100.5 9.0 60 529-590 45-106 (398)
237 CHL00181 cbbX CbbX; Provisiona 98.7 1.5E-08 3.2E-13 103.3 5.7 86 502-592 25-123 (287)
238 PRK06871 DNA polymerase III su 98.7 3E-07 6.5E-12 94.8 15.3 136 254-411 24-178 (325)
239 PF07726 AAA_3: ATPase family 98.7 4E-08 8.6E-13 86.1 7.4 109 256-390 1-129 (131)
240 PRK09862 putative ATP-dependen 98.7 3.1E-07 6.7E-12 99.7 15.7 125 252-402 208-391 (506)
241 COG1224 TIP49 DNA helicase TIP 98.7 1.7E-08 3.6E-13 101.4 5.2 61 528-590 59-121 (450)
242 PF12775 AAA_7: P-loop contain 98.7 1.1E-07 2.4E-12 96.0 10.7 148 252-415 31-196 (272)
243 PRK10733 hflB ATP-dependent me 98.7 2.3E-08 4.9E-13 113.0 6.3 66 524-593 175-243 (644)
244 PRK08769 DNA polymerase III su 98.7 3.4E-07 7.3E-12 94.2 14.2 159 253-442 25-206 (319)
245 PF01637 Arch_ATPase: Archaeal 98.7 1.9E-07 4.2E-12 91.7 12.1 184 222-439 2-229 (234)
246 PRK07993 DNA polymerase III su 98.6 4.3E-07 9.4E-12 94.4 14.6 159 252-440 22-200 (334)
247 PF13177 DNA_pol3_delta2: DNA 98.6 2.8E-07 6E-12 85.9 11.8 141 223-398 1-160 (162)
248 KOG0745 Putative ATP-dependent 98.6 1.6E-07 3.4E-12 96.7 10.6 102 255-361 227-331 (564)
249 KOG0991 Replication factor C, 98.6 3.7E-07 7.9E-12 86.9 12.0 135 214-386 24-162 (333)
250 smart00763 AAA_PrkA PrkA AAA d 98.6 1.5E-06 3.3E-11 89.8 17.1 52 220-280 52-104 (361)
251 PRK08181 transposase; Validate 98.6 1.1E-07 2.4E-12 95.6 8.0 102 253-377 105-209 (269)
252 PRK05201 hslU ATP-dependent pr 98.6 4.9E-08 1.1E-12 102.2 5.5 54 534-591 50-108 (443)
253 PRK12377 putative replication 98.6 1.7E-07 3.7E-12 93.1 8.6 102 254-377 101-206 (248)
254 PRK08699 DNA polymerase III su 98.6 6.4E-07 1.4E-11 92.8 12.9 137 252-410 19-183 (325)
255 TIGR02915 PEP_resp_reg putativ 98.6 2.9E-07 6.2E-12 100.3 10.6 180 253-454 161-373 (445)
256 PRK06526 transposase; Provisio 98.5 1.3E-07 2.9E-12 94.5 6.9 102 253-377 97-201 (254)
257 PRK07952 DNA replication prote 98.5 2.2E-07 4.7E-12 92.1 8.3 101 255-377 100-205 (244)
258 KOG1942 DNA helicase, TBP-inte 98.5 1.9E-06 4.2E-11 84.6 14.5 110 322-453 296-418 (456)
259 PF13173 AAA_14: AAA domain 98.5 9.7E-07 2.1E-11 78.9 10.8 119 255-403 3-126 (128)
260 PRK06090 DNA polymerase III su 98.5 2.4E-06 5.2E-11 87.9 15.0 136 253-410 24-178 (319)
261 PTZ00111 DNA replication licen 98.5 2.3E-06 5E-11 97.5 16.1 163 221-407 452-652 (915)
262 PRK11361 acetoacetate metaboli 98.5 5.9E-07 1.3E-11 98.2 11.0 178 254-453 166-376 (457)
263 COG2256 MGS1 ATPase related to 98.5 1.4E-07 3.1E-12 96.7 5.4 53 532-592 46-98 (436)
264 PRK13765 ATP-dependent proteas 98.5 1.6E-06 3.5E-11 96.9 13.2 51 212-280 26-76 (637)
265 PRK09183 transposase/IS protei 98.4 4.1E-07 8.9E-12 91.4 7.7 75 252-335 100-177 (259)
266 KOG0742 AAA+-type ATPase [Post 98.4 1.4E-07 3E-12 96.3 4.0 64 528-594 378-442 (630)
267 PRK08939 primosomal protein Dn 98.4 5.1E-07 1.1E-11 92.7 8.3 102 253-377 155-261 (306)
268 PF13401 AAA_22: AAA domain; P 98.4 1.3E-06 2.7E-11 78.1 9.4 88 253-360 3-113 (131)
269 PF01695 IstB_IS21: IstB-like 98.4 2.5E-07 5.4E-12 87.5 4.9 73 252-334 45-120 (178)
270 PRK05342 clpX ATP-dependent pr 98.4 4.8E-07 1E-11 96.4 7.5 54 533-589 107-164 (412)
271 PRK06921 hypothetical protein; 98.4 2.6E-06 5.7E-11 85.9 12.3 41 253-293 116-159 (266)
272 PRK10923 glnG nitrogen regulat 98.4 3.6E-06 7.8E-11 92.4 13.3 200 221-453 140-371 (469)
273 COG1484 DnaC DNA replication p 98.4 9.7E-07 2.1E-11 88.3 8.0 102 253-377 104-209 (254)
274 KOG0744 AAA+-type ATPase [Post 98.4 3E-07 6.6E-12 91.4 4.2 52 535-590 178-241 (423)
275 TIGR01818 ntrC nitrogen regula 98.4 4.5E-06 9.8E-11 91.4 13.9 201 221-454 136-368 (463)
276 PRK06835 DNA replication prote 98.4 8.9E-07 1.9E-11 91.7 7.8 72 254-335 183-259 (329)
277 TIGR02655 circ_KaiC circadian 98.3 1.3E-06 2.8E-11 95.8 9.0 43 527-569 256-301 (484)
278 KOG0743 AAA+-type ATPase [Post 98.3 6.7E-07 1.4E-11 93.3 6.3 74 512-592 210-286 (457)
279 PF14532 Sigma54_activ_2: Sigm 98.3 9.2E-07 2E-11 80.1 6.5 88 253-376 20-109 (138)
280 PF05729 NACHT: NACHT domain 98.3 4.4E-06 9.5E-11 77.5 11.1 141 256-413 2-164 (166)
281 KOG2680 DNA helicase TIP49, TB 98.3 1.2E-05 2.7E-10 79.3 14.4 130 322-486 288-429 (454)
282 TIGR00763 lon ATP-dependent pr 98.3 1.4E-06 3.1E-11 100.9 9.4 54 535-592 348-413 (775)
283 PRK15115 response regulator Gl 98.3 2.1E-06 4.6E-11 93.5 10.1 178 254-453 157-367 (444)
284 COG3283 TyrR Transcriptional r 98.3 1E-05 2.2E-10 81.8 13.4 206 212-456 199-435 (511)
285 COG2255 RuvB Holliday junction 98.3 1.2E-06 2.7E-11 86.0 6.8 57 513-570 32-88 (332)
286 KOG2035 Replication factor C, 98.3 1.5E-05 3.3E-10 78.0 14.0 161 255-436 35-220 (351)
287 PF03969 AFG1_ATPase: AFG1-lik 98.3 6.7E-07 1.5E-11 93.7 5.1 103 251-377 59-168 (362)
288 TIGR00382 clpX endopeptidase C 98.3 1.8E-06 3.9E-11 91.7 8.3 54 534-590 116-173 (413)
289 COG3267 ExeA Type II secretory 98.3 1.9E-05 4.1E-10 76.9 14.4 182 256-455 53-255 (269)
290 COG0606 Predicted ATPase with 98.3 6.5E-07 1.4E-11 94.2 4.2 47 214-278 176-222 (490)
291 KOG2228 Origin recognition com 98.3 9.2E-06 2E-10 81.6 11.8 166 221-412 26-219 (408)
292 PF03215 Rad17: Rad17 cell cyc 98.2 3.8E-05 8.3E-10 84.2 17.7 212 215-454 17-269 (519)
293 PF12774 AAA_6: Hydrolytic ATP 98.2 8.9E-06 1.9E-10 80.0 11.6 127 253-408 31-176 (231)
294 PRK06851 hypothetical protein; 98.2 6.2E-06 1.4E-10 86.0 10.6 31 535-565 215-248 (367)
295 KOG1051 Chaperone HSP104 and r 98.2 9E-06 2E-10 92.6 12.7 128 221-377 564-711 (898)
296 PRK10365 transcriptional regul 98.2 4.3E-06 9.3E-11 91.0 9.0 179 253-453 161-372 (441)
297 PF07724 AAA_2: AAA domain (Cd 98.2 1.6E-06 3.5E-11 81.4 4.4 40 532-571 1-44 (171)
298 KOG0990 Replication factor C, 98.1 6.3E-06 1.4E-10 82.3 8.1 138 256-415 64-206 (360)
299 COG1219 ClpX ATP-dependent pro 98.1 2.5E-06 5.3E-11 84.9 5.0 53 535-590 98-154 (408)
300 PF00931 NB-ARC: NB-ARC domain 98.1 6.1E-05 1.3E-09 76.8 15.1 158 252-439 17-197 (287)
301 PF02933 CDC48_2: Cell divisio 98.1 1E-05 2.2E-10 62.8 7.0 59 123-190 2-60 (64)
302 KOG3595 Dyneins, heavy chain [ 98.1 5.9E-05 1.3E-09 92.4 17.0 307 255-590 128-518 (1395)
303 PRK13406 bchD magnesium chelat 98.1 2.2E-05 4.7E-10 87.3 11.9 199 255-486 26-250 (584)
304 PF07728 AAA_5: AAA domain (dy 98.1 3E-06 6.6E-11 76.7 4.2 36 536-571 1-36 (139)
305 smart00763 AAA_PrkA PrkA AAA d 98.1 1.2E-05 2.5E-10 83.3 8.7 56 532-591 76-145 (361)
306 KOG2028 ATPase related to the 98.1 4.9E-06 1.1E-10 84.1 5.6 50 535-592 163-215 (554)
307 PRK00080 ruvB Holliday junctio 98.1 7.1E-06 1.5E-10 85.7 7.1 40 531-570 48-87 (328)
308 KOG1942 DNA helicase, TBP-inte 98.1 3.5E-06 7.6E-11 82.7 4.3 60 530-591 60-121 (456)
309 PF07726 AAA_3: ATPase family 98.1 2.6E-06 5.6E-11 74.8 2.9 36 536-571 1-37 (131)
310 COG1485 Predicted ATPase [Gene 98.1 9.9E-06 2.2E-10 82.3 7.5 131 250-416 61-200 (367)
311 COG1618 Predicted nucleotide k 98.0 5E-05 1.1E-09 68.8 11.0 29 252-280 3-31 (179)
312 COG5245 DYN1 Dynein, heavy cha 98.0 7.1E-05 1.5E-09 87.0 14.6 151 250-415 1490-1661(3164)
313 COG3284 AcoR Transcriptional a 98.0 2.1E-05 4.5E-10 85.6 10.0 193 222-454 316-541 (606)
314 PRK09302 circadian clock prote 98.0 1.4E-05 3.1E-10 88.5 9.1 39 529-567 268-309 (509)
315 COG1220 HslU ATP-dependent pro 98.0 8E-06 1.7E-10 81.9 5.9 58 533-590 49-107 (444)
316 PHA00729 NTP-binding motif con 98.0 2E-05 4.4E-10 76.6 8.4 24 255-278 18-41 (226)
317 smart00382 AAA ATPases associa 98.0 9.4E-06 2E-10 72.3 5.6 60 534-593 2-77 (148)
318 PF00910 RNA_helicase: RNA hel 98.0 1.7E-05 3.7E-10 68.4 6.8 23 257-279 1-23 (107)
319 TIGR01650 PD_CobS cobaltochela 98.0 6.7E-06 1.5E-10 84.2 4.6 42 534-575 64-110 (327)
320 PRK05917 DNA polymerase III su 98.0 5.6E-05 1.2E-09 76.4 10.9 125 253-399 18-154 (290)
321 cd01120 RecA-like_NTPases RecA 98.0 2.2E-05 4.7E-10 72.4 7.5 33 257-289 2-36 (165)
322 TIGR02640 gas_vesic_GvpN gas v 98.0 1.3E-05 2.8E-10 80.8 6.4 36 535-570 22-57 (262)
323 PRK04195 replication factor C 98.0 1.5E-05 3.2E-10 87.6 7.3 38 532-569 37-74 (482)
324 TIGR02237 recomb_radB DNA repa 97.9 4.4E-05 9.6E-10 74.2 9.6 41 250-290 8-50 (209)
325 TIGR00635 ruvB Holliday juncti 97.9 1.7E-05 3.8E-10 81.8 7.2 38 532-569 28-65 (305)
326 PF13207 AAA_17: AAA domain; P 97.9 7.5E-06 1.6E-10 72.1 3.4 31 537-567 2-32 (121)
327 KOG2383 Predicted ATPase [Gene 97.9 4.1E-05 8.9E-10 78.7 9.1 161 251-450 111-297 (467)
328 PF13191 AAA_16: AAA ATPase do 97.9 5.9E-05 1.3E-09 71.4 9.4 48 221-279 2-49 (185)
329 PLN03210 Resistant to P. syrin 97.9 0.00024 5.3E-09 86.3 16.3 181 213-439 180-390 (1153)
330 PRK05818 DNA polymerase III su 97.9 0.00012 2.5E-09 72.7 10.9 127 252-399 5-147 (261)
331 PRK13342 recombination factor 97.9 2E-05 4.3E-10 85.0 6.0 50 534-591 36-85 (413)
332 COG0466 Lon ATP-dependent Lon 97.8 5.9E-05 1.3E-09 82.9 9.5 56 512-567 328-383 (782)
333 COG4619 ABC-type uncharacteriz 97.8 0.00012 2.6E-09 66.8 9.8 30 249-278 24-53 (223)
334 PHA02244 ATPase-like protein 97.8 5.7E-05 1.2E-09 78.3 8.6 33 535-567 120-152 (383)
335 TIGR01618 phage_P_loop phage n 97.8 5.1E-05 1.1E-09 73.8 7.5 23 254-276 12-34 (220)
336 PF07693 KAP_NTPase: KAP famil 97.8 0.00094 2E-08 69.4 17.4 82 321-416 171-267 (325)
337 PRK00131 aroK shikimate kinase 97.8 2E-05 4.4E-10 73.9 4.2 34 533-566 3-36 (175)
338 PRK10787 DNA-binding ATP-depen 97.8 0.00019 4E-09 82.9 12.5 57 513-569 328-384 (784)
339 TIGR02012 tigrfam_recA protein 97.8 0.00017 3.6E-09 74.2 10.8 118 250-375 51-190 (321)
340 PRK09361 radB DNA repair and r 97.7 0.00014 3.1E-09 71.5 9.5 40 250-289 19-60 (225)
341 PRK12377 putative replication 97.7 6.4E-05 1.4E-09 74.8 6.7 56 512-571 83-141 (248)
342 cd00009 AAA The AAA+ (ATPases 97.7 3.4E-05 7.4E-10 69.3 4.4 39 533-571 18-59 (151)
343 PRK14962 DNA polymerase III su 97.7 4.3E-05 9.3E-10 83.1 5.8 29 532-560 34-62 (472)
344 PRK07132 DNA polymerase III su 97.7 0.00037 8E-09 71.3 12.2 135 255-410 19-160 (299)
345 COG1123 ATPase components of v 97.7 4.6E-05 1E-09 82.5 5.7 40 530-569 313-354 (539)
346 PRK08118 topology modulation p 97.7 2.9E-05 6.3E-10 72.7 3.7 31 536-566 3-33 (167)
347 COG1116 TauB ABC-type nitrate/ 97.7 0.00012 2.7E-09 71.4 8.0 28 251-278 26-53 (248)
348 cd01121 Sms Sms (bacterial rad 97.7 0.00013 2.9E-09 76.9 8.6 80 250-337 78-173 (372)
349 PRK08533 flagellar accessory p 97.7 0.00034 7.4E-09 69.1 11.1 39 250-288 20-60 (230)
350 PRK07276 DNA polymerase III su 97.7 0.00073 1.6E-08 68.6 13.5 132 253-409 23-172 (290)
351 PRK08116 hypothetical protein; 97.7 7.6E-05 1.6E-09 75.4 6.4 58 513-571 94-154 (268)
352 cd01394 radB RadB. The archaea 97.6 0.00021 4.7E-09 69.9 9.2 40 250-289 15-56 (218)
353 cd01128 rho_factor Transcripti 97.6 0.00027 5.8E-09 70.5 9.8 29 252-280 14-42 (249)
354 KOG1970 Checkpoint RAD17-RFC c 97.6 0.003 6.5E-08 67.8 17.6 184 255-454 111-321 (634)
355 PRK11823 DNA repair protein Ra 97.6 0.00025 5.4E-09 76.9 10.0 80 250-337 76-171 (446)
356 PF14516 AAA_35: AAA-like doma 97.6 0.0019 4.1E-08 67.5 16.2 168 252-438 29-233 (331)
357 cd01124 KaiC KaiC is a circadi 97.6 0.00047 1E-08 65.5 10.7 32 257-288 2-35 (187)
358 cd00464 SK Shikimate kinase (S 97.6 4.5E-05 9.8E-10 70.0 3.6 31 536-566 1-31 (154)
359 cd00983 recA RecA is a bacter 97.6 0.00043 9.3E-09 71.3 10.9 118 250-375 51-190 (325)
360 COG0714 MoxR-like ATPases [Gen 97.6 5.3E-05 1.1E-09 79.1 4.4 43 535-577 44-91 (329)
361 PRK00625 shikimate kinase; Pro 97.6 5.4E-05 1.2E-09 71.2 3.8 31 536-566 2-32 (173)
362 PRK03839 putative kinase; Prov 97.6 4.9E-05 1.1E-09 72.1 3.5 31 536-566 2-32 (180)
363 PRK07940 DNA polymerase III su 97.6 7.1E-05 1.5E-09 79.6 5.1 29 532-560 34-62 (394)
364 KOG0745 Putative ATP-dependent 97.6 8.1E-05 1.8E-09 77.2 5.2 53 535-590 227-283 (564)
365 PRK06835 DNA replication prote 97.6 8.3E-05 1.8E-09 77.1 5.3 56 512-571 165-223 (329)
366 PRK06921 hypothetical protein; 97.6 0.00013 2.8E-09 73.7 6.3 59 513-571 96-158 (266)
367 PF05707 Zot: Zonular occluden 97.6 0.0002 4.4E-09 68.7 7.5 67 323-399 80-146 (193)
368 PRK08939 primosomal protein Dn 97.5 0.00012 2.6E-09 75.3 5.9 39 533-571 155-196 (306)
369 PRK14532 adenylate kinase; Pro 97.5 6.5E-05 1.4E-09 71.7 3.7 30 536-565 2-31 (188)
370 PRK06620 hypothetical protein; 97.5 0.00012 2.6E-09 71.5 5.6 30 535-564 45-74 (214)
371 KOG0478 DNA replication licens 97.5 0.0002 4.2E-09 78.2 7.6 159 221-402 431-616 (804)
372 KOG2543 Origin recognition com 97.5 0.0011 2.4E-08 68.1 12.6 140 252-409 28-190 (438)
373 KOG2004 Mitochondrial ATP-depe 97.5 0.00015 3.2E-09 79.6 6.5 55 512-566 416-470 (906)
374 PF03215 Rad17: Rad17 cell cyc 97.5 0.00013 2.9E-09 80.0 6.3 57 509-570 25-81 (519)
375 PRK08181 transposase; Validate 97.5 9.4E-05 2E-09 74.5 4.8 38 534-571 106-146 (269)
376 PRK13947 shikimate kinase; Pro 97.5 7.8E-05 1.7E-09 69.9 3.9 31 536-566 3-33 (171)
377 COG1373 Predicted ATPase (AAA+ 97.5 0.001 2.3E-08 71.1 12.8 133 243-406 27-161 (398)
378 KOG0989 Replication factor C, 97.5 6.2E-05 1.3E-09 75.0 3.1 27 534-560 57-83 (346)
379 TIGR02688 conserved hypothetic 97.5 0.00066 1.4E-08 71.6 10.8 26 252-277 207-232 (449)
380 cd01393 recA_like RecA is a b 97.5 0.00041 8.9E-09 68.2 9.0 121 250-374 15-166 (226)
381 PLN03025 replication factor C 97.5 0.00015 3.1E-09 75.5 6.0 35 536-570 36-75 (319)
382 PRK14532 adenylate kinase; Pro 97.5 0.0005 1.1E-08 65.6 9.3 37 256-295 2-38 (188)
383 PRK13949 shikimate kinase; Pro 97.5 8.1E-05 1.7E-09 69.9 3.7 31 536-566 3-33 (169)
384 TIGR03420 DnaA_homol_Hda DnaA 97.5 0.00015 3.3E-09 71.2 5.8 38 532-569 36-76 (226)
385 TIGR02903 spore_lon_C ATP-depe 97.5 0.00049 1.1E-08 77.6 10.6 37 534-570 175-221 (615)
386 PRK13341 recombination factor 97.5 9.7E-05 2.1E-09 84.2 5.0 35 534-568 52-86 (725)
387 PF13671 AAA_33: AAA domain; P 97.5 7.6E-05 1.7E-09 67.6 3.3 26 537-562 2-27 (143)
388 PRK14531 adenylate kinase; Pro 97.5 9.4E-05 2E-09 70.4 4.0 30 536-565 4-33 (183)
389 COG1484 DnaC DNA replication p 97.5 0.00013 2.9E-09 73.0 5.2 54 513-571 89-145 (254)
390 KOG1808 AAA ATPase containing 97.5 0.00071 1.5E-08 82.3 12.1 131 255-409 441-596 (1856)
391 PF00158 Sigma54_activat: Sigm 97.5 0.00026 5.7E-09 66.3 6.8 36 535-570 23-61 (168)
392 PRK14960 DNA polymerase III su 97.5 0.00017 3.6E-09 80.0 6.4 29 532-560 35-63 (702)
393 COG1102 Cmk Cytidylate kinase 97.5 8.6E-05 1.9E-09 67.3 3.4 28 537-564 3-30 (179)
394 PRK06067 flagellar accessory p 97.5 0.00078 1.7E-08 66.7 10.5 39 250-288 21-61 (234)
395 PF00493 MCM: MCM2/3/5 family 97.5 0.00021 4.5E-09 74.6 6.5 155 221-413 26-222 (331)
396 KOG2680 DNA helicase TIP49, TB 97.4 0.00017 3.7E-09 71.4 5.4 61 529-591 61-123 (454)
397 PTZ00088 adenylate kinase 1; P 97.4 0.00012 2.5E-09 72.1 4.3 32 534-565 6-37 (229)
398 COG1241 MCM2 Predicted ATPase 97.4 0.00086 1.9E-08 75.1 11.3 56 221-279 288-344 (682)
399 KOG3347 Predicted nucleotide k 97.4 9.9E-05 2.1E-09 65.8 3.1 47 535-581 8-58 (176)
400 PRK00771 signal recognition pa 97.4 0.0013 2.8E-08 70.8 12.3 209 252-488 93-334 (437)
401 PRK07952 DNA replication prote 97.4 0.0002 4.3E-09 71.1 5.7 54 514-571 83-139 (244)
402 PF01695 IstB_IS21: IstB-like 97.4 0.00011 2.4E-09 69.5 3.6 39 533-571 46-87 (178)
403 PRK14722 flhF flagellar biosyn 97.4 0.00046 1E-08 72.5 8.5 113 251-385 134-267 (374)
404 PF10236 DAP3: Mitochondrial r 97.4 0.0074 1.6E-07 62.3 17.2 135 303-443 142-307 (309)
405 PRK07261 topology modulation p 97.4 0.00012 2.6E-09 68.8 3.7 32 536-567 2-33 (171)
406 PRK14956 DNA polymerase III su 97.4 0.00032 7E-09 75.5 7.4 28 533-560 39-66 (484)
407 cd02020 CMPK Cytidine monophos 97.4 0.00012 2.6E-09 66.6 3.5 30 537-566 2-31 (147)
408 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.00065 1.4E-08 67.2 9.0 122 250-374 15-167 (235)
409 PRK14974 cell division protein 97.4 0.0019 4.2E-08 67.1 12.6 27 253-279 139-165 (336)
410 PRK06217 hypothetical protein; 97.4 0.00016 3.4E-09 68.9 4.2 31 536-566 3-33 (183)
411 PRK09376 rho transcription ter 97.4 0.0012 2.6E-08 69.2 10.7 45 50-94 54-100 (416)
412 PHA02544 44 clamp loader, smal 97.4 0.0003 6.5E-09 73.0 6.5 38 532-569 41-78 (316)
413 PRK08903 DnaA regulatory inact 97.4 0.0003 6.6E-09 69.3 6.1 38 532-569 40-80 (227)
414 PRK12723 flagellar biosynthesi 97.4 0.0014 3.1E-08 69.3 11.5 132 253-405 173-328 (388)
415 PLN02674 adenylate kinase 97.4 0.00032 6.8E-09 69.5 6.0 34 532-565 29-62 (244)
416 PRK06645 DNA polymerase III su 97.3 0.00023 4.9E-09 78.0 5.4 30 532-561 41-70 (507)
417 PF13207 AAA_17: AAA domain; P 97.3 0.00021 4.5E-09 62.8 4.2 32 257-291 2-33 (121)
418 PRK14530 adenylate kinase; Pro 97.3 0.00015 3.3E-09 70.8 3.7 30 536-565 5-34 (215)
419 PRK09354 recA recombinase A; P 97.3 0.0012 2.6E-08 68.6 10.3 116 250-373 56-193 (349)
420 PRK13948 shikimate kinase; Pro 97.3 0.00021 4.5E-09 67.8 4.3 35 532-566 8-42 (182)
421 PRK06893 DNA replication initi 97.3 0.00013 2.8E-09 72.1 2.9 23 536-558 41-63 (229)
422 COG3854 SpoIIIAA ncharacterize 97.3 0.0012 2.7E-08 63.3 9.3 26 254-279 137-162 (308)
423 PRK12402 replication factor C 97.3 0.00033 7E-09 73.3 6.1 35 536-570 38-77 (337)
424 TIGR00764 lon_rel lon-related 97.3 0.00028 6.1E-09 79.3 5.9 55 535-593 38-105 (608)
425 COG4088 Predicted nucleotide k 97.3 0.0011 2.3E-08 62.6 8.6 23 257-279 4-26 (261)
426 cd02021 GntK Gluconate kinase 97.3 0.00018 3.9E-09 65.9 3.5 29 537-565 2-30 (150)
427 PRK15455 PrkA family serine pr 97.3 0.00046 9.9E-09 75.3 7.0 63 216-288 75-137 (644)
428 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.0012 2.6E-08 62.6 9.3 36 257-295 2-37 (183)
429 KOG3928 Mitochondrial ribosome 97.3 0.021 4.6E-07 59.5 18.5 137 303-447 299-458 (461)
430 PRK14958 DNA polymerase III su 97.3 0.00055 1.2E-08 75.3 7.7 30 532-561 36-65 (509)
431 PLN02200 adenylate kinase fami 97.3 0.00025 5.4E-09 70.2 4.6 36 530-565 39-74 (234)
432 PRK14961 DNA polymerase III su 97.3 0.00043 9.4E-09 73.3 6.6 29 532-560 36-64 (363)
433 PF13604 AAA_30: AAA domain; P 97.3 0.00047 1E-08 66.4 6.3 25 255-279 19-43 (196)
434 PRK08118 topology modulation p 97.3 0.00064 1.4E-08 63.6 6.8 25 255-279 2-26 (167)
435 PRK06547 hypothetical protein; 97.3 0.00037 8E-09 65.5 5.0 36 531-566 12-47 (172)
436 COG0703 AroK Shikimate kinase 97.3 0.00022 4.8E-09 66.1 3.4 32 535-566 3-34 (172)
437 PRK00149 dnaA chromosomal repl 97.2 0.00035 7.7E-09 76.2 5.5 37 534-570 148-189 (450)
438 PF04665 Pox_A32: Poxvirus A32 97.2 0.0085 1.8E-07 59.1 14.6 140 252-409 11-167 (241)
439 PHA02774 E1; Provisional 97.2 0.0013 2.8E-08 71.8 9.6 39 250-288 430-468 (613)
440 TIGR01313 therm_gnt_kin carboh 97.2 0.00021 4.6E-09 66.5 3.2 31 537-567 1-31 (163)
441 PRK00131 aroK shikimate kinase 97.2 0.00042 9.2E-09 64.9 5.2 40 252-294 2-41 (175)
442 PRK02496 adk adenylate kinase; 97.2 0.0003 6.5E-09 66.9 4.1 30 536-565 3-32 (184)
443 PF00910 RNA_helicase: RNA hel 97.2 0.00019 4.2E-09 61.9 2.5 23 537-559 1-23 (107)
444 PRK03731 aroL shikimate kinase 97.2 0.0003 6.6E-09 66.0 3.9 31 536-566 4-34 (171)
445 PHA00729 NTP-binding motif con 97.2 0.00035 7.5E-09 68.0 4.3 28 535-562 18-45 (226)
446 TIGR00362 DnaA chromosomal rep 97.2 0.00045 9.7E-09 74.3 5.7 37 534-570 136-177 (405)
447 cd03216 ABC_Carb_Monos_I This 97.2 0.0013 2.9E-08 61.2 8.1 29 250-278 22-50 (163)
448 TIGR01360 aden_kin_iso1 adenyl 97.2 0.0003 6.6E-09 66.9 3.8 30 536-565 5-34 (188)
449 TIGR02858 spore_III_AA stage I 97.2 0.002 4.3E-08 65.0 9.8 25 255-279 112-136 (270)
450 PF00448 SRP54: SRP54-type pro 97.2 0.0019 4.2E-08 62.0 9.3 25 254-278 1-25 (196)
451 PRK14949 DNA polymerase III su 97.2 0.00083 1.8E-08 76.9 7.8 30 532-561 36-65 (944)
452 PRK10536 hypothetical protein; 97.2 0.0016 3.5E-08 64.5 8.9 22 256-277 76-97 (262)
453 cd03222 ABC_RNaseL_inhibitor T 97.2 0.0011 2.3E-08 62.7 7.3 28 251-278 22-49 (177)
454 PF09848 DUF2075: Uncharacteri 97.2 0.0014 3E-08 69.2 9.0 23 256-278 3-25 (352)
455 PRK14528 adenylate kinase; Pro 97.2 0.00032 7E-09 66.9 3.8 30 536-565 3-32 (186)
456 PRK05057 aroK shikimate kinase 97.2 0.00038 8.3E-09 65.5 4.3 34 534-567 4-37 (172)
457 cd03283 ABC_MutS-like MutS-lik 97.2 0.0014 3E-08 63.2 8.2 31 248-278 19-49 (199)
458 TIGR02397 dnaX_nterm DNA polym 97.2 0.0011 2.3E-08 70.0 8.1 28 532-559 34-61 (355)
459 PF12780 AAA_8: P-loop contain 97.2 0.00047 1E-08 69.4 5.1 71 517-590 14-84 (268)
460 cd00267 ABC_ATPase ABC (ATP-bi 97.2 0.0012 2.7E-08 60.9 7.5 29 251-279 22-50 (157)
461 PRK14964 DNA polymerase III su 97.2 0.00068 1.5E-08 73.7 6.6 28 532-559 33-60 (491)
462 PRK04040 adenylate kinase; Pro 97.2 0.00039 8.5E-09 66.4 4.2 32 534-565 2-35 (188)
463 cd01129 PulE-GspE PulE/GspE Th 97.2 0.0088 1.9E-07 60.3 14.1 70 256-333 82-160 (264)
464 PF01078 Mg_chelatase: Magnesi 97.2 0.00026 5.7E-09 67.7 2.9 23 535-557 23-45 (206)
465 TIGR00416 sms DNA repair prote 97.2 0.0016 3.5E-08 70.7 9.4 79 250-336 90-184 (454)
466 PRK12323 DNA polymerase III su 97.1 0.00095 2.1E-08 74.1 7.5 29 532-560 36-64 (700)
467 cd01428 ADK Adenylate kinase ( 97.1 0.0029 6.4E-08 60.4 10.1 36 257-295 2-37 (194)
468 PRK14963 DNA polymerase III su 97.1 0.0011 2.3E-08 73.0 7.9 28 533-560 35-62 (504)
469 KOG1968 Replication factor C, 97.1 0.0013 2.7E-08 76.0 8.7 167 257-452 360-535 (871)
470 PRK14957 DNA polymerase III su 97.1 0.00083 1.8E-08 74.1 7.0 29 532-560 36-64 (546)
471 PF01583 APS_kinase: Adenylyls 97.1 0.00081 1.7E-08 61.8 5.8 58 534-591 2-68 (156)
472 PRK13531 regulatory ATPase Rav 97.1 0.00028 6.1E-09 75.8 3.2 41 534-574 39-85 (498)
473 COG0703 AroK Shikimate kinase 97.1 0.00041 9E-09 64.3 3.9 50 255-310 3-52 (172)
474 PF06745 KaiC: KaiC; InterPro 97.1 0.0028 6E-08 62.4 10.2 39 250-288 15-56 (226)
475 PRK09183 transposase/IS protei 97.1 0.00038 8.3E-09 70.0 4.0 38 534-571 102-142 (259)
476 cd00227 CPT Chloramphenicol (C 97.1 0.00034 7.4E-09 66.0 3.4 31 536-566 4-34 (175)
477 COG4608 AppF ABC-type oligopep 97.1 0.00094 2E-08 66.1 6.5 109 251-377 36-170 (268)
478 TIGR03877 thermo_KaiC_1 KaiC d 97.1 0.0029 6.2E-08 62.8 10.2 39 250-288 17-57 (237)
479 PF05272 VirE: Virulence-assoc 97.1 0.00099 2.1E-08 64.1 6.4 28 250-277 48-75 (198)
480 PF13671 AAA_33: AAA domain; P 97.1 0.00044 9.5E-09 62.6 3.8 34 257-293 2-35 (143)
481 PRK08084 DNA replication initi 97.1 0.00049 1.1E-08 68.3 4.4 25 535-559 46-70 (235)
482 PRK06526 transposase; Provisio 97.1 0.00029 6.4E-09 70.5 2.8 37 534-570 98-137 (254)
483 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.1 0.0018 3.9E-08 59.0 7.7 28 251-278 23-50 (144)
484 PTZ00035 Rad51 protein; Provis 97.1 0.0025 5.4E-08 66.5 9.7 29 250-278 114-142 (337)
485 COG1124 DppF ABC-type dipeptid 97.1 0.0016 3.5E-08 63.3 7.6 28 251-278 30-57 (252)
486 PRK13946 shikimate kinase; Pro 97.1 0.00046 1E-08 65.7 3.9 33 535-567 11-43 (184)
487 PF13401 AAA_22: AAA domain; P 97.1 0.00031 6.8E-09 62.4 2.6 38 534-571 4-49 (131)
488 PRK00279 adk adenylate kinase; 97.1 0.00041 8.9E-09 67.8 3.6 30 536-565 2-31 (215)
489 COG0488 Uup ATPase components 97.1 0.0025 5.4E-08 70.2 10.1 34 528-561 342-375 (530)
490 PRK05896 DNA polymerase III su 97.1 0.00086 1.9E-08 74.3 6.4 28 532-559 36-63 (605)
491 COG1126 GlnQ ABC-type polar am 97.1 0.0022 4.7E-08 61.3 8.2 26 252-277 26-51 (240)
492 PRK14955 DNA polymerase III su 97.1 0.00054 1.2E-08 73.4 4.7 29 532-560 36-64 (397)
493 PRK13695 putative NTPase; Prov 97.1 0.008 1.7E-07 56.5 12.2 23 256-278 2-24 (174)
494 cd03214 ABC_Iron-Siderophores_ 97.1 0.0016 3.5E-08 61.7 7.5 28 251-278 22-49 (180)
495 PRK04296 thymidine kinase; Pro 97.1 0.0028 6.1E-08 60.6 9.1 32 256-287 4-37 (190)
496 cd01131 PilT Pilus retraction 97.1 0.00093 2E-08 64.4 5.8 24 256-279 3-26 (198)
497 PF00406 ADK: Adenylate kinase 97.1 0.00038 8.3E-09 63.9 2.9 31 539-571 1-31 (151)
498 PHA02624 large T antigen; Prov 97.1 0.00078 1.7E-08 73.8 5.6 37 534-570 431-467 (647)
499 PLN02674 adenylate kinase 97.0 0.0019 4.2E-08 64.0 8.0 41 252-295 29-69 (244)
500 PRK14526 adenylate kinase; Pro 97.0 0.00052 1.1E-08 66.8 3.9 30 536-565 2-31 (211)
No 1
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-116 Score=893.51 Aligned_cols=579 Identities=54% Similarity=0.852 Sum_probs=539.2
Q ss_pred CCCceeEEEeecCCcccccccEEEeChhhhcccCCCCCCceEEEEeCCcEEEEEeeCCCCCCCceeeCHhhhhccCccCC
Q 007661 9 SSGVTTMNVINTPSADLALTNLAYCSPADLLNFRVPNSNLFLASVAGDSFVLSLASHPSVNKGQIALNSVQRRHAKVSTG 88 (594)
Q Consensus 9 ~~~~~~l~v~~~p~~~~~~tn~a~vsp~~~~~l~~~g~~~~~v~v~g~~~v~~~~~~~~~~~~~i~~~~~~r~~~~~~~~ 88 (594)
++..+.++|.+||++++++|||+||||.||++. .++.+.+-+|+|+...++++++|.|+++..||+|+++++|
T Consensus 5 ~~~~~~~~v~k~ps~e~altn~a~v~~~DF~~~-------~~~~vd~~~~~Fs~~~~~~i~~g~i~fs~~qR~wa~~Sl~ 77 (744)
T KOG0741|consen 5 VSNIKAFQVTKCPSNELALTNCAYVSPSDFRQF-------QVIIVDNFHYVFSTEFTPSIPPGNIGFSLPQRKWAGWSLG 77 (744)
T ss_pred cccceeeeeecCCchhhhccCcceeCccccccc-------eeeEEeeeeEEEEeeccCCCCCceeccchhhhhhhhcccC
Confidence 455789999999999999999999999999863 3444533479999999999999999999999999999999
Q ss_pred CeEEEEEeCCC-CcceeEeEEEEeeeeecCC-ccccccHHHHHHHHHHHhccCcccCCcEEEEEEcC-eeEEEEEEEeee
Q 007661 89 DHVSLNRFIPP-EDFNLALLTVELEFVKKGS-KNEQVDAVLLANQLRKRFINQVMTAGQRVVFEYHG-NNYIFTVNGAAV 165 (594)
Q Consensus 89 ~~v~v~~~~~~-~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~v~~~~~ 165 (594)
|.|.|+||.++ ...+++++++++||.+++. +..++|.++++..|+.+|.+|++++||.+++.|.+ ..+.++|++++.
T Consensus 78 qev~V~~~~~~~~~~~l~~m~le~dF~~k~~~~sep~Dad~ma~qF~~~y~~q~fsvgQ~~~f~f~~~~~l~l~v~~ie~ 157 (744)
T KOG0741|consen 78 QEVEVKPFTFDGSCDYLGSMTLEIDFLNKKNTTSEPFDADEMAKQFKRQYNSQAFSVGQQLVFEFNGNKLLGLKVKDIEA 157 (744)
T ss_pred ceeEEEecccCcccccceeEEEEehhhhcCCCCCCCCCHHHHHHHHHHHhcCcccCCccEEEEEecCceEeeeEEEEEee
Confidence 99999999977 4579999999999998875 67899999999999999999999999999999998 557888888765
Q ss_pred -c-----Ccc---ccccccceeEcCCcEEEEEecCCCceeeecccC-CccccccccCccccccCCccCcHHHHHHHHHHH
Q 007661 166 -E-----GQE---KSNALERGIITNETYFVFEASNDSGIKIVNQRE-GANSNIFRHKEFNLQSLGIGGLSAEFADIFRRA 235 (594)
Q Consensus 166 -~-----~~~---~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~ 235 (594)
+ +.. ......+|++.++|.|.|.+...+.+++.++.+ .+.++.+..|+|+|+++|||||++++..|||+|
T Consensus 158 ~D~~~~~~~~a~~~~~~~~~G~l~~nT~i~F~k~~~s~lnL~~~~~~k~~~n~ii~Pdf~Fe~mGIGGLd~EFs~IFRRA 237 (744)
T KOG0741|consen 158 FDPGISEGESAVTKRQKIERGLLLGNTQIVFEKAENSSLNLIGKSKTKPASNSIINPDFNFESMGIGGLDKEFSDIFRRA 237 (744)
T ss_pred eccccccCCcccccccceeeeEeecCcEEEEEeccCcceEeeccccccchhccccCCCCChhhcccccchHHHHHHHHHH
Confidence 1 111 113467899999999999999999999988743 233444444999999999999999999999999
Q ss_pred HHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhcc
Q 007661 236 FASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQR 315 (594)
Q Consensus 236 ~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~ 315 (594)
|++++++|++.+++|++|.+|||||||||||||++||.|++++++.++.+||+|++++||+|++|+++|++|.+|++.++
T Consensus 238 FAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r 317 (744)
T KOG0741|consen 238 FASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQR 317 (744)
T ss_pred HHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceee
Q 007661 316 TRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVE 395 (594)
Q Consensus 316 ~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~ 395 (594)
.+|..+..|||+|||||++|++||+..+++++++.+++|||+.|||+++.+|++|||+|||.|+||+||+|||||+.+++
T Consensus 318 ~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmE 397 (744)
T KOG0741|consen 318 RLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQME 397 (744)
T ss_pred hhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcc--cCCCCcccchhh
Q 007661 396 ISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMD--DLTKPVDEESIK 473 (594)
Q Consensus 396 i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~--~~~~~~~~~~~~ 473 (594)
+.+||++.|.+||++|+++|..+..+..|+|+.+||..|.+|+||+|+++++.|.++|++|++... ....+...++.+
T Consensus 398 IsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lk 477 (744)
T KOG0741|consen 398 ISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLK 477 (744)
T ss_pred EeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhhee
Confidence 999999999999999999999999999999999999999999999999999999999999998866 333445678899
Q ss_pred cchhHHHHHHHhcccCCCcCCccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHH
Q 007661 474 VTMDDFLHALYEIVPAFGASTDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAAT 553 (594)
Q Consensus 474 vt~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAka 553 (594)
|+++||..|+.+++|+|+.+.+++.....+|++.|+....+++.....++++.+.+..+|..++||.||||+|||+||..
T Consensus 478 V~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~ 557 (744)
T KOG0741|consen 478 VTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAK 557 (744)
T ss_pred ecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCEEEEeccccccccccchhhhHHHHHHHhhhcCC
Q 007661 554 AGIDSDFPFVKIISAESMIGLHESTKCAQIVKVSECQFSGS 594 (594)
Q Consensus 554 lA~~~~~~fi~v~~~e~~vG~sE~~~~~~ir~~F~~A~~~~ 594 (594)
+|..++||||+|.+||.+||.||.+||++|+++|++||||.
T Consensus 558 iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~ 598 (744)
T KOG0741|consen 558 IALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSP 598 (744)
T ss_pred HHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999999999999999999999999984
No 2
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-77 Score=621.16 Aligned_cols=360 Identities=30% Similarity=0.471 Sum_probs=329.3
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
+++.|++ |||+++++.++ .+++.. +.||+.|..+|+.||+|||||||||||||+||+++|.++ +.+++.++++++
T Consensus 185 snv~f~d--iGG~d~~~~el-~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-~vPf~~isApei 259 (802)
T KOG0733|consen 185 SNVSFSD--IGGLDKTLAEL-CELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-GVPFLSISAPEI 259 (802)
T ss_pred CCcchhh--ccChHHHHHHH-HHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-CCceEeecchhh
Confidence 6788999 99999999999 676666 999999999999999999999999999999999999998 688999999999
Q ss_pred hhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcccc----Cc
Q 007661 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESL----NN 367 (594)
Q Consensus 292 ~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~----~~ 367 (594)
++.+.|++|+++|++|++|.... |||+||||||++.|+|...+ .+..++++.|||+.||++... ..
T Consensus 260 vSGvSGESEkkiRelF~~A~~~a--------PcivFiDeIDAI~pkRe~aq--reMErRiVaQLlt~mD~l~~~~~~g~~ 329 (802)
T KOG0733|consen 260 VSGVSGESEKKIRELFDQAKSNA--------PCIVFIDEIDAITPKREEAQ--REMERRIVAQLLTSMDELSNEKTKGDP 329 (802)
T ss_pred hcccCcccHHHHHHHHHHHhccC--------CeEEEeecccccccchhhHH--HHHHHHHHHHHHHhhhcccccccCCCC
Confidence 99999999999999999999985 66999999999999998754 367899999999999998654 56
Q ss_pred EEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHH
Q 007661 368 VLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAK 447 (594)
Q Consensus 368 v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~ 447 (594)
|+|||+|||||.|||+|+|+|||+++|.++.|++.+|.+||++.++++. +..++|+.+||+.|.||+|+||++||.
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lr----l~g~~d~~qlA~lTPGfVGADL~AL~~ 405 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLR----LSGDFDFKQLAKLTPGFVGADLMALCR 405 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCC----CCCCcCHHHHHhcCCCccchhHHHHHH
Confidence 9999999999999999999999999999999999999999999999998 677999999999999999999999999
Q ss_pred HHHHHHHHhccCcccC--C-----CC-----c-------------------------------------ccchhhcchhH
Q 007661 448 SAVSFALNRQLSMDDL--T-----KP-----V-------------------------------------DEESIKVTMDD 478 (594)
Q Consensus 448 ~A~~~a~~r~~~~~~~--~-----~~-----~-------------------------------------~~~~~~vt~~d 478 (594)
+|+..|++|+++.... . +. . ..+...|+.+|
T Consensus 406 ~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eD 485 (802)
T KOG0733|consen 406 EAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFED 485 (802)
T ss_pred HHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHH
Confidence 9999999998763220 0 00 0 01124588999
Q ss_pred HHHHHHhcccCCCcC----CccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHH
Q 007661 479 FLHALYEIVPAFGAS----TDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATA 554 (594)
Q Consensus 479 f~~al~~~~ps~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkal 554 (594)
|.+|+..++|++... .+++.|.+++++..+..++...+.++.++++.++..+..+|.||||+||||||||+||||+
T Consensus 486 F~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAV 565 (802)
T KOG0733|consen 486 FEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAV 565 (802)
T ss_pred HHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHH
Confidence 999999999997653 6889999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCEEEEeccccc---cccccchhhhHHHHHHHhhhcCC
Q 007661 555 GIDSDFPFVKIISAESM---IGLHESTKCAQIVKVSECQFSGS 594 (594)
Q Consensus 555 A~~~~~~fi~v~~~e~~---vG~sE~~~~~~ir~~F~~A~~~~ 594 (594)
|+|+|+|||+|||||+| |||||++ ||.+|++||.|.
T Consensus 566 ANEag~NFisVKGPELlNkYVGESErA----VR~vFqRAR~sa 604 (802)
T KOG0733|consen 566 ANEAGANFISVKGPELLNKYVGESERA----VRQVFQRARASA 604 (802)
T ss_pred hhhccCceEeecCHHHHHHHhhhHHHH----HHHHHHHhhcCC
Confidence 99999999999999995 9999998 999999999874
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-70 Score=574.44 Aligned_cols=498 Identities=28% Similarity=0.403 Sum_probs=399.5
Q ss_pred eEEEeecCCcccccccEEEeChhhhcccCC-CCCCceEEEEeCCc---EEEEEeeCCCCCCCceeeCHhhhhccCccCCC
Q 007661 14 TMNVINTPSADLALTNLAYCSPADLLNFRV-PNSNLFLASVAGDS---FVLSLASHPSVNKGQIALNSVQRRHAKVSTGD 89 (594)
Q Consensus 14 ~l~v~~~p~~~~~~tn~a~vsp~~~~~l~~-~g~~~~~v~v~g~~---~v~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~ 89 (594)
.+.|.. .+++. . .+.+++..|..++. +| +.+.|+. .+.....++. ....+.++...|.++.++.|+
T Consensus 17 ~~~v~~-~~~~~--~-~~~~~~~~~~~~~l~~g-----~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~r~~l~~~~~~ 86 (693)
T KOG0730|consen 17 NLVVLS-INDDA--S-VVVLSEGAMDKLGLLRG-----VLLDGKKRREPVDAVVQDET-SELIGRQTMVSRSNLRLQLGR 86 (693)
T ss_pred CeEEec-CCCcc--c-hheecHHHHhhhcCCcc-----eEEECccccCCccceeccCC-ccccchhhheeccchhhcccc
Confidence 345555 33432 2 88889999988876 33 4554432 3443333444 678888999999999999999
Q ss_pred eEEEEEeCCCCcceeEeEEEEeeeeecCCccccccHHHHHHHHHHHhc--cCcccCCcEEEEEEcCeeEEEEEEEeeecC
Q 007661 90 HVSLNRFIPPEDFNLALLTVELEFVKKGSKNEQVDAVLLANQLRKRFI--NQVMTAGQRVVFEYHGNNYIFTVNGAAVEG 167 (594)
Q Consensus 90 ~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~ 167 (594)
.|.+.+ .|+-.+......+.++... ..++.+.+....+..+. ..++..|+.. .......+++.+..+
T Consensus 87 ~~~~~~-~p~v~~~~~i~~l~~~~~~-----~~i~~~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-- 155 (693)
T KOG0730|consen 87 LLHSSD-CPSVKRPARIAVLPVDDTS-----EGIAGELFDVLERPFLLEALRPLVKGDTF---AGLNPAEFKVLELDP-- 155 (693)
T ss_pred eecccC-CCCccccceeeeeehhhcc-----ccchhhhhhhhhhhhhhhhhCccccccch---hhhhhhhhhcccccc--
Confidence 999998 4442222222222233322 22333322222222221 1224555532 122233445544433
Q ss_pred ccccccccceeEcCCcEEEEEecCCCceeeecccCCccccccccCccccccCCccCcHHHHHHHHHHHHHccCCChhhhh
Q 007661 168 QEKSNALERGIITNETYFVFEASNDSGIKIVNQREGANSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTS 247 (594)
Q Consensus 168 ~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~ 247 (594)
.. ++.++|.+.+.......-. . ..+++. .+ +||+..+++.+ ++++.+|+.+|..+.
T Consensus 156 ------~~--~v~~~t~~~~~~~~~~~~~----------~--~~~~~~-~~--~gg~~~~~~~i-~e~v~~pl~~~~~~~ 211 (693)
T KOG0730|consen 156 ------SP--QVTPDTELSYLGEPAKREE----------E--ELPEVG-DD--IGGLKRQLSVI-RELVELPLRHPALFK 211 (693)
T ss_pred ------ch--hcCccchhhhcCCCccccc----------c--cccccc-cc--cchhHHHHHHH-HHHHHhhhcchhhhh
Confidence 11 6667777666543322100 0 013445 45 99999999999 999999999999999
Q ss_pred hcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEE
Q 007661 248 KLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVII 327 (594)
Q Consensus 248 ~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~ 327 (594)
..|+++|+|+|+|||||||||.+++++|++.. .+++.++++++++++.|+++.++|+.|++|...+. |++||
T Consensus 212 s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~-a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~-------psii~ 283 (693)
T KOG0730|consen 212 SIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG-AFLFLINGPELISKFPGETESNLRKAFAEALKFQV-------PSIIF 283 (693)
T ss_pred hcCCCCCCCccccCCCCCChHHHHHHHHHHhC-ceeEecccHHHHHhcccchHHHHHHHHHHHhccCC-------CeeEe
Confidence 99999999999999999999999999999984 66788999999999999999999999999999871 55999
Q ss_pred EccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHH
Q 007661 328 FDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQI 407 (594)
Q Consensus 328 iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~I 407 (594)
|||+|+++|++....+ +.++++.||++.||++....+++|+++||+|+.||++++| |||+++++|+.|+..+|.+|
T Consensus 284 IdEld~l~p~r~~~~~---~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldI 359 (693)
T KOG0730|consen 284 IDELDALCPKREGADD---VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDI 359 (693)
T ss_pred HHhHhhhCCcccccch---HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHH
Confidence 9999999999877543 6889999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcc
Q 007661 408 LQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 487 (594)
Q Consensus 408 L~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 487 (594)
++.++++|+ +.+++++.++|..|+||+|+||.++|++|.+.+.++ ++++|..|+..+.
T Consensus 360 l~~l~k~~~----~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~------------------~~~~~~~A~~~i~ 417 (693)
T KOG0730|consen 360 LRVLTKKMN----LLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR------------------TLEIFQEALMGIR 417 (693)
T ss_pred HHHHHHhcC----CcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh------------------hHHHHHHHHhcCC
Confidence 999999998 557899999999999999999999999999998875 7889999999999
Q ss_pred cCCC----cCCccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEE
Q 007661 488 PAFG----ASTDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFV 563 (594)
Q Consensus 488 ps~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi 563 (594)
|+.. ++.+++.|.+++|+.+++..+++.+.|+.++++.|.+++.+||+|||||||||||||++|||+|+++++||+
T Consensus 418 psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFl 497 (693)
T KOG0730|consen 418 PSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFL 497 (693)
T ss_pred chhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCee
Confidence 8753 567889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccc---cccccchhhhHHHHHHHhhhcCC
Q 007661 564 KIISAESM---IGLHESTKCAQIVKVSECQFSGS 594 (594)
Q Consensus 564 ~v~~~e~~---vG~sE~~~~~~ir~~F~~A~~~~ 594 (594)
+|+|||+| |||||++ ||++|++||++.
T Consensus 498 svkgpEL~sk~vGeSEr~----ir~iF~kAR~~a 527 (693)
T KOG0730|consen 498 SVKGPELFSKYVGESERA----IREVFRKARQVA 527 (693)
T ss_pred eccCHHHHHHhcCchHHH----HHHHHHHHhhcC
Confidence 99999996 9999998 999999999863
No 4
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.5e-64 Score=575.07 Aligned_cols=526 Identities=28% Similarity=0.398 Sum_probs=438.7
Q ss_pred eEEEeecCCcccccccEEEeChhhhcccCCCCCCceEEEEe-CC-cEEEEEee--CCCCCCCceeeCHhhhhccCccCCC
Q 007661 14 TMNVINTPSADLALTNLAYCSPADLLNFRVPNSNLFLASVA-GD-SFVLSLAS--HPSVNKGQIALNSVQRRHAKVSTGD 89 (594)
Q Consensus 14 ~l~v~~~p~~~~~~tn~a~vsp~~~~~l~~~g~~~~~v~v~-g~-~~v~~~~~--~~~~~~~~i~~~~~~r~~~~~~~~~ 89 (594)
.++|..+... ....+.++++|+.|.+|++. .+++|.+. |+ ..+..+++ .++.+.+.|.+|+.+|.|+++.+||
T Consensus 3 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (733)
T TIGR01243 3 ELRVAEAYPR-DVGRGIVRIDRQTAARLGVE--PGDFVEIEKGDRSVVAIVWPLRPDDEGRGIIRMDGYLRANAGVTIGD 79 (733)
T ss_pred EEEehhhhcc-CCCCCeEeeCHHHHHhcCCC--CCCEEEEecCCCceeEEEEecCccccCCCEEeecHHHHhhcCCCCCC
Confidence 5677777433 44799999999999999984 24899987 53 46667775 3567889999999999999999999
Q ss_pred eEEEEEeCCCCcceeEeEEEEeeeeecCCccccccHHHHHHHHHHHhccCcccCCcEEEEEEcCeeEEEEEEEeeecCcc
Q 007661 90 HVSLNRFIPPEDFNLALLTVELEFVKKGSKNEQVDAVLLANQLRKRFINQVMTAGQRVVFEYHGNNYIFTVNGAAVEGQE 169 (594)
Q Consensus 90 ~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~ 169 (594)
.|+|+++..+ .+..+++.-. . .......+..+++..+.++++..|+.+.+.+.+..+.|.|.++.|
T Consensus 80 ~~~~~~~~~~---~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~p---- 145 (733)
T TIGR01243 80 TVTVERAEVK---EAKKVVLAPT-----Q--PIRFGRDFVDYVKEFLLGKPISKGETVIVPVLEGALPFVVVSTQP---- 145 (733)
T ss_pred eEEEeecCCC---ccceEeeccc-----c--ccccccchHHHHHHHHcCCCCCCCCEEEecccCcceeEEEEecCC----
Confidence 9999988643 2233333110 0 001123456778899999999999999988877778888888877
Q ss_pred ccccccceeEcCCcEEEEEecCCCceeeecccCCccccccccCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhc
Q 007661 170 KSNALERGIITNETYFVFEASNDSGIKIVNQREGANSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKL 249 (594)
Q Consensus 170 ~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~ 249 (594)
...+.+...|.+.+........ .. ...++++|++ |||++++++++ ++++..++.+|++++++
T Consensus 146 ----~~~~~~~~~t~~~~~~~~~~~~--------~~---~~~~~~~~~d--i~G~~~~~~~l-~~~i~~~~~~~~~~~~~ 207 (733)
T TIGR01243 146 ----AGFVYVTEATEVEIREKPVREE--------IE---RKVPKVTYED--IGGLKEAKEKI-REMVELPMKHPELFEHL 207 (733)
T ss_pred ----CCcEEECCCceEEecCCccccc--------cc---cCCCCCCHHH--hcCHHHHHHHH-HHHHHHHhhCHHHHHhc
Confidence 3466778888887653321110 00 0127899999 99999999999 99999999999999999
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEc
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFD 329 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iD 329 (594)
|+.+++++|||||||||||++|+++|+++. ..++.++++++.++|.|+++..++.+|+.+.... |+|||||
T Consensus 208 gi~~~~giLL~GppGtGKT~laraia~~~~-~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~--------p~il~iD 278 (733)
T TIGR01243 208 GIEPPKGVLLYGPPGTGKTLLAKAVANEAG-AYFISINGPEIMSKYYGESEERLREIFKEAEENA--------PSIIFID 278 (733)
T ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHhC-CeEEEEecHHHhcccccHHHHHHHHHHHHHHhcC--------CcEEEee
Confidence 999999999999999999999999999984 5678899999999999999999999999998765 5599999
Q ss_pred cchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHH
Q 007661 330 EIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQ 409 (594)
Q Consensus 330 Eid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~ 409 (594)
|+|.++++++...+ +...+++++|+..|+++....+++||++||+++.||++++|++||+..++++.|+.++|.+||+
T Consensus 279 Eid~l~~~r~~~~~--~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~ 356 (733)
T TIGR01243 279 EIDAIAPKREEVTG--EVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILK 356 (733)
T ss_pred hhhhhcccccCCcc--hHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHH
Confidence 99999988765332 4567889999999999988889999999999999999999999999999999999999999999
Q ss_pred HHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCC--C-Cc---ccchhhcchhHHHHHH
Q 007661 410 IHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLT--K-PV---DEESIKVTMDDFLHAL 483 (594)
Q Consensus 410 ~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~--~-~~---~~~~~~vt~~df~~al 483 (594)
.+++.+. +..+.++..+++.++||+++|+..+|++|.+.+++|.+...... . .. ......++++||..|+
T Consensus 357 ~~~~~~~----l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al 432 (733)
T TIGR01243 357 VHTRNMP----LAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEAL 432 (733)
T ss_pred HHhcCCC----CccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHH
Confidence 9988775 56788999999999999999999999999999998876522111 1 11 1234578999999999
Q ss_pred HhcccCCCc----CCccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcC
Q 007661 484 YEIVPAFGA----STDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSD 559 (594)
Q Consensus 484 ~~~~ps~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~ 559 (594)
..+.|+... ..+.+.|.+++|....+..+.+.+.++..+.+.+.+.+..++.|+|||||||||||++|+++|++++
T Consensus 433 ~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~ 512 (733)
T TIGR01243 433 KMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG 512 (733)
T ss_pred hhccccccchhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 999988532 3456788888898888888999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecccc---ccccccchhhhHHHHHHHhhhcC
Q 007661 560 FPFVKIISAES---MIGLHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 560 ~~fi~v~~~e~---~vG~sE~~~~~~ir~~F~~A~~~ 593 (594)
+||+.+++|++ |+|+||++ ||++|+.||++
T Consensus 513 ~~fi~v~~~~l~~~~vGese~~----i~~~f~~A~~~ 545 (733)
T TIGR01243 513 ANFIAVRGPEILSKWVGESEKA----IREIFRKARQA 545 (733)
T ss_pred CCEEEEehHHHhhcccCcHHHH----HHHHHHHHHhc
Confidence 99999999998 59999998 99999999975
No 5
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-60 Score=470.31 Aligned_cols=286 Identities=36% Similarity=0.594 Sum_probs=256.0
Q ss_pred ccceeEcCCcEEEEEecCCCceeeecccCCccc---cccccCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcC
Q 007661 174 LERGIITNETYFVFEASNDSGIKIVNQREGANS---NIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLG 250 (594)
Q Consensus 174 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g 250 (594)
.+...+.++.+|.+.....+.+.+.+.+..+.- .+.+.|+++|++ ||||++|+++| ++++++|+.+|++|+++|
T Consensus 105 vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~d--IGGL~~Qi~Ei-rE~VELPL~~PElF~~~G 181 (406)
T COG1222 105 VDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYED--IGGLDEQIQEI-REVVELPLKNPELFEELG 181 (406)
T ss_pred cCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhh--ccCHHHHHHHH-HHHhcccccCHHHHHHcC
Confidence 456677888888888777777777665533222 234569999999 99999999999 999999999999999999
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEcc
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 330 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDE 330 (594)
+.||+|||||||||||||++|||+|++.+ ..|+.+.+++++.||+|+..+.+|++|+.|+.+. ||||||||
T Consensus 182 I~PPKGVLLYGPPGTGKTLLAkAVA~~T~-AtFIrvvgSElVqKYiGEGaRlVRelF~lAreka--------PsIIFiDE 252 (406)
T COG1222 182 IDPPKGVLLYGPPGTGKTLLAKAVANQTD-ATFIRVVGSELVQKYIGEGARLVRELFELAREKA--------PSIIFIDE 252 (406)
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccC-ceEEEeccHHHHHHHhccchHHHHHHHHHHhhcC--------CeEEEEec
Confidence 99999999999999999999999999986 4567789999999999999999999999999986 56999999
Q ss_pred chhhhccCCCCC-CCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHH
Q 007661 331 IDAICKSRGSTR-DGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQ 409 (594)
Q Consensus 331 id~l~~~~~~~~-~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~ 409 (594)
||++..+|...+ ++....++.+-+||++|||+...++|-||+|||+++.|||||+||||||+.|+||+||.++|.+||+
T Consensus 253 IDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~ 332 (406)
T COG1222 253 IDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILK 332 (406)
T ss_pred hhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHH
Confidence 999999986643 3344567778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhccc
Q 007661 410 IHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVP 488 (594)
Q Consensus 410 ~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~p 488 (594)
+|+++|. +..++|++.||..+.|+|||||+++|.+|.++|++. ....||++||.+|.+++..
T Consensus 333 IHtrkM~----l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~-------------~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 333 IHTRKMN----LADDVDLELLARLTEGFSGADLKAICTEAGMFAIRE-------------RRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred HHhhhcc----CccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHh-------------ccCeecHHHHHHHHHHHHh
Confidence 9999998 889999999999999999999999999999999984 3568999999999998844
No 6
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-52 Score=440.67 Aligned_cols=253 Identities=42% Similarity=0.704 Sum_probs=238.8
Q ss_pred cccCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEec
Q 007661 209 FRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNG 288 (594)
Q Consensus 209 ~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~ 288 (594)
.+.|+++|+| |||+++.+.++ ++++.+|+.||+.|.++|+.||+|||||||||||||++||++|++. +.+++.|.+
T Consensus 426 ve~p~v~W~d--IGGlE~lK~el-q~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~-~~nFlsvkg 501 (693)
T KOG0730|consen 426 VEMPNVSWDD--IGGLEELKREL-QQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA-GMNFLSVKG 501 (693)
T ss_pred ccCCCCChhh--ccCHHHHHHHH-HHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh-cCCeeeccC
Confidence 4459999999 99999999999 9999999999999999999999999999999999999999999997 577889999
Q ss_pred chhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcE
Q 007661 289 PEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNV 368 (594)
Q Consensus 289 ~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v 368 (594)
++++++|+|++|+.++++|+.|++.+ ||||||||||+++.+|+++.+ ++.++++++||++|||+....+|
T Consensus 502 pEL~sk~vGeSEr~ir~iF~kAR~~a--------P~IiFfDEiDsi~~~R~g~~~--~v~~RVlsqLLtEmDG~e~~k~V 571 (693)
T KOG0730|consen 502 PELFSKYVGESERAIREVFRKARQVA--------PCIIFFDEIDALAGSRGGSSS--GVTDRVLSQLLTEMDGLEALKNV 571 (693)
T ss_pred HHHHHHhcCchHHHHHHHHHHHhhcC--------CeEEehhhHHhHhhccCCCcc--chHHHHHHHHHHHcccccccCcE
Confidence 99999999999999999999999875 569999999999999985433 88999999999999999999999
Q ss_pred EEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHH
Q 007661 369 LLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKS 448 (594)
Q Consensus 369 ~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~ 448 (594)
+|||+||+|+.||+||+||||||+.|++|+||.+.|.+||+.++++|+ +.+++|+++||+.|+|||||||.++|++
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp----~~~~vdl~~La~~T~g~SGAel~~lCq~ 647 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP----FSEDVDLEELAQATEGYSGAEIVAVCQE 647 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC----CCccccHHHHHHHhccCChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 7889999999999999999999999999
Q ss_pred HHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcccCC
Q 007661 449 AVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAF 490 (594)
Q Consensus 449 A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ps~ 490 (594)
|+..|+++.+. ...|+.+||.+|++..+|+.
T Consensus 648 A~~~a~~e~i~-----------a~~i~~~hf~~al~~~r~s~ 678 (693)
T KOG0730|consen 648 AALLALRESIE-----------ATEITWQHFEEALKAVRPSL 678 (693)
T ss_pred HHHHHHHHhcc-----------cccccHHHHHHHHHhhcccC
Confidence 99999998653 46789999999999998875
No 7
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-51 Score=427.14 Aligned_cols=264 Identities=36% Similarity=0.589 Sum_probs=240.5
Q ss_pred cCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecch
Q 007661 211 HKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 290 (594)
Q Consensus 211 ~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~ 290 (594)
.|+++|+| ||||++...++ ..++..|+++|+.|+.+|+..|.|||||||||||||+||||+|++. +.+|+.|.|++
T Consensus 505 VPdVtW~d--IGaL~~vR~eL-~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa-g~NFisVKGPE 580 (802)
T KOG0733|consen 505 VPDVTWDD--IGALEEVRLEL-NMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA-GANFISVKGPE 580 (802)
T ss_pred cCCCChhh--cccHHHHHHHH-HHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc-cCceEeecCHH
Confidence 59999999 99999999998 9999999999999999999999999999999999999999999996 67889999999
Q ss_pred hhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEE
Q 007661 291 VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLL 370 (594)
Q Consensus 291 l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~v 370 (594)
++++|+|++|+.+|.+|+.|+..+ ||||||||+|+|+++|+... +....++++|||++|||++.+.+|.|
T Consensus 581 LlNkYVGESErAVR~vFqRAR~sa--------PCVIFFDEiDaL~p~R~~~~--s~~s~RvvNqLLtElDGl~~R~gV~v 650 (802)
T KOG0733|consen 581 LLNKYVGESERAVRQVFQRARASA--------PCVIFFDEIDALVPRRSDEG--SSVSSRVVNQLLTELDGLEERRGVYV 650 (802)
T ss_pred HHHHHhhhHHHHHHHHHHHhhcCC--------CeEEEecchhhcCcccCCCC--chhHHHHHHHHHHHhcccccccceEE
Confidence 999999999999999999999875 67999999999999998765 46789999999999999999999999
Q ss_pred EEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcC--CCCHHHHHHHHHH
Q 007661 371 IGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK--NYSGAELEGVAKS 448 (594)
Q Consensus 371 I~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~--g~sg~dl~~l~~~ 448 (594)
||+|||||.||||++|||||+..+++++|+.++|.+||+.+++. ...++.+|+|+++||..+. ||+|+||.+||++
T Consensus 651 iaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn--~k~pl~~dVdl~eia~~~~c~gftGADLaaLvre 728 (802)
T KOG0733|consen 651 IAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKN--TKPPLSSDVDLDEIARNTKCEGFTGADLAALVRE 728 (802)
T ss_pred EeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhcc--CCCCCCcccCHHHHhhcccccCCchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999995 2334889999999999887 9999999999999
Q ss_pred HHHHHHHhccCcccCCCCc---ccchhhcchhHHHHHHHhcccCC
Q 007661 449 AVSFALNRQLSMDDLTKPV---DEESIKVTMDDFLHALYEIVPAF 490 (594)
Q Consensus 449 A~~~a~~r~~~~~~~~~~~---~~~~~~vt~~df~~al~~~~ps~ 490 (594)
|...|+++.+...+..... ......++..||.+|++.++|+.
T Consensus 729 Asi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 729 ASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred HHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCc
Confidence 9999998876544333221 11245688999999999999985
No 8
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-49 Score=421.60 Aligned_cols=263 Identities=37% Similarity=0.636 Sum_probs=242.6
Q ss_pred cCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecch
Q 007661 211 HKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 290 (594)
Q Consensus 211 ~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~ 290 (594)
.|+++|+| ||||++.+.+| .+.+.+|+.||++|.. |+++..|||||||||||||++|||+|.+++ ..+..|.|+|
T Consensus 666 IPnV~WdD--VGGLeevK~eI-ldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcs-L~FlSVKGPE 740 (953)
T KOG0736|consen 666 IPNVSWDD--VGGLEEVKTEI-LDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECS-LNFLSVKGPE 740 (953)
T ss_pred CCccchhc--ccCHHHHHHHH-HHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhce-eeEEeecCHH
Confidence 48999999 99999999999 7899999999999986 899999999999999999999999999985 6688999999
Q ss_pred hhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc--ccCcE
Q 007661 291 VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE--SLNNV 368 (594)
Q Consensus 291 l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~--~~~~v 368 (594)
++++|+|++|+++|++|+.|+... ||||||||+|+++|+||.+.++.+++++++.|||.+|||+. ....|
T Consensus 741 LLNMYVGqSE~NVR~VFerAR~A~--------PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~V 812 (953)
T KOG0736|consen 741 LLNMYVGQSEENVREVFERARSAA--------PCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDV 812 (953)
T ss_pred HHHHHhcchHHHHHHHHHHhhccC--------CeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCce
Confidence 999999999999999999999874 77999999999999999999988999999999999999998 45689
Q ss_pred EEEEeeCCcccccHHhhCCCCccceeecCCC-CHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcC-CCCHHHHHHHH
Q 007661 369 LLIGMTNRKDMLDEALLRPGRLEVQVEISLP-DENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK-NYSGAELEGVA 446 (594)
Q Consensus 369 ~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P-~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~-g~sg~dl~~l~ 446 (594)
+|||||||||.|||+|+||||||+.++++++ |.+.+..||+..++++. +.+++|+.++|+.++ .|+|||+.++|
T Consensus 813 FViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFk----LdedVdL~eiAk~cp~~~TGADlYsLC 888 (953)
T KOG0736|consen 813 FVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFK----LDEDVDLVEIAKKCPPNMTGADLYSLC 888 (953)
T ss_pred EEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHcc----CCCCcCHHHHHhhCCcCCchhHHHHHH
Confidence 9999999999999999999999999999999 78899999999999998 889999999999985 79999999999
Q ss_pred HHHHHHHHHhccCcccCC----CCcccchhhcchhHHHHHHHhcccCC
Q 007661 447 KSAVSFALNRQLSMDDLT----KPVDEESIKVTMDDFLHALYEIVPAF 490 (594)
Q Consensus 447 ~~A~~~a~~r~~~~~~~~----~~~~~~~~~vt~~df~~al~~~~ps~ 490 (594)
..|.+.|++|.+...+.. +........|+++||.++++++.|+.
T Consensus 889 SdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSv 936 (953)
T KOG0736|consen 889 SDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSV 936 (953)
T ss_pred HHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcc
Confidence 999999999977644332 23345668899999999999999985
No 9
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-48 Score=363.13 Aligned_cols=305 Identities=30% Similarity=0.513 Sum_probs=262.6
Q ss_pred CcEEEEEEcCeeEEEEEEEeeecCccccccccceeEcCCcEEEEEecCCCceeeecccCCccccc---cccCccccccCC
Q 007661 144 GQRVVFEYHGNNYIFTVNGAAVEGQEKSNALERGIITNETYFVFEASNDSGIKIVNQREGANSNI---FRHKEFNLQSLG 220 (594)
Q Consensus 144 g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 220 (594)
+..|+-...|.+|+++|.++ .++-++.+++.+.+.+-....+.+.+.+...+-++ -..|+++|.|
T Consensus 89 nt~ivgsttgsny~vrilst----------idrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~d-- 156 (408)
T KOG0727|consen 89 NTAIVGSTTGSNYYVRILST----------IDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYAD-- 156 (408)
T ss_pred cCceeecccCCceEEeehhh----------hhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccc--
Confidence 44445556677888888876 45677788888777666655555555432211111 1249999999
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhH
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETE 300 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~ 300 (594)
||||+-|++++ |+++++|+.|.+++++.|+.||+|+|||||||||||++++++|+... ..++.+.+++++.+|.|+..
T Consensus 157 iggld~qkqei-reavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~-a~firvvgsefvqkylgegp 234 (408)
T KOG0727|consen 157 IGGLDVQKQEI-REAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT-AAFIRVVGSEFVQKYLGEGP 234 (408)
T ss_pred cccchhhHHHH-HHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc-hheeeeccHHHHHHHhccCc
Confidence 99999999999 99999999999999999999999999999999999999999999974 55778999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCC-CchHHHHHHHHHHhhcCccccCcEEEEEeeCCccc
Q 007661 301 KNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDG-TGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDM 379 (594)
Q Consensus 301 ~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~-~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ 379 (594)
+.+|++|..|+.+.| +||||||+|+++.+|...+.+ ....++++-.||++|||+....|+-||.+||+.+.
T Consensus 235 rmvrdvfrlakenap--------siifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradt 306 (408)
T KOG0727|consen 235 RMVRDVFRLAKENAP--------SIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADT 306 (408)
T ss_pred HHHHHHHHHHhccCC--------cEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccc
Confidence 999999999999865 499999999999998765432 33566788899999999999999999999999999
Q ss_pred ccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccC
Q 007661 380 LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLS 459 (594)
Q Consensus 380 ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~ 459 (594)
|||+|+||||+++.|+||+||..+++-++...+.+|. +.+++|++.+..+-+..+|+||.++|++|.+.|.+.
T Consensus 307 ldpallrpgrldrkiefplpdrrqkrlvf~titskm~----ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~--- 379 (408)
T KOG0727|consen 307 LDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMN----LSDEVDLEDLVARPDKISGADINAICQEAGMLAVRE--- 379 (408)
T ss_pred cCHhhcCCccccccccCCCCchhhhhhhHHhhhhccc----CCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHh---
Confidence 9999999999999999999999999999999999998 889999999999999999999999999999999874
Q ss_pred cccCCCCcccchhhcchhHHHHHHHhcc
Q 007661 460 MDDLTKPVDEESIKVTMDDFLHALYEIV 487 (594)
Q Consensus 460 ~~~~~~~~~~~~~~vt~~df~~al~~~~ 487 (594)
....+...||+++.....
T Consensus 380 ----------nryvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 380 ----------NRYVVLQKDFEKAYKTVV 397 (408)
T ss_pred ----------cceeeeHHHHHHHHHhhc
Confidence 345688999999987653
No 10
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-47 Score=404.29 Aligned_cols=424 Identities=24% Similarity=0.293 Sum_probs=313.2
Q ss_pred HHHHHHHHhc-cCcccCCcEEEEEEcCe------------------eEEEEEEEeeecCccccccccceeE-cCCcEEEE
Q 007661 128 LANQLRKRFI-NQVMTAGQRVVFEYHGN------------------NYIFTVNGAAVEGQEKSNALERGII-TNETYFVF 187 (594)
Q Consensus 128 ~~~~~~~~~~-~~~~~~g~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~~~~~~~~~-~~~t~~~~ 187 (594)
....++..|. .++++.|+.+.+.++.. .++++|.+.+|. + ....++ ...|.+..
T Consensus 306 ~~~~l~~~f~t~ril~~gdvf~i~~~~~~~~~~~~~~l~l~~~~d~~v~~~v~~~ep~-----~-~~~~~i~~~~T~lv~ 379 (953)
T KOG0736|consen 306 IDVVLKKHFKTPRILQSGDVFCIPINSQMANLNGYPELPLWRETDFLVYKKVIEAEPG-----N-ESAYIIDTNHTSLVL 379 (953)
T ss_pred HHHHHHHHhCcceeeecCCEEEEeehhhhcccccchhhHhhhhccceeEEEEeecCCC-----c-cceEEEcCCCceEEE
Confidence 3333444443 48999999999887543 367888888771 0 112233 33455554
Q ss_pred EecCCCceeeecccCCccccccccCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcH
Q 007661 188 EASNDSGIKIVNQREGANSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGK 267 (594)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGK 267 (594)
.....+.+...+... . .-++|-. .-+.+..+.++ .++..|-+.|. ..+++-...+||+|+|||||
T Consensus 380 ~~~~ss~~~~lps~~----~----~l~n~~~--~~~~~~~~~~l--~~vl~p~~~~s---~~~~~~~~~vLLhG~~g~GK 444 (953)
T KOG0736|consen 380 VGATSSRVPLLPSSL----S----TLWNSLS--PPGLEAKVLEL--VAVLSPQKQPS---GALLTLNPSVLLHGPPGSGK 444 (953)
T ss_pred ccccccCCcCCChhh----H----HHhccCC--CccchHHHHHH--HHHhCcccCcc---hhccccceEEEEeCCCCCCh
Confidence 443333211111110 0 1223333 45555555544 34444444442 23445556799999999999
Q ss_pred HHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCch
Q 007661 268 TLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGV 347 (594)
Q Consensus 268 T~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~ 347 (594)
|++++++|.++ +.+++.++|.++.....+.++..+...|..|+... |+|||+-++|.+.-..++..+ --
T Consensus 445 ~t~V~~vas~l-g~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~--------pavifl~~~dvl~id~dgged--~r 513 (953)
T KOG0736|consen 445 TTVVRAVASEL-GLHLLEVDCYELVAESASHTETKLQAIFSRARRCS--------PAVLFLRNLDVLGIDQDGGED--AR 513 (953)
T ss_pred HHHHHHHHHHh-CCceEeccHHHHhhcccchhHHHHHHHHHHHhhcC--------ceEEEEeccceeeecCCCchh--HH
Confidence 99999999999 68889999999999999999999999999999985 559999999999744333111 11
Q ss_pred HHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccH
Q 007661 348 HDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNL 427 (594)
Q Consensus 348 ~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l 427 (594)
....++.++..=+.......++||++|++.+.|++.+++ .|..+|.++.|++++|.+||+.++.... +..++.+
T Consensus 514 l~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~----~n~~v~~ 587 (953)
T KOG0736|consen 514 LLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLP----LNQDVNL 587 (953)
T ss_pred HHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccc----cchHHHH
Confidence 223344454421233356689999999999999999998 7777999999999999999999988766 6788999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcc---c----CCCCcccchhhcchhHHHHHHHhcccCC----Cc-CCc
Q 007661 428 QELAARTKNYSGAELEGVAKSAVSFALNRQLSMD---D----LTKPVDEESIKVTMDDFLHALYEIVPAF----GA-STD 495 (594)
Q Consensus 428 ~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~---~----~~~~~~~~~~~vt~~df~~al~~~~ps~----~~-~~~ 495 (594)
..++.+|.||+-+|+++++..+...+..|..... . -...+......++++||.+++.+.+..+ +. ..+
T Consensus 588 k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIP 667 (953)
T KOG0736|consen 588 KQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIP 667 (953)
T ss_pred HHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCC
Confidence 9999999999999999998877444443322211 0 0112233447899999999999765443 22 368
Q ss_pred cccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc---c
Q 007661 496 DLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM---I 572 (594)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~---v 572 (594)
.+.|.+++|+.+++..+.+.++.++++++.+ ..+.+++.|||||||||||||+||||+|+|+.++|++|||||++ |
T Consensus 668 nV~WdDVGGLeevK~eIldTIqlPL~hpeLf-ssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYV 746 (953)
T KOG0736|consen 668 NVSWDDVGGLEEVKTEILDTIQLPLKHPELF-SSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYV 746 (953)
T ss_pred ccchhcccCHHHHHHHHHHHhcCcccChhhh-hccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHh
Confidence 8999999999999999999999999999887 45778899999999999999999999999999999999999994 9
Q ss_pred ccccchhhhHHHHHHHhhhcCC
Q 007661 573 GLHESTKCAQIVKVSECQFSGS 594 (594)
Q Consensus 573 G~sE~~~~~~ir~~F~~A~~~~ 594 (594)
||||.| +|+||++||.++
T Consensus 747 GqSE~N----VR~VFerAR~A~ 764 (953)
T KOG0736|consen 747 GQSEEN----VREVFERARSAA 764 (953)
T ss_pred cchHHH----HHHHHHHhhccC
Confidence 999999 999999999875
No 11
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-47 Score=359.47 Aligned_cols=286 Identities=34% Similarity=0.562 Sum_probs=249.2
Q ss_pred ccceeEcCCcEEEEEecCCCceeeecccCCcccc---ccccCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcC
Q 007661 174 LERGIITNETYFVFEASNDSGIKIVNQREGANSN---IFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLG 250 (594)
Q Consensus 174 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g 250 (594)
.+..-+++++.+.+.......-++.+..-.+--+ +-+.|+-+|+- ||||++|+++| ++.+++|+.|||+|+.+|
T Consensus 101 i~i~~~~~~~rVaLR~dsY~lhkiLpnKvDpLVsLMmVeKvPDStYeM--iGgLd~QIkeI-kEVIeLPvKHPELF~aLG 177 (404)
T KOG0728|consen 101 IDISDVTPSSRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEM--IGGLDKQIKEI-KEVIELPVKHPELFEALG 177 (404)
T ss_pred CcHhhcCCcceEEEeccchHHHHhcccccchhhHHHhhhhCCccHHHH--hccHHHHHHHH-HHHHhccccCHHHHHhcC
Confidence 4455677788888776665555555443221111 12458889998 99999999999 999999999999999999
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEcc
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 330 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDE 330 (594)
+..|+|+|||||||||||++|+++|+.. +..++.+++++++.+|+|+..+.+|++|-.|+.++|+ |||+||
T Consensus 178 IaQPKGvlLygppgtGktLlaraVahht-~c~firvsgselvqk~igegsrmvrelfvmarehaps--------iifmde 248 (404)
T KOG0728|consen 178 IAQPKGVLLYGPPGTGKTLLARAVAHHT-DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS--------IIFMDE 248 (404)
T ss_pred CCCCcceEEecCCCCchhHHHHHHHhhc-ceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCc--------eEeeec
Confidence 9999999999999999999999999997 4567889999999999999999999999999999754 999999
Q ss_pred chhhhccCCCCCC-CCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHH
Q 007661 331 IDAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQ 409 (594)
Q Consensus 331 id~l~~~~~~~~~-~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~ 409 (594)
||++...|..+.. +....++..-.||+++||++...++-||.+||+.+-+||+|+||||+|+.|+||+|+++.|.+||+
T Consensus 249 idsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilk 328 (404)
T KOG0728|consen 249 IDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILK 328 (404)
T ss_pred ccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHH
Confidence 9999988765433 334556667789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhccc
Q 007661 410 IHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVP 488 (594)
Q Consensus 410 ~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~p 488 (594)
+|.++|+ +...+++..+|+...|-+|++++++|.+|.++|++. ....+|.+||+-|+..+..
T Consensus 329 ihsrkmn----l~rgi~l~kiaekm~gasgaevk~vcteagm~alre-------------rrvhvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 329 IHSRKMN----LTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRE-------------RRVHVTQEDFEMAVAKVMQ 390 (404)
T ss_pred Hhhhhhc----hhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHH-------------hhccccHHHHHHHHHHHHh
Confidence 9999998 778899999999999999999999999999999973 3578999999999988743
No 12
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-47 Score=366.63 Aligned_cols=316 Identities=30% Similarity=0.514 Sum_probs=260.8
Q ss_pred HHHHhccCcccCCcE---------EEEEEcCeeEEEEEEEeeecCccccccccceeEcCCcEEEEEecCCCceeeecccC
Q 007661 132 LRKRFINQVMTAGQR---------VVFEYHGNNYIFTVNGAAVEGQEKSNALERGIITNETYFVFEASNDSGIKIVNQRE 202 (594)
Q Consensus 132 ~~~~~~~~~~~~g~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 202 (594)
....+.|.++++|.. |+..--|..+++.+.+. .+.-++.++..|.+.....+.+.....+.
T Consensus 98 ~vd~lRGtPmsvg~leEiidd~haivst~~g~e~Yv~IlSf----------VdKdlLepgcsvll~~k~~avvGvL~d~~ 167 (440)
T KOG0726|consen 98 KVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEYYVSILSF----------VDKDLLEPGCSVLLNHKVHAVVGVLQDDT 167 (440)
T ss_pred HHHhhcCCccccccHHHHhcCCceEEecccCchheeeeeee----------ccHhhcCCCCeeeeccccceEEEEeccCC
Confidence 345566777766642 22222334455555554 23445666666666666555555544332
Q ss_pred Cccccc---cccCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 203 GANSNI---FRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 203 ~~~~~~---~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
.+.-++ -+.|.-+|.| ||||+.|+++| ++++++|+-|||+++.+|++||+||+|||+||||||+||+++|+..+
T Consensus 168 dpmv~vmK~eKaP~Ety~d--iGGle~QiQEi-KEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTS 244 (440)
T KOG0726|consen 168 DPMVSVMKVEKAPQETYAD--IGGLESQIQEI-KESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTS 244 (440)
T ss_pred CccceeeecccCchhhhcc--cccHHHHHHHH-HHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccc
Confidence 222222 2357888998 99999999999 99999999999999999999999999999999999999999999986
Q ss_pred CCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCC-CchHHHHHHHHHHh
Q 007661 280 GMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDG-TGVHDSIVNQLLTK 358 (594)
Q Consensus 280 ~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~-~~~~~~~v~~Ll~~ 358 (594)
+. |+.+-+++++.+|.|+..+.+|++|+-|..++| +|+||||||++..+|..++++ ....++.+-.||++
T Consensus 245 AT-FlRvvGseLiQkylGdGpklvRqlF~vA~e~ap--------SIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQ 315 (440)
T KOG0726|consen 245 AT-FLRVVGSELIQKYLGDGPKLVRELFRVAEEHAP--------SIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQ 315 (440)
T ss_pred hh-hhhhhhHHHHHHHhccchHHHHHHHHHHHhcCC--------ceEEeehhhhhccccccCCCccHHHHHHHHHHHHHh
Confidence 55 456779999999999999999999999999875 499999999999998765543 23344555689999
Q ss_pred hcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCC
Q 007661 359 IDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYS 438 (594)
Q Consensus 359 ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~s 438 (594)
+||+.++++|-||.+||+.+.|||+|.||||+|+.|+|+.||+..+..|+.+|+.+|. +..+++++.+...-+.+|
T Consensus 316 ldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mt----l~~dVnle~li~~kddlS 391 (440)
T KOG0726|consen 316 LDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMT----LAEDVNLEELIMTKDDLS 391 (440)
T ss_pred ccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccc----hhccccHHHHhhcccccc
Confidence 9999999999999999999999999999999999999999999999999999999998 889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhc
Q 007661 439 GAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (594)
Q Consensus 439 g~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~ 486 (594)
|+||.++|.+|.+.|++. ....++++||.+|.+.+
T Consensus 392 GAdIkAictEaGllAlRe-------------rRm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 392 GADIKAICTEAGLLALRE-------------RRMKVTMEDFKKAKEKV 426 (440)
T ss_pred cccHHHHHHHHhHHHHHH-------------HHhhccHHHHHHHHHHH
Confidence 999999999999999974 35789999999999877
No 13
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-46 Score=350.57 Aligned_cols=248 Identities=38% Similarity=0.594 Sum_probs=227.0
Q ss_pred cCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecch
Q 007661 211 HKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 290 (594)
Q Consensus 211 ~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~ 290 (594)
.|.-+|+| ||||++|++++ -+++.+|+.|++.|+++|++||+|+|+|||||||||++||++|...++. +.-+-++.
T Consensus 165 kPtE~YsD--iGGldkQIqEL-vEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aT-FLKLAgPQ 240 (424)
T KOG0652|consen 165 KPTEQYSD--IGGLDKQIQEL-VEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNAT-FLKLAGPQ 240 (424)
T ss_pred CCcccccc--cccHHHHHHHH-HHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccch-HHHhcchH
Confidence 37888999 99999999999 7999999999999999999999999999999999999999999998654 45578999
Q ss_pred hhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCC-CCCchHHHHHHHHHHhhcCccccCcEE
Q 007661 291 VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTR-DGTGVHDSIVNQLLTKIDGVESLNNVL 369 (594)
Q Consensus 291 l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~-~~~~~~~~~v~~Ll~~ld~~~~~~~v~ 369 (594)
++..|+|+..+.+|..|..|+... |+||||||+|++..+|..+. .+....++.+-.||+++||+.+..++-
T Consensus 241 LVQMfIGdGAkLVRDAFaLAKEka--------P~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vK 312 (424)
T KOG0652|consen 241 LVQMFIGDGAKLVRDAFALAKEKA--------PTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVK 312 (424)
T ss_pred HHhhhhcchHHHHHHHHHHhhccC--------CeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceE
Confidence 999999999999999999999876 56999999999999886543 233445566678999999999999999
Q ss_pred EEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHH
Q 007661 370 LIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSA 449 (594)
Q Consensus 370 vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A 449 (594)
||++||+.+-+||+|+|.||+++.|+||.|+++.|..|+++|.++|. ..+|+++++||+.|++|+|++.+++|-+|
T Consensus 313 viAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMn----v~~DvNfeELaRsTddFNGAQcKAVcVEA 388 (424)
T KOG0652|consen 313 VIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMN----VSDDVNFEELARSTDDFNGAQCKAVCVEA 388 (424)
T ss_pred EEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcC----CCCCCCHHHHhhcccccCchhheeeehhh
Confidence 99999999999999999999999999999999999999999999998 78999999999999999999999999999
Q ss_pred HHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcc
Q 007661 450 VSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 487 (594)
Q Consensus 450 ~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 487 (594)
.+.|++|. ...++.+||++++.++.
T Consensus 389 GMiALRr~-------------atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 389 GMIALRRG-------------ATEVTHEDFMEGILEVQ 413 (424)
T ss_pred hHHHHhcc-------------cccccHHHHHHHHHHHH
Confidence 99999974 45789999999998874
No 14
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-45 Score=345.20 Aligned_cols=249 Identities=36% Similarity=0.581 Sum_probs=225.8
Q ss_pred cCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecch
Q 007661 211 HKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 290 (594)
Q Consensus 211 ~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~ 290 (594)
.|+++|.| +||+++|++.+ |+.+++|+.|||.|-++|+.||+|||||||||||||+.||++|+..+ ..++.+-+++
T Consensus 171 kpdvty~d--vggckeqiekl-revve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd-acfirvigse 246 (435)
T KOG0729|consen 171 KPDVTYSD--VGGCKEQIEKL-REVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD-ACFIRVIGSE 246 (435)
T ss_pred CCCccccc--ccchHHHHHHH-HHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC-ceEEeehhHH
Confidence 49999999 99999999999 99999999999999999999999999999999999999999999985 4567788999
Q ss_pred hhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCC-CCCCchHHHHHHHHHHhhcCccccCcEE
Q 007661 291 VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGST-RDGTGVHDSIVNQLLTKIDGVESLNNVL 369 (594)
Q Consensus 291 l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~-~~~~~~~~~~v~~Ll~~ld~~~~~~~v~ 369 (594)
++.+|+|+..+.+|++|+.|+... .|||||||||++...|... .++....++.+-.|++++||+..++|+-
T Consensus 247 lvqkyvgegarmvrelf~martkk--------aciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnik 318 (435)
T KOG0729|consen 247 LVQKYVGEGARMVRELFEMARTKK--------ACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIK 318 (435)
T ss_pred HHHHHhhhhHHHHHHHHHHhcccc--------eEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeE
Confidence 999999999999999999998875 4699999999999877543 2333445666677999999999999999
Q ss_pred EEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHH
Q 007661 370 LIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSA 449 (594)
Q Consensus 370 vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A 449 (594)
|+.+||+|+.|||+|+||||+++.++|.+||.+.|.+||++|.+.|. ...++-++-||..+.+-+|++|.++|.+|
T Consensus 319 vlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksms----verdir~ellarlcpnstgaeirsvctea 394 (435)
T KOG0729|consen 319 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMS----VERDIRFELLARLCPNSTGAEIRSVCTEA 394 (435)
T ss_pred EEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccc----cccchhHHHHHhhCCCCcchHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998 67788999999999999999999999999
Q ss_pred HHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhccc
Q 007661 450 VSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVP 488 (594)
Q Consensus 450 ~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~p 488 (594)
.++|++. .....|..||.+|+.++..
T Consensus 395 gmfaira-------------rrk~atekdfl~av~kvvk 420 (435)
T KOG0729|consen 395 GMFAIRA-------------RRKVATEKDFLDAVNKVVK 420 (435)
T ss_pred hHHHHHH-------------HhhhhhHHHHHHHHHHHHH
Confidence 9999863 2345789999999988754
No 15
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-44 Score=355.79 Aligned_cols=262 Identities=32% Similarity=0.497 Sum_probs=231.6
Q ss_pred ccCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecc
Q 007661 210 RHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGP 289 (594)
Q Consensus 210 ~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~ 289 (594)
++|++.|+| |.||.+.++-| ++++.+|+.-|++|+. ..+|-+|||++||||||||+||||+|.+++ ..|+.|+.+
T Consensus 205 ~np~ikW~D--Iagl~~AK~lL-~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~-tTFFNVSss 279 (491)
T KOG0738|consen 205 RNPNIKWDD--IAGLHEAKKLL-KEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECG-TTFFNVSSS 279 (491)
T ss_pred cCCCcChHh--hcchHHHHHHH-HHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhc-CeEEEechh
Confidence 458899999 99999987755 9999999999999997 368899999999999999999999999985 667789999
Q ss_pred hhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccC-c-
Q 007661 290 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLN-N- 367 (594)
Q Consensus 290 ~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~-~- 367 (594)
.+.+||-|++|+.+|-+|+.|+.++|+ +|||||||+||.+|++.. .-+..+++-+.||-+|||+.... +
T Consensus 280 tltSKwRGeSEKlvRlLFemARfyAPS--------tIFiDEIDslcs~RG~s~-EHEaSRRvKsELLvQmDG~~~t~e~~ 350 (491)
T KOG0738|consen 280 TLTSKWRGESEKLVRLLFEMARFYAPS--------TIFIDEIDSLCSQRGGSS-EHEASRRVKSELLVQMDGVQGTLENS 350 (491)
T ss_pred hhhhhhccchHHHHHHHHHHHHHhCCc--------eeehhhHHHHHhcCCCcc-chhHHHHHHHHHHHHhhccccccccc
Confidence 999999999999999999999999755 999999999999998763 45678899999999999986533 3
Q ss_pred --EEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHH
Q 007661 368 --VLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGV 445 (594)
Q Consensus 368 --v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l 445 (594)
|+|+|+||-|++||+||+| ||+..|+||+||.++|..+|++.++... +.++++++.|++.++||+|+||.++
T Consensus 351 k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~----~~~~~~~~~lae~~eGySGaDI~nv 424 (491)
T KOG0738|consen 351 KVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVE----LDDPVNLEDLAERSEGYSGADITNV 424 (491)
T ss_pred eeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhcccc----CCCCccHHHHHHHhcCCChHHHHHH
Confidence 8999999999999999999 9999999999999999999999998877 7789999999999999999999999
Q ss_pred HHHHHHHHHHhccCcccCCC--Cc--ccchhhcchhHHHHHHHhcccCCC
Q 007661 446 AKSAVSFALNRQLSMDDLTK--PV--DEESIKVTMDDFLHALYEIVPAFG 491 (594)
Q Consensus 446 ~~~A~~~a~~r~~~~~~~~~--~~--~~~~~~vt~~df~~al~~~~ps~~ 491 (594)
|++|.+.+++|.+....-.+ .. ..-...++++||+.|+..+.|+..
T Consensus 425 CreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 425 CREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred HHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCC
Confidence 99999999998765332111 11 112256999999999999999863
No 16
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=6.9e-43 Score=330.29 Aligned_cols=307 Identities=29% Similarity=0.455 Sum_probs=254.7
Q ss_pred cHHHHHHHHHHHhccCcccCCcEEEEEEcCe---eEEEEEEEeeecCccccccccceeEcCCcEEEEEecCCCceeeecc
Q 007661 124 DAVLLANQLRKRFINQVMTAGQRVVFEYHGN---NYIFTVNGAAVEGQEKSNALERGIITNETYFVFEASNDSGIKIVNQ 200 (594)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 200 (594)
+.+.+.-|.+.+|.|.++..|+.+ |+.. .|-|+|.++.|. +.|++ .+|.|.+.......
T Consensus 49 n~~~F~~YArdQW~Ge~v~eg~yl---FD~~~~pdyAfkvI~~~P~--------~~~i~-~st~i~vl~~~~~~------ 110 (368)
T COG1223 49 NPEVFNIYARDQWLGEVVREGDYL---FDTRMFPDYAFKVIRVVPS--------GGGII-TSTTIFVLETPREE------ 110 (368)
T ss_pred CHHHHHHHHHHhhcceeeecCceE---eecccccccceeEEEEeCC--------CCcee-cceEEEEecCcchh------
Confidence 567788999999999999999965 4433 478999999992 34444 44444443332211
Q ss_pred cCCccccccccCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCC
Q 007661 201 REGANSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG 280 (594)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~ 280 (594)
...++ ++++|+| +.|.+..++.. +.+...+.+|+.|.. ..|++||+|||||||||++||++|++. .
T Consensus 111 ----~~e~~--~~it~dd--ViGqEeAK~kc--rli~~yLenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~-k 176 (368)
T COG1223 111 ----DREII--SDITLDD--VIGQEEAKRKC--RLIMEYLENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEA-K 176 (368)
T ss_pred ----hhhhh--ccccHhh--hhchHHHHHHH--HHHHHHhhChHHhcc---cCcceeEEECCCCccHHHHHHHHhccc-C
Confidence 11122 7899999 99999988776 556666778877655 589999999999999999999999997 5
Q ss_pred CCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhc
Q 007661 281 MEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKID 360 (594)
Q Consensus 281 ~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld 360 (594)
.+++.++.++++++|+|+..+.++++|+.|++.+ |||+||||+|+++-.|..+. -.+....++|.||+.||
T Consensus 177 vp~l~vkat~liGehVGdgar~Ihely~rA~~~a--------PcivFiDE~DAiaLdRryQe-lRGDVsEiVNALLTelD 247 (368)
T COG1223 177 VPLLLVKATELIGEHVGDGARRIHELYERARKAA--------PCIVFIDELDAIALDRRYQE-LRGDVSEIVNALLTELD 247 (368)
T ss_pred CceEEechHHHHHHHhhhHHHHHHHHHHHHHhcC--------CeEEEehhhhhhhhhhhHHH-hcccHHHHHHHHHHhcc
Confidence 7888999999999999999999999999999875 67999999999987665432 22446779999999999
Q ss_pred CccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHH
Q 007661 361 GVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGA 440 (594)
Q Consensus 361 ~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~ 440 (594)
|+..+.+|+.||+||+|+.||+++++ ||+.+|+|.+|+.++|.+|++.+.++++ +.-+.+++.+++.|.|+||+
T Consensus 248 gi~eneGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~P----lpv~~~~~~~~~~t~g~SgR 321 (368)
T COG1223 248 GIKENEGVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFP----LPVDADLRYLAAKTKGMSGR 321 (368)
T ss_pred CcccCCceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCC----CccccCHHHHHHHhCCCCch
Confidence 99999999999999999999999998 9999999999999999999999999998 66788899999999999999
Q ss_pred HHH-HHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcccCC
Q 007661 441 ELE-GVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAF 490 (594)
Q Consensus 441 dl~-~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ps~ 490 (594)
||. .+++.|.+.|+. ++...|+.+|++.|+++.++..
T Consensus 322 dikekvlK~aLh~Ai~-------------ed~e~v~~edie~al~k~r~~r 359 (368)
T COG1223 322 DIKEKVLKTALHRAIA-------------EDREKVEREDIEKALKKERKRR 359 (368)
T ss_pred hHHHHHHHHHHHHHHH-------------hchhhhhHHHHHHHHHhhcccc
Confidence 995 577888888875 3457899999999999765543
No 17
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-43 Score=360.34 Aligned_cols=243 Identities=34% Similarity=0.516 Sum_probs=222.6
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
.+++|+| +-|+|+.++++ ++. ...++.|+.|.+||-+-|+||||.||||||||+|||++|.+. +.++++..++++
T Consensus 299 ~nv~F~d--VkG~DEAK~EL-eEi-VefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA-~VPFF~~sGSEF 373 (752)
T KOG0734|consen 299 KNVTFED--VKGVDEAKQEL-EEI-VEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA-GVPFFYASGSEF 373 (752)
T ss_pred ccccccc--ccChHHHHHHH-HHH-HHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc-CCCeEeccccch
Confidence 5789999 99999999999 554 467899999999999999999999999999999999999996 688899999999
Q ss_pred hhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEE
Q 007661 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLI 371 (594)
Q Consensus 292 ~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI 371 (594)
-..|+|...+++|++|++|+..+ ||||||||||++..+|..... ...+..++|||.+|||+..+..|+||
T Consensus 374 dEm~VGvGArRVRdLF~aAk~~A--------PcIIFIDEiDavG~kR~~~~~--~y~kqTlNQLLvEmDGF~qNeGiIvi 443 (752)
T KOG0734|consen 374 DEMFVGVGARRVRDLFAAAKARA--------PCIIFIDEIDAVGGKRNPSDQ--HYAKQTLNQLLVEMDGFKQNEGIIVI 443 (752)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--------CeEEEEechhhhcccCCccHH--HHHHHHHHHHHHHhcCcCcCCceEEE
Confidence 99999999999999999999875 679999999999998876432 36788999999999999999999999
Q ss_pred EeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHH
Q 007661 372 GMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVS 451 (594)
Q Consensus 372 ~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~ 451 (594)
|+||.|+.||+||.||||||++|.+|.||..+|.+||+.|++++. +..++|+.-||+-|.||+|+||++++..|+.
T Consensus 444 gATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~----~~~~VD~~iiARGT~GFsGAdLaNlVNqAAl 519 (752)
T KOG0734|consen 444 GATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIP----LDEDVDPKIIARGTPGFSGADLANLVNQAAL 519 (752)
T ss_pred eccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCC----cccCCCHhHhccCCCCCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987 6789999999999999999999999999998
Q ss_pred HHHHhccCcccCCCCcccchhhcchhHHHHHHHhc
Q 007661 452 FALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (594)
Q Consensus 452 ~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~ 486 (594)
+|... ....|+|.+++.|-.++
T Consensus 520 kAa~d-------------ga~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 520 KAAVD-------------GAEMVTMKHLEFAKDRI 541 (752)
T ss_pred HHHhc-------------CcccccHHHHhhhhhhe
Confidence 88753 34568888888877665
No 18
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-43 Score=367.54 Aligned_cols=319 Identities=19% Similarity=0.266 Sum_probs=264.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhCCC---CcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEE
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGM---EPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIF 328 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~~~---~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~i 328 (594)
-.+.+|||+||+|||||.|++++++++... ++.+++|+.+-.+......+.++.+|.++.+++|+ ||++
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PS--------iIvL 500 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPS--------IIVL 500 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCc--------EEEE
Confidence 345689999999999999999999998532 45678999998887888889999999999999755 9999
Q ss_pred ccchhhhccCCCCCCCCchHHHHHHHHHHh-hcCcc-ccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHH
Q 007661 329 DEIDAICKSRGSTRDGTGVHDSIVNQLLTK-IDGVE-SLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQ 406 (594)
Q Consensus 329 DEid~l~~~~~~~~~~~~~~~~~v~~Ll~~-ld~~~-~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~ 406 (594)
|++|.|+...+...+..++....+..+++. ++.+. .+..+.+||+.+....|+|.|.++++|..++.++.|+..+|.+
T Consensus 501 Ddld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~ 580 (952)
T KOG0735|consen 501 DDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKE 580 (952)
T ss_pred cchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHH
Confidence 999999974333333233344444444433 23222 3345799999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhc
Q 007661 407 ILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (594)
Q Consensus 407 IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~ 486 (594)
||+..+++... ....-|++-++..|+||...|+..++++|.+.|+...+. +... .+|.++|.++++.+
T Consensus 581 IL~~~~s~~~~---~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris--------~~~k-lltke~f~ksL~~F 648 (952)
T KOG0735|consen 581 ILTTIFSKNLS---DITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERIS--------NGPK-LLTKELFEKSLKDF 648 (952)
T ss_pred HHHHHHHhhhh---hhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhc--------cCcc-cchHHHHHHHHHhc
Confidence 99998876541 112235666999999999999999999999999843221 1222 78999999999999
Q ss_pred ccCCCcC-----CccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCC
Q 007661 487 VPAFGAS-----TDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFP 561 (594)
Q Consensus 487 ~ps~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~ 561 (594)
.|..... ...+.|.+++|+.+.++.+.+++.|+.++++.|...+.+-+.|||||||||||||.||.++|..++++
T Consensus 649 ~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~ 728 (952)
T KOG0735|consen 649 VPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR 728 (952)
T ss_pred ChHHhhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee
Confidence 9875433 23488899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccc---cccccchhhhHHHHHHHhhhcCC
Q 007661 562 FVKIISAESM---IGLHESTKCAQIVKVSECQFSGS 594 (594)
Q Consensus 562 fi~v~~~e~~---vG~sE~~~~~~ir~~F~~A~~~~ 594 (594)
||+|||||++ +|.||+| +|++|.+|++++
T Consensus 729 fisvKGPElL~KyIGaSEq~----vR~lF~rA~~a~ 760 (952)
T KOG0735|consen 729 FISVKGPELLSKYIGASEQN----VRDLFERAQSAK 760 (952)
T ss_pred EEEecCHHHHHHHhcccHHH----HHHHHHHhhccC
Confidence 9999999995 9999999 999999999874
No 19
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=7e-42 Score=360.18 Aligned_cols=287 Identities=29% Similarity=0.498 Sum_probs=247.5
Q ss_pred ccceeEcCCcEEEEEecCCCceeeecccCCc---cccccccCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcC
Q 007661 174 LERGIITNETYFVFEASNDSGIKIVNQREGA---NSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLG 250 (594)
Q Consensus 174 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g 250 (594)
.+...+.+++.|.+.......+...+.+..+ ...+.+.|+++|+| |||++.++++| ++++..|+.+|++|.++|
T Consensus 99 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~d--igGl~~~k~~l-~~~v~~pl~~~~~~~~~G 175 (398)
T PTZ00454 99 LNRELLKPNASVALHRHSHAVVDILPPEADSSIQLLQMSEKPDVTYSD--IGGLDIQKQEI-REAVELPLTCPELYEQIG 175 (398)
T ss_pred cCHhhCCCCCEEEeeccchhHHHhccccccchhhhhcccCCCCCCHHH--cCCHHHHHHHH-HHHHHHHhcCHHHHHhcC
Confidence 3456677888888877666655555444322 12233469999999 99999999999 999999999999999999
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEcc
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 330 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDE 330 (594)
+.+|+|+|||||||||||++|+++|+++. ..++.+.++++..+|.|+.+..++++|..|.... |+||||||
T Consensus 176 l~~pkgvLL~GppGTGKT~LAkalA~~l~-~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~--------P~ILfIDE 246 (398)
T PTZ00454 176 IDPPRGVLLYGPPGTGKTMLAKAVAHHTT-ATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENA--------PSIIFIDE 246 (398)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhcC-CCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcC--------CeEEEEEC
Confidence 99999999999999999999999999984 5677888999999999999999999999998765 56999999
Q ss_pred chhhhccCCCCCC-CCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHH
Q 007661 331 IDAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQ 409 (594)
Q Consensus 331 id~l~~~~~~~~~-~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~ 409 (594)
+|.++.++..... ......+++.+|+..||++....++.||++||+++.||++++|+|||+..|+++.|+.++|.+||+
T Consensus 247 ID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~ 326 (398)
T PTZ00454 247 VDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQ 326 (398)
T ss_pred HhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHH
Confidence 9999987754322 223456788999999999988889999999999999999999999999999999999999999999
Q ss_pred HHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcccC
Q 007661 410 IHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPA 489 (594)
Q Consensus 410 ~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ps 489 (594)
.+++++. +..++++.+++..|+||+|+||.++|++|.+.|+++. ...|+++||.+|+..+...
T Consensus 327 ~~~~~~~----l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~-------------~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 327 TITSKMN----LSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN-------------RYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred HHHhcCC----CCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-------------CCccCHHHHHHHHHHHHhc
Confidence 9998876 6788999999999999999999999999999999763 3479999999999987543
No 20
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-41 Score=374.15 Aligned_cols=328 Identities=39% Similarity=0.566 Sum_probs=299.0
Q ss_pred ccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhcccc
Q 007661 238 SRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTR 317 (594)
Q Consensus 238 ~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~ 317 (594)
+++.+++.++.+++.++++++++||||||||+++++++.. .... ..++++++..+|.|+++..++.+|+.+....+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-- 77 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEF-LSINGPEILSKYVGESELRLRELFEEAEKLAP-- 77 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcc-cccCcchhhhhhhhHHHHHHHHHHHHHHHhCC--
Confidence 4678899999999999999999999999999999999999 5555 88999999999999999999999999999875
Q ss_pred CCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecC
Q 007661 318 GDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEIS 397 (594)
Q Consensus 318 ~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~ 397 (594)
+++++||+|.+++.+.. ......+.++.+++..++++. ...+.+++.+|++..+|+++++++||+.++.+.
T Consensus 78 ------~ii~~d~~~~~~~~~~~--~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 148 (494)
T COG0464 78 ------SIIFIDEIDALAPKRSS--DQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVN 148 (494)
T ss_pred ------CeEeechhhhcccCccc--cccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecC
Confidence 49999999999999877 344678899999999999999 455999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchh
Q 007661 398 LPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMD 477 (594)
Q Consensus 398 ~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~ 477 (594)
.|+...+.+|++.+...+. ...+.+...++..++||+++++..+++++.+.+..|.. ........++.+
T Consensus 149 ~~~~~~~~ei~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~-------~~~~~~~~~~~~ 217 (494)
T COG0464 149 LPDEAGRLEILQIHTRLMF----LGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI-------DLVGEYIGVTED 217 (494)
T ss_pred CCCHHHHHHHHHHHHhcCC----CcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh-------ccCcccccccHH
Confidence 9999999999999998887 44578999999999999999999999999999998863 112345679999
Q ss_pred HHHHHHHhcccC--CCcCCccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHH
Q 007661 478 DFLHALYEIVPA--FGASTDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAG 555 (594)
Q Consensus 478 df~~al~~~~ps--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA 555 (594)
++.++++.+.|+ .....+.+.|.+++|+...+..+.+.+.++..+.+.+.+.+.+|+.|+|||||||||||+|||++|
T Consensus 218 ~~~~~l~~~~~~~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava 297 (494)
T COG0464 218 DFEEALKKVLPSRGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVA 297 (494)
T ss_pred HHHHHHHhcCcccccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHH
Confidence 999999999884 555677899999999999999999999999999999888899999999999999999999999999
Q ss_pred hhcCCCEEEEeccccc---cccccchhhhHHHHHHHhhhcC
Q 007661 556 IDSDFPFVKIISAESM---IGLHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 556 ~~~~~~fi~v~~~e~~---vG~sE~~~~~~ir~~F~~A~~~ 593 (594)
++++.+|+++++|+++ +|+||++ ||++|++|++.
T Consensus 298 ~~~~~~fi~v~~~~l~sk~vGesek~----ir~~F~~A~~~ 334 (494)
T COG0464 298 LESRSRFISVKGSELLSKWVGESEKN----IRELFEKARKL 334 (494)
T ss_pred hhCCCeEEEeeCHHHhccccchHHHH----HHHHHHHHHcC
Confidence 9999999999999884 9999999 99999999965
No 21
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-42 Score=359.83 Aligned_cols=233 Identities=39% Similarity=0.650 Sum_probs=217.3
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
.++.|+| |||+.++++.+ ++.+++|.++|.+|.+.+++.+.|||||||||||||+||-++|... ...++.|.|+++
T Consensus 662 tgi~w~d--igg~~~~k~~l-~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~-~~~fisvKGPEl 737 (952)
T KOG0735|consen 662 TGIRWED--IGGLFEAKKVL-EEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS-NLRFISVKGPEL 737 (952)
T ss_pred CCCCcee--cccHHHHHHHH-HHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC-CeeEEEecCHHH
Confidence 4588998 99999988776 9999999999999999999999999999999999999999999997 467889999999
Q ss_pred hhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEE
Q 007661 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLI 371 (594)
Q Consensus 292 ~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI 371 (594)
++||+|.+|+++|++|+.|.... ||||||||+|+++|+||.. ++++.+++++|||++|||.+...+|.|+
T Consensus 738 L~KyIGaSEq~vR~lF~rA~~a~--------PCiLFFDEfdSiAPkRGhD--sTGVTDRVVNQlLTelDG~Egl~GV~i~ 807 (952)
T KOG0735|consen 738 LSKYIGASEQNVRDLFERAQSAK--------PCILFFDEFDSIAPKRGHD--STGVTDRVVNQLLTELDGAEGLDGVYIL 807 (952)
T ss_pred HHHHhcccHHHHHHHHHHhhccC--------CeEEEeccccccCcccCCC--CCCchHHHHHHHHHhhccccccceEEEE
Confidence 99999999999999999998764 7799999999999999874 5689999999999999999999999999
Q ss_pred EeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHH
Q 007661 372 GMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVS 451 (594)
Q Consensus 372 ~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~ 451 (594)
|+|.||++|||||+||||+|+.++-++|++.+|.+||+.+..... +..++|++.+|..|+||+|+||..|+..|.+
T Consensus 808 aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~----~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l 883 (952)
T KOG0735|consen 808 AATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLL----KDTDVDLECLAQKTDGFTGADLQSLLYNAQL 883 (952)
T ss_pred EecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccC----CccccchHHHhhhcCCCchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887665 6789999999999999999999999999999
Q ss_pred HHHHhccCccc
Q 007661 452 FALNRQLSMDD 462 (594)
Q Consensus 452 ~a~~r~~~~~~ 462 (594)
.|.++.+...+
T Consensus 884 ~avh~~l~~~~ 894 (952)
T KOG0735|consen 884 AAVHEILKRED 894 (952)
T ss_pred HHHHHHHHhcC
Confidence 99988765433
No 22
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=7e-40 Score=346.81 Aligned_cols=284 Identities=32% Similarity=0.520 Sum_probs=242.3
Q ss_pred cceeEcCCcEEEEEecCCCceeeecccCCc---cccccccCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCC
Q 007661 175 ERGIITNETYFVFEASNDSGIKIVNQREGA---NSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGI 251 (594)
Q Consensus 175 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~ 251 (594)
+...+.+++.+.+.......+...+.+..+ ...+-+.|..+|+| |||++++++++ ++++..++.+|+++..+|+
T Consensus 138 ~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~D--IgGl~~qi~~l-~e~v~lpl~~p~~~~~~gi 214 (438)
T PTZ00361 138 DKEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDKAPLESYAD--IGGLEQQIQEI-KEAVELPLTHPELYDDIGI 214 (438)
T ss_pred CHhhCCCCCEEEEcCCCCceEecCccccchhhhhcccccCCCCCHHH--hcCHHHHHHHH-HHHHHhhhhCHHHHHhcCC
Confidence 345567777777776655555555432111 11223458899999 99999999999 9999999999999999999
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccc
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEI 331 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEi 331 (594)
.+|+++|||||||||||++|+++|+++. ..++.+.++++.++|.|+.+..++.+|+.|.... |+|||||||
T Consensus 215 ~~p~gVLL~GPPGTGKT~LAraIA~el~-~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~--------P~ILfIDEI 285 (438)
T PTZ00361 215 KPPKGVILYGPPGTGKTLLAKAVANETS-ATFLRVVGSELIQKYLGDGPKLVRELFRVAEENA--------PSIVFIDEI 285 (438)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhC-CCEEEEecchhhhhhcchHHHHHHHHHHHHHhCC--------CcEEeHHHH
Confidence 9999999999999999999999999985 5567788999999999999999999999998765 569999999
Q ss_pred hhhhccCCCCCC-CCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHH
Q 007661 332 DAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQI 410 (594)
Q Consensus 332 d~l~~~~~~~~~-~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~ 410 (594)
|.++.++....+ +.....+.+.+|+..+|++....++.||++||+++.||++++|+|||+..|+|+.||.++|.+||+.
T Consensus 286 D~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~ 365 (438)
T PTZ00361 286 DAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEI 365 (438)
T ss_pred HHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHH
Confidence 999987754322 2233456778899999999888899999999999999999999999999999999999999999999
Q ss_pred HHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcc
Q 007661 411 HTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 487 (594)
Q Consensus 411 ~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 487 (594)
+++++. +..++++..++..++||+|+||.++|++|.+.|+++. ...|+.+||.+|++.+.
T Consensus 366 ~~~k~~----l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~-------------r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 366 HTSKMT----LAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER-------------RMKVTQADFRKAKEKVL 425 (438)
T ss_pred HHhcCC----CCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-------------CCccCHHHHHHHHHHHH
Confidence 999886 6678999999999999999999999999999998753 35699999999999874
No 23
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.3e-39 Score=344.85 Aligned_cols=254 Identities=40% Similarity=0.651 Sum_probs=227.8
Q ss_pred cccCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEec
Q 007661 209 FRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNG 288 (594)
Q Consensus 209 ~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~ 288 (594)
...|+++|++ |||++++++++ ++++..|+.+|+.|..+|+.+|+|+|||||||||||++|+++|++++ ..++.+++
T Consensus 123 ~~~p~~~~~d--i~Gl~~~~~~l-~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~-~~~i~v~~ 198 (389)
T PRK03992 123 IESPNVTYED--IGGLEEQIREV-REAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN-ATFIRVVG 198 (389)
T ss_pred cCCCCCCHHH--hCCcHHHHHHH-HHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC-CCEEEeeh
Confidence 3458899998 99999999999 99999999999999999999999999999999999999999999984 56788999
Q ss_pred chhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCC-CchHHHHHHHHHHhhcCccccCc
Q 007661 289 PEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDG-TGVHDSIVNQLLTKIDGVESLNN 367 (594)
Q Consensus 289 ~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~-~~~~~~~v~~Ll~~ld~~~~~~~ 367 (594)
+++..+|.|+.+..++.+|+.+.... |+||||||+|.+++++.....+ .....+.+.+++..++++...++
T Consensus 199 ~~l~~~~~g~~~~~i~~~f~~a~~~~--------p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~ 270 (389)
T PRK03992 199 SELVQKFIGEGARLVRELFELAREKA--------PSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGN 270 (389)
T ss_pred HHHhHhhccchHHHHHHHHHHHHhcC--------CeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCC
Confidence 99999999999999999999998765 5699999999999877653322 23445677889999999888889
Q ss_pred EEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHH
Q 007661 368 VLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAK 447 (594)
Q Consensus 368 v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~ 447 (594)
+.||++||+++.+|++++|||||+..|+|++|+.++|.+||+.+++++. +..++++..+|..|.||+|+||.++|+
T Consensus 271 v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~----~~~~~~~~~la~~t~g~sgadl~~l~~ 346 (389)
T PRK03992 271 VKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMN----LADDVDLEELAELTEGASGADLKAICT 346 (389)
T ss_pred EEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCC----CCCcCCHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998876 566789999999999999999999999
Q ss_pred HHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcccCCC
Q 007661 448 SAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAFG 491 (594)
Q Consensus 448 ~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ps~~ 491 (594)
+|.+.|+++. ...|+.+||.+|+..+.++..
T Consensus 347 eA~~~a~~~~-------------~~~i~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 347 EAGMFAIRDD-------------RTEVTMEDFLKAIEKVMGKEE 377 (389)
T ss_pred HHHHHHHHcC-------------CCCcCHHHHHHHHHHHhcccc
Confidence 9999998752 346999999999999988653
No 24
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-41 Score=322.65 Aligned_cols=262 Identities=29% Similarity=0.499 Sum_probs=227.1
Q ss_pred cccCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEec
Q 007661 209 FRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNG 288 (594)
Q Consensus 209 ~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~ 288 (594)
.+.|++.|+| +.||+..++.+ ++++.+|+..|++|.. +..|-+|||||||||||||+||+++|.+.+ ..++.|+.
T Consensus 125 ~EKPNVkWsD--VAGLE~AKeAL-KEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAn-STFFSvSS 199 (439)
T KOG0739|consen 125 REKPNVKWSD--VAGLEGAKEAL-KEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEAN-STFFSVSS 199 (439)
T ss_pred ccCCCCchhh--hccchhHHHHH-HhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcC-CceEEeeh
Confidence 3459999999 99999999888 9999999999999986 567889999999999999999999999986 66788999
Q ss_pred chhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcccc-Cc
Q 007661 289 PEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESL-NN 367 (594)
Q Consensus 289 ~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~-~~ 367 (594)
++++++|+|++++.++++|+.|+++.| +||||||||++|..|+.+. ++..+++-..||-+|+|+... ..
T Consensus 200 SDLvSKWmGESEkLVknLFemARe~kP--------SIIFiDEiDslcg~r~enE--seasRRIKTEfLVQMqGVG~d~~g 269 (439)
T KOG0739|consen 200 SDLVSKWMGESEKLVKNLFEMARENKP--------SIIFIDEIDSLCGSRSENE--SEASRRIKTEFLVQMQGVGNDNDG 269 (439)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhcCC--------cEEEeehhhhhccCCCCCc--hHHHHHHHHHHHHhhhccccCCCc
Confidence 999999999999999999999999875 4999999999999887654 467899999999999998654 47
Q ss_pred EEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHH
Q 007661 368 VLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAK 447 (594)
Q Consensus 368 v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~ 447 (594)
++|+|+||-|+.||.+++| ||+..|+||+|+...|..+++.|+...+. ...+.|+.+|+..|+||+|+||.-+++
T Consensus 270 vLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~---~LT~~d~~eL~~kTeGySGsDisivVr 344 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPH---VLTEQDFKELARKTEGYSGSDISIVVR 344 (439)
T ss_pred eEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCcc---ccchhhHHHHHhhcCCCCcCceEEEeh
Confidence 9999999999999999999 99999999999999999999999988765 356789999999999999999999999
Q ss_pred HHHHHHHHhccCcccC---------------CCCc------------------ccchhhcchhHHHHHHHhcccCC
Q 007661 448 SAVSFALNRQLSMDDL---------------TKPV------------------DEESIKVTMDDFLHALYEIVPAF 490 (594)
Q Consensus 448 ~A~~~a~~r~~~~~~~---------------~~~~------------------~~~~~~vt~~df~~al~~~~ps~ 490 (594)
.|.+...++......+ ..+. ..-...+|+.||.+++...+|..
T Consensus 345 DalmePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTv 420 (439)
T KOG0739|consen 345 DALMEPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTV 420 (439)
T ss_pred hhhhhhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCC
Confidence 9998887664321110 0000 01135789999999999998875
No 25
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-40 Score=356.44 Aligned_cols=246 Identities=37% Similarity=0.599 Sum_probs=223.0
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
..++|.| +.|+++.+++| .+ |...+.+|+.|.++|.+.|+|+||+||||||||+||||+|.+. +.+++.++++++
T Consensus 306 t~V~FkD--VAG~deAK~El-~E-~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-gVPF~svSGSEF 380 (774)
T KOG0731|consen 306 TGVKFKD--VAGVDEAKEEL-ME-FVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSVSGSEF 380 (774)
T ss_pred CCCcccc--ccCcHHHHHHH-HH-HHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-CCceeeechHHH
Confidence 4589999 99999999999 66 4567899999999999999999999999999999999999996 789999999999
Q ss_pred hhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCC--CCCCCchHHHHHHHHHHhhcCccccCcEE
Q 007661 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGS--TRDGTGVHDSIVNQLLTKIDGVESLNNVL 369 (594)
Q Consensus 292 ~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~--~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~ 369 (594)
+..+.|....+++++|..|+.+. ||||||||||++..+|++ ...++...+..++|||.+|||+....+|+
T Consensus 381 vE~~~g~~asrvr~lf~~ar~~a--------P~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi 452 (774)
T KOG0731|consen 381 VEMFVGVGASRVRDLFPLARKNA--------PSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVI 452 (774)
T ss_pred HHHhcccchHHHHHHHHHhhccC--------CeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEE
Confidence 99999999999999999999986 669999999999999852 22345667889999999999999999999
Q ss_pred EEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHH
Q 007661 370 LIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSA 449 (594)
Q Consensus 370 vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A 449 (594)
|+++||+++.||++|+||||||++|.++.||..+|.+|++.|+++.+.. .+++++..+|.+|+||+|+||.++|.+|
T Consensus 453 ~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~~a~~t~gf~gadl~n~~nea 529 (774)
T KOG0731|consen 453 VLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSKLASLTPGFSGADLANLCNEA 529 (774)
T ss_pred EEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHHHHhcCCCCcHHHHHhhhhHH
Confidence 9999999999999999999999999999999999999999999987621 4788999999999999999999999999
Q ss_pred HHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhc
Q 007661 450 VSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (594)
Q Consensus 450 ~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~ 486 (594)
+..|.++. ...|+..||..|++.+
T Consensus 530 a~~a~r~~-------------~~~i~~~~~~~a~~Rv 553 (774)
T KOG0731|consen 530 ALLAARKG-------------LREIGTKDLEYAIERV 553 (774)
T ss_pred HHHHHHhc-------------cCccchhhHHHHHHHH
Confidence 99998753 3568889999998854
No 26
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=6.9e-39 Score=366.06 Aligned_cols=263 Identities=44% Similarity=0.700 Sum_probs=234.5
Q ss_pred cCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecch
Q 007661 211 HKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 290 (594)
Q Consensus 211 ~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~ 290 (594)
.|+++|++ |||++..++++ ++++..++.+|+++.++|+++|+|+|||||||||||++|+++|+++ +.+++.+++++
T Consensus 447 ~~~~~~~d--i~g~~~~k~~l-~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~-~~~fi~v~~~~ 522 (733)
T TIGR01243 447 VPNVRWSD--IGGLEEVKQEL-REAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES-GANFIAVRGPE 522 (733)
T ss_pred ccccchhh--cccHHHHHHHH-HHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc-CCCEEEEehHH
Confidence 46788998 99999999988 9999999999999999999999999999999999999999999998 46788899999
Q ss_pred hhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEE
Q 007661 291 VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLL 370 (594)
Q Consensus 291 l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~v 370 (594)
+.++|+|+++..++.+|+.|+... |+||||||+|++++.++...+ ....++++++||..||++....+++|
T Consensus 523 l~~~~vGese~~i~~~f~~A~~~~--------p~iifiDEid~l~~~r~~~~~-~~~~~~~~~~lL~~ldg~~~~~~v~v 593 (733)
T TIGR01243 523 ILSKWVGESEKAIREIFRKARQAA--------PAIIFFDEIDAIAPARGARFD-TSVTDRIVNQLLTEMDGIQELSNVVV 593 (733)
T ss_pred HhhcccCcHHHHHHHHHHHHHhcC--------CEEEEEEChhhhhccCCCCCC-ccHHHHHHHHHHHHhhcccCCCCEEE
Confidence 999999999999999999999875 569999999999998865432 35678999999999999988889999
Q ss_pred EEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 007661 371 IGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAV 450 (594)
Q Consensus 371 I~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~ 450 (594)
|++||+|+.||++++|||||+..|++++||.++|.+||+.++++++ +..++++..||+.|+||+|+||.++|++|.
T Consensus 594 I~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~----~~~~~~l~~la~~t~g~sgadi~~~~~~A~ 669 (733)
T TIGR01243 594 IAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP----LAEDVDLEELAEMTEGYTGADIEAVCREAA 669 (733)
T ss_pred EEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC----CCccCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998876 667899999999999999999999999999
Q ss_pred HHHHHhccCccc---CCC--CcccchhhcchhHHHHHHHhcccCC
Q 007661 451 SFALNRQLSMDD---LTK--PVDEESIKVTMDDFLHALYEIVPAF 490 (594)
Q Consensus 451 ~~a~~r~~~~~~---~~~--~~~~~~~~vt~~df~~al~~~~ps~ 490 (594)
+.|+++.+.... +.. ........++++||.+|++.++|+.
T Consensus 670 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~ 714 (733)
T TIGR01243 670 MAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSV 714 (733)
T ss_pred HHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCC
Confidence 999987654221 110 0012345799999999999999985
No 27
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-39 Score=322.78 Aligned_cols=258 Identities=32% Similarity=0.483 Sum_probs=223.6
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecch
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLG-IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 290 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g-~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~ 290 (594)
-+++|+| ||||+.+++++ ++.+.+|+++|++|...+ +++++|||||||||||||++|+++|++. +..++-|.++.
T Consensus 87 I~v~f~D--IggLe~v~~~L-~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea-ga~fInv~~s~ 162 (386)
T KOG0737|consen 87 IGVSFDD--IGGLEEVKDAL-QELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA-GANFINVSVSN 162 (386)
T ss_pred ceeehhh--ccchHHHHHHH-HHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc-CCCcceeeccc
Confidence 3567888 99999999999 999999999999996443 5799999999999999999999999997 56788899999
Q ss_pred hhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCc--E
Q 007661 291 VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNN--V 368 (594)
Q Consensus 291 l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~--v 368 (594)
+.++|+|+.++.++.+|..|.+-+ |+||||||+|.++..|.+ .+.+....+-+++...+||+....+ |
T Consensus 163 lt~KWfgE~eKlv~AvFslAsKl~--------P~iIFIDEvds~L~~R~s--~dHEa~a~mK~eFM~~WDGl~s~~~~rV 232 (386)
T KOG0737|consen 163 LTSKWFGEAQKLVKAVFSLASKLQ--------PSIIFIDEVDSFLGQRRS--TDHEATAMMKNEFMALWDGLSSKDSERV 232 (386)
T ss_pred cchhhHHHHHHHHHHHHhhhhhcC--------cceeehhhHHHHHhhccc--chHHHHHHHHHHHHHHhccccCCCCceE
Confidence 999999999999999999999876 559999999999999843 3346777888999999999987665 9
Q ss_pred EEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHH
Q 007661 369 LLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKS 448 (594)
Q Consensus 369 ~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~ 448 (594)
+|+||||+|.++|.|+.| |++..+++++|+.++|.+||+..+++.+ +.+++|+.++|..|.||||+||..+|+.
T Consensus 233 lVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~----~e~~vD~~~iA~~t~GySGSDLkelC~~ 306 (386)
T KOG0737|consen 233 LVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEK----LEDDVDLDEIAQMTEGYSGSDLKELCRL 306 (386)
T ss_pred EEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccc----cCcccCHHHHHHhcCCCcHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999998876 7799999999999999999999999999
Q ss_pred HHHHHHHhccCcc----cCCCC---c--------ccchhhcchhHHHHHHHhcccC
Q 007661 449 AVSFALNRQLSMD----DLTKP---V--------DEESIKVTMDDFLHALYEIVPA 489 (594)
Q Consensus 449 A~~~a~~r~~~~~----~~~~~---~--------~~~~~~vt~~df~~al~~~~ps 489 (594)
|+....+..+... +.... . ......++++||.++...+.++
T Consensus 307 Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~ 362 (386)
T KOG0737|consen 307 AALRPIRELLVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSAS 362 (386)
T ss_pred HhHhHHHHHHHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhH
Confidence 9999988766543 11000 0 0113667888888888876554
No 28
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-38 Score=349.54 Aligned_cols=253 Identities=43% Similarity=0.693 Sum_probs=231.1
Q ss_pred ccCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecc
Q 007661 210 RHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGP 289 (594)
Q Consensus 210 ~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~ 289 (594)
..++++|++ |||++..++.+ ++++..++.+|+.+.+.++++++|+|||||||||||++|+++|+++ +.+++.+.++
T Consensus 235 ~~~~v~~~d--iggl~~~k~~l-~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~-~~~fi~v~~~ 310 (494)
T COG0464 235 EDEDVTLDD--IGGLEEAKEEL-KEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES-RSRFISVKGS 310 (494)
T ss_pred CCCCcceeh--hhcHHHHHHHH-HHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC-CCeEEEeeCH
Confidence 347889998 99999999988 9999999999999999999999999999999999999999999987 4667888999
Q ss_pred hhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEE
Q 007661 290 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVL 369 (594)
Q Consensus 290 ~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~ 369 (594)
+++++|+|+++++++++|+.|+... ||||||||+|++++.++...+ ....+++++|+.+||+++...+|+
T Consensus 311 ~l~sk~vGesek~ir~~F~~A~~~~--------p~iiFiDEiDs~~~~r~~~~~--~~~~r~~~~lL~~~d~~e~~~~v~ 380 (494)
T COG0464 311 ELLSKWVGESEKNIRELFEKARKLA--------PSIIFIDEIDSLASGRGPSED--GSGRRVVGQLLTELDGIEKAEGVL 380 (494)
T ss_pred HHhccccchHHHHHHHHHHHHHcCC--------CcEEEEEchhhhhccCCCCCc--hHHHHHHHHHHHHhcCCCccCceE
Confidence 9999999999999999999999775 569999999999999876544 234799999999999999999999
Q ss_pred EEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHH
Q 007661 370 LIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSA 449 (594)
Q Consensus 370 vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A 449 (594)
||++||+|+.+|++++|||||+..+++++||.++|.+||+.+++..... +..++++..+++.|.||+|+||..+|++|
T Consensus 381 vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~--~~~~~~~~~l~~~t~~~sgadi~~i~~ea 458 (494)
T COG0464 381 VIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPP--LAEDVDLEELAEITEGYSGADIAALVREA 458 (494)
T ss_pred EEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCc--chhhhhHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999865422 46789999999999999999999999999
Q ss_pred HHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcccCC
Q 007661 450 VSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAF 490 (594)
Q Consensus 450 ~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ps~ 490 (594)
.+.++.+.. ...++++||..|++...|+.
T Consensus 459 ~~~~~~~~~------------~~~~~~~~~~~a~~~~~p~~ 487 (494)
T COG0464 459 ALEALREAR------------RREVTLDDFLDALKKIKPSV 487 (494)
T ss_pred HHHHHHHhc------------cCCccHHHHHHHHHhcCCCC
Confidence 999998643 35699999999999998885
No 29
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-39 Score=311.24 Aligned_cols=248 Identities=35% Similarity=0.579 Sum_probs=221.4
Q ss_pred cCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecch
Q 007661 211 HKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 290 (594)
Q Consensus 211 ~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~ 290 (594)
+.+++|+. +||+-.++.++ ++.++.|+.+|++|.++|+++|++++||||||||||++|+++|..+. .+++.+..++
T Consensus 126 ~~~~s~~~--~ggl~~qirel-re~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg-~nfl~v~ss~ 201 (388)
T KOG0651|consen 126 PRNISFEN--VGGLFYQIREL-REVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMG-VNFLKVVSSA 201 (388)
T ss_pred ccccCHHH--hCChHHHHHHH-HhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcC-CceEEeeHhh
Confidence 36789998 99999999999 99999999999999999999999999999999999999999999995 5566778899
Q ss_pred hhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCC-CCCchHHHHHHHHHHhhcCccccCcEE
Q 007661 291 VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTR-DGTGVHDSIVNQLLTKIDGVESLNNVL 369 (594)
Q Consensus 291 l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~-~~~~~~~~~v~~Ll~~ld~~~~~~~v~ 369 (594)
+.++|.|++.+.+|+.|..|.... |||||+||||++...+.+.. .......+.+-.|+++||+++..++|-
T Consensus 202 lv~kyiGEsaRlIRemf~yA~~~~--------pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk 273 (388)
T KOG0651|consen 202 LVDKYIGESARLIRDMFRYAREVI--------PCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVK 273 (388)
T ss_pred hhhhhcccHHHHHHHHHHHHhhhC--------ceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhccccc
Confidence 999999999999999999999986 56999999999998874432 122344555667888999999999999
Q ss_pred EEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHH
Q 007661 370 LIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSA 449 (594)
Q Consensus 370 vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A 449 (594)
+|.|||+|+.|||+|+||||+++.+++|+|++..|..|++.|...+. .....|.+.+.+.++||+|+|+.+.|.+|
T Consensus 274 ~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~----~~Geid~eaivK~~d~f~gad~rn~~tEa 349 (388)
T KOG0651|consen 274 TIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPID----FHGEIDDEAILKLVDGFNGADLRNVCTEA 349 (388)
T ss_pred EEEecCCccccchhhcCCccccceeccCCcchhhceeeEeecccccc----ccccccHHHHHHHHhccChHHHhhhcccc
Confidence 99999999999999999999999999999999999999999988876 34567799999999999999999999999
Q ss_pred HHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcc
Q 007661 450 VSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 487 (594)
Q Consensus 450 ~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 487 (594)
.+++++ .+...+.++||.+++.++.
T Consensus 350 g~Fa~~-------------~~~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 350 GMFAIP-------------EERDEVLHEDFMKLVRKQA 374 (388)
T ss_pred cccccc-------------hhhHHHhHHHHHHHHHHHH
Confidence 988876 3456788999999988763
No 30
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-38 Score=354.26 Aligned_cols=359 Identities=31% Similarity=0.459 Sum_probs=281.9
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCC----CCcEEEe
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG----MEPKIVN 287 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~----~~~~~v~ 287 (594)
..++|++ ||||+..+.++ ++++..|+.+|++|.++++.||+|+|+|||||||||++|+++|..+.. ..+..-.
T Consensus 260 ~~v~fd~--vggl~~~i~~L-KEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrk 336 (1080)
T KOG0732|consen 260 SSVGFDS--VGGLENYINQL-KEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRK 336 (1080)
T ss_pred cccCccc--cccHHHHHHHH-HHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhc
Confidence 6789998 99999999999 999999999999999999999999999999999999999999988742 2344468
Q ss_pred cchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCc
Q 007661 288 GPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNN 367 (594)
Q Consensus 288 ~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~ 367 (594)
+++++++|+|+.++.++.+|++|+..+|+ |||+||||-|+|.|...+. +.+..++..||..|||+..++.
T Consensus 337 gaD~lskwvgEaERqlrllFeeA~k~qPS--------IIffdeIdGlapvrSskqE--qih~SIvSTLLaLmdGldsRgq 406 (1080)
T KOG0732|consen 337 GADCLSKWVGEAERQLRLLFEEAQKTQPS--------IIFFDEIDGLAPVRSSKQE--QIHASIVSTLLALMDGLDSRGQ 406 (1080)
T ss_pred CchhhccccCcHHHHHHHHHHHHhccCce--------EEeccccccccccccchHH--HhhhhHHHHHHHhccCCCCCCc
Confidence 99999999999999999999999999855 9999999999998866543 5678899999999999999999
Q ss_pred EEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHH
Q 007661 368 VLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAK 447 (594)
Q Consensus 368 v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~ 447 (594)
|+|||+||+|+.+||+|+|||||+++++|++|+.+.|.+|+.+|+++... .....-+..||+.|.||.|+||+++|.
T Consensus 407 VvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~---~i~~~l~~~la~~t~gy~gaDlkaLCT 483 (1080)
T KOG0732|consen 407 VVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEP---PISRELLLWLAEETSGYGGADLKALCT 483 (1080)
T ss_pred eEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCC---CCCHHHHHHHHHhccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988762 233446789999999999999999999
Q ss_pred HHHHHHHHhccCcccCCC---CcccchhhcchhHHHHHHHhcccCCCcCCccccc--c--c------------cCcceec
Q 007661 448 SAVSFALNRQLSMDDLTK---PVDEESIKVTMDDFLHALYEIVPAFGASTDDLER--S--R------------LNGMVDC 508 (594)
Q Consensus 448 ~A~~~a~~r~~~~~~~~~---~~~~~~~~vt~~df~~al~~~~ps~~~~~~~~~~--~--~------------~~~~~~~ 508 (594)
+|+..+++|..+..-... ..+.....|...||..|+.+..|+...+...... . . +.+..++
T Consensus 484 eAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~v 563 (1080)
T KOG0732|consen 484 EAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDV 563 (1080)
T ss_pred HHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecccchHHHHHHhhcchhH
Confidence 999999998765433222 1244556699999999999998875432111100 0 0 0011111
Q ss_pred ---cchhhHHHHHHHHHHHHH--HhcCCCcceEEEeecCCCCchHHHHHHHH-hhcCCCEEEEeccccc----cccccch
Q 007661 509 ---GDRHKHIYQRAMLLVEQV--KVSKGSPLVTCLLEGPSGSGKTALAATAG-IDSDFPFVKIISAESM----IGLHEST 578 (594)
Q Consensus 509 ---~~~~~~~~~~~~~~~~~~--~~~~~~p~~gvLL~GPpG~GKT~lAkalA-~~~~~~fi~v~~~e~~----vG~sE~~ 578 (594)
.....+...+.....+.. ...-.+|+ .|+.|..|.|-+.+.+||= ...+++..+...+.++ -+..+.+
T Consensus 564 a~~~~k~~e~~~~~v~~~e~~~~i~lic~~~--lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~ 641 (1080)
T KOG0732|consen 564 ASSMAKIEEHLKLLVRSFESNFAIRLICRPR--LLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEE 641 (1080)
T ss_pred HhhhhhHHHHhHHHHHhhhcccchhhhcCcH--HhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHH
Confidence 011111111111111110 01111222 6888999999999999876 4568999999888886 2334544
Q ss_pred hhhHHHHHHHhhhc
Q 007661 579 KCAQIVKVSECQFS 592 (594)
Q Consensus 579 ~~~~ir~~F~~A~~ 592 (594)
|-.+|-.||+
T Consensus 642 ----iv~i~~eaR~ 651 (1080)
T KOG0732|consen 642 ----IVHIFMEARK 651 (1080)
T ss_pred ----HHHHHHHHhc
Confidence 9999999996
No 31
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-38 Score=337.19 Aligned_cols=245 Identities=36% Similarity=0.600 Sum_probs=224.6
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
..++|.| +.|.++.++++ .+ +..+++.|..|..+|.+-|+|+||+||||||||+|||++|.+. +.+++.++++++
T Consensus 145 ~~v~F~D--VAG~dEakeel-~E-iVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-~VPFf~iSGS~F 219 (596)
T COG0465 145 VKVTFAD--VAGVDEAKEEL-SE-LVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-GVPFFSISGSDF 219 (596)
T ss_pred cCcChhh--hcCcHHHHHHH-HH-HHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-CCCceeccchhh
Confidence 5688999 99999999999 55 4578899999999999999999999999999999999999997 688899999999
Q ss_pred hhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCC-CCCCchHHHHHHHHHHhhcCccccCcEEE
Q 007661 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGST-RDGTGVHDSIVNQLLTKIDGVESLNNVLL 370 (594)
Q Consensus 292 ~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~-~~~~~~~~~~v~~Ll~~ld~~~~~~~v~v 370 (594)
+..|+|-...++|++|++|++.+ ||||||||||++..+|+.. .++....+..++|||.+|||+..+..|++
T Consensus 220 VemfVGvGAsRVRdLF~qAkk~a--------P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviv 291 (596)
T COG0465 220 VEMFVGVGASRVRDLFEQAKKNA--------PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIV 291 (596)
T ss_pred hhhhcCCCcHHHHHHHHHhhccC--------CCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEE
Confidence 99999999999999999999986 5699999999999999754 33455666799999999999998889999
Q ss_pred EEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 007661 371 IGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAV 450 (594)
Q Consensus 371 I~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~ 450 (594)
|++||+|+-+|+||+||||||++|.++.||..+|.+||+.|.++.+ +.+++|+..+|+.|.||+|+|+.+++.+|+
T Consensus 292 iaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~----l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAa 367 (596)
T COG0465 292 IAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKP----LAEDVDLKKIARGTPGFSGADLANLLNEAA 367 (596)
T ss_pred EecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCC----CCCcCCHHHHhhhCCCcccchHhhhHHHHH
Confidence 9999999999999999999999999999999999999999998877 778999999999999999999999999999
Q ss_pred HHHHHhccCcccCCCCcccchhhcchhHHHHHHHhc
Q 007661 451 SFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (594)
Q Consensus 451 ~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~ 486 (594)
..|.++. ...+++.||.+|..++
T Consensus 368 l~aar~n-------------~~~i~~~~i~ea~drv 390 (596)
T COG0465 368 LLAARRN-------------KKEITMRDIEEAIDRV 390 (596)
T ss_pred HHHHHhc-------------CeeEeccchHHHHHHH
Confidence 9998863 4568888888888877
No 32
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=4.5e-36 Score=316.61 Aligned_cols=249 Identities=41% Similarity=0.654 Sum_probs=220.6
Q ss_pred cccCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEec
Q 007661 209 FRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNG 288 (594)
Q Consensus 209 ~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~ 288 (594)
.+.|++.|++ |||++++++++ ++++..++.+|+.+..+|+.+|+|+|||||||||||++|+++++++. ..++.+.+
T Consensus 114 ~~~p~~~~~d--i~Gl~~~~~~l-~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~-~~~~~v~~ 189 (364)
T TIGR01242 114 EERPNVSYED--IGGLEEQIREI-REAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN-ATFIRVVG 189 (364)
T ss_pred ccCCCCCHHH--hCChHHHHHHH-HHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC-CCEEecch
Confidence 3458899998 99999999999 99999999999999999999999999999999999999999999985 55677888
Q ss_pred chhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCC-CCchHHHHHHHHHHhhcCccccCc
Q 007661 289 PEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNN 367 (594)
Q Consensus 289 ~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~-~~~~~~~~v~~Ll~~ld~~~~~~~ 367 (594)
.++..+|.|+....++.+|+.+.... |+||||||+|.++..+..... +.....+.+.+++..++++...++
T Consensus 190 ~~l~~~~~g~~~~~i~~~f~~a~~~~--------p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 261 (364)
T TIGR01242 190 SELVRKYIGEGARLVREIFELAKEKA--------PSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGN 261 (364)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcC--------CcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 89999999999999999999988764 559999999999877654322 223345677889999998887789
Q ss_pred EEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHH
Q 007661 368 VLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAK 447 (594)
Q Consensus 368 v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~ 447 (594)
+.||++||+++.+|++++|+|||+..|+++.|+.++|.+||+.+++++. +..++++..++..+.||+|+||.++|+
T Consensus 262 v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~----l~~~~~~~~la~~t~g~sg~dl~~l~~ 337 (364)
T TIGR01242 262 VKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMK----LAEDVDLEAIAKMTEGASGADLKAICT 337 (364)
T ss_pred EEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCC----CCccCCHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998776 556789999999999999999999999
Q ss_pred HHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhc
Q 007661 448 SAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (594)
Q Consensus 448 ~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~ 486 (594)
+|.+.|+++. ...|+.+||.+|+..+
T Consensus 338 ~A~~~a~~~~-------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 338 EAGMFAIREE-------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHHHHHHhC-------------CCccCHHHHHHHHHHh
Confidence 9999998752 3469999999998865
No 33
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.5e-36 Score=326.03 Aligned_cols=248 Identities=25% Similarity=0.383 Sum_probs=212.1
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
++.+|++ |||++..++.+ ++.... .+....++|+++|+|||||||||||||++|+++|+++ +.+++.+++..+
T Consensus 223 ~~~~~~d--vgGl~~lK~~l-~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~-~~~~~~l~~~~l 295 (489)
T CHL00195 223 VNEKISD--IGGLDNLKDWL-KKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW-QLPLLRLDVGKL 295 (489)
T ss_pred CCCCHHH--hcCHHHHHHHH-HHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh-CCCEEEEEhHHh
Confidence 6788998 99999988877 443221 2344577899999999999999999999999999998 577889999999
Q ss_pred hhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEE
Q 007661 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLI 371 (594)
Q Consensus 292 ~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI 371 (594)
.++|+|+++.+++++|+.|+... ||||||||||.++.++... ++.+...+++.++++.|+. ...+++||
T Consensus 296 ~~~~vGese~~l~~~f~~A~~~~--------P~IL~IDEID~~~~~~~~~-~d~~~~~rvl~~lL~~l~~--~~~~V~vI 364 (489)
T CHL00195 296 FGGIVGESESRMRQMIRIAEALS--------PCILWIDEIDKAFSNSESK-GDSGTTNRVLATFITWLSE--KKSPVFVV 364 (489)
T ss_pred cccccChHHHHHHHHHHHHHhcC--------CcEEEehhhhhhhccccCC-CCchHHHHHHHHHHHHHhc--CCCceEEE
Confidence 99999999999999999998875 5699999999998765432 2345678899999999985 34579999
Q ss_pred EeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHH
Q 007661 372 GMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVS 451 (594)
Q Consensus 372 ~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~ 451 (594)
+|||+++.||++++|+|||+..++++.|+.++|.+||+.|+++.... ...+.++..||+.|+||+|+||+++|.+|..
T Consensus 365 aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~--~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~ 442 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPK--SWKKYDIKKLSKLSNKFSGAEIEQSIIEAMY 442 (489)
T ss_pred EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCC--cccccCHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999886422 2347899999999999999999999999999
Q ss_pred HHHHhccCcccCCCCcccchhhcchhHHHHHHHhcccCCCcC
Q 007661 452 FALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAFGAS 493 (594)
Q Consensus 452 ~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ps~~~~ 493 (594)
.|..+ ...++.+||..|+..+.|.+...
T Consensus 443 ~A~~~--------------~~~lt~~dl~~a~~~~~Pls~~~ 470 (489)
T CHL00195 443 IAFYE--------------KREFTTDDILLALKQFIPLAQTE 470 (489)
T ss_pred HHHHc--------------CCCcCHHHHHHHHHhcCCCcccC
Confidence 88754 24589999999999999986433
No 34
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=4.8e-36 Score=321.44 Aligned_cols=258 Identities=34% Similarity=0.594 Sum_probs=210.0
Q ss_pred cCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCC---------
Q 007661 211 HKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGM--------- 281 (594)
Q Consensus 211 ~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~--------- 281 (594)
.|+++|++ |||++++++++ ++++..|+.+|++|..+|+++|+|+|||||||||||++|+++|+++...
T Consensus 176 ~p~v~~~d--IgGl~~~i~~i-~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~ 252 (512)
T TIGR03689 176 VPDVTYAD--IGGLDSQIEQI-RDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKS 252 (512)
T ss_pred CCCCCHHH--cCChHHHHHHH-HHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCce
Confidence 48899999 99999999999 9999999999999999999999999999999999999999999998422
Q ss_pred CcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcC
Q 007661 282 EPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG 361 (594)
Q Consensus 282 ~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~ 361 (594)
.++.+.+++++++|.|+++..++.+|+.+..... ...|+||||||+|.++++|+...+ ++...+++++||+.||+
T Consensus 253 ~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~----~g~p~IIfIDEiD~L~~~R~~~~s-~d~e~~il~~LL~~LDg 327 (512)
T TIGR03689 253 YFLNIKGPELLNKYVGETERQIRLIFQRAREKAS----DGRPVIVFFDEMDSIFRTRGSGVS-SDVETTVVPQLLSELDG 327 (512)
T ss_pred eEEeccchhhcccccchHHHHHHHHHHHHHHHhh----cCCCceEEEehhhhhhcccCCCcc-chHHHHHHHHHHHHhcc
Confidence 2345677899999999999999999999887531 124789999999999988765322 34567889999999999
Q ss_pred ccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhcc-ccCCCC-----CCcccHHHHHHH--
Q 007661 362 VESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKM-KENSFL-----APDVNLQELAAR-- 433 (594)
Q Consensus 362 ~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~-~~~~~l-----~~~~~l~~la~~-- 433 (594)
+...++++||++||+++.||++++|||||+.+|+|+.|+.++|.+||+.++... +....+ ....++..+++.
T Consensus 328 l~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av 407 (512)
T TIGR03689 328 VESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAV 407 (512)
T ss_pred cccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHH
Confidence 998889999999999999999999999999999999999999999999987642 210000 011122222222
Q ss_pred ---------------------------cCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHh
Q 007661 434 ---------------------------TKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYE 485 (594)
Q Consensus 434 ---------------------------t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~ 485 (594)
++.+||++|.++|.+|...|+++.+. .....++.+|+..|+.+
T Consensus 408 ~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~---------~~~~~~~~~~l~~a~~~ 477 (512)
T TIGR03689 408 DHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHIT---------GGQVGLRIEHLLAAVLD 477 (512)
T ss_pred HHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHh---------cCCcCcCHHHHHHHHHH
Confidence 34578888888888888888887653 12346889999999874
No 35
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=2.7e-35 Score=322.44 Aligned_cols=246 Identities=37% Similarity=0.629 Sum_probs=216.4
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
|+++|++ |+|++..++++ ++++.. +.+|+.+.++|.++|+|+|||||||||||++|+++|+++ +.+++.++++++
T Consensus 50 ~~~~~~d--i~g~~~~k~~l-~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-~~~~~~i~~~~~ 124 (495)
T TIGR01241 50 PKVTFKD--VAGIDEAKEEL-MEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-GVPFFSISGSDF 124 (495)
T ss_pred CCCCHHH--hCCHHHHHHHH-HHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc-CCCeeeccHHHH
Confidence 7889999 99999999998 676664 789999999999999999999999999999999999997 567888999999
Q ss_pred hhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCC-CCCchHHHHHHHHHHhhcCccccCcEEE
Q 007661 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTR-DGTGVHDSIVNQLLTKIDGVESLNNVLL 370 (594)
Q Consensus 292 ~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~-~~~~~~~~~v~~Ll~~ld~~~~~~~v~v 370 (594)
.+.+.|..+..++.+|+.|.... |+||||||+|.++++++... +.......++++|+..||++....+++|
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~--------p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~v 196 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNA--------PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIV 196 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcC--------CCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEE
Confidence 99999999999999999998775 56999999999998876532 2234456789999999999988889999
Q ss_pred EEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 007661 371 IGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAV 450 (594)
Q Consensus 371 I~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~ 450 (594)
|++||+++.||++++|||||+..|+++.|+.++|.+||+.+++... +..++++..++..+.||+|+||.++|++|.
T Consensus 197 I~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~----~~~~~~l~~la~~t~G~sgadl~~l~~eA~ 272 (495)
T TIGR01241 197 IAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKK----LAPDVDLKAVARRTPGFSGADLANLLNEAA 272 (495)
T ss_pred EEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCC----CCcchhHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998765 446789999999999999999999999998
Q ss_pred HHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcc
Q 007661 451 SFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 487 (594)
Q Consensus 451 ~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 487 (594)
..+.++. ...++.+||..|+..+.
T Consensus 273 ~~a~~~~-------------~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 273 LLAARKN-------------KTEITMNDIEEAIDRVI 296 (495)
T ss_pred HHHHHcC-------------CCCCCHHHHHHHHHHHh
Confidence 8776542 23577888888877653
No 36
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=6e-34 Score=315.12 Aligned_cols=245 Identities=36% Similarity=0.622 Sum_probs=215.4
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
+.++|+| |+|+++.++++ ++.+. .+.+|+.+..+|...|+|+||+||||||||++|+++|+++ +.+++.++++++
T Consensus 178 ~~~~f~d--v~G~~~~k~~l-~eiv~-~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~-~~p~i~is~s~f 252 (638)
T CHL00176 178 TGITFRD--IAGIEEAKEEF-EEVVS-FLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-EVPFFSISGSEF 252 (638)
T ss_pred CCCCHHh--ccChHHHHHHH-HHHHH-HHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh-CCCeeeccHHHH
Confidence 5688999 99999999988 66554 4788999999999999999999999999999999999997 577888999999
Q ss_pred hhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCC-CCCchHHHHHHHHHHhhcCccccCcEEE
Q 007661 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTR-DGTGVHDSIVNQLLTKIDGVESLNNVLL 370 (594)
Q Consensus 292 ~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~-~~~~~~~~~v~~Ll~~ld~~~~~~~v~v 370 (594)
...+.|.....++.+|+.|.... ||||||||+|.++.+++... +.......++++||..||++....+++|
T Consensus 253 ~~~~~g~~~~~vr~lF~~A~~~~--------P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViV 324 (638)
T CHL00176 253 VEMFVGVGAARVRDLFKKAKENS--------PCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIV 324 (638)
T ss_pred HHHhhhhhHHHHHHHHHHHhcCC--------CcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeE
Confidence 99999998999999999998765 56999999999998776432 2234456789999999999988889999
Q ss_pred EEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 007661 371 IGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAV 450 (594)
Q Consensus 371 I~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~ 450 (594)
|++||+++.+|++++|||||+.+|++++|+.++|.+||+.+++... +..++++..+|..|.||+|+||.++|++|+
T Consensus 325 IaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~----~~~d~~l~~lA~~t~G~sgaDL~~lvneAa 400 (638)
T CHL00176 325 IAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK----LSPDVSLELIARRTPGFSGADLANLLNEAA 400 (638)
T ss_pred EEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc----cchhHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998744 567889999999999999999999999999
Q ss_pred HHHHHhccCcccCCCCcccchhhcchhHHHHHHHhc
Q 007661 451 SFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (594)
Q Consensus 451 ~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~ 486 (594)
..+.++. ...++++||..|+..+
T Consensus 401 l~a~r~~-------------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 401 ILTARRK-------------KATITMKEIDTAIDRV 423 (638)
T ss_pred HHHHHhC-------------CCCcCHHHHHHHHHHH
Confidence 8877653 2357888888888765
No 37
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=8.6e-32 Score=301.45 Aligned_cols=244 Identities=35% Similarity=0.575 Sum_probs=212.5
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhh
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL 292 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~ 292 (594)
...|++ ++|++..++++ .+.+.. +..|+.+..++.+.|+|+||+||||||||++++++++++ +.+++.++++++.
T Consensus 148 ~~~~~d--i~g~~~~~~~l-~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~-~~~f~~is~~~~~ 222 (644)
T PRK10733 148 KTTFAD--VAGCDEAKEEV-AELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA-KVPFFTISGSDFV 222 (644)
T ss_pred hCcHHH--HcCHHHHHHHH-HHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc-CCCEEEEehHHhH
Confidence 346787 99999999888 666655 567788888999999999999999999999999999998 4678889999999
Q ss_pred hcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCC-CCCchHHHHHHHHHHhhcCccccCcEEEE
Q 007661 293 SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTR-DGTGVHDSIVNQLLTKIDGVESLNNVLLI 371 (594)
Q Consensus 293 ~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~-~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI 371 (594)
..+.|..+..++++|+.+.... |+||||||+|.++.+++... ++.....+++++||..||++....+++||
T Consensus 223 ~~~~g~~~~~~~~~f~~a~~~~--------P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivI 294 (644)
T PRK10733 223 EMFVGVGASRVRDMFEQAKKAA--------PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVI 294 (644)
T ss_pred HhhhcccHHHHHHHHHHHHhcC--------CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEE
Confidence 9999999999999999998764 56999999999998876532 22344567899999999999988899999
Q ss_pred EeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHH
Q 007661 372 GMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVS 451 (594)
Q Consensus 372 ~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~ 451 (594)
++||+|+.||++++|||||+++|+++.||.++|.+||+.|+++.+ +..++++..+|+.|.||+|+||.++|++|+.
T Consensus 295 aaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~----l~~~~d~~~la~~t~G~sgadl~~l~~eAa~ 370 (644)
T PRK10733 295 AATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP----LAPDIDAAIIARGTPGFSGADLANLVNEAAL 370 (644)
T ss_pred EecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCC----CCCcCCHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998876 6678899999999999999999999999999
Q ss_pred HHHHhccCcccCCCCcccchhhcchhHHHHHHHhc
Q 007661 452 FALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (594)
Q Consensus 452 ~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~ 486 (594)
.|.++. ...++++||.+|+..+
T Consensus 371 ~a~r~~-------------~~~i~~~d~~~a~~~v 392 (644)
T PRK10733 371 FAARGN-------------KRVVSMVEFEKAKDKI 392 (644)
T ss_pred HHHHcC-------------CCcccHHHHHHHHHHH
Confidence 988642 2356777777776654
No 38
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=3.2e-32 Score=315.00 Aligned_cols=212 Identities=16% Similarity=0.156 Sum_probs=177.8
Q ss_pred hhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcc---------------------------
Q 007661 243 PHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKF--------------------------- 295 (594)
Q Consensus 243 ~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~--------------------------- 295 (594)
+....++|+++|+||||+||||||||++||++|.+. +.+++.+++++++.++
T Consensus 1619 kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es-~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1619 KPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNS-YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred cCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhc-CCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 456688999999999999999999999999999997 6888999999998754
Q ss_pred --------------cchhH--HHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhh
Q 007661 296 --------------VGETE--KNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKI 359 (594)
Q Consensus 296 --------------~g~~~--~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~l 359 (594)
.++.+ ..++.+|+.|++.+ ||||||||||+++.+.. ....+++|+..|
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~S--------PCIIFIDEIDaL~~~ds--------~~ltL~qLLneL 1761 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAMS--------PCIIWIPNIHDLNVNES--------NYLSLGLLVNSL 1761 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCC--------CeEEEEEchhhcCCCcc--------ceehHHHHHHHh
Confidence 11222 34899999999985 67999999999986511 122478999999
Q ss_pred cCcc---ccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHH--hccccCCCCCC-cccHHHHHHH
Q 007661 360 DGVE---SLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHT--NKMKENSFLAP-DVNLQELAAR 433 (594)
Q Consensus 360 d~~~---~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~--~~~~~~~~l~~-~~~l~~la~~ 433 (594)
|+.. ...+|+||||||+|+.|||||+||||||+.|+++.|+..+|.+++.+++ ++.. +.. .+++..+|+.
T Consensus 1762 Dg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~----L~~~~vdl~~LA~~ 1837 (2281)
T CHL00206 1762 SRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFH----LEKKMFHTNGFGSI 1837 (2281)
T ss_pred ccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCC----CCcccccHHHHHHh
Confidence 9864 4568999999999999999999999999999999999999999998653 3333 332 3689999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhccc
Q 007661 434 TKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVP 488 (594)
Q Consensus 434 t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~p 488 (594)
|.||+||||.++|.+|++.|+.+. ...|+.+++..|+.++..
T Consensus 1838 T~GfSGADLanLvNEAaliAirq~-------------ks~Id~~~I~~Al~Rq~~ 1879 (2281)
T CHL00206 1838 TMGSNARDLVALTNEALSISITQK-------------KSIIDTNTIRSALHRQTW 1879 (2281)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcC-------------CCccCHHHHHHHHHHHHh
Confidence 999999999999999999999863 356899999999998754
No 39
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=1.4e-31 Score=269.84 Aligned_cols=195 Identities=22% Similarity=0.300 Sum_probs=162.1
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEE
Q 007661 249 LGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIF 328 (594)
Q Consensus 249 ~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~i 328 (594)
+|+++|++++||||||||||++|+++|+++ +..++.++++++.++|+|++++++|++|+.|....... ..||||||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~el-g~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~---~aPcVLFI 218 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKM-GIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKK---GKMSCLFI 218 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHc-CCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhcc---CCCeEEEE
Confidence 678999999999999999999999999998 46788999999999999999999999999998653221 25889999
Q ss_pred ccchhhhccCCCCCCCCchHHHHH-HHHHHhhcCc------------cccCcEEEEEeeCCcccccHHhhCCCCccceee
Q 007661 329 DEIDAICKSRGSTRDGTGVHDSIV-NQLLTKIDGV------------ESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVE 395 (594)
Q Consensus 329 DEid~l~~~~~~~~~~~~~~~~~v-~~Ll~~ld~~------------~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~ 395 (594)
||||+++++++..+ ..+..+++ .+|++.||+. ....+|.||+|||+|+.||++|+|+|||+..+
T Consensus 219 DEIDA~~g~r~~~~--~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i- 295 (413)
T PLN00020 219 NDLDAGAGRFGTTQ--YTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY- 295 (413)
T ss_pred ehhhhcCCCCCCCC--cchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee-
Confidence 99999999987432 23445554 8999999863 23567999999999999999999999999965
Q ss_pred cCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCC----CCHHHHHHHHHHHHHHHHHh
Q 007661 396 ISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKN----YSGAELEGVAKSAVSFALNR 456 (594)
Q Consensus 396 i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g----~sg~dl~~l~~~A~~~a~~r 456 (594)
..|+.++|.+||+.++++.. + +..++..|+..+.| |.|+--..+..++....+.+
T Consensus 296 -~lPd~e~R~eIL~~~~r~~~----l-~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~ 354 (413)
T PLN00020 296 -WAPTREDRIGVVHGIFRDDG----V-SREDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAE 354 (413)
T ss_pred -CCCCHHHHHHHHHHHhccCC----C-CHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 58999999999999999864 3 46788899988876 66776666777766555543
No 40
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=4.2e-32 Score=280.66 Aligned_cols=259 Identities=31% Similarity=0.431 Sum_probs=220.7
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
+++.|++ |+|++..++.+ .+++.+|+..|++|..+ ..+++++||.||||+|||+|++++|.+.. ..+..++.+.+
T Consensus 148 ~~v~~~d--i~gl~~~k~~l-~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~-atff~iSassL 222 (428)
T KOG0740|consen 148 RNVGWDD--IAGLEDAKQSL-KEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESG-ATFFNISASSL 222 (428)
T ss_pred CcccccC--CcchhhHHHHh-hhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhc-ceEeeccHHHh
Confidence 6788988 99999988877 89999999999999865 46788999999999999999999999974 55678999999
Q ss_pred hhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccc--cCcEE
Q 007661 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVES--LNNVL 369 (594)
Q Consensus 292 ~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~--~~~v~ 369 (594)
.++|+|++++.++.+|.-|+..+|+ ||||||+|.++.+|... ..+...++..++|-.+++... ..+|+
T Consensus 223 tsK~~Ge~eK~vralf~vAr~~qPs--------vifidEidslls~Rs~~--e~e~srr~ktefLiq~~~~~s~~~drvl 292 (428)
T KOG0740|consen 223 TSKYVGESEKLVRALFKVARSLQPS--------VIFIDEIDSLLSKRSDN--EHESSRRLKTEFLLQFDGKNSAPDDRVL 292 (428)
T ss_pred hhhccChHHHHHHHHHHHHHhcCCe--------EEEechhHHHHhhcCCc--ccccchhhhhHHHhhhccccCCCCCeEE
Confidence 9999999999999999999999865 99999999999998443 335567888888888887654 34799
Q ss_pred EEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHH
Q 007661 370 LIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSA 449 (594)
Q Consensus 370 vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A 449 (594)
||||||+|+.+|++++| ||...++||+|+.+.|.++|+.++++.+. ...+.|+..|++.|+||+|.||.++|++|
T Consensus 293 vigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~---~l~~~d~~~l~~~Tegysgsdi~~l~kea 367 (428)
T KOG0740|consen 293 VIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPN---GLSDLDISLLAKVTEGYSGSDITALCKEA 367 (428)
T ss_pred EEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCC---CccHHHHHHHHHHhcCcccccHHHHHHHh
Confidence 99999999999999999 99999999999999999999999877621 45677999999999999999999999999
Q ss_pred HHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcccCC
Q 007661 450 VSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAF 490 (594)
Q Consensus 450 ~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ps~ 490 (594)
++.-.+......++..........++..||..+++.+.|+.
T Consensus 368 ~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~ 408 (428)
T KOG0740|consen 368 AMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSV 408 (428)
T ss_pred hcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhcccc
Confidence 98776554332122222234557889999999999998875
No 41
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.96 E-value=3.4e-28 Score=277.33 Aligned_cols=309 Identities=20% Similarity=0.291 Sum_probs=207.5
Q ss_pred ccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhh---------CCCCcEE
Q 007661 215 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKML---------NGMEPKI 285 (594)
Q Consensus 215 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l---------~~~~~~~ 285 (594)
.+++ +.|.++++.+++ +.+.. +...++||+||||||||++|+++|+.+ .+..++.
T Consensus 180 ~l~~--~igr~~ei~~~~-~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 180 KIDP--LIGREDELERTI-QVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred CCCc--ccCcHHHHHHHH-HHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 4555 889999988774 33221 234589999999999999999999987 1345667
Q ss_pred Eecchhh--hcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc
Q 007661 286 VNGPEVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE 363 (594)
Q Consensus 286 v~~~~l~--~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~ 363 (594)
+++..+. .+|.|+.+..++++|+++.... ++||||||+|.+++.+....+ + ..+.+.|...+.
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~--------~~ILfiDEih~l~~~g~~~~~-~---~~~~~~L~~~l~--- 308 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEP--------NAILFIDEIHTIVGAGATSGG-S---MDASNLLKPALS--- 308 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccC--------CeEEEEecHHHHhccCCCCCc-c---HHHHHHHHHHHh---
Confidence 8888887 4899999999999999997653 459999999999976533221 1 112233333332
Q ss_pred ccCcEEEEEeeCCcc-----cccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCC-CCCCcccHHHHHHHcCCC
Q 007661 364 SLNNVLLIGMTNRKD-----MLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENS-FLAPDVNLQELAARTKNY 437 (594)
Q Consensus 364 ~~~~v~vI~~tn~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~-~l~~~~~l~~la~~t~g~ 437 (594)
++.+.+||+||..+ .+|+++.| ||. .|+++.|+.+++.+||+.+...+.... ....+..+..++..++.|
T Consensus 309 -~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ry 384 (731)
T TIGR02639 309 -SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARY 384 (731)
T ss_pred -CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcc
Confidence 46899999999854 37999999 896 799999999999999998766543221 123455677777777766
Q ss_pred CHH-----HHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhc--ccCCCcCCcccccc-----ccCcc
Q 007661 438 SGA-----ELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI--VPAFGASTDDLERS-----RLNGM 505 (594)
Q Consensus 438 sg~-----dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~--~ps~~~~~~~~~~~-----~~~~~ 505 (594)
-+. ..-.++++|+....-+. .......|+.+|+..++..+ .|.......+.... .+...
T Consensus 385 i~~r~~P~kai~lld~a~a~~~~~~---------~~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~ 455 (731)
T TIGR02639 385 INDRFLPDKAIDVIDEAGASFRLRP---------KAKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAK 455 (731)
T ss_pred cccccCCHHHHHHHHHhhhhhhcCc---------ccccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcc
Confidence 543 22345555554321110 00123568999999999987 34332222211111 11222
Q ss_pred eeccchhhHHHHHHHHHHHHH---HhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc
Q 007661 506 VDCGDRHKHIYQRAMLLVEQV---KVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES 570 (594)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~ 570 (594)
+..++ +++..+...+.+. ...+.+|..++||+||||||||+||+++|...+.+|+.+++++.
T Consensus 456 v~GQ~---~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~ 520 (731)
T TIGR02639 456 IFGQD---EAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEY 520 (731)
T ss_pred eeCcH---HHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchh
Confidence 22222 2233322323222 22345677789999999999999999999999999999998874
No 42
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.95 E-value=1.5e-26 Score=260.52 Aligned_cols=308 Identities=20% Similarity=0.286 Sum_probs=200.5
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC---------CCCcEEEecchh
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---------GMEPKIVNGPEV 291 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~---------~~~~~~v~~~~l 291 (594)
+.|.++++.+++ +.+.. ....++||+||||||||++|+.++..+- ...++.++...+
T Consensus 188 liGR~~ei~~~i-~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~l 253 (758)
T PRK11034 188 LIGREKELERAI-QVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL 253 (758)
T ss_pred CcCCCHHHHHHH-HHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHH
Confidence 899999988884 33322 2345789999999999999999998751 223344444555
Q ss_pred h--hcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEE
Q 007661 292 L--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVL 369 (594)
Q Consensus 292 ~--~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~ 369 (594)
+ .+|.|+.+.+++.+|+.+.... +.||||||+|.|++.+....+ ......++..++ .++++.
T Consensus 254 laG~~~~Ge~e~rl~~l~~~l~~~~--------~~ILfIDEIh~L~g~g~~~~g-~~d~~nlLkp~L-------~~g~i~ 317 (758)
T PRK11034 254 LAGTKYRGDFEKRFKALLKQLEQDT--------NSILFIDEIHTIIGAGAASGG-QVDAANLIKPLL-------SSGKIR 317 (758)
T ss_pred hcccchhhhHHHHHHHHHHHHHhcC--------CCEEEeccHHHHhccCCCCCc-HHHHHHHHHHHH-------hCCCeE
Confidence 5 4788999999999999887653 349999999999876543221 111222233333 347899
Q ss_pred EEEeeCCcc-----cccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCC-CCcccHHHHHHHcCCC-----C
Q 007661 370 LIGMTNRKD-----MLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFL-APDVNLQELAARTKNY-----S 438 (594)
Q Consensus 370 vI~~tn~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l-~~~~~l~~la~~t~g~-----s 438 (594)
+||+|+.++ ..|++|.| ||. .|+++.|+.+++.+||+.+..++.....+ ..+..+...+..+..| -
T Consensus 318 vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~l 394 (758)
T PRK11034 318 VIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHL 394 (758)
T ss_pred EEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccC
Confidence 999999976 36999999 996 79999999999999999887776543222 1233344444444443 3
Q ss_pred HHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhc--ccCCCcCCccccc-----cccCcceeccch
Q 007661 439 GAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI--VPAFGASTDDLER-----SRLNGMVDCGDR 511 (594)
Q Consensus 439 g~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~--~ps~~~~~~~~~~-----~~~~~~~~~~~~ 511 (594)
+...-.++.+|+... |.... ......|+.+|+.+.+..+ .|.......+... ..+...+..++.
T Consensus 395 PdKaidlldea~a~~--~~~~~-------~~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ 465 (758)
T PRK11034 395 PDKAIDVIDEAGARA--RLMPV-------SKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDK 465 (758)
T ss_pred hHHHHHHHHHHHHhh--ccCcc-------cccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHH
Confidence 345667888887543 21110 0112358889999888876 3443322222111 012222233332
Q ss_pred hhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc
Q 007661 512 HKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES 570 (594)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~ 570 (594)
..+.+...............+|..++||+||||||||++|+++|...+.+|+.+++++.
T Consensus 466 ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~ 524 (758)
T PRK11034 466 AIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY 524 (758)
T ss_pred HHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhh
Confidence 22222222222222223345677889999999999999999999999999999998875
No 43
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.93 E-value=1.7e-24 Score=249.78 Aligned_cols=320 Identities=19% Similarity=0.249 Sum_probs=202.7
Q ss_pred ccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC---------CCCcEE
Q 007661 215 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---------GMEPKI 285 (594)
Q Consensus 215 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~---------~~~~~~ 285 (594)
.++. +.|.++++++++ +.+. .+...+++|+||||||||++|+.+|..+. +..++.
T Consensus 177 ~~~~--~igr~~ei~~~~-~~L~-------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~ 240 (821)
T CHL00095 177 NLDP--VIGREKEIERVI-QILG-------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT 240 (821)
T ss_pred CCCC--CCCcHHHHHHHH-HHHc-------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 3555 999999998883 3322 23456899999999999999999998863 346777
Q ss_pred Eecchhh--hcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc
Q 007661 286 VNGPEVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE 363 (594)
Q Consensus 286 v~~~~l~--~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~ 363 (594)
++...++ .+|.|+.+.+++.+|+++.... ++||||||+|.+++.++...+ .....+ |...+
T Consensus 241 l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~--------~~ILfiDEih~l~~~g~~~g~--~~~a~l---Lkp~l---- 303 (821)
T CHL00095 241 LDIGLLLAGTKYRGEFEERLKRIFDEIQENN--------NIILVIDEVHTLIGAGAAEGA--IDAANI---LKPAL---- 303 (821)
T ss_pred eeHHHHhccCCCccHHHHHHHHHHHHHHhcC--------CeEEEEecHHHHhcCCCCCCc--ccHHHH---hHHHH----
Confidence 8888877 4889999999999999997643 469999999999876543211 112222 22222
Q ss_pred ccCcEEEEEeeCCccc-----ccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCC-CCcccHHHHHHHcCCC
Q 007661 364 SLNNVLLIGMTNRKDM-----LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFL-APDVNLQELAARTKNY 437 (594)
Q Consensus 364 ~~~~v~vI~~tn~~~~-----ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l-~~~~~l~~la~~t~g~ 437 (594)
.++.+.+||+|+..+. .|+++.+ ||. .|.++.|+.++...|++.....+.....+ .++..+..++..+++|
T Consensus 304 ~rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~y 380 (821)
T CHL00095 304 ARGELQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQY 380 (821)
T ss_pred hCCCcEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Confidence 2478999999998753 6899999 886 58999999999999998765443221111 3445577777777776
Q ss_pred CHH-----HHHHHHHHHHHHH-HHhccCcccC------------------C-CC------------------------c-
Q 007661 438 SGA-----ELEGVAKSAVSFA-LNRQLSMDDL------------------T-KP------------------------V- 467 (594)
Q Consensus 438 sg~-----dl~~l~~~A~~~a-~~r~~~~~~~------------------~-~~------------------------~- 467 (594)
.+. ..-.++.+|+... +......... . +. +
T Consensus 381 i~~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (821)
T CHL00095 381 IADRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKK 460 (821)
T ss_pred CccccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 542 2223444444322 1110000000 0 00 0
Q ss_pred -----ccchhhcchhHHHHHHHhc--ccCCCcCCcccccc-----ccCcceeccchhhHHHHHHHHHHHHHHhcCCCcce
Q 007661 468 -----DEESIKVTMDDFLHALYEI--VPAFGASTDDLERS-----RLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLV 535 (594)
Q Consensus 468 -----~~~~~~vt~~df~~al~~~--~ps~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 535 (594)
......|+.+|+..++... .|.......+.... .+...+.+++.....+.............+.+|..
T Consensus 461 ~~~~~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~ 540 (821)
T CHL00095 461 TEEEKRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIA 540 (821)
T ss_pred hhhcccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCce
Confidence 0001347777777777765 34443332221110 12223333333333333322222223334567778
Q ss_pred EEEeecCCCCchHHHHHHHHhhc---CCCEEEEecccc
Q 007661 536 TCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES 570 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~---~~~fi~v~~~e~ 570 (594)
++||+||||||||+||++||... +.+|+++++++.
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~ 578 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEY 578 (821)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhc
Confidence 89999999999999999999875 578999998775
No 44
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.93 E-value=4.5e-24 Score=245.02 Aligned_cols=189 Identities=17% Similarity=0.281 Sum_probs=134.6
Q ss_pred ccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC---------CCCcEE
Q 007661 215 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---------GMEPKI 285 (594)
Q Consensus 215 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~---------~~~~~~ 285 (594)
.+++ +.|.+.++.+++.. +.. +...+++|+||||||||++|+.+|+.+. +..++.
T Consensus 185 ~ld~--~iGr~~ei~~~i~~-l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 185 KIDP--VLGRDDEIRQMIDI-LLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred CCCc--ccCCHHHHHHHHHH-Hhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 4555 89999987666321 111 2234789999999999999999999873 123455
Q ss_pred Eecchhh--hcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc
Q 007661 286 VNGPEVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE 363 (594)
Q Consensus 286 v~~~~l~--~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~ 363 (594)
++...+. .+|.|+.+..++.+|+++.... .++||||||+|.+++.++.... .. .-+.|+..+
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~-------~~~ILfIDEih~l~~~g~~~~~--~d---~~n~Lkp~l---- 312 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASP-------QPIILFIDEAHTLIGAGGQAGQ--GD---AANLLKPAL---- 312 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcC-------CCeEEEEeChHHhccCCCcccc--cc---HHHHhhHHh----
Confidence 5665555 3788999999999999997532 2569999999999976543211 11 112233332
Q ss_pred ccCcEEEEEeeCCccc-----ccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccC-CCCCCcccHHHHHHHcCCC
Q 007661 364 SLNNVLLIGMTNRKDM-----LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKEN-SFLAPDVNLQELAARTKNY 437 (594)
Q Consensus 364 ~~~~v~vI~~tn~~~~-----ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~-~~l~~~~~l~~la~~t~g~ 437 (594)
.++.+.+||+|+..+. +|++|.| ||. .|.++.|+.+++.+||+.+.+.+... .....+..+..++..+++|
T Consensus 313 ~~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 313 ARGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred hCCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 3578999999998654 8999999 885 79999999999999998776655432 1223456677888888776
Q ss_pred C
Q 007661 438 S 438 (594)
Q Consensus 438 s 438 (594)
.
T Consensus 390 i 390 (852)
T TIGR03345 390 I 390 (852)
T ss_pred c
Confidence 4
No 45
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.91 E-value=1.4e-22 Score=234.60 Aligned_cols=189 Identities=17% Similarity=0.280 Sum_probs=136.0
Q ss_pred ccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC---------CCCcEE
Q 007661 215 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---------GMEPKI 285 (594)
Q Consensus 215 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~---------~~~~~~ 285 (594)
.++. +.|.+.++.+++ +.+. .+...+++|+||||||||++++.++..+. +..++.
T Consensus 171 ~~~~--~igr~~ei~~~~-~~l~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 171 KLDP--VIGRDEEIRRTI-QVLS-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred CCCc--CCCcHHHHHHHH-HHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 4555 899999877763 2221 12345789999999999999999998862 345666
Q ss_pred Eecchhh--hcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc
Q 007661 286 VNGPEVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE 363 (594)
Q Consensus 286 v~~~~l~--~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~ 363 (594)
++...++ .+|.|+.+..++.+|+.+.... .++||||||+|.|++.+....+ ....+.|... -
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~-------~~~ILfIDEih~l~~~g~~~~~-----~d~~~~Lk~~----l 298 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSE-------GQIILFIDELHTLVGAGKAEGA-----MDAGNMLKPA----L 298 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcC-------CCeEEEeccHHHhhcCCCCcch-----hHHHHHhchh----h
Confidence 7766665 4788999999999999986532 2569999999999865432211 1122333222 3
Q ss_pred ccCcEEEEEeeCCccc-----ccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCC-CCcccHHHHHHHcCCC
Q 007661 364 SLNNVLLIGMTNRKDM-----LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFL-APDVNLQELAARTKNY 437 (594)
Q Consensus 364 ~~~~v~vI~~tn~~~~-----ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l-~~~~~l~~la~~t~g~ 437 (594)
.++.+.+||+|+..+. +|+++.| ||. .|.++.|+.+++..||+.+..++.....+ ..+..+..++..+++|
T Consensus 299 ~~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~y 375 (852)
T TIGR03346 299 ARGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRY 375 (852)
T ss_pred hcCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccc
Confidence 4578999999998754 7999999 996 58999999999999999887776543322 2445667777777776
Q ss_pred C
Q 007661 438 S 438 (594)
Q Consensus 438 s 438 (594)
.
T Consensus 376 i 376 (852)
T TIGR03346 376 I 376 (852)
T ss_pred c
Confidence 4
No 46
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=8.9e-23 Score=225.09 Aligned_cols=324 Identities=19% Similarity=0.250 Sum_probs=211.0
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC---------CCCcEEEecchh
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---------GMEPKIVNGPEV 291 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~---------~~~~~~v~~~~l 291 (594)
+.|-++++.++++ .+.. +...+-+|.|+||+|||.++..+|...- +..++.++...+
T Consensus 172 vIGRd~EI~r~iq-IL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~L 237 (786)
T COG0542 172 VIGRDEEIRRTIQ-ILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSL 237 (786)
T ss_pred CcChHHHHHHHHH-HHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHH
Confidence 8999999888743 2222 2233568999999999999999997762 223444555555
Q ss_pred hh--cccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEE
Q 007661 292 LS--KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVL 369 (594)
Q Consensus 292 ~~--~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~ 369 (594)
.. +|-|+.|.+++.+.++..... +.||||||+|.+.+......+ +-....++...|.. +.+.
T Consensus 238 vAGakyRGeFEeRlk~vl~ev~~~~--------~vILFIDEiHtiVGAG~~~G~-a~DAaNiLKPaLAR-------GeL~ 301 (786)
T COG0542 238 VAGAKYRGEFEERLKAVLKEVEKSK--------NVILFIDEIHTIVGAGATEGG-AMDAANLLKPALAR-------GELR 301 (786)
T ss_pred hccccccCcHHHHHHHHHHHHhcCC--------CeEEEEechhhhcCCCccccc-ccchhhhhHHHHhc-------CCeE
Confidence 53 899999999999999998764 459999999999876543221 22233444444443 7899
Q ss_pred EEEeeCCccc-----ccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCC-CCCcccHHHHHHHcCCCCH----
Q 007661 370 LIGMTNRKDM-----LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSF-LAPDVNLQELAARTKNYSG---- 439 (594)
Q Consensus 370 vI~~tn~~~~-----ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~-l~~~~~l~~la~~t~g~sg---- 439 (594)
+||+|+.-+. -|+||-| ||. .|.+..|+.++-..||+-.-.++..... ...|..+...+..++.|-.
T Consensus 302 ~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~L 378 (786)
T COG0542 302 CIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFL 378 (786)
T ss_pred EEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCC
Confidence 9999987654 4899999 886 6899999999999999977665553322 1233344444444443321
Q ss_pred -HHHHHHHHHHHHHHHHhccCccc-----------------------------------CC-C-----Ccccchhhcchh
Q 007661 440 -AELEGVAKSAVSFALNRQLSMDD-----------------------------------LT-K-----PVDEESIKVTMD 477 (594)
Q Consensus 440 -~dl~~l~~~A~~~a~~r~~~~~~-----------------------------------~~-~-----~~~~~~~~vt~~ 477 (594)
.---.++.+|+....-....... +. . ...... .|+.+
T Consensus 379 PDKAIDLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~-~v~~~ 457 (786)
T COG0542 379 PDKAIDLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEA-EVDED 457 (786)
T ss_pred CchHHHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhh-ccCHH
Confidence 11112333333221110000000 00 0 000001 26667
Q ss_pred HHHHHHHhc--ccCCCcCCccccc-----cccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHH
Q 007661 478 DFLHALYEI--VPAFGASTDDLER-----SRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTAL 550 (594)
Q Consensus 478 df~~al~~~--~ps~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~l 550 (594)
++.+++..+ .|...+...+.+. ..+...+..++.....+....+....+...+.+|.+++||.||+|+|||.|
T Consensus 458 ~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTEL 537 (786)
T COG0542 458 DIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTEL 537 (786)
T ss_pred HHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHH
Confidence 787777776 3443332222211 123444555555566666666666677788899999999999999999999
Q ss_pred HHHHHhhcC---CCEEEEecccc---------------ccccccch
Q 007661 551 AATAGIDSD---FPFVKIISAES---------------MIGLHEST 578 (594)
Q Consensus 551 AkalA~~~~---~~fi~v~~~e~---------------~vG~sE~~ 578 (594)
||+||.... -++|++++||. |||+.|..
T Consensus 538 AkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG 583 (786)
T COG0542 538 AKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGG 583 (786)
T ss_pred HHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecccc
Confidence 999998876 99999999998 48887755
No 47
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.90 E-value=2.3e-22 Score=231.69 Aligned_cols=188 Identities=18% Similarity=0.307 Sum_probs=131.5
Q ss_pred ccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC---------CCCcEE
Q 007661 215 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---------GMEPKI 285 (594)
Q Consensus 215 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~---------~~~~~~ 285 (594)
.++. +.|.+.++.+++. .+.. +...+++|+||||||||++|+.+|..+. +..++.
T Consensus 176 ~l~~--vigr~~ei~~~i~-iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 176 KLDP--VIGRDEEIRRTIQ-VLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred CCCc--CCCCHHHHHHHHH-HHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 4555 8999998766632 2111 2334789999999999999999999872 345666
Q ss_pred Eecchhh--hcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc
Q 007661 286 VNGPEVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE 363 (594)
Q Consensus 286 v~~~~l~--~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~ 363 (594)
++...+. .+|.|+.+..++.+|+++.... .++||||||+|.+++.+.... ......+ |... -
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~-------~~~ILfIDEih~l~~~~~~~~--~~d~~~~---lkp~----l 303 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQE-------GNVILFIDELHTMVGAGKADG--AMDAGNM---LKPA----L 303 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcC-------CCeEEEEecHHHhccCCCCcc--chhHHHH---hcch----h
Confidence 7777766 4688999999999999875431 256999999999986653221 1112222 2222 2
Q ss_pred ccCcEEEEEeeCCccc-----ccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCC-CCcccHHHHHHHcCCC
Q 007661 364 SLNNVLLIGMTNRKDM-----LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFL-APDVNLQELAARTKNY 437 (594)
Q Consensus 364 ~~~~v~vI~~tn~~~~-----ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l-~~~~~l~~la~~t~g~ 437 (594)
.++.+.+||+|+..+. +|+++.| ||. .|.++.|+.+++..||+.+..++.....+ ..+..+...+..+++|
T Consensus 304 ~~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry 380 (857)
T PRK10865 304 ARGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRY 380 (857)
T ss_pred hcCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhcc
Confidence 4578999999999874 7999999 997 68899999999999999877665432212 2333444444555544
No 48
>CHL00181 cbbX CbbX; Provisional
Probab=99.89 E-value=5.4e-22 Score=201.40 Aligned_cols=235 Identities=18% Similarity=0.266 Sum_probs=172.1
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCC---ceEEEEcCCCCcHHHHHHHHHHhhC------CCCcEEEecchh
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHV---KGMLLYGPPGTGKTLMARQIGKMLN------GMEPKIVNGPEV 291 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~---~giLL~GppGtGKT~lar~ia~~l~------~~~~~~v~~~~l 291 (594)
++|+++++++| ++.+.. +..+.+..+.|+.++ .++||+||||||||++|+++|+.+. ..+++.++.+++
T Consensus 25 l~Gl~~vK~~i-~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 25 LVGLAPVKTRI-REIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred cCCcHHHHHHH-HHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 99999999998 777665 334577777887654 3589999999999999999998862 234778899999
Q ss_pred hhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEE
Q 007661 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLI 371 (594)
Q Consensus 292 ~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI 371 (594)
.+.|.|+++..++.+|+.+... ||||||+|.+++.++. ......+++.|+..|+.. ..+++||
T Consensus 103 ~~~~~g~~~~~~~~~l~~a~gg-----------VLfIDE~~~l~~~~~~----~~~~~e~~~~L~~~me~~--~~~~~vI 165 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKAMGG-----------VLFIDEAYYLYKPDNE----RDYGSEAIEILLQVMENQ--RDDLVVI 165 (287)
T ss_pred HHHHhccchHHHHHHHHHccCC-----------EEEEEccchhccCCCc----cchHHHHHHHHHHHHhcC--CCCEEEE
Confidence 9999999988888899887543 9999999999754322 234577888899988753 3578888
Q ss_pred EeeCCcc-----cccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHH------cCCCC-H
Q 007661 372 GMTNRKD-----MLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAAR------TKNYS-G 439 (594)
Q Consensus 372 ~~tn~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~------t~g~s-g 439 (594)
++++... .++|+|++ ||+..|+|+.|+.+++.+|++.++++.... +.++ ....+... ...|. +
T Consensus 166 ~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~--l~~~-~~~~L~~~i~~~~~~~~~GNa 240 (287)
T CHL00181 166 FAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQ--LTPE-AEKALLDYIKKRMEQPLFANA 240 (287)
T ss_pred EeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCC--CChh-HHHHHHHHHHHhCCCCCCccH
Confidence 8876532 13699998 999999999999999999999998765422 2222 23333322 23454 8
Q ss_pred HHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHH
Q 007661 440 AELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFL 480 (594)
Q Consensus 440 ~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~ 480 (594)
++++++++.|......|....... .....+-..++.+|+.
T Consensus 241 R~vrn~ve~~~~~~~~r~~~~~~~-~~~~~~l~~~~~~d~~ 280 (287)
T CHL00181 241 RSVRNALDRARMRQANRIFESGGR-VLTKADLVTIEAEDIL 280 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCC-CCCHHHHhCCCHHHHh
Confidence 999999999998888887653211 1111233455566654
No 49
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.88 E-value=2.2e-21 Score=197.18 Aligned_cols=236 Identities=17% Similarity=0.225 Sum_probs=174.9
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCCCC---CceEEEEcCCCCcHHHHHHHHHHhhCC------CCcEEEecchh
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKH---VKGMLLYGPPGTGKTLMARQIGKMLNG------MEPKIVNGPEV 291 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~---~~giLL~GppGtGKT~lar~ia~~l~~------~~~~~v~~~~l 291 (594)
++|+++++++| ++.... +..++...++|+.+ ..++||+||||||||++|+++|+.+.. .+++.++++++
T Consensus 24 l~Gl~~vk~~i-~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 24 LIGLKPVKTRI-REIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred ccCHHHHHHHH-HHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 99999999998 776666 55677778888875 448999999999999999999988732 25778899999
Q ss_pred hhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEE
Q 007661 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLI 371 (594)
Q Consensus 292 ~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI 371 (594)
.+.|.|+++..++++|+.+... +|||||++.+.+.++. ......+++.|+..|+.. ..+++||
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~g-----------vL~iDEi~~L~~~~~~----~~~~~~~~~~Ll~~le~~--~~~~~vI 164 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMGG-----------VLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENQ--RDDLVVI 164 (284)
T ss_pred hHhhcccchHHHHHHHHHccCc-----------EEEEechhhhccCCCc----cchHHHHHHHHHHHHhcC--CCCEEEE
Confidence 9999999998999999987543 9999999998754322 234567788899988743 3578888
Q ss_pred EeeCCc--cc---ccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHH-------cCCCCH
Q 007661 372 GMTNRK--DM---LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAAR-------TKNYSG 439 (594)
Q Consensus 372 ~~tn~~--~~---ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~-------t~g~sg 439 (594)
++++.. +. ++|+|++ ||+..|+||.++.+++.+|++.++++.... + ++..+..+... ..--++
T Consensus 165 ~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~--l-~~~a~~~L~~~l~~~~~~~~~GN~ 239 (284)
T TIGR02880 165 LAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYR--F-SAEAEEAFADYIALRRTQPHFANA 239 (284)
T ss_pred EeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccc--c-CHHHHHHHHHHHHHhCCCCCCChH
Confidence 887653 32 4899999 999999999999999999999998875421 2 22234444443 122358
Q ss_pred HHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHH
Q 007661 440 AELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLH 481 (594)
Q Consensus 440 ~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~ 481 (594)
+++.++++.|......|......- .....+-..++.+|+..
T Consensus 240 R~lrn~ve~~~~~~~~r~~~~~~~-~~~~~~~~~~~~~d~~~ 280 (284)
T TIGR02880 240 RSIRNAIDRARLRQANRLFCDLDR-VLDKSDLETIDPEDLLA 280 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCC-CCCHHHHhCCCHHHHhh
Confidence 999999999998888876543210 01112334566666643
No 50
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.1e-22 Score=194.31 Aligned_cols=216 Identities=24% Similarity=0.359 Sum_probs=166.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhhC--------CCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCC
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQIGKMLN--------GMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSD 322 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l~--------~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~ 322 (594)
+.-.+=||||||||||||+|++++|+.++ ...++.+|+..+++||++++.+.+.++|+........ ...
T Consensus 174 It~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d---~~~ 250 (423)
T KOG0744|consen 174 ITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVED---RGN 250 (423)
T ss_pred eeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhC---CCc
Confidence 34456699999999999999999999984 2245679999999999999999999999998876543 234
Q ss_pred cEEEEEccchhhhccCCCCCC--CCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCC
Q 007661 323 LHVIIFDEIDAICKSRGSTRD--GTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPD 400 (594)
Q Consensus 323 ~~Il~iDEid~l~~~~~~~~~--~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~ 400 (594)
...++|||+++|...|....+ .....-++++.+|++||.+....||++.+|+|-.+.||.|+.. |-|...++++|+
T Consensus 251 lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt 328 (423)
T KOG0744|consen 251 LVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPT 328 (423)
T ss_pred EEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCcc
Confidence 568889999999987744333 2334568999999999999999999999999999999999988 999999999999
Q ss_pred HHHHHHHHHHHHhccccCCCCCCcc--------------cHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHhccCcccCCC
Q 007661 401 ENGRLQILQIHTNKMKENSFLAPDV--------------NLQELAAR-TKNYSGAELEGVAKSAVSFALNRQLSMDDLTK 465 (594)
Q Consensus 401 ~~~r~~IL~~~~~~~~~~~~l~~~~--------------~l~~la~~-t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~ 465 (594)
.+.+++|++.....+-..+.+.... ....++.. +.|.+|+-|..|=-.|...-
T Consensus 329 ~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkLP~Laha~y------------ 396 (423)
T KOG0744|consen 329 AEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTVGLSGRTLRKLPLLAHAEY------------ 396 (423)
T ss_pred HHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhcCCccchHhhhhHHHHHhc------------
Confidence 9999999998877665433222111 12233333 47889988876544433211
Q ss_pred CcccchhhcchhHHHHHHHhc
Q 007661 466 PVDEESIKVTMDDFLHALYEI 486 (594)
Q Consensus 466 ~~~~~~~~vt~~df~~al~~~ 486 (594)
.+...++.++|..|+.+.
T Consensus 397 ---~~~~~v~~~~fl~al~ea 414 (423)
T KOG0744|consen 397 ---FRTFTVDLSNFLLALLEA 414 (423)
T ss_pred ---cCCCccChHHHHHHHHHH
Confidence 123578888998887653
No 51
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=1.1e-20 Score=190.54 Aligned_cols=215 Identities=19% Similarity=0.267 Sum_probs=158.2
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCCC---CCceEEEEcCCCCcHHHHHHHHHHhhC------CCCcEEEecchh
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIK---HVKGMLLYGPPGTGKTLMARQIGKMLN------GMEPKIVNGPEV 291 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~---~~~giLL~GppGtGKT~lar~ia~~l~------~~~~~~v~~~~l 291 (594)
++||+++++++ ++.+..+... ....+.|.. .+.++||+||||||||++|+++|+.+. ...++.++++++
T Consensus 8 ~~Gl~~vk~~i-~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l 85 (261)
T TIGR02881 8 MVGLDEVKALI-KEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADL 85 (261)
T ss_pred hcChHHHHHHH-HHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHh
Confidence 99999999998 7776665443 223345654 345799999999999999999998762 235667889999
Q ss_pred hhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEE
Q 007661 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLI 371 (594)
Q Consensus 292 ~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI 371 (594)
.++|.|+++..++++|+.+.. +||||||+|.|.... ........++.|+..|+.. ..++++|
T Consensus 86 ~~~~~g~~~~~~~~~~~~a~~-----------~VL~IDE~~~L~~~~-----~~~~~~~~i~~Ll~~~e~~--~~~~~vi 147 (261)
T TIGR02881 86 VGEYIGHTAQKTREVIKKALG-----------GVLFIDEAYSLARGG-----EKDFGKEAIDTLVKGMEDN--RNEFVLI 147 (261)
T ss_pred hhhhccchHHHHHHHHHhccC-----------CEEEEechhhhccCC-----ccchHHHHHHHHHHHHhcc--CCCEEEE
Confidence 999999999999999988753 299999999996321 1123456788888888754 3466777
Q ss_pred EeeCCcc-----cccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHc---------CCC
Q 007661 372 GMTNRKD-----MLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAART---------KNY 437 (594)
Q Consensus 372 ~~tn~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t---------~g~ 437 (594)
+++...+ .++|++++ ||...|+++.++.+++.+|++.+++.... ..++..+..+++.. ..-
T Consensus 148 la~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~---~l~~~a~~~l~~~~~~~~~~~~~~~g 222 (261)
T TIGR02881 148 LAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREY---KLTEEAKWKLREHLYKVDQLSSREFS 222 (261)
T ss_pred ecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCC---ccCHHHHHHHHHHHHHHHhccCCCCc
Confidence 6655433 26889988 99989999999999999999988876431 12233344443321 124
Q ss_pred CHHHHHHHHHHHHHHHHHhccCc
Q 007661 438 SGAELEGVAKSAVSFALNRQLSM 460 (594)
Q Consensus 438 sg~dl~~l~~~A~~~a~~r~~~~ 460 (594)
+++.+.+++..|......|.+..
T Consensus 223 n~R~~~n~~e~a~~~~~~r~~~~ 245 (261)
T TIGR02881 223 NARYVRNIIEKAIRRQAVRLLDK 245 (261)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcc
Confidence 68899999999998888776654
No 52
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.84 E-value=3.6e-20 Score=166.35 Aligned_cols=131 Identities=37% Similarity=0.651 Sum_probs=115.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhc
Q 007661 257 MLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICK 336 (594)
Q Consensus 257 iLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~ 336 (594)
|||+||||||||++|+.+|+.+ +.+++.++++++.+.+.++.+..++.+|+.+.... .|+||||||+|.+++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l-~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------~~~vl~iDe~d~l~~ 72 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL-GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSA-------KPCVLFIDEIDKLFP 72 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT-TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTS-------TSEEEEEETGGGTSH
T ss_pred CEEECcCCCCeeHHHHHHHhhc-ccccccccccccccccccccccccccccccccccc-------cceeeeeccchhccc
Confidence 6999999999999999999998 57788999999999999999999999999998764 256999999999998
Q ss_pred cCCCCCCCCchHHHHHHHHHHhhcCcccc-CcEEEEEeeCCcccccHHhhCCCCccceeecCC
Q 007661 337 SRGSTRDGTGVHDSIVNQLLTKIDGVESL-NNVLLIGMTNRKDMLDEALLRPGRLEVQVEISL 398 (594)
Q Consensus 337 ~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~-~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~ 398 (594)
+. ..........++++|+..++..... .++++|++||.++.++++++| +||+..|++++
T Consensus 73 ~~--~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 73 KS--QPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HC--STSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cc--ccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 87 2234466788999999999988765 569999999999999999998 89999999874
No 53
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.2e-19 Score=182.38 Aligned_cols=189 Identities=30% Similarity=0.459 Sum_probs=142.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccc
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEI 331 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEi 331 (594)
.+-++||+|||||||||++||.+|... +..+....+.++.-. -.+....+.++|+-++...+ .-+|||||.
T Consensus 382 apfRNilfyGPPGTGKTm~ArelAr~S-GlDYA~mTGGDVAPl-G~qaVTkiH~lFDWakkS~r-------GLllFIDEA 452 (630)
T KOG0742|consen 382 APFRNILFYGPPGTGKTMFARELARHS-GLDYAIMTGGDVAPL-GAQAVTKIHKLFDWAKKSRR-------GLLLFIDEA 452 (630)
T ss_pred chhhheeeeCCCCCCchHHHHHHHhhc-CCceehhcCCCcccc-chHHHHHHHHHHHHHhhccc-------ceEEEehhh
Confidence 345689999999999999999999984 666666666655321 22445679999999987643 349999999
Q ss_pred hhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHH
Q 007661 332 DAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIH 411 (594)
Q Consensus 332 d~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~ 411 (594)
|+++..|...- -++..+..++.||-... ....+++++.+||+|.++|.++.. |++..|+||+|.+++|..+|..|
T Consensus 453 DAFLceRnkty-mSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lY 527 (630)
T KOG0742|consen 453 DAFLCERNKTY-MSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLY 527 (630)
T ss_pred HHHHHHhchhh-hcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHH
Confidence 99988876532 24566777888876533 345679999999999999999987 99999999999999999999988
Q ss_pred HhccccCCC--------------------CC---CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 007661 412 TNKMKENSF--------------------LA---PDVNLQELAARTKNYSGAELEGVAKSAVSFAL 454 (594)
Q Consensus 412 ~~~~~~~~~--------------------l~---~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~ 454 (594)
+.+.-.... +. .+.-+.+.|+.|.||+|++|..|+......+.
T Consensus 528 lnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQAavY 593 (630)
T KOG0742|consen 528 LNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQAAVY 593 (630)
T ss_pred HHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHh
Confidence 876431110 00 11125678999999999999998775544343
No 54
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.83 E-value=6.3e-19 Score=190.07 Aligned_cols=223 Identities=13% Similarity=0.129 Sum_probs=146.7
Q ss_pred cEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHH
Q 007661 323 LHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDEN 402 (594)
Q Consensus 323 ~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~ 402 (594)
|.++++.|+|.++.. .... +.+..|.... ....+.+|+.+.+ -.+++.|.+ +-..+++|+|+.+
T Consensus 82 ~~~~vl~d~h~~~~~-------~~~~-r~l~~l~~~~---~~~~~~~i~~~~~--~~~p~el~~---~~~~~~~~lP~~~ 145 (489)
T CHL00195 82 PALFLLKDFNRFLND-------ISIS-RKLRNLSRIL---KTQPKTIIIIASE--LNIPKELKD---LITVLEFPLPTES 145 (489)
T ss_pred CcEEEEecchhhhcc-------hHHH-HHHHHHHHHH---HhCCCEEEEEcCC--CCCCHHHHh---ceeEEeecCcCHH
Confidence 569999999999821 1222 2223333322 2334444444432 246777775 4457899999999
Q ss_pred HHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHH
Q 007661 403 GRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHA 482 (594)
Q Consensus 403 ~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~a 482 (594)
++.++++....... ...++.+++.+++.+.|++-.+++.++..+... . ..++.+++...
T Consensus 146 ei~~~l~~~~~~~~---~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~--~----------------~~~~~~~~~~i 204 (489)
T CHL00195 146 EIKKELTRLIKSLN---IKIDSELLENLTRACQGLSLERIRRVLSKIIAT--Y----------------KTIDENSIPLI 204 (489)
T ss_pred HHHHHHHHHHHhcC---CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--c----------------CCCChhhHHHH
Confidence 99999987765332 134566789999999999999999888765421 1 11233332222
Q ss_pred HHhcccCC----Cc--CCccccccccCcceeccchhhHHHHHHHHH----HHHHHhcCCCcceEEEeecCCCCchHHHHH
Q 007661 483 LYEIVPAF----GA--STDDLERSRLNGMVDCGDRHKHIYQRAMLL----VEQVKVSKGSPLVTCLLEGPSGSGKTALAA 552 (594)
Q Consensus 483 l~~~~ps~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~gvLL~GPpG~GKT~lAk 552 (594)
+++..... .. ......+..++|+ +.++.|+... .......+..+|+|+|||||||||||++||
T Consensus 205 ~~~k~q~~~~~~~le~~~~~~~~~dvgGl-------~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAk 277 (489)
T CHL00195 205 LEEKKQIISQTEILEFYSVNEKISDIGGL-------DNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAK 277 (489)
T ss_pred HHHHHHHHhhhccccccCCCCCHHHhcCH-------HHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHH
Confidence 22111100 00 0112233344443 3344444433 334456788999999999999999999999
Q ss_pred HHHhhcCCCEEEEeccccc---cccccchhhhHHHHHHHhhhcC
Q 007661 553 TAGIDSDFPFVKIISAESM---IGLHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 553 alA~~~~~~fi~v~~~e~~---vG~sE~~~~~~ir~~F~~A~~~ 593 (594)
++|++++++|+.++.++++ +|++|++ ++++|+.|++.
T Consensus 278 aiA~e~~~~~~~l~~~~l~~~~vGese~~----l~~~f~~A~~~ 317 (489)
T CHL00195 278 AIANDWQLPLLRLDVGKLFGGIVGESESR----MRQMIRIAEAL 317 (489)
T ss_pred HHHHHhCCCEEEEEhHHhcccccChHHHH----HHHHHHHHHhc
Confidence 9999999999999998875 9999998 99999998864
No 55
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=6.2e-19 Score=181.54 Aligned_cols=204 Identities=20% Similarity=0.313 Sum_probs=149.4
Q ss_pred cccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh
Q 007661 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (594)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~ 293 (594)
-+|+. ..|+..+++-+.+-+...+...+.+++.|..=.+|.|||||||||||+++.|+|+.++ ..++-++.++..
T Consensus 198 stF~T---laMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~-ydIydLeLt~v~- 272 (457)
T KOG0743|consen 198 STFET---LAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN-YDIYDLELTEVK- 272 (457)
T ss_pred CCccc---cccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC-CceEEeeecccc-
Confidence 56765 3444444433366677788899999999999999999999999999999999999994 555555554432
Q ss_pred cccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCC---Cc--hHHHHHHHHHHhhcCccccC--
Q 007661 294 KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDG---TG--VHDSIVNQLLTKIDGVESLN-- 366 (594)
Q Consensus 294 ~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~---~~--~~~~~v~~Ll~~ld~~~~~~-- 366 (594)
.... ++.++..+... +||+|+|||+-+..++..... .+ ...-.+..||+.+||+.+..
T Consensus 273 ----~n~d-Lr~LL~~t~~k----------SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ 337 (457)
T KOG0743|consen 273 ----LDSD-LRHLLLATPNK----------SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGD 337 (457)
T ss_pred ----CcHH-HHHHHHhCCCC----------cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCC
Confidence 2222 78887776554 399999999876543332221 11 12245788999999998877
Q ss_pred cEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCC--CCHHHHH
Q 007661 367 NVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKN--YSGAELE 443 (594)
Q Consensus 367 ~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g--~sg~dl~ 443 (594)
.-++|.|||.++.|||||+||||+|.+|+++.-+.++-..+++.++.--. +..-+.++.+..++ .++||+.
T Consensus 338 ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~------~h~L~~eie~l~~~~~~tPA~V~ 410 (457)
T KOG0743|consen 338 ERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE------DHRLFDEIERLIEETEVTPAQVA 410 (457)
T ss_pred ceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC------CcchhHHHHHHhhcCccCHHHHH
Confidence 67899999999999999999999999999999999999888888775321 12223333333333 5888874
No 56
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=3.9e-19 Score=177.21 Aligned_cols=94 Identities=21% Similarity=0.290 Sum_probs=85.5
Q ss_pred ccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc---c
Q 007661 495 DDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES---M 571 (594)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~---~ 571 (594)
+++...+++|+.+-...+.+.++.++.+++.|...++.||+|||||||||||||+||||+|++.+++||+|.|||+ |
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKY 225 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKY 225 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHH
Confidence 4455567788888777888999999999999999999999999999999999999999999999999999999999 6
Q ss_pred cccccchhhhHHHHHHHhhhc
Q 007661 572 IGLHESTKCAQIVKVSECQFS 592 (594)
Q Consensus 572 vG~sE~~~~~~ir~~F~~A~~ 592 (594)
|||+-+= +|++|+-||.
T Consensus 226 iGEGaRl----VRelF~lAre 242 (406)
T COG1222 226 IGEGARL----VRELFELARE 242 (406)
T ss_pred hccchHH----HHHHHHHHhh
Confidence 9977764 9999999985
No 57
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.75 E-value=2.3e-17 Score=157.30 Aligned_cols=189 Identities=21% Similarity=0.336 Sum_probs=120.0
Q ss_pred cccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh
Q 007661 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (594)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~ 293 (594)
-+|++ +.|.+..+..+ +-.+...... -.+..++|||||||+||||+|+.+|++++ ..+...+++.+-.
T Consensus 21 ~~L~e--fiGQ~~l~~~l-~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~-~~~~~~sg~~i~k 88 (233)
T PF05496_consen 21 KSLDE--FIGQEHLKGNL-KILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELG-VNFKITSGPAIEK 88 (233)
T ss_dssp SSCCC--S-S-HHHHHHH-HHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT---EEEEECCC--S
T ss_pred CCHHH--ccCcHHHHhhh-HHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccC-CCeEeccchhhhh
Confidence 47888 99999998887 4444322111 12345799999999999999999999984 5667777764321
Q ss_pred cccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc----------
Q 007661 294 KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE---------- 363 (594)
Q Consensus 294 ~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~---------- 363 (594)
...+..++..... ..||||||||.+. ..+...|+..|+...
T Consensus 89 ------~~dl~~il~~l~~----------~~ILFIDEIHRln-------------k~~qe~LlpamEd~~idiiiG~g~~ 139 (233)
T PF05496_consen 89 ------AGDLAAILTNLKE----------GDILFIDEIHRLN-------------KAQQEILLPAMEDGKIDIIIGKGPN 139 (233)
T ss_dssp ------CHHHHHHHHT--T----------T-EEEECTCCC---------------HHHHHHHHHHHHCSEEEEEBSSSSS
T ss_pred ------HHHHHHHHHhcCC----------CcEEEEechhhcc-------------HHHHHHHHHHhccCeEEEEeccccc
Confidence 1233344443332 3499999999985 234455666666431
Q ss_pred ------ccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCC
Q 007661 364 ------SLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNY 437 (594)
Q Consensus 364 ------~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~ 437 (594)
...++.+||+|++...|.+.|+. ||.....+..++.++..+|++.-.+.+... .++....++|.++.|
T Consensus 140 ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~---i~~~~~~~Ia~rsrG- 213 (233)
T PF05496_consen 140 ARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIE---IDEDAAEEIARRSRG- 213 (233)
T ss_dssp -BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-E---E-HHHHHHHHHCTTT-
T ss_pred cceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCC---cCHHHHHHHHHhcCC-
Confidence 12358999999999999999988 999988999999999999998665554421 234457889999987
Q ss_pred CHHHHHHHHHHH
Q 007661 438 SGAELEGVAKSA 449 (594)
Q Consensus 438 sg~dl~~l~~~A 449 (594)
+++-...+++++
T Consensus 214 tPRiAnrll~rv 225 (233)
T PF05496_consen 214 TPRIANRLLRRV 225 (233)
T ss_dssp SHHHHHHHHHHH
T ss_pred ChHHHHHHHHHH
Confidence 677666666654
No 58
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.69 E-value=1.4e-15 Score=157.14 Aligned_cols=211 Identities=21% Similarity=0.303 Sum_probs=142.4
Q ss_pred ccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhc
Q 007661 215 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSK 294 (594)
Q Consensus 215 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~ 294 (594)
+|++ +.|.+++++++ +.++...... -..+.+++|+||||||||++|+++|+++. ..+..++++....
T Consensus 2 ~~~~--~iG~~~~~~~l-~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~-~~~~~~~~~~~~~- 68 (305)
T TIGR00635 2 LLAE--FIGQEKVKEQL-QLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMG-VNLKITSGPALEK- 68 (305)
T ss_pred CHHH--HcCHHHHHHHH-HHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhC-CCEEEeccchhcC-
Confidence 4777 99999999988 6665432221 13456799999999999999999999985 3444444432211
Q ss_pred ccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc-----------
Q 007661 295 FVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE----------- 363 (594)
Q Consensus 295 ~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~----------- 363 (594)
...+...+.... .+.+|||||+|.+.+. ..+.|+..|+...
T Consensus 69 -----~~~l~~~l~~~~----------~~~vl~iDEi~~l~~~-------------~~e~l~~~~~~~~~~~v~~~~~~~ 120 (305)
T TIGR00635 69 -----PGDLAAILTNLE----------EGDVLFIDEIHRLSPA-------------VEELLYPAMEDFRLDIVIGKGPSA 120 (305)
T ss_pred -----chhHHHHHHhcc----------cCCEEEEehHhhhCHH-------------HHHHhhHHHhhhheeeeeccCccc
Confidence 112222222221 2359999999998532 1122333332211
Q ss_pred -----ccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCC
Q 007661 364 -----SLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYS 438 (594)
Q Consensus 364 -----~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~s 438 (594)
....+.+|++||++..+++++++ ||...+.+++|+.+++.+|++...+.... ..++..+..+++.+.|+.
T Consensus 121 ~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~---~~~~~al~~ia~~~~G~p 195 (305)
T TIGR00635 121 RSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNV---EIEPEAALEIARRSRGTP 195 (305)
T ss_pred cceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHHhCCCc
Confidence 12348899999999999999988 88888999999999999999988765331 234556788999998865
Q ss_pred HHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHh
Q 007661 439 GAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYE 485 (594)
Q Consensus 439 g~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~ 485 (594)
+.+..++..+...|... +...++.+++..++..
T Consensus 196 -R~~~~ll~~~~~~a~~~-------------~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 196 -RIANRLLRRVRDFAQVR-------------GQKIINRDIALKALEM 228 (305)
T ss_pred -chHHHHHHHHHHHHHHc-------------CCCCcCHHHHHHHHHH
Confidence 67777888766555332 1234677777777766
No 59
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.68 E-value=1.6e-15 Score=158.06 Aligned_cols=213 Identities=20% Similarity=0.278 Sum_probs=146.0
Q ss_pred cccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh
Q 007661 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (594)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~ 293 (594)
-+|++ +.|.++.++.+ +.++..... .-.++.++|||||||||||++|+++|+++. ..+..++++.+.
T Consensus 22 ~~~~~--~vG~~~~~~~l-~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~-~~~~~~~~~~~~- 88 (328)
T PRK00080 22 KSLDE--FIGQEKVKENL-KIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMG-VNIRITSGPALE- 88 (328)
T ss_pred CCHHH--hcCcHHHHHHH-HHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhC-CCeEEEeccccc-
Confidence 37888 99999999887 555532211 123567899999999999999999999985 445555554321
Q ss_pred cccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc----------
Q 007661 294 KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE---------- 363 (594)
Q Consensus 294 ~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~---------- 363 (594)
....+..++.... .+++|||||+|.+.+. .... |...|+...
T Consensus 89 -----~~~~l~~~l~~l~----------~~~vl~IDEi~~l~~~----------~~e~---l~~~~e~~~~~~~l~~~~~ 140 (328)
T PRK00080 89 -----KPGDLAAILTNLE----------EGDVLFIDEIHRLSPV----------VEEI---LYPAMEDFRLDIMIGKGPA 140 (328)
T ss_pred -----ChHHHHHHHHhcc----------cCCEEEEecHhhcchH----------HHHH---HHHHHHhcceeeeeccCcc
Confidence 1223444444322 2459999999998521 1222 223232110
Q ss_pred ------ccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCC
Q 007661 364 ------SLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNY 437 (594)
Q Consensus 364 ------~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~ 437 (594)
...++.+|++||++..++++|++ ||...++++.|+.+++.+|++........ ..++..+..+++.+.|.
T Consensus 141 ~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~---~~~~~~~~~ia~~~~G~ 215 (328)
T PRK00080 141 ARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGV---EIDEEGALEIARRSRGT 215 (328)
T ss_pred ccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHcCCC
Confidence 12347899999999999999988 89889999999999999999988776432 23445688999999885
Q ss_pred CHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhc
Q 007661 438 SGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (594)
Q Consensus 438 sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~ 486 (594)
. +.+..+++.+..++..+ ....++.+++..++..+
T Consensus 216 p-R~a~~~l~~~~~~a~~~-------------~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 216 P-RIANRLLRRVRDFAQVK-------------GDGVITKEIADKALDML 250 (328)
T ss_pred c-hHHHHHHHHHHHHHHHc-------------CCCCCCHHHHHHHHHHh
Confidence 5 77888888777666532 12346777777777654
No 60
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.67 E-value=1.7e-15 Score=146.90 Aligned_cols=196 Identities=21% Similarity=0.324 Sum_probs=143.1
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhh
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL 292 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~ 292 (594)
.-+|++ ..|.++.++++ +-.+....... ...-++|||||||.||||||..+|+++ +..+...+++.+.
T Consensus 22 P~~l~e--fiGQ~~vk~~L-~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Em-gvn~k~tsGp~le 89 (332)
T COG2255 22 PKTLDE--FIGQEKVKEQL-QIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANEL-GVNLKITSGPALE 89 (332)
T ss_pred cccHHH--hcChHHHHHHH-HHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHh-cCCeEeccccccc
Confidence 346777 89999998888 54444332222 344579999999999999999999999 4667777777553
Q ss_pred hcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc---------
Q 007661 293 SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE--------- 363 (594)
Q Consensus 293 ~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~--------- 363 (594)
....+..++...+.+ +||||||||++.+. .. +-|...|+.+.
T Consensus 90 ------K~gDlaaiLt~Le~~----------DVLFIDEIHrl~~~----------vE---E~LYpaMEDf~lDI~IG~gp 140 (332)
T COG2255 90 ------KPGDLAAILTNLEEG----------DVLFIDEIHRLSPA----------VE---EVLYPAMEDFRLDIIIGKGP 140 (332)
T ss_pred ------ChhhHHHHHhcCCcC----------CeEEEehhhhcChh----------HH---HHhhhhhhheeEEEEEccCC
Confidence 233444555544443 49999999998642 22 23444554331
Q ss_pred -------ccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCC
Q 007661 364 -------SLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKN 436 (594)
Q Consensus 364 -------~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g 436 (594)
....+.+||+|.+..+|...|+. ||.....+..++.++..+|++...+.+... ..+....++|+++.|
T Consensus 141 ~Arsv~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~---i~~~~a~eIA~rSRG 215 (332)
T COG2255 141 AARSIRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIE---IDEEAALEIARRSRG 215 (332)
T ss_pred ccceEeccCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCC---CChHHHHHHHHhccC
Confidence 13468999999999999999988 999999999999999999999877666522 244467889999988
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 007661 437 YSGAELEGVAKSAVSFALN 455 (594)
Q Consensus 437 ~sg~dl~~l~~~A~~~a~~ 455 (594)
+++-...|+++..-+|.-
T Consensus 216 -TPRIAnRLLrRVRDfa~V 233 (332)
T COG2255 216 -TPRIANRLLRRVRDFAQV 233 (332)
T ss_pred -CcHHHHHHHHHHHHHHHH
Confidence 666666777777766653
No 61
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.67 E-value=9.2e-16 Score=176.43 Aligned_cols=234 Identities=25% Similarity=0.266 Sum_probs=147.6
Q ss_pred CccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhh-------
Q 007661 220 GIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL------- 292 (594)
Q Consensus 220 ~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~------- 292 (594)
++.|+++.++.| .+.+..+... +-.....+||+||||||||++|+++|+.+. .++..+++..+.
T Consensus 321 ~~~G~~~~k~~i-~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~-~~~~~i~~~~~~~~~~i~g 391 (775)
T TIGR00763 321 DHYGLKKVKERI-LEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALN-RKFVRFSLGGVRDEAEIRG 391 (775)
T ss_pred hcCChHHHHHHH-HHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhc-CCeEEEeCCCcccHHHHcC
Confidence 388999999888 4544433211 112334799999999999999999999984 555555543321
Q ss_pred --hcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcC-----c---
Q 007661 293 --SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG-----V--- 362 (594)
Q Consensus 293 --~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~-----~--- 362 (594)
..|.|.....+.+.|..+.... .||||||||.+.+...+ ...+.|+..+|. +
T Consensus 392 ~~~~~~g~~~g~i~~~l~~~~~~~---------~villDEidk~~~~~~~---------~~~~aLl~~ld~~~~~~f~d~ 453 (775)
T TIGR00763 392 HRRTYVGAMPGRIIQGLKKAKTKN---------PLFLLDEIDKIGSSFRG---------DPASALLEVLDPEQNNAFSDH 453 (775)
T ss_pred CCCceeCCCCchHHHHHHHhCcCC---------CEEEEechhhcCCccCC---------CHHHHHHHhcCHHhcCccccc
Confidence 3577777778888887765432 28999999999853211 123445555542 1
Q ss_pred -----cccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhcc--ccCC-----CCCCcccHHHH
Q 007661 363 -----ESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKM--KENS-----FLAPDVNLQEL 430 (594)
Q Consensus 363 -----~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~--~~~~-----~l~~~~~l~~l 430 (594)
....++++|+|||.++.|+++|++ ||. .|+++.|+.+++.+|++.++... ..++ ...++..+..|
T Consensus 454 ~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i 530 (775)
T TIGR00763 454 YLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLL 530 (775)
T ss_pred cCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHH
Confidence 112578999999999999999998 885 78999999999999999876211 1111 11233345566
Q ss_pred HH-HcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHH
Q 007661 431 AA-RTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALY 484 (594)
Q Consensus 431 a~-~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~ 484 (594)
++ .+..+..++|+..+...+..+..+.+....... .......++.+++.+-+.
T Consensus 531 ~~~~~~e~g~R~l~r~i~~~~~~~~~~~~~~~~~~~-~~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 531 IKYYTREAGVRNLERQIEKICRKAAVKLVEQGEKKK-SEAESVVITPDNLKKYLG 584 (775)
T ss_pred HHhcChhcCChHHHHHHHHHHHHHHHHHHhccCccc-CCcccccCCHHHHHHhcC
Confidence 55 333445577766655555544443332111000 001124677777766554
No 62
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.62 E-value=3.9e-14 Score=150.06 Aligned_cols=230 Identities=21% Similarity=0.248 Sum_probs=145.9
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCC--------CCc
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG--------MEP 283 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~--------~~~ 283 (594)
+++..++ +.|.++++++| ...+...+. | ..+.+++|+||||||||++++++++.+.. ..+
T Consensus 10 ~~~~p~~--l~gRe~e~~~l-~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~ 77 (365)
T TIGR02928 10 PDYVPDR--IVHRDEQIEEL-AKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVT 77 (365)
T ss_pred CCCCCCC--CCCcHHHHHHH-HHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEE
Confidence 5555666 99999999999 555543221 1 34467999999999999999999987631 245
Q ss_pred EEEecchhhhc----------cc--c--------hhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCC
Q 007661 284 KIVNGPEVLSK----------FV--G--------ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRD 343 (594)
Q Consensus 284 ~~v~~~~l~~~----------~~--g--------~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~ 343 (594)
++++|....+. .. | ........+++..... ..+.||+|||+|.+...
T Consensus 78 v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~vlvIDE~d~L~~~------ 144 (365)
T TIGR02928 78 VYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNER-------GDSLIIVLDEIDYLVGD------ 144 (365)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhc-------CCeEEEEECchhhhccC------
Confidence 66777543321 00 1 0122233344433221 23569999999999721
Q ss_pred CCchHHHHHHHHHHhhcCcc-ccCcEEEEEeeCCcc---cccHHhhCCCCcc-ceeecCCCCHHHHHHHHHHHHhccccC
Q 007661 344 GTGVHDSIVNQLLTKIDGVE-SLNNVLLIGMTNRKD---MLDEALLRPGRLE-VQVEISLPDENGRLQILQIHTNKMKEN 418 (594)
Q Consensus 344 ~~~~~~~~v~~Ll~~ld~~~-~~~~v~vI~~tn~~~---~ld~al~r~gRf~-~~i~i~~P~~~~r~~IL~~~~~~~~~~ 418 (594)
.+.++.+|+...+... ...++.+|+++|.++ .+++.+.+ ||. ..++|++++.++..+|++.+++.....
T Consensus 145 ----~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~ 218 (365)
T TIGR02928 145 ----DDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYD 218 (365)
T ss_pred ----CcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccC
Confidence 1235556655422111 225789999999886 47888877 664 679999999999999999887632111
Q ss_pred CCCCCcccHHHHH---HHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcc
Q 007661 419 SFLAPDVNLQELA---ARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 487 (594)
Q Consensus 419 ~~l~~~~~l~~la---~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 487 (594)
. ..++..++.++ ..+.| ..+.+-.+|+.|...|..+. ...|+.+|+..|+....
T Consensus 219 ~-~~~~~~l~~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~-------------~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 219 G-VLDDGVIPLCAALAAQEHG-DARKAIDLLRVAGEIAEREG-------------AERVTEDHVEKAQEKIE 275 (365)
T ss_pred C-CCChhHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC-------------CCCCCHHHHHHHHHHHH
Confidence 1 12222234433 44445 34555668888888776542 24588999998888763
No 63
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4.4e-16 Score=147.88 Aligned_cols=95 Identities=19% Similarity=0.254 Sum_probs=85.8
Q ss_pred CccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc---
Q 007661 494 TDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES--- 570 (594)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~--- 570 (594)
.+++...+++|+.--+....+.++.++.+.+.+++.++.||.|+|||||||||||+||||+|+.....||+|.|+|-
T Consensus 149 kpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqk 228 (408)
T KOG0727|consen 149 KPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 228 (408)
T ss_pred CCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHH
Confidence 34566667888887777888889999999999999999999999999999999999999999999999999999997
Q ss_pred ccccccchhhhHHHHHHHhhhc
Q 007661 571 MIGLHESTKCAQIVKVSECQFS 592 (594)
Q Consensus 571 ~vG~sE~~~~~~ir~~F~~A~~ 592 (594)
|.||.-+- +|++|+.|+.
T Consensus 229 ylgegprm----vrdvfrlake 246 (408)
T KOG0727|consen 229 YLGEGPRM----VRDVFRLAKE 246 (408)
T ss_pred HhccCcHH----HHHHHHHHhc
Confidence 69988886 9999999985
No 64
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.61 E-value=3.5e-14 Score=144.33 Aligned_cols=177 Identities=25% Similarity=0.379 Sum_probs=121.6
Q ss_pred ccccccCCccCcHHHHH--HHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecch
Q 007661 213 EFNLQSLGIGGLSAEFA--DIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 290 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~--~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~ 290 (594)
.-++++ +.|.+.-+. .+++++++. .+..+++|||||||||||+|+.||..++ ..+..++..
T Consensus 20 P~~lde--~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~-~~f~~~sAv- 82 (436)
T COG2256 20 PKSLDE--VVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTN-AAFEALSAV- 82 (436)
T ss_pred CCCHHH--hcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhC-CceEEeccc-
Confidence 346777 888776542 234666653 3345799999999999999999999985 445555542
Q ss_pred hhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEE
Q 007661 291 VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLL 370 (594)
Q Consensus 291 l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~v 370 (594)
-..-+.++++++.|++.... | ...||||||||.+.+. -...||..++ .+.+++
T Consensus 83 ------~~gvkdlr~i~e~a~~~~~~-g---r~tiLflDEIHRfnK~-------------QQD~lLp~vE----~G~iil 135 (436)
T COG2256 83 ------TSGVKDLREIIEEARKNRLL-G---RRTILFLDEIHRFNKA-------------QQDALLPHVE----NGTIIL 135 (436)
T ss_pred ------cccHHHHHHHHHHHHHHHhc-C---CceEEEEehhhhcChh-------------hhhhhhhhhc----CCeEEE
Confidence 24457899999999765432 1 1359999999998532 1234666654 367889
Q ss_pred EEee--CCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccc----cCCCCCCcccHHHHHHHcCC
Q 007661 371 IGMT--NRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMK----ENSFLAPDVNLQELAARTKN 436 (594)
Q Consensus 371 I~~t--n~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~----~~~~l~~~~~l~~la~~t~g 436 (594)
||+| |+.-.|.++|+++.| .+++.+.+.++..++++.-+.... ......++..+..++..+.|
T Consensus 136 IGATTENPsF~ln~ALlSR~~---vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G 204 (436)
T COG2256 136 IGATTENPSFELNPALLSRAR---VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG 204 (436)
T ss_pred EeccCCCCCeeecHHHhhhhh---eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc
Confidence 9988 334469999999666 789999999999999987332222 11112244456777887766
No 65
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=3.7e-16 Score=149.50 Aligned_cols=96 Identities=22% Similarity=0.289 Sum_probs=85.4
Q ss_pred CccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc---
Q 007661 494 TDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES--- 570 (594)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~--- 570 (594)
.+++...+++|.-+--+.+.++++.++.+++.|-+.++.||+|||||||||||||++|+|+|+..+.-||+|.|+|+
T Consensus 171 kpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqk 250 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQK 250 (435)
T ss_pred CCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHH
Confidence 34555666777766667788999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhHHHHHHHhhhcC
Q 007661 571 MIGLHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 571 ~vG~sE~~~~~~ir~~F~~A~~~ 593 (594)
||||.-+- +|++|+.||.-
T Consensus 251 yvgegarm----vrelf~martk 269 (435)
T KOG0729|consen 251 YVGEGARM----VRELFEMARTK 269 (435)
T ss_pred HhhhhHHH----HHHHHHHhccc
Confidence 69977665 99999999864
No 66
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.60 E-value=4.2e-14 Score=151.73 Aligned_cols=206 Identities=20% Similarity=0.333 Sum_probs=130.2
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC----CCCcEEEe
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN----GMEPKIVN 287 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~----~~~~~~v~ 287 (594)
+.++|++.-+|.-........+..... | + ....+++||||||||||+|++++++++. +..+++++
T Consensus 105 ~~~tfd~fi~g~~n~~a~~~~~~~~~~----~------~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 105 PKYTFDNFVVGKSNRLAHAAALAVAEN----P------G-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCCcccccccCCcHHHHHHHHHHHHhC----c------C-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 788999864444333222222222221 1 1 2335689999999999999999999873 34577888
Q ss_pred cchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCc
Q 007661 288 GPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNN 367 (594)
Q Consensus 288 ~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~ 367 (594)
+.++...+..........-|...... +++|+|||++.+..+. ... ..|+..++.+...+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~dlLiiDDi~~l~~~~--------~~~---~~l~~~~n~~~~~~~ 233 (405)
T TIGR00362 174 SEKFTNDFVNALRNNKMEEFKEKYRS---------VDLLLIDDIQFLAGKE--------RTQ---EEFFHTFNALHENGK 233 (405)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh---------CCEEEEehhhhhcCCH--------HHH---HHHHHHHHHHHHCCC
Confidence 88877654433221111122221111 3499999999986432 111 223333333323344
Q ss_pred EEEEEeeCCccc---ccHHhhCCCCcc--ceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHH
Q 007661 368 VLLIGMTNRKDM---LDEALLRPGRLE--VQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAEL 442 (594)
Q Consensus 368 v~vI~~tn~~~~---ld~al~r~gRf~--~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl 442 (594)
.+||++...|+. +++.+++ ||. ..+++++||.++|.+||+..++.... ..++..++.||+...+ +.++|
T Consensus 234 ~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~---~l~~e~l~~ia~~~~~-~~r~l 307 (405)
T TIGR00362 234 QIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGL---ELPDEVLEFIAKNIRS-NVREL 307 (405)
T ss_pred CEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhcCC-CHHHH
Confidence 566666655654 5688887 664 58999999999999999998876431 2355568889988865 78999
Q ss_pred HHHHHHHHHHHH
Q 007661 443 EGVAKSAVSFAL 454 (594)
Q Consensus 443 ~~l~~~A~~~a~ 454 (594)
++++.....++.
T Consensus 308 ~~~l~~l~~~a~ 319 (405)
T TIGR00362 308 EGALNRLLAYAS 319 (405)
T ss_pred HHHHHHHHHHHH
Confidence 988887766654
No 67
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.59 E-value=4.1e-14 Score=153.67 Aligned_cols=206 Identities=20% Similarity=0.341 Sum_probs=131.9
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC----CCCcEEEe
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN----GMEPKIVN 287 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~----~~~~~~v~ 287 (594)
+.++|++.-+|.-........++.... | | ....+++||||||||||+|++++++++. +..+++++
T Consensus 117 ~~~tfd~fv~g~~n~~a~~~~~~~~~~----~------~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 117 PKYTFDNFVVGKSNRLAHAAALAVAEN----P------G-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCcccccccCCCcHHHHHHHHHHHhC----c------C-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 788999864443333222221222211 1 1 2235699999999999999999999873 33467888
Q ss_pred cchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCc
Q 007661 288 GPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNN 367 (594)
Q Consensus 288 ~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~ 367 (594)
+.++...+..........-|..... .+++|+|||++.+..+.. ....|+..++.+...+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~dlLiiDDi~~l~~~~~-----------~~~~l~~~~n~l~~~~~ 245 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKYR---------SVDVLLIDDIQFLAGKER-----------TQEEFFHTFNALHEAGK 245 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHh---------cCCEEEEehhhhhcCCHH-----------HHHHHHHHHHHHHHCCC
Confidence 8888766544432222222322222 145999999999863321 11233333333333345
Q ss_pred EEEEEeeCCccc---ccHHhhCCCCcc--ceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHH
Q 007661 368 VLLIGMTNRKDM---LDEALLRPGRLE--VQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAEL 442 (594)
Q Consensus 368 v~vI~~tn~~~~---ld~al~r~gRf~--~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl 442 (594)
.++|++...|.. +++++++ ||. ..+++..|+.++|.+||+..++... ...++..++.||..+.| +.++|
T Consensus 246 ~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~---~~l~~e~l~~ia~~~~~-~~R~l 319 (450)
T PRK00149 246 QIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEG---IDLPDEVLEFIAKNITS-NVREL 319 (450)
T ss_pred cEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHcCcCC-CHHHH
Confidence 566666666655 6789988 664 6899999999999999999887532 12345568889988875 78899
Q ss_pred HHHHHHHHHHHH
Q 007661 443 EGVAKSAVSFAL 454 (594)
Q Consensus 443 ~~l~~~A~~~a~ 454 (594)
++++.....++.
T Consensus 320 ~~~l~~l~~~~~ 331 (450)
T PRK00149 320 EGALNRLIAYAS 331 (450)
T ss_pred HHHHHHHHHHHH
Confidence 888887766554
No 68
>PF02359 CDC48_N: Cell division protein 48 (CDC48), N-terminal domain; InterPro: IPR003338 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The VAT protein of the archaebacterium Thermoplasma acidophilum, like all other members of the Cdc48/p97 family of AAA ATPases, has two ATPase domains and a 185-residue amino-terminal substrate-recognition domain, VAT-N. VAT shows activity in protein folding and unfolding and thus shares the common function of these ATPases in disassembly and/or degradation of protein complexes. VAT-N is composed of two equally sized subdomains. The amino-terminal subdomain VAT-Nn forms a double-psi beta-barrel whose pseudo-twofold symmetry is mirrored by an internal sequence repeat of 42 residues. The carboxy-terminal subdomain VAT-Nc forms a novel six-stranded beta-clam fold []. Together, VAT-Nn and VAT-Nc form a kidney-shaped structure, in close agreement with results from electron microscopy. VAT-Nn is related to numerous proteins including prokaryotic transcription factors, metabolic enzymes, the protease cofactors UFD1 and PrlF, and aspartic proteinases. ; GO: 0005524 ATP binding; PDB: 1CZ4_A 1CZ5_A 3CF3_C 3CF1_A 3CF2_A 1S3S_D 1E32_A 1R7R_A 2PJH_B 1CR5_B ....
Probab=99.58 E-value=6.2e-15 Score=122.25 Aligned_cols=82 Identities=30% Similarity=0.417 Sum_probs=66.5
Q ss_pred eEEEeecCCcccccccEEEeChhhhcccCCCCCCceEEEEeCCc----EEEEEeeCCCCCCCceeeCHhhhhccCccCCC
Q 007661 14 TMNVINTPSADLALTNLAYCSPADLLNFRVPNSNLFLASVAGDS----FVLSLASHPSVNKGQIALNSVQRRHAKVSTGD 89 (594)
Q Consensus 14 ~l~v~~~p~~~~~~tn~a~vsp~~~~~l~~~g~~~~~v~v~g~~----~v~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~ 89 (594)
+|+|+++|+++++++||||+||++|++|++. .++++++.|++ +||...+++. ++|.|+||..+|+|+++++||
T Consensus 1 ~L~V~~~p~~~~~~~n~v~v~~~~m~~l~l~--~gd~v~i~g~~~tv~~v~~~~~~~~-~~g~I~l~~~~R~n~~v~igd 77 (87)
T PF02359_consen 1 RLRVAEAPSDEDAGTNCVRVSPEDMEELGLF--PGDVVLISGKRKTVAFVFPDRPDDS-PPGVIRLSGIQRKNAGVSIGD 77 (87)
T ss_dssp EEEEEE-SSSHHHCTTEEEEEHHHHHCTTT---TTEEEEEETTTEEEEEEEEECCSTT-CTTEEEE-HHHHHHCT--TTS
T ss_pred CcEEEeCCChHhCCCCEEEEcHHHHHHcCCC--CccEEEEeCCceEEEEEEECCCCCC-CCCEEEECHHHHhhCCcCCCC
Confidence 5899999999999999999999999999994 24999998765 4444444444 799999999999999999999
Q ss_pred eEEEEEeCC
Q 007661 90 HVSLNRFIP 98 (594)
Q Consensus 90 ~v~v~~~~~ 98 (594)
.|+|+|+.+
T Consensus 78 ~V~V~~~~~ 86 (87)
T PF02359_consen 78 RVTVRPYDP 86 (87)
T ss_dssp EEEEEEETT
T ss_pred EEEEEECCC
Confidence 999999974
No 69
>PRK06893 DNA replication initiation factor; Validated
Probab=99.57 E-value=1.4e-13 Score=135.95 Aligned_cols=162 Identities=11% Similarity=0.116 Sum_probs=105.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchh
Q 007661 256 GMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDA 333 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~ 333 (594)
.++||||||||||+|++++|+++ ++....+++..+.. ....++++... ..++|+|||++.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~~----------~~dlLilDDi~~ 102 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENLE----------QQDLVCLDDLQA 102 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhcc----------cCCEEEEeChhh
Confidence 58999999999999999999986 23344455543211 11112232222 134999999999
Q ss_pred hhccCCCCCCCCchHHHHHHHHHHhhcCccccCc-EEEEEeeCCccccc---HHhhCCCCccceeecCCCCHHHHHHHHH
Q 007661 334 ICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNN-VLLIGMTNRKDMLD---EALLRPGRLEVQVEISLPDENGRLQILQ 409 (594)
Q Consensus 334 l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~-v~vI~~tn~~~~ld---~al~r~gRf~~~i~i~~P~~~~r~~IL~ 409 (594)
+.+.. ..... |+..++.....++ +++++++..|..++ +.|+++.++...++++.|+.++|.+||+
T Consensus 103 ~~~~~--------~~~~~---l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 103 VIGNE--------EWELA---IFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred hcCCh--------HHHHH---HHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 86321 11222 3333333333333 45566666676654 8899866777899999999999999999
Q ss_pred HHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 007661 410 IHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAV 450 (594)
Q Consensus 410 ~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~ 450 (594)
.++.... ...++..+..|+.+..| +.+.+.+++....
T Consensus 172 ~~a~~~~---l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~ 208 (229)
T PRK06893 172 RNAYQRG---IELSDEVANFLLKRLDR-DMHTLFDALDLLD 208 (229)
T ss_pred HHHHHcC---CCCCHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 8775432 12455568889998875 6777777776543
No 70
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.57 E-value=2.6e-13 Score=145.36 Aligned_cols=232 Identities=16% Similarity=0.187 Sum_probs=149.6
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC----CCCcEEEe
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN----GMEPKIVN 287 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~----~~~~~~v~ 287 (594)
+++..+. +.|-+++++++ ...+...+. -..+.+++++||||||||++++.+++++. ...+++++
T Consensus 25 ~~~~P~~--l~~Re~e~~~l-~~~l~~~~~---------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in 92 (394)
T PRK00411 25 PDYVPEN--LPHREEQIEEL-AFALRPALR---------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN 92 (394)
T ss_pred CCCcCCC--CCCHHHHHHHH-HHHHHHHhC---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 4555555 89999999998 555432221 13445799999999999999999998873 23466788
Q ss_pred cchhhh----------cccc--------hhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHH
Q 007661 288 GPEVLS----------KFVG--------ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHD 349 (594)
Q Consensus 288 ~~~l~~----------~~~g--------~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~ 349 (594)
|....+ ...+ .....+..+.+..... ..+.||+|||+|.+.... ..
T Consensus 93 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~viviDE~d~l~~~~---------~~ 156 (394)
T PRK00411 93 CQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDER-------DRVLIVALDDINYLFEKE---------GN 156 (394)
T ss_pred CCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhc-------CCEEEEEECCHhHhhccC---------Cc
Confidence 764322 1111 0111222222222211 235799999999997211 12
Q ss_pred HHHHHHHHhhcCccccCcEEEEEeeCCcc---cccHHhhCCCCc-cceeecCCCCHHHHHHHHHHHHhccccCCCCCCcc
Q 007661 350 SIVNQLLTKIDGVESLNNVLLIGMTNRKD---MLDEALLRPGRL-EVQVEISLPDENGRLQILQIHTNKMKENSFLAPDV 425 (594)
Q Consensus 350 ~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~---~ld~al~r~gRf-~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~ 425 (594)
..+..|+..++.... .++.+|+++|..+ .+++.+.+ || ...|.+++++.++..+||+.+++.-.... ..++.
T Consensus 157 ~~l~~l~~~~~~~~~-~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~-~~~~~ 232 (394)
T PRK00411 157 DVLYSLLRAHEEYPG-ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPG-VVDDE 232 (394)
T ss_pred hHHHHHHHhhhccCC-CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccC-CCCHh
Confidence 356666666554432 3788999988764 46787776 44 35789999999999999998875421111 23444
Q ss_pred cHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhccc
Q 007661 426 NLQELAARTKNYS--GAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVP 488 (594)
Q Consensus 426 ~l~~la~~t~g~s--g~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~p 488 (594)
.++.+++.+.+.+ .+.+-.+|+.|...|..+. ...|+.+|+..|+.++.+
T Consensus 233 ~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~-------------~~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 233 VLDLIADLTAREHGDARVAIDLLRRAGLIAEREG-------------SRKVTEEDVRKAYEKSEI 284 (394)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC-------------CCCcCHHHHHHHHHHHHH
Confidence 5777777774432 3555577888887776542 346899999999988743
No 71
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.56 E-value=1.3e-13 Score=152.25 Aligned_cols=225 Identities=18% Similarity=0.235 Sum_probs=143.0
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC---------CCC
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---------GME 282 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~---------~~~ 282 (594)
+++..+. |.|.++|+++| ...+...+. |-.+...++++|+||||||++++.+++++. ...
T Consensus 750 ~DYVPD~--LPhREeEIeeL-asfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~ 818 (1164)
T PTZ00112 750 LDVVPKY--LPCREKEIKEV-HGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFN 818 (1164)
T ss_pred cccCCCc--CCChHHHHHHH-HHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCce
Confidence 4444455 99999999999 555543332 222333456999999999999999988772 134
Q ss_pred cEEEecchhhhcc---------c-------c-hhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCC
Q 007661 283 PKIVNGPEVLSKF---------V-------G-ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGT 345 (594)
Q Consensus 283 ~~~v~~~~l~~~~---------~-------g-~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~ 345 (594)
+++|||..+...+ + | .....+..+|....... ....||+|||||.|..+
T Consensus 819 vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~------r~v~IIILDEID~L~kK-------- 884 (1164)
T PTZ00112 819 VFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDN------RNVSILIIDEIDYLITK-------- 884 (1164)
T ss_pred EEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhccc------ccceEEEeehHhhhCcc--------
Confidence 5678885433211 0 1 12234555555442211 12569999999999743
Q ss_pred chHHHHHHHHHHhhcCccccCcEEEEEeeCC---cccccHHhhCCCCccc-eeecCCCCHHHHHHHHHHHHhccccCCCC
Q 007661 346 GVHDSIVNQLLTKIDGVESLNNVLLIGMTNR---KDMLDEALLRPGRLEV-QVEISLPDENGRLQILQIHTNKMKENSFL 421 (594)
Q Consensus 346 ~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~---~~~ld~al~r~gRf~~-~i~i~~P~~~~r~~IL~~~~~~~~~~~~l 421 (594)
.+.++..|..... ....++.|||++|. ++.+++.+++ ||.. +|.|++++.+++.+||+.++.... . .
T Consensus 885 --~QDVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~--g-V 955 (1164)
T PTZ00112 885 --TQKVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCK--E-I 955 (1164)
T ss_pred --HHHHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCC--C-C
Confidence 2345555555433 23357999999987 4557888887 4432 588999999999999998887542 1 3
Q ss_pred CCcccHHHHHHHcCCCCH--HHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhc
Q 007661 422 APDVNLQELAARTKNYSG--AELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (594)
Q Consensus 422 ~~~~~l~~la~~t~g~sg--~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~ 486 (594)
.++..++.+|+.+...+| |..-.+|+.|+..+ +...|+.+|+.+|+.++
T Consensus 956 LdDdAIELIArkVAq~SGDARKALDILRrAgEik----------------egskVT~eHVrkAleei 1006 (1164)
T PTZ00112 956 IDHTAIQLCARKVANVSGDIRKALQICRKAFENK----------------RGQKIVPRDITEATNQL 1006 (1164)
T ss_pred CCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhc----------------CCCccCHHHHHHHHHHH
Confidence 445557777775554333 33334555555321 11267888888888765
No 72
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=4.4e-13 Score=144.86 Aligned_cols=192 Identities=17% Similarity=0.184 Sum_probs=130.0
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCC----------
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME---------- 282 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~---------- 282 (594)
+-+|++ |.|.+...+.+ +.++... +.+.++||||||||||||+|+++|+.+++..
T Consensus 10 P~~~~d--ivGq~~i~~~L-~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 10 PKTFSE--VVGQDHVKKLI-INALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred CCCHHH--ccCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 457888 99998876665 6655432 2345689999999999999999999986421
Q ss_pred -------------cEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHH
Q 007661 283 -------------PKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHD 349 (594)
Q Consensus 283 -------------~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~ 349 (594)
+..+++. .......++++.+.+.. .|.. +...||||||+|.+. .
T Consensus 75 ~~c~~i~~g~~~dv~el~aa------~~~gid~iR~i~~~~~~-~p~~---~~~kVvIIDE~h~Lt-------------~ 131 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAA------SNRGIDEIRKIRDAVGY-RPME---GKYKVYIIDEVHMLT-------------K 131 (472)
T ss_pred HHHHHHhcCCCCccEEEeCc------ccCCHHHHHHHHHHHhh-Chhc---CCeEEEEEEChHHhH-------------H
Confidence 1122211 01123456666665543 2222 235699999999984 2
Q ss_pred HHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHH
Q 007661 350 SIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQE 429 (594)
Q Consensus 350 ~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~ 429 (594)
..++.|+..++. ..+.+++|++|+.++.+++++++ |+. .+++..|+.++...+++..++.... ..++..+..
T Consensus 132 ~a~~~LLk~LE~--p~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi---~i~~eal~~ 203 (472)
T PRK14962 132 EAFNALLKTLEE--PPSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGI---EIDREALSF 203 (472)
T ss_pred HHHHHHHHHHHh--CCCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCC---CCCHHHHHH
Confidence 234567777664 23468888888888899999998 553 7999999999999999887764321 234556888
Q ss_pred HHHHcCCCCHHHHHHHHHHHHH
Q 007661 430 LAARTKNYSGAELEGVAKSAVS 451 (594)
Q Consensus 430 la~~t~g~sg~dl~~l~~~A~~ 451 (594)
|+..+.| ..+++.+.+..+..
T Consensus 204 Ia~~s~G-dlR~aln~Le~l~~ 224 (472)
T PRK14962 204 IAKRASG-GLRDALTMLEQVWK 224 (472)
T ss_pred HHHHhCC-CHHHHHHHHHHHHH
Confidence 8888765 56666666655443
No 73
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.55 E-value=2.8e-13 Score=133.57 Aligned_cols=197 Identities=16% Similarity=0.175 Sum_probs=123.1
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecc
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGP 289 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~ 289 (594)
...+|++...++.+..++.+ ++... ...+.+++|+||||||||++|+++++.+. +..++++++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l-~~~~~-------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAAL-RQLAA-------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA 75 (226)
T ss_pred CchhhcCcCcCCcHHHHHHH-HHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence 45678775335566666666 54432 13456899999999999999999998873 3467778887
Q ss_pred hhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEE
Q 007661 290 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVL 369 (594)
Q Consensus 290 ~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~ 369 (594)
++.... ..+++.... ..+|+|||+|.+.... . ....|...++.....+..+
T Consensus 76 ~~~~~~--------~~~~~~~~~----------~~lLvIDdi~~l~~~~--------~---~~~~L~~~l~~~~~~~~~i 126 (226)
T TIGR03420 76 ELAQAD--------PEVLEGLEQ----------ADLVCLDDVEAIAGQP--------E---WQEALFHLYNRVREAGGRL 126 (226)
T ss_pred HHHHhH--------HHHHhhccc----------CCEEEEeChhhhcCCh--------H---HHHHHHHHHHHHHHcCCeE
Confidence 775432 223322211 2399999999875211 0 1122333333222223344
Q ss_pred EEEeeCCccccc---HHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHH
Q 007661 370 LIGMTNRKDMLD---EALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVA 446 (594)
Q Consensus 370 vI~~tn~~~~ld---~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~ 446 (594)
|+.++..+..++ +.+.++..+...+++++|+.+++..+++.+..+.. ...++..+..|+.. .+-+.+++.+++
T Consensus 127 Iits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~---~~~~~~~l~~L~~~-~~gn~r~L~~~l 202 (226)
T TIGR03420 127 LIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRG---LQLPDEVADYLLRH-GSRDMGSLMALL 202 (226)
T ss_pred EEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHh-ccCCHHHHHHHH
Confidence 444444444332 67776222357899999999999999987765432 12344457888886 455899999999
Q ss_pred HHHHHHHHH
Q 007661 447 KSAVSFALN 455 (594)
Q Consensus 447 ~~A~~~a~~ 455 (594)
+.+...+..
T Consensus 203 ~~~~~~~~~ 211 (226)
T TIGR03420 203 DALDRASLA 211 (226)
T ss_pred HHHHHHHHH
Confidence 887765544
No 74
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.54 E-value=2.6e-13 Score=146.25 Aligned_cols=176 Identities=16% Similarity=0.324 Sum_probs=115.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhhC----CCCcEEEecchhhhcccchhHH-HHHHHHHHHHhhccccCCCCCcEEEEEc
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKMLN----GMEPKIVNGPEVLSKFVGETEK-NIRDLFADAENDQRTRGDQSDLHVIIFD 329 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l~----~~~~~~v~~~~l~~~~~g~~~~-~i~~lf~~a~~~~~~~~~~~~~~Il~iD 329 (594)
.+++||||||||||+|++++++++. +..+.++++.+++..+...... .+.+ |...... .+++|+||
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~--------~~dvLlID 201 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRK--------KVDVLLID 201 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHh--------cCCEEEEe
Confidence 4699999999999999999999873 2356788888877655432211 1222 2222221 24599999
Q ss_pred cchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCccc---ccHHhhCCCCccceeecCCCCHHHHHH
Q 007661 330 EIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDM---LDEALLRPGRLEVQVEISLPDENGRLQ 406 (594)
Q Consensus 330 Eid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~---ld~al~r~gRf~~~i~i~~P~~~~r~~ 406 (594)
|++.+..+.. ... .|+..++.+...+..+||++.+.|.. +++.++++......+++.+||.+.|..
T Consensus 202 Di~~l~~~~~-------~q~----elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 202 DVQFLIGKTG-------VQT----ELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred chhhhcCcHH-------HHH----HHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 9999863311 112 23333333333345566666566655 567788744446788999999999999
Q ss_pred HHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 007661 407 ILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFAL 454 (594)
Q Consensus 407 IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~ 454 (594)
||+..++... . ..++..+..||+...+ +.++|++++.....++.
T Consensus 271 IL~~~~~~~~--~-~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~ 314 (440)
T PRK14088 271 IARKMLEIEH--G-ELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKE 314 (440)
T ss_pred HHHHHHHhcC--C-CCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHH
Confidence 9998876432 1 2345568888888875 78899888877655443
No 75
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.54 E-value=2.6e-13 Score=148.21 Aligned_cols=207 Identities=18% Similarity=0.314 Sum_probs=131.8
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC----CCCcEEEe
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN----GMEPKIVN 287 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~----~~~~~~v~ 287 (594)
+.++|++.-+|.-..........+... .+ .....++|||++|||||+|++++++++. +..+++++
T Consensus 283 ~~~TFDnFvvG~sN~~A~aaa~avae~----------~~-~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 283 PKYTFDTFVIGASNRFAHAAAVAVAEA----------PA-KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred CCCCHhhhcCCCccHHHHHHHHHHHhC----------cc-ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 788999975555443222121222211 11 1223599999999999999999999873 34678899
Q ss_pred cchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCc
Q 007661 288 GPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNN 367 (594)
Q Consensus 288 ~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~ 367 (594)
+.+++..+.........+.|...... +++|+||||+.+..+. ..... |+..++.+...++
T Consensus 352 aeef~~el~~al~~~~~~~f~~~y~~---------~DLLlIDDIq~l~gke--------~tqee---LF~l~N~l~e~gk 411 (617)
T PRK14086 352 SEEFTNEFINSIRDGKGDSFRRRYRE---------MDILLVDDIQFLEDKE--------STQEE---FFHTFNTLHNANK 411 (617)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhhc---------CCEEEEehhccccCCH--------HHHHH---HHHHHHHHHhcCC
Confidence 98888776554333333334433221 4599999999986432 11222 2222222223234
Q ss_pred EEEEEeeCC-cc---cccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHH
Q 007661 368 VLLIGMTNR-KD---MLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELE 443 (594)
Q Consensus 368 v~vI~~tn~-~~---~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~ 443 (594)
-+|| ++|. |. .+++.|+++......++|..||.+.|.+||+.+++... ...++.-++.|+.+..+ +.++|+
T Consensus 412 ~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~---l~l~~eVi~yLa~r~~r-nvR~Le 486 (617)
T PRK14086 412 QIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQ---LNAPPEVLEFIASRISR-NIRELE 486 (617)
T ss_pred CEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHhccC-CHHHHH
Confidence 3444 5554 33 47899999555577889999999999999998876543 12345568888888764 788998
Q ss_pred HHHHHHHHHHH
Q 007661 444 GVAKSAVSFAL 454 (594)
Q Consensus 444 ~l~~~A~~~a~ 454 (594)
.++.....++.
T Consensus 487 gaL~rL~a~a~ 497 (617)
T PRK14086 487 GALIRVTAFAS 497 (617)
T ss_pred HHHHHHHHHHH
Confidence 88887665554
No 76
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=4.7e-15 Score=144.10 Aligned_cols=101 Identities=20% Similarity=0.292 Sum_probs=89.4
Q ss_pred CCCcCCccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecc
Q 007661 489 AFGASTDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISA 568 (594)
Q Consensus 489 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~ 568 (594)
+.-...+.+.|.+..|+...++.+++.+..+..+++.| ..+++|-+||||||||||||+.||||+|+|++-.|++|.++
T Consensus 122 AIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlF-tGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSS 200 (439)
T KOG0739|consen 122 AIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLF-TGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 200 (439)
T ss_pred hhhccCCCCchhhhccchhHHHHHHhheeecccchhhh-cCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehH
Confidence 44456778999999999999999998888888877665 55778999999999999999999999999999999999999
Q ss_pred ccc---cccccchhhhHHHHHHHhhhcCC
Q 007661 569 ESM---IGLHESTKCAQIVKVSECQFSGS 594 (594)
Q Consensus 569 e~~---vG~sE~~~~~~ir~~F~~A~~~~ 594 (594)
+++ .||||+= ++.+|+.||..+
T Consensus 201 DLvSKWmGESEkL----VknLFemARe~k 225 (439)
T KOG0739|consen 201 DLVSKWMGESEKL----VKNLFEMARENK 225 (439)
T ss_pred HHHHHHhccHHHH----HHHHHHHHHhcC
Confidence 995 9999986 999999999753
No 77
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=3.9e-13 Score=143.15 Aligned_cols=198 Identities=19% Similarity=0.213 Sum_probs=135.9
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEE-------
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI------- 285 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~------- 285 (594)
.-+|++ +.|.+..++.| +.++... +.+..+||+||||||||++|+.+|+.+++.....
T Consensus 14 P~~f~d--vVGQe~iv~~L-~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 14 PQFFRD--VIHQDLAIGAL-QNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred CCCHHH--HhChHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 457888 99999988877 6665432 2234689999999999999999999987532100
Q ss_pred Eecchhhhc----------ccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHH
Q 007661 286 VNGPEVLSK----------FVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (594)
Q Consensus 286 v~~~~l~~~----------~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~L 355 (594)
-+|.++... ........+|++.+.+... +..+ ...|+||||+|.+- ....+.|
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~-p~~g---~~KV~IIDEah~Ls-------------~~A~NAL 141 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFA-PMGG---KYKVYIIDEVHMLT-------------DQSFNAL 141 (484)
T ss_pred cHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhh-hhcC---CCEEEEEechhhcC-------------HHHHHHH
Confidence 011111110 0111234566666655432 2212 24599999999984 3356777
Q ss_pred HHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcC
Q 007661 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (594)
Q Consensus 356 l~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~ 435 (594)
|..|+. ...++++|++|+.++.|.+.+++ |.. .+.|..++.++..+.|+..++... ...++..+..|++.+.
T Consensus 142 LKtLEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Eg---i~~e~eAL~~Ia~~S~ 213 (484)
T PRK14956 142 LKTLEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIEN---VQYDQEGLFWIAKKGD 213 (484)
T ss_pred HHHhhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcC
Confidence 777764 44689999999999999999998 542 688999999988888888876533 1235556888898888
Q ss_pred CCCHHHHHHHHHHHHH
Q 007661 436 NYSGAELEGVAKSAVS 451 (594)
Q Consensus 436 g~sg~dl~~l~~~A~~ 451 (594)
| +.++.-+++..+..
T Consensus 214 G-d~RdAL~lLeq~i~ 228 (484)
T PRK14956 214 G-SVRDMLSFMEQAIV 228 (484)
T ss_pred C-hHHHHHHHHHHHHH
Confidence 7 67888777776654
No 78
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=4.1e-15 Score=149.51 Aligned_cols=95 Identities=18% Similarity=0.206 Sum_probs=85.5
Q ss_pred CccccccccCcceeccchhhHHHHHHHHHHHHHHhc-CCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc-
Q 007661 494 TDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVS-KGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM- 571 (594)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~- 571 (594)
.-.+.|.+++|+..+...+++.+..+++.++.|... -.+|++|||||||||||||+||||+|+++|.+||.|.++.+.
T Consensus 86 ~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~ 165 (386)
T KOG0737|consen 86 EIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS 165 (386)
T ss_pred hceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch
Confidence 346778889999999999999999999999999544 358999999999999999999999999999999999999884
Q ss_pred --cccccchhhhHHHHHHHhhhc
Q 007661 572 --IGLHESTKCAQIVKVSECQFS 592 (594)
Q Consensus 572 --vG~sE~~~~~~ir~~F~~A~~ 592 (594)
.||+|+. ++-+|.-|+|
T Consensus 166 KWfgE~eKl----v~AvFslAsK 184 (386)
T KOG0737|consen 166 KWFGEAQKL----VKAVFSLASK 184 (386)
T ss_pred hhHHHHHHH----HHHHHhhhhh
Confidence 8999986 9999999986
No 79
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.2e-14 Score=146.12 Aligned_cols=108 Identities=19% Similarity=0.241 Sum_probs=91.8
Q ss_pred hHHHHHHHhcccCCCcCCccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHh
Q 007661 477 DDFLHALYEIVPAFGASTDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGI 556 (594)
Q Consensus 477 ~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~ 556 (594)
.++.++++.-.- ...+.+.|.++-|+.+.+..+++.+..++..++-| +...+|=+|||++||||||||+||||+|+
T Consensus 192 ~~Lve~lerdIl---~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F-~GirrPWkgvLm~GPPGTGKTlLAKAvAT 267 (491)
T KOG0738|consen 192 ADLVEALERDIL---QRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFF-KGIRRPWKGVLMVGPPGTGKTLLAKAVAT 267 (491)
T ss_pred HHHHHHHHHHHh---ccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHH-hhcccccceeeeeCCCCCcHHHHHHHHHH
Confidence 356666664322 23456889999999999999999999998888776 44678999999999999999999999999
Q ss_pred hcCCCEEEEecccc---ccccccchhhhHHHHHHHhhhc
Q 007661 557 DSDFPFVKIISAES---MIGLHESTKCAQIVKVSECQFS 592 (594)
Q Consensus 557 ~~~~~fi~v~~~e~---~vG~sE~~~~~~ir~~F~~A~~ 592 (594)
||+-.|+.|.++.+ |=||||+= ||=+|+.||.
T Consensus 268 Ec~tTFFNVSsstltSKwRGeSEKl----vRlLFemARf 302 (491)
T KOG0738|consen 268 ECGTTFFNVSSSTLTSKWRGESEKL----VRLLFEMARF 302 (491)
T ss_pred hhcCeEEEechhhhhhhhccchHHH----HHHHHHHHHH
Confidence 99999999999988 69999985 9999999985
No 80
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.52 E-value=2.6e-13 Score=149.50 Aligned_cols=222 Identities=18% Similarity=0.225 Sum_probs=137.6
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC---------CCCc
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---------GMEP 283 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~---------~~~~ 283 (594)
..+|++ +.|.+..++.+ +.+... ..+.++||+||||||||++||++++... ..++
T Consensus 61 p~~f~~--iiGqs~~i~~l-~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~f 124 (531)
T TIGR02902 61 PKSFDE--IIGQEEGIKAL-KAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAF 124 (531)
T ss_pred cCCHHH--eeCcHHHHHHH-HHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCE
Confidence 356888 89999988887 444321 2346899999999999999999987531 2356
Q ss_pred EEEecchhh--h-----cccchhHHHH---HHHHHHHHhhccc--cCCCCCcEEEEEccchhhhccCCCCCCCCchHHHH
Q 007661 284 KIVNGPEVL--S-----KFVGETEKNI---RDLFADAENDQRT--RGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSI 351 (594)
Q Consensus 284 ~~v~~~~l~--~-----~~~g~~~~~i---~~lf~~a~~~~~~--~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~ 351 (594)
+.++|.... . ...+.....+ ...|..+....+. .-......+|||||++.+.+ ..
T Consensus 125 i~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~-------------~~ 191 (531)
T TIGR02902 125 VEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHP-------------VQ 191 (531)
T ss_pred EEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCH-------------HH
Confidence 777775311 1 0011000000 0000000000000 00011124999999999853 23
Q ss_pred HHHHHHhhcCc--------------------------cccCcEEEEEe-eCCcccccHHhhCCCCccceeecCCCCHHHH
Q 007661 352 VNQLLTKIDGV--------------------------ESLNNVLLIGM-TNRKDMLDEALLRPGRLEVQVEISLPDENGR 404 (594)
Q Consensus 352 v~~Ll~~ld~~--------------------------~~~~~v~vI~~-tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r 404 (594)
.+.|+..|+.- .-..++.+|++ |+.|+.|++++++ |+. .+.+++++.+++
T Consensus 192 q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei 268 (531)
T TIGR02902 192 MNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEI 268 (531)
T ss_pred HHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHH
Confidence 34444443210 01124555555 5678999999998 764 788999999999
Q ss_pred HHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHH
Q 007661 405 LQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALY 484 (594)
Q Consensus 405 ~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~ 484 (594)
.+|++..+++... ..++..++.++..+. +++++.++++.|+..|..+ ....|+.+|+..++.
T Consensus 269 ~~Il~~~a~k~~i---~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~-------------~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 269 KEIAKNAAEKIGI---NLEKHALELIVKYAS--NGREAVNIVQLAAGIALGE-------------GRKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHHHHHHcCC---CcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhC-------------CCcEEcHHHHHHHhC
Confidence 9999998877542 224445667776554 7999999999999877653 124688899998886
No 81
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=6.8e-13 Score=146.25 Aligned_cols=200 Identities=17% Similarity=0.192 Sum_probs=136.1
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEE-E-----
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI-V----- 286 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~-v----- 286 (594)
.-+|++ |.|.+..++.| +.++..- +.+..+||+||+|||||++++.+++.+++..... .
T Consensus 12 PqtFdE--VIGQe~Vv~~L-~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 12 PKDFAS--LVGQEHVVRAL-THALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred CCcHHH--HcCcHHHHHHH-HHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 357888 99999988877 6655421 2234679999999999999999999986531100 0
Q ss_pred -ecchhhh----------cccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHH
Q 007661 287 -NGPEVLS----------KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (594)
Q Consensus 287 -~~~~l~~----------~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~L 355 (594)
+|..+.. .........++++++.+... +..+ ...|+||||+|.|- ....+.|
T Consensus 77 ~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~-P~~g---r~KVIIIDEah~LT-------------~~A~NAL 139 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYA-PVDA---RFKVYMIDEVHMLT-------------NHAFNAM 139 (830)
T ss_pred HHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhc-cccC---CceEEEEeChhhCC-------------HHHHHHH
Confidence 1111110 00112234567777665432 2222 24599999999984 2345667
Q ss_pred HHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcC
Q 007661 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (594)
Q Consensus 356 l~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~ 435 (594)
|..|+. ...++.+|.+||.++.|.+.+++ |+ ..+.|..++.++..+.|+..+++... ..++..+..|++.+.
T Consensus 140 LKtLEE--PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI---~id~eAL~lIA~~A~ 211 (830)
T PRK07003 140 LKTLEE--PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERI---AFEPQALRLLARAAQ 211 (830)
T ss_pred HHHHHh--cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcC
Confidence 777664 34588999999999999999998 54 37999999999999999888765331 234556788888888
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 007661 436 NYSGAELEGVAKSAVSFA 453 (594)
Q Consensus 436 g~sg~dl~~l~~~A~~~a 453 (594)
| +.++..+++..+..+.
T Consensus 212 G-smRdALsLLdQAia~~ 228 (830)
T PRK07003 212 G-SMRDALSLTDQAIAYS 228 (830)
T ss_pred C-CHHHHHHHHHHHHHhc
Confidence 7 6788878877766543
No 82
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.1e-13 Score=146.47 Aligned_cols=163 Identities=26% Similarity=0.339 Sum_probs=123.2
Q ss_pred CccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEec------chhhh
Q 007661 220 GIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNG------PEVLS 293 (594)
Q Consensus 220 ~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~------~~l~~ 293 (594)
+--||++++++|+ +.++-... .|-...+-++|+||||+|||+++|.||+.++.. ++.++. +++-+
T Consensus 412 DHYgm~dVKeRIL-EfiAV~kL-------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk-FfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 412 DHYGMEDVKERIL-EFIAVGKL-------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRK-FFRFSVGGMTDVAEIKG 482 (906)
T ss_pred cccchHHHHHHHH-HHHHHHhh-------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc-eEEEeccccccHHhhcc
Confidence 4789999999994 55543322 234556678999999999999999999999644 444332 33332
Q ss_pred ---cccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCc--------
Q 007661 294 ---KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV-------- 362 (594)
Q Consensus 294 ---~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~-------- 362 (594)
.|+|....++-+.++...-..| +++|||+|.+.. +-+.+ --..||+.+|.-
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~NP---------liLiDEvDKlG~--g~qGD-------PasALLElLDPEQNanFlDH 544 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTENP---------LILIDEVDKLGS--GHQGD-------PASALLELLDPEQNANFLDH 544 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCCc---------eEEeehhhhhCC--CCCCC-------hHHHHHHhcChhhccchhhh
Confidence 7999999999988888888766 999999999972 22211 123455555532
Q ss_pred -----cccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHH
Q 007661 363 -----ESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHT 412 (594)
Q Consensus 363 -----~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~ 412 (594)
-...+|++|+|+|..+.|+++|+. |++ .|+++-+..++..+|-+.|+
T Consensus 545 YLdVp~DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 545 YLDVPVDLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred ccccccchhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhh
Confidence 234579999999999999999998 887 69999999999999999886
No 83
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.51 E-value=5.1e-13 Score=143.65 Aligned_cols=206 Identities=12% Similarity=0.145 Sum_probs=124.0
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecc
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGP 289 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~ 289 (594)
|+++|++.-+|.-........++....+-.. +-.+..+++||||||+|||+|++++++++. +..+.+++..
T Consensus 106 ~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~-------~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 106 PLMTFANFLVTPENDLPHRILQEFTKVSEQG-------KGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred ccccccceeeCCcHHHHHHHHHHHHhccccc-------cCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 7889999744443332212223322111100 012335799999999999999999999873 4567778877
Q ss_pred hhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEE
Q 007661 290 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVL 369 (594)
Q Consensus 290 ~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~ 369 (594)
++...+.......-.+.|..... ..++|+|||++.+.++.. ....+-.+++. +...+..+
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~~~---------~~dvLiIDDiq~l~~k~~--------~qeelf~l~N~---l~~~~k~I 238 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQFYR---------NVDALFIEDIEVFSGKGA--------TQEEFFHTFNS---LHTEGKLI 238 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHHcc---------cCCEEEEcchhhhcCChh--------hHHHHHHHHHH---HHHCCCcE
Confidence 76654332221111122333222 245999999999864321 11222222221 11223455
Q ss_pred EEEeeCCcc---cccHHhhCCCCc--cceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHH
Q 007661 370 LIGMTNRKD---MLDEALLRPGRL--EVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEG 444 (594)
Q Consensus 370 vI~~tn~~~---~ld~al~r~gRf--~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~ 444 (594)
|+++...|. .++++|++ || ...+.+.+|+.++|..||+..++... ...++..++.|+....+ +.++|++
T Consensus 239 Ilts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~---~~l~~evl~~la~~~~~-dir~L~g 312 (445)
T PRK12422 239 VISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALS---IRIEETALDFLIEALSS-NVKSLLH 312 (445)
T ss_pred EEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhcCC-CHHHHHH
Confidence 555555554 36789988 66 48999999999999999998877643 12345557778887764 6778877
Q ss_pred HHHHHH
Q 007661 445 VAKSAV 450 (594)
Q Consensus 445 l~~~A~ 450 (594)
.+...+
T Consensus 313 ~l~~l~ 318 (445)
T PRK12422 313 ALTLLA 318 (445)
T ss_pred HHHHHH
Confidence 666553
No 84
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.3e-13 Score=147.08 Aligned_cols=225 Identities=24% Similarity=0.321 Sum_probs=149.2
Q ss_pred CccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecc------hhhh
Q 007661 220 GIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGP------EVLS 293 (594)
Q Consensus 220 ~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~------~l~~ 293 (594)
+--||++++++|+ +.++...+.+. ....-++|+||||+|||+|++.||+.++ +.++.++.. ++.+
T Consensus 324 dHYGLekVKeRIl-EyLAV~~l~~~-------~kGpILcLVGPPGVGKTSLgkSIA~al~-RkfvR~sLGGvrDEAEIRG 394 (782)
T COG0466 324 DHYGLEKVKERIL-EYLAVQKLTKK-------LKGPILCLVGPPGVGKTSLGKSIAKALG-RKFVRISLGGVRDEAEIRG 394 (782)
T ss_pred cccCchhHHHHHH-HHHHHHHHhcc-------CCCcEEEEECCCCCCchhHHHHHHHHhC-CCEEEEecCccccHHHhcc
Confidence 3789999999994 54443332221 1223478999999999999999999995 555555433 3332
Q ss_pred ---cccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCc--------
Q 007661 294 ---KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV-------- 362 (594)
Q Consensus 294 ---~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~-------- 362 (594)
.|+|....++-+-...|....| ++++||||.+...-.+. =-..||+.+|.-
T Consensus 395 HRRTYIGamPGrIiQ~mkka~~~NP---------v~LLDEIDKm~ss~rGD---------PaSALLEVLDPEQN~~F~Dh 456 (782)
T COG0466 395 HRRTYIGAMPGKIIQGMKKAGVKNP---------VFLLDEIDKMGSSFRGD---------PASALLEVLDPEQNNTFSDH 456 (782)
T ss_pred ccccccccCChHHHHHHHHhCCcCC---------eEEeechhhccCCCCCC---------hHHHHHhhcCHhhcCchhhc
Confidence 7999999999888888888776 99999999997432211 123466665532
Q ss_pred -----cccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHH--hccccCCCC-----CCcccHHHH
Q 007661 363 -----ESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHT--NKMKENSFL-----APDVNLQEL 430 (594)
Q Consensus 363 -----~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~--~~~~~~~~l-----~~~~~l~~l 430 (594)
-..++|++|+|+|..+.|+..|+. |++ .|+++-+++++..+|-+.|+ +.+..++.- ..|..+..+
T Consensus 457 YLev~yDLS~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~i 533 (782)
T COG0466 457 YLEVPYDLSKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDI 533 (782)
T ss_pred cccCccchhheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHH
Confidence 124579999999999999999998 887 79999999999999999885 222222211 123334444
Q ss_pred HHHcCCCCH-----HHHHHHHHHHHHHHHHhccCcccCCCCcccch-hhcchhHHHHHHHh
Q 007661 431 AARTKNYSG-----AELEGVAKSAVSFALNRQLSMDDLTKPVDEES-IKVTMDDFLHALYE 485 (594)
Q Consensus 431 a~~t~g~sg-----~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~-~~vt~~df~~al~~ 485 (594)
.+....-+| ++|..+|+.++..-+... ... ..++..++.+-+..
T Consensus 534 I~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~-----------~k~~~~i~~~~l~~yLG~ 583 (782)
T COG0466 534 IRYYTREAGVRNLEREIAKICRKAAKKILLKK-----------EKSIVKIDEKNLKKYLGV 583 (782)
T ss_pred HHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcC-----------cccceeeCHHHHHHHhCC
Confidence 443322222 556667777665444311 111 35666666666554
No 85
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=1.4e-12 Score=141.54 Aligned_cols=200 Identities=19% Similarity=0.236 Sum_probs=140.6
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcE--------
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK-------- 284 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~-------- 284 (594)
.-+|++ +.|.+..++.+ +.++..- +.+.++||+||||||||++|+++|+.+++....
T Consensus 17 P~~f~d--liGq~~vv~~L-~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 17 PSNFAE--LQGQEVLVKVL-SYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 456888 99999988877 6555331 334579999999999999999999999653210
Q ss_pred ---EEecchhhhc----------ccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHH
Q 007661 285 ---IVNGPEVLSK----------FVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSI 351 (594)
Q Consensus 285 ---~v~~~~l~~~----------~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~ 351 (594)
.-+|..+... ........++++++.+... |..+ ...|++|||+|.+. ...
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~-P~~~---~~KVvIIDEa~~Ls-------------~~a 144 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYK-PLQG---KHKIFIIDEVHMLS-------------KGA 144 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhc-cccC---CcEEEEEEChhhcC-------------HHH
Confidence 0011111110 0112456788888877643 3333 34599999999873 234
Q ss_pred HHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHH
Q 007661 352 VNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELA 431 (594)
Q Consensus 352 v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la 431 (594)
++.|+..++. ....+++|.+|+.++.+.+.+++ |. ..+++..++.++..++++..+++... ..++..+..++
T Consensus 145 ~naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi---~ie~eAL~~Ia 216 (507)
T PRK06645 145 FNALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENL---KTDIEALRIIA 216 (507)
T ss_pred HHHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHH
Confidence 5667777663 34577888888888889999988 54 37899999999999999988876431 23445678889
Q ss_pred HHcCCCCHHHHHHHHHHHHHHH
Q 007661 432 ARTKNYSGAELEGVAKSAVSFA 453 (594)
Q Consensus 432 ~~t~g~sg~dl~~l~~~A~~~a 453 (594)
..+.| +.+++.+++..+..++
T Consensus 217 ~~s~G-slR~al~~Ldkai~~~ 237 (507)
T PRK06645 217 YKSEG-SARDAVSILDQAASMS 237 (507)
T ss_pred HHcCC-CHHHHHHHHHHHHHhh
Confidence 88876 8889988888887654
No 86
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=1.4e-12 Score=137.54 Aligned_cols=199 Identities=18% Similarity=0.235 Sum_probs=133.1
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEE-------
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI------- 285 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~------- 285 (594)
+.+|++ |.|.+..++.+ +.++... +.+..+||+||||+|||++|+++|+.+.+.....
T Consensus 12 P~~~~~--iiGq~~~~~~l-~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 12 PQYFRD--IIGQKHIVTAI-SNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred CCchhh--ccChHHHHHHH-HHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 357888 99999988877 6655431 2334689999999999999999999986421110
Q ss_pred Eecchhhh----------cccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHH
Q 007661 286 VNGPEVLS----------KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (594)
Q Consensus 286 v~~~~l~~----------~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~L 355 (594)
.+|.++.. .........++++.+.+... |.. +...|++|||+|.+- ....+.|
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~-p~~---~~~kviIIDEa~~l~-------------~~a~naL 139 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYS-PSK---SRFKVYLIDEVHMLS-------------RHSFNAL 139 (363)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcC-ccc---CCceEEEEEChhhcC-------------HHHHHHH
Confidence 01111110 00012334566676655432 221 234599999999873 2244567
Q ss_pred HHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcC
Q 007661 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (594)
Q Consensus 356 l~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~ 435 (594)
+..++.. ..++.+|.+|+.++.+.+.+++ |+ ..+++++|+.++..++|+..+++... ..++..+..++..+.
T Consensus 140 Lk~lEe~--~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~---~i~~~al~~ia~~s~ 211 (363)
T PRK14961 140 LKTLEEP--PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESI---DTDEYALKLIAYHAH 211 (363)
T ss_pred HHHHhcC--CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcC
Confidence 7776643 3467777788888889999987 54 47999999999999999987766431 234456788888887
Q ss_pred CCCHHHHHHHHHHHHHH
Q 007661 436 NYSGAELEGVAKSAVSF 452 (594)
Q Consensus 436 g~sg~dl~~l~~~A~~~ 452 (594)
| +.+++.+++..+..+
T Consensus 212 G-~~R~al~~l~~~~~~ 227 (363)
T PRK14961 212 G-SMRDALNLLEHAINL 227 (363)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 6 778888887776543
No 87
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=4.7e-13 Score=145.78 Aligned_cols=198 Identities=17% Similarity=0.210 Sum_probs=135.2
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcE--------
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK-------- 284 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~-------- 284 (594)
..+|++ |.|.+..++.| +.++..- +.+..+||+||+|||||++|+.+++.+++...-
T Consensus 12 PqtFdd--VIGQe~vv~~L-~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 12 PRDFTT--LVGQEHVVRAL-THALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred CCcHHH--HcCcHHHHHHH-HHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 457888 99999988877 6666432 233468999999999999999999999762100
Q ss_pred -EEecc-----------hhhh--cccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHH
Q 007661 285 -IVNGP-----------EVLS--KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDS 350 (594)
Q Consensus 285 -~v~~~-----------~l~~--~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~ 350 (594)
.-.|. +++. .........++++.+.+... +..+ ...|+||||+|.|- ..
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~-P~~g---r~KViIIDEah~Ls-------------~~ 139 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYA-PTAG---RFKVYMIDEVHMLT-------------NH 139 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhc-hhcC---CceEEEEEChHhcC-------------HH
Confidence 00011 1110 00012245577777665432 2222 24599999999984 23
Q ss_pred HHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHH
Q 007661 351 IVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQEL 430 (594)
Q Consensus 351 ~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~l 430 (594)
..+.||..|+. ...++++|.+||.++.|.+.+++ |. ..+.|..++.++..+.|+..+..... ..++..+..|
T Consensus 140 AaNALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi---~~d~eAL~~I 211 (700)
T PRK12323 140 AFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGI---AHEVNALRLL 211 (700)
T ss_pred HHHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCC---CCCHHHHHHH
Confidence 56778887774 34578999999999999999998 43 37899999999998888877654321 1233446778
Q ss_pred HHHcCCCCHHHHHHHHHHHHH
Q 007661 431 AARTKNYSGAELEGVAKSAVS 451 (594)
Q Consensus 431 a~~t~g~sg~dl~~l~~~A~~ 451 (594)
++.+.| +.++..+++..+..
T Consensus 212 A~~A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 212 AQAAQG-SMRDALSLTDQAIA 231 (700)
T ss_pred HHHcCC-CHHHHHHHHHHHHH
Confidence 888776 77888888777664
No 88
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.49 E-value=2e-12 Score=128.19 Aligned_cols=195 Identities=15% Similarity=0.126 Sum_probs=118.3
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecc
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGP 289 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~ 289 (594)
++.+|++.-.|+-...+..+ +++... ....+++||||||||||++++++++++. +..+.+++..
T Consensus 17 ~~~~fd~f~~~~n~~a~~~l-~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 17 DDETFASFYPGDNDSLLAAL-QNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CcCCccccccCccHHHHHHH-HHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 67788886445444444444 543321 1234799999999999999999998763 2334555554
Q ss_pred hhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcE-
Q 007661 290 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNV- 368 (594)
Q Consensus 290 ~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v- 368 (594)
+... ...++.+.... ..+|+|||++.+..+. . ....+..+++. ....++.
T Consensus 83 ~~~~--------~~~~~~~~~~~----------~dlliiDdi~~~~~~~-------~-~~~~lf~l~n~---~~e~g~~~ 133 (235)
T PRK08084 83 KRAW--------FVPEVLEGMEQ----------LSLVCIDNIECIAGDE-------L-WEMAIFDLYNR---ILESGRTR 133 (235)
T ss_pred HHhh--------hhHHHHHHhhh----------CCEEEEeChhhhcCCH-------H-HHHHHHHHHHH---HHHcCCCe
Confidence 3221 11122222221 1399999999985321 1 12222222222 2223443
Q ss_pred EEEEeeCCccc---ccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHH
Q 007661 369 LLIGMTNRKDM---LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGV 445 (594)
Q Consensus 369 ~vI~~tn~~~~---ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l 445 (594)
+++.+++.|.. +.+.|+++......+++..|+.+++.++++.+..... ...++.-++.|+.+..+ +.+.+.++
T Consensus 134 li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~---~~l~~~v~~~L~~~~~~-d~r~l~~~ 209 (235)
T PRK08084 134 LLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRG---FELPEDVGRFLLKRLDR-EMRTLFMT 209 (235)
T ss_pred EEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhhcC-CHHHHHHH
Confidence 44444455554 5799998333347999999999999999987665432 23455568889998876 77888888
Q ss_pred HHHHHHHH
Q 007661 446 AKSAVSFA 453 (594)
Q Consensus 446 ~~~A~~~a 453 (594)
+......+
T Consensus 210 l~~l~~~~ 217 (235)
T PRK08084 210 LDQLDRAS 217 (235)
T ss_pred HHHHHHHH
Confidence 77754333
No 89
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.48 E-value=1.1e-12 Score=138.65 Aligned_cols=194 Identities=16% Similarity=0.231 Sum_probs=129.7
Q ss_pred cccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcE-----------
Q 007661 216 LQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK----------- 284 (594)
Q Consensus 216 ~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~----------- 284 (594)
|++ |+|.+..++.+ ++++.....++ ..++.+.+.++||+||||+|||++|+++|+.+.+....
T Consensus 4 f~~--IiGq~~~~~~L-~~~i~~~~~~~---~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~ 77 (394)
T PRK07940 4 WDD--LVGQEAVVAEL-RAAARAARADV---AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACR 77 (394)
T ss_pred hhh--ccChHHHHHHH-HHHHHhccccc---cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHH
Confidence 677 99999999888 88887654332 23344567789999999999999999999987543210
Q ss_pred ---EEecchhhhc---ccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHh
Q 007661 285 ---IVNGPEVLSK---FVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTK 358 (594)
Q Consensus 285 ---~v~~~~l~~~---~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ 358 (594)
.-+.+++.-- -..-.-..+|++++.+... |.. +...|+||||+|.+.+ ...+.||..
T Consensus 78 ~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~-p~~---~~~kViiIDead~m~~-------------~aanaLLk~ 140 (394)
T PRK07940 78 TVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARR-PST---GRWRIVVIEDADRLTE-------------RAANALLKA 140 (394)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhC-ccc---CCcEEEEEechhhcCH-------------HHHHHHHHH
Confidence 0001111000 0011234588888877653 222 2346999999999842 234667777
Q ss_pred hcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCC
Q 007661 359 IDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYS 438 (594)
Q Consensus 359 ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~s 438 (594)
|+.. ..+.++|.+|+.++.+.|.+++ |. ..+.|++|+.++..+.|.... . . +......++..++|..
T Consensus 141 LEep--~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~----~-~~~~a~~la~~s~G~~ 207 (394)
T PRK07940 141 VEEP--PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---G----V-DPETARRAARASQGHI 207 (394)
T ss_pred hhcC--CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---C----C-CHHHHHHHHHHcCCCH
Confidence 7643 3455566666668999999998 54 389999999999888876321 1 1 2345678899999988
Q ss_pred HHHHHHH
Q 007661 439 GAELEGV 445 (594)
Q Consensus 439 g~dl~~l 445 (594)
++.+.-+
T Consensus 208 ~~A~~l~ 214 (394)
T PRK07940 208 GRARRLA 214 (394)
T ss_pred HHHHHHh
Confidence 8666543
No 90
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=2.3e-12 Score=138.74 Aligned_cols=194 Identities=19% Similarity=0.220 Sum_probs=139.1
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCC----------
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME---------- 282 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~---------- 282 (594)
..+|++ +.|.+..++.+ +.++..- +.+.++||+||+|+|||++|+.+|+.+++..
T Consensus 9 P~~f~d--liGQe~vv~~L-~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 9 PSSFKD--LVGQDVLVRIL-RNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 367898 99999988776 6666432 3355899999999999999999999875421
Q ss_pred -------------cEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHH
Q 007661 283 -------------PKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHD 349 (594)
Q Consensus 283 -------------~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~ 349 (594)
++.+++++ ......+|++.+.+... |.. +...|++|||+|.+- .
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~-P~~---~~~KVvIIDEah~Ls-------------~ 130 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYL-PIS---SKFKVYIIDEVHMLS-------------N 130 (491)
T ss_pred HHHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhc-ccc---CCceEEEEeChHhCC-------------H
Confidence 11222211 12345688888777543 332 235699999999873 2
Q ss_pred HHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHH
Q 007661 350 SIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQE 429 (594)
Q Consensus 350 ~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~ 429 (594)
..++.|+..++.. ...+.+|.+|+.++.+.+.+++ |. ..+++..++.++..+.++..+++... ..++..+..
T Consensus 131 ~A~NaLLK~LEeP--p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi---~i~~eAL~l 202 (491)
T PRK14964 131 SAFNALLKTLEEP--APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENI---EHDEESLKL 202 (491)
T ss_pred HHHHHHHHHHhCC--CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCC---CCCHHHHHH
Confidence 3566788887753 3467888888888889999988 43 36899999999999999888765432 234556788
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHH
Q 007661 430 LAARTKNYSGAELEGVAKSAVSFA 453 (594)
Q Consensus 430 la~~t~g~sg~dl~~l~~~A~~~a 453 (594)
|++.+.| +.+++.+++..+..+.
T Consensus 203 Ia~~s~G-slR~alslLdqli~y~ 225 (491)
T PRK14964 203 IAENSSG-SMRNALFLLEQAAIYS 225 (491)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHhc
Confidence 8888865 8888888888877654
No 91
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.48 E-value=1.7e-12 Score=135.05 Aligned_cols=179 Identities=26% Similarity=0.363 Sum_probs=126.3
Q ss_pred ccCcHHHHHHHHHHHHHccCC----ChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh-cc
Q 007661 221 IGGLSAEFADIFRRAFASRVF----PPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS-KF 295 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~----~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~-~~ 295 (594)
|.|.++.++.+ ..++..... .+++. .-.+|++|||+||||||||++|+++|+.+ +.+++.+++..+.. .|
T Consensus 14 IiGQ~eAkk~l-svAl~n~~~r~~~~~~~~---~e~~p~~ILLiGppG~GKT~lAraLA~~l-~~~fi~vdat~~~e~g~ 88 (441)
T TIGR00390 14 IIGQDNAKKSV-AIALRNRYRRSQLNEELK---DEVTPKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEATKFTEVGY 88 (441)
T ss_pred ccCHHHHHHHH-HHHHHhhhhhhccccccc---cccCCceEEEECCCCCCHHHHHHHHHHHh-CCeEEEeecceeecCCc
Confidence 89999998888 555543211 12211 12356899999999999999999999998 46778889888874 78
Q ss_pred cc-hhHHHHHHHHHHHHh-------------------------------hc-----------------------------
Q 007661 296 VG-ETEKNIRDLFADAEN-------------------------------DQ----------------------------- 314 (594)
Q Consensus 296 ~g-~~~~~i~~lf~~a~~-------------------------------~~----------------------------- 314 (594)
.| +.+..++.+|+.|.. ..
T Consensus 89 vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~ 168 (441)
T TIGR00390 89 VGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDK 168 (441)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCc
Confidence 88 678888999888711 00
Q ss_pred -----------cccC------------------------------------------------------------CCCCc
Q 007661 315 -----------RTRG------------------------------------------------------------DQSDL 323 (594)
Q Consensus 315 -----------~~~~------------------------------------------------------------~~~~~ 323 (594)
+..+ ....-
T Consensus 169 ~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~ 248 (441)
T TIGR00390 169 EIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQS 248 (441)
T ss_pred EEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcC
Confidence 0000 00123
Q ss_pred EEEEEccchhhhccCCCCCCCCch-HHHHHHHHHHhhcCc--------cccCcEEEEEeeC----CcccccHHhhCCCCc
Q 007661 324 HVIIFDEIDAICKSRGSTRDGTGV-HDSIVNQLLTKIDGV--------ESLNNVLLIGMTN----RKDMLDEALLRPGRL 390 (594)
Q Consensus 324 ~Il~iDEid~l~~~~~~~~~~~~~-~~~~v~~Ll~~ld~~--------~~~~~v~vI~~tn----~~~~ld~al~r~gRf 390 (594)
-||||||||.++.+..+.. ..+ ..-+...||..++|- -...++++|++.- .|++|=|.|. |||
T Consensus 249 GIVfiDEiDKIa~~~~~~~--~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~ 324 (441)
T TIGR00390 249 GIIFIDEIDKIAKKGESSG--ADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRF 324 (441)
T ss_pred CEEEEEchhhhcccCCCCC--CCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--Ccc
Confidence 3999999999997653221 122 233667788888873 2345788888763 4666777784 599
Q ss_pred cceeecCCCCHHHHHHHH
Q 007661 391 EVQVEISLPDENGRLQIL 408 (594)
Q Consensus 391 ~~~i~i~~P~~~~r~~IL 408 (594)
+..+++..++.+...+||
T Consensus 325 Pi~v~L~~L~~edL~rIL 342 (441)
T TIGR00390 325 PIRVELQALTTDDFERIL 342 (441)
T ss_pred ceEEECCCCCHHHHHHHh
Confidence 999999999999999998
No 92
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.47 E-value=3.1e-14 Score=144.76 Aligned_cols=61 Identities=11% Similarity=-0.032 Sum_probs=57.8
Q ss_pred hcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc---cccccchhhhHHHHHHHhhhc
Q 007661 528 VSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM---IGLHESTKCAQIVKVSECQFS 592 (594)
Q Consensus 528 ~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~---vG~sE~~~~~~ir~~F~~A~~ 592 (594)
..+.++|.++|||||||||||++|+++|+++|++||.++++|++ +||||++ ||++|+.|+.
T Consensus 142 ~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~----IR~~F~~A~~ 205 (413)
T PLN00020 142 LPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKL----IRQRYREAAD 205 (413)
T ss_pred ccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHH----HHHHHHHHHH
Confidence 46789999999999999999999999999999999999999995 9999998 9999999974
No 93
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=2.5e-12 Score=140.53 Aligned_cols=199 Identities=18% Similarity=0.220 Sum_probs=135.3
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEE-------
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI------- 285 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~------- 285 (594)
.-+|++ |.|.+..++.| +.++..- +.+..+||+||||||||++|+++|+.+++.....
T Consensus 11 PktFdd--VIGQe~vv~~L-~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 11 PRNFNE--LVGQNHVSRAL-SSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 357888 99999988877 6666421 2345789999999999999999999986532100
Q ss_pred Eecc--------hhhhcc--cchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHH
Q 007661 286 VNGP--------EVLSKF--VGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (594)
Q Consensus 286 v~~~--------~l~~~~--~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~L 355 (594)
-+|. +++.-. .......+|++.+.+... |..+ ...|+||||+|.|- ....+.|
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~-P~~g---k~KV~IIDEVh~LS-------------~~A~NAL 138 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYA-PTQG---RFKVYLIDEVHMLS-------------THSFNAL 138 (702)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhh-hhcC---CcEEEEEechHhcC-------------HHHHHHH
Confidence 0111 111000 012344577777665432 2222 24599999999884 2245667
Q ss_pred HHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcC
Q 007661 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (594)
Q Consensus 356 l~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~ 435 (594)
+..++.. ...+.+|.+|+.+..+.+.+++ |+ ..++|..++.++..+.|+..+++... ..++..+..+++.+.
T Consensus 139 LKtLEEP--P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI---~id~eAL~~IA~~S~ 210 (702)
T PRK14960 139 LKTLEEP--PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQI---AADQDAIWQIAESAQ 210 (702)
T ss_pred HHHHhcC--CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcC
Confidence 7777643 3567888888888888888887 54 37899999999999999888765431 234556888898887
Q ss_pred CCCHHHHHHHHHHHHHH
Q 007661 436 NYSGAELEGVAKSAVSF 452 (594)
Q Consensus 436 g~sg~dl~~l~~~A~~~ 452 (594)
| +.+++.+++..+..+
T Consensus 211 G-dLRdALnLLDQaIay 226 (702)
T PRK14960 211 G-SLRDALSLTDQAIAY 226 (702)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 6 888888888776644
No 94
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.47 E-value=4.5e-14 Score=135.07 Aligned_cols=69 Identities=20% Similarity=0.290 Sum_probs=59.3
Q ss_pred HHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc---cccccchhhhHHHHHHHhhhcCC
Q 007661 522 LVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM---IGLHESTKCAQIVKVSECQFSGS 594 (594)
Q Consensus 522 ~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~---vG~sE~~~~~~ir~~F~~A~~~~ 594 (594)
+.+-..+++.-.|++||||||||||||++|||||++.+.||+.||.++++ ||+.-+. |+++|++|+++.
T Consensus 139 yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~----Ihely~rA~~~a 210 (368)
T COG1223 139 YLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARR----IHELYERARKAA 210 (368)
T ss_pred HhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHH----HHHHHHHHHhcC
Confidence 33334456777889999999999999999999999999999999999996 8876554 999999999863
No 95
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.47 E-value=1.6e-12 Score=127.21 Aligned_cols=206 Identities=19% Similarity=0.285 Sum_probs=123.7
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC----CCCcEEEe
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN----GMEPKIVN 287 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~----~~~~~~v~ 287 (594)
|+++|++.-+|.-.+..-...+.....+ + .....++||||+|+|||+|++++++++. +..+.+++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~----------~-~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENP----------G-ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHST----------T-TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcC----------C-CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 7889999644544443333323222211 1 1234589999999999999999998862 44577888
Q ss_pred cchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCc
Q 007661 288 GPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNN 367 (594)
Q Consensus 288 ~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~ 367 (594)
+.++...+.......-..-|...... .++|+|||++.+..+ ......|...++.+...++
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~~~---------~DlL~iDDi~~l~~~-----------~~~q~~lf~l~n~~~~~~k 131 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRLRS---------ADLLIIDDIQFLAGK-----------QRTQEELFHLFNRLIESGK 131 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHCT---------SSEEEEETGGGGTTH-----------HHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcccchhhhhhhhc---------CCEEEEecchhhcCc-----------hHHHHHHHHHHHHHHhhCC
Confidence 88887765433322111222222222 349999999998622 2233445555555555566
Q ss_pred EEEEEeeCCccc---ccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHH
Q 007661 368 VLLIGMTNRKDM---LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEG 444 (594)
Q Consensus 368 v~vI~~tn~~~~---ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~ 444 (594)
.+|+.+...|.. +++.|.++......+++..|+.+.|.+|++.+...... ..++.-++.|+....+ +.++|++
T Consensus 132 ~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~---~l~~~v~~~l~~~~~~-~~r~L~~ 207 (219)
T PF00308_consen 132 QLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGI---ELPEEVIEYLARRFRR-DVRELEG 207 (219)
T ss_dssp EEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT-----S-HHHHHHHHHHTTS-SHHHHHH
T ss_pred eEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC---CCcHHHHHHHHHhhcC-CHHHHHH
Confidence 666666666654 57888883334569999999999999999988776442 2344457788888764 7888888
Q ss_pred HHHHHHHH
Q 007661 445 VAKSAVSF 452 (594)
Q Consensus 445 l~~~A~~~ 452 (594)
++..-..+
T Consensus 208 ~l~~l~~~ 215 (219)
T PF00308_consen 208 ALNRLDAY 215 (219)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87765543
No 96
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.9e-12 Score=141.29 Aligned_cols=199 Identities=19% Similarity=0.212 Sum_probs=134.5
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEE-E-----
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI-V----- 286 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~-v----- 286 (594)
.-+|++ |.|.+..++.+ +.++..- +.+..+||+||||||||++|+++|+.+++..... -
T Consensus 12 P~~f~d--ivGq~~v~~~L-~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 12 PRCFQE--VIGQAPVVRAL-SNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred CCCHHH--hcCCHHHHHHH-HHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 457888 99999998888 6665432 2334689999999999999999999997532110 0
Q ss_pred -ecchh--------hh--cccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHH
Q 007661 287 -NGPEV--------LS--KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (594)
Q Consensus 287 -~~~~l--------~~--~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~L 355 (594)
+|..+ .. .........+|++.+.+.. .|..+ ...|++|||+|.+- ....+.|
T Consensus 77 ~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~-~p~~~---~~kV~iIDE~~~ls-------------~~a~naL 139 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPY-APTKG---RFKVYLIDEVHMLS-------------GHSFNAL 139 (509)
T ss_pred HHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhh-ccccC---CcEEEEEEChHhcC-------------HHHHHHH
Confidence 01111 00 0011233456777665543 23323 24599999999984 2345677
Q ss_pred HHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcC
Q 007661 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (594)
Q Consensus 356 l~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~ 435 (594)
+..|+.. ..++.+|.+|+.+..+.+.+++ |. ..++|..++.++....++..+++... ..++..+..+++.+.
T Consensus 140 Lk~LEep--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi---~~~~~al~~ia~~s~ 211 (509)
T PRK14958 140 LKTLEEP--PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENV---EFENAALDLLARAAN 211 (509)
T ss_pred HHHHhcc--CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcC
Confidence 7777743 3568888888888888888888 43 36889999998888888877765431 234456788888886
Q ss_pred CCCHHHHHHHHHHHHHH
Q 007661 436 NYSGAELEGVAKSAVSF 452 (594)
Q Consensus 436 g~sg~dl~~l~~~A~~~ 452 (594)
| +.+++.+++..+..+
T Consensus 212 G-slR~al~lLdq~ia~ 227 (509)
T PRK14958 212 G-SVRDALSLLDQSIAY 227 (509)
T ss_pred C-cHHHHHHHHHHHHhc
Confidence 5 788998888877654
No 97
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.46 E-value=1.4e-12 Score=135.80 Aligned_cols=184 Identities=26% Similarity=0.359 Sum_probs=128.2
Q ss_pred CccCcHHHHHHHHHHHHHccCCChhhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh-cccc
Q 007661 220 GIGGLSAEFADIFRRAFASRVFPPHVTSKLG-IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS-KFVG 297 (594)
Q Consensus 220 ~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g-~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~-~~~g 297 (594)
.|.|.+..++.+ ..++........+...+. -..|+++||+||||||||++|+++|+.+ +.+++.+++.++.. .|.|
T Consensus 16 ~IiGQe~Akkal-avAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l-~~~fi~vD~t~f~e~GyvG 93 (443)
T PRK05201 16 YIIGQDDAKRAV-AIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEATKFTEVGYVG 93 (443)
T ss_pred ccCCHHHHHHHH-HHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh-CChheeecchhhccCCccc
Confidence 399999999888 555543211111111110 1135899999999999999999999998 57788899988885 7988
Q ss_pred -hhHHHHHHHHHHHHhhc--------------------------------------------------------------
Q 007661 298 -ETEKNIRDLFADAENDQ-------------------------------------------------------------- 314 (594)
Q Consensus 298 -~~~~~i~~lf~~a~~~~-------------------------------------------------------------- 314 (594)
+.+..++.+|+.|....
T Consensus 94 ~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~i 173 (443)
T PRK05201 94 RDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEI 173 (443)
T ss_pred CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEE
Confidence 66888999999882000
Q ss_pred --------cccC--C----------------------------------------------------------CCCcEEE
Q 007661 315 --------RTRG--D----------------------------------------------------------QSDLHVI 326 (594)
Q Consensus 315 --------~~~~--~----------------------------------------------------------~~~~~Il 326 (594)
+..+ . ...--||
T Consensus 174 ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIV 253 (443)
T PRK05201 174 EIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIV 253 (443)
T ss_pred EEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEE
Confidence 0000 0 0023499
Q ss_pred EEccchhhhccCCCCCCCCchH-HHHHHHHHHhhcCc--------cccCcEEEEEee----CCcccccHHhhCCCCccce
Q 007661 327 IFDEIDAICKSRGSTRDGTGVH-DSIVNQLLTKIDGV--------ESLNNVLLIGMT----NRKDMLDEALLRPGRLEVQ 393 (594)
Q Consensus 327 ~iDEid~l~~~~~~~~~~~~~~-~~~v~~Ll~~ld~~--------~~~~~v~vI~~t----n~~~~ld~al~r~gRf~~~ 393 (594)
||||||.|+.+.++. +..+. .-+...||..++|- -...++++|++. ..|++|-|.|. |||+..
T Consensus 254 fiDEiDKIa~~~~~~--~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~ 329 (443)
T PRK05201 254 FIDEIDKIAARGGSS--GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIR 329 (443)
T ss_pred EEEcchhhcccCCCC--CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceE
Confidence 999999999775432 11222 34677788888873 234678888875 34666778885 599999
Q ss_pred eecCCCCHHHHHHHHH
Q 007661 394 VEISLPDENGRLQILQ 409 (594)
Q Consensus 394 i~i~~P~~~~r~~IL~ 409 (594)
+++..++++...+||.
T Consensus 330 v~L~~L~~~dL~~ILt 345 (443)
T PRK05201 330 VELDALTEEDFVRILT 345 (443)
T ss_pred EECCCCCHHHHHHHhc
Confidence 9999999999999983
No 98
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=2.1e-12 Score=142.99 Aligned_cols=198 Identities=19% Similarity=0.230 Sum_probs=134.3
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEE----Eec
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI----VNG 288 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~----v~~ 288 (594)
.-+|++ |.|.+..++.| +.++..- +.+..+||+||+|||||++|+.+|+.+++..... -.|
T Consensus 12 P~~f~d--ivGQe~vv~~L-~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 12 PQTFAE--VVGQEHVLTAL-ANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 357888 99999988877 6665431 2234579999999999999999999997632100 001
Q ss_pred ---c--------hhh--hcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHH
Q 007661 289 ---P--------EVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (594)
Q Consensus 289 ---~--------~l~--~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~L 355 (594)
. +++ +.-.......+|++.+.+... |..+ ...|+||||+|.|- ....+.|
T Consensus 77 ~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~-p~~g---~~KV~IIDEah~Ls-------------~~a~NAL 139 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYA-PARG---RFKVYLIDEVHMLS-------------RHSFNAL 139 (647)
T ss_pred HHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhh-hhcC---CCEEEEEechHhCC-------------HHHHHHH
Confidence 1 111 000011234567776665432 2222 24599999999984 3356778
Q ss_pred HHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcC
Q 007661 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (594)
Q Consensus 356 l~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~ 435 (594)
|..|+. ...++.+|.+|+.++.|.+.+++ |. ..++|..++.++..+.|+..++... ...++..+..|+..+.
T Consensus 140 LKtLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~---i~~e~~aL~~Ia~~s~ 211 (647)
T PRK07994 140 LKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQ---IPFEPRALQLLARAAD 211 (647)
T ss_pred HHHHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcC
Confidence 777774 34578888889899999999998 53 5899999999999999988775432 1234456778888887
Q ss_pred CCCHHHHHHHHHHHHH
Q 007661 436 NYSGAELEGVAKSAVS 451 (594)
Q Consensus 436 g~sg~dl~~l~~~A~~ 451 (594)
| +.++..+++..|..
T Consensus 212 G-s~R~Al~lldqaia 226 (647)
T PRK07994 212 G-SMRDALSLTDQAIA 226 (647)
T ss_pred C-CHHHHHHHHHHHHH
Confidence 6 77788788876653
No 99
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.46 E-value=4.9e-12 Score=132.45 Aligned_cols=193 Identities=18% Similarity=0.213 Sum_probs=121.9
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCC----CcEEEec
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGM----EPKIVNG 288 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~----~~~~v~~ 288 (594)
..+|++ +.|.+..++.+ ..++... ...++||+||||||||++|+++++++.+. .+..+++
T Consensus 11 P~~~~~--~~g~~~~~~~L-~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 11 PALLED--ILGQDEVVERL-SRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred CCcHHH--hcCCHHHHHHH-HHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 345777 88999988887 6655421 12369999999999999999999998533 3466777
Q ss_pred chhhhcc-------------cch-------hHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchH
Q 007661 289 PEVLSKF-------------VGE-------TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVH 348 (594)
Q Consensus 289 ~~l~~~~-------------~g~-------~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~ 348 (594)
.++.... .+. ....++.+.+......|.. ..+.+|+|||+|.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~vlilDe~~~l~~------------ 139 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLS---ADYKTILLDNAEALRE------------ 139 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCC---CCCcEEEEeCcccCCH------------
Confidence 6654221 111 1223344443443333321 2345999999998741
Q ss_pred HHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHH
Q 007661 349 DSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQ 428 (594)
Q Consensus 349 ~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~ 428 (594)
...+.|...++... ....+|.+++.+..+.+.+++ |. ..+++.+|+.++..++++..+++... ..++..+.
T Consensus 140 -~~~~~L~~~le~~~--~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~---~~~~~al~ 210 (337)
T PRK12402 140 -DAQQALRRIMEQYS--RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGV---DYDDDGLE 210 (337)
T ss_pred -HHHHHHHHHHHhcc--CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHH
Confidence 12234444454332 234566667666777788887 43 37899999999999999988765432 13455688
Q ss_pred HHHHHcCCCCHHHHHHHH
Q 007661 429 ELAARTKNYSGAELEGVA 446 (594)
Q Consensus 429 ~la~~t~g~sg~dl~~l~ 446 (594)
.|+..+.| +.+++.+.+
T Consensus 211 ~l~~~~~g-dlr~l~~~l 227 (337)
T PRK12402 211 LIAYYAGG-DLRKAILTL 227 (337)
T ss_pred HHHHHcCC-CHHHHHHHH
Confidence 88887743 444444333
No 100
>PRK05642 DNA replication initiation factor; Validated
Probab=99.46 E-value=3.7e-12 Score=126.13 Aligned_cols=199 Identities=14% Similarity=0.160 Sum_probs=124.8
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecc
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGP 289 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~ 289 (594)
+..+|++. +.|-..+....++..... .+-.+..+++||||+|||||+|++++++++. +..+.+++..
T Consensus 14 ~~~tfdnF-~~~~~~~a~~~~~~~~~~----------~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~ 82 (234)
T PRK05642 14 DDATFANY-YPGANAAALGYVERLCEA----------DAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA 82 (234)
T ss_pred Cccccccc-CcCChHHHHHHHHHHhhc----------cccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH
Confidence 77889986 334433322222322111 0112336789999999999999999998763 4566778877
Q ss_pred hhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEE
Q 007661 290 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVL 369 (594)
Q Consensus 290 ~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~ 369 (594)
++.... ..+.+.... .++|+|||++.+..+. ... ..|...++.....+..+
T Consensus 83 ~~~~~~--------~~~~~~~~~----------~d~LiiDDi~~~~~~~--------~~~---~~Lf~l~n~~~~~g~~i 133 (234)
T PRK05642 83 ELLDRG--------PELLDNLEQ----------YELVCLDDLDVIAGKA--------DWE---EALFHLFNRLRDSGRRL 133 (234)
T ss_pred HHHhhh--------HHHHHhhhh----------CCEEEEechhhhcCCh--------HHH---HHHHHHHHHHHhcCCEE
Confidence 765421 122222222 2399999999875321 111 23444444444445677
Q ss_pred EEEeeCCccc---ccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHH
Q 007661 370 LIGMTNRKDM---LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVA 446 (594)
Q Consensus 370 vI~~tn~~~~---ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~ 446 (594)
+++++..|.. ..+.|+++......+.+..|+.++|.++++.+..... ...++..++.|+.+..+ +.+.+.+++
T Consensus 134 lits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~---~~l~~ev~~~L~~~~~~-d~r~l~~~l 209 (234)
T PRK05642 134 LLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG---LHLTDEVGHFILTRGTR-SMSALFDLL 209 (234)
T ss_pred EEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhcCC-CHHHHHHHH
Confidence 7777766654 3688988333357888999999999999996655432 12445567888888775 788888777
Q ss_pred HHHHHHHH
Q 007661 447 KSAVSFAL 454 (594)
Q Consensus 447 ~~A~~~a~ 454 (594)
..-...++
T Consensus 210 ~~l~~~~l 217 (234)
T PRK05642 210 ERLDQASL 217 (234)
T ss_pred HHHHHHHH
Confidence 76554444
No 101
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=8.9e-12 Score=130.46 Aligned_cols=233 Identities=18% Similarity=0.226 Sum_probs=149.7
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCC----CCcEEEe
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG----MEPKIVN 287 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~----~~~~~v~ 287 (594)
+++.-+. +-+.+.|+.++ ...+...+. -..|.++++|||||||||.+++.+++++.. ..+.+||
T Consensus 12 ~~~iP~~--l~~Re~ei~~l-~~~l~~~~~---------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN 79 (366)
T COG1474 12 EDYIPEE--LPHREEEINQL-ASFLAPALR---------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN 79 (366)
T ss_pred CCCCccc--ccccHHHHHHH-HHHHHHHhc---------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe
Confidence 4444455 89999999999 555444332 234557999999999999999999999842 2267899
Q ss_pred cchhhhccc------------chhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHH
Q 007661 288 GPEVLSKFV------------GETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (594)
Q Consensus 288 ~~~l~~~~~------------g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~L 355 (594)
|...-+.|. -.......++|+...+.... .....||++||+|.|..+.+ .++..|
T Consensus 80 c~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~---~~~~~IvvLDEid~L~~~~~----------~~LY~L 146 (366)
T COG1474 80 CLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSK---KGKTVIVILDEVDALVDKDG----------EVLYSL 146 (366)
T ss_pred eeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHh---cCCeEEEEEcchhhhccccc----------hHHHHH
Confidence 876654220 00001122223322222221 12356999999999985432 466677
Q ss_pred HHhhcCccccCcEEEEEeeCCcc---cccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHH
Q 007661 356 LTKIDGVESLNNVLLIGMTNRKD---MLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAA 432 (594)
Q Consensus 356 l~~ld~~~~~~~v~vI~~tn~~~---~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~ 432 (594)
+...+.. ..++.+|+.+|..+ .+|+.+.+... ..+|.|++++.+|..+||+...+.-...+.+.++ -++.+|.
T Consensus 147 ~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s~l~-~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~-vl~lia~ 222 (366)
T COG1474 147 LRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKSSLG-PSEIVFPPYTAEELYDILRERVEEGFSAGVIDDD-VLKLIAA 222 (366)
T ss_pred Hhhcccc--ceeEEEEEEeccHHHHHHhhhhhhhccC-cceeeeCCCCHHHHHHHHHHHHHhhccCCCcCcc-HHHHHHH
Confidence 7665544 45789999999864 58899987332 3458999999999999999887754433323332 2444443
Q ss_pred HcCCC--CHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhc
Q 007661 433 RTKNY--SGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (594)
Q Consensus 433 ~t~g~--sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~ 486 (594)
..... ..+-.-.+|+.|+..|.++. ...++.++..+|..++
T Consensus 223 ~~a~~~GDAR~aidilr~A~eiAe~~~-------------~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 223 LVAAESGDARKAIDILRRAGEIAEREG-------------SRKVSEDHVREAQEEI 265 (366)
T ss_pred HHHHcCccHHHHHHHHHHHHHHHHhhC-------------CCCcCHHHHHHHHHHh
Confidence 33222 33444568999998887643 3567777777775544
No 102
>PRK08727 hypothetical protein; Validated
Probab=99.46 E-value=5.3e-12 Score=124.99 Aligned_cols=188 Identities=17% Similarity=0.240 Sum_probs=115.0
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecc
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGP 289 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~ 289 (594)
++.+|++. ++|-......+ +.... + .....++|+||+|||||++++++++++. +....+++..
T Consensus 14 ~~~~f~~f-~~~~~n~~~~~-~~~~~------------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 14 SDQRFDSY-IAAPDGLLAQL-QALAA------------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred CcCChhhc-cCCcHHHHHHH-HHHHh------------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 67789986 56666555444 22111 1 1234599999999999999999988763 2344555544
Q ss_pred hhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEE
Q 007661 290 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVL 369 (594)
Q Consensus 290 ~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~ 369 (594)
++. ..+.+.++.... ..+|+|||++.+..+. .....+-.+++.. ... +..
T Consensus 79 ~~~--------~~~~~~~~~l~~----------~dlLiIDDi~~l~~~~--------~~~~~lf~l~n~~---~~~-~~~ 128 (233)
T PRK08727 79 AAA--------GRLRDALEALEG----------RSLVALDGLESIAGQR--------EDEVALFDFHNRA---RAA-GIT 128 (233)
T ss_pred Hhh--------hhHHHHHHHHhc----------CCEEEEeCcccccCCh--------HHHHHHHHHHHHH---HHc-CCe
Confidence 432 223334443332 3499999999876322 1122222333332 222 333
Q ss_pred EEEeeC-Cccc---ccHHhhCCCCc--cceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHH
Q 007661 370 LIGMTN-RKDM---LDEALLRPGRL--EVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELE 443 (594)
Q Consensus 370 vI~~tn-~~~~---ld~al~r~gRf--~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~ 443 (594)
+|.++| .|+. +++.|++ || ...++++.|+.+++.+|++.++.... ...++..+..|++++.| ..+.+.
T Consensus 129 vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~---l~l~~e~~~~La~~~~r-d~r~~l 202 (233)
T PRK08727 129 LLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRG---LALDEAAIDWLLTHGER-ELAGLV 202 (233)
T ss_pred EEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhCCC-CHHHHH
Confidence 444444 5554 4789988 64 66899999999999999998765421 13455668889988764 444554
Q ss_pred HHHHHHH
Q 007661 444 GVAKSAV 450 (594)
Q Consensus 444 ~l~~~A~ 450 (594)
+++....
T Consensus 203 ~~L~~l~ 209 (233)
T PRK08727 203 ALLDRLD 209 (233)
T ss_pred HHHHHHH
Confidence 4555444
No 103
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.46 E-value=2.7e-12 Score=138.45 Aligned_cols=181 Identities=13% Similarity=0.224 Sum_probs=117.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhhC----CCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEcc
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKMLN----GMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 330 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l~----~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDE 330 (594)
.+++|||++|+|||+|++++++++. +..+.++++.++...+........ +.++....... ..++|+|||
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~-~~~~~~~~~~~------~~dvLiIDD 214 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTH-KEIEQFKNEIC------QNDVLIIDD 214 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhh-hHHHHHHHHhc------cCCEEEEec
Confidence 4699999999999999999999763 345678888888776654332211 11222222111 245999999
Q ss_pred chhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCccc---ccHHhhCCCCccceeecCCCCHHHHHHH
Q 007661 331 IDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDM---LDEALLRPGRLEVQVEISLPDENGRLQI 407 (594)
Q Consensus 331 id~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~---ld~al~r~gRf~~~i~i~~P~~~~r~~I 407 (594)
++.+..+. .... .|...++.....++.+|+.+...|+. +++.|+++......+.+..|+.++|.+|
T Consensus 215 iq~l~~k~--------~~~e---~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 215 VQFLSYKE--------KTNE---IFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred cccccCCH--------HHHH---HHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 99885321 1222 23333332223344444444444544 5789988444467899999999999999
Q ss_pred HHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 007661 408 LQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALN 455 (594)
Q Consensus 408 L~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~ 455 (594)
|+.+++..... ...++..+..|+..+.| +.+.+.+++..+...+..
T Consensus 284 L~~~~~~~gl~-~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~ 329 (450)
T PRK14087 284 IKKEIKNQNIK-QEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQ 329 (450)
T ss_pred HHHHHHhcCCC-CCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhc
Confidence 99988754211 12445567888888876 889999999888766654
No 104
>PRK04195 replication factor C large subunit; Provisional
Probab=99.45 E-value=3.2e-12 Score=139.98 Aligned_cols=195 Identities=22% Similarity=0.267 Sum_probs=130.5
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhh
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL 292 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~ 292 (594)
+-+|++ +.|.+++++++ +.++..... | .+++++|||||||||||++|+++|+++ +..++.+++++..
T Consensus 10 P~~l~d--lvg~~~~~~~l-~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el-~~~~ielnasd~r 76 (482)
T PRK04195 10 PKTLSD--VVGNEKAKEQL-REWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDY-GWEVIELNASDQR 76 (482)
T ss_pred CCCHHH--hcCCHHHHHHH-HHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHc-CCCEEEEcccccc
Confidence 345777 99999999888 666643321 1 336789999999999999999999998 4667777776543
Q ss_pred hcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEE
Q 007661 293 SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIG 372 (594)
Q Consensus 293 ~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~ 372 (594)
. ...++.+...+....+..+ ..+.+|+|||+|.+..+. ....++.|+..++. .+..+|.
T Consensus 77 ~------~~~i~~~i~~~~~~~sl~~--~~~kvIiIDEaD~L~~~~---------d~~~~~aL~~~l~~----~~~~iIl 135 (482)
T PRK04195 77 T------ADVIERVAGEAATSGSLFG--ARRKLILLDEVDGIHGNE---------DRGGARAILELIKK----AKQPIIL 135 (482)
T ss_pred c------HHHHHHHHHHhhccCcccC--CCCeEEEEecCccccccc---------chhHHHHHHHHHHc----CCCCEEE
Confidence 2 2344445444443322221 135699999999986421 11233455555542 3445667
Q ss_pred eeCCcccccH-HhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHH
Q 007661 373 MTNRKDMLDE-ALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVS 451 (594)
Q Consensus 373 ~tn~~~~ld~-al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~ 451 (594)
++|.+..+.+ .+++ | ...|+|+.|+.+++..+|+..++.... ..++..+..|++.+.| |+..++.....
T Consensus 136 i~n~~~~~~~k~Lrs--r-~~~I~f~~~~~~~i~~~L~~i~~~egi---~i~~eaL~~Ia~~s~G----DlR~ain~Lq~ 205 (482)
T PRK04195 136 TANDPYDPSLRELRN--A-CLMIEFKRLSTRSIVPVLKRICRKEGI---ECDDEALKEIAERSGG----DLRSAINDLQA 205 (482)
T ss_pred eccCccccchhhHhc--c-ceEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCC----CHHHHHHHHHH
Confidence 7888887776 6665 3 348999999999999999988875432 2345568888887754 66655554444
No 105
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=3.1e-12 Score=141.02 Aligned_cols=199 Identities=21% Similarity=0.229 Sum_probs=137.3
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEE-Ee----
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI-VN---- 287 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~-v~---- 287 (594)
.-+|++ |.|.+..++.| +.++... +.+..+||+||+|||||++|+++++.+++..... ..
T Consensus 12 P~tFdd--IIGQe~vv~~L-~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 12 PKTFAD--LVGQEHVVKAL-QNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred CCCHHH--HcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 457888 99999998887 6666532 3346799999999999999999999986532110 00
Q ss_pred --cc--------hhh--hcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHH
Q 007661 288 --GP--------EVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (594)
Q Consensus 288 --~~--------~l~--~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~L 355 (594)
|. +++ +.........++++++.+.. .|..+ ...|+||||+|.+. ....+.|
T Consensus 77 ~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~-~P~~g---k~KVIIIDEad~Ls-------------~~A~NAL 139 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQY-APTAG---KYKVYIIDEVHMLS-------------KSAFNAM 139 (709)
T ss_pred HHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHh-hhhhC---CcEEEEEECccccC-------------HHHHHHH
Confidence 11 110 00112234567888776543 22222 24599999999863 2345677
Q ss_pred HHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcC
Q 007661 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (594)
Q Consensus 356 l~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~ 435 (594)
|..|+.. ..++.+|.+|+.+..+.+.+++ |+ ..+.|..++.++....|+..+++... ..++..+..|++.+.
T Consensus 140 LKtLEEP--p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi---~id~eAL~~Ia~~A~ 211 (709)
T PRK08691 140 LKTLEEP--PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKI---AYEPPALQLLGRAAA 211 (709)
T ss_pred HHHHHhC--CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHhC
Confidence 7777743 3567888888888888888886 54 36888899999999999888776431 134446788888886
Q ss_pred CCCHHHHHHHHHHHHHH
Q 007661 436 NYSGAELEGVAKSAVSF 452 (594)
Q Consensus 436 g~sg~dl~~l~~~A~~~ 452 (594)
| +.+++.+++..+..+
T Consensus 212 G-slRdAlnLLDqaia~ 227 (709)
T PRK08691 212 G-SMRDALSLLDQAIAL 227 (709)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 5 889999988877754
No 106
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.44 E-value=6.1e-12 Score=135.16 Aligned_cols=190 Identities=23% Similarity=0.320 Sum_probs=125.1
Q ss_pred cccccCCccCcHHHHHH--HHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 214 FNLQSLGIGGLSAEFAD--IFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 214 ~~~~~~~igGl~~~~~~--i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
-+|++ +.|.+..+.. .+++++... .+.+++|+||||||||++|+++++.+. ..+..+++..
T Consensus 9 ~~l~d--~vGq~~~v~~~~~L~~~i~~~-------------~~~~ilL~GppGtGKTtLA~~ia~~~~-~~~~~l~a~~- 71 (413)
T PRK13342 9 KTLDE--VVGQEHLLGPGKPLRRMIEAG-------------RLSSMILWGPPGTGKTTLARIIAGATD-APFEALSAVT- 71 (413)
T ss_pred CCHHH--hcCcHHHhCcchHHHHHHHcC-------------CCceEEEECCCCCCHHHHHHHHHHHhC-CCEEEEeccc-
Confidence 45777 8888877654 225555321 234799999999999999999999974 4555565542
Q ss_pred hhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEE
Q 007661 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLI 371 (594)
Q Consensus 292 ~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI 371 (594)
.....++++++.+..... .....+|||||+|.+.. ...+.|+..++. +.+++|
T Consensus 72 ------~~~~~ir~ii~~~~~~~~----~g~~~vL~IDEi~~l~~-------------~~q~~LL~~le~----~~iilI 124 (413)
T PRK13342 72 ------SGVKDLREVIEEARQRRS----AGRRTILFIDEIHRFNK-------------AQQDALLPHVED----GTITLI 124 (413)
T ss_pred ------ccHHHHHHHHHHHHHhhh----cCCceEEEEechhhhCH-------------HHHHHHHHHhhc----CcEEEE
Confidence 123456677777654221 11245999999998742 223445555542 467777
Q ss_pred EeeCC--cccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHH
Q 007661 372 GMTNR--KDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSA 449 (594)
Q Consensus 372 ~~tn~--~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A 449 (594)
++|+. ...+++++++ |+ ..+.++.|+.++..++|+..+..........++..++.+++.+.| ..+.+.++++.+
T Consensus 125 ~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~ 200 (413)
T PRK13342 125 GATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELA 200 (413)
T ss_pred EeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 77543 3468999998 65 579999999999999999877653211001234457778887754 667776777666
Q ss_pred HH
Q 007661 450 VS 451 (594)
Q Consensus 450 ~~ 451 (594)
..
T Consensus 201 ~~ 202 (413)
T PRK13342 201 AL 202 (413)
T ss_pred HH
Confidence 53
No 107
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=2.7e-12 Score=144.25 Aligned_cols=198 Identities=19% Similarity=0.248 Sum_probs=134.6
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCc------EEE
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEP------KIV 286 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~------~~v 286 (594)
..+|++ |.|.+..++.| +.++..- +.+..+||+||||||||++||++|+.+++... ..+
T Consensus 12 P~tFdd--IIGQe~Iv~~L-knaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 12 PATFEQ--MVGQSHVLHAL-TNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 367888 99999988877 6665431 22345799999999999999999999975311 000
Q ss_pred -ecchhhhc-------ccc---hhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHH
Q 007661 287 -NGPEVLSK-------FVG---ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (594)
Q Consensus 287 -~~~~l~~~-------~~g---~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~L 355 (594)
+|-.+... +-+ .....+|++.+.+... +..+ ...|+||||+|.|- ....+.|
T Consensus 77 ~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~-P~~g---k~KViIIDEAh~LT-------------~eAqNAL 139 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYR-PSRG---RFKVYLIDEVHMLS-------------RSSFNAL 139 (944)
T ss_pred hHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhh-hhcC---CcEEEEEechHhcC-------------HHHHHHH
Confidence 01111110 001 1234567776665432 2222 24599999999983 3456778
Q ss_pred HHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcC
Q 007661 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (594)
Q Consensus 356 l~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~ 435 (594)
|..|+. ...++++|++|+.+..|.+.+++ |. ..++|..++.++..+.|+..+.... ...++..+..|+..+.
T Consensus 140 LKtLEE--PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~Eg---I~~edeAL~lIA~~S~ 211 (944)
T PRK14949 140 LKTLEE--PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQ---LPFEAEALTLLAKAAN 211 (944)
T ss_pred HHHHhc--cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcC
Confidence 888774 34578888888888889999988 43 4799999999999999988776532 1234456788888887
Q ss_pred CCCHHHHHHHHHHHHH
Q 007661 436 NYSGAELEGVAKSAVS 451 (594)
Q Consensus 436 g~sg~dl~~l~~~A~~ 451 (594)
| +.+++.+++..+..
T Consensus 212 G-d~R~ALnLLdQala 226 (944)
T PRK14949 212 G-SMRDALSLTDQAIA 226 (944)
T ss_pred C-CHHHHHHHHHHHHH
Confidence 6 77888888877663
No 108
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.44 E-value=1.1e-13 Score=146.38 Aligned_cols=96 Identities=20% Similarity=0.245 Sum_probs=87.6
Q ss_pred CccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc---
Q 007661 494 TDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES--- 570 (594)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~--- 570 (594)
.+++.|.+++|+......+.+.+.++..+++.+...+..|+.|+|||||||||||++|+++|++++.+|+.+.++++
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k 218 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQK 218 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHH
Confidence 45677888999998888899999999999999999999999999999999999999999999999999999999987
Q ss_pred ccccccchhhhHHHHHHHhhhcC
Q 007661 571 MIGLHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 571 ~vG~sE~~~~~~ir~~F~~A~~~ 593 (594)
|+|++++. ++++|+.|+..
T Consensus 219 ~~ge~~~~----lr~lf~~A~~~ 237 (398)
T PTZ00454 219 YLGEGPRM----VRDVFRLAREN 237 (398)
T ss_pred hcchhHHH----HHHHHHHHHhc
Confidence 49999886 99999999764
No 109
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.43 E-value=3e-12 Score=146.25 Aligned_cols=229 Identities=20% Similarity=0.246 Sum_probs=144.4
Q ss_pred CccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhh-------
Q 007661 220 GIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL------- 292 (594)
Q Consensus 220 ~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~------- 292 (594)
++.|+++.+++|+ +.+..... .+-.+...++|+||||||||++++.+|+.++ ..+..++.....
T Consensus 323 ~~~g~~~vK~~i~-~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~-~~~~~i~~~~~~d~~~i~g 393 (784)
T PRK10787 323 DHYGLERVKDRIL-EYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATG-RKYVRMALGGVRDEAEIRG 393 (784)
T ss_pred hccCHHHHHHHHH-HHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhC-CCEEEEEcCCCCCHHHhcc
Confidence 4889999999884 44432211 1112345699999999999999999999985 455555543322
Q ss_pred --hcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCc--------
Q 007661 293 --SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV-------- 362 (594)
Q Consensus 293 --~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~-------- 362 (594)
..|.|.....+...+..+.... .||+|||+|.+.+...+ ...+.|+..+|.-
T Consensus 394 ~~~~~~g~~~G~~~~~l~~~~~~~---------~villDEidk~~~~~~g---------~~~~aLlevld~~~~~~~~d~ 455 (784)
T PRK10787 394 HRRTYIGSMPGKLIQKMAKVGVKN---------PLFLLDEIDKMSSDMRG---------DPASALLEVLDPEQNVAFSDH 455 (784)
T ss_pred chhccCCCCCcHHHHHHHhcCCCC---------CEEEEEChhhcccccCC---------CHHHHHHHHhccccEEEEecc
Confidence 2466666666655555443221 28999999998643211 1234566666531
Q ss_pred -----cccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHh--ccccCCC-----CCCcccHHHH
Q 007661 363 -----ESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTN--KMKENSF-----LAPDVNLQEL 430 (594)
Q Consensus 363 -----~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~--~~~~~~~-----l~~~~~l~~l 430 (594)
...+++++|+|+|..+ |+++|++ |+. .|.+..++.++..+|.+.++. ....+.. ..++..+..+
T Consensus 456 ~~~~~~dls~v~~i~TaN~~~-i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~i 531 (784)
T PRK10787 456 YLEVDYDLSDVMFVATSNSMN-IPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGI 531 (784)
T ss_pred cccccccCCceEEEEcCCCCC-CCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHH
Confidence 1346899999999874 9999998 886 799999999999999998873 2221110 1122234555
Q ss_pred HHH-cCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHh
Q 007661 431 AAR-TKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYE 485 (594)
Q Consensus 431 a~~-t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~ 485 (594)
++. +..+-.|.|+.++...+...+.+.+.... .....|+.+++.+.+..
T Consensus 532 i~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~------~~~v~v~~~~~~~~lg~ 581 (784)
T PRK10787 532 IRYYTREAGVRSLEREISKLCRKAVKQLLLDKS------LKHIEINGDNLHDYLGV 581 (784)
T ss_pred HHhCCcccCCcHHHHHHHHHHHHHHHHHHhcCC------CceeeecHHHHHHHhCC
Confidence 542 33444577777666665555554332111 12356788888777763
No 110
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=9.6e-14 Score=152.91 Aligned_cols=92 Identities=20% Similarity=0.258 Sum_probs=76.0
Q ss_pred ccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc---cc
Q 007661 497 LERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM---IG 573 (594)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~---vG 573 (594)
+...+.-|..+.++.+.+++.- ++.++++.+.+.++|+|+||+||||||||+||||+|.|+|+||+++.|+|-. +|
T Consensus 308 V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g 386 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVG 386 (774)
T ss_pred CccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcc
Confidence 3344455666666666666543 5678889999999999999999999999999999999999999999999984 77
Q ss_pred cccchhhhHHHHHHHhhhcC
Q 007661 574 LHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 574 ~sE~~~~~~ir~~F~~A~~~ 593 (594)
..-.. +|++|..||+-
T Consensus 387 ~~asr----vr~lf~~ar~~ 402 (774)
T KOG0731|consen 387 VGASR----VRDLFPLARKN 402 (774)
T ss_pred cchHH----HHHHHHHhhcc
Confidence 66554 99999999973
No 111
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=5.7e-14 Score=133.48 Aligned_cols=88 Identities=20% Similarity=0.234 Sum_probs=78.7
Q ss_pred ccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc---ccccccc
Q 007661 501 RLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES---MIGLHES 577 (594)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~---~vG~sE~ 577 (594)
.++|+..--..++++++.+.++++.|...+...|+|+|||||||||||+||+++|....+.||+|.|+|+ |+||.-+
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsr 227 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSR 227 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHH
Confidence 3556665555677888889999999999999999999999999999999999999999999999999999 5998777
Q ss_pred hhhhHHHHHHHhhhc
Q 007661 578 TKCAQIVKVSECQFS 592 (594)
Q Consensus 578 ~~~~~ir~~F~~A~~ 592 (594)
- +|++|-.||.
T Consensus 228 m----vrelfvmare 238 (404)
T KOG0728|consen 228 M----VRELFVMARE 238 (404)
T ss_pred H----HHHHHHHHHh
Confidence 5 9999999985
No 112
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.43 E-value=8.4e-12 Score=123.23 Aligned_cols=205 Identities=15% Similarity=0.173 Sum_probs=126.2
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEecc
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGP 289 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~~ 289 (594)
+..+|++.-.|+-+..+..+ +.+.. +.....+++|+||+|||||++|+++++++ .+..+.++++.
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l-~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARL-RELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred ChhhhcccccCCcHHHHHHH-HHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 55778886334444433333 54332 23455689999999999999999999886 34566777776
Q ss_pred hhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEE
Q 007661 290 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVL 369 (594)
Q Consensus 290 ~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~ 369 (594)
++... +.... ...+|+|||+|.+.+ .... .|+..++.....+..+
T Consensus 80 ~~~~~------------~~~~~----------~~~~liiDdi~~l~~----------~~~~---~L~~~~~~~~~~~~~~ 124 (227)
T PRK08903 80 SPLLA------------FDFDP----------EAELYAVDDVERLDD----------AQQI---ALFNLFNRVRAHGQGA 124 (227)
T ss_pred HhHHH------------Hhhcc----------cCCEEEEeChhhcCc----------hHHH---HHHHHHHHHHHcCCcE
Confidence 54321 11111 134999999998731 1122 2333333333334443
Q ss_pred EEEeeCC-cc--cccHHhhCCCCc--cceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHH
Q 007661 370 LIGMTNR-KD--MLDEALLRPGRL--EVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEG 444 (594)
Q Consensus 370 vI~~tn~-~~--~ld~al~r~gRf--~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~ 444 (594)
+|.+++. +. .+.+.|.+ || ...+++++|+.+++..+++.+..... .-.++..+..|+....| +.+++..
T Consensus 125 vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~---v~l~~~al~~L~~~~~g-n~~~l~~ 198 (227)
T PRK08903 125 LLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERG---LQLADEVPDYLLTHFRR-DMPSLMA 198 (227)
T ss_pred EEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhccC-CHHHHHH
Confidence 4444443 32 24577776 55 56999999999999999987665432 12344567888886554 8889988
Q ss_pred HHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHH
Q 007661 445 VAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALY 484 (594)
Q Consensus 445 l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~ 484 (594)
+++.-..++... ...||...+.+++.
T Consensus 199 ~l~~l~~~~~~~--------------~~~i~~~~~~~~l~ 224 (227)
T PRK08903 199 LLDALDRYSLEQ--------------KRPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHHHHHh--------------CCCCCHHHHHHHHh
Confidence 888765555432 24567777666654
No 113
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.42 E-value=1.1e-11 Score=130.75 Aligned_cols=193 Identities=20% Similarity=0.280 Sum_probs=132.6
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCC----------
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME---------- 282 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~---------- 282 (594)
...|++ |.|.+..++.+ +.++... +.+..+|||||||+|||++|+++++.+.+..
T Consensus 10 p~~~~~--iig~~~~~~~l-~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 10 PQTFED--VIGQEHIVQTL-KNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred CCcHhh--ccCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 456888 89999999888 5655421 2345789999999999999999999985321
Q ss_pred -------------cEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHH
Q 007661 283 -------------PKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHD 349 (594)
Q Consensus 283 -------------~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~ 349 (594)
+..+++. .......++++++.+... |..+ ...|++|||+|.+. .
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~-p~~~---~~~vviidea~~l~-------------~ 131 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAA------SNNGVDDIREILDNVKYA-PSSG---KYKVYIIDEVHMLS-------------K 131 (355)
T ss_pred HHHHHHhcCCCCCEEEeecc------ccCCHHHHHHHHHHHhcC-cccC---CceEEEEeChhhcC-------------H
Confidence 1111111 012344577888776543 3222 34599999999873 2
Q ss_pred HHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHH
Q 007661 350 SIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQE 429 (594)
Q Consensus 350 ~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~ 429 (594)
...+.|+..++.. ..++++|.+|+.++.+.+.+++ |+ ..++++.|+.++..++++.++++... ..++..+..
T Consensus 132 ~~~~~Ll~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~---~i~~~a~~~ 203 (355)
T TIGR02397 132 SAFNALLKTLEEP--PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGI---KIEDEALEL 203 (355)
T ss_pred HHHHHHHHHHhCC--ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHH
Confidence 2456677777642 3467778888888888899988 55 37899999999999999988775431 123456777
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHH
Q 007661 430 LAARTKNYSGAELEGVAKSAVSF 452 (594)
Q Consensus 430 la~~t~g~sg~dl~~l~~~A~~~ 452 (594)
++..+.| +.+.+.+.+..+..+
T Consensus 204 l~~~~~g-~~~~a~~~lekl~~~ 225 (355)
T TIGR02397 204 IARAADG-SLRDALSLLDQLISF 225 (355)
T ss_pred HHHHcCC-ChHHHHHHHHHHHhh
Confidence 8887765 666666666665543
No 114
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=8.5e-12 Score=137.95 Aligned_cols=200 Identities=17% Similarity=0.234 Sum_probs=134.6
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcE--------
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK-------- 284 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~-------- 284 (594)
.-+|++ |.|.+..++.| +.++..- +.+..+||+||+|||||++|+++|+.+++...-
T Consensus 12 P~~f~d--viGQe~vv~~L-~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 12 PRSFSE--MVGQEHVVQAL-TNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 357888 88988887777 6665432 223468999999999999999999998753110
Q ss_pred ----EEecchhhh----------cccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHH
Q 007661 285 ----IVNGPEVLS----------KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDS 350 (594)
Q Consensus 285 ----~v~~~~l~~----------~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~ 350 (594)
.-+|..+.. .........++++.+.+.. .|..+ ...|++|||+|.|- ..
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~-~p~~g---~~KV~IIDEvh~Ls-------------~~ 139 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVY-KPVQG---RFKVFMIDEVHMLT-------------NT 139 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHh-CcccC---CceEEEEEChhhCC-------------HH
Confidence 001111111 0011223457777766543 33322 24599999999984 22
Q ss_pred HHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHH
Q 007661 351 IVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQEL 430 (594)
Q Consensus 351 ~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~l 430 (594)
..+.|+..++. ....+.+|.+|+.+..+.+.+++++ ..++|..++.++..+.|+..+++... ..++..+..|
T Consensus 140 a~NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlSRc---~~~~f~~Ls~eei~~~L~~i~~~egi---~ie~~AL~~L 211 (618)
T PRK14951 140 AFNAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLSRC---LQFNLRPMAPETVLEHLTQVLAAENV---PAEPQALRLL 211 (618)
T ss_pred HHHHHHHhccc--CCCCeEEEEEECCchhhhHHHHHhc---eeeecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHH
Confidence 45667777764 3357778888888888888888844 37999999999999999877765431 2344567888
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHH
Q 007661 431 AARTKNYSGAELEGVAKSAVSFA 453 (594)
Q Consensus 431 a~~t~g~sg~dl~~l~~~A~~~a 453 (594)
++.+.| +.+++.+++..+..+.
T Consensus 212 a~~s~G-slR~al~lLdq~ia~~ 233 (618)
T PRK14951 212 ARAARG-SMRDALSLTDQAIAFG 233 (618)
T ss_pred HHHcCC-CHHHHHHHHHHHHHhc
Confidence 888876 8888888887666543
No 115
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=1.2e-11 Score=137.02 Aligned_cols=200 Identities=19% Similarity=0.251 Sum_probs=137.0
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcE------EE
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK------IV 286 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~------~v 286 (594)
+.+|++ +.|.+..++.+ +.++..- +.+..+|||||+|||||++|+.+|+.+.+.... .+
T Consensus 12 P~~f~~--viGq~~v~~~L-~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 12 PQTFED--VVGQEHITKTL-KNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred CCcHHh--ccCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 457888 99999988877 6665431 234568999999999999999999998643210 00
Q ss_pred -ecchhhh----------cccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHH
Q 007661 287 -NGPEVLS----------KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (594)
Q Consensus 287 -~~~~l~~----------~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~L 355 (594)
+|..+.. ...+.....++++.+.+.. .|..+ ...|+||||+|.|. ....+.|
T Consensus 77 ~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~-~p~~~---~~kViIIDE~~~Lt-------------~~a~naL 139 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKY-APSEA---KYKVYIIDEVHMLS-------------TGAFNAL 139 (559)
T ss_pred HHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhh-CcccC---CeEEEEEECcccCC-------------HHHHHHH
Confidence 1111110 1112344567888777654 33322 34599999999873 2345677
Q ss_pred HHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcC
Q 007661 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (594)
Q Consensus 356 l~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~ 435 (594)
+..++.. ..++++|.+|+.++.|.+.+++ |.. .++|..|+.++..+.|+..+++... ..++..+..++..+.
T Consensus 140 LKtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi---~i~~~al~~ia~~s~ 211 (559)
T PRK05563 140 LKTLEEP--PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGI---EYEDEALRLIARAAE 211 (559)
T ss_pred HHHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcC
Confidence 7777643 4577788788888999999988 543 6889999999999999888765431 123445778888887
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 007661 436 NYSGAELEGVAKSAVSFA 453 (594)
Q Consensus 436 g~sg~dl~~l~~~A~~~a 453 (594)
| +.+++.+++..+..+.
T Consensus 212 G-~~R~al~~Ldq~~~~~ 228 (559)
T PRK05563 212 G-GMRDALSILDQAISFG 228 (559)
T ss_pred C-CHHHHHHHHHHHHHhc
Confidence 6 7888888887776543
No 116
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.41 E-value=4.2e-12 Score=126.85 Aligned_cols=194 Identities=25% Similarity=0.359 Sum_probs=126.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhh
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAI 334 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l 334 (594)
..++||||||||||+|||.|+.......+.+|..+.. ......+|.+|+.+++.....+ ...|||||||+.+
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt-----~a~t~dvR~ife~aq~~~~l~k---rkTilFiDEiHRF 234 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT-----NAKTNDVRDIFEQAQNEKSLTK---RKTILFIDEIHRF 234 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc-----ccchHHHHHHHHHHHHHHhhhc---ceeEEEeHHhhhh
Confidence 3699999999999999999999875554555544322 3345679999999988653322 2459999999998
Q ss_pred hccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCC-c-ccccHHhhCCCCccceeecCCCCHHHHHHHHHHHH
Q 007661 335 CKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNR-K-DMLDEALLRPGRLEVQVEISLPDENGRLQILQIHT 412 (594)
Q Consensus 335 ~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~-~-~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~ 412 (594)
.+.. ...||-.. ..+.+.+||+|.. | -.+..+|++++| .+.+.....+...-||..-.
T Consensus 235 NksQ-------------QD~fLP~V----E~G~I~lIGATTENPSFqln~aLlSRC~---VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 235 NKSQ-------------QDTFLPHV----ENGDITLIGATTENPSFQLNAALLSRCR---VFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred hhhh-------------hhccccee----ccCceEEEecccCCCccchhHHHHhccc---eeEeccCCHHHHHHHHHHHH
Confidence 5321 12344432 2467899998843 3 348899998666 67777888888888887633
Q ss_pred hccccC----------CCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHH
Q 007661 413 NKMKEN----------SFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHA 482 (594)
Q Consensus 413 ~~~~~~----------~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~a 482 (594)
.-+... ....++.-++.++..++|-.-+-|..|--.+.+.+.+... .....++.+|+.+.
T Consensus 295 a~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g~----------~~~~~lSidDvke~ 364 (554)
T KOG2028|consen 295 ASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSGQ----------SSRVLLSIDDVKEG 364 (554)
T ss_pred HhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCC----------cccceecHHHHHHH
Confidence 311110 0012344578899999986666665443333333333211 13456788888888
Q ss_pred HHhc
Q 007661 483 LYEI 486 (594)
Q Consensus 483 l~~~ 486 (594)
++.-
T Consensus 365 lq~s 368 (554)
T KOG2028|consen 365 LQRS 368 (554)
T ss_pred Hhhc
Confidence 7754
No 117
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.41 E-value=1.3e-11 Score=124.42 Aligned_cols=142 Identities=25% Similarity=0.361 Sum_probs=89.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecc------hhhhcccchhHHHHHHHHHH-HHh----------hccc
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGP------EVLSKFVGETEKNIRDLFAD-AEN----------DQRT 316 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~------~l~~~~~g~~~~~i~~lf~~-a~~----------~~~~ 316 (594)
..++||+||||||||++|+++|+.+ +.+++.++|. ++++.+.+.....+..-|.. ... ..|.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~l-g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKR-DRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh-CCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 4579999999999999999999987 5667777664 33333332221111111100 000 0000
Q ss_pred cCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCc--------------cccCcEEEEEeeCCcc----
Q 007661 317 RGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV--------------ESLNNVLLIGMTNRKD---- 378 (594)
Q Consensus 317 ~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~--------------~~~~~v~vI~~tn~~~---- 378 (594)
..+.....+|+|||++.+-+ .+.+.|+..|+.- ....++.||+|+|+..
T Consensus 100 ~~A~~~g~~lllDEi~r~~~-------------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 100 TLAVREGFTLVYDEFTRSKP-------------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HHHHHcCCEEEEcchhhCCH-------------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 00001134999999998642 2444455555421 1224678999999863
Q ss_pred -cccHHhhCCCCccceeecCCCCHHHHHHHHHHHH
Q 007661 379 -MLDEALLRPGRLEVQVEISLPDENGRLQILQIHT 412 (594)
Q Consensus 379 -~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~ 412 (594)
.+++++.+ || ..+.++.|+.++-.+|++.++
T Consensus 167 ~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 167 HETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 46889998 87 479999999999999999875
No 118
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=1.7e-11 Score=133.59 Aligned_cols=191 Identities=19% Similarity=0.208 Sum_probs=130.7
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCC----------
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME---------- 282 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~---------- 282 (594)
..+|++ |.|.+..++.| +.++... +.+..+|||||||||||++|+++|+.+.+..
T Consensus 10 P~~~~d--vvGq~~v~~~L-~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 10 PITFDE--VVGQEHVKEVL-LAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred CCCHHH--hcChHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 457888 99999988777 6665431 2344579999999999999999999985421
Q ss_pred ------------cEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHH
Q 007661 283 ------------PKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDS 350 (594)
Q Consensus 283 ------------~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~ 350 (594)
+..++.. .......++++.+.+.. .|.. ..+.|++|||+|.+. ..
T Consensus 75 sc~~i~~~~h~dv~el~~~------~~~~vd~iR~l~~~~~~-~p~~---~~~kVVIIDEad~ls-------------~~ 131 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAA------SNNSVEDVRDLREKVLL-APLR---GGRKVYILDEAHMMS-------------KS 131 (504)
T ss_pred hhHHHhcCCCCceEEeccc------ccCCHHHHHHHHHHHhh-cccc---CCCeEEEEECccccC-------------HH
Confidence 1112211 11223456666554443 2222 235699999999762 33
Q ss_pred HHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHH
Q 007661 351 IVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQEL 430 (594)
Q Consensus 351 ~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~l 430 (594)
.++.|+..++.. ..++++|.+++.++.+.+.+++ |.. .++|..|+.++..+.|+..+++... -.++..+..+
T Consensus 132 a~naLLk~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi---~i~~~Al~~i 203 (504)
T PRK14963 132 AFNALLKTLEEP--PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGR---EAEPEALQLV 203 (504)
T ss_pred HHHHHHHHHHhC--CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHH
Confidence 466777777642 3467788888888899999988 433 7999999999999999988765431 1244567888
Q ss_pred HHHcCCCCHHHHHHHHHHHH
Q 007661 431 AARTKNYSGAELEGVAKSAV 450 (594)
Q Consensus 431 a~~t~g~sg~dl~~l~~~A~ 450 (594)
+..+.| ..+++.++++.+.
T Consensus 204 a~~s~G-dlR~aln~Lekl~ 222 (504)
T PRK14963 204 ARLADG-AMRDAESLLERLL 222 (504)
T ss_pred HHHcCC-CHHHHHHHHHHHH
Confidence 888876 6677777776654
No 119
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.40 E-value=9.6e-12 Score=132.11 Aligned_cols=230 Identities=20% Similarity=0.279 Sum_probs=139.1
Q ss_pred ccCcHHHHHHHHHHHHHcc---CCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh-ccc
Q 007661 221 IGGLSAEFADIFRRAFASR---VFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS-KFV 296 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~---~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~-~~~ 296 (594)
|.|++..++.+ ..++... +.+......-...+..++||+||||||||++|+++|+.+ ..++..+++..+.. .|+
T Consensus 73 ViGq~~ak~~l-~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l-~~pf~~id~~~l~~~gyv 150 (412)
T PRK05342 73 VIGQERAKKVL-SVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL-DVPFAIADATTLTEAGYV 150 (412)
T ss_pred eeChHHHHHHH-HHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh-CCCceecchhhcccCCcc
Confidence 89999998877 4444321 111100000001245689999999999999999999998 46677888887753 688
Q ss_pred chhHHH-HHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCch-HHHHHHHHHHhhcCcc-----------
Q 007661 297 GETEKN-IRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGV-HDSIVNQLLTKIDGVE----------- 363 (594)
Q Consensus 297 g~~~~~-i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~-~~~~v~~Ll~~ld~~~----------- 363 (594)
|+.... +..+++.+.... ....+.||||||||.+.++++.......+ ...+.+.||..|++-.
T Consensus 151 G~d~e~~l~~l~~~~~~~~----~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~ 226 (412)
T PRK05342 151 GEDVENILLKLLQAADYDV----EKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 226 (412)
T ss_pred cchHHHHHHHHHHhccccH----HHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCc
Confidence 875443 455544321100 00124599999999998764322111111 2346778888887531
Q ss_pred ccCcEEEEEeeCCcc----------------------------------------------------cccHHhhCCCCcc
Q 007661 364 SLNNVLLIGMTNRKD----------------------------------------------------MLDEALLRPGRLE 391 (594)
Q Consensus 364 ~~~~v~vI~~tn~~~----------------------------------------------------~ld~al~r~gRf~ 391 (594)
...+.++|.|+|-.. .+.|.+. ||++
T Consensus 227 ~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld 304 (412)
T PRK05342 227 PQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLP 304 (412)
T ss_pred CCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCC
Confidence 111344555544300 0234443 4999
Q ss_pred ceeecCCCCHHHHHHHHHH----HHhcccc----CC--CCCCcccHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHhcc
Q 007661 392 VQVEISLPDENGRLQILQI----HTNKMKE----NS--FLAPDVNLQELAAR--TKNYSGAELEGVAKSAVSFALNRQL 458 (594)
Q Consensus 392 ~~i~i~~P~~~~r~~IL~~----~~~~~~~----~~--~l~~~~~l~~la~~--t~g~sg~dl~~l~~~A~~~a~~r~~ 458 (594)
..+.|.+.+++...+|+.. .++++.. .+ ...++..++.|++. ..++-.+.|+.+++......+.+..
T Consensus 305 ~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p 383 (412)
T PRK05342 305 VVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELP 383 (412)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhcc
Confidence 9999999999999999973 3332211 00 01233456777775 4456678888888888777765543
No 120
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.40 E-value=1.3e-11 Score=139.54 Aligned_cols=192 Identities=21% Similarity=0.298 Sum_probs=124.0
Q ss_pred ccccccCCccCcHHHHHH--HHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecch
Q 007661 213 EFNLQSLGIGGLSAEFAD--IFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 290 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~--i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~ 290 (594)
.-+|++ +.|.+..+.+ .+++++.. ....+++||||||||||++|+++++.+. ..+..+++..
T Consensus 24 P~tldd--~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~-~~f~~lna~~ 87 (725)
T PRK13341 24 PRTLEE--FVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTR-AHFSSLNAVL 87 (725)
T ss_pred CCcHHH--hcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhc-Ccceeehhhh
Confidence 356787 8898887752 33555542 2234799999999999999999999875 4445555532
Q ss_pred hhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEE
Q 007661 291 VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLL 370 (594)
Q Consensus 291 l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~v 370 (594)
.....+++.++.+....+.. ....+|||||+|.+.. ...+.|+..++. +.+++
T Consensus 88 -------~~i~dir~~i~~a~~~l~~~---~~~~IL~IDEIh~Ln~-------------~qQdaLL~~lE~----g~IiL 140 (725)
T PRK13341 88 -------AGVKDLRAEVDRAKERLERH---GKRTILFIDEVHRFNK-------------AQQDALLPWVEN----GTITL 140 (725)
T ss_pred -------hhhHHHHHHHHHHHHHhhhc---CCceEEEEeChhhCCH-------------HHHHHHHHHhcC----ceEEE
Confidence 11123455555543221111 1245999999998742 122345554442 56777
Q ss_pred EEeeCC--cccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccc----cCCCCCCcccHHHHHHHcCCCCHHHHHH
Q 007661 371 IGMTNR--KDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMK----ENSFLAPDVNLQELAARTKNYSGAELEG 444 (594)
Q Consensus 371 I~~tn~--~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~----~~~~l~~~~~l~~la~~t~g~sg~dl~~ 444 (594)
|++|+. ...++++++++++ .+++++++.+++..|++..+.... ......++..++.|++...| ..+++.+
T Consensus 141 I~aTTenp~~~l~~aL~SR~~---v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln 216 (725)
T PRK13341 141 IGATTENPYFEVNKALVSRSR---LFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLN 216 (725)
T ss_pred EEecCCChHhhhhhHhhcccc---ceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHH
Confidence 877643 3458899988443 689999999999999998876321 11112344457888888754 6788888
Q ss_pred HHHHHHH
Q 007661 445 VAKSAVS 451 (594)
Q Consensus 445 l~~~A~~ 451 (594)
+++.|..
T Consensus 217 ~Le~a~~ 223 (725)
T PRK13341 217 ALELAVE 223 (725)
T ss_pred HHHHHHH
Confidence 8887664
No 121
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.40 E-value=8.8e-12 Score=122.63 Aligned_cols=197 Identities=19% Similarity=0.204 Sum_probs=124.7
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcE-----EEe
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK-----IVN 287 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~-----~v~ 287 (594)
.-+|++ +.|.+.+++.+ ..++.... . .++|||||||||||+.|+++|+++++.... ..+
T Consensus 32 Pkt~de--~~gQe~vV~~L-~~a~~~~~-l------------p~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln 95 (346)
T KOG0989|consen 32 PKTFDE--LAGQEHVVQVL-KNALLRRI-L------------PHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN 95 (346)
T ss_pred CCcHHh--hcchHHHHHHH-HHHHhhcC-C------------ceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc
Confidence 346888 99999998877 66665432 2 268999999999999999999999763221 224
Q ss_pred cchhhhcccchhHHHHHHHHHHHHhhcc-ccCCCCCc-EEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcccc
Q 007661 288 GPEVLSKFVGETEKNIRDLFADAENDQR-TRGDQSDL-HVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESL 365 (594)
Q Consensus 288 ~~~l~~~~~g~~~~~i~~lf~~a~~~~~-~~~~~~~~-~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~ 365 (594)
.++..+..+.. .++ +-|+......+ ..+..+.| .|++|||+|.+. ....+.|..-|+.. .
T Consensus 96 aSderGisvvr--~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-------------sdaq~aLrr~mE~~--s 157 (346)
T KOG0989|consen 96 ASDERGISVVR--EKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT-------------SDAQAALRRTMEDF--S 157 (346)
T ss_pred ccccccccchh--hhh-cCHHHHhhccccccCCCCCcceEEEEechhhhh-------------HHHHHHHHHHHhcc--c
Confidence 44433332111 111 12222222211 11222223 699999999985 33456677777753 3
Q ss_pred CcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHH
Q 007661 366 NNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGV 445 (594)
Q Consensus 366 ~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l 445 (594)
..+++|..||.++.|...+.+ |.. .+.|+....+.....|+.+..+... -.++..+..+++.++| +.++....
T Consensus 158 ~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v---~~d~~al~~I~~~S~G-dLR~Ait~ 230 (346)
T KOG0989|consen 158 RTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGV---DIDDDALKLIAKISDG-DLRRAITT 230 (346)
T ss_pred cceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCC-cHHHHHHH
Confidence 478888999999998888887 533 5667777777777777777665431 1234457788887776 44554444
Q ss_pred HHHHH
Q 007661 446 AKSAV 450 (594)
Q Consensus 446 ~~~A~ 450 (594)
++.+.
T Consensus 231 Lqsls 235 (346)
T KOG0989|consen 231 LQSLS 235 (346)
T ss_pred HHHhh
Confidence 44443
No 122
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=1.8e-11 Score=133.67 Aligned_cols=199 Identities=18% Similarity=0.243 Sum_probs=132.4
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcE------E-
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK------I- 285 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~------~- 285 (594)
..+|++ |.|.+..++.+ ..++... +.+..+||+||||||||++|+.+|+.+.+.... .
T Consensus 12 P~~f~d--iiGq~~~v~~L-~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 12 PQSFAE--VAGQQHALNSL-VHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred cCcHHH--hcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 357888 99999998887 5655432 233468999999999999999999988642110 0
Q ss_pred Eec--------chhhh--cccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHH
Q 007661 286 VNG--------PEVLS--KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (594)
Q Consensus 286 v~~--------~~l~~--~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~L 355 (594)
.+| +++.. .........++++.+.+... |..+ ...|+||||+|.+- ....+.|
T Consensus 77 ~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~-p~~g---~~kViIIDEa~~ls-------------~~a~naL 139 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYM-PSQG---RYKVYLIDEVHMLS-------------KQSFNAL 139 (546)
T ss_pred HHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhh-hhcC---CcEEEEEechhhcc-------------HHHHHHH
Confidence 000 01100 00001223566676665432 2222 34599999999874 2355677
Q ss_pred HHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcC
Q 007661 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (594)
Q Consensus 356 l~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~ 435 (594)
|..|+. ....+.+|++|+.+..+.+.+++++ ..++|..++.++..+.|+..+++... ..++..+..++..+.
T Consensus 140 LK~LEe--pp~~v~fIL~Ttd~~kil~tI~SRc---~~~~f~~Ls~~eI~~~L~~il~~egi---~~e~~Al~~Ia~~s~ 211 (546)
T PRK14957 140 LKTLEE--PPEYVKFILATTDYHKIPVTILSRC---IQLHLKHISQADIKDQLKIILAKENI---NSDEQSLEYIAYHAK 211 (546)
T ss_pred HHHHhc--CCCCceEEEEECChhhhhhhHHHhe---eeEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcC
Confidence 777774 3356777888888888888888844 38999999999988888877765431 234556778888886
Q ss_pred CCCHHHHHHHHHHHHHH
Q 007661 436 NYSGAELEGVAKSAVSF 452 (594)
Q Consensus 436 g~sg~dl~~l~~~A~~~ 452 (594)
| +.+++.+++..+..+
T Consensus 212 G-dlR~alnlLek~i~~ 227 (546)
T PRK14957 212 G-SLRDALSLLDQAISF 227 (546)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 5 778888888776654
No 123
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.5e-13 Score=141.30 Aligned_cols=92 Identities=18% Similarity=0.238 Sum_probs=78.0
Q ss_pred ccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc---ccc
Q 007661 497 LERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES---MIG 573 (594)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~---~vG 573 (594)
+...+..|.++.+..++++++.+ +-++.|.+.+.+-|+||||+||||||||+||+|+|-|++.||+...|||- |||
T Consensus 301 v~F~dVkG~DEAK~ELeEiVefL-kdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VG 379 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEEIVEFL-KDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVG 379 (752)
T ss_pred cccccccChHHHHHHHHHHHHHh-cCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhc
Confidence 33455667777777777776653 45677888899999999999999999999999999999999999999986 799
Q ss_pred cccchhhhHHHHHHHhhhcC
Q 007661 574 LHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 574 ~sE~~~~~~ir~~F~~A~~~ 593 (594)
..-+. ||++|+.|++.
T Consensus 380 vGArR----VRdLF~aAk~~ 395 (752)
T KOG0734|consen 380 VGARR----VRDLFAAAKAR 395 (752)
T ss_pred ccHHH----HHHHHHHHHhc
Confidence 88876 99999999874
No 124
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.39 E-value=3e-13 Score=146.08 Aligned_cols=95 Identities=21% Similarity=0.236 Sum_probs=83.8
Q ss_pred CccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCC----------EE
Q 007661 494 TDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFP----------FV 563 (594)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~----------fi 563 (594)
.+++.|..++|+......+.+.+.++..+.+.+...+..|+.|+|||||||||||++||++|++.+.+ |+
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl 255 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL 255 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence 45667778888888877888888888899999999999999999999999999999999999997654 88
Q ss_pred EEecccc---ccccccchhhhHHHHHHHhhhc
Q 007661 564 KIISAES---MIGLHESTKCAQIVKVSECQFS 592 (594)
Q Consensus 564 ~v~~~e~---~vG~sE~~~~~~ir~~F~~A~~ 592 (594)
.++++++ |+|++|++ +|.+|+.|+.
T Consensus 256 ~v~~~eLl~kyvGete~~----ir~iF~~Ar~ 283 (512)
T TIGR03689 256 NIKGPELLNKYVGETERQ----IRLIFQRARE 283 (512)
T ss_pred eccchhhcccccchHHHH----HHHHHHHHHH
Confidence 9999997 49999987 9999999975
No 125
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.3e-13 Score=131.81 Aligned_cols=89 Identities=19% Similarity=0.213 Sum_probs=75.3
Q ss_pred cccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc---cccccc
Q 007661 500 SRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES---MIGLHE 576 (594)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~---~vG~sE 576 (594)
.+++|+..--+.+.+.+..++.+.+.|...+.+||+|+|+|||||||||++|+|.|...+..|+++-||++ |+|+.-
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGA 250 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGA 250 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchH
Confidence 45666655444555666677788999999999999999999999999999999999999999999999999 499665
Q ss_pred chhhhHHHHHHHhhhc
Q 007661 577 STKCAQIVKVSECQFS 592 (594)
Q Consensus 577 ~~~~~~ir~~F~~A~~ 592 (594)
+= +|..|..|..
T Consensus 251 kL----VRDAFaLAKE 262 (424)
T KOG0652|consen 251 KL----VRDAFALAKE 262 (424)
T ss_pred HH----HHHHHHHhhc
Confidence 53 9999998863
No 126
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=1.7e-11 Score=134.00 Aligned_cols=198 Identities=19% Similarity=0.223 Sum_probs=132.4
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEE----Eec
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI----VNG 288 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~----v~~ 288 (594)
+.+|++ +.|.+..++.+ +.++..- +.+..+||+||+|+|||++|+++|+.+.+..... -.|
T Consensus 12 P~~F~d--IIGQe~iv~~L-~~aI~~~------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 12 PHNFKQ--IIGQELIKKIL-VNAILNN------------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 456888 99999988877 6655321 2345799999999999999999999986532110 011
Q ss_pred c-----------hhhh--cccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHH
Q 007661 289 P-----------EVLS--KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (594)
Q Consensus 289 ~-----------~l~~--~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~L 355 (594)
. ++.. ......-..++++.+.+... |..+ ...|++|||+|.+- ....+.|
T Consensus 77 ~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~-P~~~---~~KVIIIDEad~Lt-------------~~A~NaL 139 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYL-PTTF---KYKVYIIDEAHMLS-------------TSAWNAL 139 (605)
T ss_pred HHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhc-hhhC---CcEEEEEechHhCC-------------HHHHHHH
Confidence 1 1110 00012234577777766543 3322 24599999999873 1234667
Q ss_pred HHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcC
Q 007661 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (594)
Q Consensus 356 l~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~ 435 (594)
+..|+. ....+++|.+|+.++.|.+.+++ |+. .++|..|+.++....|+..+++... -.++..+..++..+.
T Consensus 140 LKtLEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi---~Is~eal~~La~lS~ 211 (605)
T PRK05896 140 LKTLEE--PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKI---KIEDNAIDKIADLAD 211 (605)
T ss_pred HHHHHh--CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcC
Confidence 777774 33478888888889999999988 543 7899999999999998887765321 123445778888887
Q ss_pred CCCHHHHHHHHHHHHH
Q 007661 436 NYSGAELEGVAKSAVS 451 (594)
Q Consensus 436 g~sg~dl~~l~~~A~~ 451 (594)
| +.+++.+++..+..
T Consensus 212 G-dlR~AlnlLekL~~ 226 (605)
T PRK05896 212 G-SLRDGLSILDQLST 226 (605)
T ss_pred C-cHHHHHHHHHHHHh
Confidence 6 67777777766543
No 127
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=2.4e-11 Score=133.90 Aligned_cols=199 Identities=15% Similarity=0.138 Sum_probs=132.3
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcE------E-
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK------I- 285 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~------~- 285 (594)
..+|++ |.|.+..++.| +.++..- +.+..+||+||+|||||++|+++|+.+++..-. .
T Consensus 9 P~~f~e--ivGq~~i~~~L-~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 9 PATFAE--VVGQEHVTEPL-SSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred CCcHHH--hcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 457888 99999988887 6666431 233457999999999999999999998642100 0
Q ss_pred Eecch----------hh--hcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHH
Q 007661 286 VNGPE----------VL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVN 353 (594)
Q Consensus 286 v~~~~----------l~--~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~ 353 (594)
-+|.. ++ +......-..++++.+.+.. .|..+ ...|+||||+|.+- ....+
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~-~P~~~---~~KVvIIDEah~Lt-------------~~A~N 136 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFY-APAQS---RYRIFIVDEAHMVT-------------TAGFN 136 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHh-hhhcC---CceEEEEECCCcCC-------------HHHHH
Confidence 00111 10 00001123456666555533 23222 24599999999884 23566
Q ss_pred HHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHH
Q 007661 354 QLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAAR 433 (594)
Q Consensus 354 ~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~ 433 (594)
.||..|+. ...++++|.+|+.++.|.+.+++ | ...++|..++.++..+.|+.++++... ..++..+..++..
T Consensus 137 ALLK~LEE--pp~~~~fIL~tte~~kll~TI~S--R-c~~~~F~~l~~~~i~~~L~~i~~~egi---~i~~~al~~Ia~~ 208 (584)
T PRK14952 137 ALLKIVEE--PPEHLIFIFATTEPEKVLPTIRS--R-THHYPFRLLPPRTMRALIARICEQEGV---VVDDAVYPLVIRA 208 (584)
T ss_pred HHHHHHhc--CCCCeEEEEEeCChHhhHHHHHH--h-ceEEEeeCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHH
Confidence 77777774 34578888888888999999988 4 348999999999999888888776431 1234456666666
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q 007661 434 TKNYSGAELEGVAKSAVSF 452 (594)
Q Consensus 434 t~g~sg~dl~~l~~~A~~~ 452 (594)
+. -+.+++.+++..+..+
T Consensus 209 s~-GdlR~aln~Ldql~~~ 226 (584)
T PRK14952 209 GG-GSPRDTLSVLDQLLAG 226 (584)
T ss_pred cC-CCHHHHHHHHHHHHhc
Confidence 65 4778888887776654
No 128
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.37 E-value=4.9e-13 Score=142.11 Aligned_cols=94 Identities=19% Similarity=0.279 Sum_probs=84.4
Q ss_pred ccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc---
Q 007661 495 DDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM--- 571 (594)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~--- 571 (594)
+.+.|.+++|+.+....+.+.+.++..+.+.+...+..|+.|+|||||||||||++|+++|++++.+|+.+.+++++
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~ 205 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKF 205 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhh
Confidence 45566777888888778888888888899999999999999999999999999999999999999999999999984
Q ss_pred cccccchhhhHHHHHHHhhhc
Q 007661 572 IGLHESTKCAQIVKVSECQFS 592 (594)
Q Consensus 572 vG~sE~~~~~~ir~~F~~A~~ 592 (594)
+|++++. ++++|+.|+.
T Consensus 206 ~g~~~~~----i~~~f~~a~~ 222 (389)
T PRK03992 206 IGEGARL----VRELFELARE 222 (389)
T ss_pred ccchHHH----HHHHHHHHHh
Confidence 8998886 9999999975
No 129
>PRK06620 hypothetical protein; Validated
Probab=99.37 E-value=1.9e-11 Score=119.12 Aligned_cols=182 Identities=11% Similarity=0.181 Sum_probs=113.3
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCC-CceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecch
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKH-VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 290 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~-~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~ 290 (594)
+.++|++.-+|.-....-..++++... .+..+ ...++||||||||||++++++++..+. .++....
T Consensus 11 ~~~tfd~Fvvg~~N~~a~~~~~~~~~~----------~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~---~~~~~~~ 77 (214)
T PRK06620 11 SKYHPDEFIVSSSNDQAYNIIKNWQCG----------FGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNA---YIIKDIF 77 (214)
T ss_pred CCCCchhhEecccHHHHHHHHHHHHHc----------cccCCCcceEEEECCCCCCHHHHHHHHHhccCC---EEcchhh
Confidence 778899875666454433333443221 12223 257999999999999999999987632 2222111
Q ss_pred hhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEE
Q 007661 291 VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLL 370 (594)
Q Consensus 291 l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~v 370 (594)
. ..+.+ . ..++|+|||+|.+. +..+..+++ .+...++.++
T Consensus 78 ~-----------~~~~~----~---------~~d~lliDdi~~~~-------------~~~lf~l~N---~~~e~g~~il 117 (214)
T PRK06620 78 F-----------NEEIL----E---------KYNAFIIEDIENWQ-------------EPALLHIFN---IINEKQKYLL 117 (214)
T ss_pred h-----------chhHH----h---------cCCEEEEeccccch-------------HHHHHHHHH---HHHhcCCEEE
Confidence 0 00111 1 12499999999541 112223333 2333456778
Q ss_pred EEeeCCccc--ccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHH
Q 007661 371 IGMTNRKDM--LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKS 448 (594)
Q Consensus 371 I~~tn~~~~--ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~ 448 (594)
|+++..|.. + ++|+++......+++..|+.+.+.++++.+.+... ...++..++.|+.+..+ +.+.+.+++..
T Consensus 118 its~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~---l~l~~ev~~~L~~~~~~-d~r~l~~~l~~ 192 (214)
T PRK06620 118 LTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS---VTISRQIIDFLLVNLPR-EYSKIIEILEN 192 (214)
T ss_pred EEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHccC-CHHHHHHHHHH
Confidence 877766654 5 78888333345799999999999999998876432 12455568889988865 77888887776
Q ss_pred HHH
Q 007661 449 AVS 451 (594)
Q Consensus 449 A~~ 451 (594)
...
T Consensus 193 l~~ 195 (214)
T PRK06620 193 INY 195 (214)
T ss_pred HHH
Confidence 443
No 130
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=2.2e-11 Score=135.36 Aligned_cols=200 Identities=18% Similarity=0.221 Sum_probs=134.9
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcE------E-
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK------I- 285 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~------~- 285 (594)
..+|++ |.|.+..++.+ +.++..- +.+..+|||||+|+|||++|+++++.+.+.... .
T Consensus 12 P~~f~~--iiGq~~v~~~L-~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 12 PQTFSD--LTGQEHVSRTL-QNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred CCCHHH--ccCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 457888 99999888877 6665431 234568999999999999999999998643210 0
Q ss_pred Eecch--------hh--hcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHH
Q 007661 286 VNGPE--------VL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (594)
Q Consensus 286 v~~~~--------l~--~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~L 355 (594)
-.|.+ ++ +.........++++.+.+.. .|..+ ...|++|||+|.+- ....+.|
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~-~p~~~---~~KVvIIdev~~Lt-------------~~a~naL 139 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKY-LPSRS---RYKIFIIDEVHMLS-------------TNAFNAL 139 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHh-ccccC---CceEEEEEChhhCC-------------HHHHHHH
Confidence 00111 10 00011223467777766643 33322 34599999999874 2345677
Q ss_pred HHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcC
Q 007661 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (594)
Q Consensus 356 l~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~ 435 (594)
+..|+. ...++++|.+|+.++.|.+.+++ |. ..++|..++.++....|+..+++... -.++..+..++..+.
T Consensus 140 Lk~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi---~i~~~al~~la~~a~ 211 (576)
T PRK14965 140 LKTLEE--PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGI---SISDAALALVARKGD 211 (576)
T ss_pred HHHHHc--CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcC
Confidence 777774 34578888888999999999988 43 27889999999888888877665431 234556788888887
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 007661 436 NYSGAELEGVAKSAVSFA 453 (594)
Q Consensus 436 g~sg~dl~~l~~~A~~~a 453 (594)
| +.+++.+++..+..+.
T Consensus 212 G-~lr~al~~Ldqliay~ 228 (576)
T PRK14965 212 G-SMRDSLSTLDQVLAFC 228 (576)
T ss_pred C-CHHHHHHHHHHHHHhc
Confidence 6 6777777777666543
No 131
>PLN03025 replication factor C subunit; Provisional
Probab=99.36 E-value=3.3e-11 Score=125.12 Aligned_cols=190 Identities=17% Similarity=0.149 Sum_probs=119.8
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCC----CcEEEec
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGM----EPKIVNG 288 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~----~~~~v~~ 288 (594)
+-+|++ +.|.+..++.| +.++... ...++|||||||||||++|+++|+++.+. .+..++.
T Consensus 9 P~~l~~--~~g~~~~~~~L-~~~~~~~-------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 9 PTKLDD--IVGNEDAVSRL-QVIARDG-------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHhcC-------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 346777 88998888776 6554321 12369999999999999999999998432 2334444
Q ss_pred chhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcE
Q 007661 289 PEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNV 368 (594)
Q Consensus 289 ~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v 368 (594)
++..+ ...+++..+......... ......|++|||+|.+... ..+.|+..|+... ...
T Consensus 73 sd~~~------~~~vr~~i~~~~~~~~~~-~~~~~kviiiDE~d~lt~~-------------aq~aL~~~lE~~~--~~t 130 (319)
T PLN03025 73 SDDRG------IDVVRNKIKMFAQKKVTL-PPGRHKIVILDEADSMTSG-------------AQQALRRTMEIYS--NTT 130 (319)
T ss_pred ccccc------HHHHHHHHHHHHhccccC-CCCCeEEEEEechhhcCHH-------------HHHHHHHHHhccc--CCc
Confidence 43221 123444433322111000 0123569999999998421 2234555554322 345
Q ss_pred EEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHH
Q 007661 369 LLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAK 447 (594)
Q Consensus 369 ~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~ 447 (594)
.+|.++|.++.+.+++++ |. ..++|+.|+.++....|+..+++... ..++..+..++..+.| ..+.+.+.++
T Consensus 131 ~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi---~i~~~~l~~i~~~~~g-DlR~aln~Lq 202 (319)
T PLN03025 131 RFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKV---PYVPEGLEAIIFTADG-DMRQALNNLQ 202 (319)
T ss_pred eEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 577788888888899998 44 37899999999999999988765431 2345568888887765 4555555554
No 132
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=2.5e-11 Score=133.36 Aligned_cols=190 Identities=17% Similarity=0.181 Sum_probs=125.9
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCC----------
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME---------- 282 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~---------- 282 (594)
..+|++ |.|.+..++.| +.++..- +.+..+||+||||||||++|+.+|+.+.+..
T Consensus 12 P~sf~d--IiGQe~v~~~L-~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 12 PQTFAE--VAGQETVKAIL-SRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred CCCHHH--hcCCHHHHHHH-HHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 457888 88998877766 7666532 1234799999999999999999999986421
Q ss_pred -------------cEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHH
Q 007661 283 -------------PKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHD 349 (594)
Q Consensus 283 -------------~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~ 349 (594)
++.+++.. ...-..++.+.+.+.. .+.. +...||||||+|.+- .
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~-~p~~---g~~kVIIIDEad~Lt-------------~ 133 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGY-APME---GRYKVFIIDEAHMLT-------------R 133 (624)
T ss_pred HHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHh-hhhc---CCceEEEEEChHhCC-------------H
Confidence 11121110 1112344554433332 2221 224599999999984 2
Q ss_pred HHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHH
Q 007661 350 SIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQE 429 (594)
Q Consensus 350 ~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~ 429 (594)
...+.|+..|+. ...++++|++|+.++.+.+.+++ |+. .++|+.++.++..++|+..+++... ..++..++.
T Consensus 134 ~a~naLLk~LEE--P~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi---~id~eal~l 205 (624)
T PRK14959 134 EAFNALLKTLEE--PPARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGV---DYDPAAVRL 205 (624)
T ss_pred HHHHHHHHHhhc--cCCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHH
Confidence 345777777774 23578888889888888888887 543 7899999999999999877665331 134456778
Q ss_pred HHHHcCCCCHHHHHHHHHHH
Q 007661 430 LAARTKNYSGAELEGVAKSA 449 (594)
Q Consensus 430 la~~t~g~sg~dl~~l~~~A 449 (594)
+++.+.| +.+++.+++..+
T Consensus 206 IA~~s~G-dlR~Al~lLeql 224 (624)
T PRK14959 206 IARRAAG-SVRDSMSLLGQV 224 (624)
T ss_pred HHHHcCC-CHHHHHHHHHHH
Confidence 8887765 556666665544
No 133
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.36 E-value=3.2e-11 Score=126.01 Aligned_cols=209 Identities=20% Similarity=0.287 Sum_probs=135.5
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCC----CcEEEe
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGM----EPKIVN 287 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~----~~~~v~ 287 (594)
+.++|++.-+|.-......+....-..+ | .+-..++||||+|+|||+|+++++++.... .++++.
T Consensus 82 ~~ytFdnFv~g~~N~~A~aa~~~va~~~----------g-~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~ 150 (408)
T COG0593 82 PKYTFDNFVVGPSNRLAYAAAKAVAENP----------G-GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT 150 (408)
T ss_pred CCCchhheeeCCchHHHHHHHHHHHhcc----------C-CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc
Confidence 7899999855555544444422222222 1 133469999999999999999999987322 355667
Q ss_pred cchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCc
Q 007661 288 GPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNN 367 (594)
Q Consensus 288 ~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~ 367 (594)
..+++..++.....+-.+-|+.-. . .++++||||+.+..+... . ..+...++.+...++
T Consensus 151 se~f~~~~v~a~~~~~~~~Fk~~y-~---------~dlllIDDiq~l~gk~~~-------q----eefFh~FN~l~~~~k 209 (408)
T COG0593 151 SEDFTNDFVKALRDNEMEKFKEKY-S---------LDLLLIDDIQFLAGKERT-------Q----EEFFHTFNALLENGK 209 (408)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhh-c---------cCeeeechHhHhcCChhH-------H----HHHHHHHHHHHhcCC
Confidence 777776665544443334444444 2 349999999999754221 1 222222222333355
Q ss_pred EEEEEeeCCccc---ccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHH
Q 007661 368 VLLIGMTNRKDM---LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEG 444 (594)
Q Consensus 368 v~vI~~tn~~~~---ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~ 444 (594)
-+|+.+-..|.. +++.|+++.-....+++.+||.+.|..||+........ ..++.-+..++.+... +.++|+.
T Consensus 210 qIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~---~i~~ev~~~la~~~~~-nvReLeg 285 (408)
T COG0593 210 QIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGI---EIPDEVLEFLAKRLDR-NVRELEG 285 (408)
T ss_pred EEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHhhc-cHHHHHH
Confidence 555555555655 56899984445678999999999999999986654332 2355567788887763 7899998
Q ss_pred HHHHHHHHHHHh
Q 007661 445 VAKSAVSFALNR 456 (594)
Q Consensus 445 l~~~A~~~a~~r 456 (594)
.+.....++...
T Consensus 286 aL~~l~~~a~~~ 297 (408)
T COG0593 286 ALNRLDAFALFT 297 (408)
T ss_pred HHHHHHHHHHhc
Confidence 888777766543
No 134
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.9e-11 Score=135.27 Aligned_cols=161 Identities=21% Similarity=0.280 Sum_probs=107.8
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC---------CCCcEEEecchh
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---------GMEPKIVNGPEV 291 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~---------~~~~~~v~~~~l 291 (594)
||+.+++++.+++- + ..+..++-+|.|.||+|||.++.-+++... ...++.++...+
T Consensus 189 igr~deeirRvi~i-L-------------~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l 254 (898)
T KOG1051|consen 189 IGRHDEEIRRVIEI-L-------------SRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSL 254 (898)
T ss_pred cCCchHHHHHHHHH-H-------------hccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhc
Confidence 67767777666322 1 122335779999999999999999998762 123344444433
Q ss_pred h--hcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEE
Q 007661 292 L--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVL 369 (594)
Q Consensus 292 ~--~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~ 369 (594)
. .++.|+.+.+++.+.+++.... ...||||||++.+...... . + .-..++.|-.. ..++.+.
T Consensus 255 ~aGa~~rge~E~rlk~l~k~v~~~~-------~gvILfigelh~lvg~g~~--~--~-~~d~~nlLkp~----L~rg~l~ 318 (898)
T KOG1051|consen 255 VAGAKRRGEFEERLKELLKEVESGG-------GGVILFLGELHWLVGSGSN--Y--G-AIDAANLLKPL----LARGGLW 318 (898)
T ss_pred ccCcccchHHHHHHHHHHHHHhcCC-------CcEEEEecceeeeecCCCc--c--h-HHHHHHhhHHH----HhcCCeE
Confidence 3 3678999999999999988522 2459999999999855433 1 1 12222322222 2235699
Q ss_pred EEEeeCCccc-----ccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhc
Q 007661 370 LIGMTNRKDM-----LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNK 414 (594)
Q Consensus 370 vI~~tn~~~~-----ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~ 414 (594)
+||+|..-+. -||++-| ||+ .+.++.|+.+....||.....+
T Consensus 319 ~IGatT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 319 CIGATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred EEecccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhh
Confidence 9999985433 3899998 888 5679999988777777655444
No 135
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=2.2e-11 Score=133.87 Aligned_cols=198 Identities=20% Similarity=0.250 Sum_probs=134.3
Q ss_pred cccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEE-Ee---cc
Q 007661 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI-VN---GP 289 (594)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~-v~---~~ 289 (594)
-+|++ |.|.+..++.+ ..++... +.+..+||+||||+|||++|+.+|+.+++..... -. |.
T Consensus 13 ~~f~d--ivGq~~v~~~L-~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~ 77 (527)
T PRK14969 13 KSFSE--LVGQEHVVRAL-TNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCS 77 (527)
T ss_pred CcHHH--hcCcHHHHHHH-HHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 57888 99999988877 6665431 2334689999999999999999999986532110 00 10
Q ss_pred -----------hhh--hcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHH
Q 007661 290 -----------EVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLL 356 (594)
Q Consensus 290 -----------~l~--~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll 356 (594)
++. +.........++++.+.+.. .|..+ ...|+||||+|.+- ....+.||
T Consensus 78 ~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~-~p~~~---~~kVvIIDEad~ls-------------~~a~naLL 140 (527)
T PRK14969 78 ACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQY-APTRG---RFKVYIIDEVHMLS-------------KSAFNAML 140 (527)
T ss_pred HHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhh-CcccC---CceEEEEcCcccCC-------------HHHHHHHH
Confidence 110 00001234567788777643 33332 34599999999874 23456788
Q ss_pred HhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCC
Q 007661 357 TKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKN 436 (594)
Q Consensus 357 ~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g 436 (594)
..++. ...++.+|.+|+.++.+.+.+++ |. ..++|..++.++..+.|...+++... ..++..+..++..+.|
T Consensus 141 K~LEe--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi---~~~~~al~~la~~s~G 212 (527)
T PRK14969 141 KTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENI---PFDATALQLLARAAAG 212 (527)
T ss_pred HHHhC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCC
Confidence 88775 33577888888888888888887 43 47899999999998888877764321 1234457778888765
Q ss_pred CCHHHHHHHHHHHHHH
Q 007661 437 YSGAELEGVAKSAVSF 452 (594)
Q Consensus 437 ~sg~dl~~l~~~A~~~ 452 (594)
+.+++.+++..+..+
T Consensus 213 -slr~al~lldqai~~ 227 (527)
T PRK14969 213 -SMRDALSLLDQAIAY 227 (527)
T ss_pred -CHHHHHHHHHHHHHh
Confidence 778888888877654
No 136
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.36 E-value=5.3e-11 Score=115.43 Aligned_cols=165 Identities=16% Similarity=0.291 Sum_probs=114.1
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEE--Eecc
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI--VNGP 289 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~--v~~~ 289 (594)
..+.+++ +.|++.|++.+++. ....+ .-.+..++||||++|||||+++|++.++.....+.. |...
T Consensus 22 ~~~~l~~--L~Gie~Qk~~l~~N-t~~Fl---------~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~ 89 (249)
T PF05673_consen 22 DPIRLDD--LIGIERQKEALIEN-TEQFL---------QGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKE 89 (249)
T ss_pred CCCCHHH--hcCHHHHHHHHHHH-HHHHH---------cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHH
Confidence 5678888 99999999999443 32222 234678999999999999999999999885444443 3333
Q ss_pred hhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCc--cccCc
Q 007661 290 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV--ESLNN 367 (594)
Q Consensus 290 ~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~--~~~~~ 367 (594)
++ ..+.++++...... . .-|||+||+.- +..+.-...|-..|||- ....|
T Consensus 90 ~L---------~~l~~l~~~l~~~~-~------kFIlf~DDLsF------------e~~d~~yk~LKs~LeGgle~~P~N 141 (249)
T PF05673_consen 90 DL---------GDLPELLDLLRDRP-Y------KFILFCDDLSF------------EEGDTEYKALKSVLEGGLEARPDN 141 (249)
T ss_pred Hh---------ccHHHHHHHHhcCC-C------CEEEEecCCCC------------CCCcHHHHHHHHHhcCccccCCCc
Confidence 33 23455555554321 1 33999998652 11223345677777763 34568
Q ss_pred EEEEEeeCCcccccHH---------------------hhCCCCccceeecCCCCHHHHHHHHHHHHhccc
Q 007661 368 VLLIGMTNRKDMLDEA---------------------LLRPGRLEVQVEISLPDENGRLQILQIHTNKMK 416 (594)
Q Consensus 368 v~vI~~tn~~~~ld~a---------------------l~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~ 416 (594)
|++.+|+|+-+.+.+. +.-..||...|.|..|+.++-.+|++.++++..
T Consensus 142 vliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g 211 (249)
T PF05673_consen 142 VLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYG 211 (249)
T ss_pred EEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcC
Confidence 9999999986544322 111239999999999999999999999987654
No 137
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=8e-11 Score=124.83 Aligned_cols=196 Identities=17% Similarity=0.206 Sum_probs=131.4
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCC---------c
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME---------P 283 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~---------~ 283 (594)
+.+|++ +.|.+..++.+ +..+... +.+.++|||||||+|||++|+++++.+.+.. +
T Consensus 13 P~~~~~--iig~~~~~~~l-~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~ 77 (367)
T PRK14970 13 PQTFDD--VVGQSHITNTL-LNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF 77 (367)
T ss_pred CCcHHh--cCCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence 467888 89999988877 6665432 2345899999999999999999999885421 1
Q ss_pred EEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc
Q 007661 284 KIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE 363 (594)
Q Consensus 284 ~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~ 363 (594)
..+.. +.........++++++.+... |.. +...|++|||+|.+.. ..++.|+..++.
T Consensus 78 ~~~~l----~~~~~~~~~~i~~l~~~~~~~-p~~---~~~kiviIDE~~~l~~-------------~~~~~ll~~le~-- 134 (367)
T PRK14970 78 NIFEL----DAASNNSVDDIRNLIDQVRIP-PQT---GKYKIYIIDEVHMLSS-------------AAFNAFLKTLEE-- 134 (367)
T ss_pred ceEEe----ccccCCCHHHHHHHHHHHhhc-ccc---CCcEEEEEeChhhcCH-------------HHHHHHHHHHhC--
Confidence 11111 111112245677788776532 222 2356999999998741 235566666654
Q ss_pred ccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHH
Q 007661 364 SLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELE 443 (594)
Q Consensus 364 ~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~ 443 (594)
.....++|.+++.+..+.+++.++++ .++++.|+.++...++...+++... -.++..++.|+..+.| +.+.+.
T Consensus 135 ~~~~~~~Il~~~~~~kl~~~l~sr~~---~v~~~~~~~~~l~~~l~~~~~~~g~---~i~~~al~~l~~~~~g-dlr~~~ 207 (367)
T PRK14970 135 PPAHAIFILATTEKHKIIPTILSRCQ---IFDFKRITIKDIKEHLAGIAVKEGI---KFEDDALHIIAQKADG-ALRDAL 207 (367)
T ss_pred CCCceEEEEEeCCcccCCHHHHhcce---eEecCCccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhCCC-CHHHHH
Confidence 23356677777777888999987443 6899999999999998877765431 1345567888887764 667776
Q ss_pred HHHHHHHHHH
Q 007661 444 GVAKSAVSFA 453 (594)
Q Consensus 444 ~l~~~A~~~a 453 (594)
+.++....++
T Consensus 208 ~~lekl~~y~ 217 (367)
T PRK14970 208 SIFDRVVTFC 217 (367)
T ss_pred HHHHHHHHhc
Confidence 6666655443
No 138
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=4e-11 Score=133.65 Aligned_cols=199 Identities=21% Similarity=0.273 Sum_probs=135.8
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcE--EEecch
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK--IVNGPE 290 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~--~v~~~~ 290 (594)
+.+|++ |.|.+..++.+ +.++..- +.+..+|||||+|+|||++|+++|+.+.+.... .-.|..
T Consensus 14 P~~f~d--IiGQe~~v~~L-~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 14 PKTFDD--IVGQDHIVQTL-KNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 457888 99999988877 7766532 234468999999999999999999998653210 001111
Q ss_pred hh---hc----c--cc---hhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHh
Q 007661 291 VL---SK----F--VG---ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTK 358 (594)
Q Consensus 291 l~---~~----~--~g---~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ 358 (594)
+. +. + -+ .....++++.+.+... |..+ ...|++|||+|.+- ....+.||..
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~-P~~g---~~KV~IIDEa~~LT-------------~~A~NALLKt 141 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNL-PTQS---KYKIYIIDEVHMLS-------------KSAFNALLKT 141 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhc-hhcC---CCEEEEEEChhhCC-------------HHHHHHHHHH
Confidence 10 00 0 01 2245588888776643 3222 34599999999874 2356678877
Q ss_pred hcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCC
Q 007661 359 IDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYS 438 (594)
Q Consensus 359 ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~s 438 (594)
|+. ....+++|.+|+.++.|.+.+++ |+. .++|..|+.++..+.|+..+.+... ..++..+..+|..+.| +
T Consensus 142 LEE--PP~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI---~id~eAl~~LA~lS~G-s 212 (725)
T PRK07133 142 LEE--PPKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENI---SYEKNALKLIAKLSSG-S 212 (725)
T ss_pred hhc--CCCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCC-C
Confidence 774 34578888888889999999988 543 7999999999999999877665431 1233347778888775 6
Q ss_pred HHHHHHHHHHHHHH
Q 007661 439 GAELEGVAKSAVSF 452 (594)
Q Consensus 439 g~dl~~l~~~A~~~ 452 (594)
.+++..++..+..+
T Consensus 213 lR~AlslLekl~~y 226 (725)
T PRK07133 213 LRDALSIAEQVSIF 226 (725)
T ss_pred HHHHHHHHHHHHHh
Confidence 67777777765543
No 139
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=3.7e-11 Score=137.31 Aligned_cols=197 Identities=17% Similarity=0.114 Sum_probs=129.4
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcE----EEec
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK----IVNG 288 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~----~v~~ 288 (594)
..+|++ |.|.+..++.| +.++..- +.+..+||+||+|||||++|+.+|+.+.|..-- .-.|
T Consensus 11 P~~f~e--iiGqe~v~~~L-~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 11 PATFAE--VIGQEHVTEPL-STALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 457888 99999988877 6665431 223458999999999999999999999753100 0011
Q ss_pred chhhh------------cccc---hhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHH
Q 007661 289 PEVLS------------KFVG---ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVN 353 (594)
Q Consensus 289 ~~l~~------------~~~g---~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~ 353 (594)
..+.. .+-+ ..-..+|++.+.+.. .+.. +...|+||||+|.|- ....+
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~-~p~~---~~~KV~IIDEad~lt-------------~~a~N 138 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFF-APAE---SRYKIFIIDEAHMVT-------------PQGFN 138 (824)
T ss_pred HHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHh-chhc---CCceEEEEechhhcC-------------HHHHH
Confidence 11110 0001 123455665544432 2221 234599999999984 23456
Q ss_pred HHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHH
Q 007661 354 QLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAAR 433 (594)
Q Consensus 354 ~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~ 433 (594)
.||..|+.. ..++++|.+|+.++.|-+.|++++. +++|..++.++..++|+..+++... -.++..+..++..
T Consensus 139 aLLK~LEEp--P~~~~fIl~tt~~~kLl~TIrSRc~---~v~F~~l~~~~l~~~L~~il~~EGv---~id~eal~lLa~~ 210 (824)
T PRK07764 139 ALLKIVEEP--PEHLKFIFATTEPDKVIGTIRSRTH---HYPFRLVPPEVMRGYLERICAQEGV---PVEPGVLPLVIRA 210 (824)
T ss_pred HHHHHHhCC--CCCeEEEEEeCChhhhhHHHHhhee---EEEeeCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHH
Confidence 777777753 3478888888888888899988443 8899999999999999887765431 1234456777777
Q ss_pred cCCCCHHHHHHHHHHHH
Q 007661 434 TKNYSGAELEGVAKSAV 450 (594)
Q Consensus 434 t~g~sg~dl~~l~~~A~ 450 (594)
+.| +.+++.++++...
T Consensus 211 sgG-dlR~Al~eLEKLi 226 (824)
T PRK07764 211 GGG-SVRDSLSVLDQLL 226 (824)
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 765 6677777666655
No 140
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.33 E-value=4.9e-11 Score=123.81 Aligned_cols=181 Identities=18% Similarity=0.220 Sum_probs=113.2
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhh
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL 292 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~ 292 (594)
+-+|++ +.|.+...+.+ +..+.. -..|..+||+||||+|||++|+++++++ +..+..+++.+
T Consensus 17 P~~~~~--~~~~~~~~~~l-~~~~~~------------~~~~~~lll~G~~G~GKT~la~~l~~~~-~~~~~~i~~~~-- 78 (316)
T PHA02544 17 PSTIDE--CILPAADKETF-KSIVKK------------GRIPNMLLHSPSPGTGKTTVAKALCNEV-GAEVLFVNGSD-- 78 (316)
T ss_pred CCcHHH--hcCcHHHHHHH-HHHHhc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHh-CccceEeccCc--
Confidence 357888 89999988877 555431 1234456679999999999999999987 45567777765
Q ss_pred hcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEE
Q 007661 293 SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIG 372 (594)
Q Consensus 293 ~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~ 372 (594)
.. . ..+++.........+.. ..+.+|+|||+|.+.. ...... |...++.. ..++.+|.
T Consensus 79 ~~-~----~~i~~~l~~~~~~~~~~---~~~~vliiDe~d~l~~---------~~~~~~---L~~~le~~--~~~~~~Il 136 (316)
T PHA02544 79 CR-I----DFVRNRLTRFASTVSLT---GGGKVIIIDEFDRLGL---------ADAQRH---LRSFMEAY--SKNCSFII 136 (316)
T ss_pred cc-H----HHHHHHHHHHHHhhccc---CCCeEEEEECcccccC---------HHHHHH---HHHHHHhc--CCCceEEE
Confidence 21 1 12222222211111111 1356999999998731 112223 33334432 24678888
Q ss_pred eeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccc----cCCCCCCcccHHHHHHHcCC
Q 007661 373 MTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMK----ENSFLAPDVNLQELAARTKN 436 (594)
Q Consensus 373 ~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~----~~~~l~~~~~l~~la~~t~g 436 (594)
++|.++.+++++++ |+. .+.++.|+.+++.++++.+.+... ..+...++..+..++....|
T Consensus 137 t~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~ 201 (316)
T PHA02544 137 TANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP 201 (316)
T ss_pred EcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC
Confidence 99999999999998 664 789999999999988876544331 11111122245666665543
No 141
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=3e-13 Score=131.24 Aligned_cols=88 Identities=17% Similarity=0.215 Sum_probs=75.8
Q ss_pred cccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc---ccccc
Q 007661 500 SRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM---IGLHE 576 (594)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~---vG~sE 576 (594)
.+++|+..--..+++.++.++.+++.+...+.+||+||+|||+||||||+||||+|+.....|++|.|+|++ .|+.-
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGp 264 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP 264 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccch
Confidence 345666554445666677778899999999999999999999999999999999999999999999999994 88777
Q ss_pred chhhhHHHHHHHhhh
Q 007661 577 STKCAQIVKVSECQF 591 (594)
Q Consensus 577 ~~~~~~ir~~F~~A~ 591 (594)
+= +|++|+-|-
T Consensus 265 kl----vRqlF~vA~ 275 (440)
T KOG0726|consen 265 KL----VRELFRVAE 275 (440)
T ss_pred HH----HHHHHHHHH
Confidence 64 999999885
No 142
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.32 E-value=5e-11 Score=125.95 Aligned_cols=230 Identities=22% Similarity=0.303 Sum_probs=137.3
Q ss_pred CccCcHHHHHHHHHHHHHc---cCCC-hhhhhhcCC-CCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhh-h
Q 007661 220 GIGGLSAEFADIFRRAFAS---RVFP-PHVTSKLGI-KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL-S 293 (594)
Q Consensus 220 ~igGl~~~~~~i~~~~~~~---~~~~-~~~~~~~g~-~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~-~ 293 (594)
-|.|.+..++.+ ..++.. .+.. +.....-++ ....++||+||||||||++|+++|+.++ .++..+++..+. .
T Consensus 78 ~ViGQe~A~~~l-~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~-~pf~~~da~~L~~~ 155 (413)
T TIGR00382 78 YVIGQEQAKKVL-SVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN-VPFAIADATTLTEA 155 (413)
T ss_pred eecCHHHHHHHH-HHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC-CCeEEechhhcccc
Confidence 389999998877 444421 1111 000000011 1235899999999999999999999884 566777777664 3
Q ss_pred cccchh-HHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCch-HHHHHHHHHHhhcCcc--------
Q 007661 294 KFVGET-EKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGV-HDSIVNQLLTKIDGVE-------- 363 (594)
Q Consensus 294 ~~~g~~-~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~-~~~~v~~Ll~~ld~~~-------- 363 (594)
.|.|+. +..+..++..+... -....+.||||||+|.+.+++........+ ...+.+.||..|+|..
T Consensus 156 gyvG~d~e~~L~~~~~~~~~~----l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~g 231 (413)
T TIGR00382 156 GYVGEDVENILLKLLQAADYD----VEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGG 231 (413)
T ss_pred ccccccHHHHHHHHHHhCccc----HHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCC
Confidence 577874 34444544432111 001134599999999998764322111111 1246677888877542
Q ss_pred ---ccCcEEEEEeeCCc-------------------------------------c-------------cccHHhhCCCCc
Q 007661 364 ---SLNNVLLIGMTNRK-------------------------------------D-------------MLDEALLRPGRL 390 (594)
Q Consensus 364 ---~~~~v~vI~~tn~~-------------------------------------~-------------~ld~al~r~gRf 390 (594)
+..+.++|.|+|-. + .+.|+|+. |+
T Consensus 232 r~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rl 309 (413)
T TIGR00382 232 RKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RL 309 (413)
T ss_pred ccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CC
Confidence 12245666666640 0 02355544 99
Q ss_pred cceeecCCCCHHHHHHHHHHH----HhccccC----C--CCCCcccHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHhc
Q 007661 391 EVQVEISLPDENGRLQILQIH----TNKMKEN----S--FLAPDVNLQELAAR--TKNYSGAELEGVAKSAVSFALNRQ 457 (594)
Q Consensus 391 ~~~i~i~~P~~~~r~~IL~~~----~~~~~~~----~--~l~~~~~l~~la~~--t~g~sg~dl~~l~~~A~~~a~~r~ 457 (594)
+..+.|.+.+.+...+|+... .+++... + ...++..++.|++. ...+-.+.|+.+++......+...
T Consensus 310 d~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~ 388 (413)
T TIGR00382 310 PVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDL 388 (413)
T ss_pred CeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhC
Confidence 999999999999999999763 3322110 0 01133346677775 345667888888888777666544
No 143
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=9.6e-11 Score=129.34 Aligned_cols=199 Identities=20% Similarity=0.241 Sum_probs=134.0
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCC------cEE-
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME------PKI- 285 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~------~~~- 285 (594)
+.+|++ |.|.+..++.+ +.++..- +.+..+|||||||+|||++|+++|+.+.+.. +-.
T Consensus 12 P~~f~d--iiGqe~iv~~L-~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 12 PRDFNS--LEGQDFVVETL-KHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred CCCHHH--ccCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 456888 99999998887 6666432 2344699999999999999999999986431 000
Q ss_pred Eecchhhh-------cccc---hhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHH
Q 007661 286 VNGPEVLS-------KFVG---ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (594)
Q Consensus 286 v~~~~l~~-------~~~g---~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~L 355 (594)
-+|..+.. .+-| ..-..++++.+.+... |.. +...|++|||+|.+- ....+.|
T Consensus 77 ~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~-p~~---~~~KVvIIDEa~~Ls-------------~~a~naL 139 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFP-PAS---SRYRVYIIDEVHMLS-------------NSAFNAL 139 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhc-hhc---CCCEEEEEEChhhcC-------------HHHHHHH
Confidence 01111100 0111 1234566666554432 221 234599999999873 2356677
Q ss_pred HHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcC
Q 007661 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (594)
Q Consensus 356 l~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~ 435 (594)
+..++. ....+++|.+|+.+..|.+++++ |+. .++|..++.++..+.|+..++.... ..++..+..|+..+.
T Consensus 140 LK~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi---~id~eAl~lLa~~s~ 211 (563)
T PRK06647 140 LKTIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQI---KYEDEALKWIAYKST 211 (563)
T ss_pred HHhhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcC
Confidence 777774 34578888888888889999988 543 6899999999999999887765431 234556788888887
Q ss_pred CCCHHHHHHHHHHHHHH
Q 007661 436 NYSGAELEGVAKSAVSF 452 (594)
Q Consensus 436 g~sg~dl~~l~~~A~~~ 452 (594)
| +.+++.+++..+..+
T Consensus 212 G-dlR~alslLdklis~ 227 (563)
T PRK06647 212 G-SVRDAYTLFDQVVSF 227 (563)
T ss_pred C-CHHHHHHHHHHHHhh
Confidence 6 778888887766544
No 144
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.31 E-value=2.6e-12 Score=136.94 Aligned_cols=93 Identities=17% Similarity=0.198 Sum_probs=81.3
Q ss_pred cccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc---cc
Q 007661 496 DLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES---MI 572 (594)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~---~v 572 (594)
...+.+++|+......+.+.+..+..+.+.+...+..|+.|+|||||||||||++|+++|++.+.+|+.|.++++ |+
T Consensus 179 ~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~ 258 (438)
T PTZ00361 179 LESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYL 258 (438)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhc
Confidence 344556677777777777888888888888999999999999999999999999999999999999999999988 48
Q ss_pred ccccchhhhHHHHHHHhhhc
Q 007661 573 GLHESTKCAQIVKVSECQFS 592 (594)
Q Consensus 573 G~sE~~~~~~ir~~F~~A~~ 592 (594)
|++++. ++++|+.|+.
T Consensus 259 Ge~~~~----vr~lF~~A~~ 274 (438)
T PTZ00361 259 GDGPKL----VRELFRVAEE 274 (438)
T ss_pred chHHHH----HHHHHHHHHh
Confidence 998876 9999999875
No 145
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=8.6e-13 Score=129.46 Aligned_cols=88 Identities=22% Similarity=0.235 Sum_probs=74.4
Q ss_pred ccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc---ccccccc
Q 007661 501 RLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES---MIGLHES 577 (594)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~---~vG~sE~ 577 (594)
.++|..+.-..+.+.+..++..++.+.+.+++||.++|||||||+|||++|+++|...|+||+.+.++++ |+|||-+
T Consensus 133 ~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaR 212 (388)
T KOG0651|consen 133 NVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESAR 212 (388)
T ss_pred HhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHH
Confidence 3444444445566666666677778888899999999999999999999999999999999999999998 5998887
Q ss_pred hhhhHHHHHHHhhhc
Q 007661 578 TKCAQIVKVSECQFS 592 (594)
Q Consensus 578 ~~~~~ir~~F~~A~~ 592 (594)
- ||+-|+-|+.
T Consensus 213 l----IRemf~yA~~ 223 (388)
T KOG0651|consen 213 L----IRDMFRYARE 223 (388)
T ss_pred H----HHHHHHHHhh
Confidence 5 9999999985
No 146
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.1e-12 Score=136.35 Aligned_cols=87 Identities=24% Similarity=0.288 Sum_probs=67.4
Q ss_pred cccccCcceeccchhhHHHHHH----HHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEE-Eeccccc-
Q 007661 498 ERSRLNGMVDCGDRHKHIYQRA----MLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVK-IISAESM- 571 (594)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~-v~~~e~~- 571 (594)
+...++|+. ..+.+++++. .-.++.+.+.+...-+|+|||||||||||++|+.|.+..+..==+ |+|||++
T Consensus 219 e~mGIGGLd---~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~ 295 (744)
T KOG0741|consen 219 ESMGIGGLD---KEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILN 295 (744)
T ss_pred hhcccccch---HHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHH
Confidence 333445543 3344444433 334566778899999999999999999999999999998876555 5899995
Q ss_pred --cccccchhhhHHHHHHHhhh
Q 007661 572 --IGLHESTKCAQIVKVSECQF 591 (594)
Q Consensus 572 --vG~sE~~~~~~ir~~F~~A~ 591 (594)
||+||.| ||++|.+|-
T Consensus 296 KYVGeSE~N----vR~LFaDAE 313 (744)
T KOG0741|consen 296 KYVGESEEN----VRKLFADAE 313 (744)
T ss_pred HhhcccHHH----HHHHHHhHH
Confidence 9999999 999999985
No 147
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=1.1e-10 Score=126.87 Aligned_cols=199 Identities=21% Similarity=0.251 Sum_probs=131.4
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCc------E-E
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEP------K-I 285 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~------~-~ 285 (594)
+.+|++ +.|.+..++.+ +.++..- +.+..+|||||+|+|||++|+.+|+.+++... - .
T Consensus 12 P~~f~d--iiGq~~i~~~L-~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 12 PKFFKE--VIGQEIVVRIL-KNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred CCcHHH--ccChHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 346888 89999988877 6666431 22345789999999999999999999864211 0 0
Q ss_pred Eecchhhh----------cccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHH
Q 007661 286 VNGPEVLS----------KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (594)
Q Consensus 286 v~~~~l~~----------~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~L 355 (594)
.+|..+.. .........++.+.+.+.. .|.. +...|++|||+|.+. ....+.|
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~-~P~~---~~~KVvIIDEad~Lt-------------~~a~naL 139 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSY-TPIK---GKYKVYIIDEAHMLT-------------KEAFNAL 139 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHh-Cccc---CCeeEEEEEChhhcC-------------HHHHHHH
Confidence 11111111 0011223346666655543 3332 235699999999873 2234667
Q ss_pred HHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcC
Q 007661 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (594)
Q Consensus 356 l~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~ 435 (594)
+..++.. ...+++|.+|+.++.+.+++++ |+. .+++..|+.++....|+.+++.... ..++..+..++..+.
T Consensus 140 Lk~LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi---~id~~al~~La~~s~ 211 (486)
T PRK14953 140 LKTLEEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKI---EYEEKALDLLAQASE 211 (486)
T ss_pred HHHHhcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcC
Confidence 7776643 3456777777888888888887 543 7999999999999999988876541 123445777888776
Q ss_pred CCCHHHHHHHHHHHHHH
Q 007661 436 NYSGAELEGVAKSAVSF 452 (594)
Q Consensus 436 g~sg~dl~~l~~~A~~~ 452 (594)
| +.+++.++++.+..+
T Consensus 212 G-~lr~al~~Ldkl~~~ 227 (486)
T PRK14953 212 G-GMRDAASLLDQASTY 227 (486)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 5 677888888777644
No 148
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.29 E-value=9.4e-11 Score=131.26 Aligned_cols=232 Identities=20% Similarity=0.232 Sum_probs=133.8
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC---------CCCc
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---------GMEP 283 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~---------~~~~ 283 (594)
.-+|++ |.|.+..++.++ ..+.. ..+.+++|+||||||||++|+++++... ...+
T Consensus 150 p~~~~~--iiGqs~~~~~l~-~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f 213 (615)
T TIGR02903 150 PRAFSE--IVGQERAIKALL-AKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF 213 (615)
T ss_pred cCcHHh--ceeCcHHHHHHH-HHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe
Confidence 356787 899999888873 33322 2245799999999999999999987652 2356
Q ss_pred EEEecchhhh-------cccchhHHH----HHHHHHHHHhhcc--ccCCCCCcEEEEEccchhhhccCCCCCCCCchHHH
Q 007661 284 KIVNGPEVLS-------KFVGETEKN----IRDLFADAENDQR--TRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDS 350 (594)
Q Consensus 284 ~~v~~~~l~~-------~~~g~~~~~----i~~lf~~a~~~~~--~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~ 350 (594)
+.++|..+-. .+.|..... .+..++......+ ..-......+|||||++.|-+.
T Consensus 214 v~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~------------- 280 (615)
T TIGR02903 214 VEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL------------- 280 (615)
T ss_pred EEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH-------------
Confidence 7788765421 111211000 0111110000000 0000011239999999987421
Q ss_pred HHHHHHHhhcCc--------------------------cccCcEEEEEee-CCcccccHHhhCCCCccceeecCCCCHHH
Q 007661 351 IVNQLLTKIDGV--------------------------ESLNNVLLIGMT-NRKDMLDEALLRPGRLEVQVEISLPDENG 403 (594)
Q Consensus 351 ~v~~Ll~~ld~~--------------------------~~~~~v~vI~~t-n~~~~ld~al~r~gRf~~~i~i~~P~~~~ 403 (594)
....|+..++.- ....++++|++| +.++.++++|++ |+. .+++++++.++
T Consensus 281 ~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~ed 357 (615)
T TIGR02903 281 LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPED 357 (615)
T ss_pred HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHH
Confidence 223333333210 012346777665 557789999988 776 67899999999
Q ss_pred HHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHH
Q 007661 404 RLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHAL 483 (594)
Q Consensus 404 r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al 483 (594)
+.+|++..+++... ..++..++.|+..+. .++...+++..+..++..+.... ........|+.+|+.+++
T Consensus 358 i~~Il~~~a~~~~v---~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~-----~~~~~~~~I~~edv~~~l 427 (615)
T TIGR02903 358 IALIVLNAAEKINV---HLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEA-----GKENDKVTITQDDVYEVI 427 (615)
T ss_pred HHHHHHHHHHHcCC---CCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHh-----ccCCCCeeECHHHHHHHh
Confidence 99999998876431 123344566666553 56666566666655544332100 001123578999999998
Q ss_pred Hhc
Q 007661 484 YEI 486 (594)
Q Consensus 484 ~~~ 486 (594)
+.-
T Consensus 428 ~~~ 430 (615)
T TIGR02903 428 QIS 430 (615)
T ss_pred CCC
Confidence 743
No 149
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=1.9e-10 Score=127.52 Aligned_cols=198 Identities=18% Similarity=0.204 Sum_probs=134.6
Q ss_pred cccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEE--------
Q 007661 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI-------- 285 (594)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~-------- 285 (594)
-+|++ +.|.+..++.+ +.++..- +.+..+||+||+|+|||++|+++|+.+.+.....
T Consensus 21 ~~f~d--liGq~~~v~~L-~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~ 85 (598)
T PRK09111 21 QTFDD--LIGQEAMVRTL-TNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85 (598)
T ss_pred CCHHH--hcCcHHHHHHH-HHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence 57888 99999988887 6666432 3455899999999999999999999986532100
Q ss_pred ----Eecchhhhcc----------cchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHH
Q 007661 286 ----VNGPEVLSKF----------VGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSI 351 (594)
Q Consensus 286 ----v~~~~l~~~~----------~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~ 351 (594)
-+|..+.... ....-..+|++.+.+... |..+ ...|+||||+|.+. ...
T Consensus 86 cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~-P~~a---~~KVvIIDEad~Ls-------------~~a 148 (598)
T PRK09111 86 CGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYR-PVSA---RYKVYIIDEVHMLS-------------TAA 148 (598)
T ss_pred CcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhc-hhcC---CcEEEEEEChHhCC-------------HHH
Confidence 0111111100 011245678888776543 3322 34599999999884 234
Q ss_pred HHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHH
Q 007661 352 VNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELA 431 (594)
Q Consensus 352 v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la 431 (594)
.+.|+..|+.. ...+.+|.+|+.++.+.+.+++ |. ..++|..|+.++....|+..+++... ..++..+..|+
T Consensus 149 ~naLLKtLEeP--p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi---~i~~eAl~lIa 220 (598)
T PRK09111 149 FNALLKTLEEP--PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGV---EVEDEALALIA 220 (598)
T ss_pred HHHHHHHHHhC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHH
Confidence 56677776643 3467777788888888888887 44 37999999999999999887765431 12344577778
Q ss_pred HHcCCCCHHHHHHHHHHHHHH
Q 007661 432 ARTKNYSGAELEGVAKSAVSF 452 (594)
Q Consensus 432 ~~t~g~sg~dl~~l~~~A~~~ 452 (594)
..+.| +.+++.+++..+..+
T Consensus 221 ~~a~G-dlr~al~~Ldkli~~ 240 (598)
T PRK09111 221 RAAEG-SVRDGLSLLDQAIAH 240 (598)
T ss_pred HHcCC-CHHHHHHHHHHHHhh
Confidence 87765 778888877766544
No 150
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.28 E-value=4.3e-11 Score=123.55 Aligned_cols=170 Identities=24% Similarity=0.366 Sum_probs=101.0
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcE-------
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK------- 284 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~------- 284 (594)
..++|++ |.|.+..++.++-.++.. ...++||+|+||||||++||++++.++.....
T Consensus 3 ~~~~f~~--i~Gq~~~~~~l~~~~~~~--------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~ 66 (334)
T PRK13407 3 KPFPFSA--IVGQEEMKQAMVLTAIDP--------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNS 66 (334)
T ss_pred CCCCHHH--hCCHHHHHHHHHHHHhcc--------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhccccccc
Confidence 4678998 999999988773322211 11479999999999999999999998521110
Q ss_pred -EEe-cchh--------hh-------cccchhHHHHHH--HHHHHH-hhc--cccC--CCCCcEEEEEccchhhhccCCC
Q 007661 285 -IVN-GPEV--------LS-------KFVGETEKNIRD--LFADAE-NDQ--RTRG--DQSDLHVIIFDEIDAICKSRGS 340 (594)
Q Consensus 285 -~v~-~~~l--------~~-------~~~g~~~~~i~~--lf~~a~-~~~--~~~~--~~~~~~Il~iDEid~l~~~~~~ 340 (594)
.+. +++. .. -..+.++..+-. .++.+- .+. ...| ......+||+||++.+-
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~----- 141 (334)
T PRK13407 67 ARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE----- 141 (334)
T ss_pred CcccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC-----
Confidence 000 0011 00 000001110000 011110 000 0001 00111399999999874
Q ss_pred CCCCCchHHHHHHHHHHhhcCcc-----------ccCcEEEEEeeCCcc-cccHHhhCCCCccceeecCCCCH-HHHHHH
Q 007661 341 TRDGTGVHDSIVNQLLTKIDGVE-----------SLNNVLLIGMTNRKD-MLDEALLRPGRLEVQVEISLPDE-NGRLQI 407 (594)
Q Consensus 341 ~~~~~~~~~~~v~~Ll~~ld~~~-----------~~~~v~vI~~tn~~~-~ld~al~r~gRf~~~i~i~~P~~-~~r~~I 407 (594)
..+++.|+..|+.-. ...++++|+++|..+ .+++++.. ||...+.++.|.. ++|.+|
T Consensus 142 --------~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~i 211 (334)
T PRK13407 142 --------DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEV 211 (334)
T ss_pred --------HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHH
Confidence 335556666664321 234689999988755 48899988 9999999999966 999999
Q ss_pred HHHHH
Q 007661 408 LQIHT 412 (594)
Q Consensus 408 L~~~~ 412 (594)
++...
T Consensus 212 l~~~~ 216 (334)
T PRK13407 212 IRRRD 216 (334)
T ss_pred HHHhh
Confidence 98753
No 151
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=1.7e-10 Score=125.51 Aligned_cols=200 Identities=18% Similarity=0.207 Sum_probs=133.9
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcE------E-
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK------I- 285 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~------~- 285 (594)
.-+|++ |.|.+..++.+ +.++..- +.+..+|||||+|+|||++|+++++.+.+.... .
T Consensus 10 P~~fde--iiGqe~v~~~L-~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 10 PKHFDE--LIGQESVSKTL-SLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred CCCHHH--ccCcHHHHHHH-HHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 357888 99999988877 6655322 234467999999999999999999998432100 0
Q ss_pred Eecchhhhc-----c-c-ch---hHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHH
Q 007661 286 VNGPEVLSK-----F-V-GE---TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (594)
Q Consensus 286 v~~~~l~~~-----~-~-g~---~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~L 355 (594)
-+|..+... + . +. .-..++++.+.+.. .|..+ ...|++|||+|.+- ....+.|
T Consensus 75 ~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~-~P~~~---~~KVvIIDEad~Lt-------------~~A~NAL 137 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKY-KPSMA---RFKIFIIDEVHMLT-------------KEAFNAL 137 (535)
T ss_pred HHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhh-CcccC---CeEEEEEECcccCC-------------HHHHHHH
Confidence 000000000 0 0 11 13456666655432 23222 34599999999873 3355677
Q ss_pred HHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcC
Q 007661 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (594)
Q Consensus 356 l~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~ 435 (594)
|..|+.. ...+.+|.+|+.+..|.+.+++ | ...++|..++.++..+.++..+++... ..++..+..++..+.
T Consensus 138 LK~LEEp--p~~t~FIL~ttd~~kL~~tI~S--R-c~~~~F~~Ls~~ei~~~L~~Il~~EGi---~i~~~Al~~Ia~~s~ 209 (535)
T PRK08451 138 LKTLEEP--PSYVKFILATTDPLKLPATILS--R-TQHFRFKQIPQNSIISHLKTILEKEGV---SYEPEALEILARSGN 209 (535)
T ss_pred HHHHhhc--CCceEEEEEECChhhCchHHHh--h-ceeEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcC
Confidence 7777754 3467777778888889999998 5 348999999999988888877765431 234556788888877
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 007661 436 NYSGAELEGVAKSAVSFA 453 (594)
Q Consensus 436 g~sg~dl~~l~~~A~~~a 453 (594)
| +.+++.+++..|..++
T Consensus 210 G-dlR~alnlLdqai~~~ 226 (535)
T PRK08451 210 G-SLRDTLTLLDQAIIYC 226 (535)
T ss_pred C-cHHHHHHHHHHHHHhc
Confidence 6 8888888888877665
No 152
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=2.4e-10 Score=126.87 Aligned_cols=200 Identities=16% Similarity=0.184 Sum_probs=130.6
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcE--------
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK-------- 284 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~-------- 284 (594)
..+|++ |.|.+..++.+ +.++..- +-+..+||+||+|||||++|+.+|+.+.+....
T Consensus 12 P~~f~e--ivGQe~i~~~L-~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 12 PSKFAD--ITAQEHITHTI-QNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 457888 99999988877 6666432 233469999999999999999999999763210
Q ss_pred --E--Eecch---hhh-------cccch---hHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCch
Q 007661 285 --I--VNGPE---VLS-------KFVGE---TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGV 347 (594)
Q Consensus 285 --~--v~~~~---l~~-------~~~g~---~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~ 347 (594)
. -.|+. +.. .+.+. ....++++.+.+.. .|..+ ...|++|||+|.+.
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~-~P~~~---~~KVvIIdEad~Lt------------ 140 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRY-GPQKG---RYRVYIIDEVHMLS------------ 140 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHh-hhhcC---CCEEEEEeChhhcC------------
Confidence 0 01111 100 11121 23456666655542 23322 24599999999874
Q ss_pred HHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccH
Q 007661 348 HDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNL 427 (594)
Q Consensus 348 ~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l 427 (594)
....+.|+..|+.. ....++|.+|+.++.|-+.+++++. .++|..++.++....++..++.... -.++..+
T Consensus 141 -~~a~naLLK~LEeP--p~~tv~IL~t~~~~kLl~TI~SRc~---~vef~~l~~~ei~~~L~~i~~~egi---~I~~eal 211 (620)
T PRK14954 141 -TAAFNAFLKTLEEP--PPHAIFIFATTELHKIPATIASRCQ---RFNFKRIPLDEIQSQLQMICRAEGI---QIDADAL 211 (620)
T ss_pred -HHHHHHHHHHHhCC--CCCeEEEEEeCChhhhhHHHHhhce---EEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHH
Confidence 22356677777753 2356667777777888888888444 8999999999988888877664331 1345567
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHH
Q 007661 428 QELAARTKNYSGAELEGVAKSAVSFA 453 (594)
Q Consensus 428 ~~la~~t~g~sg~dl~~l~~~A~~~a 453 (594)
+.|+..+.| +.+++.+.+.....++
T Consensus 212 ~~La~~s~G-dlr~al~eLeKL~~y~ 236 (620)
T PRK14954 212 QLIARKAQG-SMRDAQSILDQVIAFS 236 (620)
T ss_pred HHHHHHhCC-CHHHHHHHHHHHHHhc
Confidence 888888875 6667666666555444
No 153
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.27 E-value=8.4e-12 Score=126.99 Aligned_cols=139 Identities=19% Similarity=0.216 Sum_probs=95.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhc--ccchhHHHH----------HHHHHHHHhhccccCCC
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSK--FVGETEKNI----------RDLFADAENDQRTRGDQ 320 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~--~~g~~~~~i----------~~lf~~a~~~~~~~~~~ 320 (594)
..++|||.||||||||++++++|+.++ .+++.+++...+.. .+|.....+ ...+-.|.
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~-~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~--------- 132 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLN-WPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL--------- 132 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHC-CCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH---------
Confidence 456899999999999999999999994 66777877665553 344322111 11122222
Q ss_pred CCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHh-----hc----CccccCcEEEEEeeCCcc------------c
Q 007661 321 SDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTK-----ID----GVESLNNVLLIGMTNRKD------------M 379 (594)
Q Consensus 321 ~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~-----ld----~~~~~~~v~vI~~tn~~~------------~ 379 (594)
..+++|++||+|..-+. ....++.+|+. +. .+....++.||||+|..+ .
T Consensus 133 ~~g~illlDEin~a~p~----------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~ 202 (327)
T TIGR01650 133 QHNVALCFDEYDAGRPD----------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQ 202 (327)
T ss_pred hCCeEEEechhhccCHH----------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeec
Confidence 23569999999986422 23344455542 11 122345789999999865 2
Q ss_pred ccHHhhCCCCccceeecCCCCHHHHHHHHHHHHh
Q 007661 380 LDEALLRPGRLEVQVEISLPDENGRLQILQIHTN 413 (594)
Q Consensus 380 ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~ 413 (594)
++++++. ||...+.++.|+.++-.+|+.....
T Consensus 203 l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 203 INQAQMD--RWSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred CCHHHHh--heeeEeeCCCCCHHHHHHHHHhhcc
Confidence 6899988 9988889999999999999986643
No 154
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=1.7e-10 Score=123.32 Aligned_cols=200 Identities=17% Similarity=0.180 Sum_probs=127.9
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcE--------
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK-------- 284 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~-------- 284 (594)
..+|++ |.|.+..++.+ +.++..- +.+..+|||||||+|||++|+++|+.+.+....
T Consensus 12 P~~~~e--iiGq~~~~~~L-~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 12 PKKFAD--ITAQEHITRTI-QNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred CCcHhh--ccChHHHHHHH-HHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 456888 89999888766 6666431 234569999999999999999999999653210
Q ss_pred -EEecc------hhhh-------cccc---hhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCch
Q 007661 285 -IVNGP------EVLS-------KFVG---ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGV 347 (594)
Q Consensus 285 -~v~~~------~l~~-------~~~g---~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~ 347 (594)
.-.|. .+.+ .+.+ .....++++.+.+.. .|..+ ...|+||||+|.+..
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~-~p~~~---~~kvvIIdea~~l~~----------- 141 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRY-GPQKG---RYRVYIIDEVHMLSI----------- 141 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhh-chhcC---CeEEEEEeChhhCCH-----------
Confidence 00010 0000 1111 113456666555532 23322 245999999998741
Q ss_pred HHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccH
Q 007661 348 HDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNL 427 (594)
Q Consensus 348 ~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l 427 (594)
...+.|+..++. .....++|.+|+.+..+-+.+++ |.. .+++..++.++..+.++..++.... -.++..+
T Consensus 142 --~~~~~LLk~LEe--p~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~---~i~~~al 211 (397)
T PRK14955 142 --AAFNAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGI---SVDADAL 211 (397)
T ss_pred --HHHHHHHHHHhc--CCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHH
Confidence 234556666663 23456666677777788888887 443 7899999999988888877764321 2345567
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHH
Q 007661 428 QELAARTKNYSGAELEGVAKSAVSFA 453 (594)
Q Consensus 428 ~~la~~t~g~sg~dl~~l~~~A~~~a 453 (594)
+.|+..+.| +.+.+.+.+..+..++
T Consensus 212 ~~l~~~s~g-~lr~a~~~L~kl~~~~ 236 (397)
T PRK14955 212 QLIGRKAQG-SMRDAQSILDQVIAFS 236 (397)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHHhc
Confidence 888888875 6677777777665544
No 155
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=2.9e-10 Score=122.88 Aligned_cols=197 Identities=21% Similarity=0.251 Sum_probs=127.3
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcE--------
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK-------- 284 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~-------- 284 (594)
..+|++ |.|.+..++.+ +.++..- +.+..+|||||||+|||++|+++|+.+.+....
T Consensus 13 P~~~~d--iiGq~~~v~~L-~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~ 77 (451)
T PRK06305 13 PQTFSE--ILGQDAVVAVL-KNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ 77 (451)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence 367888 99999988877 6665431 234568999999999999999999998542100
Q ss_pred EEecchhhh-------cccch---hHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHH
Q 007661 285 IVNGPEVLS-------KFVGE---TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQ 354 (594)
Q Consensus 285 ~v~~~~l~~-------~~~g~---~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~ 354 (594)
..+|..+.. .+.|. .-..++++-+..... +. .+...|++|||+|.+- ....+.
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~-~~---~~~~kvvIIdead~lt-------------~~~~n~ 140 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFT-PS---KSRYKIYIIDEVHMLT-------------KEAFNS 140 (451)
T ss_pred cHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhh-hh---cCCCEEEEEecHHhhC-------------HHHHHH
Confidence 001111110 01111 123444444333221 11 1234699999999874 224567
Q ss_pred HHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHc
Q 007661 355 LLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAART 434 (594)
Q Consensus 355 Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t 434 (594)
|+..|+.. ...+++|.+|+.+..|.+.+++ |.. .+++..++.++..+.|+..+++... -.++..+..|+..+
T Consensus 141 LLk~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~---~i~~~al~~L~~~s 212 (451)
T PRK06305 141 LLKTLEEP--PQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGI---ETSREALLPIARAA 212 (451)
T ss_pred HHHHhhcC--CCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHc
Confidence 77777753 3477778888888889999988 443 7999999999999888877665321 13445678888888
Q ss_pred CCCCHHHHHHHHHHHH
Q 007661 435 KNYSGAELEGVAKSAV 450 (594)
Q Consensus 435 ~g~sg~dl~~l~~~A~ 450 (594)
.| +.+++.+++....
T Consensus 213 ~g-dlr~a~~~Lekl~ 227 (451)
T PRK06305 213 QG-SLRDAESLYDYVV 227 (451)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 65 6666666665544
No 156
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=3.1e-10 Score=126.70 Aligned_cols=195 Identities=20% Similarity=0.238 Sum_probs=128.9
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEE------E
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI------V 286 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~------v 286 (594)
...|++ +.|.+..++.| +.++..- +.+.++||+||+|+|||++|+++|+.+.+..... -
T Consensus 12 P~~f~~--liGq~~i~~~L-~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 12 PQRFDE--LVGQEAIATTL-KNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred CCcHhh--ccChHHHHHHH-HHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 356887 89999988887 6666532 1234799999999999999999999986532100 0
Q ss_pred ecc-----------hhh--hcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHH
Q 007661 287 NGP-----------EVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVN 353 (594)
Q Consensus 287 ~~~-----------~l~--~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~ 353 (594)
.|. ++. ..........++++.+.+.. .+..+ ...|+||||+|.|- ....+
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~-~p~~~---~~KViIIDEad~Lt-------------~~a~n 139 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQF-APVQA---RWKVYVIDECHMLS-------------TAAFN 139 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhh-ChhcC---CceEEEEECccccC-------------HHHHH
Confidence 011 110 11122345678888877653 23222 23599999999873 23456
Q ss_pred HHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHH
Q 007661 354 QLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAAR 433 (594)
Q Consensus 354 ~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~ 433 (594)
.||..|+. ....+++|++|+.++.+-+.+++ |. ..++|..++.++....+....++... -.++..+..+++.
T Consensus 140 aLLK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi---~is~~al~~La~~ 211 (620)
T PRK14948 140 ALLKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESI---EIEPEALTLVAQR 211 (620)
T ss_pred HHHHHHhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHH
Confidence 77887774 34578888888888888899987 43 36889999888877777766654321 1233457788888
Q ss_pred cCCCCHHHHHHHHHH
Q 007661 434 TKNYSGAELEGVAKS 448 (594)
Q Consensus 434 t~g~sg~dl~~l~~~ 448 (594)
+.| ..+++.++++.
T Consensus 212 s~G-~lr~A~~lLek 225 (620)
T PRK14948 212 SQG-GLRDAESLLDQ 225 (620)
T ss_pred cCC-CHHHHHHHHHH
Confidence 776 44666555554
No 157
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=3.9e-12 Score=132.73 Aligned_cols=96 Identities=22% Similarity=0.256 Sum_probs=83.6
Q ss_pred CccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc---
Q 007661 494 TDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES--- 570 (594)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~--- 570 (594)
.+++.|.++.|+.+....+.+...|+......|.. -..|.+|+||+||||+|||+||+|+|.|++..|+.|..+.+
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~g-lr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK 225 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLG-LREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK 225 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhhc-cccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh
Confidence 34577888888888888888888888887777643 44678899999999999999999999999999999999999
Q ss_pred ccccccchhhhHHHHHHHhhhcCC
Q 007661 571 MIGLHESTKCAQIVKVSECQFSGS 594 (594)
Q Consensus 571 ~vG~sE~~~~~~ir~~F~~A~~~~ 594 (594)
|+|++|+. ||.+|.-||.-+
T Consensus 226 ~~Ge~eK~----vralf~vAr~~q 245 (428)
T KOG0740|consen 226 YVGESEKL----VRALFKVARSLQ 245 (428)
T ss_pred ccChHHHH----HHHHHHHHHhcC
Confidence 59999987 999999998743
No 158
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.23 E-value=8e-12 Score=137.40 Aligned_cols=94 Identities=19% Similarity=0.257 Sum_probs=76.8
Q ss_pred ccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc---c
Q 007661 495 DDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES---M 571 (594)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~---~ 571 (594)
+.+.+.++.|....+..+.++... ....+.+...+..++.|+|||||||||||++|+++|.+++.+|+.+++++. +
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~ 128 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 128 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHH
Confidence 345556666776666666666554 455666777788999999999999999999999999999999999999876 4
Q ss_pred cccccchhhhHHHHHHHhhhcC
Q 007661 572 IGLHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 572 vG~sE~~~~~~ir~~F~~A~~~ 593 (594)
+|+++++ ++++|+.|++.
T Consensus 129 ~g~~~~~----l~~~f~~a~~~ 146 (495)
T TIGR01241 129 VGVGASR----VRDLFEQAKKN 146 (495)
T ss_pred hcccHHH----HHHHHHHHHhc
Confidence 8998887 99999999763
No 159
>PRK09087 hypothetical protein; Validated
Probab=99.23 E-value=2e-10 Score=112.92 Aligned_cols=204 Identities=18% Similarity=0.155 Sum_probs=123.2
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
++.+|++.-+|+-....-.++++ . + + .+...++|+||+|+|||+|++++++... ..+++..++
T Consensus 16 ~~~~~~~Fi~~~~N~~a~~~l~~----~---~------~-~~~~~l~l~G~~GsGKThLl~~~~~~~~---~~~i~~~~~ 78 (226)
T PRK09087 16 PAYGRDDLLVTESNRAAVSLVDH----W---P------N-WPSPVVVLAGPVGSGKTHLASIWREKSD---ALLIHPNEI 78 (226)
T ss_pred CCCChhceeecCchHHHHHHHHh----c---c------c-CCCCeEEEECCCCCCHHHHHHHHHHhcC---CEEecHHHc
Confidence 67788886445545432222122 1 1 1 1234599999999999999999998752 334544332
Q ss_pred hhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEE
Q 007661 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLI 371 (594)
Q Consensus 292 ~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI 371 (594)
... ++...... +|+|||++.+.. + .. .|...++.+...++.+||
T Consensus 79 ~~~-----------~~~~~~~~-----------~l~iDDi~~~~~--------~--~~----~lf~l~n~~~~~g~~ili 122 (226)
T PRK09087 79 GSD-----------AANAAAEG-----------PVLIEDIDAGGF--------D--ET----GLFHLINSVRQAGTSLLM 122 (226)
T ss_pred chH-----------HHHhhhcC-----------eEEEECCCCCCC--------C--HH----HHHHHHHHHHhCCCeEEE
Confidence 221 11112111 899999997621 0 11 133333333344566777
Q ss_pred EeeCCccc---ccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHH
Q 007661 372 GMTNRKDM---LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKS 448 (594)
Q Consensus 372 ~~tn~~~~---ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~ 448 (594)
+++..|.. ..+.|+++......+++..|+.+.|.+||+.+++... ...++..++.|+++..+ +.+.+..++..
T Consensus 123 ts~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~---~~l~~ev~~~La~~~~r-~~~~l~~~l~~ 198 (226)
T PRK09087 123 TSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQ---LYVDPHVVYYLVSRMER-SLFAAQTIVDR 198 (226)
T ss_pred ECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHhhh-hHHHHHHHHHH
Confidence 77666543 3678888333357999999999999999999887642 23455668889988874 55556555555
Q ss_pred HHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhc
Q 007661 449 AVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (594)
Q Consensus 449 A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~ 486 (594)
....++.. ...+|..-+.++++.+
T Consensus 199 L~~~~~~~--------------~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 199 LDRLALER--------------KSRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHh--------------CCCCCHHHHHHHHHhh
Confidence 44444321 2346777777776654
No 160
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.23 E-value=1.4e-10 Score=124.64 Aligned_cols=200 Identities=19% Similarity=0.245 Sum_probs=143.0
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCc-EE---E--
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEP-KI---V-- 286 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~-~~---v-- 286 (594)
..+|++ +.|.+...+.| +.++..--. ..+.||.||.|||||++||.+|+.+++... .. .
T Consensus 12 P~~F~e--vvGQe~v~~~L-~nal~~~ri------------~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C 76 (515)
T COG2812 12 PKTFDD--VVGQEHVVKTL-SNALENGRI------------AHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC 76 (515)
T ss_pred cccHHH--hcccHHHHHHH-HHHHHhCcc------------hhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhh
Confidence 457888 89999888877 777654332 236899999999999999999999986641 11 1
Q ss_pred -ecchhhhc----------ccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHH
Q 007661 287 -NGPEVLSK----------FVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (594)
Q Consensus 287 -~~~~l~~~----------~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~L 355 (594)
+|.++... -....-..+|++.+.+.- .|..+. ..|++|||+|+|- ....+.|
T Consensus 77 ~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y-~P~~~r---yKVyiIDEvHMLS-------------~~afNAL 139 (515)
T COG2812 77 ISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNY-APSEGR---YKVYIIDEVHMLS-------------KQAFNAL 139 (515)
T ss_pred hhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhcc-CCcccc---ceEEEEecHHhhh-------------HHHHHHH
Confidence 11112111 112244567888777653 555554 4599999999984 4467788
Q ss_pred HHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcC
Q 007661 356 LTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK 435 (594)
Q Consensus 356 l~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~ 435 (594)
|.-++ ++..+|.+|.+|..++.|++.+++++. .+.|...+.++....|+..+.+..- ..++..+..+|+...
T Consensus 140 LKTLE--EPP~hV~FIlATTe~~Kip~TIlSRcq---~f~fkri~~~~I~~~L~~i~~~E~I---~~e~~aL~~ia~~a~ 211 (515)
T COG2812 140 LKTLE--EPPSHVKFILATTEPQKIPNTILSRCQ---RFDFKRLDLEEIAKHLAAILDKEGI---NIEEDALSLIARAAE 211 (515)
T ss_pred hcccc--cCccCeEEEEecCCcCcCchhhhhccc---cccccCCCHHHHHHHHHHHHHhcCC---ccCHHHHHHHHHHcC
Confidence 88777 355689999999999999999998443 5778888999888888877765441 123445677777777
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 007661 436 NYSGAELEGVAKSAVSFA 453 (594)
Q Consensus 436 g~sg~dl~~l~~~A~~~a 453 (594)
| +.+|..+++..|..+.
T Consensus 212 G-s~RDalslLDq~i~~~ 228 (515)
T COG2812 212 G-SLRDALSLLDQAIAFG 228 (515)
T ss_pred C-ChhhHHHHHHHHHHcc
Confidence 6 7899999988887664
No 161
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.22 E-value=8.3e-10 Score=114.61 Aligned_cols=191 Identities=17% Similarity=0.198 Sum_probs=119.7
Q ss_pred cccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCC----CcEEEecc
Q 007661 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGM----EPKIVNGP 289 (594)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~----~~~~v~~~ 289 (594)
.+|++ +.|.+.+++.+ +.++... ...+++|+||||||||++++++++++.+. .++.++++
T Consensus 14 ~~~~~--~~g~~~~~~~l-~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~ 77 (319)
T PRK00440 14 RTLDE--IVGQEEIVERL-KSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNAS 77 (319)
T ss_pred CcHHH--hcCcHHHHHHH-HHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccc
Confidence 46787 88999988877 6555321 12258999999999999999999987432 12223322
Q ss_pred hhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEE
Q 007661 290 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVL 369 (594)
Q Consensus 290 ~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~ 369 (594)
+.. ....+++.+.......|..+ ..+.+|+|||+|.+.. ...+.|+..++.... +..
T Consensus 78 ~~~------~~~~~~~~i~~~~~~~~~~~--~~~~vviiDe~~~l~~-------------~~~~~L~~~le~~~~--~~~ 134 (319)
T PRK00440 78 DER------GIDVIRNKIKEFARTAPVGG--APFKIIFLDEADNLTS-------------DAQQALRRTMEMYSQ--NTR 134 (319)
T ss_pred ccc------chHHHHHHHHHHHhcCCCCC--CCceEEEEeCcccCCH-------------HHHHHHHHHHhcCCC--CCe
Confidence 211 11123333333333232211 2356999999998741 123445555554332 455
Q ss_pred EEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHH
Q 007661 370 LIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSA 449 (594)
Q Consensus 370 vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A 449 (594)
+|.++|.+..+.+.+.+ |+. .+++++|+.++...+++.++++... -.++..+..++..+.| +.+.+.+.++.+
T Consensus 135 lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~---~i~~~al~~l~~~~~g-d~r~~~~~l~~~ 207 (319)
T PRK00440 135 FILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGI---EITDDALEAIYYVSEG-DMRKAINALQAA 207 (319)
T ss_pred EEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 66677777777777877 544 5899999999999999988876432 1345568888888765 555555555544
Q ss_pred H
Q 007661 450 V 450 (594)
Q Consensus 450 ~ 450 (594)
.
T Consensus 208 ~ 208 (319)
T PRK00440 208 A 208 (319)
T ss_pred H
Confidence 3
No 162
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.21 E-value=3.3e-10 Score=130.04 Aligned_cols=202 Identities=22% Similarity=0.316 Sum_probs=130.4
Q ss_pred CccCcHHHHHHHHHHHHHccCCChhhhhhcCCC---CCc-eEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhc-
Q 007661 220 GIGGLSAEFADIFRRAFASRVFPPHVTSKLGIK---HVK-GMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSK- 294 (594)
Q Consensus 220 ~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~---~~~-giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~- 294 (594)
.|.|.+..++.+ .+++.. .+.|+. .|. .+||+||||||||++|+++|+.+. ..++.++++++..+
T Consensus 455 ~v~GQ~~ai~~l-~~~i~~--------~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-~~~~~~d~se~~~~~ 524 (731)
T TIGR02639 455 KIFGQDEAIDSL-VSSIKR--------SRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-VHLERFDMSEYMEKH 524 (731)
T ss_pred ceeCcHHHHHHH-HHHHHH--------HhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-CCeEEEeCchhhhcc
Confidence 377777777777 444432 123332 233 489999999999999999999984 56777888776542
Q ss_pred -----------ccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc
Q 007661 295 -----------FVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE 363 (594)
Q Consensus 295 -----------~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~ 363 (594)
|+|..+ ...+.+..+.. | .+||+|||+|.+. ..+.+.|+..||.-.
T Consensus 525 ~~~~lig~~~gyvg~~~--~~~l~~~~~~~-p-------~~VvllDEieka~-------------~~~~~~Ll~~ld~g~ 581 (731)
T TIGR02639 525 TVSRLIGAPPGYVGFEQ--GGLLTEAVRKH-P-------HCVLLLDEIEKAH-------------PDIYNILLQVMDYAT 581 (731)
T ss_pred cHHHHhcCCCCCcccch--hhHHHHHHHhC-C-------CeEEEEechhhcC-------------HHHHHHHHHhhccCe
Confidence 233221 12223333322 2 3599999999874 235666777776421
Q ss_pred ---------ccCcEEEEEeeCCcc-------------------------cccHHhhCCCCccceeecCCCCHHHHHHHHH
Q 007661 364 ---------SLNNVLLIGMTNRKD-------------------------MLDEALLRPGRLEVQVEISLPDENGRLQILQ 409 (594)
Q Consensus 364 ---------~~~~v~vI~~tn~~~-------------------------~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~ 409 (594)
...+.++|+|||... .+.|.++. |++..|.|.+.+.++..+|++
T Consensus 582 ~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~ 659 (731)
T TIGR02639 582 LTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQ 659 (731)
T ss_pred eecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHH
Confidence 234678999987631 13556665 999999999999999999999
Q ss_pred HHHhcccc----CC--CCCCcccHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHh
Q 007661 410 IHTNKMKE----NS--FLAPDVNLQELAAR--TKNYSGAELEGVAKSAVSFALNR 456 (594)
Q Consensus 410 ~~~~~~~~----~~--~l~~~~~l~~la~~--t~g~sg~dl~~l~~~A~~~a~~r 456 (594)
..++++.. .+ ...++..++.|++. ...|..+.|+.+++......+..
T Consensus 660 ~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~ 714 (731)
T TIGR02639 660 KFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSD 714 (731)
T ss_pred HHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHH
Confidence 88765321 10 11233446667764 34466788888877776665543
No 163
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.20 E-value=4e-10 Score=128.09 Aligned_cols=203 Identities=19% Similarity=0.256 Sum_probs=127.8
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCC----CCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh---
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGI----KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS--- 293 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~----~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~--- 293 (594)
|.|.+..++.+ ..++.... .|+ +|...+||+||||||||++|+++|+.+. .+++.++++++..
T Consensus 460 ViGQ~~ai~~l-~~~i~~~~--------~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~-~~~i~id~se~~~~~~ 529 (758)
T PRK11034 460 VFGQDKAIEAL-TEAIKMSR--------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-IELLRFDMSEYMERHT 529 (758)
T ss_pred EeCcHHHHHHH-HHHHHHHh--------ccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC-CCcEEeechhhccccc
Confidence 78888888888 55554321 122 2334699999999999999999999994 6777888877643
Q ss_pred --cccchhH----HH-HHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCc--c-
Q 007661 294 --KFVGETE----KN-IRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV--E- 363 (594)
Q Consensus 294 --~~~g~~~----~~-i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~--~- 363 (594)
+.+|... .. -..+.+..... | .+||||||+|.+. ..+.+.|+..||.- .
T Consensus 530 ~~~LiG~~~gyvg~~~~g~L~~~v~~~-p-------~sVlllDEieka~-------------~~v~~~LLq~ld~G~ltd 588 (758)
T PRK11034 530 VSRLIGAPPGYVGFDQGGLLTDAVIKH-P-------HAVLLLDEIEKAH-------------PDVFNLLLQVMDNGTLTD 588 (758)
T ss_pred HHHHcCCCCCcccccccchHHHHHHhC-C-------CcEEEeccHhhhh-------------HHHHHHHHHHHhcCeeec
Confidence 2222110 00 11122222222 2 3599999999974 23666777777632 1
Q ss_pred ------ccCcEEEEEeeCCc-------------------------ccccHHhhCCCCccceeecCCCCHHHHHHHHHHHH
Q 007661 364 ------SLNNVLLIGMTNRK-------------------------DMLDEALLRPGRLEVQVEISLPDENGRLQILQIHT 412 (594)
Q Consensus 364 ------~~~~v~vI~~tn~~-------------------------~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~ 412 (594)
...++++|+|||.- ..+.|.++. |++..|.|++.+.++..+|+...+
T Consensus 589 ~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l 666 (758)
T PRK11034 589 NNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_pred CCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHH
Confidence 12478899999832 114567766 999999999999999999998776
Q ss_pred hccccC----C--CCCCcccHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHh
Q 007661 413 NKMKEN----S--FLAPDVNLQELAART--KNYSGAELEGVAKSAVSFALNR 456 (594)
Q Consensus 413 ~~~~~~----~--~l~~~~~l~~la~~t--~g~sg~dl~~l~~~A~~~a~~r 456 (594)
+.+... + ...++..++.|+... ..|-.+.|+.+++.-....+.+
T Consensus 667 ~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~ 718 (758)
T PRK11034 667 VELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_pred HHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 543211 1 011233455666543 2344577777766665555443
No 164
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=9.7e-10 Score=122.92 Aligned_cols=197 Identities=16% Similarity=0.193 Sum_probs=127.7
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcE--EEe---
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK--IVN--- 287 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~--~v~--- 287 (594)
..+|++ |.|.+..++.| +.++... +.+..+|||||+|+|||++|+.+++.+.+.... ...
T Consensus 12 P~~~~e--iiGq~~~~~~L-~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 12 SQTFAE--LVGQEHVVQTL-RNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred CCCHHH--hcCCHHHHHHH-HHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 457888 99999988887 6655431 223468999999999999999999998642210 000
Q ss_pred c---chhhh----------cccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHH
Q 007661 288 G---PEVLS----------KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQ 354 (594)
Q Consensus 288 ~---~~l~~----------~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~ 354 (594)
| ..+.. .........++++.+.+.. .+.. ....|+||||+|.|. ...++.
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~-~p~~---~~~kVvIIDEa~~L~-------------~~a~na 139 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQF-RPAL---ARYKVYIIDEVHMLS-------------TAAFNA 139 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhh-Cccc---CCeEEEEEeChHhCC-------------HHHHHH
Confidence 1 01100 0001223456666655443 2222 234699999999874 234566
Q ss_pred HHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHc
Q 007661 355 LLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAART 434 (594)
Q Consensus 355 Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t 434 (594)
|+..++... .+.++|.+++.++.+.+.+++ |.. .++|..++..+...+++..+++... ..++..+..|+..+
T Consensus 140 LLk~LEepp--~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl---~i~~eal~~La~~s 211 (585)
T PRK14950 140 LLKTLEEPP--PHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGI---NLEPGALEAIARAA 211 (585)
T ss_pred HHHHHhcCC--CCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHc
Confidence 777776532 466777777777888888887 433 6889999999998888877665331 12344577888887
Q ss_pred CCCCHHHHHHHHHHHH
Q 007661 435 KNYSGAELEGVAKSAV 450 (594)
Q Consensus 435 ~g~sg~dl~~l~~~A~ 450 (594)
.| +.+++.+.++...
T Consensus 212 ~G-dlr~al~~LekL~ 226 (585)
T PRK14950 212 TG-SMRDAENLLQQLA 226 (585)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 76 7777777766544
No 165
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.19 E-value=1.5e-11 Score=130.11 Aligned_cols=94 Identities=19% Similarity=0.284 Sum_probs=80.5
Q ss_pred ccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc---
Q 007661 495 DDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM--- 571 (594)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~--- 571 (594)
+.+.+.++.|+......+.+.+..+..+.+.+...+..|+.|+|||||||||||++|+++|.+.+.+|+.+.++++.
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~ 196 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKY 196 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHh
Confidence 34555667777777777777777777888888889999999999999999999999999999999999999998874
Q ss_pred cccccchhhhHHHHHHHhhhc
Q 007661 572 IGLHESTKCAQIVKVSECQFS 592 (594)
Q Consensus 572 vG~sE~~~~~~ir~~F~~A~~ 592 (594)
+|+++.. ++.+|+.|+.
T Consensus 197 ~g~~~~~----i~~~f~~a~~ 213 (364)
T TIGR01242 197 IGEGARL----VREIFELAKE 213 (364)
T ss_pred hhHHHHH----HHHHHHHHHh
Confidence 8887775 9999998875
No 166
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.19 E-value=3.1e-10 Score=117.45 Aligned_cols=167 Identities=20% Similarity=0.305 Sum_probs=97.1
Q ss_pred cccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCC------c----
Q 007661 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME------P---- 283 (594)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~------~---- 283 (594)
|+|.. |.|.+..+..++-.++ .| ...+++|.|+||+|||+++|+++..+.... +
T Consensus 1 ~pf~~--ivgq~~~~~al~~~~~-----~~---------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~ 64 (337)
T TIGR02030 1 FPFTA--IVGQDEMKLALLLNVI-----DP---------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSP 64 (337)
T ss_pred CCccc--cccHHHHHHHHHHHhc-----CC---------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCC
Confidence 45777 9999998877743332 11 134799999999999999999998873100 0
Q ss_pred -----EEEecchh----------------hhcccchhHHHHHHH--HHHH-Hhh----ccccCCCCCcEEEEEccchhhh
Q 007661 284 -----KIVNGPEV----------------LSKFVGETEKNIRDL--FADA-END----QRTRGDQSDLHVIIFDEIDAIC 335 (594)
Q Consensus 284 -----~~v~~~~l----------------~~~~~g~~~~~i~~l--f~~a-~~~----~~~~~~~~~~~Il~iDEid~l~ 335 (594)
+..+|... ...-.|.++..+-.- ++.+ ..+ .+.........+||+||++.+-
T Consensus 65 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~ 144 (337)
T TIGR02030 65 SDPEMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLE 144 (337)
T ss_pred CCccccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCC
Confidence 00000000 000001111111000 1111 000 0000111122499999999974
Q ss_pred ccCCCCCCCCchHHHHHHHHHHhhcCc---------c--ccCcEEEEEeeCCcc-cccHHhhCCCCccceeecCCCCH-H
Q 007661 336 KSRGSTRDGTGVHDSIVNQLLTKIDGV---------E--SLNNVLLIGMTNRKD-MLDEALLRPGRLEVQVEISLPDE-N 402 (594)
Q Consensus 336 ~~~~~~~~~~~~~~~~v~~Ll~~ld~~---------~--~~~~v~vI~~tn~~~-~ld~al~r~gRf~~~i~i~~P~~-~ 402 (594)
..+...|+..|+.- . ...++++|+++|..+ .+.+++.. ||...+.++.|+. +
T Consensus 145 -------------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~e 209 (337)
T TIGR02030 145 -------------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVE 209 (337)
T ss_pred -------------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHH
Confidence 23445566655421 1 123688888888655 58999998 9999999999975 8
Q ss_pred HHHHHHHHH
Q 007661 403 GRLQILQIH 411 (594)
Q Consensus 403 ~r~~IL~~~ 411 (594)
+|.+|++..
T Consensus 210 er~eIL~~~ 218 (337)
T TIGR02030 210 LRVEIVERR 218 (337)
T ss_pred HHHHHHHhh
Confidence 999999874
No 167
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.19 E-value=4e-10 Score=101.91 Aligned_cols=122 Identities=39% Similarity=0.571 Sum_probs=76.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhhcccchhHHH---HHHHHHHHHhhccccCCCCCcEEEE
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGETEKN---IRDLFADAENDQRTRGDQSDLHVII 327 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~~~~g~~~~~---i~~lf~~a~~~~~~~~~~~~~~Il~ 327 (594)
..++++++||||||||++++.+++.+. ...++.+++.+............ ....+..... ..+.+|+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~li 89 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEK--------AKPGVLF 89 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhcc--------CCCeEEE
Confidence 456899999999999999999999872 34566777766655432221111 0111111111 1356999
Q ss_pred EccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccc----cCcEEEEEeeCCcc--cccHHhhCCCCccceeecC
Q 007661 328 FDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVES----LNNVLLIGMTNRKD--MLDEALLRPGRLEVQVEIS 397 (594)
Q Consensus 328 iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~----~~~v~vI~~tn~~~--~ld~al~r~gRf~~~i~i~ 397 (594)
+||++.+.+ . ....++..+..... ..++.+|+++|... .+++.+.+ ||+.+++++
T Consensus 90 lDe~~~~~~---------~----~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 90 IDEIDSLSR---------G----AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred EeChhhhhH---------H----HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 999998721 1 11233333333222 36788999998877 67788877 888777765
No 168
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.18 E-value=6.6e-10 Score=115.00 Aligned_cols=169 Identities=21% Similarity=0.352 Sum_probs=103.0
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEE------
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI------ 285 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~------ 285 (594)
+.++|++ |.|.++.+..++..++ .| ...|+||.|++|||||++||++++.+....++.
T Consensus 12 ~~~pf~~--ivGq~~~k~al~~~~~-----~p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~ 75 (350)
T CHL00081 12 PVFPFTA--IVGQEEMKLALILNVI-----DP---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNS 75 (350)
T ss_pred CCCCHHH--HhChHHHHHHHHHhcc-----CC---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCC
Confidence 6788999 9999998777733222 22 224899999999999999999988874322110
Q ss_pred -Eecchhh-----hc-------------------ccchhHHH------HHHHHHHHHhh-ccccCCCCCcEEEEEccchh
Q 007661 286 -VNGPEVL-----SK-------------------FVGETEKN------IRDLFADAEND-QRTRGDQSDLHVIIFDEIDA 333 (594)
Q Consensus 286 -v~~~~l~-----~~-------------------~~g~~~~~------i~~lf~~a~~~-~~~~~~~~~~~Il~iDEid~ 333 (594)
-+.+++. .. -.|.++.. +...|...... .+..-......+||+||++.
T Consensus 76 ~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInr 155 (350)
T CHL00081 76 HPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNL 155 (350)
T ss_pred CCCChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHh
Confidence 0001110 00 01112221 11122211100 01111111224999999999
Q ss_pred hhccCCCCCCCCchHHHHHHHHHHhhcC---------c--cccCcEEEEEeeCCcc-cccHHhhCCCCccceeecCCCC-
Q 007661 334 ICKSRGSTRDGTGVHDSIVNQLLTKIDG---------V--ESLNNVLLIGMTNRKD-MLDEALLRPGRLEVQVEISLPD- 400 (594)
Q Consensus 334 l~~~~~~~~~~~~~~~~~v~~Ll~~ld~---------~--~~~~~v~vI~~tn~~~-~ld~al~r~gRf~~~i~i~~P~- 400 (594)
+-+ .+...|+..|+. . ....++++|++.|..+ .+.+++.. ||...+.++.|+
T Consensus 156 L~~-------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~ 220 (350)
T CHL00081 156 LDD-------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKD 220 (350)
T ss_pred CCH-------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCC
Confidence 853 344456665542 1 1234688888888765 48999988 999999999997
Q ss_pred HHHHHHHHHHH
Q 007661 401 ENGRLQILQIH 411 (594)
Q Consensus 401 ~~~r~~IL~~~ 411 (594)
.+.+.+|++..
T Consensus 221 ~~~e~~il~~~ 231 (350)
T CHL00081 221 PELRVKIVEQR 231 (350)
T ss_pred hHHHHHHHHhh
Confidence 69999999865
No 169
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.17 E-value=2.1e-11 Score=143.99 Aligned_cols=45 Identities=22% Similarity=0.301 Sum_probs=42.2
Q ss_pred HhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc
Q 007661 527 KVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM 571 (594)
Q Consensus 527 ~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~ 571 (594)
.+.+..||+||||+||||||||+||||+|.++++|||+|.+++.+
T Consensus 1623 lrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl 1667 (2281)
T CHL00206 1623 LRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFL 1667 (2281)
T ss_pred HHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHh
Confidence 456789999999999999999999999999999999999999875
No 170
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=5e-10 Score=111.39 Aligned_cols=81 Identities=27% Similarity=0.433 Sum_probs=61.6
Q ss_pred EEEEccchhhhccCCCCCCCCchHH-HHHHHHHHhhcCc--------cccCcEEEEEee----CCcccccHHhhCCCCcc
Q 007661 325 VIIFDEIDAICKSRGSTRDGTGVHD-SIVNQLLTKIDGV--------ESLNNVLLIGMT----NRKDMLDEALLRPGRLE 391 (594)
Q Consensus 325 Il~iDEid~l~~~~~~~~~~~~~~~-~~v~~Ll~~ld~~--------~~~~~v~vI~~t----n~~~~ld~al~r~gRf~ 391 (594)
|+||||||.++.+.+.+.. ++.+ -+...||-.++|- .....+++||+. ..|++|-|.| .|||+
T Consensus 253 IvFIDEIDKIa~~~~~g~~--dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPEL--QGRfP 328 (444)
T COG1220 253 IVFIDEIDKIAKRGGSGGP--DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPEL--QGRFP 328 (444)
T ss_pred eEEEehhhHHHhcCCCCCC--CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhh--cCCCc
Confidence 9999999999977653321 3333 4556687777763 234568889886 5688888888 67999
Q ss_pred ceeecCCCCHHHHHHHHH
Q 007661 392 VQVEISLPDENGRLQILQ 409 (594)
Q Consensus 392 ~~i~i~~P~~~~r~~IL~ 409 (594)
..+++...+.+.-..||.
T Consensus 329 IRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 329 IRVELDALTKEDFERILT 346 (444)
T ss_pred eEEEcccCCHHHHHHHHc
Confidence 999999999999988884
No 171
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.13 E-value=1.4e-09 Score=104.21 Aligned_cols=153 Identities=20% Similarity=0.239 Sum_probs=99.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhCCCCc-------EEEecc--------hhh--hccc-chhHHHHHHHHHHHHhhc
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEP-------KIVNGP--------EVL--SKFV-GETEKNIRDLFADAENDQ 314 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~~~~~-------~~v~~~--------~l~--~~~~-g~~~~~i~~lf~~a~~~~ 314 (594)
.+..+|||||+|+|||++|+.+++.+.+... ...+|. ++. .... .-....++++.+.+....
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc
Confidence 3457999999999999999999999854200 000010 000 0000 012346666676665432
Q ss_pred cccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCcccee
Q 007661 315 RTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQV 394 (594)
Q Consensus 315 ~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i 394 (594)
.. +...|++|||+|.+. ....+.|+..|+.. ..+..+|.+|+.+..+.+++++ |. ..+
T Consensus 93 -~~---~~~kviiide~~~l~-------------~~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~-~~~ 150 (188)
T TIGR00678 93 -QE---SGRRVVIIEDAERMN-------------EAAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RC-QVL 150 (188)
T ss_pred -cc---CCeEEEEEechhhhC-------------HHHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hc-EEe
Confidence 21 235699999999874 22456677777753 3456677778888889999998 54 389
Q ss_pred ecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCC
Q 007661 395 EISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKN 436 (594)
Q Consensus 395 ~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g 436 (594)
++++|+.++..++|+.+ . + ++..+..++..+.|
T Consensus 151 ~~~~~~~~~~~~~l~~~--g------i-~~~~~~~i~~~~~g 183 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ--G------I-SEEAAELLLALAGG 183 (188)
T ss_pred eCCCCCHHHHHHHHHHc--C------C-CHHHHHHHHHHcCC
Confidence 99999999999888765 1 2 23457777777765
No 172
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.12 E-value=1.6e-09 Score=125.48 Aligned_cols=202 Identities=18% Similarity=0.297 Sum_probs=128.9
Q ss_pred CccCcHHHHHHHHHHHHHcc---CCChhhhhhcCCCCCce-EEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhh
Q 007661 220 GIGGLSAEFADIFRRAFASR---VFPPHVTSKLGIKHVKG-MLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLS 293 (594)
Q Consensus 220 ~igGl~~~~~~i~~~~~~~~---~~~~~~~~~~g~~~~~g-iLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~ 293 (594)
.|.|.+..++.+ .+++... +..| ..|.+ +||+||||||||.+|+++|+.+- ...++.++++++..
T Consensus 567 ~v~GQ~~Av~~v-~~~i~~~~~gl~~~--------~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~ 637 (852)
T TIGR03345 567 RVIGQDHALEAI-AERIRTARAGLEDP--------RKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQE 637 (852)
T ss_pred eEcChHHHHHHH-HHHHHHHhcCCCCC--------CCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhh
Confidence 388999988888 4444322 1111 23444 89999999999999999999983 34567788877654
Q ss_pred c------------ccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcC
Q 007661 294 K------------FVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG 361 (594)
Q Consensus 294 ~------------~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~ 361 (594)
. |+|..+.. .+.+..++. | .+||+||||+... ..+.+.|+..+|.
T Consensus 638 ~~~~~~l~g~~~gyvg~~~~g--~L~~~v~~~-p-------~svvllDEieka~-------------~~v~~~Llq~ld~ 694 (852)
T TIGR03345 638 AHTVSRLKGSPPGYVGYGEGG--VLTEAVRRK-P-------YSVVLLDEVEKAH-------------PDVLELFYQVFDK 694 (852)
T ss_pred hhhhccccCCCCCcccccccc--hHHHHHHhC-C-------CcEEEEechhhcC-------------HHHHHHHHHHhhc
Confidence 2 44433211 122333332 2 4599999999653 3355566666653
Q ss_pred cc---------ccCcEEEEEeeCCccc-----------------------------ccHHhhCCCCccceeecCCCCHHH
Q 007661 362 VE---------SLNNVLLIGMTNRKDM-----------------------------LDEALLRPGRLEVQVEISLPDENG 403 (594)
Q Consensus 362 ~~---------~~~~v~vI~~tn~~~~-----------------------------ld~al~r~gRf~~~i~i~~P~~~~ 403 (594)
-. ...+.++|.|||.... +.|++++ |++ .|.|.+.+.++
T Consensus 695 g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~ 771 (852)
T TIGR03345 695 GVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDV 771 (852)
T ss_pred ceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHH
Confidence 21 1246889999885210 3456666 887 88999999999
Q ss_pred HHHHHHHHHhcccc----C-C-CC-CCcccHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHh
Q 007661 404 RLQILQIHTNKMKE----N-S-FL-APDVNLQELAARTKN--YSGAELEGVAKSAVSFALNR 456 (594)
Q Consensus 404 r~~IL~~~~~~~~~----~-~-~l-~~~~~l~~la~~t~g--~sg~dl~~l~~~A~~~a~~r 456 (594)
..+|++..+..+.. . + .+ .++..++.|++...+ |-.+.|..+++.-...++.+
T Consensus 772 l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~ 833 (852)
T TIGR03345 772 LAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSR 833 (852)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 99999987765321 1 1 01 233346677777643 56788888877766555543
No 173
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=4e-11 Score=135.84 Aligned_cols=95 Identities=19% Similarity=0.247 Sum_probs=87.2
Q ss_pred cccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhc-----CCCEEEEecccc
Q 007661 496 DLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS-----DFPFVKIISAES 570 (594)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~-----~~~fi~v~~~e~ 570 (594)
.+.+..++|+..+...+++++..++.+++.+..+.++||.|+||+||||||||++|+|+|..+ +..|+.=||+..
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~ 340 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADC 340 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchh
Confidence 466777889999999999999999999999999999999999999999999999999999665 688999999998
Q ss_pred c---cccccchhhhHHHHHHHhhhcCC
Q 007661 571 M---IGLHESTKCAQIVKVSECQFSGS 594 (594)
Q Consensus 571 ~---vG~sE~~~~~~ir~~F~~A~~~~ 594 (594)
+ |||.|++ +|-+|+.||+.+
T Consensus 341 lskwvgEaERq----lrllFeeA~k~q 363 (1080)
T KOG0732|consen 341 LSKWVGEAERQ----LRLLFEEAQKTQ 363 (1080)
T ss_pred hccccCcHHHH----HHHHHHHHhccC
Confidence 6 9999998 999999999853
No 174
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.11 E-value=6.4e-10 Score=117.47 Aligned_cols=141 Identities=25% Similarity=0.433 Sum_probs=84.9
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCC----cEE--Ee----cch
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME----PKI--VN----GPE 290 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~----~~~--v~----~~~ 290 (594)
+.+-+..++.++.. + ...++++|+||||||||++|+.+|..+.+.. +.. ++ ..+
T Consensus 177 ~~i~e~~le~l~~~-L---------------~~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeD 240 (459)
T PRK11331 177 LFIPETTIETILKR-L---------------TIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYED 240 (459)
T ss_pred ccCCHHHHHHHHHH-H---------------hcCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHH
Confidence 55666666666332 2 1346899999999999999999999874321 111 11 123
Q ss_pred hhhcc----cchh--HHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhc----
Q 007661 291 VLSKF----VGET--EKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKID---- 360 (594)
Q Consensus 291 l~~~~----~g~~--~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld---- 360 (594)
++..+ .|-. ...+.++.+.|.... ..|++||||||++.-. .++...++..|+
T Consensus 241 FI~G~rP~~vgy~~~~G~f~~~~~~A~~~p------~~~~vliIDEINRani------------~kiFGel~~lLE~~~r 302 (459)
T PRK11331 241 FIQGYRPNGVGFRRKDGIFYNFCQQAKEQP------EKKYVFIIDEINRANL------------SKVFGEVMMLMEHDKR 302 (459)
T ss_pred HhcccCCCCCCeEecCchHHHHHHHHHhcc------cCCcEEEEehhhccCH------------HHhhhhhhhhcccccc
Confidence 33222 1100 112334445554432 1367999999998542 222333333222
Q ss_pred ----------------CccccCcEEEEEeeCCcc----cccHHhhCCCCccceeecCC
Q 007661 361 ----------------GVESLNNVLLIGMTNRKD----MLDEALLRPGRLEVQVEISL 398 (594)
Q Consensus 361 ----------------~~~~~~~v~vI~~tn~~~----~ld~al~r~gRf~~~i~i~~ 398 (594)
.+.-..++.||||+|..+ .+|.||+| ||. .|++.+
T Consensus 303 g~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 303 GENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred ccccceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 234456899999999987 69999999 775 366665
No 175
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=4.9e-09 Score=117.20 Aligned_cols=200 Identities=20% Similarity=0.246 Sum_probs=131.8
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEE-------
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI------- 285 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~------- 285 (594)
..+|++ |.|.+..++.+ +.++..- +.+..+|||||+|+|||++|+.+|+.+.+.....
T Consensus 13 P~~f~~--viGq~~~~~~L-~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~ 77 (614)
T PRK14971 13 PSTFES--VVGQEALTTTL-KNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNE 77 (614)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence 367888 99999988887 6665431 2344689999999999999999999986432100
Q ss_pred -Eecchhhh-------cccc---hhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHH
Q 007661 286 -VNGPEVLS-------KFVG---ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQ 354 (594)
Q Consensus 286 -v~~~~l~~-------~~~g---~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~ 354 (594)
-+|..+.. .+-+ .....++++.+.+... |..+ ...|++|||+|.+- ....+.
T Consensus 78 C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~-P~~~---~~KVvIIdea~~Ls-------------~~a~na 140 (614)
T PRK14971 78 CESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIP-PQIG---KYKIYIIDEVHMLS-------------QAAFNA 140 (614)
T ss_pred chHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhC-cccC---CcEEEEEECcccCC-------------HHHHHH
Confidence 00111100 0011 1245677777666443 3322 24599999999873 234567
Q ss_pred HHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHc
Q 007661 355 LLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAART 434 (594)
Q Consensus 355 Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t 434 (594)
|+..|+.. ....++|.+|+.+..|-+.+++++. .++|..++.++....++..+++... -.++..+..|+..+
T Consensus 141 LLK~LEep--p~~tifIL~tt~~~kIl~tI~SRc~---iv~f~~ls~~ei~~~L~~ia~~egi---~i~~~al~~La~~s 212 (614)
T PRK14971 141 FLKTLEEP--PSYAIFILATTEKHKILPTILSRCQ---IFDFNRIQVADIVNHLQYVASKEGI---TAEPEALNVIAQKA 212 (614)
T ss_pred HHHHHhCC--CCCeEEEEEeCCchhchHHHHhhhh---eeecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHc
Confidence 77777753 3466777777777889999988443 6999999999998888877665431 12334578888888
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 007661 435 KNYSGAELEGVAKSAVSFA 453 (594)
Q Consensus 435 ~g~sg~dl~~l~~~A~~~a 453 (594)
.| +.+++.+++.....++
T Consensus 213 ~g-dlr~al~~Lekl~~y~ 230 (614)
T PRK14971 213 DG-GMRDALSIFDQVVSFT 230 (614)
T ss_pred CC-CHHHHHHHHHHHHHhc
Confidence 65 6777777666655443
No 176
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.10 E-value=1.8e-09 Score=117.02 Aligned_cols=174 Identities=21% Similarity=0.279 Sum_probs=120.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccc
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEI 331 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEi 331 (594)
++.|-+||+||||-||||||+.+|+.. +..++.+|.++- .+...+++....|-......++.+.|.+|+||||
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa-GYsVvEINASDe------Rt~~~v~~kI~~avq~~s~l~adsrP~CLViDEI 396 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA-GYSVVEINASDE------RTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEI 396 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc-CceEEEeccccc------ccHHHHHHHHHHHHhhccccccCCCcceEEEecc
Confidence 445568899999999999999999996 778888998864 4456778888888888778888889999999999
Q ss_pred hhhhccCCCCCCCCchHHHHHHHHHHhhc-------Cccc---------cC---cEEEEEeeCCcccccHHhhCCCCccc
Q 007661 332 DAICKSRGSTRDGTGVHDSIVNQLLTKID-------GVES---------LN---NVLLIGMTNRKDMLDEALLRPGRLEV 392 (594)
Q Consensus 332 d~l~~~~~~~~~~~~~~~~~v~~Ll~~ld-------~~~~---------~~---~v~vI~~tn~~~~ld~al~r~gRf~~ 392 (594)
|--. ...++.++..+. |-.. +. .--||+.+|.. --|+|+----|..
T Consensus 397 DGa~-------------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ 461 (877)
T KOG1969|consen 397 DGAP-------------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAE 461 (877)
T ss_pred cCCc-------------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceE
Confidence 9421 334444544443 1111 00 12578888864 4677763224778
Q ss_pred eeecCCCCHHHHHHHHHHHHhccccCCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 007661 393 QVEISLPDENGRLQILQIHTNKMKENSFLA-PDVNLQELAARTKNYSGAELEGVAKSAVSFALN 455 (594)
Q Consensus 393 ~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~-~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~ 455 (594)
.|.|..|...-..+=|+..+.+.. +. +...+..|++.|. .||.+++......+.+
T Consensus 462 ii~f~~p~~s~Lv~RL~~IC~rE~----mr~d~~aL~~L~el~~----~DIRsCINtLQfLa~~ 517 (877)
T KOG1969|consen 462 IIAFVPPSQSRLVERLNEICHREN----MRADSKALNALCELTQ----NDIRSCINTLQFLASN 517 (877)
T ss_pred EEEecCCChhHHHHHHHHHHhhhc----CCCCHHHHHHHHHHhc----chHHHHHHHHHHHHHh
Confidence 899999988877777776665432 21 2223455555544 5888888776666543
No 177
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.09 E-value=1.5e-09 Score=122.48 Aligned_cols=165 Identities=22% Similarity=0.314 Sum_probs=96.4
Q ss_pred cccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCC-------------
Q 007661 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG------------- 280 (594)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~------------- 280 (594)
|.|.+ |.|.+..+..++ .+... | ...+|||+|+||||||++||++++.+..
T Consensus 1 ~pf~~--ivGq~~~~~al~-~~av~----~---------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p 64 (633)
T TIGR02442 1 FPFTA--IVGQEDLKLALL-LNAVD----P---------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDP 64 (633)
T ss_pred CCcch--hcChHHHHHHHH-HHhhC----C---------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCC
Confidence 35777 999998776663 22221 1 1137999999999999999999998731
Q ss_pred ---------------------CCcEEEecchhhhcccchhHHHHHHHHHHHH-hhccccCCCCCcEEEEEccchhhhccC
Q 007661 281 ---------------------MEPKIVNGPEVLSKFVGETEKNIRDLFADAE-NDQRTRGDQSDLHVIIFDEIDAICKSR 338 (594)
Q Consensus 281 ---------------------~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~-~~~~~~~~~~~~~Il~iDEid~l~~~~ 338 (594)
.+++.+.+.......+|... +...++... ...+.........+|||||++.+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d--~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~--- 139 (633)
T TIGR02442 65 DDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD--IERALREGEKAFQPGLLAEAHRGILYIDEVNLLD--- 139 (633)
T ss_pred CCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc--HHHHhhcCCeeecCcceeecCCCeEEeChhhhCC---
Confidence 11222222111111112110 111111000 000110001112399999999984
Q ss_pred CCCCCCCchHHHHHHHHHHhhcCc-----------cccCcEEEEEeeCCcc-cccHHhhCCCCccceeecCCCC-HHHHH
Q 007661 339 GSTRDGTGVHDSIVNQLLTKIDGV-----------ESLNNVLLIGMTNRKD-MLDEALLRPGRLEVQVEISLPD-ENGRL 405 (594)
Q Consensus 339 ~~~~~~~~~~~~~v~~Ll~~ld~~-----------~~~~~v~vI~~tn~~~-~ld~al~r~gRf~~~i~i~~P~-~~~r~ 405 (594)
..+++.|+..|+.- ....++.+|+++|..+ .+.++|.. ||+..|.++.|. .+++.
T Consensus 140 ----------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~ 207 (633)
T TIGR02442 140 ----------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERV 207 (633)
T ss_pred ----------HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHH
Confidence 34556677666521 1124689999998643 58889988 999999998884 67888
Q ss_pred HHHHHH
Q 007661 406 QILQIH 411 (594)
Q Consensus 406 ~IL~~~ 411 (594)
+|++..
T Consensus 208 ~il~~~ 213 (633)
T TIGR02442 208 EIIRRR 213 (633)
T ss_pred HHHHHH
Confidence 888753
No 178
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.09 E-value=1.6e-09 Score=109.78 Aligned_cols=199 Identities=13% Similarity=0.141 Sum_probs=116.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhCCCCcEE---Eec----chhhh---cccc-----hh-HHHHHHHHHHHHhhccccCC
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLNGMEPKI---VNG----PEVLS---KFVG-----ET-EKNIRDLFADAENDQRTRGD 319 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~~~~~~~---v~~----~~l~~---~~~g-----~~-~~~i~~lf~~a~~~~~~~~~ 319 (594)
.++|+||+|+|||++++.+++.+....+.. ++. .+++. ...| .. ....+.+.+...... .
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~----~ 120 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQF----A 120 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH----h
Confidence 588999999999999999999885333221 111 11111 0011 11 111222222111100 0
Q ss_pred CCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCccc---cc----HHhhCCCCccc
Q 007661 320 QSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDM---LD----EALLRPGRLEV 392 (594)
Q Consensus 320 ~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~---ld----~al~r~gRf~~ 392 (594)
...+.+|+|||++.+.+ .....+..|.+... .....+.|+.+ ..++. +. ..+.+ |+..
T Consensus 121 ~~~~~vliiDe~~~l~~----------~~~~~l~~l~~~~~--~~~~~~~vvl~-g~~~~~~~l~~~~~~~l~~--r~~~ 185 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTP----------ELLEELRMLSNFQT--DNAKLLQIFLV-GQPEFRETLQSPQLQQLRQ--RIIA 185 (269)
T ss_pred CCCCeEEEEECcccCCH----------HHHHHHHHHhCccc--CCCCeEEEEEc-CCHHHHHHHcCchhHHHHh--heee
Confidence 11245999999998741 11222223322211 11222333333 33321 21 23444 7777
Q ss_pred eeecCCCCHHHHHHHHHHHHhccccC-CCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccch
Q 007661 393 QVEISLPDENGRLQILQIHTNKMKEN-SFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEES 471 (594)
Q Consensus 393 ~i~i~~P~~~~r~~IL~~~~~~~~~~-~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~ 471 (594)
.+++++.+.++..+++...++..... ....++..++.|.+.+.|.. +.+..+|..+...|..+. .
T Consensus 186 ~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~-------------~ 251 (269)
T TIGR03015 186 SCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEE-------------K 251 (269)
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcC-------------C
Confidence 89999999999999999888755321 11234567889999999976 459999999998887642 3
Q ss_pred hhcchhHHHHHHHhcc
Q 007661 472 IKVTMDDFLHALYEIV 487 (594)
Q Consensus 472 ~~vt~~df~~al~~~~ 487 (594)
..|+.+++..++.++.
T Consensus 252 ~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 252 REIGGEEVREVIAEID 267 (269)
T ss_pred CCCCHHHHHHHHHHhh
Confidence 4689999999888753
No 179
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.09 E-value=2.4e-09 Score=124.85 Aligned_cols=203 Identities=20% Similarity=0.326 Sum_probs=131.2
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCC----CCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhhc
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGI----KHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSK 294 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~----~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~~ 294 (594)
|.|.+..++.+ ..++.... .|+ +|...+||+||||||||++|+++++.+. ...++.++++++...
T Consensus 567 v~GQ~~av~~v-~~~i~~~~--------~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~ 637 (852)
T TIGR03346 567 VVGQDEAVEAV-SDAIRRSR--------AGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEK 637 (852)
T ss_pred cCCChHHHHHH-HHHHHHHh--------ccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhccc
Confidence 88888888888 44443321 122 2345699999999999999999999873 346777888776442
Q ss_pred ------------ccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCc
Q 007661 295 ------------FVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV 362 (594)
Q Consensus 295 ------------~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~ 362 (594)
|+|..+ -..+.+..... | .+||+||||+.+. ..+.+.|+..++.-
T Consensus 638 ~~~~~l~g~~~g~~g~~~--~g~l~~~v~~~-p-------~~vlllDeieka~-------------~~v~~~Ll~~l~~g 694 (852)
T TIGR03346 638 HSVARLIGAPPGYVGYEE--GGQLTEAVRRK-P-------YSVVLFDEVEKAH-------------PDVFNVLLQVLDDG 694 (852)
T ss_pred chHHHhcCCCCCccCccc--ccHHHHHHHcC-C-------CcEEEEeccccCC-------------HHHHHHHHHHHhcC
Confidence 122111 11222333322 2 2499999999763 33556666666532
Q ss_pred ---------cccCcEEEEEeeCCccc-------------------------ccHHhhCCCCccceeecCCCCHHHHHHHH
Q 007661 363 ---------ESLNNVLLIGMTNRKDM-------------------------LDEALLRPGRLEVQVEISLPDENGRLQIL 408 (594)
Q Consensus 363 ---------~~~~~v~vI~~tn~~~~-------------------------ld~al~r~gRf~~~i~i~~P~~~~r~~IL 408 (594)
....+.+||+|||.... ..|.|.. |++..+.|.+++.+...+|+
T Consensus 695 ~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~ 772 (852)
T TIGR03346 695 RLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIV 772 (852)
T ss_pred ceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHH
Confidence 11346789999987321 2345554 89999999999999999999
Q ss_pred HHHHhcccc----CC--CCCCcccHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhc
Q 007661 409 QIHTNKMKE----NS--FLAPDVNLQELAARTK--NYSGAELEGVAKSAVSFALNRQ 457 (594)
Q Consensus 409 ~~~~~~~~~----~~--~l~~~~~l~~la~~t~--g~sg~dl~~l~~~A~~~a~~r~ 457 (594)
...+..+.. .+ ...++..++.|++... .+..+.|+.+++......+.+.
T Consensus 773 ~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~ 829 (852)
T TIGR03346 773 EIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKK 829 (852)
T ss_pred HHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHH
Confidence 877654321 11 1123445667777643 5678999999888887666543
No 180
>PHA02244 ATPase-like protein
Probab=99.07 E-value=2.2e-09 Score=110.52 Aligned_cols=129 Identities=22% Similarity=0.299 Sum_probs=78.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhc-----ccchhH-HHHHHHHHHHHhhccccCCCCCcEEE
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSK-----FVGETE-KNIRDLFADAENDQRTRGDQSDLHVI 326 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~-----~~g~~~-~~i~~lf~~a~~~~~~~~~~~~~~Il 326 (594)
...+|||+||||||||++|+++|+.+ +.+++.++.. ... +..... ..-..++..... ..+|
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~l-g~pfv~In~l--~d~~~L~G~i~~~g~~~dgpLl~A~~~----------GgvL 184 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEAL-DLDFYFMNAI--MDEFELKGFIDANGKFHETPFYEAFKK----------GGLF 184 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHh-CCCEEEEecC--hHHHhhcccccccccccchHHHHHhhc----------CCEE
Confidence 34579999999999999999999997 4566666632 111 111000 000112222222 3499
Q ss_pred EEccchhhhccCCCCCCCCchHHHHHHHHHH-----hhcC-ccccCcEEEEEeeCCc-----------ccccHHhhCCCC
Q 007661 327 IFDEIDAICKSRGSTRDGTGVHDSIVNQLLT-----KIDG-VESLNNVLLIGMTNRK-----------DMLDEALLRPGR 389 (594)
Q Consensus 327 ~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~-----~ld~-~~~~~~v~vI~~tn~~-----------~~ld~al~r~gR 389 (594)
+|||++.+.+. ....++.++. ..++ +....++.+|+|+|.+ ..++++++. |
T Consensus 185 iLDEId~a~p~----------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--R 252 (383)
T PHA02244 185 FIDEIDASIPE----------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--R 252 (383)
T ss_pred EEeCcCcCCHH----------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--h
Confidence 99999986421 1222333332 1111 1234689999999983 457999998 8
Q ss_pred ccceeecCCCCHHHHHHHH
Q 007661 390 LEVQVEISLPDENGRLQIL 408 (594)
Q Consensus 390 f~~~i~i~~P~~~~r~~IL 408 (594)
|. .|+++.|++.+. +|.
T Consensus 253 Fv-~I~~dyp~~~E~-~i~ 269 (383)
T PHA02244 253 FA-PIEFDYDEKIEH-LIS 269 (383)
T ss_pred cE-EeeCCCCcHHHH-HHh
Confidence 86 699999984333 444
No 181
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1e-10 Score=127.11 Aligned_cols=89 Identities=19% Similarity=0.275 Sum_probs=71.7
Q ss_pred cccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc---cccccc
Q 007661 500 SRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES---MIGLHE 576 (594)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~---~vG~sE 576 (594)
.+..|..+.++.+.++++-+ +.+..+...+.+-|+|+||+||||||||+||||+|.|++.||+++.||+- |||-.-
T Consensus 150 ~DVAG~dEakeel~EiVdfL-k~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGA 228 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFL-KNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGA 228 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHH-hCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCc
Confidence 34456666666666666543 34556667788999999999999999999999999999999999999986 477666
Q ss_pred chhhhHHHHHHHhhhcC
Q 007661 577 STKCAQIVKVSECQFSG 593 (594)
Q Consensus 577 ~~~~~~ir~~F~~A~~~ 593 (594)
+. +|++|..|++.
T Consensus 229 sR----VRdLF~qAkk~ 241 (596)
T COG0465 229 SR----VRDLFEQAKKN 241 (596)
T ss_pred HH----HHHHHHHhhcc
Confidence 54 99999999974
No 182
>CHL00176 ftsH cell division protein; Validated
Probab=99.05 E-value=1.6e-10 Score=129.04 Aligned_cols=92 Identities=18% Similarity=0.305 Sum_probs=74.2
Q ss_pred ccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc---ccc
Q 007661 497 LERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES---MIG 573 (594)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~---~vG 573 (594)
+.+.++.|..+.+..+.++... ....+.+...+..++.|+|||||||||||++|+++|.+++.||+.+.+++. ++|
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g 258 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVG 258 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhh
Confidence 4455666777766666666554 344556777788899999999999999999999999999999999999876 477
Q ss_pred cccchhhhHHHHHHHhhhcC
Q 007661 574 LHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 574 ~sE~~~~~~ir~~F~~A~~~ 593 (594)
.+... ++++|+.|++.
T Consensus 259 ~~~~~----vr~lF~~A~~~ 274 (638)
T CHL00176 259 VGAAR----VRDLFKKAKEN 274 (638)
T ss_pred hhHHH----HHHHHHHHhcC
Confidence 76665 99999999864
No 183
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.04 E-value=1.3e-10 Score=105.55 Aligned_cols=109 Identities=29% Similarity=0.422 Sum_probs=67.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh------cccch---hHHHHHHHHHHHHhhccccCCCCCcEEE
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS------KFVGE---TEKNIRDLFADAENDQRTRGDQSDLHVI 326 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~------~~~g~---~~~~i~~lf~~a~~~~~~~~~~~~~~Il 326 (594)
+|||+||||||||++|+.+|+.+ ..++..++++.... .|.-. .+..-..+.. ....++++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~-~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~----------a~~~~~il 69 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL-GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVR----------AMRKGGIL 69 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH-TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCT----------THHEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-hcceEEEEeccccccccceeeeeecccccccccccccc----------cccceeEE
Confidence 58999999999999999999999 56666676654332 22110 0000000000 01136799
Q ss_pred EEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc-----------ccC------cEEEEEeeCCcc----cccHHhh
Q 007661 327 IFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE-----------SLN------NVLLIGMTNRKD----MLDEALL 385 (594)
Q Consensus 327 ~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~-----------~~~------~v~vI~~tn~~~----~ld~al~ 385 (594)
+|||++..- ..++..|+..++.-. ... ++.+|+|+|+.+ .++++++
T Consensus 70 ~lDEin~a~-------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~ 136 (139)
T PF07728_consen 70 VLDEINRAP-------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALL 136 (139)
T ss_dssp EESSCGG---------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHH
T ss_pred EECCcccCC-------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHH
Confidence 999999753 345555555555321 111 389999999988 7999999
Q ss_pred CCCCc
Q 007661 386 RPGRL 390 (594)
Q Consensus 386 r~gRf 390 (594)
+ ||
T Consensus 137 ~--Rf 139 (139)
T PF07728_consen 137 D--RF 139 (139)
T ss_dssp T--T-
T ss_pred h--hC
Confidence 8 76
No 184
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.04 E-value=1.9e-09 Score=96.60 Aligned_cols=127 Identities=28% Similarity=0.396 Sum_probs=80.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhCCC--CcEEEecchhhhc--------------ccchhHHHHHHHHHHHHhhcccc
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLNGM--EPKIVNGPEVLSK--------------FVGETEKNIRDLFADAENDQRTR 317 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~~~--~~~~v~~~~l~~~--------------~~g~~~~~i~~lf~~a~~~~~~~ 317 (594)
+..++|+||||||||++++.++..+... .++++++...... .........+.+++.++...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 78 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLK--- 78 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcC---
Confidence 4579999999999999999999998655 4677776654332 22344556777888887754
Q ss_pred CCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHH--HHhhcCccccCcEEEEEeeCC-cccccHHhhCCCCcccee
Q 007661 318 GDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL--LTKIDGVESLNNVLLIGMTNR-KDMLDEALLRPGRLEVQV 394 (594)
Q Consensus 318 ~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~L--l~~ld~~~~~~~v~vI~~tn~-~~~ld~al~r~gRf~~~i 394 (594)
+.+|+|||++.+..... ....... ...........+..+|+++|. ....+..+.+ |++.++
T Consensus 79 -----~~viiiDei~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~ 142 (148)
T smart00382 79 -----PDVLILDEITSLLDAEQ---------EALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRI 142 (148)
T ss_pred -----CCEEEEECCcccCCHHH---------HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEE
Confidence 34999999999863321 1111000 001111123457888999986 3334555554 777777
Q ss_pred ecCCC
Q 007661 395 EISLP 399 (594)
Q Consensus 395 ~i~~P 399 (594)
.+..+
T Consensus 143 ~~~~~ 147 (148)
T smart00382 143 VLLLI 147 (148)
T ss_pred EecCC
Confidence 77654
No 185
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.02 E-value=7.2e-09 Score=104.03 Aligned_cols=130 Identities=21% Similarity=0.124 Sum_probs=88.3
Q ss_pred CcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCC------------cccccHHhhCCCC
Q 007661 322 DLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNR------------KDMLDEALLRPGR 389 (594)
Q Consensus 322 ~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~------------~~~ld~al~r~gR 389 (594)
-|-||||||+|.|-- ..-..++..+.. .---++|.+||+ |.-|+..|+. |
T Consensus 291 VpGVLFIDEvHmLDI----------E~FsFlnrAlEs------e~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--R 352 (450)
T COG1224 291 VPGVLFIDEVHMLDI----------ECFSFLNRALES------ELAPIIILATNRGMTKIRGTDIESPHGIPLDLLD--R 352 (450)
T ss_pred ecceEEEechhhhhH----------HHHHHHHHHhhc------ccCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--h
Confidence 366999999998731 111223332222 122356777776 4457777776 5
Q ss_pred ccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCccc
Q 007661 390 LEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDE 469 (594)
Q Consensus 390 f~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~ 469 (594)
+- .|...+++.++..+|+++..+... ...++..++.|+..-..-+.+--.+|+.-|...|.+|.
T Consensus 353 ll-II~t~py~~~EireIi~iRa~ee~---i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg------------ 416 (450)
T COG1224 353 LL-IISTRPYSREEIREIIRIRAKEED---IELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRG------------ 416 (450)
T ss_pred ee-EEecCCCCHHHHHHHHHHhhhhhc---cccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhC------------
Confidence 43 677788899999999998876533 23456678889888877788888888888888887763
Q ss_pred chhhcchhHHHHHHHhc
Q 007661 470 ESIKVTMDDFLHALYEI 486 (594)
Q Consensus 470 ~~~~vt~~df~~al~~~ 486 (594)
...|..+|+..|..-+
T Consensus 417 -~~~V~~~dVe~a~~lF 432 (450)
T COG1224 417 -SKRVEVEDVERAKELF 432 (450)
T ss_pred -CCeeehhHHHHHHHHH
Confidence 3457778887776554
No 186
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.01 E-value=8.2e-09 Score=115.37 Aligned_cols=103 Identities=19% Similarity=0.278 Sum_probs=62.8
Q ss_pred cEEEEEeeCCc--ccccHHhhCCCCcc---ceeecCC--C-CHHHHHHHHHHHHhccccCCCC--CCcccHHHHHHHc--
Q 007661 367 NVLLIGMTNRK--DMLDEALLRPGRLE---VQVEISL--P-DENGRLQILQIHTNKMKENSFL--APDVNLQELAART-- 434 (594)
Q Consensus 367 ~v~vI~~tn~~--~~ld~al~r~gRf~---~~i~i~~--P-~~~~r~~IL~~~~~~~~~~~~l--~~~~~l~~la~~t-- 434 (594)
++.+|+++|+. ..+|+.|+. ||+ .+++++. | +.+.|.++.+...+....++.+ .++..+.++.+..
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 68899999975 458999988 887 5565543 4 5666766665544433322111 1222334443211
Q ss_pred -C------CCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHH
Q 007661 435 -K------NYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALY 484 (594)
Q Consensus 435 -~------g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~ 484 (594)
. ..+.++|.+++++|...|..+ ....|+.+|+.+|++
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~-------------~~~~I~~ehV~~Ai~ 389 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSS-------------GKVYVTAEHVLKAKK 389 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhc-------------CCceecHHHHHHHHH
Confidence 1 134689999999997666432 234688888888755
No 187
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=2.1e-08 Score=104.77 Aligned_cols=185 Identities=17% Similarity=0.230 Sum_probs=116.0
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCC-----cEEE-
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME-----PKIV- 286 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~-----~~~v- 286 (594)
.-.|++ +.|.+...+.+ ..++..- +-+..+||+||+|+|||++|+.+|+.+.+.. ....
T Consensus 19 P~~~~~--l~Gh~~a~~~L-~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~ 83 (351)
T PRK09112 19 PSENTR--LFGHEEAEAFL-AQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA 83 (351)
T ss_pred CCchhh--ccCcHHHHHHH-HHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC
Confidence 345666 99999988887 6665432 2344799999999999999999999986521 1100
Q ss_pred ----ec-----------chhh--hc-c-c-------chhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCC
Q 007661 287 ----NG-----------PEVL--SK-F-V-------GETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGS 340 (594)
Q Consensus 287 ----~~-----------~~l~--~~-~-~-------g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~ 340 (594)
.| +++. .. + . .-+...+|++-+..... +. .....|++|||+|.+-
T Consensus 84 ~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~-~~---~g~~rVviIDeAd~l~----- 154 (351)
T PRK09112 84 DPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQT-SG---DGNWRIVIIDPADDMN----- 154 (351)
T ss_pred CCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhc-cc---cCCceEEEEEchhhcC-----
Confidence 11 1111 00 0 0 00123445444433322 11 1234599999999984
Q ss_pred CCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCC
Q 007661 341 TRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSF 420 (594)
Q Consensus 341 ~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~ 420 (594)
....+.||..++.. ..+.++|..|+.++.+.+.+++ |. ..+.+++|+.++..++|+.......
T Consensus 155 --------~~aanaLLk~LEEp--p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~---- 217 (351)
T PRK09112 155 --------RNAANAILKTLEEP--PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG---- 217 (351)
T ss_pred --------HHHHHHHHHHHhcC--CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC----
Confidence 22345677777753 3466666677888888899988 55 4899999999999999986321110
Q ss_pred CCCcccHHHHHHHcCCCCH
Q 007661 421 LAPDVNLQELAARTKNYSG 439 (594)
Q Consensus 421 l~~~~~l~~la~~t~g~sg 439 (594)
.++..+..+++.+.|-..
T Consensus 218 -~~~~~~~~i~~~s~G~pr 235 (351)
T PRK09112 218 -SDGEITEALLQRSKGSVR 235 (351)
T ss_pred -CCHHHHHHHHHHcCCCHH
Confidence 123346677777776433
No 188
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=1.1e-08 Score=106.01 Aligned_cols=180 Identities=14% Similarity=0.256 Sum_probs=116.9
Q ss_pred ccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh-
Q 007661 215 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS- 293 (594)
Q Consensus 215 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~- 293 (594)
+|++ |.|.+..++.+ +.++..- +.+..+||+||+|+|||++|+++++.+.+.... -+.+++..
T Consensus 2 ~~~~--i~g~~~~~~~l-~~~~~~~------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~-~~h~D~~~~ 65 (313)
T PRK05564 2 SFHT--IIGHENIKNRI-KNSIIKN------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQ-REYVDIIEF 65 (313)
T ss_pred Chhh--ccCcHHHHHHH-HHHHHcC------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCC-CCCCCeEEe
Confidence 4777 89999988887 6655321 334468999999999999999999987443110 01112211
Q ss_pred -cccc--hhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEE
Q 007661 294 -KFVG--ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLL 370 (594)
Q Consensus 294 -~~~g--~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~v 370 (594)
.+.| -.-..++++.+.+.. .|..+ ...|++||++|.+- ....+.||..++. +..++++
T Consensus 66 ~~~~~~~i~v~~ir~~~~~~~~-~p~~~---~~kv~iI~~ad~m~-------------~~a~naLLK~LEe--pp~~t~~ 126 (313)
T PRK05564 66 KPINKKSIGVDDIRNIIEEVNK-KPYEG---DKKVIIIYNSEKMT-------------EQAQNAFLKTIEE--PPKGVFI 126 (313)
T ss_pred ccccCCCCCHHHHHHHHHHHhc-CcccC---CceEEEEechhhcC-------------HHHHHHHHHHhcC--CCCCeEE
Confidence 0011 123456776665543 23322 34599999999873 3345678888774 4456777
Q ss_pred EEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCH
Q 007661 371 IGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSG 439 (594)
Q Consensus 371 I~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg 439 (594)
|.+|+.++.+-+.++++++ .+++..|+.++....++...... ++..+..++..+.|-.+
T Consensus 127 il~~~~~~~ll~TI~SRc~---~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 127 ILLCENLEQILDTIKSRCQ---IYKLNRLSKEEIEKFISYKYNDI-------KEEEKKSAIAFSDGIPG 185 (313)
T ss_pred EEEeCChHhCcHHHHhhce---eeeCCCcCHHHHHHHHHHHhcCC-------CHHHHHHHHHHcCCCHH
Confidence 7777888999999998444 89999999998888776544321 23345667776666443
No 189
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.99 E-value=1.2e-08 Score=118.45 Aligned_cols=202 Identities=19% Similarity=0.295 Sum_probs=124.1
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCCC---CC-ceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhhc
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIK---HV-KGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSK 294 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~---~~-~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~~ 294 (594)
|.|.+..++.+ ..++.... .|+. .| ..+||+||||||||++|+++++.+. ...++.++++++...
T Consensus 570 viGQ~~ai~~l-~~~i~~~~--------~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~ 640 (857)
T PRK10865 570 VIGQNEAVEAV-SNAIRRSR--------AGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEK 640 (857)
T ss_pred EeCCHHHHHHH-HHHHHHHH--------hcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhh
Confidence 78888888888 45443221 1221 22 3589999999999999999999873 345677888776542
Q ss_pred c------------cchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCc
Q 007661 295 F------------VGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV 362 (594)
Q Consensus 295 ~------------~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~ 362 (594)
. .|..+ ...+..+....| .++|+|||++.+- ..+.+.|+..++.-
T Consensus 641 ~~~~~LiG~~pgy~g~~~---~g~l~~~v~~~p-------~~vLllDEieka~-------------~~v~~~Ll~ile~g 697 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEE---GGYLTEAVRRRP-------YSVILLDEVEKAH-------------PDVFNILLQVLDDG 697 (857)
T ss_pred hhHHHHhCCCCcccccch---hHHHHHHHHhCC-------CCeEEEeehhhCC-------------HHHHHHHHHHHhhC
Confidence 1 12111 111222222222 2499999999763 23455566666421
Q ss_pred ---------cccCcEEEEEeeCCcc-------------------------cccHHhhCCCCccceeecCCCCHHHHHHHH
Q 007661 363 ---------ESLNNVLLIGMTNRKD-------------------------MLDEALLRPGRLEVQVEISLPDENGRLQIL 408 (594)
Q Consensus 363 ---------~~~~~v~vI~~tn~~~-------------------------~ld~al~r~gRf~~~i~i~~P~~~~r~~IL 408 (594)
....+.++|.|||... .+.|+|+. |++..+.|.+++.+...+|+
T Consensus 698 ~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv 775 (857)
T PRK10865 698 RLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIA 775 (857)
T ss_pred ceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHH
Confidence 1123567888998731 13467776 99999999999999999999
Q ss_pred HHHHhcccc----CC-CC-CCcccHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHh
Q 007661 409 QIHTNKMKE----NS-FL-APDVNLQELAARTK--NYSGAELEGVAKSAVSFALNR 456 (594)
Q Consensus 409 ~~~~~~~~~----~~-~l-~~~~~l~~la~~t~--g~sg~dl~~l~~~A~~~a~~r 456 (594)
+..+..+.. .+ .+ .++..+..|+.... .|..+.|+.+++.-....+.+
T Consensus 776 ~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~ 831 (857)
T PRK10865 776 QIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQ 831 (857)
T ss_pred HHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHH
Confidence 887765421 11 11 23334556665322 234677887777766555543
No 190
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.99 E-value=3.2e-10 Score=101.38 Aligned_cols=53 Identities=34% Similarity=0.468 Sum_probs=48.3
Q ss_pred EEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc---cccccchhhhHHHHHHHhhhcC
Q 007661 537 CLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM---IGLHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 537 vLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~---vG~sE~~~~~~ir~~F~~A~~~ 593 (594)
|||+||||||||++|+.+|...+.+|+.++++++. .+++++. ++++|+.|.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~----i~~~~~~~~~~ 56 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQK----IRDFFKKAKKS 56 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHH----HHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccc----ccccccccccc
Confidence 69999999999999999999999999999999996 6667766 99999998764
No 191
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.99 E-value=1.3e-08 Score=116.92 Aligned_cols=134 Identities=23% Similarity=0.236 Sum_probs=91.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh------cc-c----chhHHHHHHHHHHHHhhccccCCCC
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS------KF-V----GETEKNIRDLFADAENDQRTRGDQS 321 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~------~~-~----g~~~~~i~~lf~~a~~~~~~~~~~~ 321 (594)
..+++||.|.||+|||.++.++|+.. +..++.+|.++... .+ . |+....-. -|-.|.+
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~t-G~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~da-pfL~amr--------- 1610 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKT-GKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDA-PFLHAMR--------- 1610 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHh-cCceEEeeccccchHHHHhCCCCCcccCceeEeccc-HHHHHhh---------
Confidence 34689999999999999999999997 67778887765432 11 1 22211111 1222222
Q ss_pred CcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcC------------ccccCcEEEEEeeCCcc------cccHH
Q 007661 322 DLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG------------VESLNNVLLIGMTNRKD------MLDEA 383 (594)
Q Consensus 322 ~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~------------~~~~~~v~vI~~tn~~~------~ld~a 383 (594)
..+++++||++.. .+.++.-|-..+|. +....++.|+||-|+-+ .++.+
T Consensus 1611 ~G~WVlLDEiNLa-------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkS 1677 (4600)
T COG5271 1611 DGGWVLLDEINLA-------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKS 1677 (4600)
T ss_pred cCCEEEeehhhhh-------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHH
Confidence 2459999999853 35567666666663 23356789999988754 38999
Q ss_pred hhCCCCccceeecCCCCHHHHHHHHHHHHh
Q 007661 384 LLRPGRLEVQVEISLPDENGRLQILQIHTN 413 (594)
Q Consensus 384 l~r~gRf~~~i~i~~P~~~~r~~IL~~~~~ 413 (594)
+.. ||. .+.+...+.+....|......
T Consensus 1678 F~n--RFs-vV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1678 FLN--RFS-VVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred Hhh--hhh-eEEecccccchHHHHHHhhCC
Confidence 988 887 578888888888888775543
No 192
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.98 E-value=1.6e-08 Score=117.65 Aligned_cols=201 Identities=20% Similarity=0.292 Sum_probs=126.3
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCC----CCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhhc
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGI----KHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSK 294 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~----~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~~ 294 (594)
|.|.+..++.+ ..++... +.|+ +|...+||+||+|||||++|+++|+.+- ...++.++++++...
T Consensus 511 v~GQ~~ai~~l-~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~ 581 (821)
T CHL00095 511 IIGQDEAVVAV-SKAIRRA--------RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEK 581 (821)
T ss_pred CcChHHHHHHH-HHHHHHH--------hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhcccc
Confidence 88999988888 4544321 1122 2223589999999999999999999883 245667777765431
Q ss_pred ------------ccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCc
Q 007661 295 ------------FVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV 362 (594)
Q Consensus 295 ------------~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~ 362 (594)
|+|..+ ...+.+..... | .+||+|||+|.+. ..+.+.|+..++.-
T Consensus 582 ~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~-p-------~~VvllDeieka~-------------~~v~~~Llq~le~g 638 (821)
T CHL00095 582 HTVSKLIGSPPGYVGYNE--GGQLTEAVRKK-P-------YTVVLFDEIEKAH-------------PDIFNLLLQILDDG 638 (821)
T ss_pred ccHHHhcCCCCcccCcCc--cchHHHHHHhC-C-------CeEEEECChhhCC-------------HHHHHHHHHHhccC
Confidence 233222 12233334332 2 3599999999864 33566677777642
Q ss_pred c---------ccCcEEEEEeeCCccc-------------------------------------ccHHhhCCCCccceeec
Q 007661 363 E---------SLNNVLLIGMTNRKDM-------------------------------------LDEALLRPGRLEVQVEI 396 (594)
Q Consensus 363 ~---------~~~~v~vI~~tn~~~~-------------------------------------ld~al~r~gRf~~~i~i 396 (594)
. ...+.++|.|+|.... ..|.++. |++..|.|
T Consensus 639 ~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F 716 (821)
T CHL00095 639 RLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVF 716 (821)
T ss_pred ceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEe
Confidence 1 2357889999885311 1245555 89999999
Q ss_pred CCCCHHHHHHHHHHHHhcccc----CC--CCCCcccHHHHHHHc--CCCCHHHHHHHHHHHHHHHHH
Q 007661 397 SLPDENGRLQILQIHTNKMKE----NS--FLAPDVNLQELAART--KNYSGAELEGVAKSAVSFALN 455 (594)
Q Consensus 397 ~~P~~~~r~~IL~~~~~~~~~----~~--~l~~~~~l~~la~~t--~g~sg~dl~~l~~~A~~~a~~ 455 (594)
.+.+.++..+|++..++.+.. .+ ...++...+.|++.. ..|-.+.|..+++.-....+.
T Consensus 717 ~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~ 783 (821)
T CHL00095 717 RQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLA 783 (821)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHH
Confidence 999999999999887765321 10 011233356677652 244567777777665554443
No 193
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.98 E-value=3.2e-09 Score=112.65 Aligned_cols=201 Identities=23% Similarity=0.274 Sum_probs=125.3
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecc
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGP 289 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~ 289 (594)
...+|++ |.|-..++.++++.+-. ..+.+..|||.|.+||||.++|++|.+... ..+|+.+||.
T Consensus 240 a~y~f~~--Iig~S~~m~~~~~~akr------------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCa 305 (560)
T COG3829 240 AKYTFDD--IIGESPAMLRVLELAKR------------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCA 305 (560)
T ss_pred cccchhh--hccCCHHHHHHHHHHHh------------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecc
Confidence 4577888 88988888777443321 234566899999999999999999998863 3578899997
Q ss_pred hhhh-------------cccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHH
Q 007661 290 EVLS-------------KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLL 356 (594)
Q Consensus 290 ~l~~-------------~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll 356 (594)
.+.. .|.|....--..+|+.|..+ -||+|||..+. -.+...||
T Consensus 306 AiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG-----------TLFLDEIgemp-------------l~LQaKLL 361 (560)
T COG3829 306 AIPETLLESELFGYEKGAFTGASKGGKPGLFELANGG-----------TLFLDEIGEMP-------------LPLQAKLL 361 (560)
T ss_pred cCCHHHHHHHHhCcCCccccccccCCCCcceeeccCC-----------eEEehhhccCC-------------HHHHHHHH
Confidence 6654 22333322234466666655 99999999874 34556777
Q ss_pred HhhcCc-----cc----cCcEEEEEeeCCcccccHHhhCCCCcc-------ceeecCCCCHHHHHH--------HHHHHH
Q 007661 357 TKIDGV-----ES----LNNVLLIGMTNRKDMLDEALLRPGRLE-------VQVEISLPDENGRLQ--------ILQIHT 412 (594)
Q Consensus 357 ~~ld~~-----~~----~~~v~vI~~tn~~~~ld~al~r~gRf~-------~~i~i~~P~~~~r~~--------IL~~~~ 412 (594)
..++.- .+ .-+|.||+|||+. +-+++. .|+|- ..+.+..|...+|.+ +|+.+.
T Consensus 362 RVLQEkei~rvG~t~~~~vDVRIIAATN~n--L~~~i~-~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s 438 (560)
T COG3829 362 RVLQEKEIERVGGTKPIPVDVRIIAATNRN--LEKMIA-EGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFS 438 (560)
T ss_pred HHHhhceEEecCCCCceeeEEEEEeccCcC--HHHHHh-cCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHH
Confidence 777632 11 2369999999984 222222 23222 256667776666642 233333
Q ss_pred hccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 007661 413 NKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFA 453 (594)
Q Consensus 413 ~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a 453 (594)
+++..+..-.++..+..|.+.-.--+-++|++++.++....
T Consensus 439 ~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v~~~ 479 (560)
T COG3829 439 RRYGRNVKGLSPDALALLLRYDWPGNVRELENVIERAVNLV 479 (560)
T ss_pred HHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHHHHHhcc
Confidence 33332221122233445555444346699999999988533
No 194
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=1.4e-08 Score=106.57 Aligned_cols=183 Identities=19% Similarity=0.224 Sum_probs=117.5
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEE-------
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI------- 285 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~------- 285 (594)
.-.+++ |.|.+..++.+ ..++..- +.+..+||+||+|+||+++|.++|+.+-+.....
T Consensus 15 P~~~~~--iiGq~~~~~~L-~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~ 79 (365)
T PRK07471 15 PRETTA--LFGHAAAEAAL-LDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPP 79 (365)
T ss_pred CCchhh--ccChHHHHHHH-HHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccc
Confidence 345666 89999988877 5555432 2344799999999999999999999984322100
Q ss_pred -------Eec-----------chhhhccc---ch--------hHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhc
Q 007661 286 -------VNG-----------PEVLSKFV---GE--------TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICK 336 (594)
Q Consensus 286 -------v~~-----------~~l~~~~~---g~--------~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~ 336 (594)
-.| +++..-.. +. .-..+|++-+.+... ...+.+.|++|||+|.+-
T Consensus 80 ~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~----~~~~~~kVviIDead~m~- 154 (365)
T PRK07471 80 PTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLT----AAEGGWRVVIVDTADEMN- 154 (365)
T ss_pred cccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcC----cccCCCEEEEEechHhcC-
Confidence 001 11110000 10 123456655554432 123457799999999873
Q ss_pred cCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccc
Q 007661 337 SRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMK 416 (594)
Q Consensus 337 ~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~ 416 (594)
....+.||..++. ...+.++|.+|+.++.+.+.++++++ .+.+++|+.++..++|..+...
T Consensus 155 ------------~~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~SRc~---~i~l~~l~~~~i~~~L~~~~~~-- 215 (365)
T PRK07471 155 ------------ANAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRSRCR---KLRLRPLAPEDVIDALAAAGPD-- 215 (365)
T ss_pred ------------HHHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhccce---EEECCCCCHHHHHHHHHHhccc--
Confidence 3345667777764 33567788899999999999987433 8999999999999999865321
Q ss_pred cCCCCCCcccHHHHHHHcCCCCH
Q 007661 417 ENSFLAPDVNLQELAARTKNYSG 439 (594)
Q Consensus 417 ~~~~l~~~~~l~~la~~t~g~sg 439 (594)
..+..+..++..+.|-.+
T Consensus 216 -----~~~~~~~~l~~~s~Gsp~ 233 (365)
T PRK07471 216 -----LPDDPRAALAALAEGSVG 233 (365)
T ss_pred -----CCHHHHHHHHHHcCCCHH
Confidence 122233567777766444
No 195
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.97 E-value=5.7e-08 Score=92.90 Aligned_cols=165 Identities=18% Similarity=0.263 Sum_probs=114.6
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCC--CcEEEecc
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGM--EPKIVNGP 289 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~--~~~~v~~~ 289 (594)
+.+...+ |.|++.|.+.+++..-... .-.|..+|||+|..|||||+++||+.+++... .++.|+-.
T Consensus 55 ~~i~L~~--l~Gvd~qk~~L~~NT~~F~----------~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~ 122 (287)
T COG2607 55 DPIDLAD--LVGVDRQKEALVRNTEQFA----------EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKE 122 (287)
T ss_pred CCcCHHH--HhCchHHHHHHHHHHHHHH----------cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHH
Confidence 4466777 9999999998865432211 12455789999999999999999999998543 34555555
Q ss_pred hhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCc-c-ccCc
Q 007661 290 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV-E-SLNN 367 (594)
Q Consensus 290 ~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~-~-~~~~ 367 (594)
++. .+-.+++..+.... .-|||+||+.- +..+.-...|-..+||- + ...|
T Consensus 123 dl~---------~Lp~l~~~Lr~~~~-------kFIlFcDDLSF------------e~gd~~yK~LKs~LeG~ve~rP~N 174 (287)
T COG2607 123 DLA---------TLPDLVELLRARPE-------KFILFCDDLSF------------EEGDDAYKALKSALEGGVEGRPAN 174 (287)
T ss_pred HHh---------hHHHHHHHHhcCCc-------eEEEEecCCCC------------CCCchHHHHHHHHhcCCcccCCCe
Confidence 443 34555555554321 34999999763 22233445566667753 3 3458
Q ss_pred EEEEEeeCCcccccH--------------------HhhCCCCccceeecCCCCHHHHHHHHHHHHhccc
Q 007661 368 VLLIGMTNRKDMLDE--------------------ALLRPGRLEVQVEISLPDENGRLQILQIHTNKMK 416 (594)
Q Consensus 368 v~vI~~tn~~~~ld~--------------------al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~ 416 (594)
|++.+|+|+-..|+. .+.-..||...+.|.+++.++-..|+..+.+...
T Consensus 175 Vl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~ 243 (287)
T COG2607 175 VLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFG 243 (287)
T ss_pred EEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcC
Confidence 999999999665431 1222449999999999999999999999988765
No 196
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.96 E-value=2.8e-09 Score=100.06 Aligned_cols=119 Identities=22% Similarity=0.295 Sum_probs=73.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhCC---CCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEc
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLNG---MEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFD 329 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~~---~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iD 329 (594)
|-.++||.||+|||||.+|+++|+.+.. .+++.++++++... ++.+..+..++..+....... ...||+||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~----~~gVVllD 75 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAE----EGGVVLLD 75 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHH----HHTEEEEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeecc----chhhhhhH
Confidence 4457999999999999999999999962 46778898888761 111112222222111000000 01199999
Q ss_pred cchhhhccCCCCCCCCchHHHHHHHHHHhhcCc---------cccCcEEEEEeeCCccc
Q 007661 330 EIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV---------ESLNNVLLIGMTNRKDM 379 (594)
Q Consensus 330 Eid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~---------~~~~~v~vI~~tn~~~~ 379 (594)
|||.+.+...... ......+.+.||..+++- -+..++++|+|+|--..
T Consensus 76 EidKa~~~~~~~~--~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 76 EIDKAHPSNSGGA--DVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp TGGGCSHTTTTCS--HHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred HHhhccccccccc--hhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 9999987622211 123346777788888642 23457899999997543
No 197
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=2.2e-08 Score=103.19 Aligned_cols=184 Identities=17% Similarity=0.215 Sum_probs=119.9
Q ss_pred ccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCc---------EE
Q 007661 215 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEP---------KI 285 (594)
Q Consensus 215 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~---------~~ 285 (594)
.|++ |.|.+..++.+ ++++..- +-+..+||+||+|+||+++|+++|+.+.+... ..
T Consensus 2 ~f~~--iiGq~~~~~~L-~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~ 66 (314)
T PRK07399 2 LFAN--LIGQPLAIELL-TAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEE 66 (314)
T ss_pred cHHH--hCCHHHHHHHH-HHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhccccc
Confidence 4677 99999988877 6666433 22347999999999999999999998743320 01
Q ss_pred Eecchhhhcc-----cch--------------------hHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCC
Q 007661 286 VNGPEVLSKF-----VGE--------------------TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGS 340 (594)
Q Consensus 286 v~~~~l~~~~-----~g~--------------------~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~ 340 (594)
.+.|++.--+ .|. .-..+|++.+.+... |.. +...|++||++|.+-
T Consensus 67 ~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~-p~~---~~~kVvII~~ae~m~----- 137 (314)
T PRK07399 67 GNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRP-PLE---APRKVVVIEDAETMN----- 137 (314)
T ss_pred CCCCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccC-ccc---CCceEEEEEchhhcC-----
Confidence 1222222100 011 123466665555442 222 234599999999873
Q ss_pred CCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCC
Q 007661 341 TRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSF 420 (594)
Q Consensus 341 ~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~ 420 (594)
....+.||..|+... +.++|..|+.++.|-|.+++++. .++|+.|+.++..++|+......
T Consensus 138 --------~~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~SRcq---~i~f~~l~~~~~~~~L~~~~~~~----- 198 (314)
T PRK07399 138 --------EAAANALLKTLEEPG---NGTLILIAPSPESLLPTIVSRCQ---IIPFYRLSDEQLEQVLKRLGDEE----- 198 (314)
T ss_pred --------HHHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHhhce---EEecCCCCHHHHHHHHHHhhccc-----
Confidence 234567888877543 44677788899999999998443 89999999999999998653211
Q ss_pred CCCcccHHHHHHHcCCCCHHHH
Q 007661 421 LAPDVNLQELAARTKNYSGAEL 442 (594)
Q Consensus 421 l~~~~~l~~la~~t~g~sg~dl 442 (594)
..+.+...++....|-.+.-+
T Consensus 199 -~~~~~~~~l~~~a~Gs~~~al 219 (314)
T PRK07399 199 -ILNINFPELLALAQGSPGAAI 219 (314)
T ss_pred -cchhHHHHHHHHcCCCHHHHH
Confidence 112235778888877544443
No 198
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=7.6e-09 Score=115.57 Aligned_cols=198 Identities=20% Similarity=0.347 Sum_probs=129.2
Q ss_pred CccCcHHHHHHHHHHHHHccCCChhhhhhcCC----CCCceEEEEcCCCCcHHHHHHHHHHhhCC--CCcEEEecchhhh
Q 007661 220 GIGGLSAEFADIFRRAFASRVFPPHVTSKLGI----KHVKGMLLYGPPGTGKTLMARQIGKMLNG--MEPKIVNGPEVLS 293 (594)
Q Consensus 220 ~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~----~~~~giLL~GppGtGKT~lar~ia~~l~~--~~~~~v~~~~l~~ 293 (594)
.|.|.+..++.+ .+++.. .+.|+ +|...+||.||+|+|||.+|+++|..+-+ ..++.+++++++.
T Consensus 492 rViGQd~AV~av-s~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E 562 (786)
T COG0542 492 RVIGQDEAVEAV-SDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME 562 (786)
T ss_pred ceeChHHHHHHH-HHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH
Confidence 389999998888 444432 22233 23346888999999999999999999943 5678899999887
Q ss_pred ------------cccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcC
Q 007661 294 ------------KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG 361 (594)
Q Consensus 294 ------------~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~ 361 (594)
.|+|..+. ..+-+..++. | .+||+||||+.- +..+++-||..||.
T Consensus 563 kHsVSrLIGaPPGYVGyeeG--G~LTEaVRr~-P-------ySViLlDEIEKA-------------HpdV~nilLQVlDd 619 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYEEG--GQLTEAVRRK-P-------YSVILLDEIEKA-------------HPDVFNLLLQVLDD 619 (786)
T ss_pred HHHHHHHhCCCCCCceeccc--cchhHhhhcC-C-------CeEEEechhhhc-------------CHHHHHHHHHHhcC
Confidence 35554441 1223333333 2 469999999974 45688999999984
Q ss_pred cc---------ccCcEEEEEeeCCccc----------------------------ccHHhhCCCCccceeecCCCCHHHH
Q 007661 362 VE---------SLNNVLLIGMTNRKDM----------------------------LDEALLRPGRLEVQVEISLPDENGR 404 (594)
Q Consensus 362 ~~---------~~~~v~vI~~tn~~~~----------------------------ld~al~r~gRf~~~i~i~~P~~~~r 404 (594)
-. ...|.++|.|+|--.. ..|.++. |++..|.|.+.+.+..
T Consensus 620 GrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l 697 (786)
T COG0542 620 GRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVL 697 (786)
T ss_pred CeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHH
Confidence 21 2236789998875210 1355655 8999999999999999
Q ss_pred HHHHHHHHhccccCCC---C---CCcccHHHHHHHcC--CCCHHHHHHHHHHHHH
Q 007661 405 LQILQIHTNKMKENSF---L---APDVNLQELAARTK--NYSGAELEGVAKSAVS 451 (594)
Q Consensus 405 ~~IL~~~~~~~~~~~~---l---~~~~~l~~la~~t~--g~sg~dl~~l~~~A~~ 451 (594)
.+|+...+..+...-. + .++.-.+.|++... .|-.+-|..+++.-..
T Consensus 698 ~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~ 752 (786)
T COG0542 698 ERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIE 752 (786)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHH
Confidence 9999987765442110 0 12222345555443 3445556555554443
No 199
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.94 E-value=1.2e-08 Score=112.28 Aligned_cols=165 Identities=16% Similarity=0.170 Sum_probs=91.9
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEE---Eecchhhhcccc
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI---VNGPEVLSKFVG 297 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~---v~~~~l~~~~~g 297 (594)
|-|.+..+..++-.++--- .+..-....+...-+|||+|+||||||++||++++......+.. .++..+......
T Consensus 205 i~G~~~~k~~l~l~l~gg~--~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 205 IYGHEDIKKAILLLLFGGV--HKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred ccCcHHHHHHHHHHHhCCC--ccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 7777776655533222110 01111111223334799999999999999999999874332111 011112111000
Q ss_pred hh---HHHHH-HHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc----------
Q 007661 298 ET---EKNIR-DLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE---------- 363 (594)
Q Consensus 298 ~~---~~~i~-~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~---------- 363 (594)
+. +..++ ..+..| ...+++|||+|.+-+ .....|++.|+.-.
T Consensus 283 ~~~~g~~~~~~G~l~~A-----------~~Gil~iDEi~~l~~-------------~~q~~L~e~me~~~i~i~k~G~~~ 338 (509)
T smart00350 283 DPETREFTLEGGALVLA-----------DNGVCCIDEFDKMDD-------------SDRTAIHEAMEQQTISIAKAGITT 338 (509)
T ss_pred ccCcceEEecCccEEec-----------CCCEEEEechhhCCH-------------HHHHHHHHHHhcCEEEEEeCCEEE
Confidence 00 00000 000111 123999999999742 23344555553211
Q ss_pred -ccCcEEEEEeeCCcc-------------cccHHhhCCCCccceee-cCCCCHHHHHHHHHHHHh
Q 007661 364 -SLNNVLLIGMTNRKD-------------MLDEALLRPGRLEVQVE-ISLPDENGRLQILQIHTN 413 (594)
Q Consensus 364 -~~~~v~vI~~tn~~~-------------~ld~al~r~gRf~~~i~-i~~P~~~~r~~IL~~~~~ 413 (594)
-..++.|||++|+.+ .|++++++ |||..+. .+.|+.+...+|.+..+.
T Consensus 339 ~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 339 TLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 124689999999853 48999999 9987544 477899999998887543
No 200
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=1.5e-08 Score=104.91 Aligned_cols=159 Identities=19% Similarity=0.241 Sum_probs=105.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEE---------------Eecchhhhccc-----chhHHHHHHHHHHHH
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI---------------VNGPEVLSKFV-----GETEKNIRDLFADAE 311 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~---------------v~~~~l~~~~~-----g~~~~~i~~lf~~a~ 311 (594)
+.+..+||+||+|+|||++|+++|+.+.+..... -+-+++..-.. .-.-..+|++.+.+.
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~ 99 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVV 99 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHh
Confidence 3456799999999999999999999986532100 01111111000 113457777776665
Q ss_pred hhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCcc
Q 007661 312 NDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLE 391 (594)
Q Consensus 312 ~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~ 391 (594)
... .. +...|++||++|.+- ....+.||..++. +..++++|.+|+.++.|.|.++++++
T Consensus 100 ~~~-~~---~~~kv~iI~~a~~m~-------------~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~SRc~-- 158 (328)
T PRK05707 100 QTA-QL---GGRKVVLIEPAEAMN-------------RNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKSRCQ-- 158 (328)
T ss_pred hcc-cc---CCCeEEEECChhhCC-------------HHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHhhce--
Confidence 432 21 224599999999984 3456778888775 34688899999999999999998444
Q ss_pred ceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCH
Q 007661 392 VQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSG 439 (594)
Q Consensus 392 ~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg 439 (594)
.+.|++|+.++..+.|+..... ..+.+...++..+.|-.+
T Consensus 159 -~~~~~~~~~~~~~~~L~~~~~~-------~~~~~~~~~l~la~Gsp~ 198 (328)
T PRK05707 159 -QQACPLPSNEESLQWLQQALPE-------SDERERIELLTLAGGSPL 198 (328)
T ss_pred -eeeCCCcCHHHHHHHHHHhccc-------CChHHHHHHHHHcCCCHH
Confidence 6999999999888888754311 123344566677776444
No 201
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.93 E-value=9.7e-09 Score=106.74 Aligned_cols=174 Identities=21% Similarity=0.189 Sum_probs=100.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhhccc-----chhH-------HHHHHHHHHHHhhccccC
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFV-----GETE-------KNIRDLFADAENDQRTRG 318 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~~~~-----g~~~-------~~i~~lf~~a~~~~~~~~ 318 (594)
...+|||+|++||||+++|++|..... ..+++.++|..+..... |... ..-...|+.|.
T Consensus 21 ~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~------- 93 (329)
T TIGR02974 21 LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERAD------- 93 (329)
T ss_pred CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCC-------
Confidence 346799999999999999999987653 35788999986532111 1000 00011233332
Q ss_pred CCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc---------ccCcEEEEEeeCCcc-------cccH
Q 007661 319 DQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE---------SLNNVLLIGMTNRKD-------MLDE 382 (594)
Q Consensus 319 ~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~---------~~~~v~vI~~tn~~~-------~ld~ 382 (594)
..+||||||+.|. ..+...|+..++.-. ...++.+|++|+..- .+.+
T Consensus 94 ----gGtL~Ldei~~L~-------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~ 156 (329)
T TIGR02974 94 ----GGTLFLDELATAS-------------LLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRA 156 (329)
T ss_pred ----CCEEEeCChHhCC-------------HHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHH
Confidence 2399999999985 234445555554211 124689999998641 1334
Q ss_pred HhhCCCCccceeecCCCCHHHH----HHHHHHHHhcccc----CC-CCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 007661 383 ALLRPGRLEVQVEISLPDENGR----LQILQIHTNKMKE----NS-FLAPDVNLQELAARTKNYSGAELEGVAKSAVSFA 453 (594)
Q Consensus 383 al~r~gRf~~~i~i~~P~~~~r----~~IL~~~~~~~~~----~~-~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a 453 (594)
.|.. |+. .+.+.+|...+| ..+++.++.+... .. .-.++..+..|.....--+.++|+++++.|+..+
T Consensus 157 dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 157 DLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 4544 553 234555554444 3444444443321 11 1123334566666655557799999999888654
No 202
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.93 E-value=4.6e-09 Score=109.61 Aligned_cols=139 Identities=24% Similarity=0.317 Sum_probs=87.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh--cccchhHHHHH----HHHHHHHhhccccCCCCCcEEE
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS--KFVGETEKNIR----DLFADAENDQRTRGDQSDLHVI 326 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~--~~~g~~~~~i~----~lf~~a~~~~~~~~~~~~~~Il 326 (594)
..+++||.||||||||++|+++|..++ .++..++|...+. ...|....... ..|.... .|-..... +++
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~-~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~--gpl~~~~~--~il 116 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALG-LPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVP--GPLFAAVR--VIL 116 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhC-CCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEec--CCcccccc--eEE
Confidence 346899999999999999999999995 6677777764433 11222211111 0000000 01111111 399
Q ss_pred EEccchhhhccCCCCCCCCchHHHHHHHHHHhhcC----------ccccCcEEEEEeeCCc-----ccccHHhhCCCCcc
Q 007661 327 IFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG----------VESLNNVLLIGMTNRK-----DMLDEALLRPGRLE 391 (594)
Q Consensus 327 ~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~----------~~~~~~v~vI~~tn~~-----~~ld~al~r~gRf~ 391 (594)
++|||+... ..+.+.|+..|+. +.-...++||+|.|+. ..+++++++ ||.
T Consensus 117 l~DEInra~-------------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~ 181 (329)
T COG0714 117 LLDEINRAP-------------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFL 181 (329)
T ss_pred EEeccccCC-------------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEE
Confidence 999999864 2355666666664 3334568889988953 347999998 998
Q ss_pred ceeecCCC-CHHHHHHHHHHH
Q 007661 392 VQVEISLP-DENGRLQILQIH 411 (594)
Q Consensus 392 ~~i~i~~P-~~~~r~~IL~~~ 411 (594)
..+.++.| ++++...++...
T Consensus 182 ~~~~v~yp~~~~e~~~i~~~~ 202 (329)
T COG0714 182 LRIYVDYPDSEEEERIILARV 202 (329)
T ss_pred EEEecCCCCchHHHHHHHHhC
Confidence 89999999 455555554433
No 203
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.93 E-value=1.1e-08 Score=106.41 Aligned_cols=195 Identities=20% Similarity=0.174 Sum_probs=112.0
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhhc----
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSK---- 294 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~~---- 294 (594)
+.|-+..++++++.+-... +...+|||+|++||||+++|+++..... ..+++.++|..+...
T Consensus 8 liG~S~~~~~~~~~i~~~a------------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~ 75 (326)
T PRK11608 8 LLGEANSFLEVLEQVSRLA------------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDS 75 (326)
T ss_pred cEECCHHHHHHHHHHHHHh------------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHH
Confidence 7778888887744433221 3446899999999999999999987653 457889999875321
Q ss_pred -ccchhH-------HHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc--c
Q 007661 295 -FVGETE-------KNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE--S 364 (594)
Q Consensus 295 -~~g~~~-------~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~--~ 364 (594)
.+|... ......|+.+.. -.|||||+|.+.. .+...|+..++.-. .
T Consensus 76 ~lfg~~~~~~~g~~~~~~g~l~~a~g-----------GtL~l~~i~~L~~-------------~~Q~~L~~~l~~~~~~~ 131 (326)
T PRK11608 76 ELFGHEAGAFTGAQKRHPGRFERADG-----------GTLFLDELATAPM-------------LVQEKLLRVIEYGELER 131 (326)
T ss_pred HHccccccccCCcccccCCchhccCC-----------CeEEeCChhhCCH-------------HHHHHHHHHHhcCcEEe
Confidence 111100 000112233322 3899999999852 24445555554211 1
Q ss_pred -------cCcEEEEEeeCCc-------ccccHHhhCCCCc-cceeecCCCCH--HHHHHHHHHHHhccccC----C-CCC
Q 007661 365 -------LNNVLLIGMTNRK-------DMLDEALLRPGRL-EVQVEISLPDE--NGRLQILQIHTNKMKEN----S-FLA 422 (594)
Q Consensus 365 -------~~~v~vI~~tn~~-------~~ld~al~r~gRf-~~~i~i~~P~~--~~r~~IL~~~~~~~~~~----~-~l~ 422 (594)
..++.+|++|+.. ..+.+.|.. || ...|++|+..+ ++...+++.++..+... . .-.
T Consensus 132 ~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~ 209 (326)
T PRK11608 132 VGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGF 209 (326)
T ss_pred CCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 1258889988763 124455554 55 33455444422 33344555554433211 0 012
Q ss_pred CcccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 007661 423 PDVNLQELAARTKNYSGAELEGVAKSAVSFA 453 (594)
Q Consensus 423 ~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a 453 (594)
+...+..|.....--+-++|+++++.|...+
T Consensus 210 s~~al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 210 TERARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred CHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 2334556666655557799999999987644
No 204
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=3.8e-08 Score=97.55 Aligned_cols=103 Identities=31% Similarity=0.526 Sum_probs=69.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh-cccchhHHH-HHHHHHHHHhhccccCCCCCcEEEEEccch
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS-KFVGETEKN-IRDLFADAENDQRTRGDQSDLHVIIFDEID 332 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~-~~~g~~~~~-i~~lf~~a~~~~~~~~~~~~~~Il~iDEid 332 (594)
.+|||.||+|||||+||+.+|+.++ .++..-++..+.. .|+|+.-.+ +..+++.|...-... ..-||+|||||
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~Ln-VPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rA----erGIIyIDEID 172 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILN-VPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERA----ERGIIYIDEID 172 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhC-CCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHH----hCCeEEEechh
Confidence 4799999999999999999999995 6666667777664 789986555 455555443221110 11299999999
Q ss_pred hhhccCCCCCCCCch-HHHHHHHHHHhhcCc
Q 007661 333 AICKSRGSTRDGTGV-HDSIVNQLLTKIDGV 362 (594)
Q Consensus 333 ~l~~~~~~~~~~~~~-~~~~v~~Ll~~ld~~ 362 (594)
.+..+.+..+-...+ ..-+...||..++|-
T Consensus 173 KIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 173 KIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred hhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 999776432221122 234566788888763
No 205
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.91 E-value=9.4e-09 Score=107.32 Aligned_cols=202 Identities=22% Similarity=0.215 Sum_probs=119.6
Q ss_pred cccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC---CCCcEEEecch
Q 007661 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---GMEPKIVNGPE 290 (594)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~---~~~~~~v~~~~ 290 (594)
-.+.+ +.|-+...+++.+++-. +. +...+||++|++||||+++|++|..... ..+++.+||..
T Consensus 75 ~~~~~--LIG~~~~~~~~~eqik~---~a---------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~ 140 (403)
T COG1221 75 EALDD--LIGESPSLQELREQIKA---YA---------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAA 140 (403)
T ss_pred hhhhh--hhccCHHHHHHHHHHHh---hC---------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHH
Confidence 34555 88888888888444333 11 3456899999999999999999985442 35788999988
Q ss_pred hhhc-------------ccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHH
Q 007661 291 VLSK-------------FVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLT 357 (594)
Q Consensus 291 l~~~-------------~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~ 357 (594)
+... |.| ....-..+|+.|..+ +||+|||+.+.+. ....|+.
T Consensus 141 ~~en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG-----------tLfLDEI~~LP~~-------------~Q~kLl~ 195 (403)
T COG1221 141 YSENLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG-----------TLFLDEIHRLPPE-------------GQEKLLR 195 (403)
T ss_pred hCcCHHHHHHhccccceeec-ccCCcCchheecCCC-----------EEehhhhhhCCHh-------------HHHHHHH
Confidence 7653 222 222334455666554 9999999998642 3445666
Q ss_pred hhcCc-----c----ccCcEEEEEeeCCcccccHHhhC-----CCCccceeecCCCCH--HHHHHHHHHHHhccccCCCC
Q 007661 358 KIDGV-----E----SLNNVLLIGMTNRKDMLDEALLR-----PGRLEVQVEISLPDE--NGRLQILQIHTNKMKENSFL 421 (594)
Q Consensus 358 ~ld~~-----~----~~~~v~vI~~tn~~~~ld~al~r-----~gRf~~~i~i~~P~~--~~r~~IL~~~~~~~~~~~~l 421 (594)
.||.- . ...+|.+|++|+-. ++.+++. +-|+...|++|+..+ +++..+++..++.+......
T Consensus 196 ~le~g~~~rvG~~~~~~~dVRli~AT~~~--l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~ 273 (403)
T COG1221 196 VLEEGEYRRVGGSQPRPVDVRLICATTED--LEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGL 273 (403)
T ss_pred HHHcCceEecCCCCCcCCCceeeeccccC--HHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCC
Confidence 66641 1 12368999998752 3333322 004555555555433 33334444444433322111
Q ss_pred CCcc----cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Q 007661 422 APDV----NLQELAARTKNYSGAELEGVAKSAVSFALNR 456 (594)
Q Consensus 422 ~~~~----~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r 456 (594)
.... .+..|-....--+-++|+++++.++..+...
T Consensus 274 ~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~~~~ 312 (403)
T COG1221 274 PLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQASGE 312 (403)
T ss_pred CCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHhccc
Confidence 1111 2333333332236799999999999877543
No 206
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.91 E-value=1.2e-08 Score=105.62 Aligned_cols=170 Identities=24% Similarity=0.363 Sum_probs=114.2
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEec---
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNG--- 288 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~--- 288 (594)
.++.|.- +.|.+.-+..++..++ .| .-.|+|+-|+.||||||++|+++..|....++. .|
T Consensus 12 ~~~pf~a--ivGqd~lk~aL~l~av-----~P---------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~-gc~f~ 74 (423)
T COG1239 12 ENLPFTA--IVGQDPLKLALGLNAV-----DP---------QIGGALIAGEKGTAKSTLARALADLLPEIEVVI-GCPFN 74 (423)
T ss_pred hccchhh--hcCchHHHHHHhhhhc-----cc---------ccceeEEecCCCccHHHHHHHHHHhCCccceec-CCCCC
Confidence 3677887 9999987666644333 22 235899999999999999999999986433221 22
Q ss_pred ----------ch-------------------hhhcccchhHHH------HHHHHH-HHHhhccccCCCCCcEEEEEccch
Q 007661 289 ----------PE-------------------VLSKFVGETEKN------IRDLFA-DAENDQRTRGDQSDLHVIIFDEID 332 (594)
Q Consensus 289 ----------~~-------------------l~~~~~g~~~~~------i~~lf~-~a~~~~~~~~~~~~~~Il~iDEid 332 (594)
.+ +++.-.|.++.+ +.+..+ ..+..+|...+..+.-|++|||+.
T Consensus 75 cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvn 154 (423)
T COG1239 75 CDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVN 154 (423)
T ss_pred CCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccc
Confidence 11 111223344442 122222 222234444445555699999999
Q ss_pred hhhccCCCCCCCCchHHHHHHHHHHhhcC-----------ccccCcEEEEEeeCCcc-cccHHhhCCCCccceeecCCC-
Q 007661 333 AICKSRGSTRDGTGVHDSIVNQLLTKIDG-----------VESLNNVLLIGMTNRKD-MLDEALLRPGRLEVQVEISLP- 399 (594)
Q Consensus 333 ~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~-----------~~~~~~v~vI~~tn~~~-~ld~al~r~gRf~~~i~i~~P- 399 (594)
.|. +++++.||+.+.. +....++++|||+|+-+ .|-|.|+. ||...+.+..|
T Consensus 155 lL~-------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~ 219 (423)
T COG1239 155 LLD-------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPL 219 (423)
T ss_pred ccc-------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCC
Confidence 874 5677777777653 12334799999999864 48888988 99999999998
Q ss_pred CHHHHHHHHHHHHh
Q 007661 400 DENGRLQILQIHTN 413 (594)
Q Consensus 400 ~~~~r~~IL~~~~~ 413 (594)
+.++|.+|.+....
T Consensus 220 ~~~~rv~Ii~r~~~ 233 (423)
T COG1239 220 DLEERVEIIRRRLA 233 (423)
T ss_pred CHHHHHHHHHHHHH
Confidence 68999999986554
No 207
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.89 E-value=2.3e-08 Score=111.71 Aligned_cols=138 Identities=22% Similarity=0.281 Sum_probs=87.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhhCCC-CcEEEecchhhhcccchhHHHHHHHHHHHHhh----ccccCCCCCcEEEEEc
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKMLNGM-EPKIVNGPEVLSKFVGETEKNIRDLFADAEND----QRTRGDQSDLHVIIFD 329 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l~~~-~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~----~~~~~~~~~~~Il~iD 329 (594)
.+|||.|+||||||++|+++++.+... +++.+.........+|.. .+....... .+.........+||+|
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i-----dl~~~~~~g~~~~~~G~L~~A~~GvL~lD 91 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI-----DVEESLAGGQRVTQPGLLDEAPRGVLYVD 91 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch-----hhhhhhhcCcccCCCCCeeeCCCCcEecc
Confidence 479999999999999999999987543 355555322222223321 111111111 0000011112399999
Q ss_pred cchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc-----------ccCcEEEEEeeCCcc---cccHHhhCCCCccceee
Q 007661 330 EIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE-----------SLNNVLLIGMTNRKD---MLDEALLRPGRLEVQVE 395 (594)
Q Consensus 330 Eid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~-----------~~~~v~vI~~tn~~~---~ld~al~r~gRf~~~i~ 395 (594)
|++.+- ..+.+.|+..|+.-. ...++.||+++|..+ .+.++|.. ||..++.
T Consensus 92 Ei~rl~-------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~ 156 (589)
T TIGR02031 92 MANLLD-------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVS 156 (589)
T ss_pred chhhCC-------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeee
Confidence 999974 345566666665211 124689999998865 58899988 9998887
Q ss_pred cCC-CCHHHHHHHHHHHH
Q 007661 396 ISL-PDENGRLQILQIHT 412 (594)
Q Consensus 396 i~~-P~~~~r~~IL~~~~ 412 (594)
+.. |+.++|.+|++...
T Consensus 157 ~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 157 LEDVASQDLRVEIVRRER 174 (589)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 765 47788999998765
No 208
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.89 E-value=2e-08 Score=111.69 Aligned_cols=206 Identities=19% Similarity=0.219 Sum_probs=117.4
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecch
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPE 290 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~ 290 (594)
...|++ +.|-+..++++++.+-... ....+|||+|++||||+++|++|..... ..+++.++|..
T Consensus 192 ~~~~~~--liG~s~~~~~~~~~~~~~a------------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~ 257 (534)
T TIGR01817 192 SGKEDG--IIGKSPAMRQVVDQARVVA------------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAA 257 (534)
T ss_pred cCccCc--eEECCHHHHHHHHHHHHHh------------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCC
Confidence 456666 8898888888844433221 3445799999999999999999998763 45788999987
Q ss_pred hhhcccchhHHHHHHHHHHHHh-------hccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc
Q 007661 291 VLSKFVGETEKNIRDLFADAEN-------DQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE 363 (594)
Q Consensus 291 l~~~~~g~~~~~i~~lf~~a~~-------~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~ 363 (594)
+..... -..+|...+. ..+.........+|||||++.+.+ .+...|+..++.-.
T Consensus 258 ~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~-------------~~Q~~Ll~~l~~~~ 318 (534)
T TIGR01817 258 LSETLL------ESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISP-------------AFQAKLLRVLQEGE 318 (534)
T ss_pred CCHHHH------HHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCH-------------HHHHHHHHHHhcCc
Confidence 633211 1122211100 000000111233999999999852 23445555554211
Q ss_pred --c-------cCcEEEEEeeCCcc-c------ccHHhhCCCCcc-ceeecCCCC--HHHHHHHHHHHHhccccC---CCC
Q 007661 364 --S-------LNNVLLIGMTNRKD-M------LDEALLRPGRLE-VQVEISLPD--ENGRLQILQIHTNKMKEN---SFL 421 (594)
Q Consensus 364 --~-------~~~v~vI~~tn~~~-~------ld~al~r~gRf~-~~i~i~~P~--~~~r~~IL~~~~~~~~~~---~~l 421 (594)
. ..++.+|++|+..- . +.+.|.. |+. ..|.+|+.. .++...|++.++++.... ..-
T Consensus 319 ~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~ 396 (534)
T TIGR01817 319 FERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLT 396 (534)
T ss_pred EEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCC
Confidence 1 12588999887641 1 1222222 332 345555443 244445556555543211 012
Q ss_pred CCcccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 007661 422 APDVNLQELAARTKNYSGAELEGVAKSAVSFA 453 (594)
Q Consensus 422 ~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a 453 (594)
.++..+..|.....--+.++|+++++.|...+
T Consensus 397 ~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 397 ITPSAIRVLMSCKWPGNVRELENCLERTATLS 428 (534)
T ss_pred CCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 23344666666665557899999999988654
No 209
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.89 E-value=1.9e-08 Score=111.05 Aligned_cols=200 Identities=21% Similarity=0.193 Sum_probs=116.4
Q ss_pred ccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhh
Q 007661 215 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVL 292 (594)
Q Consensus 215 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~ 292 (594)
.+.+ +.|.+..++++++.+-.. ...+.+|||+|++||||+++|++|..... ..+++.+||..+.
T Consensus 185 ~~~~--iig~s~~~~~~~~~i~~~------------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~ 250 (509)
T PRK05022 185 KEGE--MIGQSPAMQQLKKEIEVV------------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALP 250 (509)
T ss_pred cCCc--eeecCHHHHHHHHHHHHH------------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCC
Confidence 4454 888888888884433221 13456899999999999999999998753 3578889998764
Q ss_pred hcc-----cchhH-------HHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhc
Q 007661 293 SKF-----VGETE-------KNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKID 360 (594)
Q Consensus 293 ~~~-----~g~~~-------~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld 360 (594)
... +|... ..-...|+.+.. ..|||||||.|.+ .+...|+..++
T Consensus 251 ~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~g-----------GtL~ldeI~~L~~-------------~~Q~~Ll~~l~ 306 (509)
T PRK05022 251 ESLAESELFGHVKGAFTGAISNRSGKFELADG-----------GTLFLDEIGELPL-------------ALQAKLLRVLQ 306 (509)
T ss_pred hHHHHHHhcCccccccCCCcccCCcchhhcCC-----------CEEEecChhhCCH-------------HHHHHHHHHHh
Confidence 321 11000 000012333322 3899999999852 23445555554
Q ss_pred Ccc---------ccCcEEEEEeeCCcc-------cccHHhhCCCCccceeecCCCCHHHHH----HHHHHHHhcccc---
Q 007661 361 GVE---------SLNNVLLIGMTNRKD-------MLDEALLRPGRLEVQVEISLPDENGRL----QILQIHTNKMKE--- 417 (594)
Q Consensus 361 ~~~---------~~~~v~vI~~tn~~~-------~ld~al~r~gRf~~~i~i~~P~~~~r~----~IL~~~~~~~~~--- 417 (594)
.-. ...++.+|++|+..- .+.+.|.. |+. .+.|.+|...+|. .+++.++++...
T Consensus 307 ~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~ 383 (509)
T PRK05022 307 YGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLG 383 (509)
T ss_pred cCCEeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcC
Confidence 211 113689999998741 12333322 332 2445555554443 344444443321
Q ss_pred -CCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 007661 418 -NSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALN 455 (594)
Q Consensus 418 -~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~ 455 (594)
...-.+...+..|.....--+.++|+++++.|+..+..
T Consensus 384 ~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 384 LRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLARA 422 (509)
T ss_pred CCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhcCC
Confidence 11122333466666666556789999999999876643
No 210
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.88 E-value=2e-09 Score=102.45 Aligned_cols=46 Identities=39% Similarity=0.616 Sum_probs=34.1
Q ss_pred cccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 216 LQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 216 ~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
|++ |.|++..+..+ .-+.. | ..++||+||||||||++|+.+...+.
T Consensus 2 f~d--I~GQe~aKrAL-~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 2 FSD--IVGQEEAKRAL-EIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp TCC--SSSTHHHHHHH-HHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred hhh--hcCcHHHHHHH-HHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 666 99999988877 33322 2 24899999999999999999998874
No 211
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.88 E-value=5.4e-08 Score=97.60 Aligned_cols=192 Identities=17% Similarity=0.235 Sum_probs=108.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhC--------CCCcEEEecchhhh--------------cc-----cchhHHHHH
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLN--------GMEPKIVNGPEVLS--------------KF-----VGETEKNIR 304 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~--------~~~~~~v~~~~l~~--------------~~-----~g~~~~~i~ 304 (594)
..+.++||+|++|.|||++++.+++... ..+++.+..+.-.+ -| ....+..+.
T Consensus 59 ~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~ 138 (302)
T PF05621_consen 59 HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVL 138 (302)
T ss_pred cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHH
Confidence 3455899999999999999999997652 12444554432111 00 111122233
Q ss_pred HHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCC--ccc--c
Q 007661 305 DLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNR--KDM--L 380 (594)
Q Consensus 305 ~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~--~~~--l 380 (594)
.+++... +.+|+|||+|.++..... ..+.+++.| ..+.+.-++-+|+.... ... -
T Consensus 139 ~llr~~~-----------vrmLIIDE~H~lLaGs~~------~qr~~Ln~L----K~L~NeL~ipiV~vGt~~A~~al~~ 197 (302)
T PF05621_consen 139 RLLRRLG-----------VRMLIIDEFHNLLAGSYR------KQREFLNAL----KFLGNELQIPIVGVGTREAYRALRT 197 (302)
T ss_pred HHHHHcC-----------CcEEEeechHHHhcccHH------HHHHHHHHH----HHHhhccCCCeEEeccHHHHHHhcc
Confidence 3333332 339999999998732211 122333332 22223334444444332 222 3
Q ss_pred cHHhhCCCCccceeecCCC-CHHHHHHHHHHHHhccccCC--CCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Q 007661 381 DEALLRPGRLEVQVEISLP-DENGRLQILQIHTNKMKENS--FLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQ 457 (594)
Q Consensus 381 d~al~r~gRf~~~i~i~~P-~~~~r~~IL~~~~~~~~~~~--~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~ 457 (594)
|+.+.+ ||+. +.+|.- ..++-..+|..+-+.++... .+....-...|-..+.|..| ++..++..|+..|++.
T Consensus 198 D~QLa~--RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~s- 272 (302)
T PF05621_consen 198 DPQLAS--RFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRS- 272 (302)
T ss_pred CHHHHh--ccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhc-
Confidence 788877 8874 455544 23455667777766655221 12222223566778888766 8889999999999874
Q ss_pred cCcccCCCCcccchhhcchhHHHH
Q 007661 458 LSMDDLTKPVDEESIKVTMDDFLH 481 (594)
Q Consensus 458 ~~~~~~~~~~~~~~~~vt~~df~~ 481 (594)
+...|+.+.+..
T Consensus 273 ------------G~E~It~~~l~~ 284 (302)
T PF05621_consen 273 ------------GEERITREILDK 284 (302)
T ss_pred ------------CCceecHHHHhh
Confidence 344566666643
No 212
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.88 E-value=3.6e-08 Score=112.92 Aligned_cols=200 Identities=24% Similarity=0.288 Sum_probs=118.2
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecch
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPE 290 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~ 290 (594)
+..|++ +.|.+..++.+++.+-... ....+|||+|++|||||++|++|..... +.+++.++|..
T Consensus 372 n~~~~~--liG~S~~~~~~~~~~~~~a------------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~ 437 (686)
T PRK15429 372 DSEFGE--IIGRSEAMYSVLKQVEMVA------------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 437 (686)
T ss_pred cccccc--eeecCHHHHHHHHHHHHHh------------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEeccc
Confidence 356666 8888888888744433221 2345899999999999999999998653 45788899976
Q ss_pred hhhc-----ccch--------hHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHH
Q 007661 291 VLSK-----FVGE--------TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLT 357 (594)
Q Consensus 291 l~~~-----~~g~--------~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~ 357 (594)
+... .+|. .... ...|+.+..+ +|||||++.+. ..+...|+.
T Consensus 438 ~~~~~~~~~lfg~~~~~~~g~~~~~-~g~le~a~~G-----------tL~Ldei~~L~-------------~~~Q~~L~~ 492 (686)
T PRK15429 438 MPAGLLESDLFGHERGAFTGASAQR-IGRFELADKS-----------SLFLDEVGDMP-------------LELQPKLLR 492 (686)
T ss_pred CChhHhhhhhcCcccccccccccch-hhHHHhcCCC-----------eEEEechhhCC-------------HHHHHHHHH
Confidence 5321 1111 1111 1234444332 99999999974 234445555
Q ss_pred hhcCcc---------ccCcEEEEEeeCCcc--cc-----cHHhhCCCCccceeecCCCCHHHHHH----HHHHHHhcccc
Q 007661 358 KIDGVE---------SLNNVLLIGMTNRKD--ML-----DEALLRPGRLEVQVEISLPDENGRLQ----ILQIHTNKMKE 417 (594)
Q Consensus 358 ~ld~~~---------~~~~v~vI~~tn~~~--~l-----d~al~r~gRf~~~i~i~~P~~~~r~~----IL~~~~~~~~~ 417 (594)
.++.-. ...++.+|++|+..- .+ .+.|.. |+. .+.|.+|...+|.+ +++.++++...
T Consensus 493 ~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~ 569 (686)
T PRK15429 493 VLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPEDIPLLVKAFTFKIAR 569 (686)
T ss_pred HHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHH
Confidence 554211 124688999998741 11 222221 222 34566666655543 44444444321
Q ss_pred ----CCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 007661 418 ----NSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFAL 454 (594)
Q Consensus 418 ----~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~ 454 (594)
...-.+...+..|.....--+.++|+++++.|...+-
T Consensus 570 ~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~~~ 610 (686)
T PRK15429 570 RMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTR 610 (686)
T ss_pred HcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCC
Confidence 1111233446666666655677999999999986543
No 213
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.88 E-value=2.7e-09 Score=107.58 Aligned_cols=86 Identities=20% Similarity=0.271 Sum_probs=64.6
Q ss_pred ccCcceeccchhhHHHHHHHHHHHHHHhcCCC---cceEEEeecCCCCchHHHHHHHHhh-------cCCCEEEEecccc
Q 007661 501 RLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGS---PLVTCLLEGPSGSGKTALAATAGID-------SDFPFVKIISAES 570 (594)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~gvLL~GPpG~GKT~lAkalA~~-------~~~~fi~v~~~e~ 570 (594)
.+.|+..++..+.+++.|......... .+.. ...++|||||||||||++|+++|.+ ...+|+.++.+++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~-~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l 85 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKE-EGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADL 85 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHh
Confidence 356777777788888887766533332 2322 3357899999999999999999976 3458888888887
Q ss_pred c---cccccchhhhHHHHHHHhhh
Q 007661 571 M---IGLHESTKCAQIVKVSECQF 591 (594)
Q Consensus 571 ~---vG~sE~~~~~~ir~~F~~A~ 591 (594)
. +|+++.. ++++|++|.
T Consensus 86 ~~~~~g~~~~~----~~~~~~~a~ 105 (261)
T TIGR02881 86 VGEYIGHTAQK----TREVIKKAL 105 (261)
T ss_pred hhhhccchHHH----HHHHHHhcc
Confidence 4 8888876 999999875
No 214
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.87 E-value=1e-07 Score=103.45 Aligned_cols=205 Identities=18% Similarity=0.264 Sum_probs=129.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhC---------CCCcEEEecchhhh----------cccchhH------HHHHHHHHHH
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLN---------GMEPKIVNGPEVLS----------KFVGETE------KNIRDLFADA 310 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~---------~~~~~~v~~~~l~~----------~~~g~~~------~~i~~lf~~a 310 (594)
.+.+.|-||||||..++.+.+.|. ...++.+|+-.+.+ .+.|+.. ..+..-|.
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~-- 501 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFT-- 501 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhc--
Confidence 588999999999999999998663 33456677765544 2222211 12222222
Q ss_pred HhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhC--CC
Q 007661 311 ENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLR--PG 388 (594)
Q Consensus 311 ~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r--~g 388 (594)
.......++||+|||+|.|+.+. +.++..+..+.. ....+++||+.+|..+....-|-. ..
T Consensus 502 -----~~k~~~~~~VvLiDElD~Lvtr~----------QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsS 564 (767)
T KOG1514|consen 502 -----VPKPKRSTTVVLIDELDILVTRS----------QDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSS 564 (767)
T ss_pred -----cCCCCCCCEEEEeccHHHHhccc----------HHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhh
Confidence 22233458899999999999542 345444444422 234579999999987653222210 11
Q ss_pred Ccc-ceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCH--HHHHHHHHHHHHHHHHhccCcccCCC
Q 007661 389 RLE-VQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSG--AELEGVAKSAVSFALNRQLSMDDLTK 465 (594)
Q Consensus 389 Rf~-~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg--~dl~~l~~~A~~~a~~r~~~~~~~~~ 465 (594)
|++ ..|.|.+++.++.++|+...++... ......++-.|+.....+| +....+|++|...|-.+....
T Consensus 565 Rlg~tRi~F~pYth~qLq~Ii~~RL~~~~----~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~----- 635 (767)
T KOG1514|consen 565 RLGLTRICFQPYTHEQLQEIISARLKGLD----AFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKG----- 635 (767)
T ss_pred hccceeeecCCCCHHHHHHHHHHhhcchh----hcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccc-----
Confidence 332 3789999999999999999887763 2223334445555555555 334457999998887765411
Q ss_pred CcccchhhcchhHHHHHHHhcccC
Q 007661 466 PVDEESIKVTMDDFLHALYEIVPA 489 (594)
Q Consensus 466 ~~~~~~~~vt~~df~~al~~~~ps 489 (594)
.......|++-|+.+|+.++..+
T Consensus 636 -k~~~~q~v~~~~v~~Ai~em~~~ 658 (767)
T KOG1514|consen 636 -KLAVSQLVGILHVMEAINEMLAS 658 (767)
T ss_pred -cccccceeehHHHHHHHHHHhhh
Confidence 11334568999999999988543
No 215
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.87 E-value=1.5e-08 Score=107.95 Aligned_cols=156 Identities=20% Similarity=0.243 Sum_probs=88.0
Q ss_pred CccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCC-CcEEEecch-hhhcccc
Q 007661 220 GIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGM-EPKIVNGPE-VLSKFVG 297 (594)
Q Consensus 220 ~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~-~~~~v~~~~-l~~~~~g 297 (594)
+|.|.++.++.++.-+ -...++||+||||||||++|++++...... ++....+.- ......|
T Consensus 21 ~i~gre~vI~lll~aa----------------lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG 84 (498)
T PRK13531 21 GLYERSHAIRLCLLAA----------------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 84 (498)
T ss_pred hccCcHHHHHHHHHHH----------------ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcC
Confidence 4788888777663322 234589999999999999999999986422 233222220 1111122
Q ss_pred hh-HHHH--HHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc--------ccC
Q 007661 298 ET-EKNI--RDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE--------SLN 366 (594)
Q Consensus 298 ~~-~~~i--~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~--------~~~ 366 (594)
.. -... ..-|..... |.-....++|+|||+.+. ..+.+.||..|+.-. ..+
T Consensus 85 ~l~i~~~~~~g~f~r~~~-----G~L~~A~lLfLDEI~ras-------------p~~QsaLLeam~Er~~t~g~~~~~lp 146 (498)
T PRK13531 85 PLSIQALKDEGRYQRLTS-----GYLPEAEIVFLDEIWKAG-------------PAILNTLLTAINERRFRNGAHEEKIP 146 (498)
T ss_pred cHHHhhhhhcCchhhhcC-----CccccccEEeecccccCC-------------HHHHHHHHHHHHhCeEecCCeEEeCC
Confidence 11 0000 111111111 110012399999998653 346667777774211 112
Q ss_pred cEEEEEeeCCccc---ccHHhhCCCCccceeecCCCC-HHHHHHHHHHH
Q 007661 367 NVLLIGMTNRKDM---LDEALLRPGRLEVQVEISLPD-ENGRLQILQIH 411 (594)
Q Consensus 367 ~v~vI~~tn~~~~---ld~al~r~gRf~~~i~i~~P~-~~~r~~IL~~~ 411 (594)
.-+++++||.... ..+++.. ||...+.+|.|+ .++-.+||...
T Consensus 147 ~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 147 MRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 2345555575322 3357877 898899999996 56667788653
No 216
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.86 E-value=1.9e-08 Score=111.06 Aligned_cols=201 Identities=16% Similarity=0.186 Sum_probs=114.2
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecc
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGP 289 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~ 289 (594)
....|++ +.|-+..++++++.+-... .....|||+|++||||+++|+++..... ..+++.++|.
T Consensus 199 ~~~~f~~--~ig~s~~~~~~~~~~~~~A------------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca 264 (520)
T PRK10820 199 DDSAFSQ--IVAVSPKMRQVVEQARKLA------------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCA 264 (520)
T ss_pred ccccccc--eeECCHHHHHHHHHHHHHh------------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccc
Confidence 4567888 8888888777755543222 1234699999999999999999876542 3577889998
Q ss_pred hhhhcc-----cchhH-------HHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHH
Q 007661 290 EVLSKF-----VGETE-------KNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLT 357 (594)
Q Consensus 290 ~l~~~~-----~g~~~-------~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~ 357 (594)
.+.... +|... ..-..+|+.|.. ..||||||+.+.+ .+...|+.
T Consensus 265 ~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~-----------GtL~LdeI~~L~~-------------~~Q~~Ll~ 320 (520)
T PRK10820 265 SIPDDVVESELFGHAPGAYPNALEGKKGFFEQANG-----------GSVLLDEIGEMSP-------------RMQAKLLR 320 (520)
T ss_pred cCCHHHHHHHhcCCCCCCcCCcccCCCChhhhcCC-----------CEEEEeChhhCCH-------------HHHHHHHH
Confidence 764321 11000 000112333322 3899999999852 23344555
Q ss_pred hhcCc--c-------ccCcEEEEEeeCCc-c-c-----ccHHhhCCCCccceeecCCCCHHHHH----HHHHHHHhcccc
Q 007661 358 KIDGV--E-------SLNNVLLIGMTNRK-D-M-----LDEALLRPGRLEVQVEISLPDENGRL----QILQIHTNKMKE 417 (594)
Q Consensus 358 ~ld~~--~-------~~~~v~vI~~tn~~-~-~-----ld~al~r~gRf~~~i~i~~P~~~~r~----~IL~~~~~~~~~ 417 (594)
.++.- . ...++.+|++|+.+ . . +.+.|.. |+. .+.+.+|...+|. .+++.++++...
T Consensus 321 ~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~ 397 (520)
T PRK10820 321 FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFAD 397 (520)
T ss_pred HHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHH
Confidence 54321 1 12367899988764 1 1 2344443 443 2555555555544 333333333221
Q ss_pred ----CCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 007661 418 ----NSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFA 453 (594)
Q Consensus 418 ----~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a 453 (594)
...-.++..+..|.....--+.++|++++..|...+
T Consensus 398 ~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~~ 437 (520)
T PRK10820 398 EQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQL 437 (520)
T ss_pred HcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC
Confidence 111122233555555544446799999999888654
No 217
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.85 E-value=1.1e-08 Score=116.23 Aligned_cols=205 Identities=16% Similarity=0.181 Sum_probs=116.5
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecch
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPE 290 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~ 290 (594)
..+|++ +.|-+..++++++.+-... +...+|||+|++||||+++|++|.+... ..+++.+||..
T Consensus 321 ~~~~~~--l~g~s~~~~~~~~~~~~~a------------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~ 386 (638)
T PRK11388 321 SHTFDH--MPQDSPQMRRLIHFGRQAA------------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQL 386 (638)
T ss_pred cccccc--eEECCHHHHHHHHHHHHHh------------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCC
Confidence 456777 8888888888755443322 2345799999999999999999998753 35788999986
Q ss_pred hhhcccchhHHHHHHHHHHHH----hhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCc--c-
Q 007661 291 VLSKFVGETEKNIRDLFADAE----NDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV--E- 363 (594)
Q Consensus 291 l~~~~~g~~~~~i~~lf~~a~----~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~--~- 363 (594)
+... ..-.++|.... ...+..........||||||+.+.. .+...|+..++.- .
T Consensus 387 ~~~~------~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~-------------~~Q~~Ll~~l~~~~~~~ 447 (638)
T PRK11388 387 YPDE------ALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSP-------------ELQSALLQVLKTGVITR 447 (638)
T ss_pred CChH------HHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCH-------------HHHHHHHHHHhcCcEEe
Confidence 6321 01112332110 0000000011233999999999852 2334455544421 1
Q ss_pred --c----cCcEEEEEeeCCcccccHHhhCCCCcc-------ceeecCCCCHHHH----HHHHHHHHhccccC---CCCCC
Q 007661 364 --S----LNNVLLIGMTNRKDMLDEALLRPGRLE-------VQVEISLPDENGR----LQILQIHTNKMKEN---SFLAP 423 (594)
Q Consensus 364 --~----~~~v~vI~~tn~~~~ld~al~r~gRf~-------~~i~i~~P~~~~r----~~IL~~~~~~~~~~---~~l~~ 423 (594)
. .-++.+|++|+.. +.. +...|+|. ..+.+.+|...+| ..+++.+++++... ..-.+
T Consensus 448 ~~~~~~~~~~~riI~~t~~~--l~~-~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s 524 (638)
T PRK11388 448 LDSRRLIPVDVRVIATTTAD--LAM-LVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKID 524 (638)
T ss_pred CCCCceEEeeEEEEEeccCC--HHH-HHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcC
Confidence 1 1267899999874 122 22223331 1355556665555 34444554443211 11123
Q ss_pred cccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 007661 424 DVNLQELAARTKNYSGAELEGVAKSAVSFA 453 (594)
Q Consensus 424 ~~~l~~la~~t~g~sg~dl~~l~~~A~~~a 453 (594)
+..+..|.....--+.++|+++++.|...+
T Consensus 525 ~~a~~~L~~y~WPGNvreL~~~l~~~~~~~ 554 (638)
T PRK11388 525 DDALARLVSYRWPGNDFELRSVIENLALSS 554 (638)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHHHhC
Confidence 345666666665567799999999887543
No 218
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=6.9e-08 Score=100.58 Aligned_cols=158 Identities=22% Similarity=0.225 Sum_probs=102.7
Q ss_pred cccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEE----------
Q 007661 216 LQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI---------- 285 (594)
Q Consensus 216 ~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~---------- 285 (594)
|+.+ +||.+..++.+ +.++..- +.+..+||+||+|+||+++|+++++.+.+.....
T Consensus 4 ~~~i-~~~q~~~~~~L-~~~~~~~------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c 69 (329)
T PRK08058 4 WEQL-TALQPVVVKML-QNSIAKN------------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNC 69 (329)
T ss_pred HHHH-HhhHHHHHHHH-HHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHH
Confidence 4441 45588777776 6655321 2344689999999999999999999975332000
Q ss_pred -----Eecchhhh-cccch--hHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHH
Q 007661 286 -----VNGPEVLS-KFVGE--TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLT 357 (594)
Q Consensus 286 -----v~~~~l~~-~~~g~--~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~ 357 (594)
-+.+++.- ...|. .-..++++.+.+... |..+ ...|++|||+|.+- ....+.||.
T Consensus 70 ~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~-~~~~---~~kvviI~~a~~~~-------------~~a~NaLLK 132 (329)
T PRK08058 70 KRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKS-GVES---NKKVYIIEHADKMT-------------ASAANSLLK 132 (329)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhC-Cccc---CceEEEeehHhhhC-------------HHHHHHHHH
Confidence 00111100 00111 124566666555432 2222 24599999999873 335577888
Q ss_pred hhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHH
Q 007661 358 KIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQ 409 (594)
Q Consensus 358 ~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~ 409 (594)
.++. +..++++|.+|+.++.|-+.++++++ .+++..|+.++..+.|+
T Consensus 133 ~LEE--Pp~~~~~Il~t~~~~~ll~TIrSRc~---~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 133 FLEE--PSGGTTAILLTENKHQILPTILSRCQ---VVEFRPLPPESLIQRLQ 179 (329)
T ss_pred HhcC--CCCCceEEEEeCChHhCcHHHHhhce---eeeCCCCCHHHHHHHHH
Confidence 8885 44577788888888999999998555 79999999998877775
No 219
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.83 E-value=4.2e-08 Score=107.72 Aligned_cols=200 Identities=20% Similarity=0.213 Sum_probs=113.2
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEecch
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPE 290 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~~~ 290 (594)
..+|++ +.|.+..++++.+.+-... +...+|||+|++||||+++|++|.+.. ...+++.+||..
T Consensus 208 ~~~f~~--iiG~S~~m~~~~~~i~~~A------------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~ 273 (526)
T TIGR02329 208 RYRLDD--LLGASAPMEQVRALVRLYA------------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGA 273 (526)
T ss_pred ccchhh--eeeCCHHHHHHHHHHHHHh------------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEecccc
Confidence 466887 8899988888843332211 234589999999999999999999765 345788999987
Q ss_pred hhhcc-----cchhH--------HHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHH
Q 007661 291 VLSKF-----VGETE--------KNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLT 357 (594)
Q Consensus 291 l~~~~-----~g~~~--------~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~ 357 (594)
+.... .|..+ ..-..+|+.|..+ .||||||+.|.. .+...|+.
T Consensus 274 l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gG-----------TLfLdeI~~Lp~-------------~~Q~~Ll~ 329 (526)
T TIGR02329 274 IAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRG-----------TLFLDEIGEMPL-------------PLQTRLLR 329 (526)
T ss_pred CChhHHHHHhcCCcccccccccccccccchhhcCCc-----------eEEecChHhCCH-------------HHHHHHHH
Confidence 64321 11100 0011233333332 999999999852 24445555
Q ss_pred hhcCcc---------ccCcEEEEEeeCCcc--cc-----cHHhhCCCCccceeecCCCCHHHH----HHHHHHHHhcccc
Q 007661 358 KIDGVE---------SLNNVLLIGMTNRKD--ML-----DEALLRPGRLEVQVEISLPDENGR----LQILQIHTNKMKE 417 (594)
Q Consensus 358 ~ld~~~---------~~~~v~vI~~tn~~~--~l-----d~al~r~gRf~~~i~i~~P~~~~r----~~IL~~~~~~~~~ 417 (594)
.++.-. ...++.+|++|+..- .+ .+.|.. |+. .+.+.+|...+| ..+++.++++...
T Consensus 330 ~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~ 406 (526)
T TIGR02329 330 VLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLS-ILRIALPPLRERPGDILPLAAEYLVQAAA 406 (526)
T ss_pred HHhcCcEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcC-CcEEeCCCchhchhHHHHHHHHHHHHHHH
Confidence 554211 112568999998741 12 222222 332 244455554444 4455555554432
Q ss_pred CCCC-CCcccHHH-------HHHHcCCCCHHHHHHHHHHHHHHH
Q 007661 418 NSFL-APDVNLQE-------LAARTKNYSGAELEGVAKSAVSFA 453 (594)
Q Consensus 418 ~~~l-~~~~~l~~-------la~~t~g~sg~dl~~l~~~A~~~a 453 (594)
.... .+...+.. |.....--+-++|+++++++...+
T Consensus 407 ~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 407 ALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALEL 450 (526)
T ss_pred HcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 1111 11112222 444444446699999999888653
No 220
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.83 E-value=2.7e-08 Score=109.15 Aligned_cols=199 Identities=21% Similarity=0.269 Sum_probs=112.4
Q ss_pred cccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHh--------h--CCCCc
Q 007661 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKM--------L--NGMEP 283 (594)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~--------l--~~~~~ 283 (594)
.+|++ |.|.+..++++ ++.+... .....+|||+|++||||+++|++|.+. . ...++
T Consensus 216 ~~f~~--iiG~S~~m~~~-~~~i~~~-----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pf 281 (538)
T PRK15424 216 YVLGD--LLGQSPQMEQV-RQTILLY-----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPF 281 (538)
T ss_pred cchhh--eeeCCHHHHHH-HHHHHHH-----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCe
Confidence 45777 88998888888 3333221 123457999999999999999999987 2 34578
Q ss_pred EEEecchhhhcc-----cchhH--------HHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHH
Q 007661 284 KIVNGPEVLSKF-----VGETE--------KNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDS 350 (594)
Q Consensus 284 ~~v~~~~l~~~~-----~g~~~--------~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~ 350 (594)
+.+||..+.... +|..+ ..-..+|+.|..+ .||||||+.|.+ .
T Consensus 282 v~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gG-----------TLfLdeI~~Lp~-------------~ 337 (538)
T PRK15424 282 VAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG-----------TLFLDEIGEMPL-------------P 337 (538)
T ss_pred EEeecccCChhhHHHHhcCCccccccCccccccCCchhccCCC-----------EEEEcChHhCCH-------------H
Confidence 899998764321 11100 0011234444332 999999999852 2
Q ss_pred HHHHHHHhhcCcc---------ccCcEEEEEeeCCcccccHHhhCCCCccc-------eeecCCCCHHHHH----HHHHH
Q 007661 351 IVNQLLTKIDGVE---------SLNNVLLIGMTNRKDMLDEALLRPGRLEV-------QVEISLPDENGRL----QILQI 410 (594)
Q Consensus 351 ~v~~Ll~~ld~~~---------~~~~v~vI~~tn~~~~ld~al~r~gRf~~-------~i~i~~P~~~~r~----~IL~~ 410 (594)
+...|+..++.-. -..++.+|++||.. +...+ ..|+|.. .+.+.+|...+|. .+.+.
T Consensus 338 ~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~--L~~~v-~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~ 414 (538)
T PRK15424 338 LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCD--LEEDV-RQGRFRRDLFYRLSILRLQLPPLRERVADILPLAES 414 (538)
T ss_pred HHHHHHhhhhcCeEEecCCCceeccceEEEEecCCC--HHHHH-hcccchHHHHHHhcCCeecCCChhhchhHHHHHHHH
Confidence 4445555554311 12357899999874 22211 1222221 3455666555553 44455
Q ss_pred HHhcccc--CCCCCCccc------HHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 007661 411 HTNKMKE--NSFLAPDVN------LQELAARTKNYSGAELEGVAKSAVSFA 453 (594)
Q Consensus 411 ~~~~~~~--~~~l~~~~~------l~~la~~t~g~sg~dl~~l~~~A~~~a 453 (594)
++++... +..+.++.- +..|.....--+.++|++++++++..+
T Consensus 415 fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~ 465 (538)
T PRK15424 415 FLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFL 465 (538)
T ss_pred HHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 5544211 111221110 123333333346699999999988643
No 221
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.83 E-value=3.5e-08 Score=113.64 Aligned_cols=135 Identities=21% Similarity=0.188 Sum_probs=88.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhh------hcccchh----HHHHHHHHHHHHhhccccCCCCCc
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL------SKFVGET----EKNIRDLFADAENDQRTRGDQSDL 323 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~------~~~~g~~----~~~i~~lf~~a~~~~~~~~~~~~~ 323 (594)
...+|+.||..+|||.++..+|++. ++.++.+|..+-. +.|+... +-+-.-+.++.+++.
T Consensus 888 ~fP~LiQGpTSSGKTSMI~yla~~t-ghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~Gy--------- 957 (4600)
T COG5271 888 NFPLLIQGPTSSGKTSMILYLARET-GHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGY--------- 957 (4600)
T ss_pred CCcEEEecCCCCCcchHHHHHHHHh-CccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCc---------
Confidence 3469999999999999999999997 6778888765443 3333221 112222334444443
Q ss_pred EEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcC---------ccccCcEEEEEeeCCccc------ccHHhhCCC
Q 007661 324 HVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG---------VESLNNVLLIGMTNRKDM------LDEALLRPG 388 (594)
Q Consensus 324 ~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~---------~~~~~~v~vI~~tn~~~~------ld~al~r~g 388 (594)
+|++||++.-+. ..-+.++.||..-.. +.+..++.++||-|+|-. +..|++.
T Consensus 958 -WIVLDELNLApT----------DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN-- 1024 (4600)
T COG5271 958 -WIVLDELNLAPT----------DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN-- 1024 (4600)
T ss_pred -EEEeeccccCcH----------HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--
Confidence 999999996441 122334444432211 234567888999898753 7888887
Q ss_pred CccceeecCCCCHHHHHHHHHHHH
Q 007661 389 RLEVQVEISLPDENGRLQILQIHT 412 (594)
Q Consensus 389 Rf~~~i~i~~P~~~~r~~IL~~~~ 412 (594)
||- +++|..-.+++...||...+
T Consensus 1025 RFl-E~hFddipedEle~ILh~rc 1047 (4600)
T COG5271 1025 RFL-EMHFDDIPEDELEEILHGRC 1047 (4600)
T ss_pred hhH-hhhcccCcHHHHHHHHhccC
Confidence 775 57777777888888887544
No 222
>PRK04132 replication factor C small subunit; Provisional
Probab=98.82 E-value=9.2e-08 Score=109.12 Aligned_cols=164 Identities=15% Similarity=0.138 Sum_probs=116.5
Q ss_pred EEEEc--CCCCcHHHHHHHHHHhhC----CCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEcc
Q 007661 257 MLLYG--PPGTGKTLMARQIGKMLN----GMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 330 (594)
Q Consensus 257 iLL~G--ppGtGKT~lar~ia~~l~----~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDE 330 (594)
-+..| |++.||||+|+++|+++- ...++.+|+++..+ -..++++.+.+....+..+ ....|+||||
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~--~~~KVvIIDE 638 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGG--ASFKIIFLDE 638 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCC--CCCEEEEEEC
Confidence 34558 999999999999999972 34578888886432 2467777766554443321 1246999999
Q ss_pred chhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHH
Q 007661 331 IDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQI 410 (594)
Q Consensus 331 id~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~ 410 (594)
+|.|- ....+.|+..|+.. ..++.+|++||.++.+.+++++ |. ..+.|+.|+.++..+.|+.
T Consensus 639 aD~Lt-------------~~AQnALLk~lEep--~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 639 ADALT-------------QDAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred cccCC-------------HHHHHHHHHHhhCC--CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHH
Confidence 99984 22456677777743 3578899999999999999998 53 3899999999999988887
Q ss_pred HHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 007661 411 HTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAV 450 (594)
Q Consensus 411 ~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~ 450 (594)
.+++.. ...++..+..++..+.| ..+..-++++.+.
T Consensus 701 I~~~Eg---i~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~ 736 (846)
T PRK04132 701 IAENEG---LELTEEGLQAILYIAEG-DMRRAINILQAAA 736 (846)
T ss_pred HHHhcC---CCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 776432 11345578889988887 4455555555544
No 223
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.82 E-value=5.8e-08 Score=105.81 Aligned_cols=47 Identities=32% Similarity=0.612 Sum_probs=35.8
Q ss_pred cccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
.+|++ |-|.+..++.+ ..+ .....+++|.||||||||++++.++..+
T Consensus 189 ~d~~d--v~Gq~~~~~al-~~a---------------a~~g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 189 LDLKD--IKGQQHAKRAL-EIA---------------AAGGHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CCHHH--hcCcHHHHhhh-hhh---------------ccCCCEEEEEecCCCCHHHHHHHHhccc
Confidence 46777 88888776555 222 2344679999999999999999999765
No 224
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.81 E-value=1.5e-08 Score=94.84 Aligned_cols=112 Identities=24% Similarity=0.361 Sum_probs=68.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhhc-----ccchh-------HHHHHHHHHHHHhhccccC
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSK-----FVGET-------EKNIRDLFADAENDQRTRG 318 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~~-----~~g~~-------~~~i~~lf~~a~~~~~~~~ 318 (594)
.+.+|||+|++||||+++|++|.+... ..+++.++|+.+... .+|.. ...-..+|+.|..+
T Consensus 21 ~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~G----- 95 (168)
T PF00158_consen 21 SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGG----- 95 (168)
T ss_dssp STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTS-----
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccce-----
Confidence 346899999999999999999998763 457889999876432 12211 01122566666665
Q ss_pred CCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcC-----cc----ccCcEEEEEeeCCcccccHHhhCCCC
Q 007661 319 DQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG-----VE----SLNNVLLIGMTNRKDMLDEALLRPGR 389 (594)
Q Consensus 319 ~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~-----~~----~~~~v~vI~~tn~~~~ld~al~r~gR 389 (594)
+||||||+.|.+ .+...|+..++. +. ...++.+|++|+.+ +...+. .|+
T Consensus 96 ------tL~Ld~I~~L~~-------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~--l~~~v~-~g~ 153 (168)
T PF00158_consen 96 ------TLFLDEIEDLPP-------------ELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD--LEELVE-QGR 153 (168)
T ss_dssp ------EEEEETGGGS-H-------------HHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS---HHHHHH-TTS
T ss_pred ------EEeecchhhhHH-------------HHHHHHHHHHhhchhccccccccccccceEEeecCcC--HHHHHH-cCC
Confidence 999999999853 244445555542 11 12379999999974 344333 355
Q ss_pred cc
Q 007661 390 LE 391 (594)
Q Consensus 390 f~ 391 (594)
|.
T Consensus 154 fr 155 (168)
T PF00158_consen 154 FR 155 (168)
T ss_dssp S-
T ss_pred Ch
Confidence 54
No 225
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.81 E-value=5.2e-09 Score=106.60 Aligned_cols=86 Identities=16% Similarity=0.171 Sum_probs=64.2
Q ss_pred cCcceeccchhhHHHHHHHHHHHHHHhcCCC---cceEEEeecCCCCchHHHHHHHHhhcC-------CCEEEEecccc-
Q 007661 502 LNGMVDCGDRHKHIYQRAMLLVEQVKVSKGS---PLVTCLLEGPSGSGKTALAATAGIDSD-------FPFVKIISAES- 570 (594)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~gvLL~GPpG~GKT~lAkalA~~~~-------~~fi~v~~~e~- 570 (594)
+.|+.+++..+.++..+.. ..+...+.+.. |..++||+||||||||++|+++|.... -+|+.++.+++
T Consensus 24 l~Gl~~vk~~i~e~~~~~~-~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 24 LIGLKPVKTRIREIAALLL-VERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred ccCHHHHHHHHHHHHHHHH-HHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 5677788777777777633 33333333433 556899999999999999999987652 37999999887
Q ss_pred --ccccccchhhhHHHHHHHhhhc
Q 007661 571 --MIGLHESTKCAQIVKVSECQFS 592 (594)
Q Consensus 571 --~vG~sE~~~~~~ir~~F~~A~~ 592 (594)
|+|+++.+ ++++|++|..
T Consensus 103 ~~~~g~~~~~----~~~~~~~a~~ 122 (284)
T TIGR02880 103 GQYIGHTAPK----TKEILKRAMG 122 (284)
T ss_pred HhhcccchHH----HHHHHHHccC
Confidence 48988876 8999998853
No 226
>PRK08116 hypothetical protein; Validated
Probab=98.81 E-value=1.7e-08 Score=101.90 Aligned_cols=133 Identities=24% Similarity=0.318 Sum_probs=77.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEecchhhhcccch----hHHHHHHHHHHHHhhccccCCCCCcEEE
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPEVLSKFVGE----TEKNIRDLFADAENDQRTRGDQSDLHVI 326 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~~~l~~~~~g~----~~~~i~~lf~~a~~~~~~~~~~~~~~Il 326 (594)
.+.|++|+|+||||||+||.++++++ .+..+++++.++++..+... ......++++.... .++|
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~----------~dlL 182 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVN----------ADLL 182 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcC----------CCEE
Confidence 34679999999999999999999987 35567788888876643211 11112233333322 2499
Q ss_pred EEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCc-cc----ccHHhhCCCCc---cceeecCC
Q 007661 327 IFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRK-DM----LDEALLRPGRL---EVQVEISL 398 (594)
Q Consensus 327 ~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~-~~----ld~al~r~gRf---~~~i~i~~ 398 (594)
+|||+...- .+++.. .+|...++.... .+..+|.|||.+ +. ++.++.+ |+ ...|.+..
T Consensus 183 viDDlg~e~--------~t~~~~---~~l~~iin~r~~-~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g 248 (268)
T PRK08116 183 ILDDLGAER--------DTEWAR---EKVYNIIDSRYR-KGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEG 248 (268)
T ss_pred EEecccCCC--------CCHHHH---HHHHHHHHHHHH-CCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeC
Confidence 999996521 112233 344444443322 234577777764 33 4556665 53 33566666
Q ss_pred CCHHHHHHHHHHH
Q 007661 399 PDENGRLQILQIH 411 (594)
Q Consensus 399 P~~~~r~~IL~~~ 411 (594)
||. |..+.+..
T Consensus 249 ~d~--R~~~~~ek 259 (268)
T PRK08116 249 KSY--RKEIAKEK 259 (268)
T ss_pred cCh--hHHHHHHH
Confidence 553 55555543
No 227
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.79 E-value=1.2e-07 Score=98.61 Aligned_cols=130 Identities=22% Similarity=0.304 Sum_probs=83.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhCCC-----------------------CcEEEecchhhhcccchhHHHHHHHHHHHHh
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLNGM-----------------------EPKIVNGPEVLSKFVGETEKNIRDLFADAEN 312 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~~~-----------------------~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~ 312 (594)
.+||+||||+|||++|.++|+.+.+. .+..++.++....- -....++++-+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhcc
Confidence 69999999999999999999998532 23334433322210 123334444333322
Q ss_pred hccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccc
Q 007661 313 DQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEV 392 (594)
Q Consensus 313 ~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~ 392 (594)
. +..+...|++|||+|.+-. ...+.++..+.. ...+..+|.+||.++.|-+.++++++
T Consensus 104 ~----~~~~~~kviiidead~mt~-------------~A~nallk~lEe--p~~~~~~il~~n~~~~il~tI~SRc~--- 161 (325)
T COG0470 104 S----PLEGGYKVVIIDEADKLTE-------------DAANALLKTLEE--PPKNTRFILITNDPSKILPTIRSRCQ--- 161 (325)
T ss_pred C----CCCCCceEEEeCcHHHHhH-------------HHHHHHHHHhcc--CCCCeEEEEEcCChhhccchhhhcce---
Confidence 2 1123456999999999852 344566666653 45688899999999999889988444
Q ss_pred eeecCCCCHHHHHHHHH
Q 007661 393 QVEISLPDENGRLQILQ 409 (594)
Q Consensus 393 ~i~i~~P~~~~r~~IL~ 409 (594)
.+.|.+|+.......++
T Consensus 162 ~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 162 RIRFKPPSRLEAIAWLE 178 (325)
T ss_pred eeecCCchHHHHHHHhh
Confidence 67887766555444433
No 228
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.79 E-value=2.3e-07 Score=103.34 Aligned_cols=209 Identities=11% Similarity=0.154 Sum_probs=115.4
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEE-Ee---c
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI-VN---G 288 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~-v~---~ 288 (594)
..++++ +.|.++.++++ +.++..... +..+.+-++|+||||||||++++.+|+++.. .+.. .+ +
T Consensus 80 P~~lde--l~~~~~ki~~l-~~~l~~~~~--------~~~~~~illL~GP~GsGKTTl~~~la~~l~~-~~~Ew~npv~~ 147 (637)
T TIGR00602 80 PETQHE--LAVHKKKIEEV-ETWLKAQVL--------ENAPKRILLITGPSGCGKSTTIKILSKELGI-QVQEWSNPTLP 147 (637)
T ss_pred CCCHHH--hcCcHHHHHHH-HHHHHhccc--------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhh-HHHHHhhhhhh
Confidence 456777 99999999987 766654321 2344456999999999999999999988742 1111 11 1
Q ss_pred chhhhcc------------cchhHHHHHHHHHHHHhhccccC--CCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHH
Q 007661 289 PEVLSKF------------VGETEKNIRDLFADAENDQRTRG--DQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQ 354 (594)
Q Consensus 289 ~~l~~~~------------~g~~~~~i~~lf~~a~~~~~~~~--~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~ 354 (594)
......| +.......++++..+.......+ ......||+|||++.+... + ...+..
T Consensus 148 ~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~---------~~~lq~ 217 (637)
T TIGR00602 148 DFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D---------TRALHE 217 (637)
T ss_pred cccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h---------HHHHHH
Confidence 1000000 11223445555555543211111 1224569999999987632 1 113333
Q ss_pred HHH-hhcCccccCcEEEEEeeCC-cc--------------cccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccC
Q 007661 355 LLT-KIDGVESLNNVLLIGMTNR-KD--------------MLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKEN 418 (594)
Q Consensus 355 Ll~-~ld~~~~~~~v~vI~~tn~-~~--------------~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~ 418 (594)
++. ... ..+.+.+|++++. +. .|.+++++..|.. +|.|++.+.......|+..++.....
T Consensus 218 lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~~E~~~ 293 (637)
T TIGR00602 218 ILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVTIEAKK 293 (637)
T ss_pred HHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHHHhhhhc
Confidence 433 211 1234445554441 21 1336777533433 79999999999888887777653211
Q ss_pred ----CCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHH
Q 007661 419 ----SFLAPDVNLQELAARTKNYSGAELEGVAKSAVS 451 (594)
Q Consensus 419 ----~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~ 451 (594)
..+..+..+..|+....| |++..+..-..
T Consensus 294 ~~~~~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf 326 (637)
T TIGR00602 294 NGEKIKVPKKTSVELLCQGCSG----DIRSAINSLQF 326 (637)
T ss_pred cccccccCCHHHHHHHHHhCCC----hHHHHHHHHHH
Confidence 001123456777775554 66655444333
No 229
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.79 E-value=8.3e-08 Score=98.11 Aligned_cols=65 Identities=29% Similarity=0.421 Sum_probs=41.9
Q ss_pred CccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC-CCCcEEEecchhhh
Q 007661 220 GIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN-GMEPKIVNGPEVLS 293 (594)
Q Consensus 220 ~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~-~~~~~~v~~~~l~~ 293 (594)
|+.|..+..+.. -.+...++. |--..+++||.||||||||.||-++|+++. ..+|..++++++.+
T Consensus 25 GlVGQ~~AReAa--giiv~mIk~-------~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 25 GLVGQEKAREAA--GIIVDMIKE-------GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp TEES-HHHHHHH--HHHHHHHHT-------T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred cccChHHHHHHH--HHHHHHHhc-------ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 789998876654 122222111 223568999999999999999999999994 45677777777766
No 230
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=2.6e-07 Score=96.18 Aligned_cols=236 Identities=19% Similarity=0.258 Sum_probs=146.2
Q ss_pred CccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC----CCCcEEEecchhhh--
Q 007661 220 GIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN----GMEPKIVNGPEVLS-- 293 (594)
Q Consensus 220 ~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~----~~~~~~v~~~~l~~-- 293 (594)
++.|-+.++..+ ++.+... +-.+.+..+.+.|-||||||....-+...+. ....+++||..+..
T Consensus 151 ~l~gRe~e~~~v-~~F~~~h---------le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 151 TLKGRELEMDIV-REFFSLH---------LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CccchHHHHHHH-HHHHHhh---------hhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 478888888777 6665433 3346677899999999999999887765542 22446788875432
Q ss_pred --------cc-----cchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhc
Q 007661 294 --------KF-----VGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKID 360 (594)
Q Consensus 294 --------~~-----~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld 360 (594)
.+ .+.++......|+.-..... .+-++++||+|.|+.+.. .++..|..+ .
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k------~~~llVlDEmD~L~tr~~----------~vLy~lFew-p 283 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSK------FMLLLVLDEMDHLITRSQ----------TVLYTLFEW-P 283 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhccc------ceEEEEechhhHHhhccc----------ceeeeehhc-c
Confidence 11 11122334444544433322 366999999999984322 222222222 2
Q ss_pred CccccCcEEEEEeeCCcccccHHhhC----CCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCC
Q 007661 361 GVESLNNVLLIGMTNRKDMLDEALLR----PGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKN 436 (594)
Q Consensus 361 ~~~~~~~v~vI~~tn~~~~ld~al~r----~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g 436 (594)
. ....++++||.+|..++-|..|-| .+--+..+.|++++.++..+||+..+....... ..+..++-.|+...+
T Consensus 284 ~-lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~--~~~~Aie~~ArKvaa 360 (529)
T KOG2227|consen 284 K-LPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSI--FLNAAIELCARKVAA 360 (529)
T ss_pred c-CCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccc--cchHHHHHHHHHhcc
Confidence 1 233579999999999876654432 334567899999999999999998887655221 123457788888888
Q ss_pred CCHHHHH---HHHHHHHHHHHH--hccCcccCCC-CcccchhhcchhHHHHHHHhc
Q 007661 437 YSGAELE---GVAKSAVSFALN--RQLSMDDLTK-PVDEESIKVTMDDFLHALYEI 486 (594)
Q Consensus 437 ~sg~dl~---~l~~~A~~~a~~--r~~~~~~~~~-~~~~~~~~vt~~df~~al~~~ 486 (594)
-+| |+. .+|+.|...+-. |......+.. ........|..+++..++..+
T Consensus 361 ~SG-DlRkaLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~ 415 (529)
T KOG2227|consen 361 PSG-DLRKALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKV 415 (529)
T ss_pred Cch-hHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhh
Confidence 887 444 467877766643 2221111111 111122456677777777765
No 231
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=7.3e-08 Score=99.95 Aligned_cols=138 Identities=21% Similarity=0.273 Sum_probs=95.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcE--EEec--------------chhhhcc--------------------
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK--IVNG--------------PEVLSKF-------------------- 295 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~--~v~~--------------~~l~~~~-------------------- 295 (594)
+.+..+||+||+|+||+++|+++|+.+.+.... .-.| +++.--.
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 556689999999999999999999998653210 0001 1111000
Q ss_pred --cc---------hhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccc
Q 007661 296 --VG---------ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVES 364 (594)
Q Consensus 296 --~g---------~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~ 364 (594)
.| -.-..+|++.+.+... +..+ ...|++||++|.+- ....|.||..++ ++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~-~~~~---~~kV~iI~~ae~m~-------------~~AaNaLLKtLE--EP 159 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVG-THRG---GARVVVLYPAEALN-------------VAAANALLKTLE--EP 159 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccC-CccC---CceEEEEechhhcC-------------HHHHHHHHHHhc--CC
Confidence 00 1234667766655432 2222 24499999999984 335677888888 45
Q ss_pred cCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHH
Q 007661 365 LNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIH 411 (594)
Q Consensus 365 ~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~ 411 (594)
..++++|.+|++++.|.|.+++ |. ..+.|++|+.++..+.|...
T Consensus 160 p~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 160 PPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 6789999999999999999998 54 38999999999998888743
No 232
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.75 E-value=2.1e-08 Score=96.24 Aligned_cols=56 Identities=27% Similarity=0.398 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccc
Q 007661 513 KHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAE 569 (594)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e 569 (594)
++++.......+..+ ....+..++|||||||||||+||..+|++.+.+|....||.
T Consensus 30 ~~l~~~l~i~i~aa~-~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~ 85 (233)
T PF05496_consen 30 EHLKGNLKILIRAAK-KRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPA 85 (233)
T ss_dssp HHHHHHHHHHHHHHH-CTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC
T ss_pred HHHHhhhHHHHHHHH-hcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchh
Confidence 444544444444432 23456778999999999999999999999999999999875
No 233
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.74 E-value=9.5e-08 Score=100.32 Aligned_cols=209 Identities=25% Similarity=0.301 Sum_probs=120.0
Q ss_pred CccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEecchhhhcccc
Q 007661 220 GIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPEVLSKFVG 297 (594)
Q Consensus 220 ~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~~~l~~~~~g 297 (594)
+|.|......+++++ +..- .+....|||+|.+||||-.+||+|.+.. ...+++.+||+.+.....
T Consensus 224 ~iIG~S~am~~ll~~-i~~V-----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLl- 290 (550)
T COG3604 224 GIIGRSPAMRQLLKE-IEVV-----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLL- 290 (550)
T ss_pred cceecCHHHHHHHHH-HHHH-----------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHH-
Confidence 499999988888543 3211 2345689999999999999999999876 346889999987765321
Q ss_pred hhH--HHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcC-----cccc----C
Q 007661 298 ETE--KNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG-----VESL----N 366 (594)
Q Consensus 298 ~~~--~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~-----~~~~----~ 366 (594)
++| ...+..|.-|...-+.+......-.||+|||-.|.. .+...||..++. +.+. -
T Consensus 291 ESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL-------------~lQaKLLRvLQegEieRvG~~r~ikV 357 (550)
T COG3604 291 ESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPL-------------ALQAKLLRVLQEGEIERVGGDRTIKV 357 (550)
T ss_pred HHHHhcccccccccchhccCcceeecCCCeEechhhccCCH-------------HHHHHHHHHHhhcceeecCCCceeEE
Confidence 111 011222322322222211111223999999988742 244556665552 2221 2
Q ss_pred cEEEEEeeCCcccccHHhhCCCCcc-------ceeecCCCCHHHHH----HHHHHHHhccccC----CCCCCcccHHHHH
Q 007661 367 NVLLIGMTNRKDMLDEALLRPGRLE-------VQVEISLPDENGRL----QILQIHTNKMKEN----SFLAPDVNLQELA 431 (594)
Q Consensus 367 ~v~vI~~tn~~~~ld~al~r~gRf~-------~~i~i~~P~~~~r~----~IL~~~~~~~~~~----~~l~~~~~l~~la 431 (594)
+|.||++||+- |..+++ .|+|- ..+.+.+|...+|. -+-+.+++++... ....+...++.|.
T Consensus 358 DVRiIAATNRD--L~~~V~-~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~ 434 (550)
T COG3604 358 DVRVIAATNRD--LEEMVR-DGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLS 434 (550)
T ss_pred EEEEEeccchh--HHHHHH-cCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHH
Confidence 58999999983 444443 23332 13445555554543 2222333333211 1112233455565
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhcc
Q 007661 432 ARTKNYSGAELEGVAKSAVSFALNRQL 458 (594)
Q Consensus 432 ~~t~g~sg~dl~~l~~~A~~~a~~r~~ 458 (594)
....--+-++|++++++|+..| .+..
T Consensus 435 ~y~wPGNVRELen~veRavlla-~~~~ 460 (550)
T COG3604 435 SYEWPGNVRELENVVERAVLLA-GRLT 460 (550)
T ss_pred cCCCCCcHHHHHHHHHHHHHHh-cccC
Confidence 5554446699999999999988 5443
No 234
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.73 E-value=9.5e-09 Score=107.44 Aligned_cols=55 Identities=25% Similarity=0.422 Sum_probs=48.6
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc----cc-cccchhhhHHHHHHHhhh
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM----IG-LHESTKCAQIVKVSECQF 591 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~----vG-~sE~~~~~~ir~~F~~A~ 591 (594)
+|.++||+||||||||++|++||...+.||+.+++++.+ +| ++|.. +|++|+.|.
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i----~r~l~e~A~ 105 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESM----VRDLTDAAV 105 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHH----HHHHHHHHH
Confidence 568999999999999999999999999999999999774 66 45654 999999984
No 235
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.73 E-value=6.7e-08 Score=102.77 Aligned_cols=198 Identities=24% Similarity=0.269 Sum_probs=117.4
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhhc----
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSK---- 294 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~~---- 294 (594)
+.|-...++++ ++.+... .+..-.||++|++||||-++||+|.+... ..+|+.+||..+...
T Consensus 143 liG~S~am~~l-~~~i~kv-----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ES 210 (464)
T COG2204 143 LVGESPAMQQL-RRLIAKV-----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLES 210 (464)
T ss_pred ceecCHHHHHH-HHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHH
Confidence 88888888888 4433221 13345799999999999999999998763 358899999876542
Q ss_pred -ccchhH-------HHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcC-----
Q 007661 295 -FVGETE-------KNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG----- 361 (594)
Q Consensus 295 -~~g~~~-------~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~----- 361 (594)
.+|... ..-...|+.|..+ .||+|||..+. -.+...||..++.
T Consensus 211 ELFGhekGAFTGA~~~r~G~fE~A~GG-----------TLfLDEI~~mp-------------l~~Q~kLLRvLqe~~~~r 266 (464)
T COG2204 211 ELFGHEKGAFTGAITRRIGRFEQANGG-----------TLFLDEIGEMP-------------LELQVKLLRVLQEREFER 266 (464)
T ss_pred HhhcccccCcCCcccccCcceeEcCCc-----------eEEeeccccCC-------------HHHHHHHHHHHHcCeeEe
Confidence 112110 1112255555554 99999999875 2344556666652
Q ss_pred ccc----cCcEEEEEeeCCcccccHHhhCCCCcc-------ceeecCCCCHHHHH----HHHHHHHhccccCC----CCC
Q 007661 362 VES----LNNVLLIGMTNRKDMLDEALLRPGRLE-------VQVEISLPDENGRL----QILQIHTNKMKENS----FLA 422 (594)
Q Consensus 362 ~~~----~~~v~vI~~tn~~~~ld~al~r~gRf~-------~~i~i~~P~~~~r~----~IL~~~~~~~~~~~----~l~ 422 (594)
+.+ .-+|.||++||+. |...+. .|+|- ..+.+..|...+|. .+++.++++..... .-.
T Consensus 267 vG~~~~i~vdvRiIaaT~~d--L~~~v~-~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~ 343 (464)
T COG2204 267 VGGNKPIKVDVRIIAATNRD--LEEEVA-AGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGF 343 (464)
T ss_pred cCCCcccceeeEEEeecCcC--HHHHHH-cCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCC
Confidence 111 1268999999984 222222 23222 25677777766664 33344444332211 111
Q ss_pred CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Q 007661 423 PDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQ 457 (594)
Q Consensus 423 ~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~ 457 (594)
+...+..|.....--+-++|+++++++...+-...
T Consensus 344 s~~a~~~L~~y~WPGNVREL~N~ver~~il~~~~~ 378 (464)
T COG2204 344 SPEALAALLAYDWPGNVRELENVVERAVILSEGPE 378 (464)
T ss_pred CHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCccc
Confidence 22233444443332345999999999987665443
No 236
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.72 E-value=3.9e-08 Score=100.51 Aligned_cols=60 Identities=28% Similarity=0.359 Sum_probs=46.6
Q ss_pred cCCCcceEEEeecCCCCchHHHHHHHHhhcC--CCEEEEeccccccccccchhhhHHHHHHHhh
Q 007661 529 SKGSPLVTCLLEGPSGSGKTALAATAGIDSD--FPFVKIISAESMIGLHESTKCAQIVKVSECQ 590 (594)
Q Consensus 529 ~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~--~~fi~v~~~e~~vG~sE~~~~~~ir~~F~~A 590 (594)
.+....+++||.||||||||+||-++|.+.| .||+.+.|+|+| -+|-.|-..|-+.|++|
T Consensus 45 ~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy--S~e~kKTE~L~qa~Rra 106 (398)
T PF06068_consen 45 EGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY--SSEVKKTEALTQAFRRA 106 (398)
T ss_dssp TT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG---BTTC-HHHHHHHHHHCS
T ss_pred cccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee--ecccCchHHHHHHHHHh
Confidence 3445568899999999999999999999997 999999999999 45666666799999987
No 237
>CHL00181 cbbX CbbX; Provisional
Probab=98.71 E-value=1.5e-08 Score=103.28 Aligned_cols=86 Identities=17% Similarity=0.168 Sum_probs=63.0
Q ss_pred cCcceeccchhhHHHHHHHHHHHHHHhcCCC---cceEEEeecCCCCchHHHHHHHHhhc-------CCCEEEEecccc-
Q 007661 502 LNGMVDCGDRHKHIYQRAMLLVEQVKVSKGS---PLVTCLLEGPSGSGKTALAATAGIDS-------DFPFVKIISAES- 570 (594)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~gvLL~GPpG~GKT~lAkalA~~~-------~~~fi~v~~~e~- 570 (594)
+.|+..++..+.++..+... .+.....+.. +..++||+||||||||++|+++|.++ .-+|+.++.+++
T Consensus 25 l~Gl~~vK~~i~e~~~~~~~-~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~ 103 (287)
T CHL00181 25 LVGLAPVKTRIREIAALLLI-DRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLV 103 (287)
T ss_pred cCCcHHHHHHHHHHHHHHHH-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHH
Confidence 56777887777777776432 2222333433 34459999999999999999999764 236999998887
Q ss_pred --ccccccchhhhHHHHHHHhhhc
Q 007661 571 --MIGLHESTKCAQIVKVSECQFS 592 (594)
Q Consensus 571 --~vG~sE~~~~~~ir~~F~~A~~ 592 (594)
|+|+++.+ ++++|++|..
T Consensus 104 ~~~~g~~~~~----~~~~l~~a~g 123 (287)
T CHL00181 104 GQYIGHTAPK----TKEVLKKAMG 123 (287)
T ss_pred HHHhccchHH----HHHHHHHccC
Confidence 58988876 8889988753
No 238
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=3e-07 Score=94.75 Aligned_cols=136 Identities=16% Similarity=0.226 Sum_probs=94.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhCCCCcEE---------------Eecchhhhcc--cc--hhHHHHHHHHHHHHhhc
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI---------------VNGPEVLSKF--VG--ETEKNIRDLFADAENDQ 314 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~~~~~~~---------------v~~~~l~~~~--~g--~~~~~i~~lf~~a~~~~ 314 (594)
+..+||+||+|+||+++|+++|+.+.+..... -+.+++..-. .| -....+|++.+.+....
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~ 103 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHA 103 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhcc
Confidence 45799999999999999999999985422100 0112221100 11 13456777766655432
Q ss_pred cccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCcccee
Q 007661 315 RTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQV 394 (594)
Q Consensus 315 ~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i 394 (594)
..+ ...|++||++|.+- ....|.||..++. +..++++|.+|+.++.|.|.++++++ .+
T Consensus 104 -~~g---~~KV~iI~~a~~m~-------------~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~SRC~---~~ 161 (325)
T PRK06871 104 -QQG---GNKVVYIQGAERLT-------------EAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYSRCQ---TW 161 (325)
T ss_pred -ccC---CceEEEEechhhhC-------------HHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHhhce---EE
Confidence 222 23499999999984 3355778888874 55688999999999999999998444 78
Q ss_pred ecCCCCHHHHHHHHHHH
Q 007661 395 EISLPDENGRLQILQIH 411 (594)
Q Consensus 395 ~i~~P~~~~r~~IL~~~ 411 (594)
.|++|+.++..+.|...
T Consensus 162 ~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQ 178 (325)
T ss_pred eCCCCCHHHHHHHHHHH
Confidence 99999999888888754
No 239
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.70 E-value=4e-08 Score=86.06 Aligned_cols=109 Identities=25% Similarity=0.312 Sum_probs=55.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecc-hhh-----hcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEc
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGP-EVL-----SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFD 329 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~-~l~-----~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iD 329 (594)
++||+|+||+|||++|+++|+.+. ..+..|.+. +++ +..+-+.+. ..|+- ...|.. -.|+++|
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~-~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~--~~GPif-----~~ill~D 69 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLG-LSFKRIQFTPDLLPSDILGFPVYDQET---GEFEF--RPGPIF-----TNILLAD 69 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT---EEEEE--TT--HHHHHEEEEEETTT---TEEEE--EE-TT------SSEEEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHcC-CceeEEEecCCCCcccceeeeeeccCC---CeeEe--ecChhh-----hceeeec
Confidence 589999999999999999999985 445555543 322 211111100 00000 000110 1399999
Q ss_pred cchhhhccCCCCCCCCchHHHHHHHHHHhhcCc---------cccCcEEEEEeeCCccc-----ccHHhhCCCCc
Q 007661 330 EIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV---------ESLNNVLLIGMTNRKDM-----LDEALLRPGRL 390 (594)
Q Consensus 330 Eid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~---------~~~~~v~vI~~tn~~~~-----ld~al~r~gRf 390 (594)
||++..++ +.+.||+.|..- .-...++||||.|+.+. |+++++. ||
T Consensus 70 EiNrappk-------------tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 70 EINRAPPK-------------TQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp TGGGS-HH-------------HHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred ccccCCHH-------------HHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 99986543 455666666531 12345899999998763 7888877 66
No 240
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.70 E-value=3.1e-07 Score=99.75 Aligned_cols=125 Identities=26% Similarity=0.417 Sum_probs=76.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhCCCC-cEEEecchhhh------------------c--------ccchhHHHHH
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGME-PKIVNGPEVLS------------------K--------FVGETEKNIR 304 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~~~~-~~~v~~~~l~~------------------~--------~~g~~~~~i~ 304 (594)
....+++|+||||||||++++.++..+.... -..+.+..+.+ - .+|.....-.
T Consensus 208 ~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~p 287 (506)
T PRK09862 208 AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGP 287 (506)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehh
Confidence 3456899999999999999999997763211 01122221111 0 1111100111
Q ss_pred HHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc-----------ccCcEEEEEe
Q 007661 305 DLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE-----------SLNNVLLIGM 373 (594)
Q Consensus 305 ~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~-----------~~~~v~vI~~ 373 (594)
..+..|.++ +||+||++.+- ..++..|++.|+.-. ...++.+|++
T Consensus 288 G~l~~A~gG-----------vLfLDEi~e~~-------------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa 343 (506)
T PRK09862 288 GEISLAHNG-----------VLFLDELPEFE-------------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAA 343 (506)
T ss_pred hHhhhccCC-----------EEecCCchhCC-------------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEe
Confidence 234444443 99999998753 345566666553211 2347899999
Q ss_pred eCCcc---------------------cccHHhhCCCCccceeecCCCCHH
Q 007661 374 TNRKD---------------------MLDEALLRPGRLEVQVEISLPDEN 402 (594)
Q Consensus 374 tn~~~---------------------~ld~al~r~gRf~~~i~i~~P~~~ 402 (594)
+|+.. .|..+++. ||+..++++.|+.+
T Consensus 344 ~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 344 MNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred ecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 99853 36667877 99999999988643
No 241
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.69 E-value=1.7e-08 Score=101.43 Aligned_cols=61 Identities=28% Similarity=0.296 Sum_probs=50.1
Q ss_pred hcCCCcceEEEeecCCCCchHHHHHHHHhhcC--CCEEEEeccccccccccchhhhHHHHHHHhh
Q 007661 528 VSKGSPLVTCLLEGPSGSGKTALAATAGIDSD--FPFVKIISAESMIGLHESTKCAQIVKVSECQ 590 (594)
Q Consensus 528 ~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~--~~fi~v~~~e~~vG~sE~~~~~~ir~~F~~A 590 (594)
+.+....++||+.||||||||+||-++|.+.| .||+++.|+|+|-. |-.|..+|-+.|++|
T Consensus 59 k~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~--E~kKTE~L~qa~Rra 121 (450)
T COG1224 59 KQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSL--EVKKTEALTQALRRA 121 (450)
T ss_pred HhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeee--cccHHHHHHHHHHHh
Confidence 34556678999999999999999999999986 99999999999922 333333599999987
No 242
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.67 E-value=1.1e-07 Score=96.03 Aligned_cols=148 Identities=16% Similarity=0.236 Sum_probs=86.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcE--EEecchhhhcccchhHHHHHHHHHHHHhh------ccccCCCCCc
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK--IVNGPEVLSKFVGETEKNIRDLFADAEND------QRTRGDQSDL 323 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~--~v~~~~l~~~~~g~~~~~i~~lf~~a~~~------~~~~~~~~~~ 323 (594)
...+++||+||+|||||++++.+...+...... .++.+.. .+...++++.+..... .|. ....
T Consensus 31 ~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~---~~k~ 101 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPP---GGKK 101 (272)
T ss_dssp HCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEE---SSSE
T ss_pred HcCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCC---CCcE
Confidence 345789999999999999999988877544422 2333321 1223333333321111 111 2234
Q ss_pred EEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhc---C----ccccCcEEEEEeeCCcc---cccHHhhCCCCccce
Q 007661 324 HVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKID---G----VESLNNVLLIGMTNRKD---MLDEALLRPGRLEVQ 393 (594)
Q Consensus 324 ~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld---~----~~~~~~v~vI~~tn~~~---~ld~al~r~gRf~~~ 393 (594)
.|+||||++.-.+...+. ...-+++.|+++.=. . ...-.++.+||++++.. .|++++.| .|. .
T Consensus 102 lv~fiDDlN~p~~d~ygt----q~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~-i 174 (272)
T PF12775_consen 102 LVLFIDDLNMPQPDKYGT----QPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HFN-I 174 (272)
T ss_dssp EEEEEETTT-S---TTS------HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TEE-E
T ss_pred EEEEecccCCCCCCCCCC----cCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--heE-E
Confidence 699999999866544332 223456666665421 0 12234688999988643 38899998 443 7
Q ss_pred eecCCCCHHHHHHHHHHHHhcc
Q 007661 394 VEISLPDENGRLQILQIHTNKM 415 (594)
Q Consensus 394 i~i~~P~~~~r~~IL~~~~~~~ 415 (594)
+.++.|+.+....|+..++...
T Consensus 175 ~~~~~p~~~sl~~If~~il~~~ 196 (272)
T PF12775_consen 175 LNIPYPSDESLNTIFSSILQSH 196 (272)
T ss_dssp EE----TCCHHHHHHHHHHHHH
T ss_pred EEecCCChHHHHHHHHHHHhhh
Confidence 9999999999999998887654
No 243
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.67 E-value=2.3e-08 Score=113.04 Aligned_cols=66 Identities=24% Similarity=0.371 Sum_probs=56.9
Q ss_pred HHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc---ccccccchhhhHHHHHHHhhhcC
Q 007661 524 EQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES---MIGLHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 524 ~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~---~vG~sE~~~~~~ir~~F~~A~~~ 593 (594)
+.+...+...+.|+||+||||||||++|+++|.+++.+|+.+.+++. ++|.++.+ ++++|+.|++.
T Consensus 175 ~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~----~~~~f~~a~~~ 243 (644)
T PRK10733 175 SRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASR----VRDMFEQAKKA 243 (644)
T ss_pred HHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHH----HHHHHHHHHhc
Confidence 34455566778899999999999999999999999999999999876 48888876 99999999763
No 244
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=3.4e-07 Score=94.21 Aligned_cols=159 Identities=20% Similarity=0.264 Sum_probs=103.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEE------------Eecchhhhc-----ccc------hhHHHHHHHHHH
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI------------VNGPEVLSK-----FVG------ETEKNIRDLFAD 309 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~------------v~~~~l~~~-----~~g------~~~~~i~~lf~~ 309 (594)
-|..+||+||+|+||+++|.++|+.+-+..... -+-+|+.-- ..| -.-..+|++.+.
T Consensus 25 l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~ 104 (319)
T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQK 104 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHH
Confidence 345799999999999999999998884432100 011121100 001 124456766665
Q ss_pred HHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCC
Q 007661 310 AENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGR 389 (594)
Q Consensus 310 a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gR 389 (594)
+... |..+ ...|++||++|.+- ....|.||..++. ...++++|.+|+.++.|-|.++++++
T Consensus 105 ~~~~-p~~g---~~kV~iI~~ae~m~-------------~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrSRCq 165 (319)
T PRK08769 105 LALT-PQYG---IAQVVIVDPADAIN-------------RAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRSRCQ 165 (319)
T ss_pred HhhC-cccC---CcEEEEeccHhhhC-------------HHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHhhhe
Confidence 5443 2222 23599999999984 3355677777774 44578888889999999999999444
Q ss_pred ccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHH
Q 007661 390 LEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAEL 442 (594)
Q Consensus 390 f~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl 442 (594)
.+.|+.|+.++..+.|... . .+..+...++..+.|-.+.-+
T Consensus 166 ---~i~~~~~~~~~~~~~L~~~--~-------~~~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 166 ---RLEFKLPPAHEALAWLLAQ--G-------VSERAAQEALDAARGHPGLAA 206 (319)
T ss_pred ---EeeCCCcCHHHHHHHHHHc--C-------CChHHHHHHHHHcCCCHHHHH
Confidence 7899999998887777632 1 122334566777777655444
No 245
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.67 E-value=1.9e-07 Score=91.73 Aligned_cols=184 Identities=18% Similarity=0.282 Sum_probs=99.8
Q ss_pred cCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCC--cEEEec-chhh----hc
Q 007661 222 GGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME--PKIVNG-PEVL----SK 294 (594)
Q Consensus 222 gGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~--~~~v~~-~~l~----~~ 294 (594)
.|.++++++| .+.+.. .+...++|+||.|+|||++++.+.+.+.... .+++.. .... ..
T Consensus 2 ~gR~~el~~l-~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 67 (234)
T PF01637_consen 2 FGREKELEKL-KELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRS 67 (234)
T ss_dssp -S-HHHHHHH-HHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHH
T ss_pred CCHHHHHHHH-HHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHH
Confidence 4667777777 443321 2346799999999999999999999874321 111111 0000 00
Q ss_pred c------------------------------cchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhh-ccCCCCCC
Q 007661 295 F------------------------------VGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAIC-KSRGSTRD 343 (594)
Q Consensus 295 ~------------------------------~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~-~~~~~~~~ 343 (594)
. .......+..+++....... ..||+|||++.+. ...
T Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-------~~iiviDe~~~~~~~~~----- 135 (234)
T PF01637_consen 68 FIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGK-------KVIIVIDEFQYLAIASE----- 135 (234)
T ss_dssp HHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHC-------CEEEEEETGGGGGBCTT-----
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCC-------cEEEEEecHHHHhhccc-----
Confidence 0 01223445666666555432 2599999999997 211
Q ss_pred CCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccH------HhhCCCCccceeecCCCCHHHHHHHHHHHHhcccc
Q 007661 344 GTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDE------ALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKE 417 (594)
Q Consensus 344 ~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~------al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~ 417 (594)
....++..|...++......++.+|.++........ .+ .+|+.. +.+++.+.++..++++...+.. .
T Consensus 136 ---~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~--~~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~ 208 (234)
T PF01637_consen 136 ---EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPL--FGRFSH-IELKPLSKEEAREFLKELFKEL-I 208 (234)
T ss_dssp ---TTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTT--TT---E-EEE----HHHHHHHHHHHHHCC--
T ss_pred ---chHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCcc--ccccce-EEEeeCCHHHHHHHHHHHHHHh-h
Confidence 124566666666665445566666666655332222 12 246776 9999999999999999887765 2
Q ss_pred CCCCCCcccHHHHHHHcCCCCH
Q 007661 418 NSFLAPDVNLQELAARTKNYSG 439 (594)
Q Consensus 418 ~~~l~~~~~l~~la~~t~g~sg 439 (594)
.. -.++.+++++...+.|..+
T Consensus 209 ~~-~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 209 KL-PFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp ------HHHHHHHHHHHTT-HH
T ss_pred cc-cCCHHHHHHHHHHhCCCHH
Confidence 10 1356788999999988543
No 246
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=4.3e-07 Score=94.42 Aligned_cols=159 Identities=16% Similarity=0.194 Sum_probs=104.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcE---------------EEecchhhhccc-----chhHHHHHHHHHHHH
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK---------------IVNGPEVLSKFV-----GETEKNIRDLFADAE 311 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~---------------~v~~~~l~~~~~-----g~~~~~i~~lf~~a~ 311 (594)
+.+..+||+||+|+||+++|+++|+.+.+.... .-+-||+.--.. .-....+|++-+.+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 345579999999999999999999998542110 001122211110 113446777766655
Q ss_pred hhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCcc
Q 007661 312 NDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLE 391 (594)
Q Consensus 312 ~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~ 391 (594)
... ..+ ...|++||++|.+- ....|.||..++. +..+.++|..|++++.|-|.++++++
T Consensus 102 ~~~-~~g---~~kV~iI~~ae~m~-------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrSRCq-- 160 (334)
T PRK07993 102 EHA-RLG---GAKVVWLPDAALLT-------------DAAANALLKTLEE--PPENTWFFLACREPARLLATLRSRCR-- 160 (334)
T ss_pred hcc-ccC---CceEEEEcchHhhC-------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHhccc--
Confidence 432 222 24599999999984 3456778888884 55689999999999999999998444
Q ss_pred ceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHH
Q 007661 392 VQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGA 440 (594)
Q Consensus 392 ~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~ 440 (594)
.+.+++|+.++..+.|.... . . +..+...++..+.|-.+.
T Consensus 161 -~~~~~~~~~~~~~~~L~~~~---~----~-~~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 161 -LHYLAPPPEQYALTWLSREV---T----M-SQDALLAALRLSAGAPGA 200 (334)
T ss_pred -cccCCCCCHHHHHHHHHHcc---C----C-CHHHHHHHHHHcCCCHHH
Confidence 68999999988887775321 1 1 222345566666664443
No 247
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.64 E-value=2.8e-07 Score=85.92 Aligned_cols=141 Identities=19% Similarity=0.275 Sum_probs=83.7
Q ss_pred CcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEE---Ee-----------c
Q 007661 223 GLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI---VN-----------G 288 (594)
Q Consensus 223 Gl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~---v~-----------~ 288 (594)
|.+..++.+ ..++..- +.|..+||+||+|+||+++|+++++.+-+..... -. .
T Consensus 1 gq~~~~~~L-~~~~~~~------------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~ 67 (162)
T PF13177_consen 1 GQEEIIELL-KNLIKSG------------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH 67 (162)
T ss_dssp S-HHHHHHH-HHHHHCT------------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C
T ss_pred CcHHHHHHH-HHHHHcC------------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC
Confidence 555666555 5544321 3445789999999999999999999884332110 00 1
Q ss_pred chhhhcc-c----chhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc
Q 007661 289 PEVLSKF-V----GETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE 363 (594)
Q Consensus 289 ~~l~~~~-~----g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~ 363 (594)
+++.--. . .-....++++.+.+.... . .+...|++|||+|.+- ....+.||..|+.
T Consensus 68 ~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~-~---~~~~KviiI~~ad~l~-------------~~a~NaLLK~LEe-- 128 (162)
T PF13177_consen 68 PDFIIIKPDKKKKSIKIDQIREIIEFLSLSP-S---EGKYKVIIIDEADKLT-------------EEAQNALLKTLEE-- 128 (162)
T ss_dssp TTEEEEETTTSSSSBSHHHHHHHHHHCTSS--T---TSSSEEEEEETGGGS--------------HHHHHHHHHHHHS--
T ss_pred cceEEEecccccchhhHHHHHHHHHHHHHHH-h---cCCceEEEeehHhhhh-------------HHHHHHHHHHhcC--
Confidence 1111000 0 112356666666554322 2 1335699999999874 4466778888874
Q ss_pred ccCcEEEEEeeCCcccccHHhhCCCCccceeecCC
Q 007661 364 SLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISL 398 (594)
Q Consensus 364 ~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~ 398 (594)
...++.+|.+|+.++.|-+.++++.. .+.++.
T Consensus 129 pp~~~~fiL~t~~~~~il~TI~SRc~---~i~~~~ 160 (162)
T PF13177_consen 129 PPENTYFILITNNPSKILPTIRSRCQ---VIRFRP 160 (162)
T ss_dssp TTTTEEEEEEES-GGGS-HHHHTTSE---EEEE--
T ss_pred CCCCEEEEEEECChHHChHHHHhhce---EEecCC
Confidence 44689999999999999999998332 455544
No 248
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.6e-07 Score=96.67 Aligned_cols=102 Identities=29% Similarity=0.548 Sum_probs=72.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh-cccchh-HHHHHHHHHHHHhhccccCCCCCcEEEEEccch
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS-KFVGET-EKNIRDLFADAENDQRTRGDQSDLHVIIFDEID 332 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~-~~~g~~-~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid 332 (594)
.+|||.||+|+|||+||+.+|+.++ .++.+.+|..+.. .|+|+. |.-+.+++..|..+-.. ...-|+||||+|
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ld-VPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVek----AQqGIVflDEvD 301 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLD-VPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEK----AQQGIVFLDEVD 301 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhC-CCeEEecccchhhcccccccHHHHHHHHHHHccCCHHH----HhcCeEEEehhh
Confidence 4799999999999999999999994 7788899998875 788875 55677777766543111 011299999999
Q ss_pred hhhccCCCCCCCCch-HHHHHHHHHHhhcC
Q 007661 333 AICKSRGSTRDGTGV-HDSIVNQLLTKIDG 361 (594)
Q Consensus 333 ~l~~~~~~~~~~~~~-~~~~v~~Ll~~ld~ 361 (594)
.|..+..+......+ ..-+...||..++|
T Consensus 302 Ki~~~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 302 KITKKAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred hhcccCccccccccccchhHHHHHHHHhcc
Confidence 998654433222122 23456668887775
No 249
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.63 E-value=3.7e-07 Score=86.86 Aligned_cols=135 Identities=21% Similarity=0.303 Sum_probs=80.8
Q ss_pred cccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCC----CcEEEecc
Q 007661 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGM----EPKIVNGP 289 (594)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~----~~~~v~~~ 289 (594)
..+.| |.|-++.++.+ . .+..- | ...++++.|||||||||-+.++|+++-+. -+..+|.+
T Consensus 24 ~~l~d--IVGNe~tv~rl-~-via~~----------g--nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNAS 87 (333)
T KOG0991|consen 24 SVLQD--IVGNEDTVERL-S-VIAKE----------G--NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNAS 87 (333)
T ss_pred hHHHH--hhCCHHHHHHH-H-HHHHc----------C--CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCc
Confidence 34666 99999988877 3 33211 1 22379999999999999999999998442 23345555
Q ss_pred hhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEE
Q 007661 290 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVL 369 (594)
Q Consensus 290 ~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~ 369 (594)
+-.+- +.-++--+.|.+-+-..|. |. -.||++||+|++-.. .+..+. .-|+-. .+...
T Consensus 88 deRGI---DvVRn~IK~FAQ~kv~lp~-gr---hKIiILDEADSMT~g----------AQQAlR---RtMEiy--S~ttR 145 (333)
T KOG0991|consen 88 DERGI---DVVRNKIKMFAQKKVTLPP-GR---HKIIILDEADSMTAG----------AQQALR---RTMEIY--SNTTR 145 (333)
T ss_pred ccccc---HHHHHHHHHHHHhhccCCC-Cc---eeEEEeeccchhhhH----------HHHHHH---HHHHHH--cccch
Confidence 43221 2223334455555444332 22 239999999998411 122222 222211 13456
Q ss_pred EEEeeCCcccccHHhhC
Q 007661 370 LIGMTNRKDMLDEALLR 386 (594)
Q Consensus 370 vI~~tn~~~~ld~al~r 386 (594)
+..++|..+.|-+.+.+
T Consensus 146 FalaCN~s~KIiEPIQS 162 (333)
T KOG0991|consen 146 FALACNQSEKIIEPIQS 162 (333)
T ss_pred hhhhhcchhhhhhhHHh
Confidence 77788888877666666
No 250
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.61 E-value=1.5e-06 Score=89.80 Aligned_cols=52 Identities=21% Similarity=0.376 Sum_probs=39.0
Q ss_pred CccCcHHHHHHHHHHHHHccCCChhhhhhcCC-CCCceEEEEcCCCCcHHHHHHHHHHhhCC
Q 007661 220 GIGGLSAEFADIFRRAFASRVFPPHVTSKLGI-KHVKGMLLYGPPGTGKTLMARQIGKMLNG 280 (594)
Q Consensus 220 ~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~-~~~~giLL~GppGtGKT~lar~ia~~l~~ 280 (594)
.+-|+++.+.+++. .+.... .|. ...+.++|+||||||||++|+++++.+..
T Consensus 52 ~~~G~~~~i~~lv~-~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVN-YFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHH-HHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 39999999998853 333221 122 23467899999999999999999999854
No 251
>PRK08181 transposase; Validated
Probab=98.59 E-value=1.1e-07 Score=95.61 Aligned_cols=102 Identities=23% Similarity=0.408 Sum_probs=63.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEecchhhhcccch-hHHHHHHHHHHHHhhccccCCCCCcEEEEEc
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPEVLSKFVGE-TEKNIRDLFADAENDQRTRGDQSDLHVIIFD 329 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~~~l~~~~~g~-~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iD 329 (594)
...+++|+||||||||+|+.++++++ .+..+.+++.++++...... ......+.++.... +++|+||
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~----------~dLLIID 174 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDK----------FDLLILD 174 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhc----------CCEEEEe
Confidence 44689999999999999999999876 34567778888877654221 11122333333322 4599999
Q ss_pred cchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCc
Q 007661 330 EIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRK 377 (594)
Q Consensus 330 Eid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~ 377 (594)
|++.+... ......+-++++... .. --+|.+||.+
T Consensus 175 Dlg~~~~~--------~~~~~~Lf~lin~R~---~~--~s~IiTSN~~ 209 (269)
T PRK08181 175 DLAYVTKD--------QAETSVLFELISARY---ER--RSILITANQP 209 (269)
T ss_pred ccccccCC--------HHHHHHHHHHHHHHH---hC--CCEEEEcCCC
Confidence 99876422 223334444444322 11 2467777764
No 252
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.59 E-value=4.9e-08 Score=102.23 Aligned_cols=54 Identities=30% Similarity=0.415 Sum_probs=47.4
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc----cc-cccchhhhHHHHHHHhhh
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM----IG-LHESTKCAQIVKVSECQF 591 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~----vG-~sE~~~~~~ir~~F~~A~ 591 (594)
+.++||+||||||||++|++||...+.||+.+++++.+ +| ..|.. +|++|+.|.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~----ir~L~~~A~ 108 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESI----IRDLVEIAV 108 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHH----HHHHHHHHH
Confidence 58999999999999999999999999999999998764 66 33544 999999984
No 253
>PRK12377 putative replication protein; Provisional
Probab=98.57 E-value=1.7e-07 Score=93.08 Aligned_cols=102 Identities=23% Similarity=0.368 Sum_probs=62.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhhcccchhH--HHHHHHHHHHHhhccccCCCCCcEEEEEc
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGETE--KNIRDLFADAENDQRTRGDQSDLHVIIFD 329 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~~~~g~~~--~~i~~lf~~a~~~~~~~~~~~~~~Il~iD 329 (594)
..+++|+||||||||+||.++++.+. +..+.+++.++++........ ....++++... ..++|+||
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~----------~~dLLiID 170 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELC----------KVDLLVLD 170 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhc----------CCCEEEEc
Confidence 36899999999999999999999983 455677777777663321100 01122333322 24599999
Q ss_pred cchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCc
Q 007661 330 EIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRK 377 (594)
Q Consensus 330 Eid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~ 377 (594)
|+..... ++....++.++++.- .....-+|.+||..
T Consensus 171 Dlg~~~~--------s~~~~~~l~~ii~~R----~~~~~ptiitSNl~ 206 (248)
T PRK12377 171 EIGIQRE--------TKNEQVVLNQIIDRR----TASMRSVGMLTNLN 206 (248)
T ss_pred CCCCCCC--------CHHHHHHHHHHHHHH----HhcCCCEEEEcCCC
Confidence 9987531 233445555555441 12234567788864
No 254
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=6.4e-07 Score=92.80 Aligned_cols=137 Identities=20% Similarity=0.284 Sum_probs=90.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEE--Eec--------------chhhhcc-------cc-----hhHHHH
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI--VNG--------------PEVLSKF-------VG-----ETEKNI 303 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~--v~~--------------~~l~~~~-------~g-----~~~~~i 303 (594)
+.+..+||+||+|+|||++|+.+|+.+.+..... ..| +++..-. .| -.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 4556899999999999999999999985421100 001 1111100 01 134567
Q ss_pred HHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHH
Q 007661 304 RDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEA 383 (594)
Q Consensus 304 ~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~a 383 (594)
|++.+.+... |..+ ...|++||+++.+- ....+.|+..++... .+..+|.+|+.++.+.+.
T Consensus 99 R~l~~~~~~~-p~~~---~~kV~iiEp~~~Ld-------------~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~t 159 (325)
T PRK08699 99 REIIDNVYLT-SVRG---GLRVILIHPAESMN-------------LQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPT 159 (325)
T ss_pred HHHHHHHhhC-cccC---CceEEEEechhhCC-------------HHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHH
Confidence 8877777553 2222 24499999999874 234455666666543 356677799999999999
Q ss_pred hhCCCCccceeecCCCCHHHHHHHHHH
Q 007661 384 LLRPGRLEVQVEISLPDENGRLQILQI 410 (594)
Q Consensus 384 l~r~gRf~~~i~i~~P~~~~r~~IL~~ 410 (594)
++++++ .+.|++|+.++..+.|+.
T Consensus 160 i~SRc~---~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 160 IKSRCR---KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHHHhh---hhcCCCCCHHHHHHHHHh
Confidence 988444 788999999988877753
No 255
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.55 E-value=2.9e-07 Score=100.34 Aligned_cols=180 Identities=21% Similarity=0.246 Sum_probs=101.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhhcccchhHHHHHHHHHHHHh-------hccccCCCCCc
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGETEKNIRDLFADAEN-------DQRTRGDQSDL 323 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~-------~~~~~~~~~~~ 323 (594)
...+++++|++||||+++|+++..... ..+++.++|..+..... -..+|..... ..+........
T Consensus 161 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 234 (445)
T TIGR02915 161 SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL------ESELFGYEKGAFTGAVKQTLGKIEYAHG 234 (445)
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH------HHHhcCCCCCCcCCCccCCCCceeECCC
Confidence 345799999999999999999987753 34678899987633211 1122221110 00000001123
Q ss_pred EEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc---------ccCcEEEEEeeCCcc-------cccHHhhCC
Q 007661 324 HVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE---------SLNNVLLIGMTNRKD-------MLDEALLRP 387 (594)
Q Consensus 324 ~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~---------~~~~v~vI~~tn~~~-------~ld~al~r~ 387 (594)
.+|||||++.|.+ .+...|+..++.-. ...++.+|++|+..- .+.+.|..
T Consensus 235 gtl~l~~i~~l~~-------------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~- 300 (445)
T TIGR02915 235 GTLFLDEIGDLPL-------------NLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY- 300 (445)
T ss_pred CEEEEechhhCCH-------------HHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH-
Confidence 4999999999852 23444555543211 112688999988741 12333322
Q ss_pred CCccceeecCCCCHHHHHH----HHHHHHhcccc----CCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 007661 388 GRLEVQVEISLPDENGRLQ----ILQIHTNKMKE----NSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFAL 454 (594)
Q Consensus 388 gRf~~~i~i~~P~~~~r~~----IL~~~~~~~~~----~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~ 454 (594)
|+. .+.+.+|...+|.+ +.+.+++++.. ...-.++..+..|.....--+.++|+++++.|...+-
T Consensus 301 -~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~~ 373 (445)
T TIGR02915 301 -RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAE 373 (445)
T ss_pred -Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 332 34556666655543 44444443321 1111233456666666655677999999999886543
No 256
>PRK06526 transposase; Provisional
Probab=98.54 E-value=1.3e-07 Score=94.48 Aligned_cols=102 Identities=20% Similarity=0.291 Sum_probs=59.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEecchhhhcccch-hHHHHHHHHHHHHhhccccCCCCCcEEEEEc
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPEVLSKFVGE-TEKNIRDLFADAENDQRTRGDQSDLHVIIFD 329 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~~~l~~~~~g~-~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iD 329 (594)
.+.+++|+||||||||++|.+++.++ .+..+.+++.++++...... ....+...+.... .+++|+||
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~----------~~dlLIID 166 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLG----------RYPLLIVD 166 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhc----------cCCEEEEc
Confidence 45689999999999999999999876 34455556666665543211 0111122222211 24599999
Q ss_pred cchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCc
Q 007661 330 EIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRK 377 (594)
Q Consensus 330 Eid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~ 377 (594)
|++.+... .....++.++++... . +..+|.+||.+
T Consensus 167 D~g~~~~~--------~~~~~~L~~li~~r~---~--~~s~IitSn~~ 201 (254)
T PRK06526 167 EVGYIPFE--------PEAANLFFQLVSSRY---E--RASLIVTSNKP 201 (254)
T ss_pred ccccCCCC--------HHHHHHHHHHHHHHH---h--cCCEEEEcCCC
Confidence 99976421 223344555554422 1 12367788875
No 257
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.54 E-value=2.2e-07 Score=92.11 Aligned_cols=101 Identities=24% Similarity=0.363 Sum_probs=65.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhhcccchh---HHHHHHHHHHHHhhccccCCCCCcEEEEEc
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGET---EKNIRDLFADAENDQRTRGDQSDLHVIIFD 329 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~~~~g~~---~~~i~~lf~~a~~~~~~~~~~~~~~Il~iD 329 (594)
.+++|+|+||||||+|+.++++++. +..+.+++.++++....... ......+++... ..++|+||
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~----------~~dlLvID 169 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS----------NVDLLVID 169 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc----------cCCEEEEe
Confidence 4899999999999999999999883 45667778877776432211 112223443332 24599999
Q ss_pred cchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCc
Q 007661 330 EIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRK 377 (594)
Q Consensus 330 Eid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~ 377 (594)
|++... .+.....++.++++. ....+..+|.+||..
T Consensus 170 Dig~~~--------~s~~~~~~l~~Ii~~----Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 170 EIGVQT--------ESRYEKVIINQIVDR----RSSSKRPTGMLTNSN 205 (244)
T ss_pred CCCCCC--------CCHHHHHHHHHHHHH----HHhCCCCEEEeCCCC
Confidence 998753 123445566666554 222345677788864
No 258
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.53 E-value=1.9e-06 Score=84.55 Aligned_cols=110 Identities=22% Similarity=0.118 Sum_probs=64.9
Q ss_pred CcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCC-------------cccccHHhhCCC
Q 007661 322 DLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNR-------------KDMLDEALLRPG 388 (594)
Q Consensus 322 ~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~-------------~~~ld~al~r~g 388 (594)
-|-+|||||++.|- -+-+.-|-..+ ++.-.-+||.++|+ |..|++.|+.
T Consensus 296 vPGVLFIDEVhMLD-------------iEcFTyL~kal---ES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD-- 357 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLD-------------IECFTYLHKAL---ESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD-- 357 (456)
T ss_pred cCcceEeeehhhhh-------------hHHHHHHHHHh---cCCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh--
Confidence 36699999999873 11122222222 22233466677776 3346777776
Q ss_pred CccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 007661 389 RLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFA 453 (594)
Q Consensus 389 Rf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a 453 (594)
|+- .|..-++++++.++|++++.+.... ..++..+..|+.....-+.+-.-+|+.-|...|
T Consensus 358 Rl~-Iirt~~y~~~e~r~Ii~~Ra~~E~l---~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~a 418 (456)
T KOG1942|consen 358 RLL-IIRTLPYDEEEIRQIIKIRAQVEGL---QVEEEALDLLAEIGTSTSLRYAVQLLTPASILA 418 (456)
T ss_pred hee-EEeeccCCHHHHHHHHHHHHhhhcc---eecHHHHHHHHhhccchhHHHHHHhcCHHHHHH
Confidence 543 5666677889999999987654331 234445677777655555555555555444443
No 259
>PF13173 AAA_14: AAA domain
Probab=98.50 E-value=9.7e-07 Score=78.89 Aligned_cols=119 Identities=22% Similarity=0.292 Sum_probs=69.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhhC-CCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchh
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKMLN-GMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDA 333 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l~-~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~ 333 (594)
+-++|+||.||||||+++.+++.+. ...+.+++..+.......... +.+.+.+.... ...+|||||++.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~--------~~~~i~iDEiq~ 72 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKP--------GKKYIFIDEIQY 72 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhcc--------CCcEEEEehhhh
Confidence 4689999999999999999998863 355677777665442111111 22223222111 134999999998
Q ss_pred hhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccc----cHHhhCCCCccceeecCCCCHHH
Q 007661 334 ICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDML----DEALLRPGRLEVQVEISLPDENG 403 (594)
Q Consensus 334 l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~l----d~al~r~gRf~~~i~i~~P~~~~ 403 (594)
+- .....+..+... ..++.+|.|++....+ ...+ .||.. .+++.+.+..|
T Consensus 73 ~~-----------~~~~~lk~l~d~------~~~~~ii~tgS~~~~l~~~~~~~l--~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 73 LP-----------DWEDALKFLVDN------GPNIKIILTGSSSSLLSKDIAESL--AGRVI-EIELYPLSFRE 126 (128)
T ss_pred hc-----------cHHHHHHHHHHh------ccCceEEEEccchHHHhhcccccC--CCeEE-EEEECCCCHHH
Confidence 72 133344444442 1345555555544333 2333 45755 67888877654
No 260
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=2.4e-06 Score=87.88 Aligned_cols=136 Identities=19% Similarity=0.216 Sum_probs=92.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEE--------------Eecchhhhccc---c--hhHHHHHHHHHHHHhh
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI--------------VNGPEVLSKFV---G--ETEKNIRDLFADAEND 313 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~--------------v~~~~l~~~~~---g--~~~~~i~~lf~~a~~~ 313 (594)
.+..+||+||.|+||+++|+++|+.+.+...-. -+.+|+..-.. | -....+|++-+.+...
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~ 103 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQES 103 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhC
Confidence 445799999999999999999999885432100 01122211111 1 1234566665555433
Q ss_pred ccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccce
Q 007661 314 QRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQ 393 (594)
Q Consensus 314 ~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~ 393 (594)
. ..+ ...|++||++|.+- ....|.||..++. +..++++|..|+.++.|-|.++++++ .
T Consensus 104 ~-~~~---~~kV~iI~~ae~m~-------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~SRCq---~ 161 (319)
T PRK06090 104 S-QLN---GYRLFVIEPADAMN-------------ESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVSRCQ---Q 161 (319)
T ss_pred c-ccC---CceEEEecchhhhC-------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHhcce---e
Confidence 2 111 23599999999984 3355778888874 45689999999999999999998444 7
Q ss_pred eecCCCCHHHHHHHHHH
Q 007661 394 VEISLPDENGRLQILQI 410 (594)
Q Consensus 394 i~i~~P~~~~r~~IL~~ 410 (594)
+.|+.|+.++..+.|..
T Consensus 162 ~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 162 WVVTPPSTAQAMQWLKG 178 (319)
T ss_pred EeCCCCCHHHHHHHHHH
Confidence 89999999988887753
No 261
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.50 E-value=2.3e-06 Score=97.49 Aligned_cols=163 Identities=13% Similarity=0.124 Sum_probs=84.6
Q ss_pred ccCcHHHHHHHHHHHHHccCCChh---h----hhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCC------CcEEEe
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPH---V----TSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGM------EPKIVN 287 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~---~----~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~------~~~~v~ 287 (594)
|-|.+..++.|+-.+|----.... + +....++..-+|||+|+||||||.+|+++++..... .+..+.
T Consensus 452 I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vg 531 (915)
T PTZ00111 452 IKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVG 531 (915)
T ss_pred EECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcccc
Confidence 888888777775444432211100 0 000123445589999999999999999999864311 111122
Q ss_pred cchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCc-----
Q 007661 288 GPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV----- 362 (594)
Q Consensus 288 ~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~----- 362 (594)
+..... +.... ..+ +. .+.+ ... ....-+++|||+|.+-+ .....|+..|+.-
T Consensus 532 LTa~~~-~~d~~---tG~-~~-le~G-aLv--lAdgGtL~IDEidkms~-------------~~Q~aLlEaMEqqtIsI~ 589 (915)
T PTZ00111 532 LTASIK-FNESD---NGR-AM-IQPG-AVV--LANGGVCCIDELDKCHN-------------ESRLSLYEVMEQQTVTIA 589 (915)
T ss_pred ccchhh-hcccc---cCc-cc-ccCC-cEE--EcCCCeEEecchhhCCH-------------HHHHHHHHHHhCCEEEEe
Confidence 211110 00000 000 00 0000 000 00112999999999742 2233444445321
Q ss_pred ------cccCcEEEEEeeCCcc-------------cccHHhhCCCCccce-eecCCCCHHHHHHH
Q 007661 363 ------ESLNNVLLIGMTNRKD-------------MLDEALLRPGRLEVQ-VEISLPDENGRLQI 407 (594)
Q Consensus 363 ------~~~~~v~vI~~tn~~~-------------~ld~al~r~gRf~~~-i~i~~P~~~~r~~I 407 (594)
.-..++.|||++|+.. .|+++|++ |||.. +-++.|+++.=..|
T Consensus 590 KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~l 652 (915)
T PTZ00111 590 KAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLI 652 (915)
T ss_pred cCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHH
Confidence 1124789999999852 16799998 99765 34566665543333
No 262
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.49 E-value=5.9e-07 Score=98.22 Aligned_cols=178 Identities=21% Similarity=0.233 Sum_probs=98.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhhcccchhHHHHHHHHHHHHh-------hccccCCCCCcE
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGETEKNIRDLFADAEN-------DQRTRGDQSDLH 324 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~-------~~~~~~~~~~~~ 324 (594)
..++|++|++||||+++|+++..... +.+++.++|..+.... .-..+|..... ..+.........
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 239 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESL------LESELFGHEKGAFTGAQTLRQGLFERANEG 239 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHH------HHHHhcCCCCCCCCCCCCCCCCceEECCCC
Confidence 35799999999999999999987652 3567888988663321 11112211100 000000011123
Q ss_pred EEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc---------ccCcEEEEEeeCCcccccHHhhCCCCccc---
Q 007661 325 VIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE---------SLNNVLLIGMTNRKDMLDEALLRPGRLEV--- 392 (594)
Q Consensus 325 Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~---------~~~~v~vI~~tn~~~~ld~al~r~gRf~~--- 392 (594)
+|||||++.+.+ .+...|+..++.-. ...++.+|++|+..- . .+.+.|+|..
T Consensus 240 tl~ld~i~~l~~-------------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l--~-~~~~~g~~~~~l~ 303 (457)
T PRK11361 240 TLLLDEIGEMPL-------------VLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDL--Q-AMVKEGTFREDLF 303 (457)
T ss_pred EEEEechhhCCH-------------HHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCH--H-HHHHcCCchHHHH
Confidence 999999999853 23344555544211 113588999998641 1 2222333322
Q ss_pred ----eeecCCCCHHHHHH----HHHHHHhccccC----CCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 007661 393 ----QVEISLPDENGRLQ----ILQIHTNKMKEN----SFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFA 453 (594)
Q Consensus 393 ----~i~i~~P~~~~r~~----IL~~~~~~~~~~----~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a 453 (594)
.+.+..|...+|.+ +.+.++.+.... ..-.+...+..|.....--+.++|+++++.|...+
T Consensus 304 ~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~ 376 (457)
T PRK11361 304 YRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN 376 (457)
T ss_pred HHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC
Confidence 35566676666543 334444433221 11123334566666655557799999999987543
No 263
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.48 E-value=1.4e-07 Score=96.65 Aligned_cols=53 Identities=26% Similarity=0.358 Sum_probs=43.5
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccccccccchhhhHHHHHHHhhhc
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVSECQFS 592 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~vG~sE~~~~~~ir~~F~~A~~ 592 (594)
....+++||||||||||+||+.||...+.+|..++.-.. | -+ .||++|+.|++
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~--g--vk----dlr~i~e~a~~ 98 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS--G--VK----DLREIIEEARK 98 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc--c--HH----HHHHHHHHHHH
Confidence 345679999999999999999999999999999875421 2 22 29999999975
No 264
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.45 E-value=1.6e-06 Score=96.90 Aligned_cols=51 Identities=24% Similarity=0.462 Sum_probs=40.7
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCC
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG 280 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~ 280 (594)
|+..|++ |.|.+..++.+ ..++.. .++++|+||||||||++++++++.+.+
T Consensus 26 ~~~~~~~--vigq~~a~~~L-~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 26 PERLIDQ--VIGQEHAVEVI-KKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred CcccHHH--cCChHHHHHHH-HHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 6677888 99998888776 554432 247999999999999999999988753
No 265
>PRK09183 transposase/IS protein; Provisional
Probab=98.45 E-value=4.1e-07 Score=91.42 Aligned_cols=75 Identities=20% Similarity=0.382 Sum_probs=49.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEecchhhhcccch-hHHHHHHHHHHHHhhccccCCCCCcEEEEE
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPEVLSKFVGE-TEKNIRDLFADAENDQRTRGDQSDLHVIIF 328 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~~~l~~~~~g~-~~~~i~~lf~~a~~~~~~~~~~~~~~Il~i 328 (594)
....+++|+||||||||+++.+++..+ .+..+.+++.+++...+... ....+..++..... .+++++|
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~---------~~dlLii 170 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVM---------APRLLII 170 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhc---------CCCEEEE
Confidence 445689999999999999999998774 34556677777776543211 11123344443322 2459999
Q ss_pred ccchhhh
Q 007661 329 DEIDAIC 335 (594)
Q Consensus 329 DEid~l~ 335 (594)
||++.+.
T Consensus 171 Ddlg~~~ 177 (259)
T PRK09183 171 DEIGYLP 177 (259)
T ss_pred cccccCC
Confidence 9998753
No 266
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.4e-07 Score=96.26 Aligned_cols=64 Identities=20% Similarity=0.363 Sum_probs=53.3
Q ss_pred hcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc-cccccchhhhHHHHHHHhhhcCC
Q 007661 528 VSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM-IGLHESTKCAQIVKVSECQFSGS 594 (594)
Q Consensus 528 ~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~-vG~sE~~~~~~ir~~F~~A~~~~ 594 (594)
+....|-++||||||||||||+.|+-||..+|+.+--+.|-++- .|--- +.+|.++|+-|.+|.
T Consensus 378 K~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qa---VTkiH~lFDWakkS~ 442 (630)
T KOG0742|consen 378 KKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQA---VTKIHKLFDWAKKSR 442 (630)
T ss_pred ccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHH---HHHHHHHHHHHhhcc
Confidence 34557788999999999999999999999999999999998885 55321 224999999999874
No 267
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.44 E-value=5.1e-07 Score=92.72 Aligned_cols=102 Identities=20% Similarity=0.370 Sum_probs=64.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhhcccchhH-HHHHHHHHHHHhhccccCCCCCcEEEEEc
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGETE-KNIRDLFADAENDQRTRGDQSDLHVIIFD 329 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~~~~g~~~-~~i~~lf~~a~~~~~~~~~~~~~~Il~iD 329 (594)
..+|++|+||+|||||+|+.++|+++. +..+.++..++++........ ....+.++.... .++|+||
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~----------~dlLiID 224 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKE----------APVLMLD 224 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcC----------CCEEEEe
Confidence 467999999999999999999999983 455677888877664322111 112333333322 3499999
Q ss_pred cchhhhccCCCCCCCCchHH-HHHHHHHHh-hcCccccCcEEEEEeeCCc
Q 007661 330 EIDAICKSRGSTRDGTGVHD-SIVNQLLTK-IDGVESLNNVLLIGMTNRK 377 (594)
Q Consensus 330 Eid~l~~~~~~~~~~~~~~~-~~v~~Ll~~-ld~~~~~~~v~vI~~tn~~ 377 (594)
|+.+-.. +.+.. .++..+++. +. .+...|.|||.+
T Consensus 225 DiG~e~~--------s~~~~~~ll~~Il~~R~~-----~~~~ti~TSNl~ 261 (306)
T PRK08939 225 DIGAEQM--------SSWVRDEVLGVILQYRMQ-----EELPTFFTSNFD 261 (306)
T ss_pred cCCCccc--------cHHHHHHHHHHHHHHHHH-----CCCeEEEECCCC
Confidence 9986421 12333 455555432 22 356678888874
No 268
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.42 E-value=1.3e-06 Score=78.06 Aligned_cols=88 Identities=22% Similarity=0.396 Sum_probs=51.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhC-------CCCcEEEecchhhh--------------cccc-hhHH-HHHHHHHH
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLN-------GMEPKIVNGPEVLS--------------KFVG-ETEK-NIRDLFAD 309 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~-------~~~~~~v~~~~l~~--------------~~~g-~~~~-~i~~lf~~ 309 (594)
..+.++++||||+|||++++.+++.+. ...++.++++...+ .... .+.. ....+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 345789999999999999999999874 34556666554431 0001 1222 23333333
Q ss_pred HHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhc
Q 007661 310 AENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKID 360 (594)
Q Consensus 310 a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld 360 (594)
..... ..+|+|||+|.+. ....++.|...++
T Consensus 83 l~~~~--------~~~lviDe~~~l~------------~~~~l~~l~~l~~ 113 (131)
T PF13401_consen 83 LDRRR--------VVLLVIDEADHLF------------SDEFLEFLRSLLN 113 (131)
T ss_dssp HHHCT--------EEEEEEETTHHHH------------THHHHHHHHHHTC
T ss_pred HHhcC--------CeEEEEeChHhcC------------CHHHHHHHHHHHh
Confidence 33332 2499999999974 1446666666656
No 269
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.41 E-value=2.5e-07 Score=87.55 Aligned_cols=73 Identities=23% Similarity=0.519 Sum_probs=47.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEecchhhhcccch-hHHHHHHHHHHHHhhccccCCCCCcEEEEE
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPEVLSKFVGE-TEKNIRDLFADAENDQRTRGDQSDLHVIIF 328 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~~~l~~~~~g~-~~~~i~~lf~~a~~~~~~~~~~~~~~Il~i 328 (594)
....|++|+||||||||++|.++++++ .+..+.+++.++++...... ......+.++.... ..+|+|
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~----------~dlLil 114 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR----------VDLLIL 114 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT----------SSCEEE
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc----------ccEecc
Confidence 345799999999999999999999876 45677888888887743211 01112233443333 249999
Q ss_pred ccchhh
Q 007661 329 DEIDAI 334 (594)
Q Consensus 329 DEid~l 334 (594)
||+...
T Consensus 115 DDlG~~ 120 (178)
T PF01695_consen 115 DDLGYE 120 (178)
T ss_dssp ETCTSS
T ss_pred ccccee
Confidence 999653
No 270
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.41 E-value=4.8e-07 Score=96.43 Aligned_cols=54 Identities=31% Similarity=0.388 Sum_probs=45.1
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc----ccccccchhhhHHHHHHHh
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES----MIGLHESTKCAQIVKVSEC 589 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~----~vG~sE~~~~~~ir~~F~~ 589 (594)
+..++||+||||||||++|+++|...+.+|+.++++++ |+|+...+ .++.+++.
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~---~l~~l~~~ 164 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVEN---ILLKLLQA 164 (412)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHH---HHHHHHHh
Confidence 56789999999999999999999999999999999875 58876554 35666554
No 271
>PRK06921 hypothetical protein; Provisional
Probab=98.40 E-value=2.6e-06 Score=85.87 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=32.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhC---CCCcEEEecchhhh
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLN---GMEPKIVNGPEVLS 293 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~---~~~~~~v~~~~l~~ 293 (594)
...+++|+||||||||+|+.++|+++. +..++++...+++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~ 159 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG 159 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH
Confidence 456899999999999999999999874 34556666655544
No 272
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.36 E-value=3.6e-06 Score=92.35 Aligned_cols=200 Identities=19% Similarity=0.218 Sum_probs=110.9
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhhcccch
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGE 298 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~~~~g~ 298 (594)
+.|-....+++.+ .+... ......+++.|++|||||++|+++..... ..+++.++|..+....
T Consensus 140 lig~s~~~~~l~~-~~~~~-----------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~--- 204 (469)
T PRK10923 140 IIGEAPAMQDVFR-IIGRL-----------SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL--- 204 (469)
T ss_pred ceecCHHHHHHHH-HHHHH-----------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH---
Confidence 6666666666632 22211 13345799999999999999999998763 4578889998763211
Q ss_pred hHHHHHHHHHHHHhh-------ccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc--------
Q 007661 299 TEKNIRDLFADAEND-------QRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE-------- 363 (594)
Q Consensus 299 ~~~~i~~lf~~a~~~-------~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~-------- 363 (594)
.-..+|...... ............|||||++.+.. .+...|+..++.-.
T Consensus 205 ---~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~-------------~~q~~L~~~l~~~~~~~~~~~~ 268 (469)
T PRK10923 205 ---IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPL-------------DVQTRLLRVLADGQFYRVGGYA 268 (469)
T ss_pred ---HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCH-------------HHHHHHHHHHhcCcEEeCCCCC
Confidence 111222211100 00000011123899999999852 23344555554211
Q ss_pred -ccCcEEEEEeeCCcc-------cccHHhhCCCCc-cceeecCCCCH--HHHHHHHHHHHhccccC----CCCCCcccHH
Q 007661 364 -SLNNVLLIGMTNRKD-------MLDEALLRPGRL-EVQVEISLPDE--NGRLQILQIHTNKMKEN----SFLAPDVNLQ 428 (594)
Q Consensus 364 -~~~~v~vI~~tn~~~-------~ld~al~r~gRf-~~~i~i~~P~~--~~r~~IL~~~~~~~~~~----~~l~~~~~l~ 428 (594)
...++.+|++|+..- .+.+.|.. |+ ...|++|+..+ ++...+++.+++..... ..-.+...+.
T Consensus 269 ~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~ 346 (469)
T PRK10923 269 PVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEA 346 (469)
T ss_pred eEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 123578999987641 23344444 44 23444444422 33444555555443221 1112334566
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHH
Q 007661 429 ELAARTKNYSGAELEGVAKSAVSFA 453 (594)
Q Consensus 429 ~la~~t~g~sg~dl~~l~~~A~~~a 453 (594)
.|.....--+.++|+++++.|...+
T Consensus 347 ~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 347 ALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHhC
Confidence 7777666667899999999988655
No 273
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.36 E-value=9.7e-07 Score=88.33 Aligned_cols=102 Identities=25% Similarity=0.429 Sum_probs=62.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhhcccchhHH-HH-HHHHHHHHhhccccCCCCCcEEEEE
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGETEK-NI-RDLFADAENDQRTRGDQSDLHVIIF 328 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~~~~g~~~~-~i-~~lf~~a~~~~~~~~~~~~~~Il~i 328 (594)
.+.+++|+||||+|||+||-|+++++. +..+.++..++++......... .. .++...... .++|+|
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~----------~dlLIi 173 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKK----------VDLLII 173 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhc----------CCEEEE
Confidence 567999999999999999999999983 4567788888887743221111 11 111121222 349999
Q ss_pred ccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCc
Q 007661 329 DEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRK 377 (594)
Q Consensus 329 DEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~ 377 (594)
||+-..-. +......+.+++...- ..... |.++|.+
T Consensus 174 DDlG~~~~--------~~~~~~~~~q~I~~r~---~~~~~--~~tsN~~ 209 (254)
T COG1484 174 DDIGYEPF--------SQEEADLLFQLISRRY---ESRSL--IITSNLS 209 (254)
T ss_pred ecccCccC--------CHHHHHHHHHHHHHHH---hhccc--eeecCCC
Confidence 99987531 1234444444433311 11223 7788875
No 274
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=3e-07 Score=91.37 Aligned_cols=52 Identities=23% Similarity=0.277 Sum_probs=43.6
Q ss_pred eEEEeecCCCCchHHHHHHHHhhc---------CCCEEEEeccccc---cccccchhhhHHHHHHHhh
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDS---------DFPFVKIISAESM---IGLHESTKCAQIVKVSECQ 590 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~---------~~~fi~v~~~e~~---vG~sE~~~~~~ir~~F~~A 590 (594)
+=+||+||||||||+|+||||... .--+|-|++..+| .+||-+. |.++|++-
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKl----V~kmF~kI 241 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKL----VAKMFQKI 241 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhH----HHHHHHHH
Confidence 448999999999999999999654 4457788998886 8888877 99999874
No 275
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.36 E-value=4.5e-06 Score=91.41 Aligned_cols=201 Identities=18% Similarity=0.209 Sum_probs=110.7
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhhcccch
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGE 298 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~~~~g~ 298 (594)
+.|......++++.+... ......+++.|.+||||+++|+++..... ..+++.++|..+.....
T Consensus 136 lig~s~~~~~v~~~i~~~------------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~-- 201 (463)
T TIGR01818 136 LIGEAPAMQEVFRAIGRL------------SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLI-- 201 (463)
T ss_pred eeecCHHHHHHHHHHHHH------------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH--
Confidence 666666666664433221 12345799999999999999999987753 45788899877633211
Q ss_pred hHHHHHHHHHHHH-------hhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc--------
Q 007661 299 TEKNIRDLFADAE-------NDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE-------- 363 (594)
Q Consensus 299 ~~~~i~~lf~~a~-------~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~-------- 363 (594)
-..+|.... ..............|||||++.+.. .+...|+..++.-.
T Consensus 202 ----~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~-------------~~q~~ll~~l~~~~~~~~~~~~ 264 (463)
T TIGR01818 202 ----ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPL-------------DAQTRLLRVLADGEFYRVGGRT 264 (463)
T ss_pred ----HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCH-------------HHHHHHHHHHhcCcEEECCCCc
Confidence 111121100 0000000011234899999999852 22344444443211
Q ss_pred -ccCcEEEEEeeCCcc-------cccHHhhCCCCcc-ceeecCCCC--HHHHHHHHHHHHhccccC----CCCCCcccHH
Q 007661 364 -SLNNVLLIGMTNRKD-------MLDEALLRPGRLE-VQVEISLPD--ENGRLQILQIHTNKMKEN----SFLAPDVNLQ 428 (594)
Q Consensus 364 -~~~~v~vI~~tn~~~-------~ld~al~r~gRf~-~~i~i~~P~--~~~r~~IL~~~~~~~~~~----~~l~~~~~l~ 428 (594)
...++.+|++|+..- .+.+.|.. |+. ..|++|+.. .++...+++.+++..... ....++..+.
T Consensus 265 ~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~ 342 (463)
T TIGR01818 265 PIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALE 342 (463)
T ss_pred eeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHH
Confidence 112678888887641 12333332 333 355665554 445556666555544221 1112334456
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHH
Q 007661 429 ELAARTKNYSGAELEGVAKSAVSFAL 454 (594)
Q Consensus 429 ~la~~t~g~sg~dl~~l~~~A~~~a~ 454 (594)
.|.....--+.++|+++++.|...+.
T Consensus 343 ~L~~~~wpgNvreL~~~~~~~~~~~~ 368 (463)
T TIGR01818 343 RLKQLRWPGNVRQLENLCRWLTVMAS 368 (463)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 66665444456999999999987654
No 276
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.36 E-value=8.9e-07 Score=91.67 Aligned_cols=72 Identities=24% Similarity=0.411 Sum_probs=48.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEecchhhhcccch---hHHHHHHHHHHHHhhccccCCCCCcEEEEE
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPEVLSKFVGE---TEKNIRDLFADAENDQRTRGDQSDLHVIIF 328 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~~~l~~~~~g~---~~~~i~~lf~~a~~~~~~~~~~~~~~Il~i 328 (594)
..+++|+||+|||||+|+.++|+++ .+..+++++.++++...... ........++.... .++|+|
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~----------~DLLII 252 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLIN----------CDLLII 252 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhcc----------CCEEEE
Confidence 3789999999999999999999987 35567778888776643211 00111111222222 349999
Q ss_pred ccchhhh
Q 007661 329 DEIDAIC 335 (594)
Q Consensus 329 DEid~l~ 335 (594)
||+....
T Consensus 253 DDlG~e~ 259 (329)
T PRK06835 253 DDLGTEK 259 (329)
T ss_pred eccCCCC
Confidence 9998753
No 277
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.34 E-value=1.3e-06 Score=95.83 Aligned_cols=43 Identities=19% Similarity=0.031 Sum_probs=32.5
Q ss_pred HhcCCCcceEEEeecCCCCchHHHHHHHHhhc---CCCEEEEeccc
Q 007661 527 KVSKGSPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAE 569 (594)
Q Consensus 527 ~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~---~~~fi~v~~~e 569 (594)
...+..+...+|+.||||+|||+|+..+|.+. |-+.+.+..-|
T Consensus 256 lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eE 301 (484)
T TIGR02655 256 CGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEE 301 (484)
T ss_pred hcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 34567777889999999999999999888654 55565554443
No 278
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=6.7e-07 Score=93.32 Aligned_cols=74 Identities=15% Similarity=0.111 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHH---HHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccccccccchhhhHHHHHHH
Q 007661 512 HKHIYQRAMLLV---EQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVSE 588 (594)
Q Consensus 512 ~~~~~~~~~~~~---~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~vG~sE~~~~~~ir~~F~ 588 (594)
.+++++.+.... +++++.|+.=.+|.|||||||||||++..|+|+..+++..-+..+++- ..+| +|++..
T Consensus 210 K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~-~n~d------Lr~LL~ 282 (457)
T KOG0743|consen 210 KERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK-LDSD------LRHLLL 282 (457)
T ss_pred HHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc-CcHH------HHHHHH
Confidence 445555555544 456777888889999999999999999999999999999988887764 2233 666665
Q ss_pred hhhc
Q 007661 589 CQFS 592 (594)
Q Consensus 589 ~A~~ 592 (594)
.+..
T Consensus 283 ~t~~ 286 (457)
T KOG0743|consen 283 ATPN 286 (457)
T ss_pred hCCC
Confidence 5443
No 279
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.34 E-value=9.2e-07 Score=80.14 Aligned_cols=88 Identities=24% Similarity=0.393 Sum_probs=54.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhCC--CCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEcc
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLNG--MEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 330 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~~--~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDE 330 (594)
...+|||+|++||||+++|+++...... ..++.++|..+. .++++.+... .|||+|
T Consensus 20 ~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a~~g-----------tL~l~~ 77 (138)
T PF14532_consen 20 SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQAKGG-----------TLYLKN 77 (138)
T ss_dssp SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHCTTS-----------EEEEEC
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHcCCC-----------EEEECC
Confidence 4457999999999999999999987642 233444554432 3455555332 999999
Q ss_pred chhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCC
Q 007661 331 IDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNR 376 (594)
Q Consensus 331 id~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~ 376 (594)
+|.+.+ ... ..|+..++... ..++.+|+++..
T Consensus 78 i~~L~~----------~~Q---~~L~~~l~~~~-~~~~RlI~ss~~ 109 (138)
T PF14532_consen 78 IDRLSP----------EAQ---RRLLDLLKRQE-RSNVRLIASSSQ 109 (138)
T ss_dssp GCCS-H----------HHH---HHHHHHHHHCT-TTTSEEEEEECC
T ss_pred hHHCCH----------HHH---HHHHHHHHhcC-CCCeEEEEEeCC
Confidence 999852 123 33333333222 356677777765
No 280
>PF05729 NACHT: NACHT domain
Probab=98.33 E-value=4.4e-06 Score=77.47 Aligned_cols=141 Identities=20% Similarity=0.256 Sum_probs=73.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhCCCC--------cEEEecchhhhc------------ccchhHHHHHHHHHHHHhhcc
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLNGME--------PKIVNGPEVLSK------------FVGETEKNIRDLFADAENDQR 315 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~~~~--------~~~v~~~~l~~~------------~~g~~~~~i~~lf~~a~~~~~ 315 (594)
-++|+|+||+|||++++.++..+.... +++..+.+.... ............+......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-- 79 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEK-- 79 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHc--
Confidence 478999999999999999998873221 222333222211 0111111111111111111
Q ss_pred ccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCccc--ccHHhhCCCCccce
Q 007661 316 TRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDM--LDEALLRPGRLEVQ 393 (594)
Q Consensus 316 ~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~--ld~al~r~gRf~~~ 393 (594)
....+|+||.+|.+...... .........+.+++.. ....++.+|.++++... +...+.. ...
T Consensus 80 -----~~~~llilDglDE~~~~~~~--~~~~~~~~~l~~l~~~----~~~~~~~liit~r~~~~~~~~~~~~~----~~~ 144 (166)
T PF05729_consen 80 -----NKRVLLILDGLDELEEQDQS--QERQRLLDLLSQLLPQ----ALPPGVKLIITSRPRAFPDLRRRLKQ----AQI 144 (166)
T ss_pred -----CCceEEEEechHhcccchhh--hHHHHHHHHHHHHhhh----ccCCCCeEEEEEcCChHHHHHHhcCC----CcE
Confidence 23459999999998743221 0001122233333332 11234555555543222 2222222 246
Q ss_pred eecCCCCHHHHHHHHHHHHh
Q 007661 394 VEISLPDENGRLQILQIHTN 413 (594)
Q Consensus 394 i~i~~P~~~~r~~IL~~~~~ 413 (594)
+++...+++++.++++.+++
T Consensus 145 ~~l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 145 LELEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred EEECCCCHHHHHHHHHHHhh
Confidence 89999999999999988765
No 281
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.33 E-value=1.2e-05 Score=79.26 Aligned_cols=130 Identities=20% Similarity=0.140 Sum_probs=83.3
Q ss_pred CcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCC------------cccccHHhhCCCC
Q 007661 322 DLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNR------------KDMLDEALLRPGR 389 (594)
Q Consensus 322 ~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~------------~~~ld~al~r~gR 389 (594)
-|-||||||+|.|-- .--..+|..++. .... ++|.+||+ |..|+-.|+. |
T Consensus 288 vpGVLFIDEvHMLDI----------EcFsFlNrAlE~-----d~~P-iiimaTNrgit~iRGTn~~SphGiP~D~lD--R 349 (454)
T KOG2680|consen 288 VPGVLFIDEVHMLDI----------ECFSFLNRALEN-----DMAP-IIIMATNRGITRIRGTNYRSPHGIPIDLLD--R 349 (454)
T ss_pred ccceEEEeeehhhhh----------HHHHHHHHHhhh-----ccCc-EEEEEcCCceEEeecCCCCCCCCCcHHHhh--h
Confidence 467999999998731 112233433322 1123 44555554 3446666765 4
Q ss_pred ccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCccc
Q 007661 390 LEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDE 469 (594)
Q Consensus 390 f~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~ 469 (594)
.- .|...+++.++..+||++.+..... ...+..++.|......-+.+--..|...|.+.|.+|.
T Consensus 350 ~l-II~t~py~~~d~~~IL~iRc~EEdv---~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk------------ 413 (454)
T KOG2680|consen 350 ML-IISTQPYTEEDIKKILRIRCQEEDV---EMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRK------------ 413 (454)
T ss_pred hh-eeecccCcHHHHHHHHHhhhhhhcc---ccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhc------------
Confidence 32 6777788999999999998865321 2233345666666666677777888888888888874
Q ss_pred chhhcchhHHHHHHHhc
Q 007661 470 ESIKVTMDDFLHALYEI 486 (594)
Q Consensus 470 ~~~~vt~~df~~al~~~ 486 (594)
...+..+|+..+.+-+
T Consensus 414 -~~~v~~~di~r~y~LF 429 (454)
T KOG2680|consen 414 -GKVVEVDDIERVYRLF 429 (454)
T ss_pred -CceeehhHHHHHHHHH
Confidence 2456777887776655
No 282
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.33 E-value=1.4e-06 Score=100.88 Aligned_cols=54 Identities=22% Similarity=0.293 Sum_probs=45.2
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccc------------cccccccchhhhHHHHHHHhhhc
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAE------------SMIGLHESTKCAQIVKVSECQFS 592 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e------------~~vG~sE~~~~~~ir~~F~~A~~ 592 (594)
..+||+||||||||++|+++|.+.+.+|+.+.... .|+|..... +.+.|..|..
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~----i~~~l~~~~~ 413 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGR----IIQGLKKAKT 413 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCch----HHHHHHHhCc
Confidence 37999999999999999999999999999996443 257877775 8888887753
No 283
>PRK15115 response regulator GlrR; Provisional
Probab=98.32 E-value=2.1e-06 Score=93.49 Aligned_cols=178 Identities=18% Similarity=0.199 Sum_probs=102.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhhcccchhHHHHHHHHHHHHhh-------ccccCCCCCcE
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGETEKNIRDLFADAEND-------QRTRGDQSDLH 324 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~-------~~~~~~~~~~~ 324 (594)
...++++|++|||||++|+++.+... ..+++.++|..+.... .-..+|..+... ...........
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 230 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQL------LESELFGHARGAFTGAVSNREGLFQAAEGG 230 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHH------HHHHhcCCCcCCCCCCccCCCCcEEECCCC
Confidence 34699999999999999999988753 3578889988763321 111233221110 00000011123
Q ss_pred EEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc---------ccCcEEEEEeeCCcccccHHhhCCCCcc----
Q 007661 325 VIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE---------SLNNVLLIGMTNRKDMLDEALLRPGRLE---- 391 (594)
Q Consensus 325 Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~---------~~~~v~vI~~tn~~~~ld~al~r~gRf~---- 391 (594)
.|||||+|.|.+ .....|+..++.-. ...++.+|++|+.. ++..+. .|+|.
T Consensus 231 tl~l~~i~~l~~-------------~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~-~~~f~~~l~ 294 (444)
T PRK15115 231 TLFLDEIGDMPA-------------PLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMA-RGEFREDLY 294 (444)
T ss_pred EEEEEccccCCH-------------HHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHH-cCCccHHHH
Confidence 999999999853 23344555443211 11268899998863 443333 23441
Q ss_pred ---ceeecCCCCHHHHH----HHHHHHHhcccc----CCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 007661 392 ---VQVEISLPDENGRL----QILQIHTNKMKE----NSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFA 453 (594)
Q Consensus 392 ---~~i~i~~P~~~~r~----~IL~~~~~~~~~----~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a 453 (594)
..+.+.+|...+|. .+++.+++.... ...-.++..+..|......-+.++|+++++.|...+
T Consensus 295 ~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~ 367 (444)
T PRK15115 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT 367 (444)
T ss_pred HhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 13556667666664 244444444321 111123445677777766668899999999987643
No 284
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.30 E-value=1e-05 Score=81.77 Aligned_cols=206 Identities=17% Similarity=0.226 Sum_probs=125.0
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEecc
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGP 289 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~~ 289 (594)
+.-.|+. |.|.....+.++.++....+... .+|+.|.+||||-++||++.... ...+++.+||.
T Consensus 199 ~~~~F~~--~v~~S~~mk~~v~qA~k~AmlDA------------PLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA 264 (511)
T COG3283 199 DVSGFEQ--IVAVSPKMKHVVEQAQKLAMLDA------------PLLITGETGTGKDLLAKACHLASPRHSKPFLALNCA 264 (511)
T ss_pred cccchHH--HhhccHHHHHHHHHHHHhhccCC------------CeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecC
Confidence 5567887 88888888888788776655432 58999999999999999988665 24578889997
Q ss_pred hhhhc-----ccchh--HHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCc
Q 007661 290 EVLSK-----FVGET--EKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV 362 (594)
Q Consensus 290 ~l~~~-----~~g~~--~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~ 362 (594)
.+... .+|.. ...-..+|+.|..+ .+|+|||-.+. -++...||..+..-
T Consensus 265 ~lPe~~aEsElFG~apg~~gk~GffE~AngG-----------TVlLDeIgEmS-------------p~lQaKLLRFL~DG 320 (511)
T COG3283 265 SLPEDAAESELFGHAPGDEGKKGFFEQANGG-----------TVLLDEIGEMS-------------PRLQAKLLRFLNDG 320 (511)
T ss_pred CCchhHhHHHHhcCCCCCCCccchhhhccCC-----------eEEeehhhhcC-------------HHHHHHHHHHhcCC
Confidence 76542 11211 12334577777665 89999998764 34556677776531
Q ss_pred -----c----ccCcEEEEEeeCCc--ccccHHhhCC---CCccceeecCCCCHHHHHH--------HHHHHHhccccCCC
Q 007661 363 -----E----SLNNVLLIGMTNRK--DMLDEALLRP---GRLEVQVEISLPDENGRLQ--------ILQIHTNKMKENSF 420 (594)
Q Consensus 363 -----~----~~~~v~vI~~tn~~--~~ld~al~r~---gRf~~~i~i~~P~~~~r~~--------IL~~~~~~~~~~~~ 420 (594)
. -.-+|.||++|..+ +..+..-.|. .|+. .+.+..|...+|.+ .++.+..++.-..+
T Consensus 321 tFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLN-VLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~p 399 (511)
T COG3283 321 TFRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLN-VLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRP 399 (511)
T ss_pred ceeecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhh-eeeecCCccccCcccchHHHHHHHHHHHHHhCCCCC
Confidence 1 12268999999764 1122111111 1333 56677776665542 22233333221111
Q ss_pred CCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Q 007661 421 LAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNR 456 (594)
Q Consensus 421 l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r 456 (594)
-.+..-+..|.+.-.--+-++|.+.+-+|+...-..
T Consensus 400 kl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~Eg~ 435 (511)
T COG3283 400 KLAADLLTVLTRYAWPGNVRQLKNAIYRALTLLEGY 435 (511)
T ss_pred ccCHHHHHHHHHcCCCccHHHHHHHHHHHHHHhccC
Confidence 112223444544444346699999988888766443
No 285
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.30 E-value=1.2e-06 Score=85.96 Aligned_cols=57 Identities=23% Similarity=0.346 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc
Q 007661 513 KHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES 570 (594)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~ 570 (594)
++++..+....+.-+ ......-++|||||||.|||+||..+|+|.|.|+-...||-+
T Consensus 32 ~~vk~~L~ifI~AAk-~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l 88 (332)
T COG2255 32 EKVKEQLQIFIKAAK-KRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL 88 (332)
T ss_pred HHHHHHHHHHHHHHH-hcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc
Confidence 344555555554443 344667899999999999999999999999999999999976
No 286
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.29 E-value=1.5e-05 Score=77.98 Aligned_cols=161 Identities=19% Similarity=0.275 Sum_probs=104.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhhCCCCc--------------------EEEecchhhh---cccch-hHHHHHHHHHHH
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEP--------------------KIVNGPEVLS---KFVGE-TEKNIRDLFADA 310 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l~~~~~--------------------~~v~~~~l~~---~~~g~-~~~~i~~lf~~a 310 (594)
.++|+|||+|+||-|.+.++.+++-+..+ -.++....+. .-.|. ..--++++.++.
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKev 114 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEV 114 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHH
Confidence 37899999999999999999998833110 0111111000 11222 233567777776
Q ss_pred Hhhcccc-CCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCC
Q 007661 311 ENDQRTR-GDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGR 389 (594)
Q Consensus 311 ~~~~~~~-~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gR 389 (594)
.+..+-. .......+++|-|+|.|- +.....|-.-|+.. .+++.+|..+|....|-+++++++-
T Consensus 115 AQt~qie~~~qr~fKvvvi~ead~LT-------------~dAQ~aLRRTMEkY--s~~~RlIl~cns~SriIepIrSRCl 179 (351)
T KOG2035|consen 115 AQTQQIETQGQRPFKVVVINEADELT-------------RDAQHALRRTMEKY--SSNCRLILVCNSTSRIIEPIRSRCL 179 (351)
T ss_pred HhhcchhhccccceEEEEEechHhhh-------------HHHHHHHHHHHHHH--hcCceEEEEecCcccchhHHhhhee
Confidence 6554332 223345699999999884 22333444444432 3578889999999999999998443
Q ss_pred ccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCC
Q 007661 390 LEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKN 436 (594)
Q Consensus 390 f~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g 436 (594)
.|.+|.|+.++...++...+++... ..++.-+..+|+.+.|
T Consensus 180 ---~iRvpaps~eeI~~vl~~v~~kE~l---~lp~~~l~rIa~kS~~ 220 (351)
T KOG2035|consen 180 ---FIRVPAPSDEEITSVLSKVLKKEGL---QLPKELLKRIAEKSNR 220 (351)
T ss_pred ---EEeCCCCCHHHHHHHHHHHHHHhcc---cCcHHHHHHHHHHhcc
Confidence 6889999999999999988876542 2344456677776654
No 287
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.29 E-value=6.7e-07 Score=93.70 Aligned_cols=103 Identities=20% Similarity=0.331 Sum_probs=62.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccch------hHHHHHHHHHHHHhhccccCCCCCcE
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGE------TEKNIRDLFADAENDQRTRGDQSDLH 324 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~------~~~~i~~lf~~a~~~~~~~~~~~~~~ 324 (594)
..+|+|+.||||+|+|||+|.-.+.+.+....-..+.-.+++...... ....+..+-+...+. -.
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~---------~~ 129 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKE---------SR 129 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhc---------CC
Confidence 568999999999999999999999988854222233333443321111 111233333333332 23
Q ss_pred EEEEccchhhhccCCCCCCCCchH-HHHHHHHHHhhcCccccCcEEEEEeeCCc
Q 007661 325 VIIFDEIDAICKSRGSTRDGTGVH-DSIVNQLLTKIDGVESLNNVLLIGMTNRK 377 (594)
Q Consensus 325 Il~iDEid~l~~~~~~~~~~~~~~-~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~ 377 (594)
+|+|||++.-- .. ..++..|+..+- ..++++|+|+|++
T Consensus 130 lLcfDEF~V~D-----------iaDAmil~rLf~~l~----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 130 LLCFDEFQVTD-----------IADAMILKRLFEALF----KRGVVLVATSNRP 168 (362)
T ss_pred EEEEeeeeccc-----------hhHHHHHHHHHHHHH----HCCCEEEecCCCC
Confidence 99999998631 22 234445554432 2489999999985
No 288
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.29 E-value=1.8e-06 Score=91.67 Aligned_cols=54 Identities=30% Similarity=0.373 Sum_probs=44.2
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc----ccccccchhhhHHHHHHHhh
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES----MIGLHESTKCAQIVKVSECQ 590 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~----~vG~sE~~~~~~ir~~F~~A 590 (594)
..++||+||||||||++|+++|...+.+|..++.+.+ |+|+.+.+ .+.++++.+
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~---~L~~~~~~~ 173 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVEN---ILLKLLQAA 173 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHH---HHHHHHHhC
Confidence 4689999999999999999999999999999987665 68886544 366666543
No 289
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.28 E-value=1.9e-05 Score=76.86 Aligned_cols=182 Identities=19% Similarity=0.210 Sum_probs=111.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhCCCCcE--EEecc-----hhhhcccch------------hHHHHHHHHHHHHhhccc
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLNGMEPK--IVNGP-----EVLSKFVGE------------TEKNIRDLFADAENDQRT 316 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~~~~~~--~v~~~-----~l~~~~~g~------------~~~~i~~lf~~a~~~~~~ 316 (594)
-+.++|+-|+|||+++|++...+++.... +++.+ .+...++.+ .+..-+.+.+...+.+
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~-- 130 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGK-- 130 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCC--
Confidence 36789999999999999887777544332 23322 222222111 1222333444444432
Q ss_pred cCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCccc-ccHHhhC-CCCcccee
Q 007661 317 RGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDM-LDEALLR-PGRLEVQV 394 (594)
Q Consensus 317 ~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~-ld~al~r-~gRf~~~i 394 (594)
.|.++++||++.+... ..+.+..|.+.-++....-.++.||-..--.. .-+.++- .-|++..|
T Consensus 131 -----r~v~l~vdEah~L~~~----------~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~ 195 (269)
T COG3267 131 -----RPVVLMVDEAHDLNDS----------ALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRI 195 (269)
T ss_pred -----CCeEEeehhHhhhChh----------HHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEE
Confidence 3679999999988521 22233333333222223334566654321111 1122221 11777778
Q ss_pred ecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 007661 395 EISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALN 455 (594)
Q Consensus 395 ~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~ 455 (594)
++++.+.++-...|+.+++.-.....+..+..+..+...+.| .++-+.++|..|...|..
T Consensus 196 ~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 196 ELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYS 255 (269)
T ss_pred ecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence 999999999999999999888766667777788889999998 556788888888877764
No 290
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=6.5e-07 Score=94.15 Aligned_cols=47 Identities=30% Similarity=0.505 Sum_probs=37.1
Q ss_pred cccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
.+|.| |.|.+..++.+ ..+- .-.+|+|++||||||||++|+.+...+
T Consensus 176 ~D~~D--V~GQ~~AKrAl-eiAA---------------AGgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 176 PDFKD--VKGQEQAKRAL-EIAA---------------AGGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred cchhh--hcCcHHHHHHH-HHHH---------------hcCCcEEEecCCCCchHHhhhhhcccC
Confidence 36777 99999988777 3322 234689999999999999999888766
No 291
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.25 E-value=9.2e-06 Score=81.63 Aligned_cols=166 Identities=18% Similarity=0.310 Sum_probs=102.8
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEE--ecchhhh---
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIV--NGPEVLS--- 293 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v--~~~~l~~--- 293 (594)
+-|+.++-+++ .+.+...+.+ .....+++.||.|+|||++........ .+..++.| ||.-..+
T Consensus 26 l~g~~~~~~~l-~~~lkqt~~~---------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 26 LFGVQDEQKHL-SELLKQTILH---------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred eeehHHHHHHH-HHHHHHHHHh---------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 56777776666 5555444333 234679999999999999877655441 23333333 3321111
Q ss_pred ----------------cccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHH
Q 007661 294 ----------------KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLT 357 (594)
Q Consensus 294 ----------------~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~ 357 (594)
+..|....++..+.+..+.... ..+.+.|.++||+|..++.. .+.++..|.+
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~---~t~~~ViFIldEfDlf~~h~---------rQtllYnlfD 163 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDE---TTSGKVIFILDEFDLFAPHS---------RQTLLYNLFD 163 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCC---CCCceEEEEeehhhccccch---------hhHHHHHHHH
Confidence 3445556666666666655322 23345677788999988542 2334444444
Q ss_pred hhcCccccCcEEEEEeeCCccc---ccHHhhCCCCccce-eecCCC-CHHHHHHHHHHHH
Q 007661 358 KIDGVESLNNVLLIGMTNRKDM---LDEALLRPGRLEVQ-VEISLP-DENGRLQILQIHT 412 (594)
Q Consensus 358 ~ld~~~~~~~v~vI~~tn~~~~---ld~al~r~gRf~~~-i~i~~P-~~~~r~~IL~~~~ 412 (594)
.-+ ..+..+.|||.|.+.+. +...+.+ ||... |.+.++ ...+-.++++..+
T Consensus 164 isq--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 164 ISQ--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHh--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 422 23568999999999765 5678877 88766 666555 5677778877665
No 292
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.25 E-value=3.8e-05 Score=84.21 Aligned_cols=212 Identities=16% Similarity=0.221 Sum_probs=112.4
Q ss_pred ccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEE-Eecchhh-
Q 007661 215 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI-VNGPEVL- 292 (594)
Q Consensus 215 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~-v~~~~l~- 292 (594)
+.++ +.-..+.++++ +.++...+. +..+.+-+||+||||||||++++.+|+++. ..+.. .+...+.
T Consensus 17 ~~~e--LavhkkKv~eV-~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg-~~v~Ew~np~~~~~ 84 (519)
T PF03215_consen 17 TLDE--LAVHKKKVEEV-RSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELG-FEVQEWINPVSFRE 84 (519)
T ss_pred CHHH--hhccHHHHHHH-HHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhC-CeeEEecCCCCccc
Confidence 4455 67777777777 777764332 223445678899999999999999999984 33332 2222210
Q ss_pred -----hcccchhH-----HHHHHHHHHH----Hhhccc--c--CCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHH
Q 007661 293 -----SKFVGETE-----KNIRDLFADA----ENDQRT--R--GDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQ 354 (594)
Q Consensus 293 -----~~~~g~~~-----~~i~~lf~~a----~~~~~~--~--~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~ 354 (594)
..|.+... ..-...|.+- .+.... . .....+.||+|||+-.++... ......++.+
T Consensus 85 ~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~------~~~f~~~L~~ 158 (519)
T PF03215_consen 85 SDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD------TSRFREALRQ 158 (519)
T ss_pred cccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh------HHHHHHHHHH
Confidence 01111100 0011123221 111000 1 122457899999998765221 1223333333
Q ss_pred HHHhhcCccccC-cEEEEEee-------CCc--------ccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccc--
Q 007661 355 LLTKIDGVESLN-NVLLIGMT-------NRK--------DMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMK-- 416 (594)
Q Consensus 355 Ll~~ld~~~~~~-~v~vI~~t-------n~~--------~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~-- 416 (594)
++.. ... .+++|.+- |.. ..+++.++...+. ..|.|.+-...-...-|+..+....
T Consensus 159 ~l~~-----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~ 232 (519)
T PF03215_consen 159 YLRS-----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARS 232 (519)
T ss_pred HHHc-----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhh
Confidence 3332 122 66666661 111 1356666654343 3688988888777777766655431
Q ss_pred --cCCCCCCccc-HHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 007661 417 --ENSFLAPDVN-LQELAARTKNYSGAELEGVAKSAVSFAL 454 (594)
Q Consensus 417 --~~~~l~~~~~-l~~la~~t~g~sg~dl~~l~~~A~~~a~ 454 (594)
.........+ ++.|+..+. .||+..+..-...+.
T Consensus 233 ~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 233 SSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred hcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 1111111222 677777654 499888877776666
No 293
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.24 E-value=8.9e-06 Score=80.03 Aligned_cols=127 Identities=24% Similarity=0.297 Sum_probs=74.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccch
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEID 332 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid 332 (594)
...+-.++||+|||||..++.+|+.+ +.++++.+|.+-++ ...+.++|.-+... .++++|||++
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~l-G~~~~vfnc~~~~~------~~~l~ril~G~~~~---------GaW~cfdefn 94 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARAL-GRFVVVFNCSEQMD------YQSLSRILKGLAQS---------GAWLCFDEFN 94 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCT-T--EEEEETTSSS-------HHHHHHHHHHHHHH---------T-EEEEETCC
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHh-CCeEEEeccccccc------HHHHHHHHHHHhhc---------Cchhhhhhhh
Confidence 34577899999999999999999999 67888899987654 34566777665553 2499999999
Q ss_pred hhhccCCCCCCCCchHHHHHHHHHHhh-cCc--------------cccCcEEEEEeeCCc----ccccHHhhCCCCccce
Q 007661 333 AICKSRGSTRDGTGVHDSIVNQLLTKI-DGV--------------ESLNNVLLIGMTNRK----DMLDEALLRPGRLEVQ 393 (594)
Q Consensus 333 ~l~~~~~~~~~~~~~~~~~v~~Ll~~l-d~~--------------~~~~~v~vI~~tn~~----~~ld~al~r~gRf~~~ 393 (594)
.|-. ++.. ++.+.+..+ +.+ .-..+.-++.|.|+. ..|++.|+.-+| .
T Consensus 95 rl~~---------~vLS-~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFR---p 161 (231)
T PF12774_consen 95 RLSE---------EVLS-VISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFR---P 161 (231)
T ss_dssp CSSH---------HHHH-HHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEE---E
T ss_pred hhhH---------HHHH-HHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhh---e
Confidence 9842 1222 222222222 111 112235566666642 358888886444 8
Q ss_pred eecCCCCHHHHHHHH
Q 007661 394 VEISLPDENGRLQIL 408 (594)
Q Consensus 394 i~i~~P~~~~r~~IL 408 (594)
+.+..||.+...+++
T Consensus 162 vam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 162 VAMMVPDLSLIAEIL 176 (231)
T ss_dssp EE--S--HHHHHHHH
T ss_pred eEEeCCCHHHHHHHH
Confidence 999999987665554
No 294
>PRK06851 hypothetical protein; Provisional
Probab=98.23 E-value=6.2e-06 Score=86.04 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=25.5
Q ss_pred eEEEeecCCCCchHHHHHHHHhhc---CCCEEEE
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDS---DFPFVKI 565 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~---~~~fi~v 565 (594)
.-++|.||||||||+|.+.+|.++ |+.....
T Consensus 215 ~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~ 248 (367)
T PRK06851 215 NRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVY 248 (367)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 448999999999999999999766 6665554
No 295
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=9e-06 Score=92.57 Aligned_cols=128 Identities=23% Similarity=0.327 Sum_probs=86.3
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhh-----
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLS----- 293 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~----- 293 (594)
|.|.++.+..| -+++...-. .+.+. ++.-.+||.||.|+|||-+|+++|..+- ...++.++.+++..
T Consensus 564 V~gQ~eAv~aI-a~AI~~sr~--gl~~~---~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 564 VIGQDEAVAAI-AAAIRRSRA--GLKDP---NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred ccchHHHHHHH-HHHHHhhhc--ccCCC---CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 88999988888 555543321 11010 4667799999999999999999999983 33566788776432
Q ss_pred ----cccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc------
Q 007661 294 ----KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE------ 363 (594)
Q Consensus 294 ----~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~------ 363 (594)
.|.|..+- ..+.+..++.. .+||+|||||.- +-.+++.|+..+|..+
T Consensus 638 gsp~gyvG~e~g--g~LteavrrrP--------~sVVLfdeIEkA-------------h~~v~n~llq~lD~GrltDs~G 694 (898)
T KOG1051|consen 638 GSPPGYVGKEEG--GQLTEAVKRRP--------YSVVLFEEIEKA-------------HPDVLNILLQLLDRGRLTDSHG 694 (898)
T ss_pred CCCcccccchhH--HHHHHHHhcCC--------ceEEEEechhhc-------------CHHHHHHHHHHHhcCccccCCC
Confidence 45665542 35555555543 459999999963 3456777777777432
Q ss_pred ---ccCcEEEEEeeCCc
Q 007661 364 ---SLNNVLLIGMTNRK 377 (594)
Q Consensus 364 ---~~~~v~vI~~tn~~ 377 (594)
+..|++||.|+|.-
T Consensus 695 r~Vd~kN~I~IMTsn~~ 711 (898)
T KOG1051|consen 695 REVDFKNAIFIMTSNVG 711 (898)
T ss_pred cEeeccceEEEEecccc
Confidence 23478999998863
No 296
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.19 E-value=4.3e-06 Score=90.96 Aligned_cols=179 Identities=23% Similarity=0.225 Sum_probs=99.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhhcccchhHHHHHHHHHHHHhh-------ccccCCCCCc
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGETEKNIRDLFADAEND-------QRTRGDQSDL 323 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~-------~~~~~~~~~~ 323 (594)
....++++|.+||||+++|+++..... ..+++.++|..+..... -..+|...... ..........
T Consensus 161 ~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 234 (441)
T PRK10365 161 SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLL------ESELFGHEKGAFTGADKRREGRFVEADG 234 (441)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHH------HHHhcCCCCCCcCCCCcCCCCceeECCC
Confidence 345799999999999999999987653 35788899986543211 11122211100 0000011123
Q ss_pred EEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc---------ccCcEEEEEeeCCcccccHHhhCCCCccc--
Q 007661 324 HVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE---------SLNNVLLIGMTNRKDMLDEALLRPGRLEV-- 392 (594)
Q Consensus 324 ~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~---------~~~~v~vI~~tn~~~~ld~al~r~gRf~~-- 392 (594)
.+|||||++.+.+ .....|+..++.-. ...++.+|++|+..- . ....+|+|..
T Consensus 235 gtl~ldei~~l~~-------------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~--~-~~~~~~~~~~~l 298 (441)
T PRK10365 235 GTLFLDEIGDISP-------------MMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL--A-AEVNAGRFRQDL 298 (441)
T ss_pred CEEEEeccccCCH-------------HHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCH--H-HHHHcCCchHHH
Confidence 4899999999863 23344555554211 012577888887642 1 2222344421
Q ss_pred -----eeecCCCCHHHH----HHHHHHHHhcccc----CCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 007661 393 -----QVEISLPDENGR----LQILQIHTNKMKE----NSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFA 453 (594)
Q Consensus 393 -----~i~i~~P~~~~r----~~IL~~~~~~~~~----~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a 453 (594)
.+.+.+|...+| ..+.+.++++... ...-.++..+..|.....--+.++|+++++.|...+
T Consensus 299 ~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~ 372 (441)
T PRK10365 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLL 372 (441)
T ss_pred HHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC
Confidence 345556655555 3444555444321 111123344566666654457799999999887543
No 297
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.17 E-value=1.6e-06 Score=81.38 Aligned_cols=40 Identities=38% Similarity=0.456 Sum_probs=35.4
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcCC----CEEEEeccccc
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSDF----PFVKIISAESM 571 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~~----~fi~v~~~e~~ 571 (594)
+|...+||+||+|||||.||++||..... +++.+++++.-
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~ 44 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYS 44 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccc
Confidence 57889999999999999999999999997 99999999864
No 298
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.14 E-value=6.3e-06 Score=82.32 Aligned_cols=138 Identities=19% Similarity=0.245 Sum_probs=85.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhCCC-CcE----EEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEcc
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLNGM-EPK----IVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 330 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~~~-~~~----~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDE 330 (594)
+.|+|||||||||+...+.|..+.+. .+- ..+.++-.+- ...+.-...|..+..-+-.. ...++..+++||
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgi---d~vr~qi~~fast~~~~~fs-t~~~fKlvILDE 139 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGI---DPVRQQIHLFASTQQPTTYS-THAAFKLVILDE 139 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCC---cchHHHHHHHHhhccceecc-ccCceeEEEecc
Confidence 78999999999999999999998652 111 1122211110 12233344555554321111 123577999999
Q ss_pred chhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHH
Q 007661 331 IDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQI 410 (594)
Q Consensus 331 id~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~ 410 (594)
+|++. ....++|...+.... .++.++..+|.+..+.|++++ |+. .+.+.+.+.+.....+..
T Consensus 140 ADaMT-------------~~AQnALRRviek~t--~n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~sh 201 (360)
T KOG0990|consen 140 ADAMT-------------RDAQNALRRVIEKYT--ANTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSH 201 (360)
T ss_pred hhHhh-------------HHHHHHHHHHHHHhc--cceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHH
Confidence 99974 233344444444332 366677778999999999987 544 355666677777777777
Q ss_pred HHhcc
Q 007661 411 HTNKM 415 (594)
Q Consensus 411 ~~~~~ 415 (594)
++..-
T Consensus 202 i~e~e 206 (360)
T KOG0990|consen 202 IRESE 206 (360)
T ss_pred HHhcc
Confidence 76543
No 299
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=2.5e-06 Score=84.95 Aligned_cols=53 Identities=30% Similarity=0.395 Sum_probs=45.2
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc----ccccccchhhhHHHHHHHhh
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES----MIGLHESTKCAQIVKVSECQ 590 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~----~vG~sE~~~~~~ir~~F~~A 590 (594)
++|||.||+|||||+||+.||...+.||---+...+ ||||--.| .|-++.+.|
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVEN---illkLlqaa 154 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVEN---ILLKLLQAA 154 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHH---HHHHHHHHc
Confidence 569999999999999999999999999998888887 79987665 466666544
No 300
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.11 E-value=6.1e-05 Score=76.83 Aligned_cols=158 Identities=14% Similarity=0.123 Sum_probs=82.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHh--hCCCC--cEEEecchhhh----------c---c------cchhHHHHHHHHH
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKM--LNGME--PKIVNGPEVLS----------K---F------VGETEKNIRDLFA 308 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~--l~~~~--~~~v~~~~l~~----------~---~------~g~~~~~i~~lf~ 308 (594)
...+-|.|+|++|+|||++|+.+++. ....+ ++.++...-.. . . ....+.....+.+
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 45567999999999999999999987 43322 23333322111 0 0 0112222233332
Q ss_pred HHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCC
Q 007661 309 DAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPG 388 (594)
Q Consensus 309 ~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~g 388 (594)
.... .+++|+||+++... .+..+...+.. ...+..||.||.... +-.....
T Consensus 97 ~L~~---------~~~LlVlDdv~~~~---------------~~~~l~~~~~~--~~~~~kilvTTR~~~-v~~~~~~-- 147 (287)
T PF00931_consen 97 LLKD---------KRCLLVLDDVWDEE---------------DLEELREPLPS--FSSGSKILVTTRDRS-VAGSLGG-- 147 (287)
T ss_dssp HHCC---------TSEEEEEEEE-SHH---------------HH-------HC--HHSS-EEEEEESCGG-GGTTHHS--
T ss_pred hhcc---------ccceeeeeeecccc---------------ccccccccccc--ccccccccccccccc-ccccccc--
Confidence 2222 25699999988642 22222222211 123566777776643 2222221
Q ss_pred CccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCH
Q 007661 389 RLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSG 439 (594)
Q Consensus 389 Rf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg 439 (594)
-...++++..+.++-.++|+.+............+....++++.+.|...
T Consensus 148 -~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 197 (287)
T PF00931_consen 148 -TDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPL 197 (287)
T ss_dssp -CEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HH
T ss_pred -cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 14589999999999999999886543300001122346788999887553
No 301
>PF02933 CDC48_2: Cell division protein 48 (CDC48), domain 2; InterPro: IPR004201 This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C terminus. The VAT-N domain found in AAA ATPases (IPR003959 from INTERPRO) is a substrate 185-residue recognition domain [].; GO: 0005524 ATP binding; PDB: 1QDN_B 1QCS_A 1CR5_C 3QQ8_A 3HU2_A 3HU1_E 3HU3_A 3QWZ_A 3TIW_B 3QQ7_A ....
Probab=98.11 E-value=1e-05 Score=62.77 Aligned_cols=59 Identities=22% Similarity=0.371 Sum_probs=51.5
Q ss_pred ccHHHHHHHHHHHhccCcccCCcEEEEEEcCeeEEEEEEEeeecCccccccccceeEcCCcEEEEEec
Q 007661 123 VDAVLLANQLRKRFINQVMTAGQRVVFEYHGNNYIFTVNGAAVEGQEKSNALERGIITNETYFVFEAS 190 (594)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 190 (594)
+|.+.++ +|+++|.|++|+.||.+.+.+.|..+.|+|++++| .+.+.++++|.|.+...
T Consensus 2 ~d~d~~~-~~~~~l~~~pv~~Gd~i~~~~~~~~~~~~V~~~~P--------~~~v~it~~T~i~i~~~ 60 (64)
T PF02933_consen 2 FDGDFMA-YFKRQLEGRPVTKGDTIVFPFFGQALPFKVVSTEP--------SGPVIITEDTEIEIKEE 60 (64)
T ss_dssp ECSHHHH-HHHHHHTTEEEETT-EEEEEETTEEEEEEEEEECS--------SSEEEEETTSEEEESST
T ss_pred CCccHHH-HHHHHHcCCCccCCCEEEEEeCCcEEEEEEEEEEc--------CCCEEECCCcEEEEccc
Confidence 5666677 99999999999999999999999999999999999 55889999999988643
No 302
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=98.10 E-value=5.9e-05 Score=92.40 Aligned_cols=307 Identities=19% Similarity=0.236 Sum_probs=159.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHH-HHHhhcccc-C-CCCCcEEEEEccc
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFA-DAENDQRTR-G-DQSDLHVIIFDEI 331 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~-~a~~~~~~~-~-~~~~~~Il~iDEi 331 (594)
+.++++||+|+|||.++..............++.+. ...+ .....++. .+....+.. + ....--++|+||+
T Consensus 128 k~~~~~g~~g~gk~~~~~~~~~~~~~~~~~~~~fs~-----~ts~-~~~q~~~~~~~~k~~~~~~~~~~~~~~~~f~ddi 201 (1395)
T KOG3595|consen 128 KPVLLVGPTGTGKTVLVLSELRSLQDREVYLLNFSS-----VTSS-ELLQEIIESKLDKRRSGNYGPPLGKKLVLFVDDI 201 (1395)
T ss_pred CeEEEEcCCCCCeeeehHHHHHhcccchheEEeeee-----eccH-HHHHHHHHHHHHHhcccCCCCCCCceeEEEEecc
Confidence 689999999999999998887765433322232221 1111 22222222 122111111 1 1111249999999
Q ss_pred hhhhccCCCCCCCCchHHHHHHHHHHhhcCc-------cccCcEEEEEeeCCcc----cccHHhhCCCCccceeecCCCC
Q 007661 332 DAICKSRGSTRDGTGVHDSIVNQLLTKIDGV-------ESLNNVLLIGMTNRKD----MLDEALLRPGRLEVQVEISLPD 400 (594)
Q Consensus 332 d~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~-------~~~~~v~vI~~tn~~~----~ld~al~r~gRf~~~i~i~~P~ 400 (594)
+.......+. ...-.++.+++...--. ..--++.++++.+.|. .+.+.+.| .|. .+.+..|+
T Consensus 202 nmp~~~~yg~----q~~~~~lrq~~e~~g~~~~~~~~~~~i~~i~~~~a~~~~~~gr~~i~~r~~r--~f~-~~~~~~~~ 274 (1395)
T KOG3595|consen 202 NMPALDKYGD----QPPIELLRQMLEHGGFYDRKKSEWVEIENVQLVGAMNPPGGGRNDITERFLR--HFL-IVSLNYPS 274 (1395)
T ss_pred CCchhhhcCC----ccHHHHHHHHHHhceeecccccceeEEeeeEEEeecCCCCCccCcccHHHHH--Hee-eEeeCCCC
Confidence 9866544332 23445666665543211 1123689999999753 36777776 443 68899999
Q ss_pred HHHHHHHHHHHHhccccCCCCCCcc--cHHHHHHHcC-------------------CCCHHHHHHHH-------------
Q 007661 401 ENGRLQILQIHTNKMKENSFLAPDV--NLQELAARTK-------------------NYSGAELEGVA------------- 446 (594)
Q Consensus 401 ~~~r~~IL~~~~~~~~~~~~l~~~~--~l~~la~~t~-------------------g~sg~dl~~l~------------- 446 (594)
.+..-+|+..++..+.. ..... ....++..+. =|+.+|+..++
T Consensus 275 ~~sl~~if~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~hyv~~lrd~~r~~~~i~~~~~~~~~~ 351 (1395)
T KOG3595|consen 275 QESLTQIFNTILTGHLR---FAPAFRTSIEPIVNASVDFYPKVQENFLPTPSKSHYVFNLRDLSRVVQGILLAVSEALLT 351 (1395)
T ss_pred hhhHHHHHHHHHhcccC---ccHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCcceeeechhhhhhheeehcccCcHhhcc
Confidence 99999999988766532 00000 0111111110 02334443322
Q ss_pred -----HHHHHHHH----HhccCcccCCCCcccchhhcchhHHHHHHHhcccCCC-------c-----------CCccccc
Q 007661 447 -----KSAVSFAL----NRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAFG-------A-----------STDDLER 499 (594)
Q Consensus 447 -----~~A~~~a~----~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ps~~-------~-----------~~~~~~~ 499 (594)
+.+.+.+. .|.+. ..+.....+.+...+...-+... . ....++.
T Consensus 352 ~~~l~~~~~~e~~rv~~drlv~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 422 (1395)
T KOG3595|consen 352 LEDLIRLWVHEAIRVFADRLVD---------DEDRQWFDKKLQEVLLKLFEADSLQMPLLYGDFRSESHKIYEEVLSVEL 422 (1395)
T ss_pred HHHHHHHHHHHHHHhhhhhccc---------HHHHHHHHHHHHHHHHHHhhhhhhcCCceeeecccccccccCchHhHHH
Confidence 22222221 12211 11112222222222222111110 0 0000000
Q ss_pred c---------ccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc
Q 007661 500 S---------RLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES 570 (594)
Q Consensus 500 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~ 570 (594)
. ..+ .........-++.+...+.-.+.+...+|.++.|+.|-.|+||+.+.+..|...++.++.+.....
T Consensus 423 l~~~~~~~l~~~~-~~~~~~~~lvlf~~~~~h~~ri~ril~~~~g~~llvgv~g~gkqsl~r~~~~~~~~~~fq~~~~~~ 501 (1395)
T KOG3595|consen 423 LRGVLEAYLKQFN-IEEIRPMHLVLFRDAIEHVLRIDRILRQPRGHALLVGVGGSGKQSLTRLAAFINGLSVFQIEITRS 501 (1395)
T ss_pred HHHHHHHHHHHHh-hhccCCCceeeeHHHhhhhhhhHHHhcCCCccEEEeecCCCCcccHHHHHHhhccccceeeecccc
Confidence 0 000 011111111233444455555667778999999999999999999999999999999999999999
Q ss_pred ccccccchhhhHHHHHHHhh
Q 007661 571 MIGLHESTKCAQIVKVSECQ 590 (594)
Q Consensus 571 ~vG~sE~~~~~~ir~~F~~A 590 (594)
|.++.-.. .++.+.++|
T Consensus 502 y~~~~~~~---dl~~~~r~~ 518 (1395)
T KOG3595|consen 502 YNIEDFRE---DLKAILRKA 518 (1395)
T ss_pred CcHHHHHH---HHHHHHHHh
Confidence 86654333 266555554
No 303
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.09 E-value=2.2e-05 Score=87.32 Aligned_cols=199 Identities=13% Similarity=0.100 Sum_probs=111.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhhCC-CCcEEEecchhhhcccchhHHHHHHHHHHHHh-hccccCCCCCcEEEEEccch
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKMLNG-MEPKIVNGPEVLSKFVGETEKNIRDLFADAEN-DQRTRGDQSDLHVIIFDEID 332 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l~~-~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~-~~~~~~~~~~~~Il~iDEid 332 (594)
.||+|.|++||+||+++++++..+.. .++..+...--....+|.. .+...+..-.. ..|........-|||+||++
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~--Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n 103 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGL--DLAATLRAGRPVAQRGLLAEADGGVLVLAMAE 103 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCc--hHHhHhhcCCcCCCCCceeeccCCEEEecCcc
Confidence 48999999999999999999999864 2333322211111222221 01111111110 11111111112399999999
Q ss_pred hhhccCCCCCCCCchHHHHHHHHHHhhcCc-----------cccCcEEEEEeeCCc---ccccHHhhCCCCccceeecCC
Q 007661 333 AICKSRGSTRDGTGVHDSIVNQLLTKIDGV-----------ESLNNVLLIGMTNRK---DMLDEALLRPGRLEVQVEISL 398 (594)
Q Consensus 333 ~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~-----------~~~~~v~vI~~tn~~---~~ld~al~r~gRf~~~i~i~~ 398 (594)
.+- ..+++.|+.-|+.- ....++++|++.|.. ..|.++++. ||+..++++.
T Consensus 104 ~~~-------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~ 168 (584)
T PRK13406 104 RLE-------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDG 168 (584)
T ss_pred cCC-------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCC
Confidence 763 56788888888631 123468889874432 238888988 9999999999
Q ss_pred CCHHHH-------HHHHHHHHhccccCCCCCCcccHHHHHHHc--CCC-CHHHHHHHHHHHHHHHHHhccCcccCCCCcc
Q 007661 399 PDENGR-------LQILQIHTNKMKENSFLAPDVNLQELAART--KNY-SGAELEGVAKSAVSFALNRQLSMDDLTKPVD 468 (594)
Q Consensus 399 P~~~~r-------~~IL~~~~~~~~~~~~l~~~~~l~~la~~t--~g~-sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~ 468 (594)
|+..+. .+|.+..- .+. +. ..++..+.+++..+ .|. +.+--..+++.|...|.-
T Consensus 169 ~~~~~~~~~~~~~~~I~~AR~-rl~-~v-~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL------------- 232 (584)
T PRK13406 169 LALRDAREIPIDADDIAAARA-RLP-AV-GPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAAL------------- 232 (584)
T ss_pred CChHHhcccCCCHHHHHHHHH-HHc-cC-CCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHH-------------
Confidence 876542 23333222 111 11 12333344444332 233 445555566666655543
Q ss_pred cchhhcchhHHHHHHHhc
Q 007661 469 EESIKVTMDDFLHALYEI 486 (594)
Q Consensus 469 ~~~~~vt~~df~~al~~~ 486 (594)
.+...|+.+|+.+|+.-+
T Consensus 233 ~Gr~~V~~~dv~~Aa~lv 250 (584)
T PRK13406 233 AGRTAVEEEDLALAARLV 250 (584)
T ss_pred cCCCCCCHHHHHHHHHHH
Confidence 234568888888887754
No 304
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.08 E-value=3e-06 Score=76.68 Aligned_cols=36 Identities=33% Similarity=0.490 Sum_probs=32.6
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM 571 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~ 571 (594)
+|||+||||||||+||+.+|...+.+++.+.++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~ 36 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDT 36 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTS
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEecccc
Confidence 489999999999999999999999999999988763
No 305
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.07 E-value=1.2e-05 Score=83.35 Aligned_cols=56 Identities=16% Similarity=0.126 Sum_probs=42.8
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcCC-------CEEEEec----cccc---cccccchhhhHHHHHHHhhh
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSDF-------PFVKIIS----AESM---IGLHESTKCAQIVKVSECQF 591 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~~-------~fi~v~~----~e~~---vG~sE~~~~~~ir~~F~~A~ 591 (594)
.+..-++|+||||||||+||++||...+. ++.++++ +... +|---.. +|+.|.+.+
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~Pl~l~p~~----~r~~~~~~~ 145 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHEDPLHLFPDE----LREDLEDEY 145 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccCCcccCCHH----HHHHHHHHh
Confidence 34567899999999999999999999987 9999999 5553 3332333 777776554
No 306
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.07 E-value=4.9e-06 Score=84.09 Aligned_cols=50 Identities=28% Similarity=0.387 Sum_probs=40.1
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcCCC---EEEEeccccccccccchhhhHHHHHHHhhhc
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSDFP---FVKIISAESMIGLHESTKCAQIVKVSECQFS 592 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~~~---fi~v~~~e~~vG~sE~~~~~~ir~~F~~A~~ 592 (594)
-++.|+||||||||+||+.||+.+.-+ ||.+.... ++.+.+|++|++|.+
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~--------a~t~dvR~ife~aq~ 215 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN--------AKTNDVRDIFEQAQN 215 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc--------cchHHHHHHHHHHHH
Confidence 458999999999999999999988877 77665432 234569999999864
No 307
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.06 E-value=7.1e-06 Score=85.66 Aligned_cols=40 Identities=30% Similarity=0.346 Sum_probs=35.3
Q ss_pred CCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc
Q 007661 531 GSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES 570 (594)
Q Consensus 531 ~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~ 570 (594)
..++.++|||||||||||++|+++|++.+.++..+.++..
T Consensus 48 ~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~ 87 (328)
T PRK00080 48 GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPAL 87 (328)
T ss_pred CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccc
Confidence 3566789999999999999999999999999988887743
No 308
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.06 E-value=3.5e-06 Score=82.75 Aligned_cols=60 Identities=28% Similarity=0.398 Sum_probs=48.4
Q ss_pred CCCcceEEEeecCCCCchHHHHHHHHhhc--CCCEEEEeccccccccccchhhhHHHHHHHhhh
Q 007661 530 KGSPLVTCLLEGPSGSGKTALAATAGIDS--DFPFVKIISAESMIGLHESTKCAQIVKVSECQF 591 (594)
Q Consensus 530 ~~~p~~gvLL~GPpG~GKT~lAkalA~~~--~~~fi~v~~~e~~vG~sE~~~~~~ir~~F~~A~ 591 (594)
.....+.+||.||||||||+||-+++.|. +.||..+.|+|+| -+|-.|-..+-+-|++|-
T Consensus 60 KkmaGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvy--S~EvKKTEvLmenfRRaI 121 (456)
T KOG1942|consen 60 KKMAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVY--SNEVKKTEVLMENFRRAI 121 (456)
T ss_pred hhccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhh--hhhhhHHHHHHHHHHHHh
Confidence 34456789999999999999999999887 5899999999999 233333344888898873
No 309
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.05 E-value=2.6e-06 Score=74.77 Aligned_cols=36 Identities=33% Similarity=0.468 Sum_probs=25.4
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEEec-cccc
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKIIS-AESM 571 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~-~e~~ 571 (594)
+|||.|+||+|||++|+++|...|..|.+|-. |+++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdll 37 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLL 37 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCC
Confidence 48999999999999999999999999999966 4554
No 310
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.05 E-value=9.9e-06 Score=82.30 Aligned_cols=131 Identities=21% Similarity=0.369 Sum_probs=73.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh-------cccchhHHHHHHHHHHHHhhccccCCCCC
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS-------KFVGETEKNIRDLFADAENDQRTRGDQSD 322 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~-------~~~g~~~~~i~~lf~~a~~~~~~~~~~~~ 322 (594)
...+++|+.|||+-|+|||+|.-...+.+....-..+.-.+++. ...|++ .-+..+-++..++
T Consensus 61 ~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~~~~--------- 130 (367)
T COG1485 61 DHGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADELAAE--------- 130 (367)
T ss_pred CCCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHHHhc---------
Confidence 34588999999999999999999999988543322233233332 122333 1222222222222
Q ss_pred cEEEEEccchhhhccCCCCCCCCchHH-HHHHHHHHhhcCccccCcEEEEEeeCCc-ccccHHhhCCCCccceeecCCCC
Q 007661 323 LHVIIFDEIDAICKSRGSTRDGTGVHD-SIVNQLLTKIDGVESLNNVLLIGMTNRK-DMLDEALLRPGRLEVQVEISLPD 400 (594)
Q Consensus 323 ~~Il~iDEid~l~~~~~~~~~~~~~~~-~~v~~Ll~~ld~~~~~~~v~vI~~tn~~-~~ld~al~r~gRf~~~i~i~~P~ 400 (594)
-.+|+|||++.= ...+ .++..|++.+= ..+|++++|+|.+ +.|-+.=+.+.||-.
T Consensus 131 ~~vLCfDEF~Vt-----------DI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~P~~LY~dGlqR~~FLP-------- 187 (367)
T COG1485 131 TRVLCFDEFEVT-----------DIADAMILGRLLEALF----ARGVVLVATSNTAPDNLYKDGLQRERFLP-------- 187 (367)
T ss_pred CCEEEeeeeeec-----------ChHHHHHHHHHHHHHH----HCCcEEEEeCCCChHHhcccchhHHhhHH--------
Confidence 129999999751 2223 34555655543 1489999999984 333222222223322
Q ss_pred HHHHHHHHHHHHhccc
Q 007661 401 ENGRLQILQIHTNKMK 416 (594)
Q Consensus 401 ~~~r~~IL~~~~~~~~ 416 (594)
-.++|+.++.-+.
T Consensus 188 ---~I~li~~~~~v~~ 200 (367)
T COG1485 188 ---AIDLIKSHFEVVN 200 (367)
T ss_pred ---HHHHHHHheEEEE
Confidence 1366777776655
No 311
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.04 E-value=5e-05 Score=68.77 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=24.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhCC
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNG 280 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~~ 280 (594)
+....|.+.|+||+||||++..++..+..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 34567999999999999999999988853
No 312
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=98.03 E-value=7.1e-05 Score=87.00 Aligned_cols=151 Identities=17% Similarity=0.190 Sum_probs=85.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHH-HHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCC-------CC
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMA-RQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGD-------QS 321 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~la-r~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~-------~~ 321 (594)
.+...++++++||||+|||++. -++-.++ ...++.+|-+.. .+...+-.+++.-..+.|..|. .-
T Consensus 1490 ~lnt~R~~i~cGppGSgK~mlM~~sLrs~~-~~ev~~~Nfs~~------t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~v 1562 (3164)
T COG5245 1490 ALNTLRSYIYCGPPGSGKEMLMCPSLRSEL-ITEVKYFNFSTC------TMTPSKLSVLERETEYYPNTGVVRLYPKPVV 1562 (3164)
T ss_pred HHhccceEEEECCCCCccchhcchhhhhhh-heeeeEEeeccc------cCCHHHHHHHHhhceeeccCCeEEEccCcch
Confidence 4566789999999999999964 3444443 344555554322 1222233333433333333110 00
Q ss_pred CcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc--------ccCcEEEEEeeCCcccc-----cHHhhCCC
Q 007661 322 DLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE--------SLNNVLLIGMTNRKDML-----DEALLRPG 388 (594)
Q Consensus 322 ~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~--------~~~~v~vI~~tn~~~~l-----d~al~r~g 388 (594)
.--|||.|||+ + |....... +..--.+.+|+.. +|+. .-.++++.|++|++.+. ...+.|
T Consensus 1563 K~lVLFcDeIn-L-p~~~~y~~--~~vI~FlR~l~e~-QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r-- 1635 (3164)
T COG5245 1563 KDLVLFCDEIN-L-PYGFEYYP--PTVIVFLRPLVER-QGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIR-- 1635 (3164)
T ss_pred hheEEEeeccC-C-ccccccCC--CceEEeeHHHHHh-cccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhc--
Confidence 11289999999 3 33222111 1111112333332 3332 23579999999998753 345554
Q ss_pred CccceeecCCCCHHHHHHHHHHHHhcc
Q 007661 389 RLEVQVEISLPDENGRLQILQIHTNKM 415 (594)
Q Consensus 389 Rf~~~i~i~~P~~~~r~~IL~~~~~~~ 415 (594)
-...+....|......+|.++++.+.
T Consensus 1636 -~~v~vf~~ype~~SL~~Iyea~l~~s 1661 (3164)
T COG5245 1636 -KPVFVFCCYPELASLRNIYEAVLMGS 1661 (3164)
T ss_pred -CceEEEecCcchhhHHHHHHHHHHHH
Confidence 34578899999999999999877653
No 313
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.03 E-value=2.1e-05 Score=85.56 Aligned_cols=193 Identities=22% Similarity=0.257 Sum_probs=109.9
Q ss_pred cCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC-CCCcEEEecchhhhcc-----
Q 007661 222 GGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN-GMEPKIVNGPEVLSKF----- 295 (594)
Q Consensus 222 gGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~-~~~~~~v~~~~l~~~~----- 295 (594)
++++..++.+++.+-... ...-.+||.|.|||||-.++|++.+... ..+++.+||..+....
T Consensus 316 ~~~d~s~a~l~rk~~rv~------------~~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesEL 383 (606)
T COG3284 316 PLLDPSRATLLRKAERVA------------ATDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESEL 383 (606)
T ss_pred cccCHHHHHHHHHHHHHh------------hcCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHH
Confidence 456666666655443222 2234699999999999999999997764 3467889997665521
Q ss_pred c--------chhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcC------
Q 007661 296 V--------GETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG------ 361 (594)
Q Consensus 296 ~--------g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~------ 361 (594)
+ |...+..+..++.|..+ .+|+|||..+. -.+...||..+..
T Consensus 384 FGy~~GafTga~~kG~~g~~~~A~gG-----------tlFldeIgd~p-------------~~~Qs~LLrVl~e~~v~p~ 439 (606)
T COG3284 384 FGYVAGAFTGARRKGYKGKLEQADGG-----------TLFLDEIGDMP-------------LALQSRLLRVLQEGVVTPL 439 (606)
T ss_pred hccCccccccchhccccccceecCCC-----------ccHHHHhhhch-------------HHHHHHHHHHHhhCceecc
Confidence 1 11222233333333333 89999998774 2244455555542
Q ss_pred --ccccCcEEEEEeeCCcccccHHhhCCCCccc-------eeecCCCCHH---HHHHHHHHHHhccccC-CCCCCcccHH
Q 007661 362 --VESLNNVLLIGMTNRKDMLDEALLRPGRLEV-------QVEISLPDEN---GRLQILQIHTNKMKEN-SFLAPDVNLQ 428 (594)
Q Consensus 362 --~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~-------~i~i~~P~~~---~r~~IL~~~~~~~~~~-~~l~~~~~l~ 428 (594)
-...-+|.||++|+++ -..|.+.|||-. -+.|.+|... ++...|..++++.... ..+.++ -+.
T Consensus 440 g~~~~~vdirvi~ath~d---l~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~-~~~ 515 (606)
T COG3284 440 GGTRIKVDIRVIAATHRD---LAQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDD-ALA 515 (606)
T ss_pred CCcceeEEEEEEeccCcC---HHHHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHH-HHH
Confidence 1222268999999985 234455566542 2334455444 4445555554443321 112222 233
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHH
Q 007661 429 ELAARTKNYSGAELEGVAKSAVSFAL 454 (594)
Q Consensus 429 ~la~~t~g~sg~dl~~l~~~A~~~a~ 454 (594)
.|-..-.--+-++|.++.+.++..+-
T Consensus 516 ~l~~~~WPGNirel~~v~~~~~~l~~ 541 (606)
T COG3284 516 RLLAYRWPGNIRELDNVIERLAALSD 541 (606)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHcCC
Confidence 33333222367999999998886553
No 314
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.03 E-value=1.4e-05 Score=88.48 Aligned_cols=39 Identities=21% Similarity=0.097 Sum_probs=29.8
Q ss_pred cCCCcceEEEeecCCCCchHHHHHHHHhh---cCCCEEEEec
Q 007661 529 SKGSPLVTCLLEGPSGSGKTALAATAGID---SDFPFVKIIS 567 (594)
Q Consensus 529 ~~~~p~~gvLL~GPpG~GKT~lAkalA~~---~~~~fi~v~~ 567 (594)
.+..+...+|++||||||||++|..++.+ .|-+.+.+..
T Consensus 268 GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~ 309 (509)
T PRK09302 268 GGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAF 309 (509)
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 45566677899999999999999988854 3666666643
No 315
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=8e-06 Score=81.94 Aligned_cols=58 Identities=24% Similarity=0.331 Sum_probs=45.1
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc-cccccchhhhHHHHHHHhh
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM-IGLHESTKCAQIVKVSECQ 590 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~-vG~sE~~~~~~ir~~F~~A 590 (594)
.|++||+.||+|+|||.+|+.||..++.|||+|.....- ||+--+..-+.||++-+-|
T Consensus 49 ~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGrDVesivRDLve~a 107 (444)
T COG1220 49 TPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVEIA 107 (444)
T ss_pred CccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeecccccccHHHHHHHHHHHH
Confidence 468999999999999999999999999999999776652 3332233333588877665
No 316
>PHA00729 NTP-binding motif containing protein
Probab=98.00 E-value=2e-05 Score=76.57 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l 278 (594)
.+|+|+|+||||||++|.++++.+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999986
No 317
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.99 E-value=9.4e-06 Score=72.28 Aligned_cols=60 Identities=20% Similarity=0.149 Sum_probs=42.3
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCC---EEEEeccccccc-------------cccchhhhHHHHHHHhhhcC
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFP---FVKIISAESMIG-------------LHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~---fi~v~~~e~~vG-------------~sE~~~~~~ir~~F~~A~~~ 593 (594)
...++|+||||||||++++.+|...... ++.+......-. .........++.+++.|+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKL 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhc
Confidence 3568999999999999999999998886 777777654310 00111122377888888764
No 318
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.98 E-value=1.7e-05 Score=68.44 Aligned_cols=23 Identities=43% Similarity=0.931 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhC
Q 007661 257 MLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 257 iLL~GppGtGKT~lar~ia~~l~ 279 (594)
|.||||||+|||++|+.+++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998873
No 319
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.97 E-value=6.7e-06 Score=84.16 Aligned_cols=42 Identities=17% Similarity=0.346 Sum_probs=37.1
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc-----cccc
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM-----IGLH 575 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~-----vG~s 575 (594)
.++|||.||||||||++|+++|...+.+|++|.+.+.+ +|..
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~ 110 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKD 110 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCc
Confidence 45799999999999999999999999999999877663 7753
No 320
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.95 E-value=5.6e-05 Score=76.43 Aligned_cols=125 Identities=10% Similarity=0.122 Sum_probs=81.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhCCCCcE-------EEecchhhhcc-cc----hhHHHHHHHHHHHHhhccccCCC
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK-------IVNGPEVLSKF-VG----ETEKNIRDLFADAENDQRTRGDQ 320 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~~~~~~-------~v~~~~l~~~~-~g----~~~~~i~~lf~~a~~~~~~~~~~ 320 (594)
-+...||+||+|+||+++|.++|..+-+...- .-+-||+.--. .+ -.-..+|++.+.+... |..+
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~-p~e~-- 94 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIH-PYES-- 94 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhC-ccCC--
Confidence 34578999999999999999999988542100 00112221100 11 1244566666655443 2222
Q ss_pred CCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCC
Q 007661 321 SDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLP 399 (594)
Q Consensus 321 ~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P 399 (594)
...|++||++|.+- ....+.||..++. +..++++|..|+.++.+.|.+++++. .+.|+++
T Consensus 95 -~~kv~ii~~ad~mt-------------~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~SRcq---~~~~~~~ 154 (290)
T PRK05917 95 -PYKIYIIHEADRMT-------------LDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRSRSL---SIHIPME 154 (290)
T ss_pred -CceEEEEechhhcC-------------HHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHhcce---EEEccch
Confidence 34599999999984 3355778888774 55688999999999999999988333 5566654
No 321
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.95 E-value=2.2e-05 Score=72.38 Aligned_cols=33 Identities=33% Similarity=0.553 Sum_probs=25.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecc
Q 007661 257 MLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGP 289 (594)
Q Consensus 257 iLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~ 289 (594)
++++||||+|||++++.++.... +..+.+++..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 68999999999999999998873 3344455443
No 322
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.95 E-value=1.3e-05 Score=80.83 Aligned_cols=36 Identities=33% Similarity=0.481 Sum_probs=32.9
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES 570 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~ 570 (594)
..+||+||||||||++|+++|...|.+|+.+.+.+.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~ 57 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAE 57 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 458999999999999999999999999999987654
No 323
>PRK04195 replication factor C large subunit; Provisional
Probab=97.95 E-value=1.5e-05 Score=87.60 Aligned_cols=38 Identities=32% Similarity=0.526 Sum_probs=34.8
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccc
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAE 569 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e 569 (594)
.|+..+|||||||||||++|+++|++.+++++.++.++
T Consensus 37 ~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 37 KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence 45788999999999999999999999999999998765
No 324
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.94 E-value=4.4e-05 Score=74.19 Aligned_cols=41 Identities=24% Similarity=0.447 Sum_probs=32.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEecch
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPE 290 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~~~ 290 (594)
|++...-++++||||||||+++..++... .+....+++..+
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 67777889999999999999999988665 234566777654
No 325
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.94 E-value=1.7e-05 Score=81.80 Aligned_cols=38 Identities=29% Similarity=0.318 Sum_probs=32.8
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccc
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAE 569 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e 569 (594)
.++.+++||||||||||+||+++|++.+.++..+.++.
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~ 65 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPA 65 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccch
Confidence 44567999999999999999999999999987776653
No 326
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.91 E-value=7.5e-06 Score=72.07 Aligned_cols=31 Identities=32% Similarity=0.617 Sum_probs=29.3
Q ss_pred EEeecCCCCchHHHHHHHHhhcCCCEEEEec
Q 007661 537 CLLEGPSGSGKTALAATAGIDSDFPFVKIIS 567 (594)
Q Consensus 537 vLL~GPpG~GKT~lAkalA~~~~~~fi~v~~ 567 (594)
|++.||||||||++|+.||...|++++.++-
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 6899999999999999999999999998877
No 327
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.91 E-value=4.1e-05 Score=78.70 Aligned_cols=161 Identities=22% Similarity=0.303 Sum_probs=87.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhhCCCC-cEEEecchhhhcccch---------------hH----HHHHHHHHHH
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQIGKMLNGME-PKIVNGPEVLSKFVGE---------------TE----KNIRDLFADA 310 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l~~~~-~~~v~~~~l~~~~~g~---------------~~----~~i~~lf~~a 310 (594)
-.+|+|+.|||.-|||||+|.-.....+.... -..|.-.+++...... .. .-+.-+-++.
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eI 190 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEI 190 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHH
Confidence 45699999999999999999998886653210 0112333333211000 00 0011111111
Q ss_pred HhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHH-HHHHHHHhhcCccccCcEEEEEeeCC-cccccHHhhCCC
Q 007661 311 ENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDS-IVNQLLTKIDGVESLNNVLLIGMTNR-KDMLDEALLRPG 388 (594)
Q Consensus 311 ~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~-~v~~Ll~~ld~~~~~~~v~vI~~tn~-~~~ld~al~r~g 388 (594)
... -++|+|||+..- .+.+. ++++|.+.+- .++++++||+|| |+.|-..-+.
T Consensus 191 a~e---------a~lLCFDEfQVT-----------DVADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknGlQ-- 244 (467)
T KOG2383|consen 191 AEE---------AILLCFDEFQVT-----------DVADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNGLQ-- 244 (467)
T ss_pred hhh---------ceeeeechhhhh-----------hHHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcchh--
Confidence 111 249999998752 23332 3455544432 248999999999 4545433222
Q ss_pred CccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcC-C--CCHH-HHHHHHHHHH
Q 007661 389 RLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTK-N--YSGA-ELEGVAKSAV 450 (594)
Q Consensus 389 Rf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~-g--~sg~-dl~~l~~~A~ 450 (594)
| +..+| -..+|+.+++-.. +.+.+|+...+.-.. + |.+. |.+.++++--
T Consensus 245 R---~~F~P------fI~~L~~rc~vi~----ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~f 297 (467)
T KOG2383|consen 245 R---ENFIP------FIALLEERCKVIQ----LDSGVDYRRKAKSAGENYYFISETDVETVLKEWF 297 (467)
T ss_pred h---hhhhh------HHHHHHHhheEEe----cCCccchhhccCCCCceeEecChhhHHHHHHHHH
Confidence 1 33333 2467777777665 677788883333221 1 3444 7777777654
No 328
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.89 E-value=5.9e-05 Score=71.38 Aligned_cols=48 Identities=25% Similarity=0.360 Sum_probs=30.5
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
+.|.+++++++ ...+. .. ....++.++|+|++|+|||++++++...+.
T Consensus 2 fvgR~~e~~~l-~~~l~-~~---------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 2 FVGREEEIERL-RDLLD-AA---------QSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp -TT-HHHHHHH-HHTTG-GT---------SS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH-HHHHH-HH---------HcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57889999988 55543 11 224557899999999999999999887773
No 329
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.86 E-value=0.00024 Score=86.29 Aligned_cols=181 Identities=18% Similarity=0.279 Sum_probs=97.3
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCC--cEEEecch
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME--PKIVNGPE 290 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~--~~~v~~~~ 290 (594)
.-.+++ +.|++..++++ ..++. ++....+-+-++||+|+||||+|+++++.+...+ .++++...
T Consensus 180 ~~~~~~--~vG~~~~l~~l-~~lL~-----------l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~ 245 (1153)
T PLN03210 180 SNDFED--FVGIEDHIAKM-SSLLH-----------LESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAF 245 (1153)
T ss_pred Cccccc--ccchHHHHHHH-HHHHc-----------cccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccc
Confidence 344666 89999999988 44432 2234556789999999999999999988774321 11221100
Q ss_pred h---hhccc-------c----hhHHHHHHHHHH----------HHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCc
Q 007661 291 V---LSKFV-------G----ETEKNIRDLFAD----------AENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTG 346 (594)
Q Consensus 291 l---~~~~~-------g----~~~~~i~~lf~~----------a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~ 346 (594)
+ ...+. . -....+.+++.. .++. -...+.+|++||++..
T Consensus 246 v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~-----L~~krvLLVLDdv~~~------------ 308 (1153)
T PLN03210 246 ISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEER-----LKHRKVLIFIDDLDDQ------------ 308 (1153)
T ss_pred cccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHH-----HhCCeEEEEEeCCCCH------------
Confidence 0 00000 0 000111111110 0000 0113559999998742
Q ss_pred hHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCccc
Q 007661 347 VHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVN 426 (594)
Q Consensus 347 ~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~ 426 (594)
..+..+....+... .+-.||.||+..+ +.+....+..++++.|+.++..+++..+.-+.. .+..+
T Consensus 309 ---~~l~~L~~~~~~~~--~GsrIIiTTrd~~-----vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-----~~~~~ 373 (1153)
T PLN03210 309 ---DVLDALAGQTQWFG--SGSRIIVITKDKH-----FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-----SPPDG 373 (1153)
T ss_pred ---HHHHHHHhhCccCC--CCcEEEEEeCcHH-----HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-----CCcHH
Confidence 12333433333221 2345666776543 332234566899999999999999987764321 11122
Q ss_pred H----HHHHHHcCCCCH
Q 007661 427 L----QELAARTKNYSG 439 (594)
Q Consensus 427 l----~~la~~t~g~sg 439 (594)
+ .++++.+.|...
T Consensus 374 ~~~l~~~iv~~c~GLPL 390 (1153)
T PLN03210 374 FMELASEVALRAGNLPL 390 (1153)
T ss_pred HHHHHHHHHHHhCCCcH
Confidence 2 345667777654
No 330
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=0.00012 Score=72.66 Aligned_cols=127 Identities=13% Similarity=0.068 Sum_probs=80.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcE-------------EEecchhhhccc---chhHHHHHHHHHHHHhhcc
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPK-------------IVNGPEVLSKFV---GETEKNIRDLFADAENDQR 315 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~-------------~v~~~~l~~~~~---g~~~~~i~~lf~~a~~~~~ 315 (594)
.+|..+||+||+|+||..+|.++|+.+-+..-- .-+.+|+.--+. .-....+|++-+.......
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 356689999999999999999999887432100 001111111010 1123445555554432111
Q ss_pred ccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceee
Q 007661 316 TRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVE 395 (594)
Q Consensus 316 ~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~ 395 (594)
.. ....|++||++|.+- ....+.||..++. +..+.++|..|+.++.+-|.+++ |.. .+.
T Consensus 85 e~---~~~KV~II~~ae~m~-------------~~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RCq-~~~ 143 (261)
T PRK05818 85 ES---NGKKIYIIYGIEKLN-------------KQSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RCV-QYV 143 (261)
T ss_pred hc---CCCEEEEeccHhhhC-------------HHHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--hee-eee
Confidence 11 123599999999984 3456778888874 56689999999999999999998 532 456
Q ss_pred cCCC
Q 007661 396 ISLP 399 (594)
Q Consensus 396 i~~P 399 (594)
++.+
T Consensus 144 ~~~~ 147 (261)
T PRK05818 144 VLSK 147 (261)
T ss_pred cCCh
Confidence 6655
No 331
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.85 E-value=2e-05 Score=84.97 Aligned_cols=50 Identities=32% Similarity=0.407 Sum_probs=40.3
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccccccccchhhhHHHHHHHhhh
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVSECQF 591 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~vG~sE~~~~~~ir~~F~~A~ 591 (594)
..++||+||||||||++|+++|...+.+|+.++.... +.. .++++++.++
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~----~~~----~ir~ii~~~~ 85 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS----GVK----DLREVIEEAR 85 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc----cHH----HHHHHHHHHH
Confidence 3479999999999999999999999999999886532 122 2788887774
No 332
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=5.9e-05 Score=82.90 Aligned_cols=56 Identities=25% Similarity=0.284 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEec
Q 007661 512 HKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIIS 567 (594)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~ 567 (594)
+.+++++...+.-..+........=+||+||||+|||+|++.+|...|-.|+++..
T Consensus 328 LekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sL 383 (782)
T COG0466 328 LEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISL 383 (782)
T ss_pred chhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEec
Confidence 44555555554433333222222237999999999999999999999999999854
No 333
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.85 E-value=0.00012 Score=66.83 Aligned_cols=30 Identities=20% Similarity=0.520 Sum_probs=25.9
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 249 LGIKHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 249 ~g~~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
+.+.+...+++.||+|||||++.|++|...
T Consensus 24 l~v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 24 LSVRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eeecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 345667779999999999999999999876
No 334
>PHA02244 ATPase-like protein
Probab=97.83 E-value=5.7e-05 Score=78.33 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=30.6
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcCCCEEEEec
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSDFPFVKIIS 567 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~ 567 (594)
..+||+||||||||++|+++|...+.+|+.+..
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~ 152 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNA 152 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 359999999999999999999999999999974
No 335
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.81 E-value=5.1e-05 Score=73.85 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=20.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGK 276 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~ 276 (594)
|..+|+||+||+|||++|+.++.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 45699999999999999999863
No 336
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.80 E-value=0.00094 Score=69.45 Aligned_cols=82 Identities=18% Similarity=0.254 Sum_probs=51.1
Q ss_pred CCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCC-------------
Q 007661 321 SDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRP------------- 387 (594)
Q Consensus 321 ~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~------------- 387 (594)
..+-||+|||+|++-+. .... ++..+..+-...++++|.+.++- .+..++...
T Consensus 171 ~~~iViiIDdLDR~~~~---------~i~~----~l~~ik~~~~~~~i~~Il~~D~~-~l~~ai~~~~~~~~~~~~~~~y 236 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCSPE---------EIVE----LLEAIKLLLDFPNIIFILAFDPE-ILEKAIEKNYGEGFDEIDGREY 236 (325)
T ss_pred CceEEEEEcchhcCCcH---------HHHH----HHHHHHHhcCCCCeEEEEEecHH-HHHHHHHhhcCcccccccHHHH
Confidence 34679999999998532 2233 33333333344788888877652 222222210
Q ss_pred --CCccceeecCCCCHHHHHHHHHHHHhccc
Q 007661 388 --GRLEVQVEISLPDENGRLQILQIHTNKMK 416 (594)
Q Consensus 388 --gRf~~~i~i~~P~~~~r~~IL~~~~~~~~ 416 (594)
--|+..+.+|.|+..+...++...+....
T Consensus 237 LeKiiq~~~~lP~~~~~~~~~~~~~~~~~~~ 267 (325)
T PF07693_consen 237 LEKIIQVPFSLPPPSPSDLERYLNELLESLE 267 (325)
T ss_pred HHhhcCeEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 04677899999999988888887755543
No 337
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.79 E-value=2e-05 Score=73.92 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=31.0
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhcCCCEEEEe
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVKII 566 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~ 566 (594)
++..|+|+||||||||++|++||...+++|+..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 5568999999999999999999999999999764
No 338
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.77 E-value=0.00019 Score=82.94 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccc
Q 007661 513 KHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAE 569 (594)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e 569 (594)
.++++....+..........+...++|+||||||||++|+.+|...+.+|+++....
T Consensus 328 ~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~ 384 (784)
T PRK10787 328 ERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGG 384 (784)
T ss_pred HHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 344444443333322222223345999999999999999999999999999886443
No 339
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.76 E-value=0.00017 Score=74.22 Aligned_cols=118 Identities=19% Similarity=0.277 Sum_probs=68.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEecchhhhc----------------ccchhHHHHHHHHHHHH
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPEVLSK----------------FVGETEKNIRDLFADAE 311 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~~~l~~~----------------~~g~~~~~i~~lf~~a~ 311 (594)
|+++..-++++||||||||+||-.++... .+..+.+++..+..+. .....+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56777789999999999999988877554 2345556655432220 01111222222222222
Q ss_pred hhccccCCCCCcEEEEEccchhhhccCCCCCC----CCchHHHHHHHHHHhhcCccccCcEEEEEeeC
Q 007661 312 NDQRTRGDQSDLHVIIFDEIDAICKSRGSTRD----GTGVHDSIVNQLLTKIDGVESLNNVLLIGMTN 375 (594)
Q Consensus 312 ~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~----~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn 375 (594)
.. .+.+|+||-+.++.++.+-... ..+...+.+.+++..+...-...++.+|.+..
T Consensus 131 ~~--------~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 131 SG--------AVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred cc--------CCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 22 3569999999999865321110 01123355566666666665667777777643
No 340
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.73 E-value=0.00014 Score=71.50 Aligned_cols=40 Identities=30% Similarity=0.505 Sum_probs=31.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEecc
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGP 289 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~~ 289 (594)
|++...-++++||||+|||+++.+++... .+..+++++..
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 66777779999999999999999998755 33456667665
No 341
>PRK12377 putative replication protein; Provisional
Probab=97.72 E-value=6.4e-05 Score=74.77 Aligned_cols=56 Identities=18% Similarity=0.301 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhc---CCCEEEEeccccc
Q 007661 512 HKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESM 571 (594)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~---~~~fi~v~~~e~~ 571 (594)
...++..+..+.+.+.. ...+++|+||||||||.||.++|++. |.+++.+..++++
T Consensus 83 ~~~a~~~a~~~a~~~~~----~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~ 141 (248)
T PRK12377 83 QRYALSQAKSIADELMT----GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVM 141 (248)
T ss_pred HHHHHHHHHHHHHHHHh----cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHH
Confidence 33455555666555543 23689999999999999999999765 6778888888775
No 342
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.72 E-value=3.4e-05 Score=69.30 Aligned_cols=39 Identities=33% Similarity=0.557 Sum_probs=35.1
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhc---CCCEEEEeccccc
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESM 571 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~---~~~fi~v~~~e~~ 571 (594)
+..+++++||||||||++++.++... +.+++.+..++..
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~ 59 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLL 59 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhh
Confidence 45679999999999999999999998 9999999888765
No 343
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=4.3e-05 Score=83.14 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=25.6
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcCC
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSDF 560 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~~ 560 (594)
+.+.++|||||||||||++|+++|...++
T Consensus 34 ~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 34 SISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45667999999999999999999998765
No 344
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.71 E-value=0.00037 Score=71.30 Aligned_cols=135 Identities=15% Similarity=0.160 Sum_probs=85.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEe---cchhhhccc--ch--hHHHHHHHHHHHHhhccccCCCCCcEEEE
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVN---GPEVLSKFV--GE--TEKNIRDLFADAENDQRTRGDQSDLHVII 327 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~---~~~l~~~~~--g~--~~~~i~~lf~~a~~~~~~~~~~~~~~Il~ 327 (594)
...||+|+.|.||+++++.+++.+.+...-.++ .++-..-+- |. .-..++++.+....... ..+...|++
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~~---~~~~~KvvI 95 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFSSF---VQSQKKILI 95 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccCCc---ccCCceEEE
Confidence 368899999999999999999987331100000 000000000 11 12345555444432210 012345999
Q ss_pred EccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHH
Q 007661 328 FDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQI 407 (594)
Q Consensus 328 iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~I 407 (594)
||++|.+. ....+.||..++. +..++++|..|+.++.+-+.++++++ .+++.+|+.++..+.
T Consensus 96 I~~~e~m~-------------~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~SRc~---~~~f~~l~~~~l~~~ 157 (299)
T PRK07132 96 IKNIEKTS-------------NSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVSRCQ---VFNVKEPDQQKILAK 157 (299)
T ss_pred EecccccC-------------HHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHhCeE---EEECCCCCHHHHHHH
Confidence 99998763 3355678888875 44577777778788889999988555 799999999888777
Q ss_pred HHH
Q 007661 408 LQI 410 (594)
Q Consensus 408 L~~ 410 (594)
|..
T Consensus 158 l~~ 160 (299)
T PRK07132 158 LLS 160 (299)
T ss_pred HHH
Confidence 653
No 345
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.70 E-value=4.6e-05 Score=82.52 Aligned_cols=40 Identities=25% Similarity=0.045 Sum_probs=29.2
Q ss_pred CCCcceEEEeecCCCCchHHHHHHHHhhc--CCCEEEEeccc
Q 007661 530 KGSPLVTCLLEGPSGSGKTALAATAGIDS--DFPFVKIISAE 569 (594)
Q Consensus 530 ~~~p~~gvLL~GPpG~GKT~lAkalA~~~--~~~fi~v~~~e 569 (594)
...+.-.+=|+|++|||||+||++|+.-. .---|.+.|.+
T Consensus 313 ~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~ 354 (539)
T COG1123 313 DLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD 354 (539)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc
Confidence 34555567899999999999999999533 34445566655
No 346
>PRK08118 topology modulation protein; Reviewed
Probab=97.69 E-value=2.9e-05 Score=72.70 Aligned_cols=31 Identities=32% Similarity=0.502 Sum_probs=29.5
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEEe
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKII 566 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~ 566 (594)
.|++.||||||||+||+.||...+++++.++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD 33 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLD 33 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecc
Confidence 5899999999999999999999999999887
No 347
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.69 E-value=0.00012 Score=71.36 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=23.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
+....-+-|.||+||||||+.|.+|...
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444558999999999999999999765
No 348
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.67 E-value=0.00013 Score=76.91 Aligned_cols=80 Identities=28% Similarity=0.424 Sum_probs=52.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhhCC--CCcEEEecchhhhcc------cc--------hhHHHHHHHHHHHHhh
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKMLNG--MEPKIVNGPEVLSKF------VG--------ETEKNIRDLFADAEND 313 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l~~--~~~~~v~~~~l~~~~------~g--------~~~~~i~~lf~~a~~~ 313 (594)
|+.+..-++|+|+||+|||+++.+++..+.. ..+.++++.+-.... +| ..+..+..+++.+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 5677778999999999999999999977632 356666664322210 11 0122345555555444
Q ss_pred ccccCCCCCcEEEEEccchhhhcc
Q 007661 314 QRTRGDQSDLHVIIFDEIDAICKS 337 (594)
Q Consensus 314 ~~~~~~~~~~~Il~iDEid~l~~~ 337 (594)
. |.+|+||++..+...
T Consensus 158 ~--------~~lVVIDSIq~l~~~ 173 (372)
T cd01121 158 K--------PDLVIIDSIQTVYSS 173 (372)
T ss_pred C--------CcEEEEcchHHhhcc
Confidence 3 569999999998643
No 349
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.67 E-value=0.00034 Score=69.09 Aligned_cols=39 Identities=26% Similarity=0.415 Sum_probs=27.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEec
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNG 288 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~ 288 (594)
|+++..-+++.||||||||+++..++..+ ++....++..
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 45667789999999999999986655443 3444555543
No 350
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.00073 Score=68.60 Aligned_cols=132 Identities=17% Similarity=0.175 Sum_probs=85.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEE---------------Eecchhhhcc-cc--hhHHHHHHHHHHHHhhc
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI---------------VNGPEVLSKF-VG--ETEKNIRDLFADAENDQ 314 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~---------------v~~~~l~~~~-~g--~~~~~i~~lf~~a~~~~ 314 (594)
.+..+||+|| +||+++|+.+|+.+.+..... -+-+|+..-. .| -.-..+|++.+.+...
T Consensus 23 l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~- 99 (290)
T PRK07276 23 LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS- 99 (290)
T ss_pred cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC-
Confidence 4457899996 689999999998875432100 0112221110 11 1245677777666543
Q ss_pred cccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCcccee
Q 007661 315 RTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQV 394 (594)
Q Consensus 315 ~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i 394 (594)
|..+ ...|++||++|.+- ....|.||..++. +..+.++|..|+.++.|-|.++++++ .+
T Consensus 100 p~~~---~~kV~II~~ad~m~-------------~~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~SRcq---~i 158 (290)
T PRK07276 100 GYEG---KQQVFIIKDADKMH-------------VNAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKSRTQ---IF 158 (290)
T ss_pred cccC---CcEEEEeehhhhcC-------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHHcce---ee
Confidence 3322 24599999999984 3355778888874 44578899999999999999998444 67
Q ss_pred ecCCCCHHHHHHHHH
Q 007661 395 EISLPDENGRLQILQ 409 (594)
Q Consensus 395 ~i~~P~~~~r~~IL~ 409 (594)
.|+. +.+...++|.
T Consensus 159 ~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 159 HFPK-NEAYLIQLLE 172 (290)
T ss_pred eCCC-cHHHHHHHHH
Confidence 8865 5555555554
No 351
>PRK08116 hypothetical protein; Validated
Probab=97.66 E-value=7.6e-05 Score=75.43 Aligned_cols=58 Identities=28% Similarity=0.318 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhh---cCCCEEEEeccccc
Q 007661 513 KHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGID---SDFPFVKIISAESM 571 (594)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~---~~~~fi~v~~~e~~ 571 (594)
..++..+..+.+.+.... ....|++|+||||||||.||.++|++ .+.+++.+..++++
T Consensus 94 ~~a~~~a~~y~~~~~~~~-~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll 154 (268)
T PRK08116 94 EKAYKIARKYVKKFEEMK-KENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLL 154 (268)
T ss_pred HHHHHHHHHHHHHHHhhc-cCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 345555666666554322 23457999999999999999999987 48899988888865
No 352
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.65 E-value=0.00021 Score=69.86 Aligned_cols=40 Identities=33% Similarity=0.534 Sum_probs=31.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEecc
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGP 289 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~~ 289 (594)
|+....-++++|+||||||+++..+|... .+..+.+++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 66777779999999999999999999775 23455566543
No 353
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.64 E-value=0.00027 Score=70.47 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=25.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhCC
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNG 280 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~~ 280 (594)
.....+++.||+|||||++++.+++.+..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 44557999999999999999999998754
No 354
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.62 E-value=0.003 Score=67.78 Aligned_cols=184 Identities=12% Similarity=0.134 Sum_probs=88.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhhCCCCcEE-Eecc------------hhhhcccchhHHHHHHHHHHHHhhcc--ccC-
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKI-VNGP------------EVLSKFVGETEKNIRDLFADAENDQR--TRG- 318 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l~~~~~~~-v~~~------------~l~~~~~g~~~~~i~~lf~~a~~~~~--~~~- 318 (594)
+-+||+||+||||||.++.+++++. ..+.. .|+- .....++...-.........+..+.. ..+
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg-~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~ 189 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELG-YQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGD 189 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhC-ceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhccc
Confidence 3478999999999999999999983 22221 1111 11111111111112222222312111 111
Q ss_pred -CCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEee-CCcccccHH------hhCCCCc
Q 007661 319 -DQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMT-NRKDMLDEA------LLRPGRL 390 (594)
Q Consensus 319 -~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~t-n~~~~ld~a------l~r~gRf 390 (594)
....+.+|++||+-..+... .....+.++. ++... ....+++|.|- ..++.-++. +.-..|+
T Consensus 190 ~~~~~~~liLveDLPn~~~~d-----~~~~f~evL~-~y~s~----g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri 259 (634)
T KOG1970|consen 190 DLRTDKKLILVEDLPNQFYRD-----DSETFREVLR-LYVSI----GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI 259 (634)
T ss_pred ccccCceEEEeeccchhhhhh-----hHHHHHHHHH-HHHhc----CCCcEEEEEeccccCCCcchhhhchhhhhhccCc
Confidence 12235699999997766321 1122333443 22221 11233333332 222222221 1112244
Q ss_pred cceeecCCCCHHHHHHHHHHHHhccccCCC---CCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 007661 391 EVQVEISLPDENGRLQILQIHTNKMKENSF---LAPDVNLQELAARTKNYSGAELEGVAKSAVSFAL 454 (594)
Q Consensus 391 ~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~---l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~ 454 (594)
. .|.|.+-...-....|+..+..+..... ......++.++... +.||+..+....+.+.
T Consensus 260 ~-~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s----~GDIRsAInsLQlsss 321 (634)
T KOG1970|consen 260 S-NISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQGS----GGDIRSAINSLQLSSS 321 (634)
T ss_pred c-eEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHhc----CccHHHHHhHhhhhcc
Confidence 4 5788888887777777777665432210 11233455555544 4588877776666543
No 355
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.62 E-value=0.00025 Score=76.93 Aligned_cols=80 Identities=26% Similarity=0.456 Sum_probs=53.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhhcc------cch--------hHHHHHHHHHHHHhh
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKF------VGE--------TEKNIRDLFADAEND 313 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~~~------~g~--------~~~~i~~lf~~a~~~ 313 (594)
|+.+..-++|+|+||+|||+++.+++.... +..++++++.+-.... .|. .+..+.++++..++.
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 677777899999999999999999998763 4456677665433211 110 112344555555444
Q ss_pred ccccCCCCCcEEEEEccchhhhcc
Q 007661 314 QRTRGDQSDLHVIIFDEIDAICKS 337 (594)
Q Consensus 314 ~~~~~~~~~~~Il~iDEid~l~~~ 337 (594)
. |.+|+||++..+...
T Consensus 156 ~--------~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 156 K--------PDLVVIDSIQTMYSP 171 (446)
T ss_pred C--------CCEEEEechhhhccc
Confidence 3 459999999998753
No 356
>PF14516 AAA_35: AAA-like domain
Probab=97.61 E-value=0.0019 Score=67.48 Aligned_cols=168 Identities=14% Similarity=0.133 Sum_probs=97.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhhcccch-------------------------------
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGE------------------------------- 298 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~~~~g~------------------------------- 298 (594)
+++.-+.++||..+|||++...+.+.+. +...+.+++..+-......
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~ 108 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIG 108 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcC
Confidence 3456789999999999999999987774 3444556555432210000
Q ss_pred hHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc---ccCcEEEEEeeC
Q 007661 299 TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE---SLNNVLLIGMTN 375 (594)
Q Consensus 299 ~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~---~~~~v~vI~~tn 375 (594)
........|++.--. ....|-||+|||+|.+.... ...+..+..|....+.-. ...++.+|++..
T Consensus 109 ~~~~~~~~~~~~ll~-----~~~~~lVL~iDEiD~l~~~~-------~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~ 176 (331)
T PF14516_consen 109 SKISCTEYFEEYLLK-----QIDKPLVLFIDEIDRLFEYP-------QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGS 176 (331)
T ss_pred ChhhHHHHHHHHHHh-----cCCCCEEEEEechhhhccCc-------chHHHHHHHHHHHHHhcccCcccceEEEEEecC
Confidence 111223333322110 11347799999999997421 234455554444433211 112343443333
Q ss_pred Cccccc-HHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCC
Q 007661 376 RKDMLD-EALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYS 438 (594)
Q Consensus 376 ~~~~ld-~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~s 438 (594)
....+. ..-.+|+.+...|+++..+.++...+++.+-... ....++.|-..|.|..
T Consensus 177 t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~-------~~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 177 TEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF-------SQEQLEQLMDWTGGHP 233 (331)
T ss_pred cccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC-------CHHHHHHHHHHHCCCH
Confidence 222222 2224677777889999999999999888764332 2334888889898865
No 357
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.61 E-value=0.00047 Score=65.49 Aligned_cols=32 Identities=41% Similarity=0.331 Sum_probs=24.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEec
Q 007661 257 MLLYGPPGTGKTLMARQIGKML--NGMEPKIVNG 288 (594)
Q Consensus 257 iLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~ 288 (594)
+|++||||||||+++..++... ++..+.+++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 6899999999999999887654 3445555554
No 358
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.60 E-value=4.5e-05 Score=70.05 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=28.7
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEEe
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKII 566 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~ 566 (594)
+|+|+||||||||++|+.||...+++|+..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3799999999999999999999999999765
No 359
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.60 E-value=0.00043 Score=71.31 Aligned_cols=118 Identities=18% Similarity=0.261 Sum_probs=66.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEecchhhhc----------------ccchhHHHHHHHHHHHH
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPEVLSK----------------FVGETEKNIRDLFADAE 311 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~~~l~~~----------------~~g~~~~~i~~lf~~a~ 311 (594)
|++..+-+.++||||||||++|-.++... .+..+.+++..+-.+. .....+..+..+-..++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 56667779999999999999999887654 2345566665432220 00111222221111122
Q ss_pred hhccccCCCCCcEEEEEccchhhhccCCCCCC--CC--chHHHHHHHHHHhhcCccccCcEEEEEeeC
Q 007661 312 NDQRTRGDQSDLHVIIFDEIDAICKSRGSTRD--GT--GVHDSIVNQLLTKIDGVESLNNVLLIGMTN 375 (594)
Q Consensus 312 ~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~--~~--~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn 375 (594)
. ..+.+|+||-+-++.++.+-... +. ....+.+.+.+..+...-...++.+|.+..
T Consensus 131 s--------~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 131 S--------GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred c--------cCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 2 23569999999999864321110 01 122345566666666555556777776543
No 360
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.60 E-value=5.3e-05 Score=79.15 Aligned_cols=43 Identities=37% Similarity=0.563 Sum_probs=37.2
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc-----cccccc
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM-----IGLHES 577 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~-----vG~sE~ 577 (594)
..+||.||||||||+||+++|...+.+|+.|.+...+ +|...-
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~ 91 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAY 91 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhH
Confidence 4599999999999999999999999999999877654 675443
No 361
>PRK00625 shikimate kinase; Provisional
Probab=97.58 E-value=5.4e-05 Score=71.22 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=29.4
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEEe
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKII 566 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~ 566 (594)
.|+|.|+||||||++++.||...+++|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999999886
No 362
>PRK03839 putative kinase; Provisional
Probab=97.58 E-value=4.9e-05 Score=72.07 Aligned_cols=31 Identities=19% Similarity=0.404 Sum_probs=28.8
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEEe
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKII 566 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~ 566 (594)
.|+|.|+||||||++|+.||...+++|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999999864
No 363
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=7.1e-05 Score=79.55 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=25.1
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcCC
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSDF 560 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~~ 560 (594)
+.+.++||+||||||||++|+++|....+
T Consensus 34 ~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 34 GMTHAWLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 35678999999999999999999986554
No 364
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=8.1e-05 Score=77.16 Aligned_cols=53 Identities=34% Similarity=0.386 Sum_probs=45.2
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc----ccccccchhhhHHHHHHHhh
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES----MIGLHESTKCAQIVKVSECQ 590 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~----~vG~sE~~~~~~ir~~F~~A 590 (594)
.+|||.||+|+|||+||+.||.-.+.||.--+...+ ||||--.- -|.++...|
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEs---vi~KLl~~A 283 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVES---VIQKLLQEA 283 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHH---HHHHHHHHc
Confidence 569999999999999999999999999999999988 79975322 277777665
No 365
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.57 E-value=8.3e-05 Score=77.13 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhc---CCCEEEEeccccc
Q 007661 512 HKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESM 571 (594)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~---~~~fi~v~~~e~~ 571 (594)
...++..+..+++.|.. ...+++||||||||||.||.++|++. |..++.+..++++
T Consensus 165 ~~~~~~~~~~f~~~f~~----~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~ 223 (329)
T PRK06835 165 MEKILEKCKNFIENFDK----NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELI 223 (329)
T ss_pred HHHHHHHHHHHHHHHhc----cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHH
Confidence 44566666666666643 22679999999999999999999874 7888888888875
No 366
>PRK06921 hypothetical protein; Provisional
Probab=97.56 E-value=0.00013 Score=73.68 Aligned_cols=59 Identities=27% Similarity=0.303 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhc----CCCEEEEeccccc
Q 007661 513 KHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS----DFPFVKIISAESM 571 (594)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~----~~~fi~v~~~e~~ 571 (594)
..+...+..+++.+.........+++|+||||||||.||.++|++. |.+.+.+..++++
T Consensus 96 ~~~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~ 158 (266)
T PRK06921 96 KDAYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGF 158 (266)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHH
Confidence 3445555555665544333345789999999999999999999864 6677777665543
No 367
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.56 E-value=0.0002 Score=68.71 Aligned_cols=67 Identities=16% Similarity=0.140 Sum_probs=38.5
Q ss_pred cEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCC
Q 007661 323 LHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLP 399 (594)
Q Consensus 323 ~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P 399 (594)
.++|+|||++..++++..... .....+ +++... ...++-+|.+|..+..||+.+++ ..+..+.+.-+
T Consensus 80 ~~liviDEa~~~~~~r~~~~~---~~~~~~-~~l~~h----Rh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 80 GSLIVIDEAQNFFPSRSWKGK---KVPEII-EFLAQH----RHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp T-EEEETTGGGTSB---T-T-------HHH-HGGGGC----CCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred CcEEEEECChhhcCCCccccc---cchHHH-HHHHHh----CcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 459999999999988765211 112333 333332 23467899999999999999987 76666665443
No 368
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.54 E-value=0.00012 Score=75.30 Aligned_cols=39 Identities=21% Similarity=0.142 Sum_probs=34.5
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhc---CCCEEEEeccccc
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESM 571 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~---~~~fi~v~~~e~~ 571 (594)
...|++|+||||||||.||.|+|+++ |.+..-+..|+++
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~ 196 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFI 196 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHH
Confidence 45789999999999999999999876 7888888888875
No 369
>PRK14532 adenylate kinase; Provisional
Probab=97.54 E-value=6.5e-05 Score=71.72 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=28.8
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
.++|.||||||||++|+.||...|+.+|+.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 489999999999999999999999999998
No 370
>PRK06620 hypothetical protein; Validated
Probab=97.54 E-value=0.00012 Score=71.47 Aligned_cols=30 Identities=40% Similarity=0.409 Sum_probs=26.7
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcCCCEEE
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSDFPFVK 564 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~~~fi~ 564 (594)
..++||||||||||+|++++|...+..|+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 679999999999999999999998876654
No 371
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.54 E-value=0.0002 Score=78.18 Aligned_cols=159 Identities=19% Similarity=0.291 Sum_probs=83.8
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecc--hhhh--cc
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLG-IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGP--EVLS--KF 295 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g-~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~--~l~~--~~ 295 (594)
|-|+++.++.++-.+|--.-.. +.+.| .+.--+|||+|.||||||-+.+.+++.+... .+.+|- .-.+ .|
T Consensus 431 Iye~edvKkglLLqLfGGt~k~---~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg--~yTSGkGsSavGLTay 505 (804)
T KOG0478|consen 431 IYELEDVKKGLLLQLFGGTRKE---DEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRG--VYTSGKGSSAVGLTAY 505 (804)
T ss_pred hhcccchhhhHHHHHhcCCccc---ccccccccccceEEEecCCCcCHHHHHHHHHHhCCcc--eeecCCccchhcceee
Confidence 7777777777755444222111 12212 2334579999999999999999999987422 223321 1111 11
Q ss_pred cchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhc------Ccc--ccCc
Q 007661 296 VGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKID------GVE--SLNN 367 (594)
Q Consensus 296 ~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld------~~~--~~~~ 367 (594)
+-.. ...+++.-+.... ... ..-|.+|||+|.+- ...+.++.+.+++-. |+- -+.+
T Consensus 506 Vtrd-~dtkqlVLesGAL--VLS---D~GiCCIDEFDKM~----------dStrSvLhEvMEQQTvSIAKAGII~sLNAR 569 (804)
T KOG0478|consen 506 VTKD-PDTRQLVLESGAL--VLS---DNGICCIDEFDKMS----------DSTRSVLHEVMEQQTLSIAKAGIIASLNAR 569 (804)
T ss_pred EEec-CccceeeeecCcE--EEc---CCceEEchhhhhhh----------HHHHHHHHHHHHHhhhhHhhcceeeecccc
Confidence 1000 0011111111110 011 11288999999984 223445444433311 211 1235
Q ss_pred EEEEEeeCCccc-------------ccHHhhCCCCcccee-ecCCCCHH
Q 007661 368 VLLIGMTNRKDM-------------LDEALLRPGRLEVQV-EISLPDEN 402 (594)
Q Consensus 368 v~vI~~tn~~~~-------------ld~al~r~gRf~~~i-~i~~P~~~ 402 (594)
.-|+|++|+... |+|.|++ ||+..+ -++.||+.
T Consensus 570 ~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 570 CSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDER 616 (804)
T ss_pred ceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchh
Confidence 789999996422 6899999 998654 34555665
No 372
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.53 E-value=0.0011 Score=68.06 Aligned_cols=140 Identities=21% Similarity=0.278 Sum_probs=79.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh----------c-----ccchh----HHHH---HHHHHH
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS----------K-----FVGET----EKNI---RDLFAD 309 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~----------~-----~~g~~----~~~i---~~lf~~ 309 (594)
.-|..+.|||-+|||||.++|++.+.++ .+.+++++-++.. + +.|.. ..++ -.+|.+
T Consensus 28 ~~PS~~~iyG~sgTGKT~~~r~~l~~~n-~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q 106 (438)
T KOG2543|consen 28 TIPSIVHIYGHSGTGKTYLVRQLLRKLN-LENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQ 106 (438)
T ss_pred ccceeEEEeccCCCchhHHHHHHHhhcC-CcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHh
Confidence 3466789999999999999999999984 4556677765544 1 11111 1122 223333
Q ss_pred HHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCC
Q 007661 310 AENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGR 389 (594)
Q Consensus 310 a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gR 389 (594)
....... ..-..|++|.+|.+-. ....++..|+. +..+-..+.+.+|.....++ +.-+.+-|-
T Consensus 107 ~~~~t~~----d~~~~liLDnad~lrD----------~~a~ll~~l~~-L~el~~~~~i~iils~~~~e--~~y~~n~g~ 169 (438)
T KOG2543|consen 107 WPAATNR----DQKVFLILDNADALRD----------MDAILLQCLFR-LYELLNEPTIVIILSAPSCE--KQYLINTGT 169 (438)
T ss_pred hHHhhcc----CceEEEEEcCHHhhhc----------cchHHHHHHHH-HHHHhCCCceEEEEeccccH--HHhhcccCC
Confidence 1111111 1234899999999851 12223343333 33333334555555444332 122222333
Q ss_pred c-cceeecCCCCHHHHHHHHH
Q 007661 390 L-EVQVEISLPDENGRLQILQ 409 (594)
Q Consensus 390 f-~~~i~i~~P~~~~r~~IL~ 409 (594)
+ ...++||.|+.++..+|+.
T Consensus 170 ~~i~~l~fP~Ys~~e~~~Il~ 190 (438)
T KOG2543|consen 170 LEIVVLHFPQYSVEETQVILS 190 (438)
T ss_pred CCceEEecCCCCHHHHHHHHh
Confidence 3 3478999999999999986
No 373
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00015 Score=79.58 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEe
Q 007661 512 HKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKII 566 (594)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~ 566 (594)
+.+++++.++++-..+..+.....=++|+||||+|||.+||.||...|-.|+++.
T Consensus 416 m~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfS 470 (906)
T KOG2004|consen 416 MEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFS 470 (906)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEe
Confidence 4566777766665554444444555899999999999999999999999999974
No 374
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.52 E-value=0.00013 Score=80.01 Aligned_cols=57 Identities=26% Similarity=0.316 Sum_probs=42.1
Q ss_pred cchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc
Q 007661 509 GDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES 570 (594)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~ 570 (594)
+..++++..|+.... .+..+..=+||+||||||||+++++||.+.|+..+.-..|-.
T Consensus 25 kkKv~eV~~wl~~~~-----~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~ 81 (519)
T PF03215_consen 25 KKKVEEVRSWLEEMF-----SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVS 81 (519)
T ss_pred HHHHHHHHHHHHHHh-----ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCC
Confidence 445666676665422 233334457889999999999999999999999988766655
No 375
>PRK08181 transposase; Validated
Probab=97.52 E-value=9.4e-05 Score=74.50 Aligned_cols=38 Identities=29% Similarity=0.485 Sum_probs=32.4
Q ss_pred ceEEEeecCCCCchHHHHHHHHh---hcCCCEEEEeccccc
Q 007661 534 LVTCLLEGPSGSGKTALAATAGI---DSDFPFVKIISAESM 571 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~---~~~~~fi~v~~~e~~ 571 (594)
..+++|+||||||||.||.++|. +.|..++.+..++++
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~ 146 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLV 146 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHH
Confidence 45799999999999999999995 457888888888775
No 376
>PRK13947 shikimate kinase; Provisional
Probab=97.51 E-value=7.8e-05 Score=69.93 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=28.9
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEEe
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKII 566 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~ 566 (594)
.|+|.|+||||||++|+.||...|++|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999999998755
No 377
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.51 E-value=0.001 Score=71.05 Aligned_cols=133 Identities=20% Similarity=0.257 Sum_probs=77.0
Q ss_pred hhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCC
Q 007661 243 PHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSD 322 (594)
Q Consensus 243 ~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~ 322 (594)
|.+.+.+...++ -++++||.+|||||+++.+.+.+... .++++..+.......- ......+..+... .
T Consensus 27 ~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~--------~ 94 (398)
T COG1373 27 PRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-IIYINFDDLRLDRIEL--LDLLRAYIELKER--------E 94 (398)
T ss_pred HHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-eEEEEecchhcchhhH--HHHHHHHHHhhcc--------C
Confidence 444455555555 79999999999999999999887444 5556555554332111 1112222222221 1
Q ss_pred cEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCccc--ccHHhhCCCCccceeecCCCC
Q 007661 323 LHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDM--LDEALLRPGRLEVQVEISLPD 400 (594)
Q Consensus 323 ~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~--ld~al~r~gRf~~~i~i~~P~ 400 (594)
...||+||++.+- ...+.+..|... ... ++++.|++...-. +.+.| +|| ...+++.+.+
T Consensus 95 ~~yifLDEIq~v~-----------~W~~~lk~l~d~---~~~--~v~itgsss~ll~~~~~~~L--~GR-~~~~~l~PlS 155 (398)
T COG1373 95 KSYIFLDEIQNVP-----------DWERALKYLYDR---GNL--DVLITGSSSSLLSKEISESL--AGR-GKDLELYPLS 155 (398)
T ss_pred CceEEEecccCch-----------hHHHHHHHHHcc---ccc--eEEEECCchhhhccchhhhc--CCC-ceeEEECCCC
Confidence 2499999999863 233444444433 111 4555555544322 23334 678 4578888889
Q ss_pred HHHHHH
Q 007661 401 ENGRLQ 406 (594)
Q Consensus 401 ~~~r~~ 406 (594)
..|...
T Consensus 156 F~Efl~ 161 (398)
T COG1373 156 FREFLK 161 (398)
T ss_pred HHHHHh
Confidence 888865
No 378
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.51 E-value=6.2e-05 Score=74.98 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=23.8
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCC
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDF 560 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~ 560 (594)
.-..|||||||||||+.|.++|.+...
T Consensus 57 lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 57 LPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred CceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 345899999999999999999988765
No 379
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.50 E-value=0.00066 Score=71.58 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=23.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHh
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKM 277 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~ 277 (594)
....++++.||+|||||+++.+++..
T Consensus 207 e~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHHHHhHH
Confidence 45679999999999999999998877
No 380
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.50 E-value=0.00041 Score=68.18 Aligned_cols=121 Identities=15% Similarity=0.175 Sum_probs=66.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh--CC------CCcEEEecchhhhc-cc----------------------ch
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML--NG------MEPKIVNGPEVLSK-FV----------------------GE 298 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l--~~------~~~~~v~~~~l~~~-~~----------------------g~ 298 (594)
|+++..-+.|+||||+|||+++..++... .+ ..+++++..+-... .+ ..
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 67777789999999999999999998664 22 34555655432110 00 00
Q ss_pred hHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEee
Q 007661 299 TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMT 374 (594)
Q Consensus 299 ~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~t 374 (594)
....+...++..... .....+.+|+||-+..+...............+.+.+++..|..+....++.||.+.
T Consensus 95 ~~~~~~~~l~~~~~~----~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tn 166 (226)
T cd01393 95 NGEQQLEIVEELERI----MSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTN 166 (226)
T ss_pred CHHHHHHHHHHHHHH----hhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEE
Confidence 111222233332221 011246699999999987542111110112234455666666555455677776654
No 381
>PLN03025 replication factor C subunit; Provisional
Probab=97.50 E-value=0.00015 Score=75.50 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=27.6
Q ss_pred EEEeecCCCCchHHHHHHHHhhcC-----CCEEEEecccc
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSD-----FPFVKIISAES 570 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~-----~~fi~v~~~e~ 570 (594)
++|||||||||||++|+++|++.. .+++.++.++.
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~ 75 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD 75 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc
Confidence 599999999999999999998862 34555655543
No 382
>PRK14532 adenylate kinase; Provisional
Probab=97.50 E-value=0.0005 Score=65.57 Aligned_cols=37 Identities=22% Similarity=0.427 Sum_probs=30.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcc
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKF 295 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~ 295 (594)
+|+|.||||+||||+++.+|+.++ +..++..+++.+.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g---~~~is~~d~lr~~ 38 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG---MVQLSTGDMLRAA 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC---CeEEeCcHHHHHH
Confidence 589999999999999999999874 5567777776654
No 383
>PRK13949 shikimate kinase; Provisional
Probab=97.50 E-value=8.1e-05 Score=69.87 Aligned_cols=31 Identities=26% Similarity=0.429 Sum_probs=29.6
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEEe
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKII 566 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~ 566 (594)
.|+|+||||||||++++.||...+++|+..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999999999976
No 384
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.50 E-value=0.00015 Score=71.24 Aligned_cols=38 Identities=29% Similarity=0.175 Sum_probs=31.0
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhc---CCCEEEEeccc
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAE 569 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~---~~~fi~v~~~e 569 (594)
.....++|+||||||||++|+++|.++ +.+++.++.++
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 446789999999999999999999765 46777776544
No 385
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.49 E-value=0.00049 Score=77.64 Aligned_cols=37 Identities=35% Similarity=0.452 Sum_probs=31.2
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhc----------CCCEEEEecccc
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDS----------DFPFVKIISAES 570 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~----------~~~fi~v~~~e~ 570 (594)
+.+++|+||||||||++|++++..+ +.+|+.++++.+
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 4579999999999999999998655 468999998653
No 386
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.49 E-value=9.7e-05 Score=84.22 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=31.6
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecc
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISA 568 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~ 568 (594)
..++|||||||||||++|+++|+..+.+|+.++..
T Consensus 52 ~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~ 86 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAV 86 (725)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCcceeehhh
Confidence 34789999999999999999999999999888764
No 387
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.48 E-value=7.6e-05 Score=67.59 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=23.3
Q ss_pred EEeecCCCCchHHHHHHHHhhcCCCE
Q 007661 537 CLLEGPSGSGKTALAATAGIDSDFPF 562 (594)
Q Consensus 537 vLL~GPpG~GKT~lAkalA~~~~~~f 562 (594)
|++.||||||||++|+.++...+..+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~ 27 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVV 27 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE
Confidence 68999999999999999999999333
No 388
>PRK14531 adenylate kinase; Provisional
Probab=97.48 E-value=9.4e-05 Score=70.38 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=28.1
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
.|++.||||||||++++.||...|+++|+.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 589999999999999999999999998875
No 389
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.48 E-value=0.00013 Score=73.02 Aligned_cols=54 Identities=28% Similarity=0.339 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhc---CCCEEEEeccccc
Q 007661 513 KHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESM 571 (594)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~---~~~fi~v~~~e~~ 571 (594)
...+..+....+++. ...+++||||||+|||.||.|||++. |.+.+-+..|+++
T Consensus 89 ~~~l~~~~~~~~~~~-----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~ 145 (254)
T COG1484 89 KKALEDLASLVEFFE-----RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLL 145 (254)
T ss_pred HHHHHHHHHHHHHhc-----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 344445555555553 56789999999999999999999765 7889999999986
No 390
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.48 E-value=0.00071 Score=82.28 Aligned_cols=131 Identities=22% Similarity=0.298 Sum_probs=74.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh--cccc--------hhHHHHHHHHHHHHhhccccCCCCCcE
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS--KFVG--------ETEKNIRDLFADAENDQRTRGDQSDLH 324 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~--~~~g--------~~~~~i~~lf~~a~~~~~~~~~~~~~~ 324 (594)
..+||.||.|+|||.+++.+|+.+ +..+..++-.+.++ .|+| ....+-..+..+++++ +
T Consensus 441 ~pillqG~tssGKtsii~~la~~~-g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~G----------~ 509 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARAT-GKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRNG----------D 509 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHh-ccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHhC----------C
Confidence 469999999999999999999998 45555555443332 2222 3333334445555554 4
Q ss_pred EEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcC---------ccccCcEEEEEeeCCccc------ccHHhhCCCC
Q 007661 325 VIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG---------VESLNNVLLIGMTNRKDM------LDEALLRPGR 389 (594)
Q Consensus 325 Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~---------~~~~~~v~vI~~tn~~~~------ld~al~r~gR 389 (594)
++++||++..+.. .-.++++|+..-.+ +....+..++++-|.+.. +..+++. |
T Consensus 510 ~~vlD~lnla~~d----------vL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~--r 577 (1856)
T KOG1808|consen 510 WIVLDELNLAPHD----------VLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRN--R 577 (1856)
T ss_pred EEEeccccccchH----------HHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhhhhhcccc--c
Confidence 9999999975411 12234444433111 223334566666676643 3444544 5
Q ss_pred ccceeecCCCCHHHHHHHHH
Q 007661 390 LEVQVEISLPDENGRLQILQ 409 (594)
Q Consensus 390 f~~~i~i~~P~~~~r~~IL~ 409 (594)
|. ++++-.-.+++...|+.
T Consensus 578 f~-e~~f~~~~e~e~~~i~~ 596 (1856)
T KOG1808|consen 578 FI-ELHFDDIGEEELEEILE 596 (1856)
T ss_pred ch-hhhhhhcCchhhhhhhc
Confidence 44 34444445555666665
No 391
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.48 E-value=0.00026 Score=66.28 Aligned_cols=36 Identities=31% Similarity=0.502 Sum_probs=31.0
Q ss_pred eEEEeecCCCCchHHHHHHHHhhc---CCCEEEEecccc
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES 570 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~---~~~fi~v~~~e~ 570 (594)
..||++|++||||+++|++|-..+ +.|||+|+.+.+
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~ 61 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAAL 61 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhh
Confidence 679999999999999999999876 479999999865
No 392
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.48 E-value=0.00017 Score=80.04 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=25.7
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcCC
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSDF 560 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~~ 560 (594)
+.+..+||+||||||||++|+++|+..++
T Consensus 35 rl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 35 RLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 44577899999999999999999998776
No 393
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.48 E-value=8.6e-05 Score=67.28 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=26.6
Q ss_pred EEeecCCCCchHHHHHHHHhhcCCCEEE
Q 007661 537 CLLEGPSGSGKTALAATAGIDSDFPFVK 564 (594)
Q Consensus 537 vLL~GPpG~GKT~lAkalA~~~~~~fi~ 564 (594)
|-+-||||||||++|+.||...|++|++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5678999999999999999999999999
No 394
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.46 E-value=0.00078 Score=66.71 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=30.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEec
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNG 288 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~ 288 (594)
|++.+..++++|+||||||+++.+++... ++..+.+++.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 67888889999999999999999997553 3455555544
No 395
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.46 E-value=0.00021 Score=74.61 Aligned_cols=155 Identities=20% Similarity=0.238 Sum_probs=77.4
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhh---hcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhh-----
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTS---KLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL----- 292 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~---~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~----- 292 (594)
|.|.+..+..| .+.+....-.. ....+..-+|||.|.||||||.|.+.+++... .-+++++....
T Consensus 26 i~g~~~iK~ai-----ll~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~p--r~v~~~g~~~s~~gLt 98 (331)
T PF00493_consen 26 IYGHEDIKKAI-----LLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAP--RSVYTSGKGSSAAGLT 98 (331)
T ss_dssp TTT-HHHHHHH-----CCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-S--SEEEEECCGSTCCCCC
T ss_pred CcCcHHHHHHH-----HHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCC--ceEEECCCCcccCCcc
Confidence 88887755444 44444321100 01123445899999999999999998876643 22333333211
Q ss_pred ---------hcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCc-
Q 007661 293 ---------SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV- 362 (594)
Q Consensus 293 ---------~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~- 362 (594)
+.|.-+.. .+-.|.++ |++|||+|.+-. .....|++.|+.-
T Consensus 99 a~~~~d~~~~~~~leaG-----alvlad~G-----------iccIDe~dk~~~-------------~~~~~l~eaMEqq~ 149 (331)
T PF00493_consen 99 ASVSRDPVTGEWVLEAG-----ALVLADGG-----------ICCIDEFDKMKE-------------DDRDALHEAMEQQT 149 (331)
T ss_dssp EEECCCGGTSSECEEE------HHHHCTTS-----------EEEECTTTT--C-------------HHHHHHHHHHHCSC
T ss_pred ceeccccccceeEEeCC-----chhcccCc-----------eeeecccccccc-------------hHHHHHHHHHHcCe
Confidence 11211111 12222222 999999998741 2234566666531
Q ss_pred ---c-------ccCcEEEEEeeCCcc-------------cccHHhhCCCCccceeec-CCCCHHHHHHHHHHHHh
Q 007661 363 ---E-------SLNNVLLIGMTNRKD-------------MLDEALLRPGRLEVQVEI-SLPDENGRLQILQIHTN 413 (594)
Q Consensus 363 ---~-------~~~~v~vI~~tn~~~-------------~ld~al~r~gRf~~~i~i-~~P~~~~r~~IL~~~~~ 413 (594)
. -..+..|+|++|+.. .+++.|++ |||..+.+ +.|+++.-..|-+..++
T Consensus 150 isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~ 222 (331)
T PF00493_consen 150 ISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILD 222 (331)
T ss_dssp EEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHT
T ss_pred eccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEe
Confidence 1 123678999999864 26788888 99987665 55666555555554444
No 396
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.45 E-value=0.00017 Score=71.35 Aligned_cols=61 Identities=23% Similarity=0.254 Sum_probs=49.3
Q ss_pred cCCCcceEEEeecCCCCchHHHHHHHHhhcC--CCEEEEeccccccccccchhhhHHHHHHHhhh
Q 007661 529 SKGSPLVTCLLEGPSGSGKTALAATAGIDSD--FPFVKIISAESMIGLHESTKCAQIVKVSECQF 591 (594)
Q Consensus 529 ~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~--~~fi~v~~~e~~vG~sE~~~~~~ir~~F~~A~ 591 (594)
.+.-..+.+|+.|+||||||++|-.+|...| -||.+|.|+|+|- -|-.|..+|...|+++-
T Consensus 61 egkiaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~S--lEmsKTEAltQAfRksi 123 (454)
T KOG2680|consen 61 EGKIAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYS--LEMSKTEALTQAFRKSI 123 (454)
T ss_pred cCcccceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceeee--ecccHHHHHHHHHHHhh
Confidence 3444567799999999999999999998887 5999999999991 24444456999999873
No 397
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.45 E-value=0.00012 Score=72.13 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=29.0
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
+..|+|.||||||||++|+.||...|+++|++
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 35599999999999999999999999888876
No 398
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.43 E-value=0.00086 Score=75.05 Aligned_cols=56 Identities=23% Similarity=0.260 Sum_probs=37.0
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhh-cCCCCCceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSK-LGIKHVKGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~-~g~~~~~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
|-|.+..++.|+-.+|-..-. .... .-++---+|||.|.||||||.+.+.+++.+.
T Consensus 288 IyG~e~VKkAilLqLfgGv~k---~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aP 344 (682)
T COG1241 288 IYGHEDVKKAILLQLFGGVKK---NLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAP 344 (682)
T ss_pred ccCcHHHHHHHHHHhcCCCcc---cCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCC
Confidence 888888777664443322211 1111 0123335799999999999999999999875
No 399
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.43 E-value=9.9e-05 Score=65.84 Aligned_cols=47 Identities=26% Similarity=0.474 Sum_probs=37.9
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcCCCEEEE----eccccccccccchhhh
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSDFPFVKI----ISAESMIGLHESTKCA 581 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v----~~~e~~vG~sE~~~~~ 581 (594)
..||+.|-||||||++|++||...|+++|-| +=-.+|-|++|.-||-
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~y~c~ 58 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEEYKCH 58 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhcccccccCc
Confidence 3599999999999999999999999999876 2233457777776653
No 400
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.43 E-value=0.0013 Score=70.75 Aligned_cols=209 Identities=14% Similarity=0.188 Sum_probs=101.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhh---------------cccch-----hHHHHHHHHHH
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLS---------------KFVGE-----TEKNIRDLFAD 309 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~---------------~~~g~-----~~~~i~~lf~~ 309 (594)
.+|..++++|++|+||||++..+|..+. +..+..+++..+.. .+.+. ....+++.++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 4678899999999999999999998874 33455555432211 01111 11122333333
Q ss_pred HHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHh--hCC
Q 007661 310 AENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEAL--LRP 387 (594)
Q Consensus 310 a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al--~r~ 387 (594)
+... ++|+||..-.+. ....++.+|....+-.....-++|+-++...+.++.+- .+.
T Consensus 173 ~~~~----------DvVIIDTAGr~~-----------~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~~~ 231 (437)
T PRK00771 173 FKKA----------DVIIVDTAGRHA-----------LEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEA 231 (437)
T ss_pred hhcC----------CEEEEECCCccc-----------chHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHHhc
Confidence 3221 499999876542 12344444444333333333455555555444444321 110
Q ss_pred CCccceeecCCCCHHHHH-HHHHHHHh-cccc----CCC-C--CCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Q 007661 388 GRLEVQVEISLPDENGRL-QILQIHTN-KMKE----NSF-L--APDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQL 458 (594)
Q Consensus 388 gRf~~~i~i~~P~~~~r~-~IL~~~~~-~~~~----~~~-l--~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~ 458 (594)
-.+. -+-+.-.|...|. .+|..... +.+- .+. + ....+.+.++.+.-|+ .|+..|++.|...--....
T Consensus 232 l~i~-gvIlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilgm--gd~~~l~e~~~~~~~~~~~ 308 (437)
T PRK00771 232 VGIG-GIIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGM--GDLESLLEKVEEALDEEEE 308 (437)
T ss_pred CCCC-EEEEecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhCC--CChHHHHHHHHHhhhHHHH
Confidence 1111 2233444444443 23322211 1110 000 1 1233567778777653 4888888877643110000
Q ss_pred CcccCCCCcccchhhcchhHHHHHHHhccc
Q 007661 459 SMDDLTKPVDEESIKVTMDDFLHALYEIVP 488 (594)
Q Consensus 459 ~~~~~~~~~~~~~~~vt~~df~~al~~~~p 488 (594)
..+.+ .......+.+||...++.+..
T Consensus 309 --~~~~~--~~~~~~f~l~d~~~q~~~~~k 334 (437)
T PRK00771 309 --EKDVE--KMMKGKFTLKDMYKQLEAMNK 334 (437)
T ss_pred --HHHHH--HHHcCCcCHHHHHHHHHHHHh
Confidence 00000 012245789999998887743
No 401
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.43 E-value=0.0002 Score=71.10 Aligned_cols=54 Identities=24% Similarity=0.319 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhc---CCCEEEEeccccc
Q 007661 514 HIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESM 571 (594)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~---~~~fi~v~~~e~~ 571 (594)
.++..+..+.+.+.. ...+++|+||||||||.||.++|++. |.+++.+..++++
T Consensus 83 ~al~~a~~~~~~~~~----~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~ 139 (244)
T PRK07952 83 NALSKARQYVEEFDG----NIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM 139 (244)
T ss_pred HHHHHHHHHHHhhcc----CCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH
Confidence 355555555544321 23489999999999999999999876 7788888887775
No 402
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.42 E-value=0.00011 Score=69.54 Aligned_cols=39 Identities=26% Similarity=0.429 Sum_probs=31.4
Q ss_pred cceEEEeecCCCCchHHHHHHHHhh---cCCCEEEEeccccc
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGID---SDFPFVKIISAESM 571 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~---~~~~fi~v~~~e~~ 571 (594)
...+++|+||||||||.||.++|++ .|.+...+..++++
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~ 87 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLL 87 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCcee
Confidence 3568999999999999999999864 58999999999886
No 403
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=0.00046 Score=72.46 Aligned_cols=113 Identities=20% Similarity=0.384 Sum_probs=63.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhhC---C-CCcEEEecchhh-------h---cccc------hhHHHHHHHHHHH
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQIGKMLN---G-MEPKIVNGPEVL-------S---KFVG------ETEKNIRDLFADA 310 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l~---~-~~~~~v~~~~l~-------~---~~~g------~~~~~i~~lf~~a 310 (594)
+.....++|.||+|+||||++..+|..+. + ..+.++....+. . ++.| .....+...+...
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l 213 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL 213 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh
Confidence 35567899999999999999999997641 2 234444433321 1 0111 1111222222222
Q ss_pred HhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccc-cCcEEEEEeeCCcccccHHhh
Q 007661 311 ENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVES-LNNVLLIGMTNRKDMLDEALL 385 (594)
Q Consensus 311 ~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~-~~~v~vI~~tn~~~~ld~al~ 385 (594)
. ..++|+||.+.... .+..+...+..+..... ...++|+.+|+..+.++..+.
T Consensus 214 ~----------~~DlVLIDTaG~~~------------~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 214 R----------NKHMVLIDTIGMSQ------------RDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred c----------CCCEEEEcCCCCCc------------ccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 1 13599999986431 12233344444444332 245788888888887776654
No 404
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.41 E-value=0.0074 Score=62.35 Aligned_cols=135 Identities=14% Similarity=0.145 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCC-CCc---hHHHHHHHHHHhhcCccccC-cEEE--EEeeC
Q 007661 303 IRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRD-GTG---VHDSIVNQLLTKIDGVESLN-NVLL--IGMTN 375 (594)
Q Consensus 303 i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~-~~~---~~~~~v~~Ll~~ld~~~~~~-~v~v--I~~tn 375 (594)
+..++++...... ..|.++-||++++++....-... ... ..-.++..|+..+.+-.... ..+| +++|.
T Consensus 142 ~~~l~~EL~~~~~-----~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~ 216 (309)
T PF10236_consen 142 FQALIRELKAQSK-----RPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATS 216 (309)
T ss_pred HHHHHHHHHhccc-----CCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccc
Confidence 4444455444332 24789999999999865322111 111 12235566666655443323 3333 55553
Q ss_pred C---cc--cccHHhhCCCC------cc-------------ceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHH
Q 007661 376 R---KD--MLDEALLRPGR------LE-------------VQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELA 431 (594)
Q Consensus 376 ~---~~--~ld~al~r~gR------f~-------------~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la 431 (594)
. +. .++.++..... |. ..|+++..+.+|-..+++.+...--......+..-.+++.
T Consensus 217 ~~~~~~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~ 296 (309)
T PF10236_consen 217 VSNAPKSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLF 296 (309)
T ss_pred cccccCCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHH
Confidence 3 22 35555553111 11 2688999999999999998865433111111222233333
Q ss_pred HHcCCCCHHHHH
Q 007661 432 ARTKNYSGAELE 443 (594)
Q Consensus 432 ~~t~g~sg~dl~ 443 (594)
..+ |.+++++.
T Consensus 297 ~~s-~GNp~el~ 307 (309)
T PF10236_consen 297 LSS-NGNPRELE 307 (309)
T ss_pred Hhc-CCCHHHhc
Confidence 333 45777764
No 405
>PRK07261 topology modulation protein; Provisional
Probab=97.41 E-value=0.00012 Score=68.84 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=29.2
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEEec
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKIIS 567 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~ 567 (594)
.|++.||||||||+||+.||...+++++.++.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 38999999999999999999999999988763
No 406
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.00032 Score=75.54 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=24.7
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhcCC
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDSDF 560 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~~~ 560 (594)
.+..+||+||||||||++|+++|...++
T Consensus 39 i~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 39 IGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 3456899999999999999999998876
No 407
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.41 E-value=0.00012 Score=66.58 Aligned_cols=30 Identities=27% Similarity=0.548 Sum_probs=28.6
Q ss_pred EEeecCCCCchHHHHHHHHhhcCCCEEEEe
Q 007661 537 CLLEGPSGSGKTALAATAGIDSDFPFVKII 566 (594)
Q Consensus 537 vLL~GPpG~GKT~lAkalA~~~~~~fi~v~ 566 (594)
|.+.|+||||||++|+.||...|++|+..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999999887
No 408
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.40 E-value=0.00065 Score=67.21 Aligned_cols=122 Identities=16% Similarity=0.208 Sum_probs=64.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh--C------CCCcEEEecchhhh-cccc----------------------h
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML--N------GMEPKIVNGPEVLS-KFVG----------------------E 298 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l--~------~~~~~~v~~~~l~~-~~~g----------------------~ 298 (594)
|+++..-+.|+||||||||+++..++... . ....++++..+-.. ..+. .
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 67777789999999999999999998543 1 13455666543111 0000 0
Q ss_pred hHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEee
Q 007661 299 TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMT 374 (594)
Q Consensus 299 ~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~t 374 (594)
....+..++......-.. ...+.+|+||-+.++...............+.+.+++..+..+....++.||.+.
T Consensus 95 ~~~~l~~~l~~l~~~l~~---~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn 167 (235)
T cd01123 95 NSDHQLQLLEELEAILIE---SSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITN 167 (235)
T ss_pred CHHHHHHHHHHHHHHHhh---cCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEec
Confidence 011122222222221110 1146799999999886321111100112234455566665555445577777664
No 409
>PRK14974 cell division protein FtsY; Provisional
Probab=97.39 E-value=0.0019 Score=67.06 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
.|.-++|.||||+||||++..+|..+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~ 165 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK 165 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 467799999999999999999988773
No 410
>PRK06217 hypothetical protein; Validated
Probab=97.39 E-value=0.00016 Score=68.86 Aligned_cols=31 Identities=32% Similarity=0.431 Sum_probs=29.1
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEEe
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKII 566 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~ 566 (594)
.|++.|+||||||++|++||...|++++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999999875
No 411
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.37 E-value=0.0012 Score=69.18 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=30.0
Q ss_pred EEEEeCCcEEEEEeeCCC--CCCCceeeCHhhhhccCccCCCeEEEE
Q 007661 50 LASVAGDSFVLSLASHPS--VNKGQIALNSVQRRHAKVSTGDHVSLN 94 (594)
Q Consensus 50 ~v~v~g~~~v~~~~~~~~--~~~~~i~~~~~~r~~~~~~~~~~v~v~ 94 (594)
++.+-.++|-|.-.++.. -.++.|+++..|-+-.++..||.|.-.
T Consensus 54 ~le~~~~g~gflr~~~~~y~~~~~d~yvs~~~ir~~~lr~gd~v~g~ 100 (416)
T PRK09376 54 VLEILPDGFGFLRSPDANYLPGPDDIYVSPSQIRRFNLRTGDTVEGK 100 (416)
T ss_pred EEEEcCCCCeEEeCCCcCCCCCCCCeeeCHHHHHhcCCCCCCEEEEE
Confidence 344433455553333222 345679999999999999999999755
No 412
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.37 E-value=0.0003 Score=72.98 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=32.4
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccc
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAE 569 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e 569 (594)
..+..+||+||||+|||++|+++|.+.+.+++.++..+
T Consensus 41 ~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~ 78 (316)
T PHA02544 41 RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD 78 (316)
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc
Confidence 34556777999999999999999999999998887765
No 413
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.37 E-value=0.0003 Score=69.29 Aligned_cols=38 Identities=21% Similarity=0.108 Sum_probs=30.8
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhc---CCCEEEEeccc
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAE 569 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~---~~~fi~v~~~e 569 (594)
.+...++|+||||||||+||+++|.++ +.+++.++..+
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 345679999999999999999999864 66777776654
No 414
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.36 E-value=0.0014 Score=69.34 Aligned_cols=132 Identities=16% Similarity=0.213 Sum_probs=72.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhC------CCCcEEEecchhhh-------c---------ccchhHHHHHHHHHHH
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLN------GMEPKIVNGPEVLS-------K---------FVGETEKNIRDLFADA 310 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~------~~~~~~v~~~~l~~-------~---------~~g~~~~~i~~lf~~a 310 (594)
.|..++|+||+|+||||.+..+|..+. +..+..+++..+.. . ........+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 467899999999999999999997763 23344444332211 1 1112222333333332
Q ss_pred HhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcccc-CcEEEEEeeCCcccccHHhhCCCC
Q 007661 311 ENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESL-NNVLLIGMTNRKDMLDEALLRPGR 389 (594)
Q Consensus 311 ~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~-~~v~vI~~tn~~~~ld~al~r~gR 389 (594)
. ..++|+||.+..... . .. -+..+...++..... ..++|+.+|...+.+...+.+...
T Consensus 253 ~----------~~DlVLIDTaGr~~~---------~-~~-~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~ 311 (388)
T PRK12723 253 K----------DFDLVLVDTIGKSPK---------D-FM-KLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSP 311 (388)
T ss_pred C----------CCCEEEEcCCCCCcc---------C-HH-HHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcC
Confidence 1 134999999987531 1 11 244444444443322 467888888887777766554222
Q ss_pred c-cceeecCCCCHHHHH
Q 007661 390 L-EVQVEISLPDENGRL 405 (594)
Q Consensus 390 f-~~~i~i~~P~~~~r~ 405 (594)
+ ...+-+.-.|+..+.
T Consensus 312 ~~~~~~I~TKlDet~~~ 328 (388)
T PRK12723 312 FSYKTVIFTKLDETTCV 328 (388)
T ss_pred CCCCEEEEEeccCCCcc
Confidence 1 123445555554443
No 415
>PLN02674 adenylate kinase
Probab=97.35 E-value=0.00032 Score=69.48 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=29.7
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
.+...++|.||||||||++|+.||...|+..|+.
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~ 62 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLAT 62 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEch
Confidence 4456799999999999999999999999877765
No 416
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.35 E-value=0.00023 Score=77.99 Aligned_cols=30 Identities=27% Similarity=0.211 Sum_probs=26.2
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcCCC
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFP 561 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~~~ 561 (594)
+.+.++||+||||||||++|+++|...++.
T Consensus 41 ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 41 RLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 445679999999999999999999988763
No 417
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.34 E-value=0.00021 Score=62.77 Aligned_cols=32 Identities=25% Similarity=0.687 Sum_probs=26.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 257 MLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 257 iLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
|++.|||||||||+|+.+++.++ +.+++..++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~---~~~i~~d~~ 33 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLG---FPVISMDDL 33 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT---CEEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHC---CeEEEecce
Confidence 78999999999999999999984 444555553
No 418
>PRK14530 adenylate kinase; Provisional
Probab=97.34 E-value=0.00015 Score=70.81 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=28.0
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
.|++.||||||||++|+.||...|+++|++
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 589999999999999999999999999865
No 419
>PRK09354 recA recombinase A; Provisional
Probab=97.34 E-value=0.0012 Score=68.65 Aligned_cols=116 Identities=20% Similarity=0.325 Sum_probs=63.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEecchhhhc------------c----cchhHHHHHHHHHHHH
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPEVLSK------------F----VGETEKNIRDLFADAE 311 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~~~l~~~------------~----~g~~~~~i~~lf~~a~ 311 (594)
|++..+-++++||||||||+|+-.++... .+...++++..+-.+. + ....+..+ .+.+...
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l-~i~~~li 134 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQAL-EIADTLV 134 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHH-HHHHHHh
Confidence 56667779999999999999999877554 2345556655432220 0 00111111 1222111
Q ss_pred hhccccCCCCCcEEEEEccchhhhccCCCCC---C-CCchHHHHHHHHHHhhcCccccCcEEEEEe
Q 007661 312 NDQRTRGDQSDLHVIIFDEIDAICKSRGSTR---D-GTGVHDSIVNQLLTKIDGVESLNNVLLIGM 373 (594)
Q Consensus 312 ~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~---~-~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~ 373 (594)
+ ...+.+|+||=+-++.+..+-.. + ..+...+.+.+.+..+...-...++.+|.+
T Consensus 135 ~-------s~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~t 193 (349)
T PRK09354 135 R-------SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFI 193 (349)
T ss_pred h-------cCCCCEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 1 12356999999999986321110 0 112233455565555555445567777765
No 420
>PRK13948 shikimate kinase; Provisional
Probab=97.33 E-value=0.00021 Score=67.82 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=32.5
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEe
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKII 566 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~ 566 (594)
.++..|+|.|++|||||++++.||...|.+||-.+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 46788999999999999999999999999999776
No 421
>PRK06893 DNA replication initiation factor; Validated
Probab=97.32 E-value=0.00013 Score=72.07 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=21.3
Q ss_pred EEEeecCCCCchHHHHHHHHhhc
Q 007661 536 TCLLEGPSGSGKTALAATAGIDS 558 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~ 558 (594)
.++||||||||||.|+.++|++.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999874
No 422
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.32 E-value=0.0012 Score=63.28 Aligned_cols=26 Identities=38% Similarity=0.707 Sum_probs=23.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
..+.|+.|||||||||+.|-+|+.++
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s 162 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLS 162 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhh
Confidence 34689999999999999999998874
No 423
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.32 E-value=0.00033 Score=73.29 Aligned_cols=35 Identities=31% Similarity=0.393 Sum_probs=29.1
Q ss_pred EEEeecCCCCchHHHHHHHHhhcC-----CCEEEEecccc
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSD-----FPFVKIISAES 570 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~-----~~fi~v~~~e~ 570 (594)
++|||||||||||++|+++|.+.. .+++.++..+.
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 599999999999999999998763 45777776653
No 424
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.32 E-value=0.00028 Score=79.32 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=44.0
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcCCC----EEEEecccc-----c----cccccchhhhHHHHHHHhhhcC
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSDFP----FVKIISAES-----M----IGLHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~~~----fi~v~~~e~-----~----vG~sE~~~~~~ir~~F~~A~~~ 593 (594)
.+++|+||||||||++|+++|...+.+ ++.+--|++ + -|++++. ++..|..|++.
T Consensus 38 ~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~~~~~~~~~v~~~~g~~~----~~~~~~~~~~~ 105 (608)
T TIGR00764 38 RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPEDPNMPRIVEVPAGEGREI----VEDYKKKAFKQ 105 (608)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCCCCchHHHHHHHHhhchHH----HHHHHHHhhcc
Confidence 389999999999999999999988755 344555533 2 6778876 99999999875
No 425
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.31 E-value=0.0011 Score=62.62 Aligned_cols=23 Identities=43% Similarity=0.794 Sum_probs=21.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhC
Q 007661 257 MLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 257 iLL~GppGtGKT~lar~ia~~l~ 279 (594)
|+|.|+||+|||++|+.+|+.+.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 78999999999999999999995
No 426
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.31 E-value=0.00018 Score=65.92 Aligned_cols=29 Identities=28% Similarity=0.420 Sum_probs=25.8
Q ss_pred EEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 537 CLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 537 vLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
++|.||||+|||++|+.++...+..++..
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~ 30 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDG 30 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeC
Confidence 68999999999999999999988777653
No 427
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.30 E-value=0.00046 Score=75.28 Aligned_cols=63 Identities=17% Similarity=0.372 Sum_probs=44.4
Q ss_pred cccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEec
Q 007661 216 LQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNG 288 (594)
Q Consensus 216 ~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~ 288 (594)
|++ +-|+++.+++|+ +.+.... ..++ ...+-++|.||||+|||+||+.+++.+...+++.+.+
T Consensus 75 F~d--~yGlee~ieriv-~~l~~Aa------~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 75 FEE--FYGMEEAIEQIV-SYFRHAA------QGLE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred hhc--ccCcHHHHHHHH-HHHHHHH------HhcC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 556 999999999995 3332111 1222 2334688999999999999999999987666555544
No 428
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.30 E-value=0.0012 Score=62.56 Aligned_cols=36 Identities=19% Similarity=0.332 Sum_probs=29.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcc
Q 007661 257 MLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKF 295 (594)
Q Consensus 257 iLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~ 295 (594)
|+++||||+||||+|+.+++.++ +..++..+++.+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~---~~~is~~d~lr~~ 37 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG---FTHLSAGDLLRAE 37 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---CeEEECChHHHHH
Confidence 68999999999999999999874 4567777776543
No 429
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.021 Score=59.47 Aligned_cols=137 Identities=11% Similarity=0.123 Sum_probs=73.1
Q ss_pred HHHHHHHHHhhccccCCCCCcEEEEEccchhhhc----cCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEee--CC
Q 007661 303 IRDLFADAENDQRTRGDQSDLHVIIFDEIDAICK----SRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMT--NR 376 (594)
Q Consensus 303 i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~----~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~t--n~ 376 (594)
+..++++.++.. . ...-+.++.||++.++.. ++.....-....-.++..+...+.+-.. .+.++.++. .-
T Consensus 299 vg~llrelk~~s-~--~~~~kVLvaID~~n~l~~~T~~k~~~~~~v~P~dl~li~~~~~~i~ndwt-~g~vi~a~s~~~~ 374 (461)
T KOG3928|consen 299 VGILLRELKRLS-V--QSKVKVLVAIDNFNSLFTVTAYKSEDNKPVTPLDLTLIHLLRDIISNDWT-FGSVIMAISGVTT 374 (461)
T ss_pred HHHHHHHHHHhh-h--hcCccEEEEEcCcchheeeeeeeccccCcCCchhhhHHHHHHHHHhcccc-cceEEEEeccccc
Confidence 444555555443 1 122366889999999987 3333332223333455555555554333 233333333 11
Q ss_pred ccc--------------ccHH---hhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCH
Q 007661 377 KDM--------------LDEA---LLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSG 439 (594)
Q Consensus 377 ~~~--------------ld~a---l~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg 439 (594)
+.. +++. .+.| | ..|+++.++.+|-..++..+++.--.......+....++--.+ +.++
T Consensus 375 ~~a~~h~gv~~y~pr~llg~egfe~lqp--f-~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP 450 (461)
T KOG3928|consen 375 PSAFGHLGVAPYVPRKLLGEEGFEALQP--F-VPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNP 450 (461)
T ss_pred chhccccccccCCchHhcCccchhhccC--c-CccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCH
Confidence 211 1111 1122 2 2588999999999999998875432111122344566665555 6788
Q ss_pred HHHHHHHH
Q 007661 440 AELEGVAK 447 (594)
Q Consensus 440 ~dl~~l~~ 447 (594)
+.++.+|.
T Consensus 451 ~l~~~lca 458 (461)
T KOG3928|consen 451 SLMERLCA 458 (461)
T ss_pred HHHHHHHH
Confidence 77776664
No 430
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.00055 Score=75.34 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=25.6
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcCCC
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFP 561 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~~~ 561 (594)
+.+-.+||+||||||||++|+++|...++.
T Consensus 36 ~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 36 YLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 345568999999999999999999988763
No 431
>PLN02200 adenylate kinase family protein
Probab=97.29 E-value=0.00025 Score=70.17 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=29.8
Q ss_pred CCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 530 KGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 530 ~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
+.+++.-+++.||||||||++|+.||...|+..|+.
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~ 74 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSA 74 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEc
Confidence 345566789999999999999999999998766544
No 432
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.00043 Score=73.26 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=24.9
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcCC
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSDF 560 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~~ 560 (594)
+.+-.+||+||||||||++|+++|.+.++
T Consensus 36 ~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 36 RIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred CCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 34556899999999999999999988764
No 433
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.28 E-value=0.00047 Score=66.36 Aligned_cols=25 Identities=36% Similarity=0.660 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
+-.++.||||||||++++.+...+.
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~ 43 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALE 43 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHH
Confidence 3578899999999999999987774
No 434
>PRK08118 topology modulation protein; Reviewed
Probab=97.26 E-value=0.00064 Score=63.64 Aligned_cols=25 Identities=48% Similarity=0.850 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
+.|+++||||+||||+|+.+++.++
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999999984
No 435
>PRK06547 hypothetical protein; Provisional
Probab=97.25 E-value=0.00037 Score=65.54 Aligned_cols=36 Identities=39% Similarity=0.667 Sum_probs=31.5
Q ss_pred CCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEe
Q 007661 531 GSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKII 566 (594)
Q Consensus 531 ~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~ 566 (594)
..++.-|++.||+|||||++|+.||...+.++++.+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 355677899999999999999999999998888764
No 436
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.25 E-value=0.00022 Score=66.11 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=29.3
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcCCCEEEEe
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSDFPFVKII 566 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~ 566 (594)
..|.|.|++|+|||++.++||...+++|+=.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 45899999999999999999999999998763
No 437
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.24 E-value=0.00035 Score=76.18 Aligned_cols=37 Identities=24% Similarity=0.212 Sum_probs=31.3
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhc-----CCCEEEEecccc
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDS-----DFPFVKIISAES 570 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~-----~~~fi~v~~~e~ 570 (594)
...++||||||||||.|++++|++. +..++.+.+.+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~ 189 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF 189 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 3469999999999999999999886 667888877654
No 438
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.24 E-value=0.0085 Score=59.08 Aligned_cols=140 Identities=16% Similarity=0.197 Sum_probs=75.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhCCCC-cEEEecchhhh---ccc-----c------hhHHHHHHHHHHHHhhcc-
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGME-PKIVNGPEVLS---KFV-----G------ETEKNIRDLFADAENDQR- 315 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~~~~-~~~v~~~~l~~---~~~-----g------~~~~~i~~lf~~a~~~~~- 315 (594)
+.|-.+++.|++|||||++++.+...+.... .+++-.+.... +|+ . +.+..+...-+...+...
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 4556799999999999999999988764322 11221221111 111 0 111111111111111110
Q ss_pred -ccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCcccee
Q 007661 316 -TRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQV 394 (594)
Q Consensus 316 -~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i 394 (594)
.......+.+|++||+..- ...+..+.+++.. ...-++.+|..+...-.+++.+|. -.+..+
T Consensus 91 ~~~~k~~~~~LiIlDD~~~~-----------~~k~~~l~~~~~~----gRH~~is~i~l~Q~~~~lp~~iR~--n~~y~i 153 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGDK-----------KLKSKILRQFFNN----GRHYNISIIFLSQSYFHLPPNIRS--NIDYFI 153 (241)
T ss_pred hcccCCCCCeEEEEeCCCCc-----------hhhhHHHHHHHhc----ccccceEEEEEeeecccCCHHHhh--cceEEE
Confidence 0111234679999997420 1123455566543 222368888888888889999976 566666
Q ss_pred ecCCCCHHHHHHHHH
Q 007661 395 EISLPDENGRLQILQ 409 (594)
Q Consensus 395 ~i~~P~~~~r~~IL~ 409 (594)
-+. -+......|++
T Consensus 154 ~~~-~s~~dl~~i~~ 167 (241)
T PF04665_consen 154 IFN-NSKRDLENIYR 167 (241)
T ss_pred Eec-CcHHHHHHHHH
Confidence 565 35555555554
No 439
>PHA02774 E1; Provisional
Probab=97.24 E-value=0.0013 Score=71.85 Aligned_cols=39 Identities=36% Similarity=0.678 Sum_probs=31.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEec
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNG 288 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~ 288 (594)
+++...+++||||||||||++|.++++.+.+..+.++|.
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 344446899999999999999999999997666555664
No 440
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.23 E-value=0.00021 Score=66.45 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=27.0
Q ss_pred EEeecCCCCchHHHHHHHHhhcCCCEEEEec
Q 007661 537 CLLEGPSGSGKTALAATAGIDSDFPFVKIIS 567 (594)
Q Consensus 537 vLL~GPpG~GKT~lAkalA~~~~~~fi~v~~ 567 (594)
+++.||||||||++|+.||...+..++..+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~ 31 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDD 31 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCcc
Confidence 4789999999999999999999988876544
No 441
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.22 E-value=0.00042 Score=64.86 Aligned_cols=40 Identities=20% Similarity=0.377 Sum_probs=30.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhc
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSK 294 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~ 294 (594)
.++..|+|+|+||||||++|+.+|+.++ . .+++..++...
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~-~--~~~d~d~~~~~ 41 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLG-Y--DFIDTDHLIEA 41 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhC-C--CEEEChHHHHH
Confidence 4567899999999999999999999984 3 33455555443
No 442
>PRK02496 adk adenylate kinase; Provisional
Probab=97.22 E-value=0.0003 Score=66.90 Aligned_cols=30 Identities=23% Similarity=0.437 Sum_probs=28.2
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
.+++.||||||||++|+.||...+++.+++
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999999999986
No 443
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.22 E-value=0.00019 Score=61.85 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=19.8
Q ss_pred EEeecCCCCchHHHHHHHHhhcC
Q 007661 537 CLLEGPSGSGKTALAATAGIDSD 559 (594)
Q Consensus 537 vLL~GPpG~GKT~lAkalA~~~~ 559 (594)
|.||||||||||++|+.||....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999885543
No 444
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.20 E-value=0.0003 Score=65.96 Aligned_cols=31 Identities=26% Similarity=0.399 Sum_probs=29.0
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEEe
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKII 566 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~ 566 (594)
.++|.|+||||||++|+.||...|++|+..+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 5899999999999999999999999999865
No 445
>PHA00729 NTP-binding motif containing protein
Probab=97.20 E-value=0.00035 Score=68.02 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=24.4
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcCCCE
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSDFPF 562 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~~~f 562 (594)
..++++||||||||+||.+||...+..+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l 45 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKL 45 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 4799999999999999999999876433
No 446
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.20 E-value=0.00045 Score=74.34 Aligned_cols=37 Identities=24% Similarity=0.250 Sum_probs=31.4
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhc-----CCCEEEEecccc
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDS-----DFPFVKIISAES 570 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~-----~~~fi~v~~~e~ 570 (594)
...++||||||||||.|++++|++. +..++.+.+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~ 177 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKF 177 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH
Confidence 3468999999999999999999876 678888887654
No 447
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.19 E-value=0.0013 Score=61.24 Aligned_cols=29 Identities=17% Similarity=0.382 Sum_probs=25.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
.+++...+.|.||+|+||||+++.++...
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34566779999999999999999999876
No 448
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.19 E-value=0.0003 Score=66.86 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=26.4
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
-+++.||||||||++|+.||...|+..++.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 478999999999999999999988776654
No 449
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.19 E-value=0.002 Score=65.00 Aligned_cols=25 Identities=32% Similarity=0.660 Sum_probs=23.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
+++++.||+|+||||+.+.++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 6899999999999999999998874
No 450
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.19 E-value=0.0019 Score=62.02 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l 278 (594)
|+-++|.||+|+||||.+-.+|..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 5678999999999999888888766
No 451
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.18 E-value=0.00083 Score=76.91 Aligned_cols=30 Identities=27% Similarity=0.275 Sum_probs=25.6
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcCCC
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFP 561 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~~~ 561 (594)
+.+..+||+||||||||++|+++|+..++.
T Consensus 36 rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 36 RLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 345557999999999999999999988764
No 452
>PRK10536 hypothetical protein; Provisional
Probab=97.18 E-value=0.0016 Score=64.48 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007661 256 GMLLYGPPGTGKTLMARQIGKM 277 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~ 277 (594)
-+++.||+|||||++|.+++.+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999984
No 453
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.18 E-value=0.0011 Score=62.74 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=24.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
+++..-+.|.||.|+||||+++.++..+
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 3556678999999999999999999876
No 454
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.18 E-value=0.0014 Score=69.17 Aligned_cols=23 Identities=43% Similarity=0.650 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhh
Q 007661 256 GMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l 278 (594)
-+++.|.||||||.||-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 455
>PRK14528 adenylate kinase; Provisional
Probab=97.18 E-value=0.00032 Score=66.91 Aligned_cols=30 Identities=23% Similarity=0.384 Sum_probs=28.2
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
.+++.||||+|||++|+.||...|++.+++
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 489999999999999999999999999976
No 456
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.18 E-value=0.00038 Score=65.49 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=30.7
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEEEEec
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKIIS 567 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~ 567 (594)
...|+|.||+|+|||++|+.||...+++|+..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3469999999999999999999999999988764
No 457
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.17 E-value=0.0014 Score=63.23 Aligned_cols=31 Identities=26% Similarity=0.522 Sum_probs=24.5
Q ss_pred hcCCCCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 248 KLGIKHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 248 ~~g~~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
.+.+...+-++|.||+|+||||++|.++...
T Consensus 19 ~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 19 DIDMEKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred eEEEcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 3344455678999999999999999998543
No 458
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.17 E-value=0.0011 Score=70.02 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=23.9
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcC
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSD 559 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~ 559 (594)
+.+..+|||||||+|||++|+++|....
T Consensus 34 ~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 34 RIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456789999999999999999997753
No 459
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.17 E-value=0.00047 Score=69.43 Aligned_cols=71 Identities=18% Similarity=0.264 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccccccccchhhhHHHHHHHhh
Q 007661 517 QRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVSECQ 590 (594)
Q Consensus 517 ~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~vG~sE~~~~~~ir~~F~~A 590 (594)
.....++-++.+.-..|.++.||.|.+||||++++|..|..+++.++.+.....| |..+-. +.+++++.+|
T Consensus 14 ~~ai~hi~ri~RvL~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y-~~~~f~--~dLk~~~~~a 84 (268)
T PF12780_consen 14 DEAIEHIARISRVLSQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGY-SIKDFK--EDLKKALQKA 84 (268)
T ss_dssp HHHHHHHHHHHHHHCSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTT-HHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCc-CHHHHH--HHHHHHHHHH
Confidence 3334444444455557889999999999999999999999999999999988776 334433 2488888776
No 460
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.17 E-value=0.0012 Score=60.94 Aligned_cols=29 Identities=34% Similarity=0.580 Sum_probs=24.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
+.+...+.|.||+|+|||+++++++..+.
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44556789999999999999999998763
No 461
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.17 E-value=0.00068 Score=73.74 Aligned_cols=28 Identities=32% Similarity=0.321 Sum_probs=24.2
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcC
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSD 559 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~ 559 (594)
+.+-++||+||||||||++|+.+|...+
T Consensus 33 ri~ha~Lf~Gp~G~GKTT~ArilAk~Ln 60 (491)
T PRK14964 33 KIPQSILLVGASGVGKTTCARIISLCLN 60 (491)
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHHc
Confidence 4466899999999999999999998543
No 462
>PRK04040 adenylate kinase; Provisional
Probab=97.16 E-value=0.00039 Score=66.38 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=28.1
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhc--CCCEEEE
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDS--DFPFVKI 565 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~--~~~fi~v 565 (594)
+.-++++|+||||||++++.++... +++++..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~ 35 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNF 35 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEec
Confidence 4568999999999999999999998 7777655
No 463
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.15 E-value=0.0088 Score=60.34 Aligned_cols=70 Identities=23% Similarity=0.194 Sum_probs=42.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhCCC--CcEEEec-chhhhc-----ccc-hhHHHHHHHHHHHHhhccccCCCCCcEEE
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLNGM--EPKIVNG-PEVLSK-----FVG-ETEKNIRDLFADAENDQRTRGDQSDLHVI 326 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~~~--~~~~v~~-~~l~~~-----~~g-~~~~~i~~lf~~a~~~~~~~~~~~~~~Il 326 (594)
.+++.||+|+||||+++++...+... .++.+.- .++.-. .+. +......+....+.+. .|++|
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~--------~PD~i 153 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQ--------DPDII 153 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhcc--------CCCEE
Confidence 58999999999999999998877432 2333321 121110 011 1112344555555554 36799
Q ss_pred EEccchh
Q 007661 327 IFDEIDA 333 (594)
Q Consensus 327 ~iDEid~ 333 (594)
+++|+..
T Consensus 154 ~vgEiR~ 160 (264)
T cd01129 154 MVGEIRD 160 (264)
T ss_pred EeccCCC
Confidence 9999964
No 464
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=97.15 E-value=0.00026 Score=67.70 Aligned_cols=23 Identities=43% Similarity=0.476 Sum_probs=19.0
Q ss_pred eEEEeecCCCCchHHHHHHHHhh
Q 007661 535 VTCLLEGPSGSGKTALAATAGID 557 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~ 557 (594)
.++||+||||||||++|++++..
T Consensus 23 h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 23 HHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp --EEEES-CCCTHHHHHHHHHHC
T ss_pred CCeEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999965
No 465
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.15 E-value=0.0016 Score=70.71 Aligned_cols=79 Identities=28% Similarity=0.435 Sum_probs=51.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhhcc------cch--------hHHHHHHHHHHHHhh
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKF------VGE--------TEKNIRDLFADAEND 313 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~~~------~g~--------~~~~i~~lf~~a~~~ 313 (594)
|+.+..-++|+|+||+|||+++..++..+. +..+.++++.+-.... +|- .+..+..+.+.+.+.
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 677778899999999999999999987652 2356677665433210 010 011234444444443
Q ss_pred ccccCCCCCcEEEEEccchhhhc
Q 007661 314 QRTRGDQSDLHVIIFDEIDAICK 336 (594)
Q Consensus 314 ~~~~~~~~~~~Il~iDEid~l~~ 336 (594)
. |.+++||.+..+..
T Consensus 170 ~--------~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 N--------PQACVIDSIQTLYS 184 (454)
T ss_pred C--------CcEEEEecchhhcc
Confidence 3 55999999999864
No 466
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.14 E-value=0.00095 Score=74.07 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=25.2
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcCC
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSDF 560 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~~ 560 (594)
+.+..+||+||+|||||++|+.+|+..++
T Consensus 36 RLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 36 RLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34556899999999999999999988876
No 467
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.14 E-value=0.0029 Score=60.39 Aligned_cols=36 Identities=31% Similarity=0.541 Sum_probs=29.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcc
Q 007661 257 MLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKF 295 (594)
Q Consensus 257 iLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~ 295 (594)
|+|+||||+||||+|+.+++.++ +..++..+++...
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~---~~~i~~~~l~~~~ 37 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG---LPHISTGDLLREE 37 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---CeEEECcHHHHHH
Confidence 79999999999999999999873 4567777766543
No 468
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.14 E-value=0.0011 Score=72.96 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=24.0
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhcCC
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDSDF 560 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~~~ 560 (594)
.+..+|||||||||||++|+++|....+
T Consensus 35 l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 35 LGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4455799999999999999999987754
No 469
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.14 E-value=0.0013 Score=76.00 Aligned_cols=167 Identities=22% Similarity=0.257 Sum_probs=98.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccch-------hHHHHHHHHHHHHhhccccCCCCCcE-EEEE
Q 007661 257 MLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGE-------TEKNIRDLFADAENDQRTRGDQSDLH-VIIF 328 (594)
Q Consensus 257 iLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~-------~~~~i~~lf~~a~~~~~~~~~~~~~~-Il~i 328 (594)
+|++||||.|||+.+..+|.++ +..++..|.++..+++... ....+..-| .....+... ...+ ||++
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~-g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~--~~~~~~~~~--~~~~~vil~ 434 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKEL-GFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSK--KKKGNRQSL--NSDHFLILM 434 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhc-ccceeecCccccccccHHHhhhhccccccchhhhh--ccccccccc--ccceeEEEE
Confidence 6999999999999999999998 5677778877666544221 112233333 111111111 1233 9999
Q ss_pred ccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccH-HhhCCCCccceeecCCCCHHHHHHH
Q 007661 329 DEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDE-ALLRPGRLEVQVEISLPDENGRLQI 407 (594)
Q Consensus 329 DEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~-al~r~gRf~~~i~i~~P~~~~r~~I 407 (594)
||+|.+.. . .+..+.++..... ....-+|.++|..+.... ++. |....+.|.-|+.+.+..-
T Consensus 435 devD~~~~-~---------dRg~v~~l~~l~~----ks~~Piv~~cndr~~p~sr~~~---~~~~~l~f~kP~~~~i~~r 497 (871)
T KOG1968|consen 435 DEVDGMFG-E---------DRGGVSKLSSLCK----KSSRPLVCTCNDRNLPKSRALS---RACSDLRFSKPSSELIRSR 497 (871)
T ss_pred eccccccc-h---------hhhhHHHHHHHHH----hccCCeEEEecCCCCccccchh---hhcceeeecCCcHHHHHhh
Confidence 99999873 1 1223333333322 134567777777654333 233 4445789999998877766
Q ss_pred HHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 007661 408 LQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSF 452 (594)
Q Consensus 408 L~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~ 452 (594)
+...+..... ...+-.++++...+ ++||.+....-...
T Consensus 498 i~si~~se~~---ki~~~~l~~~s~~~----~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 498 IMSICKSEGI---KISDDVLEEISKLS----GGDIRQIIMQLQFW 535 (871)
T ss_pred hhhhhcccce---ecCcHHHHHHHHhc----ccCHHHHHHHHhhh
Confidence 6655543221 23344677777765 66777655544433
No 470
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.14 E-value=0.00083 Score=74.14 Aligned_cols=29 Identities=24% Similarity=0.247 Sum_probs=24.7
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcCC
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSDF 560 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~~ 560 (594)
+.+..+||+||||||||++|+++|...++
T Consensus 36 rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 36 KVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34566899999999999999999987654
No 471
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.14 E-value=0.00081 Score=61.77 Aligned_cols=58 Identities=22% Similarity=0.249 Sum_probs=44.8
Q ss_pred ceEEEeecCCCCchHHHHHHHHh---hcCCCEEEEeccccc------cccccchhhhHHHHHHHhhh
Q 007661 534 LVTCLLEGPSGSGKTALAATAGI---DSDFPFVKIISAESM------IGLHESTKCAQIVKVSECQF 591 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~---~~~~~fi~v~~~e~~------vG~sE~~~~~~ir~~F~~A~ 591 (594)
+.-|.|.|.||+|||+||++|.. +.|.+.+.++|-++- .|.|...+...+|++...|+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ 68 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAK 68 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 35689999999999999999994 558999999998873 67777666667888877765
No 472
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.14 E-value=0.00028 Score=75.84 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=30.7
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCC--C--EEEEe--cccccccc
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDF--P--FVKII--SAESMIGL 574 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~--~--fi~v~--~~e~~vG~ 574 (594)
..++||+||||||||++|+++|..++. + ++.+. .|+.++|.
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence 456999999999999999999987643 3 33343 46666674
No 473
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.14 E-value=0.00041 Score=64.33 Aligned_cols=50 Identities=26% Similarity=0.531 Sum_probs=37.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHH
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADA 310 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a 310 (594)
++|.|.|++|+||||+.|++|+.++ . .+++...++.+..| ..+.++|+.-
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~-~--~F~D~D~~Ie~~~g---~sI~eIF~~~ 52 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALN-L--PFIDTDQEIEKRTG---MSIAEIFEEE 52 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcC-C--CcccchHHHHHHHC---cCHHHHHHHH
Confidence 5799999999999999999999995 3 34666666666555 3455666554
No 474
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.14 E-value=0.0028 Score=62.37 Aligned_cols=39 Identities=38% Similarity=0.422 Sum_probs=29.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh--C-CCCcEEEec
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML--N-GMEPKIVNG 288 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l--~-~~~~~~v~~ 288 (594)
|++++..+|+.||||||||+++.+++... + +..+++++.
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ 56 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF 56 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence 77888889999999999999999876432 3 556666543
No 475
>PRK09183 transposase/IS protein; Provisional
Probab=97.13 E-value=0.00038 Score=70.00 Aligned_cols=38 Identities=32% Similarity=0.411 Sum_probs=31.2
Q ss_pred ceEEEeecCCCCchHHHHHHHHhh---cCCCEEEEeccccc
Q 007661 534 LVTCLLEGPSGSGKTALAATAGID---SDFPFVKIISAESM 571 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~---~~~~fi~v~~~e~~ 571 (594)
..+++|+||||||||+||.++|.+ .|.+...+..++++
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~ 142 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL 142 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence 457999999999999999999754 57777777777764
No 476
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.13 E-value=0.00034 Score=65.99 Aligned_cols=31 Identities=23% Similarity=0.315 Sum_probs=27.6
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEEe
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKII 566 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~ 566 (594)
-++|.||||+|||++|+.|+.+.+.+|+.+.
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~ 34 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLAEPWLHFG 34 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCccccC
Confidence 4899999999999999999999988887553
No 477
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.13 E-value=0.00094 Score=66.14 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=60.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhhC-CCCcEEEecchhhh-------------------------cccchhHHHHH
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQIGKMLN-GMEPKIVNGPEVLS-------------------------KFVGETEKNIR 304 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l~-~~~~~~v~~~~l~~-------------------------~~~g~~~~~i~ 304 (594)
++....+-|.|.+||||||++|.+..... ..--+..++.++.. +|..+....-+
T Consensus 36 i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 36 IKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred EcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 45667789999999999999999998763 11223344443322 22222111112
Q ss_pred HHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCc
Q 007661 305 DLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRK 377 (594)
Q Consensus 305 ~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~ 377 (594)
+-+.-|+... ..|.+|+.||.-+.+. -.+..|.++.|..+....++..+..|+..
T Consensus 116 QRi~IARALa------l~P~liV~DEpvSaLD------------vSiqaqIlnLL~dlq~~~~lt~lFIsHDL 170 (268)
T COG4608 116 QRIGIARALA------LNPKLIVADEPVSALD------------VSVQAQILNLLKDLQEELGLTYLFISHDL 170 (268)
T ss_pred hhHHHHHHHh------hCCcEEEecCchhhcc------------hhHHHHHHHHHHHHHHHhCCeEEEEEEEH
Confidence 2222222221 2367999999987651 12334444444444455566666666653
No 478
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.12 E-value=0.0029 Score=62.84 Aligned_cols=39 Identities=33% Similarity=0.335 Sum_probs=30.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEec
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNG 288 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~ 288 (594)
|+++...+|++||||||||+++..++.+. ++...++++.
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 78888899999999999999998876542 3455555543
No 479
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.11 E-value=0.00099 Score=64.06 Aligned_cols=28 Identities=32% Similarity=0.541 Sum_probs=23.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHh
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKM 277 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~ 277 (594)
|.+...-++|.|+.|+|||+.++.++.+
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~ 75 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPE 75 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHH
Confidence 5566667899999999999999999765
No 480
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.10 E-value=0.00044 Score=62.58 Aligned_cols=34 Identities=32% Similarity=0.741 Sum_probs=27.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh
Q 007661 257 MLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (594)
Q Consensus 257 iLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~ 293 (594)
|+++|||||||||+|+.+++.+. ...++..++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~---~~~i~~D~~~~ 35 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG---AVVISQDEIRR 35 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST---EEEEEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC---CEEEeHHHHHH
Confidence 68999999999999999998874 45566655443
No 481
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.10 E-value=0.00049 Score=68.26 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=22.3
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcC
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSD 559 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~ 559 (594)
..++||||||||||.|+.++|++..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999997654
No 482
>PRK06526 transposase; Provisional
Probab=97.10 E-value=0.00029 Score=70.49 Aligned_cols=37 Identities=30% Similarity=0.403 Sum_probs=28.4
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhc---CCCEEEEecccc
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES 570 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~---~~~fi~v~~~e~ 570 (594)
..+++|+||||||||.||.+||.++ |...+-+..+++
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l 137 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQW 137 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHH
Confidence 4579999999999999999998764 555555545443
No 483
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.09 E-value=0.0018 Score=59.02 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=24.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
+++...+.|.||+|+||||++++++...
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4556678999999999999999999876
No 484
>PTZ00035 Rad51 protein; Provisional
Probab=97.09 E-value=0.0025 Score=66.53 Aligned_cols=29 Identities=28% Similarity=0.288 Sum_probs=24.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
|+....-+.++||||||||+++..++...
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 67777779999999999999999987543
No 485
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.09 E-value=0.0016 Score=63.27 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=23.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
+.+...+=|.|++||||||++|+++...
T Consensus 30 i~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 30 IERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 4556678899999999999999999665
No 486
>PRK13946 shikimate kinase; Provisional
Probab=97.09 E-value=0.00046 Score=65.68 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=30.5
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcCCCEEEEec
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSDFPFVKIIS 567 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~ 567 (594)
..|+|.|+||||||++++.||...|++|+..+-
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 469999999999999999999999999998774
No 487
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.08 E-value=0.00031 Score=62.45 Aligned_cols=38 Identities=24% Similarity=0.283 Sum_probs=30.1
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhc--------CCCEEEEeccccc
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDS--------DFPFVKIISAESM 571 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~--------~~~fi~v~~~e~~ 571 (594)
...++++||||||||++++.++... +.+++.+..|...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR 49 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC
Confidence 3558999999999999999999887 7888888877653
No 488
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.08 E-value=0.00041 Score=67.78 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=28.6
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
.|+++||||+|||++|+.||...|+..+++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 389999999999999999999999999997
No 489
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.08 E-value=0.0025 Score=70.21 Aligned_cols=34 Identities=18% Similarity=0.103 Sum_probs=27.4
Q ss_pred hcCCCcceEEEeecCCCCchHHHHHHHHhhcCCC
Q 007661 528 VSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFP 561 (594)
Q Consensus 528 ~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~ 561 (594)
.+...+.-.|-+.||.|+|||||.|.|+.+.+-.
T Consensus 342 s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~ 375 (530)
T COG0488 342 SFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL 375 (530)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC
Confidence 3455677779999999999999999997666533
No 490
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.08 E-value=0.00086 Score=74.28 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=24.2
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcC
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSD 559 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~ 559 (594)
+.+.++||+||||||||++|+++|....
T Consensus 36 rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 36 KLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4456799999999999999999998764
No 491
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.07 E-value=0.0022 Score=61.27 Aligned_cols=26 Identities=23% Similarity=0.557 Sum_probs=21.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHh
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKM 277 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~ 277 (594)
....-+.++||+||||||+.|++...
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 44455899999999999999999743
No 492
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.07 E-value=0.00054 Score=73.42 Aligned_cols=29 Identities=21% Similarity=0.167 Sum_probs=25.2
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcCC
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSDF 560 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~~ 560 (594)
+.+-.+||+||||||||++|+++|.+..+
T Consensus 36 ~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 36 RVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 44567999999999999999999987765
No 493
>PRK13695 putative NTPase; Provisional
Probab=97.07 E-value=0.008 Score=56.54 Aligned_cols=23 Identities=39% Similarity=0.754 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhh
Q 007661 256 GMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l 278 (594)
.++|.|++|+||||+++.+++.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988776
No 494
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.07 E-value=0.0016 Score=61.66 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=24.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
+.+..-+.|.||+|+||||+++.++...
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4566679999999999999999999876
No 495
>PRK04296 thymidine kinase; Provisional
Probab=97.06 E-value=0.0028 Score=60.65 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=24.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEe
Q 007661 256 GMLLYGPPGTGKTLMARQIGKML--NGMEPKIVN 287 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~ 287 (594)
-++++||||+||||++..++..+ .+..+.+++
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 36899999999999999888776 233444443
No 496
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.06 E-value=0.00093 Score=64.42 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~ 279 (594)
-+++.||+|+||||++++++..+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 378999999999999999998875
No 497
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.05 E-value=0.00038 Score=63.92 Aligned_cols=31 Identities=26% Similarity=0.366 Sum_probs=25.1
Q ss_pred eecCCCCchHHHHHHHHhhcCCCEEEEeccccc
Q 007661 539 LEGPSGSGKTALAATAGIDSDFPFVKIISAESM 571 (594)
Q Consensus 539 L~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~ 571 (594)
+.||||+|||++|+.||.+.|+. .|...+++
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~--~is~~~ll 31 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV--HISVGDLL 31 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE--EEEHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcc--eechHHHH
Confidence 57999999999999999998655 55555554
No 498
>PHA02624 large T antigen; Provisional
Probab=97.05 E-value=0.00078 Score=73.84 Aligned_cols=37 Identities=27% Similarity=0.179 Sum_probs=33.4
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES 570 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~ 570 (594)
..-+|||||||||||++|++|+...+-..++|++|..
T Consensus 431 k~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ 467 (647)
T PHA02624 431 RRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPD 467 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcc
Confidence 4578999999999999999999999888899998883
No 499
>PLN02674 adenylate kinase
Probab=97.05 E-value=0.0019 Score=63.96 Aligned_cols=41 Identities=27% Similarity=0.338 Sum_probs=32.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcc
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKF 295 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~ 295 (594)
+++..|+|.||||+||+|+++.+|+.++ +..++..+++...
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~---~~his~GdllR~~ 69 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAA 69 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcC---CcEEchhHHHHHH
Confidence 3446799999999999999999999874 5567777776543
No 500
>PRK14526 adenylate kinase; Provisional
Probab=97.05 E-value=0.00052 Score=66.76 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=27.7
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
.++|.||||||||++|+.||...++.+++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~ 31 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIST 31 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeec
Confidence 378999999999999999999999999874
Done!